Query 047201
Match_columns 772
No_of_seqs 283 out of 1554
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 08:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047201.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047201hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03144 Carbon catabolite rep 100.0 1.7E-61 3.7E-66 549.8 31.1 202 186-397 251-482 (606)
2 KOG2338 Transcriptional effect 100.0 1.8E-55 3.8E-60 482.8 23.8 441 82-768 19-494 (495)
3 COG5239 CCR4 mRNA deadenylase, 100.0 1.3E-42 2.9E-47 369.6 16.2 190 189-394 30-266 (378)
4 KOG0620 Glucose-repressible al 100.0 2.5E-41 5.5E-46 366.5 11.9 206 173-397 3-248 (361)
5 TIGR03395 sphingomy sphingomye 99.8 1.1E-18 2.4E-23 184.4 18.9 173 190-393 1-200 (283)
6 PRK11756 exonuclease III; Prov 99.7 2.2E-16 4.8E-21 163.5 18.3 152 190-386 1-159 (268)
7 PRK05421 hypothetical protein; 99.7 2.3E-16 5E-21 164.4 16.5 161 188-392 42-206 (263)
8 smart00476 DNaseIc deoxyribonu 99.7 1.6E-15 3.4E-20 160.6 18.4 170 188-391 16-200 (276)
9 COG3568 ElsH Metal-dependent h 99.6 9.6E-16 2.1E-20 160.5 12.6 168 189-397 9-191 (259)
10 PF03372 Exo_endo_phos: Endonu 99.6 1.1E-14 2.4E-19 140.9 18.2 149 222-385 15-171 (249)
11 TIGR00195 exoDNase_III exodeox 99.6 9.4E-14 2E-18 142.7 18.6 147 190-385 1-153 (254)
12 TIGR00633 xth exodeoxyribonucl 99.6 6.5E-14 1.4E-18 142.1 16.8 147 190-384 1-155 (255)
13 PTZ00297 pantothenate kinase; 99.5 1.3E-12 2.9E-17 163.0 19.0 176 187-394 8-227 (1452)
14 COG0708 XthA Exonuclease III [ 99.4 1.3E-12 2.8E-17 137.3 15.1 149 190-385 1-155 (261)
15 KOG2756 Predicted Mg2+-depende 99.4 9E-12 1.9E-16 130.4 15.3 183 188-414 98-283 (349)
16 KOG3873 Sphingomyelinase famil 99.4 8.8E-13 1.9E-17 142.2 8.0 185 188-411 7-207 (422)
17 PRK13911 exodeoxyribonuclease 99.3 3.5E-11 7.5E-16 125.8 15.0 144 190-384 1-150 (250)
18 PRK15251 cytolethal distending 99.2 2.8E-10 6E-15 120.6 14.2 157 188-392 23-206 (271)
19 COG2374 Predicted extracellula 98.8 6.5E-08 1.4E-12 112.8 15.5 211 173-395 446-699 (798)
20 COG3021 Uncharacterized protei 98.4 2E-06 4.3E-11 92.9 10.7 159 187-393 86-245 (309)
21 smart00128 IPPc Inositol polyp 98.3 1.7E-05 3.7E-10 85.8 15.2 66 329-394 136-209 (310)
22 KOG0566 Inositol-1,4,5-triphos 96.7 0.011 2.5E-07 71.5 12.1 131 271-417 624-768 (1080)
23 KOG1924 RhoA GTPase effector D 94.0 0.075 1.6E-06 63.6 5.5 17 133-149 566-582 (1102)
24 COG5239 CCR4 mRNA deadenylase, 93.2 0.084 1.8E-06 58.7 4.1 79 680-769 287-367 (378)
25 PF14529 Exo_endo_phos_2: Endo 91.3 0.3 6.4E-06 44.0 4.5 25 358-382 18-42 (119)
26 PRK11756 exonuclease III; Prov 87.8 0.26 5.7E-06 51.6 1.6 68 686-767 194-268 (268)
27 PLN03191 Type I inositol-1,4,5 87.7 1.9 4.2E-05 51.3 8.6 55 330-384 419-483 (621)
28 KOG1924 RhoA GTPase effector D 87.4 0.82 1.8E-05 55.3 5.4 8 215-222 625-632 (1102)
29 PTZ00312 inositol-1,4,5-tripho 87.1 2.5 5.4E-05 46.6 8.4 62 329-392 78-151 (356)
30 PTZ00297 pantothenate kinase; 86.8 0.52 1.1E-05 61.2 3.7 48 718-770 270-317 (1452)
31 COG3021 Uncharacterized protei 86.2 0.36 7.8E-06 53.1 1.6 36 718-768 273-308 (309)
32 KOG2236 Uncharacterized conser 84.7 2.9 6.2E-05 48.2 7.7 8 68-75 377-384 (483)
33 PF10873 DUF2668: Protein of u 78.7 2.6 5.7E-05 41.9 4.1 30 17-46 30-59 (155)
34 KOG1976 Inositol polyphosphate 75.3 6.8 0.00015 43.4 6.5 65 328-394 166-242 (391)
35 COG3568 ElsH Metal-dependent h 75.2 3.4 7.5E-05 44.6 4.2 74 678-768 183-258 (259)
36 TIGR00195 exoDNase_III exodeox 74.1 1.8 3.9E-05 45.0 1.8 38 719-765 215-254 (254)
37 PRK05421 hypothetical protein; 73.1 2.8 6E-05 44.4 3.0 39 716-769 225-263 (263)
38 COG5411 Phosphatidylinositol 5 64.5 18 0.00039 41.9 7.1 52 331-382 165-218 (460)
39 TIGR00633 xth exodeoxyribonucl 63.4 5.5 0.00012 40.7 2.7 35 718-765 218-254 (255)
40 PRK13911 exodeoxyribonuclease 62.3 4.9 0.00011 42.7 2.1 80 662-766 164-250 (250)
