BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047192
(600 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94EG6|Y5224_ARATH Uncharacterized protein At5g02240 OS=Arabidopsis thaliana
GN=At5g02240 PE=1 SV=1
Length = 253
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 35/189 (18%)
Query: 382 SLRPIFQ---ARTVLDA------PPFDPSNIVSLQLMFSKFEYDGKLNPTFVEGAFQLPV 432
S+ P FQ A +L + P FDP+ + +F +Y +++ ++ Q+
Sbjct: 62 SINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVD--WIGQKNQIDA 119
Query: 433 SSIQSYIKDPVTPRFVHVSSAGVTRPERPGLDLSKQPPAVRLNK-ELGFILTFKLKGEDL 491
+ + V V S G T P+ P LNK G IL +K K E
Sbjct: 120 AKVAG------VKHIVVVGSMGGTNPDHP------------LNKLGNGNILVWKRKAEQY 161
Query: 492 IRESGIPYTIVRPCALTEEPAGA-DLIFDQGDNI----TGKISREEVARICVAALESPFA 546
+ +SG PYTI+R L ++ G +L+ + D + T + R +VA +C+ AL A
Sbjct: 162 LADSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEA 221
Query: 547 LDKTFEVKS 555
+K F++ S
Sbjct: 222 KNKAFDLGS 230
>sp|Q8H124|Y2446_ARATH Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis
thaliana GN=At2g34460 PE=1 SV=1
Length = 280
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 470 PAVRLNKELGFILTFKLKGEDLIRESGIPYTIVRPCALTEEPAGADLIFDQGDNI-TGKI 528
PA G L KL+ E I++SGI YTIVRP L +P +++ + D + G I
Sbjct: 175 PAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGLKNDPPTGNVVMEPEDTLYEGSI 234
Query: 529 SREEVARICVAAL---ESPF 545
SR+ VA + V AL ES F
Sbjct: 235 SRDLVAEVAVEALLQEESSF 254
Score = 41.2 bits (95), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 129 VLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKML--GPDVDLIVGDITK 180
V VAGATG G+R+V+ L ++G V+ VR+ EKA+ P + ++ D+T+
Sbjct: 49 VFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSFKDDPSLQIVRADVTE 102
>sp|Q9LQI7|CIA30_ARATH Probable complex I intermediate-associated protein 30
OS=Arabidopsis thaliana GN=At1g17350 PE=1 SV=2
Length = 227
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 75/169 (44%), Gaps = 21/169 (12%)
Query: 257 KLLFGFE-ENSLKELPWGALDDVVMGGVSESTFQI-DRTGGENGAPTGLFKGVVS----- 309
K +F F + LK+ W D GG+S ++ +I D+ G+ TG+F G +S
Sbjct: 32 KHIFKFHSKEDLKK--WHLYSDSEYGGLSSASLEIPDK--GDGSDCTGVFSGNLSVDLSE 87
Query: 310 ----TANNGGFTSIRTRNFAEPEDLSAYDGLKLRLKGDGRRYKFVVRTSSDWDTVG---- 361
+ GF +R++ F DL YD + LR++GDGR Y + T + ++ G
Sbjct: 88 GSKWNISRSGFCGMRSKKFDGFIDLDGYDAIALRIRGDGRCYISTIYTENWVNSPGQSED 147
Query: 362 --YTASFDTVGGQWQSIRLPFSSLRPIFQARTVLDAPPFDPSNIVSLQL 408
+ A W + ++P + P ++ + +P ++ + L
Sbjct: 148 NSWQAFVFAPKDSWYTAKIPLARYLPTWRGNVIDVEMEMNPGRVLGMSL 196
>sp|O80934|Y2766_ARATH Uncharacterized protein At2g37660, chloroplastic OS=Arabidopsis
thaliana GN=At2g37660 PE=1 SV=2
