Query 047194
Match_columns 270
No_of_seqs 114 out of 148
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:40:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06206 CpeT: CpeT/CpcT famil 100.0 6.9E-62 1.5E-66 423.9 17.3 173 51-237 1-179 (179)
2 TIGR03867 MprA_tail MprA prote 51.9 24 0.00053 22.3 3.1 20 19-38 5-24 (27)
3 PF07172 GRP: Glycine rich pro 35.7 34 0.00075 27.3 2.6 26 24-49 3-28 (95)
4 cd05886 Ig1_Nectin-1_like Firs 29.3 87 0.0019 24.6 3.9 63 75-140 18-80 (99)
5 cd05887 Ig1_Nectin-3_like Firs 24.5 1.2E+02 0.0026 23.8 3.9 62 75-139 15-76 (96)
6 PF01851 PC_rep: Proteasome/cy 24.4 1E+02 0.0023 19.9 3.0 28 31-58 1-28 (35)
7 PLN02595 cytochrome c oxidase 23.7 88 0.0019 25.6 3.0 23 66-88 69-91 (102)
8 cd05889 Ig1_DNAM-1_like First 21.9 1.6E+02 0.0035 23.0 4.2 62 75-139 15-76 (96)
9 cd06845 Bcl-2_like Apoptosis r 20.9 1.5E+02 0.0034 24.4 4.1 33 24-58 90-122 (144)
10 PF02038 ATP1G1_PLM_MAT8: ATP1 20.2 1.2E+02 0.0025 21.9 2.7 19 18-36 15-33 (50)
11 PF10626 TraO: Conjugative tra 20.2 1.7E+02 0.0037 26.0 4.3 56 175-236 104-159 (168)
No 1
>PF06206 CpeT: CpeT/CpcT family (DUF1001); InterPro: IPR010404 This family consists of proteins of unknown function. These proteins are around 200 amino acids in length. The proteins contain a conserved motif PYR in the N-terminal half of the protein that may be functionally important. The species distribution of the family is interesting. So far it is restricted to cyanobacteria, cryptomonads and plants. This suggests that this protein may be involved in some aspect of a photosynthetic lifestyle.
Probab=100.00 E-value=6.9e-62 Score=423.87 Aligned_cols=173 Identities=36% Similarity=0.598 Sum_probs=162.0
Q ss_pred HHHHHhccccCCHHHHhhCCCCcceeEEEEeeCccccCCceeEEEEEeccCCCCCCceeeeEEEEeCCCCCcceEEEEee
Q 047194 51 IVADSLSGEKFSKEQASRDPDNFFNIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSY 130 (270)
Q Consensus 51 ~la~~LaGefsN~eQA~~nP~~fahIrv~~rPL~~~~~~g~~lY~EQay~~~p~~PYRQRv~rl~~~~d~~~~~I~venY 130 (270)
+|++||+|+|||++||++||++|+||+|+||||++..+++++||+||||+++|++|||||||||++++++ .|+++||
T Consensus 1 ~l~~~L~G~fsN~~QA~~~P~~~~~I~i~~rpl~~~~~~~~~~y~EQay~~~p~~PYRqri~~~~~~~~~---~i~~~nY 77 (179)
T PF06206_consen 1 TLASWLAGEFSNQEQAQENPPWFAHIRIWFRPLPWFFFDGIGFYSEQAYDYDPDKPYRQRIHRIVPVPDG---SIEVENY 77 (179)
T ss_pred ChHHhceeccCCHHHHhhCCcccceEEEEEEECCcccCCCcEEEEEEEecCCCCCCcEeeEEEEEecCCC---eEEEEEe
Confidence 4899999999999999999999999999999999999999999999999999999999999999999654 7999999
Q ss_pred eecchhhhccccCCCCCCCCChhhhhhhcc-ccccccccCCCcCC---CCccEEeeCCCCCcccccC-CCeeEEEEEEEE
Q 047194 131 AIREVEEYKNFCDRPRDQRPLPEEVIGDIG-EHLTTIHLRRCDRG---KRCLYEGSTPPGGFPNSWQ-NGATYSTSELAV 205 (270)
Q Consensus 131 ~lkd~~~f~Ga~~~p~~~r~~~~~ll~~lt-d~L~~~~l~gC~~~---~~~~f~G~vePG~~c~~~~-g~~tYL~Se~el 205 (270)