41 KOG1294 Apurinic/apyrimidinic 52.0 19 0.00041 40.4 4.6 128 231-384 85-226 (335)
42 KOG3873 Sphingomyelinase famil 51.8 13 0.00029 42.1 3.3 48 717-770 246-295 (422)
43 COG5178 PRP8 U5 snRNP spliceos 49.8 13 0.00028 47.4 3.0 9 136-144 24-32 (2365)
44 KOG0565 Inositol polyphosphate 45.8 45 0.00098 32.2 5.6 56 330-385 58-123 (145)
45 COG0708 XthA Exonuclease III [ 42.0 7.9 0.00017 42.0 -0.2 52 709-767 203-261 (261)
46 KOG3168 U1 snRNP component [Tr 42.0 31 0.00067 35.3 3.9 15 124-138 158-173 (177)
47 PF09849 DUF2076: Uncharacteri 37.1 49 0.0011 35.8 4.7 27 106-132 91-117 (247)
48 KOG1923 Rac1 GTPase effector F 35.2 68 0.0015 39.7 5.9 13 188-200 367-379 (830)
49 PRK15251 cytolethal distending 29.4 33 0.00071 37.6 1.9 12 752-763 257-268 (271)
50 KOG2236 Uncharacterized conser 29.0 1E+02 0.0022 36.3 5.7 22 87-108 367-388 (483)
51 PRK09752 adhesin; Provisional 26.5 67 0.0015 41.6 4.1 11 142-152 946-959 (1250)
52 COG1407 Predicted ICC-like pho 25.7 1E+02 0.0022 33.3 4.7 53 329-381 19-75 (235)
53 PF03372 Exo_endo_phos: Endonu 24.3 47 0.001 32.2 1.9 13 718-730 219-231 (249)
54 KOG4849 mRNA cleavage factor I 24.0 2E+02 0.0043 32.9 6.7 21 141-161 275-297 (498)
55 PF11705 RNA_pol_3_Rpc31: DNA- 22.8 1.1E+02 0.0024 32.3 4.4 11 64-74 3-13 (233)
56 TIGR03395 sphingomy sphingomye 21.6 83 0.0018 34.1 3.3 50 712-764 228-282 (283)
57 KOG4761 Proteasome formation i 21.6 3.4E+02 0.0075 29.7 7.6 14 65-78 176-189 (266)
58 PRK15319 AIDA autotransporter- 21.2 48 0.001 44.6 1.5 25 142-167 1723-1753(2039)
59 KOG2756 Predicted Mg2+-depende 21.0 28 0.0006 38.4 -0.5 42 720-765 303-347 (349)
60 TIGR00024 SbcD_rel_arch putati 20.4 2.5E+02 0.0053 29.7 6.3 52 330-381 15-70 (225)
61 cd08165 MPP_MPPE1 human MPPE1 20.1 1.1E+02 0.0025 30.0 3.6 49 334-382 2-51 (156)
No 1
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=100.00 E-value=1.7e-61 Score=549.76 Aligned_cols=202 Identities=38% Similarity=0.646 Sum_probs=167.8
Q ss_pred CCCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecc--hhh-HHHHHHhCCceE
Q 047201 186 YSERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR--FQD-LEVELKFRGYTG 262 (772)
Q Consensus 186 ~~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~--f~d-L~~~L~~~GY~g 262 (772)
....|||||||||++.|+. +++|.|||+++++|++|+++|+++|..++|||||||||+. |++ +.+.|.++||.+
T Consensus 251 ~~~~frVmSYNILAd~ya~---~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~G 327 (606)
T PLN03144 251 SAGTFTVLSYNILSDLYAT---SDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQA 327 (606)
T ss_pred CCCCEEEEEeeeccccccC---cccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceE
Confidence 3578999999999999885 5799999999999999999999999999999999999976 655 588999999999
Q ss_pred EEecCCCC-------CceeEEEEEccCcceeEEeeeeeccCCC--------------------CCCceeEEEEEEEeccc
Q 047201 263 IWKMRTGN-------AIDGCAIFWRASRFKLLYEEGIEFNKLG--------------------LRDNVAQICVLELLSQN 315 (772)
Q Consensus 263 vf~~Rtg~-------~~dG~AIFyRrSRF~LL~~e~I~fs~lg--------------------lrdnVaqi~vLe~Lr~~ 315 (772)
+|..|++. ..||||||||++||++++...|.|+... +++|++++++|+....
T Consensus 328 v~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~~- 406 (606)
T PLN03144 328 LYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKFG- 406 (606)
T ss_pred EEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEEEEEEEecc-
Confidence 99877542 5899999999999999999888776421 2466777777775310
Q ss_pred ccccccCCCCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHHHHHHHhCC
Q 047201 316 FTENSAALPTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPLYNFILEQK 395 (772)
Q Consensus 316 ~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~vYr~Ls~~~ 395 (772)
..... ....++.|+|+||||+|+|...++|+.|++.|++.|+++++. .++|||||||||++|+|++|++|++|.