Length = 325
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 481 ILTFKLKGEDLIRESGIPYTIVRPCALTEEPAGA-DLIFDQGDNI----TGKISREEVAR 535
IL +K K E + +SGIPYTI+R L ++ G +L+ + D + T I+R +VA
Sbjct: 223 ILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAE 282
Query: 536 ICVAALESPFALDKTFEVKS 555
+CV AL+ A K ++ S
Sbjct: 283 VCVQALQLEEAKFKALDLAS 302
>sp|P48279|YCF39_CYAPA Uncharacterized protein ycf39 OS=Cyanophora paradoxa GN=ycf39 PE=3
SV=1
Length = 321
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 129 VLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGDITKENTLTPEY 188
+LV GATG +GR++V ++G VR LVRN KA + LI GD+++ +L P
Sbjct: 3 ILVIGATGTLGRQIVRSALDEGYQVRCLVRNLRKAAFLKEWGAKLIWGDLSQPESLLPA- 61
Query: 189 FKGVRKVIN 197
G+R +I+
Sbjct: 62 LTGIRVIID 70
>sp|Q8KU07|AZOB_XENAZ NAD(P)H azoreductase OS=Xenophilus azovorans GN=azoB PE=1 SV=2
Length = 286
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 128 IVLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGDITKENTLTPE 187
++LV G TG +G VV +L+ LP + LVR+ KAR++ V GD+ + TL P
Sbjct: 1 MILVVGGTGTIGSEVVRLLQEAKLPFKALVRDAAKARELNARGVQTAAGDLREPRTL-PA 59
Query: 188 YFKGVRKV 195
GV KV
Sbjct: 60 ALGGVDKV 67
>sp|P49534|YCF39_ODOSI Uncharacterized protein ycf39 OS=Odontella sinensis GN=ycf39 PE=3
SV=1
Length = 319
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 129 VLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGDITKENTLTPEY 188
+L+ G TG +GR+VV KG VR LVRN KA + +LI GD+++ T+ P
Sbjct: 3 LLIIGGTGTLGRQVVLQALTKGYQVRCLVRNFRKANFLKEWGAELIYGDLSRPETIPP-C 61
Query: 189 FKGVRKVINA 198
+G+ VI+
Sbjct: 62 LQGITAVIDT 71
>sp|O19883|YCF39_CYACA Uncharacterized protein ycf39 OS=Cyanidium caldarium GN=ycf39 PE=3
SV=1
Length = 312
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 129 VLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGDITKENTLTPEY 188
+LV GAT +GR++V +G V+ LVRN +KA + L+ GD+ TL P+
Sbjct: 3 LLVIGATSTLGRQIVKKALIQGYEVKCLVRNSKKAAFLKAWGAILVYGDLMVPETL-PQC 61
Query: 189 FKGVRKVINAVSVIVGPKEGD 209
F G +I+ +V V D
Sbjct: 62 FVGASVIIDVSTVKVKDLNND 82
>sp|Q9VAI1|CIA30_DROME Probable complex I intermediate-associated protein 30,
mitochondrial OS=Drosophila melanogaster GN=CG7598 PE=2
SV=1
Length = 296
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 24/130 (18%)
Query: 272 WGALDDVVMG-GVSESTFQIDRTGGENGAPTGLFKGVVSTANNG-------GFTSIRTRN 323
W D G G S +T ++ G GLF G V++ + G+ +IRT+
Sbjct: 103 WTVTTDADHGEGKSTATLELSAAGA------GLFHGQVNSDHTKDGIIKRTGYANIRTKR 156
Query: 324 FAEP------EDLSAYDGLKLRLKGDGRRYKFVVRTSSD----WDTVGYTASFDTVGGQW 373
+ D + Y+ L ++++GDGR Y + T W+ + + + G W
