Query 047194
Match_columns 270
No_of_seqs 114 out of 148
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 15:04:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ohu_A Apoptosis regulator CED 23.7 73 0.0025 26.7 4.0 33 24-57 104-136 (175)
2 2jp3_A FXYD domain-containing 20.6 67 0.0023 23.4 2.7 19 18-36 18-36 (67)
3 2w3l_A BCL2-XL, apoptosis regu 19.6 1.1E+02 0.0038 24.3 4.2 32 24-57 85-116 (144)
4 2a5y_A Apoptosis regulator CED 18.3 1E+02 0.0035 26.6 3.9 33 24-57 124-156 (204)
5 2y6w_A BCL-2-like protein 2; a 18.3 1.1E+02 0.0038 25.5 4.0 32 24-57 109-140 (177)
6 2jo1_A Phospholemman; FXYD1, N 18.0 82 0.0028 23.2 2.7 19 18-36 17-35 (72)
7 3sp7_A BCL-2-like protein 1; a 17.1 1.1E+02 0.0039 25.4 3.8 32 24-57 103-134 (172)
8 4aq3_A Apoptosis regulator BCL 15.9 1.5E+02 0.0051 24.6 4.2 32 24-57 109-140 (169)
9 1ejp_A Syndecan-4; symmetric-p 15.8 40 0.0014 20.6 0.4 13 258-270 2-14 (28)
10 2ks1_B Epidermal growth factor 15.4 2.1E+02 0.0072 18.9 4.0 22 17-38 16-37 (44)
No 1
>1ohu_A Apoptosis regulator CED-9; BCL-2 family; 2.03A {Caenorhabditis elegans} SCOP: f.1.4.1 PDB: 1ty4_A
Probab=23.72 E-value=73 Score=26.73 Aligned_cols=33 Identities=21% Similarity=0.118 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHhc
Q 047194 24 VKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLS 57 (270)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~la~~La 57 (270)
|.+|+.+||.++.+.+- +..+.+.+..++.|++
T Consensus 104 IVaLfaF~g~La~~~v~-~~~~~~~v~~I~~~~~ 136 (175)
T 1ohu_A 104 LIGLISFGGFVAAKMME-SVELQGQVRNLFVYTS 136 (175)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHH
Confidence 45788899999986654 2345568888888865
No 2
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=20.57 E-value=67 Score=23.39 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 047194 18 RAQGLFVKAAVLIGGAVLL 36 (270)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ 36 (270)
|..||++++++.+.|++.+
T Consensus 18 RigGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 18 QLGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eecchhhHHHHHHHHHHHH
Confidence 6789999988776666543
No 3
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=19.64 E-value=1.1e+02 Score=24.33 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHhc
Q 047194 24 VKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLS 57 (270)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~la~~La 57 (270)
|.||+.+|+.++.+.+-+.. .+.+..++.|++
T Consensus 85 IValf~F~g~la~~~~~~~~--~~~v~~i~~~~~ 116 (144)
T 2w3l_A 85 IVAFFEFGGVMCVESVNREM--SPLVDNIALWMT 116 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccC--hHHHHHHHHHHH
Confidence 56788888988887776543 457778887764
No 4
>2a5y_A Apoptosis regulator CED-9; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: f.1.4.1
Probab=18.31 E-value=1e+02 Score=26.56 Aligned_cols=33 Identities=21% Similarity=0.118 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHhc
Q 047194 24 VKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLS 57 (270)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~la~~La 57 (270)
|.+|+.+||.++.+.+- +....+.+..++.|++
T Consensus 124 IVaLfaF~g~La~~~v~-~~~~~~~V~~I~~w~~ 156 (204)
T 2a5y_A 124 LIGLISFGGFVAAKMME-SVELQGQVRNLFVYTS 156 (204)
T ss_dssp HHHHHHHHHHHHHHHHT-STTSSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hcCChhHHHHHHHHHH
Confidence 55788899999987664 1334467888888865
No 5