+|+|+++|+|||++| ++|+.|+ ++|+. ++||+|. ++..|+|+++||++|.+.+ |+.|||+|+|+|
T Consensus 78 ~l~d~~~~~ga~~~p--------~~l~~l~~~~L~~--~~gC~~~~~~~~~~f~G~~~pg~~C~~~~~G~~tyl~s~~~l 147 (179)
T PF06206_consen 78 KLKDPERFAGAGRDP--------ELLKSLTPEDLEL--LPGCDMIFTRQGEGFHGSVEPGKRCLVNRDGKATYLVSEFEL 147 (179)
T ss_pred ccCCHHHHCCcccCh--------hHhccCCHHHhhc--cCCCeEEEEEcCCeeEEEcCCCCcceEEcCCcEEEEEEEEEE
Confidence 999999999999999 6788888 89965 8999986 5568999999999888865 779999999999
Q ss_pred eeCccEEEeeeecCCC-CCceecCCCCCceEEe
Q 047194 206 LKNNEIHTWDRGFDDD-GNQVWGVKAGPYEFKP 237 (270)
Q Consensus 206 ~~~~~~~S~DRG~D~e-geqVWGS~~Gpf~F~r 237 (270)
+++ +|+|+||||||+ |++||||++|||+|+|
T Consensus 148 ~~~-~~~s~DrG~Dp~t~~~vWGs~~Gp~~f~k 179 (179)
T PF06206_consen 148 TEN-ELISWDRGYDPETGEQVWGSEAGPYRFKK 179 (179)
T ss_pred cCC-EEEEEEeeecCCCCCEeecCCCCceeecC
Confidence 988 699999999988 7999999999999997
No 2
>TIGR03867 MprA_tail MprA protease C-terminal sorting domain. This model describes a protein C-terminal domain that occurs in species of the genus Ralstonia and is predicted to play a role in protein targeting. This sequence, though limited to members of the MprA serine in species distribution, resembles C-terminal sorting sequences of the sortase and exosortase systems, as well as a Shewanella-type C-terminal sequence modeled by TIGR03501. For all such cases, member proteins have homologs in other species with essentially full-length homology, save for the lack of the domain modeled here. All members of the present family are predicted serine proteases
Probab=51.94 E-value=24 Score=22.31 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 047194 19 AQGLFVKAAVLIGGAVLLKR 38 (270)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~ 38 (270)
+-.+..++|++..++++.++
T Consensus 5 ai~~~~A~Lll~aG~~~~~r 24 (27)
T TIGR03867 5 AIAPWLAALLLAAGLLGFAR 24 (27)
T ss_pred hhHHHHHHHHHHHHhhhHHh
Confidence 45588899999999988854
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=35.69 E-value=34 Score=27.31 Aligned_cols=26 Identities=23% Similarity=0.112 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHH
Q 047194 24 VKAAVLIGGAVLLKRLTKSKTRWDHA 49 (270)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~s~~~~~~~ 49 (270)
-|++||++.+|+.-+|.-|...+.++
T Consensus 3 SK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 37788888887776777776654443
No 4
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=29.26 E-value=87 Score=24.61 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=38.9
Q ss_pred eeEEEEeeCccccCCceeEEEEEeccCCCCCCceeeeEEEEeCCCCCcceEEEEeeeecchhhhcc
Q 047194 75 NIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSYAIREVEEYKN 140 (270)
Q Consensus 75 hIrv~~rPL~~~~~~g~~lY~EQay~~~p~~PYRQRv~rl~~~~d~~~~~I~venY~lkd~~~f~G 140 (270)