Sbjct: 157 VRKSFKRETTYDWTQYNMLVMKVRGDGRSYLINLHTEGYFDLMWNDIYHYVLYTRGGPHW 216
Query: 374 QSIRLPFSSL 383
Q ++PFS
Sbjct: 217 QIAKIPFSKF 226
>sp|O78472|YCF39_GUITH Uncharacterized protein ycf39 OS=Guillardia theta GN=ycf39 PE=3
SV=1
Length = 314
Score = 40.8 bits (94), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 129 VLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGDITKENTLTPEY 188
+LV GATG +GR++V ++G V LVRN KA + +L+ GD++ TL P
Sbjct: 3 LLVIGATGTLGRQIVRRALDEGYEVSCLVRNLRKAYFLKEWGAELLYGDLSLPETL-PTN 61
Query: 189 FKGVRKVINA 198
+ +I+A
Sbjct: 62 LTKITAIIDA 71
>sp|O07609|YHFK_BACSU Uncharacterized sugar epimerase YhfK OS=Bacillus subtilis (strain
168) GN=yhfK PE=2 SV=1
Length = 214
Score = 40.4 bits (93), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 485 KLKGEDLIRESGIPYTIVRPCALTEEPAGADLIFDQGDNITGKISREEVARICVAALESP 544
K + ++ SG+ YTI+RP L EP G + D G ISR++VA+ +A+L+
Sbjct: 133 KHYADKILEASGLTYTIIRPGGLRNEP-GTGTVSAAKDLERGFISRDDVAKTVIASLDEK 191
Query: 545 FALDKTFEV-KSTIPFSESF 563
++ F++ + P +E+
Sbjct: 192 NTENRAFDLTEGDTPIAEAL 211
>sp|P51238|YCF39_PORPU Uncharacterized protein ycf39 OS=Porphyra purpurea GN=ycf39 PE=3
SV=1
Length = 319
Score = 40.0 bits (92), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 129 VLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGDITKENTLTPEY 188
+LV GATG +GR++V ++G V+ +VRN K+ + +L+ GD+ ++ +
Sbjct: 3 LLVIGATGTLGRQIVRRALDEGYNVKCMVRNLRKSAFLKEWGAELVYGDLKLPESIL-QS 61
Query: 189 FKGVRKVINA 198
F GV VI+A
Sbjct: 62 FCGVTAVIDA 71
>sp|P75821|YBJS_ECOLI Uncharacterized protein YbjS OS=Escherichia coli (strain K12)
GN=ybjS PE=4 SV=2
Length = 337
Score = 40.0 bits (92), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%)
Query: 129 VLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGDITK 180
VLV GAT G+GR V+ L KG+ VR RNE + + + + D+T+
Sbjct: 3 VLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTE 54
>sp|P77775|YFCH_ECOLI Epimerase family protein YfcH OS=Escherichia coli (strain K12)
GN=yfcH PE=3 SV=1
Length = 297
Score = 39.7 bits (91), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 129 VLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGDITKENTLTPEY 188
+++ G TG +GR ++ L G + V+ RN +KA +LGP V L G + N
Sbjct: 3 IVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLGPRVTLWQGLADQSN------ 56
Query: 189 FKGVRKVINAVSVIVGPKEGDTPDRAKYSQ 218
GV VIN + K + + Q
Sbjct: 57 LNGVDAVINLAGEPIADKRWTHEQKERLCQ 86
>sp|Q1XDP9|YCF39_PORYE Uncharacterized protein ycf39 OS=Porphyra yezoensis GN=ycf39 PE=3
SV=1
Length = 319
Score = 39.7 bits (91), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 129 VLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGDITKENTLTPEY 188