T Consensus 407 ----~~~~~-~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~~-~~~PvIlcGDFNS~P~S~vy~lLt~G~ 480 (606)
T PLN03144 407 ----NQGAD-NGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAAS-ADIPMLVCGDFNSVPGSAPHCLLATGK 480 (606)
T ss_pred ----ccccc-CCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhhc-CCCceEEeccCCCCCCChhhhhhhcCC
Confidence 00000 012346799999999999999999999999999999998642 479999999999999999999999875
Q ss_pred CC
Q 047201 396 LD 397 (772)
Q Consensus 396 Ld 397 (772)
++
T Consensus 481 v~ 482 (606)
T PLN03144 481 VD 482 (606)
T ss_pred cC
Confidence 53
No 2
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=100.00 E-value=1.8e-55 Score=482.75 Aligned_cols=441 Identities=30% Similarity=0.416 Sum_probs=320.1
Q ss_pred CCCceecCCcccccccccccccccCCCCCCCCC--CCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 047201 82 ANGRFVSGDSHISSVSNSNRGVRQGNYTAVPPA--PFYQNQ--PFRQPPPYNQNQQFRPPPLYNRNPQFRRPRPPFDQNQ 157 (772)
Q Consensus 82 ~~~~~~~gd~h~~~v~~~n~~~r~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~pf~~~~ 157 (772)
.+.+.+++|+|.++++++|.+++ +.+++.|+. .++..| ..+ +-+++....-+...|.++.+. .||= -..
T Consensus 19 ~~~~~~~~~s~~~~s~~~l~~~~-~~~~~~~~s~~~~t~~~~~k~r---~~~~~~~~~~~~~~~~~~~~~--~~p~-p~~ 91 (495)
T KOG2338|consen 19 VRWPGISMDSHKQRSSLSLFSLN-EPSRASPRSRCQVTPLQAKKIR---SERFSKAKKDRNSKPRNGMRA--AIPR-PNL 91 (495)
T ss_pred hccccccccccccccchhhcccC-CccccCCCccccCCHHHhhhcc---HHHHHhhhhcccccccccccc--CCCC-cch
Confidence 56678999999999999999999 555443322 111111 111 233333444455555444443 2221 011
Q ss_pred ccccCCCCCCCCCCCCcccccccCCCCCCCCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCC
Q 047201 158 AVQSRPRPRPPKPLDYRNWEHSKASLPPYSERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSA 237 (772)
Q Consensus 158 ~f~~~~~~~p~~~~~~R~W~~~~~~~~~~~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dP 237 (772)
.|.+ +|-.. ..+.|..+.. ++....|+||||||||+.+...+++.+|+ |++.+|+|.+|.+.|++||..|+|
T Consensus 92 ~fi~----rp~~~-~~~~~~~~~~--p~~~f~ftvmSYNILAQ~l~~~~~r~~~~-~s~~~L~W~~R~~~Ll~EL~~~dp 163 (495)
T KOG2338|consen 92 SFIQ----RPMLE-SPLEWSNADE--PCSGFDFTVMSYNILAQDLLRDIRRLYFP-ESGPALKWLRRSQNLLNELKHYDP 163 (495)
T ss_pred hhhh----ccccC-CcccccccCC--CCCccceEEEEehHhHHHHHHHhHHhhcc-CChhhcchhHHhHHHHHHHhhcCC
Confidence 1222 22111 1267877765 23236999999999999886656777787 999999999999999999999999
Q ss_pred cEEEEeeecchh---hHHHHHHhCCceEEEecCCCCCceeEEEEEccCcceeEEeeeeeccCCC----CCCceeEEEEEE
Q 047201 238 DIMCFQEVDRFQ---DLEVELKFRGYTGIWKMRTGNAIDGCAIFWRASRFKLLYEEGIEFNKLG----LRDNVAQICVLE 310 (772)
Q Consensus 238 DIICLQEVD~f~---dL~~~L~~~GY~gvf~~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lg----lrdnVaqi~vLe 310 (772)
||||||||+..+ .+.+.|..+||.++|+.+++.+.+||||+|+.++|+++....+.|.+.+ .++||++++.|+
T Consensus 164 DIlCLQEVq~d~~~~~~~~~~~~lGy~~~~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~ 243 (495)
T KOG2338|consen 164 DVLCLQEVQEDHYPEFWQPLLGKLGYTGFFKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLE 243 (495)
T ss_pred CeeeehhhhhhhhHHHHHHHHhhcCceEEEEeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEE
Confidence 999999999843 3577788899999999888889999999999999999999888876532 368999888887
Q ss_pred EecccccccccCCCCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHhhccC-CCCCEEEEcCCCCCCCcHHHH
Q 047201 311 LLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTW-NDAPVVLCGDFNCTPKSPLYN 389 (772)
Q Consensus 311 ~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~-~~vPVILcGDFNStPdS~vYr 389 (772)
... .+. .++.++|+||||.|+|.+.++|++|+.+|++.++++++.. ...|+|+|||||+.|++++|.
T Consensus 244 f~~-----------~~~-~sq~ilVanTHLl~np~~~~vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~~~y~ 311 (495)
T KOG2338|consen 244 FRL-----------VDE-SSQGILVANTHLLFNPSRSDVRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDSPPYL 311 (495)
T ss_pred ecc-----------cCc-ccCceEEEeeeeeecCcccchhhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCCCcch
Confidence 621 011 3568999999999999999999999999999999998754 368999999999999999999
Q ss_pred HHHhCCCCCCCCccccccCCccccccCCCCCCCCcccCCCCCCCCCCccccCCCCCCCCCCCCCCccccccccCCCCCcc
Q 047201 390 FILEQKLDLSGVDRDKVSGQASAEIREPPPPHSRVQSDGSTQGPPEAGISVSDPPSDNLEHDKDGNAEILNSTNSSSRSQ 469 (772)
Q Consensus 390 ~Ls~~~Ldls~~Dr~kvSGq~~s~f~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (772)
+|+++.+.+.+.+++ +.++..