-.+|.|.++.......+.+|.-+.. .....||+.||.-+.+.... ..|.|.|=++.|.-.|.-
T Consensus 18 ~~~V~W~k~~~~~~~~va~y~~~~g-~~~~~~f~~Rv~f~~~~~~d--aSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 18 ITQVTWQKLTNGSKQNVAIYNPSMG-VSVLPPYRERVTFKNPSFED--GTISLSRLELEDEGVYIC 80 (99)
T ss_pred eEEEEEEECCCCCceEEEEECCcCC-cccCccccCcEEEcCCCCCc--ceEEEcCCccccCEEEEE
Confidence 3578888765322223444543322 23456999999876533322 369999999888776664
No 5
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=24.48 E-value=1.2e+02 Score=23.82 Aligned_cols=62 Identities=6% Similarity=-0.036 Sum_probs=37.9
Q ss_pred eeEEEEeeCccccCCceeEEEEEeccCCCCCCceeeeEEEEeCCCCCcceEEEEeeeecchhhhc
Q 047194 75 NIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSYAIREVEEYK 139 (270)
Q Consensus 75 hIrv~~rPL~~~~~~g~~lY~EQay~~~p~~PYRQRv~rl~~~~d~~~~~I~venY~lkd~~~f~ 139 (270)
..+|.|..++......+..|..+ |......||+.||.-..+.. +...|.|.|=++.|.-.|.
T Consensus 15 ~~qV~W~k~~~~~~~~ia~y~~~-~g~~~~~~y~~Rv~~~~~~~--~d~sl~i~nv~~~D~G~Y~ 76 (96)
T cd05887 15 ITQSSWEKIHGKGSVTLAVHHPM-YGISIQPDYQGRVSFKNYSL--LDATIMLENVGFSDIGVYI 76 (96)
T ss_pred EEEEEEEEcCCCCcEEEEEEccc-CCcccChhhCCcEEEcCCCC--CccEEEEeCCCccccEEEE
Confidence 46788887653222233445444 44555679998887653322 2347899998888865555
No 6
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=24.36 E-value=1e+02 Score=19.85 Aligned_cols=28 Identities=14% Similarity=0.088 Sum_probs=18.6
Q ss_pred HHHHHHHHhhccccchHHHHHHHHHhcc
Q 047194 31 GGAVLLKRLTKSKTRWDHARIVADSLSG 58 (270)
Q Consensus 31 ~~~~~~~~~~~s~~~~~~~~~la~~LaG 58 (270)
|+++++++++..+.+.+-+..|..++.-
T Consensus 1 gA~lgLGl~~aGs~~~~~~~~L~~~l~~ 28 (35)
T PF01851_consen 1 GAILGLGLIYAGSGNEEVLDLLRPYLSD 28 (35)
T ss_dssp HHHHHHHHHTTTT--HHHHHHHHHHHCT
T ss_pred CcHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 5778899999999885555566666543
No 7
>PLN02595 cytochrome c oxidase subunit VI protein
Probab=23.67 E-value=88 Score=25.64 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=19.3
Q ss_pred HhhCCCCcceeEEEEeeCccccC
Q 047194 66 ASRDPDNFFNIRMLTCPAAEMVD 88 (270)
Q Consensus 66 A~~nP~~fahIrv~~rPL~~~~~ 88 (270)
..+.|+-|.|.+|+.+|.||--+
T Consensus 69 ~~e~p~~Y~yLrIRtK~FPWG~D 91 (102)
T PLN02595 69 HGEDPPAYPYMHIRNKEFPWGPD 91 (102)
T ss_pred cCCCCCCCCcceeecCCCCCCCC
Confidence 36778899999999999999543
No 8
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=21.91 E-value=1.6e+02 Score=23.03 Aligned_cols=62 Identities=11% Similarity=0.143 Sum_probs=38.2
Q ss_pred eeEEEEeeCccccCCceeEEEEEeccCCCCCCceeeeEEEEeCCCCCcceEEEEeeeecchhhhc
Q 047194 75 NIRMLTCPAAEMVDGSKLLYLEQAFWRTPQKPFRQRFYMVKPCPKELKCDVEVSSYAIREVEEYK 139 (270)
Q Consensus 75 hIrv~~rPL~~~~~~g~~lY~EQay~~~p~~PYRQRv~rl~~~~d~~~~~I~venY~lkd~~~f~ 139 (270)
-++|.|..++......+..|..+ |......||..||.-...... ...|.|.|=++.|.-.|.