+LV GATG +GR++V ++G V+ +VRN K+ + +LI GD+ ++ +
Sbjct: 3 LLVIGATGTLGRQIVRRALDEGYNVKCMVRNLRKSAFLKEWGAELIYGDLKLPESIL-QS 61
Query: 189 FKGVRKVINA 198
F GV +I+A
Sbjct: 62 FCGVTAIIDA 71
>sp|Q8SKU2|TIC62_PEA Protein TIC 62, chloroplastic OS=Pisum sativum GN=TIC62 PE=1 SV=2
Length = 534
Score = 39.7 bits (91), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 52/103 (50%), Gaps = 17/103 (16%)
Query: 470 PAVRLNKELGFILTFKLKGEDLIRESGIPYTIVRPCALTEEPAGADLIFDQGDNIT---- 525
PA LN G +L +K K E+ + SGIPYTIVRP + E P A + + N+T
Sbjct: 227 PAAILNLFWG-VLIWKRKAEEALLASGIPYTIVRPGGM-ERPTDA---YKETHNVTLSTE 281
Query: 526 -----GKISREEVARICVAALESP-FALDKTFEV--KSTIPFS 560
G++S +VA + ++P + K EV ++T P +
Sbjct: 282 DTLFGGQVSNLQVAELMAIMAKNPDLSYCKIVEVIAETTAPLT 324
Score = 36.6 bits (83), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 22/37 (59%)
Query: 127 GIVLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKA 163
+V VAGATG VG R V L G VR VRN +KA
Sbjct: 89 NLVFVAGATGKVGSRTVRELIKLGFKVRAGVRNAQKA 125
>sp|Q0MQ83|CIA30_GORGO Complex I intermediate-associated protein 30, mitochondrial
OS=Gorilla gorilla gorilla GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 38.9 bits (89), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 20/128 (15%)
Query: 272 WGALDDVVMGGVSESTFQIDRTGGENGAPTGLFKGVVSTA------NNGGFTSIRTR--- 322
W D +GG SE ++ G+N L+ + S A G+ ++++R
Sbjct: 136 WTVTSDKTIGGRSEVFLKM----GKNNQSALLYGTLSSEAPQDGESTRSGYCAMKSRIPR 191
Query: 323 ---NFAEPEDLSAYDGLKLRLKGDGRRYKFVVRTSSDW---DTVGYTASFDTVGG-QWQS 375
D S ++ L LR++GDGR + ++ +D+ Y+ T GG WQ
Sbjct: 192 GAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQE 251
Query: 376 IRLPFSSL 383
+++PFS
Sbjct: 252 VKIPFSKF 259
>sp|Q9UT59|YKJ7_SCHPO Putative uncharacterized oxidoreductase C513.07
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC513.07 PE=3 SV=1
Length = 336
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 20/111 (18%)
Query: 128 IVLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKM--LGPDVD-----LIVGDITK 180
+VLV G TG +G V + L G VR VR+ EKA ++ L P + +IV D++
Sbjct: 5 LVLVTGVTGFIGAHVAEQLLQAGYRVRGTVRSMEKADELIRLNPGLKDKIEFVIVKDVSA 64
Query: 181 ENTLTPEYFKGVRKVINAVSVIVGP--KEGDTPDRAKYSQGIKFFEPEIKG 229
N F GV K + + I P E T +++ + +P +KG
Sbjct: 65 SNA-----FDGVLKDVELICHIASPFFVENVTDNKS------QLLDPAVKG 104
>sp|P31808|YCIK_ECOLI Uncharacterized oxidoreductase YciK OS=Escherichia coli (strain
K12) GN=yciK PE=1 SV=3
Length = 252
Score = 37.7 bits (86), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 118 EPVKAMETSGIVLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGD 177
+P + + I+LV GA+ G+GR G V +L RNEEK R+ +