T Consensus 312 fl~~~~l~~~~~~~~-~~e~s~---------------------------------------------------------- 332 (495)
T KOG2338|consen 312 FLTSGPLIYDGRAAH-TIEDSH---------------------------------------------------------- 332 (495)
T ss_pred hhhcCCceecccccc-cccccc----------------------------------------------------------
Confidence 999998876543222 000000
Q ss_pred cccccccccccccccccccccCCCCchhhccccccccccccchhccCCCCCCCCCCCCCCCCccccccCcCCCCCCCCCC
Q 047201 470 CTDTVLGVSDKASSHMHCANKDSATSDEVTKESRQTMIDDSEVAVSGNGDKASNEHSDSNENTESVNHSTASLGNDCPSS 549 (772)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (772)
|...+.
T Consensus 333 -----------------~~~~~~--------------------------------------------------------- 338 (495)
T KOG2338|consen 333 -----------------RYVFSE--------------------------------------------------------- 338 (495)
T ss_pred -----------------cccccc---------------------------------------------------------
Confidence 000000
Q ss_pred cccccCCCCccccccccccccccchhhhcccccccCCCCcccccccchhcccchhhhhhcccCCCccccccccccccCCC
Q 047201 550 VYQKKGSSSTLHQVEASSTATSIDFVLADKLENLSLGNLDETKAESESIREDGNAFLFALHSTEDSSQSNFDHYAQSNLD 629 (772)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (772)
-++.|.. . .++
T Consensus 339 ---------------------------------~~~ge~g-------------~-------------d~~---------- 349 (495)
T KOG2338|consen 339 ---------------------------------SRLGEEG-------------E-------------DDE---------- 349 (495)
T ss_pred ---------------------------------cccCccc-------------c-------------cch----------
Confidence 0000000 0 000
Q ss_pred CCccccccccccCCCccccccccccccccCCCCCCCHHHHhhhcCCC----cccccccc-ceeeec-ccccccccCCcCC
Q 047201 630 PNSEELGDELIDDLSPALDSEAVNAEETTYNPSLWTPMEIATATGNA----DCTYLEHP-LQLRST-YAEVEDCTGTRDS 703 (772)
Q Consensus 630 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~y~~~~wt~~ei~~atg~~----~~~~~~H~-l~L~Sa-Y~~~~~~~~~~d~ 703 (772)
+.+++.+..+..|++..||++||.+|||.. +.+..+|. |++... |....+..-+++.
T Consensus 350 -----------------~~~~~~s~~k~~~~~~s~~~~e~~t~~g~~~~~~~~~~~~h~~~~~~~s~~s~g~~~~~~~~~ 412 (495)
T KOG2338|consen 350 -----------------EESAAFSRGKGQLSQASIPKPEIFTATGDKNHLVELTYSEHESLKVNVSLYSHGYGLVHTENA 412 (495)
T ss_pred -----------------hhhhhhccCccccccccCCCccccccccccchhHHHHHHHhhhhhcccceeeccccccchhhc
Confidence 113333445567888999999999999998 66667776 444333 3444555555664
Q ss_pred ---CCCCceecccCCCCcceeEEEec-C-------------CceeeeccCCCCcccccCCCCCCCCCCCCchhhhheeEe
Q 047201 704 ---HGEPLVTSYNRRFKGTVDYILRS-E-------------GLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVA 766 (772)
Q Consensus 704 ---~gep~~Tnyt~~F~gtiDYI~ys-~-------------~L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~ 766 (772)
.|||.+|||...|+|++|||||+ . .+.+.++|..|..+.|.+..+.|+..|+||||||||+|+
T Consensus 413 ~~~~gep~vt~~~~~~~g~~dyif~~~~~~~~~~~~~~~~~~ikl~~~l~ip~~~e~~k~~~p~~~~~~SDH~aL~~~~~ 492 (495)
T KOG2338|consen 413 WLDRGEPGVTNYALTWKGTLDYIFYSPGDCKQSNREFEEDEAIKLKGLLRIPSPQEMWKAGQPPNGRYGSDHIALVAQFS 492 (495)
T ss_pred cccCCCcceecHHhhhccceeeEEeccCcccccchhhhcccceeEEEEecCCCHHHhhccCCCCCCCCcccceEeeEeeE
Confidence 89999999999999999999999 4 688889999999999999999999999999999999999
Q ss_pred ee
Q 047201 767 FV 768 (772)
Q Consensus 767 ~~ 768 (772)
+.
T Consensus 493 ~~ 494 (495)
T KOG2338|consen 493 LV 494 (495)
T ss_pred ee
Confidence 74
No 3
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=100.00 E-value=1.3e-42 Score=369.57 Aligned_cols=190 Identities=33% Similarity=0.591 Sum_probs=150.0
Q ss_pred ceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecc--hhh-HHHHHHhCCceEEEe
Q 047201 189 RFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR--FQD-LEVELKFRGYTGIWK 265 (772)
Q Consensus 189 ~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~--f~d-L~~~L~~~GY~gvf~ 265 (772)
+|+|||||+|++.|+ ++++|+|. .++++|.+|+++|++||..|+|||||||||+. |++ .++.|...||.++|.
T Consensus 30 ~ftimTYN~Laq~y~---~r~~y~~s-~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~ 105 (378)
T COG5239 30 DFTIMTYNVLAQTYA---TRKMYPYS-GWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFI 105 (378)
T ss_pred eeEEEehhhhhhhhc---cccccCCc-hhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEe
Confidence 799999999999997 48999998 88999999999999999999999999999997 565 588899999999997
Q ss_pred cCCC----------CCceeEEEEEcc----CcceeEEeeeeec-------cC----------CCCCCceeEEEEEEEecc
Q 047201 266 MRTG----------NAIDGCAIFWRA----SRFKLLYEEGIEF-------NK----------LGLRDNVAQICVLELLSQ 314 (772)
Q Consensus 266 ~Rtg----------~~~dG~AIFyRr----SRF~LL~~e~I~f-------s~----------lglrdnVaqi~vLe~Lr~ 314 (772)
.+.+ ...+||||||++ +|+-++-...+.| .+ .+-.++++.+|++..+.