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=18.31 E-value=1.1e+02 Score=25.48 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHhc
Q 047194 24 VKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLS 57 (270)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~la~~La 57 (270)
|.+|+.+|+.++.+.+-+.. .+.+..++.|++
T Consensus 109 IVaLfaF~g~La~~~~~~~~--~~~v~~I~~~~~ 140 (177)
T 2y6w_A 109 LVAFFVFGAALCAESVNKEM--EPLVGQVQEWMV 140 (177)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHH
Confidence 56788899999998776653 457888888875
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=17.99 E-value=82 Score=23.20 Aligned_cols=19 Identities=21% Similarity=0.499 Sum_probs=13.8
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 047194 18 RAQGLFVKAAVLIGGAVLL 36 (270)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ 36 (270)
|..||++++++.+.|++.+
T Consensus 17 RiGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 17 QIGGLVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHH
Confidence 5778999887776665544
No 7
>3sp7_A BCL-2-like protein 1; apoptosis regulator-inhibitor complex; HET: 03B; 1.40A {Homo sapiens} PDB: 2lp8_A* 2lpc_A 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 4ehr_A* 3spf_A* 2pon_B 3r85_A 2p1l_A 4a1u_A* 2yj1_A 2yq7_A 2yq6_A 3fdm_A ...
Probab=17.14 E-value=1.1e+02 Score=25.40 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHhc
Q 047194 24 VKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLS 57 (270)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~la~~La 57 (270)
|.+|+.+|+.++.+.+-+. +.+.+..+++|++
T Consensus 103 IVaLfaF~g~la~~~~~~~--~~~~v~~i~~~~~ 134 (172)
T 3sp7_A 103 IVAFFSFGGALCVESVDKE--MQVLVSRIAAWMA 134 (172)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHH
Confidence 4578888888888766553 3457778888876
No 8
>4aq3_A Apoptosis regulator BCL-2, BCL-2-like protein 1; chimera; HET: 398; 2.40A {Homo sapiens} PDB: 1g5m_A 1gjh_A 1ysw_A* 2o21_A* 2o22_A*
Probab=15.86 E-value=1.5e+02 Score=24.64 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHhc
Q 047194 24 VKAAVLIGGAVLLKRLTKSKTRWDHARIVADSLS 57 (270)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~la~~La 57 (270)
|.||+.+|+.++.+.+-+.. .+.+..+++|++
T Consensus 109 IVaLfaF~g~La~~~~~~~~--~~~v~~I~~~~~ 140 (169)
T 4aq3_A 109 IVAFFEFGGVMCVESVNREM--SPLVDNIALWMT 140 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC--hHHHHHHHHHHH
Confidence 45788888888887775543 456777877775
No 9
>1ejp_A Syndecan-4; symmetric-parallel-interwinded dimer, signaling protein; NMR {Synthetic} SCOP: j.80.1.1 PDB: 1ejq_A
Probab=15.80 E-value=40 Score=20.60 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=10.9
Q ss_pred hhcccccceeecC
Q 047194 258 LEKRIEGSFVLQE 270 (270)
Q Consensus 258 ~~~~~~~~~~~~~ 270 (270)
|.|+=+|||.|++
T Consensus 2 mrKKDEGSY~Lde 14 (28)
T 1ejp_A 2 MKKKDEGSYDLGK 14 (28)
T ss_dssp CSCCCCCCCCCCS
T ss_pred cccccccccccCC
Confidence 6788899999875
No 10
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=15.43 E-value=2.1e+02 Score=18.91 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=11.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 047194 17 GRAQGLFVKAAVLIGGAVLLKR 38 (270)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~ 38 (270)
|-.-|+++-++++++..|.+|+
T Consensus 16 gVVgGv~~~~ii~~~~~~~~RR 37 (44)
T 2ks1_B 16 GMVGALLLLLVVALGIGLFMRR 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred ehhHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555555555544
Done!