Sbjct: 4 QPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQ--------VASH 55
Query: 178 ITKENTLTPEYF 189
I +E P++F
Sbjct: 56 INEETGRQPQWF 67
>sp|P97412|LYST_MOUSE Lysosomal-trafficking regulator OS=Mus musculus GN=Lyst PE=1 SV=1
Length = 3788
Score = 37.0 bits (84), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 383 LRPIFQARTVLDAPP--FDPSNIVSLQ-----LMFSKFEYDGKLNPTFVEGAFQLPVSSI 435
LR + R L+ P F P +LQ +FSK+ + L P +EG QL +S +
Sbjct: 357 LRAALKIRACLEKQPEPFSPRQKKTLQEVQEGFVFSKYRHRALLLPELLEGVLQLLISCL 416
Query: 436 QSYIKDP 442
QS +P
Sbjct: 417 QSAASNP 423
>sp|Q9Y375|CIA30_HUMAN Complex I intermediate-associated protein 30, mitochondrial OS=Homo
sapiens GN=NDUFAF1 PE=1 SV=2
Length = 327
Score = 37.0 bits (84), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 272 WGALDDVVMGGVSESTFQIDRTGGENGAPTGLFKGVVSTA------NNGGFTSIRTR--- 322
W D +GG SE ++ G+N L+ + S A G+ ++ +R
Sbjct: 136 WTVTSDKTIGGRSEVFLKM----GKNNQSALLYGTLSSEAPQDGESTRSGYCAMISRIPR 191
Query: 323 ---NFAEPEDLSAYDGLKLRLKGDGRRYKFVVRTSSDW---DTVGYTASFDTVGG-QWQS 375
D S ++ L LR++GDGR + ++ +D+ Y+ T GG WQ
Sbjct: 192 GAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQE 251
Query: 376 IRLPFSSL 383
+++PFS
Sbjct: 252 VKIPFSKF 259
>sp|Q0MQ84|CIA30_PANTR Complex I intermediate-associated protein 30, mitochondrial OS=Pan
troglodytes GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 36.6 bits (83), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 272 WGALDDVVMGGVSESTFQIDRTGGENGAPTGLFKGVVSTA------NNGGFTSIRTR--- 322
W D +GG SE ++ G+N L+ + S A G+ ++ +R
Sbjct: 136 WTVTSDKTIGGRSEVFLKM----GKNNQSALLYGTLSSEAPQDGESTRSGYCAMISRIPR 191
Query: 323 ---NFAEPEDLSAYDGLKLRLKGDGRRYKFVVRTSSDW---DTVGYTASFDTVGG-QWQS 375
D S ++ L LR++GDGR + ++ +D+ Y+ T GG WQ
Sbjct: 192 GAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQE 251
Query: 376 IRLPFSSL 383
+++PFS
Sbjct: 252 VKIPFSKF 259
>sp|Q0MQ82|CIA30_PONPY Complex I intermediate-associated protein 30, mitochondrial
OS=Pongo pygmaeus GN=NDUFAF1 PE=2 SV=1
Length = 327
Score = 36.6 bits (83), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 272 WGALDDVVMGGVSESTFQIDRTGGENGAPTGLFKGVVSTA------NNGGFTSIRTR--- 322
W D +GG SE ++ G+N L+ + S A G+ ++ +R
Sbjct: 136 WTVTSDKTIGGRSEVFLKM----GKNNQSALLYGTLSSEAPHDGESTRSGYCAMISRIPR 191
Query: 323 ---NFAEPEDLSAYDGLKLRLKGDGRRYKFVVRTSSDW---DTVGYTASFDTVGG-QWQS 375
D S ++ L LR++GDGR + ++ +D+ Y+ T GG WQ
Sbjct: 192 GAFERKVSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGPYWQE 251
Query: 376 IRLPFSSL 383
+++PFS
Sbjct: 252 VKIPFSKF 259
>sp|Q9CWX2|CIA30_MOUSE Complex I intermediate-associated protein 30, mitochondrial OS=Mus