T Consensus 106 ~k~~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~~l~- 184 (378)
T COG5239 106 PKERKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFVGLF- 184 (378)
T ss_pred cCCCcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhcchhheeeeec-
Confidence 6543 267899999999 6644443222111 11 12234555455555442
Q ss_pred cccccccCCCCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHhhccC-------------CCCCEEEEcCCCC
Q 047201 315 NFTENSAALPTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTW-------------NDAPVVLCGDFNC 381 (772)
Q Consensus 315 ~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~-------------~~vPVILcGDFNS 381 (772)
.+.++..++|+|||+.|.|+..++++-|+.++++.++++.++. +.+++++|||||+
T Consensus 185 -----------n~e~gd~~~va~Th~~w~~~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns 253 (378)
T COG5239 185 -----------NKEPGDTPYVANTHLPWDPKYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNS 253 (378)
T ss_pred -----------cCCCCCceeEEeccccccCCCCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccc
Confidence 1246789999999999999999999999999999998776432 2357899999999
Q ss_pred CCCcHHHHHHHhC
Q 047201 382 TPKSPLYNFILEQ 394 (772)
Q Consensus 382 tPdS~vYr~Ls~~ 394 (772)
...|.+|++|.++
T Consensus 254 ~~~s~vy~~l~~~ 266 (378)
T COG5239 254 LRASLVYKFLVTS 266 (378)
T ss_pred eecceehhhhhhH
Confidence 9999999988653
No 4
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=100.00 E-value=2.5e-41 Score=366.52 Aligned_cols=206 Identities=40% Similarity=0.679 Sum_probs=158.9
Q ss_pred CcccccccCCCCCCCCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchhh-H
Q 047201 173 YRNWEHSKASLPPYSERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQD-L 251 (772)
Q Consensus 173 ~R~W~~~~~~~~~~~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~d-L 251 (772)
+|+|+..+.........++||||||+++.++. .+.|.+||.+++.|.+|+..|+++|..++|||||||||++|++ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~v~s~n~l~~~~~~---~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icLqev~~~~~~~ 79 (361)
T KOG0620|consen 3 WRDLISVSGKDVPQGETFTVLSYNILSQLYAT---SKLYMYCPSWALSWEYRRQLLLEEILNYNADILCLQEVDRYHDFF 79 (361)
T ss_pred hhheeeccCCCccCCceEEeechhhhhhhhcc---cCCCcccchhhccHHHHHHHHHHHHhCCCcceeecchhhHHHHHc
Confidence 45666665544455569999999999998875 4778899999999999999999999999999999999988766 5
Q ss_pred HHHHHhCCceEEEecCC------CCCceeEEEEEccCcceeEEeeeeeccCCCC---------------CCceeE-EEEE
Q 047201 252 EVELKFRGYTGIWKMRT------GNAIDGCAIFWRASRFKLLYEEGIEFNKLGL---------------RDNVAQ-ICVL 309 (772)
Q Consensus 252 ~~~L~~~GY~gvf~~Rt------g~~~dG~AIFyRrSRF~LL~~e~I~fs~lgl---------------rdnVaq-i~vL 309 (772)
.+.|...||.+.|..|+ .+..+|||||||+++|+++....+.|+.... .++.+. +..+
T Consensus 80 ~p~l~~~gY~g~~~~k~~~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~~~~~~~~~~~~d~~~~~l~~L 159 (361)
T KOG0620|consen 80 SPELEASGYSGIFIEKTRMGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPPNIAQLNRLTTLDNSGNKLVSL 159 (361)
T ss_pred cchhhhcCCcceeecccccchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcchhHHHHHhhhccccccchhhhh
Confidence 78888789999998764 5568999999999999999988888876431 122222 1111
Q ss_pred EEecccccccccCCCCccCCCCeEE----EEEEecCCCCCChHhHHHHHHHHHHHHH----Hhhc---------cCCCCC
Q 047201 310 ELLSQNFTENSAALPTSSAHSKKVA----ICNIHVLFNPKRGEIKLGQVRTLLEKAH----AVSK---------TWNDAP 372 (772)
Q Consensus 310 e~Lr~~~~~~~~~Lp~~~t~gk~Lv----VaNTHL~~nPk~~dIRL~Qa~iLL~~L~----aLsk---------~~~~vP 372 (772)
+. ..+..+. ++|+|+.|.+...++|+.|+..++..+. ++.+ ....+|
T Consensus 160 ~~----------------~~~~~~~~~~~~~n~h~~~~~~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p 223 (361)
T KOG0620|consen 160 KA----------------ELGNMVSLPHLLLNTHILWDLPYEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRIASFP 223 (361)
T ss_pred hh----------------hcCCceeeccccccceeccCCCccchHHHHHHHHhhcccccchhhhhhhccccccccccccc
Confidence 11 1111222 4899999999999999999998887742 2211 123589
Q ss_pred EEEEcCCCCCCCcHHHHHHHhCCCC
Q 047201 373 VVLCGDFNCTPKSPLYNFILEQKLD 397 (772)
Q Consensus 373 VILcGDFNStPdS~vYr~Ls~~~Ld 397 (772)
+++|||||++|.+++|.++..+.+.
T Consensus 224 ~l~~gdfNs~p~~~v~~~~~~~~~~ 248 (361)
T KOG0620|consen 224 LLLCGDFNSTPLSPVYALLASGILS 248 (361)
T ss_pred eeeeccccCCCCccceeecccCCCC
Confidence 9999999999999999988766543
No 5
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.80 E-value=1.1e-18 Score=184.40 Aligned_cols=173 Identities=20% Similarity=0.156 Sum_probs=120.1
Q ss_pred eEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecch---hhHHHHHH-hCCceEEEe
Q 047201 190 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRF---QDLEVELK-FRGYTGIWK 265 (772)
Q Consensus 190 fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f---~dL~~~L~-~~GY~gvf~ 265 (772)
||||||||....+ .++ ....|+.|.++|++.+...++||||||||... ..|...|+ .++|...+.