T Consensus 15 ~~qV~W~k~~~~~~~~iavy~~~-~g~~~~~~y~~Rv~f~~~~~~--d~sI~i~nvt~~D~G~Y~ 76 (96)
T cd05889 15 LIQVSWTKHNGSHKENIAVYHPI-YGMHIEDKYRGRVYFLNSTRE--DMSLSFNNATEEDVGLYC 76 (96)
T ss_pred EEEEEEEEcCCCCCceEEEEECC-CCCEECccccCeEEEecCCCC--ccEEEEcCCCcccCEEEE
Confidence 56677776653222234555554 455556799999876643221 247899998888865555
No 9
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=20.87 E-value=1.5e+02 Score=24.42 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHhcc
Q 047194 24 VKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLSG 58 (270)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~la~~LaG 58 (270)
|.||+.+|+.++.+.+-+. +.+.+..++.|++-
T Consensus 90 Ival~~f~~~la~~~~~~~--~~~~v~~i~~~~~~ 122 (144)
T cd06845 90 IVALFAFGGRLAVKCVEQG--LPELVRSIAEWTSD 122 (144)
T ss_pred HHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHH
Confidence 6688889999988777665 45688888888764
No 10
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=20.24 E-value=1.2e+02 Score=21.92 Aligned_cols=19 Identities=26% Similarity=0.551 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 047194 18 RAQGLFVKAAVLIGGAVLL 36 (270)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ 36 (270)
|..|+++|+++.+.|.+.+
T Consensus 15 rigGLi~A~vlfi~Gi~ii 33 (50)
T PF02038_consen 15 RIGGLIFAGVLFILGILII 33 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHH
Confidence 6789999988777666543
No 11
>PF10626 TraO: Conjugative transposon protein TraO; InterPro: IPR018899 This is a family of conjugative transposon proteins.
Probab=20.17 E-value=1.7e+02 Score=26.01 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=39.6
Q ss_pred CCccEEeeCCCCCcccccCCCeeEEEEEEEEeeCccEEEeeeecCCCCCceecCCCCCceEE
Q 047194 175 KRCLYEGSTPPGGFPNSWQNGATYSTSELAVLKNNEIHTWDRGFDDDGNQVWGVKAGPYEFK 236 (270)
Q Consensus 175 ~~~~f~G~vePG~~c~~~~g~~tYL~Se~el~~~~~~~S~DRG~D~egeqVWGS~~Gpf~F~ 236 (270)
+.-.|.|.+-..+-+-+. |++..+..|+.|+ |. +..+=++ ...-+|||..|.||..
T Consensus 104 ~~lL~DGatL~~~~~FiY-Gga~~le~E~yLs-Dr-ivll~~~---reR~l~Gs~~~~Fh~~ 159 (168)
T PF10626_consen 104 KKLLYDGATLLNRDRFIY-GGAVTLEIETYLS-DR-IVLLVNG---RERFLWGSDLGHFHTQ 159 (168)
T ss_pred ceeccCccCccCCCcEEE-eccceEEEEEEEe-ee-EEEEEee---eEEEEecCccCceeEe
Confidence 334688888777755554 8888888888887 43 5444333 3468899999999975
Done!