musculus GN=Ndufaf1 PE=2 SV=2
Length = 328
Score = 36.2 bits (82), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 23/150 (15%)
Query: 251 VGLQNGKLLFGFEENSLKELPWGALDDVVMGGVSESTFQIDRTGGENGAPTGLFKGVVST 310
V ++ ++++ F E + W D +GG SE ++ + + L G +S+
Sbjct: 117 VIMEQARVVWQFREKEDLD-KWIVTSDKTIGGRSEIFLKMSKNNR-----SALLYGTLSS 170
Query: 311 -------ANNGGFTSIRTR------NFAEPEDLSAYDGLKLRLKGDGRRYKFVVRTSSDW 357
+ G+ ++ +R D S ++ L LR++GDGR + +R +++
Sbjct: 171 EPPQDGDSRQSGYCAMISRIPRGAFERKLSYDWSQFNTLYLRVRGDGRPWMVNIRQDTEF 230
Query: 358 ---DTVGYTASFDTVGG-QWQSIRLPFSSL 383
Y+ T GG WQ +++PFS
Sbjct: 231 IQRKNQMYSYFMFTRGGPYWQEVKIPFSKF 260
>sp|Q8H0U5|TIC62_ARATH Protein TIC 62, chloroplastic OS=Arabidopsis thaliana GN=TIC62 PE=1
SV=1
Length = 641
Score = 35.8 bits (81), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 470 PAVRLNKELGFILTFKLKGEDLIRESGIPYTIVRPCALTEEPAGADLIFDQGDNIT---- 525
PA LN G +L +K K E+ + ESG+ Y IVRP + E P A + + N+T
Sbjct: 220 PAAILNLFWG-VLCWKRKAEEALIESGLNYAIVRPGGM-ERPTDA---YKETHNLTLALD 274
Query: 526 -----GKISREEVARICVAALESP-FALDKTFEV--KSTIPFS 560
G++S +VA + ++P + K EV ++T P +
Sbjct: 275 DTLFGGQVSNLQVAELLACMAKNPQLSFSKIVEVVAETTAPLT 317
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 69/172 (40%), Gaps = 47/172 (27%)
Query: 128 IVLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKA---------RKMLGPD-------- 170
+V VAGATG VG R V L G VR VR+ ++A K+ D
Sbjct: 83 LVFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAGSLVQSVKEMKLQNTDEGTQPVEK 142
Query: 171 VDLIVGDITKENTLTPEYFKGVRKVINAVSVIVGPKEGDTPDRAKYSQGIKFFEPEIKGD 230
++++ D+ K++++ P + + +G E + D I G
Sbjct: 143 LEIVECDLEKKDSIQPALGNA-----SVIICCIGASEKEISD--------------ITG- 182
Query: 231 SPEMVEYLGMRNLINAVKGSVGLQN-------GKLLFGFEENSLKELPWGAL 275
P ++YL +NL++A S + N G FGF L L WG L
Sbjct: 183 -PYRIDYLATKNLVDAAT-SAKVNNFILVTSLGTNKFGFPAAILN-LFWGVL 231
>sp|A5PJF6|HSDL1_BOVIN Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Bos taurus
GN=HSDL1 PE=2 SV=1
Length = 330
Score = 35.4 bits (80), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 9/58 (15%)
Query: 130 LVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDV--------DLIVGDIT 179
+V+GAT G+GR + L ++GL + ++ R++EK +M+ D+ D+IV D +
Sbjct: 71 VVSGATDGIGRAYAEELASRGLNIVLISRSQEKL-QMVAKDIADTYKVETDIIVADFS 127
>sp|Q3SXM5|HSDL1_HUMAN Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Homo
sapiens GN=HSDL1 PE=1 SV=3
Length = 330
Score = 35.4 bits (80), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 9/58 (15%)
Query: 130 LVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDV--------DLIVGDIT 179
+V+GAT G+G+ + L ++GL + ++ RNEEK +++ D+ D+IV D +