T Consensus 1 lkVmtyNv~~l~~------~~~-----~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~ 69 (283)
T TIGR03395 1 IKILSHNVYMLST------NLY-----PNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVI 69 (283)
T ss_pred CeEEEEEeeeecc------ccc-----CCccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHhhCCceEeec
Confidence 6899999986322 111 23468999999999999999999999999763 23666663 566654332
Q ss_pred cCC--------------CCCceeEEEEEccCcceeEEeeeeeccCCCCCC---ceeEEEEEEEecccccccccCCCCccC
Q 047201 266 MRT--------------GNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRD---NVAQICVLELLSQNFTENSAALPTSSA 328 (772)
Q Consensus 266 ~Rt--------------g~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrd---nVaqi~vLe~Lr~~~~~~~~~Lp~~~t 328 (772)
.+. .....|++|+ |||+++......|...+..+ +.+ ++.++.. .
T Consensus 70 g~~~~g~~~~~g~~~~~~~~~~G~~iL---Sr~Pi~~~~~~~f~~~~~~d~~~~kg-~l~a~i~---------------~ 130 (283)
T TIGR03395 70 GRSKKGWDKTLGNYSSSALEDGGVAIV---SKWPIEEKIQYIFNKGCGADNLSNKG-FAYVKIN---------------K 130 (283)
T ss_pred ccccccchhccccccccCccCCEEEEE---ECCCccccEEEEccCCCCCccccCCc-eEEEEEe---------------c
Confidence 211 1235699999 99999988777775322111 111 1222221 2
Q ss_pred CCCeEEEEEEecCCCCC------ChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHHHHHHHh
Q 047201 329 HSKKVAICNIHVLFNPK------RGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPLYNFILE 393 (772)
Q Consensus 329 ~gk~LvVaNTHL~~nPk------~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~vYr~Ls~ 393 (772)
+++.|.|+||||.+... ...+|..|++.|.+.+.+.. ...+.|||||||||..|++..|+.|..
T Consensus 131 ~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~-~~~~~pvIl~GDfN~~~~s~~~~~ml~ 200 (283)
T TIGR03395 131 NGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKN-IPKDETVLIGGDLNVNKGSNEYHDMFK 200 (283)
T ss_pred CCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhcc-CCCCceEEEEeeCCCCCCCHHHHHHHH
Confidence 46789999999997421 25679999999998886422 123578999999999999999998854
No 6
>PRK11756 exonuclease III; Provisional
Probab=99.71 E-value=2.2e-16 Score=163.46 Aligned_cols=152 Identities=16% Similarity=0.187 Sum_probs=98.7
Q ss_pred eEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchhh-H-HHHHHhCCceEEEecC
Q 047201 190 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQD-L-EVELKFRGYTGIWKMR 267 (772)
Q Consensus 190 fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~d-L-~~~L~~~GY~gvf~~R 267 (772)
||||||||... ..|.+.|++.|...+||||||||+....+ + ...+...||..+|..+
T Consensus 1 mri~T~Nv~g~---------------------~~~~~~i~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~gy~~~~~~~ 59 (268)
T PRK11756 1 MKFVSFNINGL---------------------RARPHQLEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYHGQ 59 (268)
T ss_pred CEEEEEEcCCH---------------------HHHHHHHHHHHHhcCCCEEEEEecccccccCCHHHHHhcCCEEEEeCC
Confidence 69999999741 23556789999999999999999964221 1 2234567998877543
Q ss_pred CCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCC-
Q 047201 268 TGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKR- 346 (772)
Q Consensus 268 tg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~- 346 (772)
.+..|+||+ +|++++.... .+.... .+..++++..+.. ..+..|.|+|+|+......
T Consensus 60 --~~~~Gvail---Sr~p~~~~~~-~~~~~~-~~~~~r~l~~~i~---------------~~~g~~~v~n~y~P~~~~~~ 117 (268)
T PRK11756 60 --KGHYGVALL---SKQTPIAVRK-GFPTDD-EEAQRRIIMATIP---------------TPNGNLTVINGYFPQGESRD 117 (268)
T ss_pred --CCCCEEEEE---ECCChHHeEE-CCCCcc-ccccCCEEEEEEE---------------cCCCCEEEEEEEecCCCCCC
Confidence 356899999 7777764432 222111 0111233333321 1223499999999653221
Q ss_pred ----hHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcH
Q 047201 347 ----GEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSP 386 (772)
Q Consensus 347 ----~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~ 386 (772)
...|..|+..|.+.+.++.+ .+.|||||||||..|++.
T Consensus 118 ~~~~~~~r~~~~~~l~~~l~~~~~--~~~pvIl~GDfN~~~~~~ 159 (268)
T PRK11756 118 HPTKFPAKRQFYQDLQNYLETELS--PDNPLLIMGDMNISPTDL 159 (268)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhc--cCCCEEEEeecccCCChh
Confidence 13577888888888877532 467999999999998754
No 7
>PRK05421 hypothetical protein; Provisional
Probab=99.70 E-value=2.3e-16 Score=164.45 Aligned_cols=161 Identities=19% Similarity=0.221 Sum_probs=99.1
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchhhHHHHHHhCCceEEEe--
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQDLEVELKFRGYTGIWK-- 265 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~dL~~~L~~~GY~gvf~-- 265 (772)
+.||||||||+..... +| ..+++.| ..+|||||||||+.-..+.+.+...|+...|.
T Consensus 42 ~~lri~t~NI~~~~~~----------------~~----~~~l~~l-~~~~DiI~LQEv~~~~~~~~~~~~~~~~~~~~~~ 100 (263)
T PRK05421 42 ERLRLLVWNIYKQQRA----------------GW----LSVLKNL-GKDADLVLLQEAQTTPELVQFATANYLAADQAPA 100 (263)
T ss_pred CceeEEEEEccccccc----------------cH----HHHHHHh-ccCCCEEEEEecccCcchHHHhhcccchHHhccc
Confidence 6899999999974321 12 2344455 89999999999986333333333344443332
Q ss_pred cCCCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCC
Q 047201 266 MRTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPK 345 (772)
Q Consensus 266 ~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk 345 (772)
.....+..|+||+ |||+++....+......++ ..+.+++..+. ..+++.|.|+||||.....
T Consensus 101 ~~~~~~~~GvaiL---SR~pi~~~~~~~~~~~~~~--~~r~~l~a~~~-------------~~~g~~l~v~ntHl~~~~~ 162 (263)
T PRK05421 101 FVLPQHPSGVMTL---SKAHPVYCCPLREREPWLR--LPKSALITEYP-------------LPNGRTLLVVNIHAINFSL 162 (263)
T ss_pred cccCCCccceeEe---eecccceeeccCCCCcccc--CcceeEEEEEE-------------eCCCCEEEEEEECccccCc
Confidence 1123357899999 9999987654422221111 11222222221 1245689999999975322
Q ss_pred ChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCc--HHHHHHH
Q 047201 346 RGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKS--PLYNFIL 392 (772)
Q Consensus 346 ~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS--~vYr~Ls 392 (772)
....|..|++.|.+.+.+. ..|+|||||||+.+.. ..++.+.
T Consensus 163 ~~~~r~~q~~~l~~~~~~~-----~~p~Il~GDFN~~~~~~~~~l~~~~ 206 (263)
T PRK05421 163 GVDVYSKQLEPIGDQIAHH-----SGPVILAGDFNTWSRKRMNALKRFA 206 (263)
T ss_pred ChHHHHHHHHHHHHHHHhC-----CCCEEEEcccccCcccchHHHHHHH
Confidence 3566889998888777543 3699999999987643 2444443
No 8
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.67 E-value=1.6e-15 Score=160.64 Aligned_cols=170 Identities=16% Similarity=0.194 Sum_probs=113.6
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecc--hhhHHHHH---Hh---CC
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR--FQDLEVEL---KF---RG 259 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~--f~dL~~~L---~~---~G 259 (772)
..||||||||.. +.+ ....|..|++.|++.|+ ++|||+||||.. ..++...| .+ .+
T Consensus 16 ~~l~I~SfNIr~--fgd------------~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~ 79 (276)
T smart00476 16 ASLRICAFNIQS--FGD------------SKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNT 79 (276)
T ss_pred CcEEEEEEECcc--cCC------------ccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCC
Confidence 579999999984 221 13569999999999998 789999999975 33444443 22 25
Q ss_pred ceEEEecCCC--CCceeEEEEEccCcceeEEeeeeeccCC--CCCCceeEEEEEEEecccccccccCCCCccCCCCeEEE
Q 047201 260 YTGIWKMRTG--NAIDGCAIFWRASRFKLLYEEGIEFNKL--GLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAI 335 (772)
Q Consensus 260 Y~gvf~~Rtg--~~~dG~AIFyRrSRF~LL~~e~I~fs~l--glrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvV 335 (772)
|..+-..+.| ...+..|+|||++|+++++... |++. ++.+...|.+.+..++. ..+.++.|++
T Consensus 80 Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~--f~d~~~~~~~~F~ReP~~~~F~~-----------~~~~~~~F~l 146 (276)
T smart00476 80 YSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYL--YDDGCECGNDVFSREPFVVKFSS-----------PSTAVKEFVI 146 (276)
T ss_pred ceEEecCCCCCCCCCEEEEEEEecceEEEcccce--ecCCCCCccccccccceEEEEEe-----------CCCCCccEEE
Confidence 7666544432 2468899999999999998754 4431 24444566666665531 1123568999
Q ss_pred EEEecCCCCCChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCC---cHHHHHH
Q 047201 336 CNIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPK---SPLYNFI 391 (772)
Q Consensus 336 aNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPd---S~vYr~L 391 (772)
+|+|+.+. .+.+++..|.+.+....+.|+..||||+||||+.+. ...++-|
T Consensus 147 i~~H~~p~-----~~~~e~~aL~~v~~~~~~~~~~~~villGDFNa~~~y~~~~~~~~i 200 (276)
T smart00476 147 VPLHTTPE-----AAVAEIDALYDVYLDVRQKWGTEDVIFMGDFNAGCSYVTKKQWSSI 200 (276)
T ss_pred EEecCChH-----HHHHHHHHHHHHHHHHHHhhccCCEEEEccCCCCCCccChhhhhhh
Confidence 99999762 244455555554434334466789999999999763 4455544
No 9
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.64 E-value=9.6e-16 Score=160.49 Aligned_cols=168 Identities=30% Similarity=0.393 Sum_probs=115.0
Q ss_pred ceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecc-h-------hhHHHHH-HhCC
Q 047201 189 RFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR-F-------QDLEVEL-KFRG 259 (772)
Q Consensus 189 ~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~-f-------~dL~~~L-~~~G 259 (772)
.++|+||||....- ..++..+.+.|.+.|....+||||||||+. + .++...+ ...+