Sbjct: 71 VVSGATDGIGKAYAEELASRGLNIILISRNEEKL-QVVAKDIADTYKVETDIIVADFS 127
>sp|Q1R183|ISFD_CHRSD Sulfoacetaldehyde reductase OS=Chromohalobacter salexigens (strain
DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=isfD PE=1 SV=1
Length = 253
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 84/208 (40%), Gaps = 29/208 (13%)
Query: 129 VLVAGATGGVGRRVVDILRNKG----LPVRVLVRNEEKARKMLG-PDVDLIVGDITKENT 183
V + GAT G GR G L R L R E ++ G V +I D+ +
Sbjct: 5 VFITGATSGFGRAAAHRFAAAGWSLVLTGRRLERLEALKEELQGRVPVHIIALDVRDSDV 64
Query: 184 L------TPEYFKGVRKVINAVSVIVGPKEGDTPDRAKYSQGIKFFEPEIKGDS----PE 233
+ PE F VR ++N + + P+ DR+ + I + + P
Sbjct: 65 VDAAVAALPEGFTRVRTLLNNAGLALAPQSAQHTDRSDWHTMIDTNVTGLVNVTHALLPT 124
Query: 234 MVEYLGMRNLINAVKGSVGLQN---GKLLFGFEENSLKELPWGALDDVVMGGV------- 283
+++ ++N GS+ Q G ++G + +K+ + D++ GV
Sbjct: 125 LIDVGEGATIVNV--GSIAGQWPYPGSHVYGASKAFVKQFSYNLRCDLLGTGVRVTDLAP 182
Query: 284 --SESTFQIDRTGGENGAPTGLFKGVVS 309
+E+ F + RTGG+ A L++G +
Sbjct: 183 GIAETEFTLVRTGGDQAASDALYRGTTA 210
>sp|B1LY43|RPOB_METRJ DNA-directed RNA polymerase subunit beta OS=Methylobacterium
radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831)
GN=rpoB PE=3 SV=1
Length = 1374
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 16/131 (12%)
Query: 187 EYFKGVRKVIN-------AVSVIVGPKEGDTPDRAKYSQGIKFFEPEIKGDSPEMVEYLG 239
E KG++ ++ V + G K R +G KF +K ++V
Sbjct: 250 ERMKGMKATVDLIDADSGEVVLEAGKKLNARNARQITEKGTKF----LKATDEDLVGQYV 305
Query: 240 MRNLINAVKGSVGLQNG-----KLLFGFEENSLKELPWGALDDVVMGGVSESTFQIDRTG 294
+L+NA G + + G KLL EE + ELP +D V +G +T +D+
Sbjct: 306 AEDLVNAQTGEIWAEAGEEVTDKLLKSLEEVGITELPVLDIDHVNIGPYIRNTLAVDKNS 365
Query: 295 GENGAPTGLFK 305
GA +++
Sbjct: 366 NREGALFDIYR 376
>sp|Q5R7K0|HSDL1_PONAB Inactive hydroxysteroid dehydrogenase-like protein 1 OS=Pongo
abelii GN=HSDL1 PE=2 SV=1
Length = 330
Score = 34.7 bits (78), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 130 LVAGATGGVGRRVVDILRNKGLPVRVLVRNEEK 162
+V+GAT G+GR + L ++GL + ++ RNEEK
Sbjct: 71 VVSGATDGIGRAYAEELASRGLNIILISRNEEK 103
>sp|P73467|Y1223_SYNY3 Epimerase family protein slr1223 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1223 PE=3 SV=2
Length = 307
Score = 34.7 bits (78), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 129 VLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGDITKENTLTPEY 188
+++ GATG VG +V +L +G + +LVR+ KA+++ P + I E T + ++
Sbjct: 3 IILTGATGFVGCSLVPLLHQQGHELTLLVRSVSKAQRLFAPGSFPQLKAIAYEATKSGDW 62
Query: 189 FK---GVRKVIN 197
K G VIN
Sbjct: 63 QKVVDGQDAVIN 74
>sp|O52384|NAGB_RALSP 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase OS=Ralstonia sp.
GN=nagB PE=3 SV=2
Length = 259
Score = 33.9 bits (76), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 123 METSGIVLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKA---RKMLGPDVDLIVGDIT 179
M ++ + GA G+G +V + G V LVRNEE+ R ++++ GD+
Sbjct: 1 MNIQQVIAITGAGSGIGLELVRSFKAAGYCVSALVRNEEQEAGLRSEFKDAIEIVAGDVC 60
Query: 180 KENT 183
T
Sbjct: 61 DHAT 64
>sp|P73212|DFRA_SYNY3 Putative dihydroflavonol-4-reductase OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=dfrA PE=3 SV=1
Length = 343
Score = 33.9 bits (76), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 131 VAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGDI 178
V G TG VG +V L +G VR LVR + + +D +VGD+
Sbjct: 15 VTGGTGFVGANLVRHLLEQGYQVRALVRASSRPDNLQNLPIDWVVGDL 62
>sp|P0A169|NAHB_PSEPU 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase OS=Pseudomonas
putida GN=nahB PE=3 SV=1
Length = 259
Score = 33.9 bits (76), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 123 METSGIVLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKAR---KMLGPDVDLIVGDIT 179
M +V + GA G+G +V ++ G V LVRNEE+ K ++++VGD+
Sbjct: 1 MGNQQVVSITGAGSGIGLELVRSFKSAGYYVSALVRNEEQEALLCKEFKDALEIVVGDVR 60
Query: 180 KENT 183
T
Sbjct: 61 DHAT 64
>sp|P0A170|NAHB_PSEU8 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase OS=Pseudomonas
sp. (strain C18) GN=doxE PE=3 SV=1
Length = 259
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 123 METSGIVLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKAR---KMLGPDVDLIVGDIT 179
M +V + GA G+G +V ++ G V LVRNEE+ K ++++VGD+
Sbjct: 1 MGNQQVVSITGAGSGIGLELVRSFKSAGYYVSALVRNEEQEALLCKEFKDALEIVVGDVR 60
Query: 180 KENT 183
T
Sbjct: 61 DHAT 64
>sp|Q59027|Y1633_METJA Uncharacterized protein MJ1633 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1633 PE=4 SV=1
Length = 478
Score = 33.5 bits (75), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 136 GGVGRRVVDILRNKGLPVRVLVRNEEKARKMLGPDVDLIVGDITKENTL 184
G GR+VV+ ++NK P+ ++ +N + A ++ V +IVGD T++ L
Sbjct: 11 GSFGRKVVNFIKNKE-PITIIDKNIDDADDLVKEGVTVIVGDATQDEVL 58
>sp|O74959|YJCD_SCHPO Uncharacterized oxidoreductase C736.13 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCC736.13 PE=3 SV=1
Length = 339
Score = 33.1 bits (74), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 125 TSGIVLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEKARKML 167
T + LV G++GG+G L KG V + RNEEK +K++
Sbjct: 41 TGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVM 83
>sp|Q6GDV6|Y2567_STAAR Uncharacterized oxidoreductase SAR2567 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR2567 PE=3 SV=1
Length = 231
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 125 TSGIVLVAGATGGVGRRVVDILRNKGLPVRVLVRNEEK----ARKMLGPDVDLIVGDITK 180
T I +V GA G+G + +L +G V + RN++K A ++ V ++ D+TK
Sbjct: 5 TDKIAVVTGAGSGIGEAIATLLHEEGAKVVLAGRNKDKLQNVANQLAQDSVKVVPTDVTK 64
Query: 181 EN------TLTPEYFKGVRKVINAVSVIVGPKEGD 209
+ + + F G+ VIN+ ++ K D
Sbjct: 65 KEEVDELIKMAQQTFGGLDIVINSAGQMLSSKITD 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 235,931,019
Number of Sequences: 539616
Number of extensions: 10777472
Number of successful extensions: 26590
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 26550
Number of HSP's gapped (non-prelim): 77
length of query: 600
length of database: 191,569,459
effective HSP length: 123
effective length of query: 477
effective length of database: 125,196,691
effective search space: 59718821607
effective search space used: 59718821607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)