T Consensus 9 ~~~v~TyNih~~~~---------------~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~ 73 (259)
T COG3568 9 RFKVLTYNIHKGFG---------------AFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGL 73 (259)
T ss_pred eeEEEEEEEEEccC---------------ccCceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcC
Confidence 48999999996431 125566778899999999999999999995 1 2222222 2223
Q ss_pred ceEEEe--c---CCCCCceeEEEEEccCcceeEEeeeeeccCC-CCCCceeEEEEEEEecccccccccCCCCccCCCCeE
Q 047201 260 YTGIWK--M---RTGNAIDGCAIFWRASRFKLLYEEGIEFNKL-GLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKV 333 (772)
Q Consensus 260 Y~gvf~--~---Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~l-glrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~L 333 (772)
....|. . ..+...+|++|+ ||+++.+...+.++.. ++.. +.+++..+. ...+++|
T Consensus 74 ~~~~~~~~~~~a~~~~~~~GnaiL---S~~pi~~v~~~~lp~~~~~~~---Rgal~a~~~-------------~~~g~~l 134 (259)
T COG3568 74 APYWWSGAAFGAVYGEGQHGNAIL---SRLPIRDVENLALPDPTGLEP---RGALLAEIE-------------LPGGKPL 134 (259)
T ss_pred CccccchhhhhhhcccceeeeEEE---ecCcccchhhccCCCCCCCCC---ceeEEEEEE-------------cCCCCEE
Confidence 222221 1 124567899999 7999998888877764 3322 333333331 1257799
Q ss_pred EEEEEecCCCCCChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHHHHHHHhCCCC
Q 047201 334 AICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPLYNFILEQKLD 397 (772)
Q Consensus 334 vVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~vYr~Ls~~~Ld 397 (772)
.|+|+||.+ +..-|++|+..|++.+. +.+ ..|+|+|||||+.|.|+.|+.+....++
T Consensus 135 ~V~~~HL~l---~~~~R~~Q~~~L~~~~~-l~~---~~p~vl~GDFN~~p~s~~yr~~~~~~~~ 191 (259)
T COG3568 135 RVINAHLGL---SEESRLRQAAALLALAG-LPA---LNPTVLMGDFNNEPGSAEYRLAARSPLN 191 (259)
T ss_pred EEEEEeccc---cHHHHHHHHHHHHhhcc-Ccc---cCceEEEccCCCCCCCccceeccCCchh
Confidence 999999997 67789999998888322 222 2399999999999999999776655444
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.64 E-value=1.1e-14 Score=140.86 Aligned_cols=149 Identities=26% Similarity=0.346 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhhcCCCcEEEEeeecc--hhh-HHHHHHhC-CceEEEecCCCC----CceeEEEEEccCcceeEEeeeee
Q 047201 222 EWRKRSILFELGLWSADIMCFQEVDR--FQD-LEVELKFR-GYTGIWKMRTGN----AIDGCAIFWRASRFKLLYEEGIE 293 (772)
Q Consensus 222 d~Rk~lIikEI~~~dPDIICLQEVD~--f~d-L~~~L~~~-GY~gvf~~Rtg~----~~dG~AIFyRrSRF~LL~~e~I~ 293 (772)
..+++.|++.|...+|||||||||.. +.+ +...|... ++.......... ...|+||+||...+..+......
T Consensus 15 ~~~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~~~ 94 (249)
T PF03372_consen 15 DRKRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILSRSPIFSSVSYVFSL 94 (249)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEESSCCCEEEEEEEEE
T ss_pred hhHHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhcccccccccceeccccccccccCceEEEEEcccccccccccccc
Confidence 34566699999999999999999985 333 44555543 434444322221 36899999887655544443333
Q ss_pred ccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHhhccCCCCCE
Q 047201 294 FNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTWNDAPV 373 (772)
Q Consensus 294 fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~~~vPV 373 (772)
+...... +.......... ..+ ...++.|+|+|+|+.+ ....|..|...+++.+..+.......|+
T Consensus 95 ~~~~~~~--~~~~~~~~~~~-------~~~---~~~~~~i~v~~~H~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (249)
T PF03372_consen 95 FSKPGIR--IFRRSSKSKGI-------VPV---SINGKPITVVNVHLPS---SNDERQEQWRELLARIQKIYADNPNEPV 159 (249)
T ss_dssp ESSSTTC--EEEEEEEEEEE-------EEE---EEETEEEEEEEEETTS---HHHHHHHHHHHHHHHHHHHHHTSSCCEE
T ss_pred ccccccc--ccccccccccc-------ccc---cccceEEEeeeccccc---cchhhhhhhhhhhhhhhhcccccccceE
Confidence 3332211 11000000000 000 0015789999999876 5556676777888888777654333479
Q ss_pred EEEcCCCCCCCc
Q 047201 374 VLCGDFNCTPKS 385 (772)
Q Consensus 374 ILcGDFNStPdS 385 (772)
|||||||+.+.+
T Consensus 160 iv~GDfN~~~~~ 171 (249)
T PF03372_consen 160 IVMGDFNSRPDS 171 (249)
T ss_dssp EEEEE-SS-BSS
T ss_pred EEEeecccCCcc
Confidence 999999999875
No 11
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.57 E-value=9.4e-14 Score=142.71 Aligned_cols=147 Identities=21% Similarity=0.309 Sum_probs=94.9
Q ss_pred eEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchh-hH-HHHHHhCCceEEEecC
Q 047201 190 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQ-DL-EVELKFRGYTGIWKMR 267 (772)
Q Consensus 190 fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~-dL-~~~L~~~GY~gvf~~R 267 (772)
|||+||||.... .+.+.+++.|...+||||||||+.... .+ ...+...||..+|...
T Consensus 1 mri~t~Ni~g~~---------------------~~~~~~~~~l~~~~~DIi~LQE~~~~~~~~~~~~~~~~g~~~~~~~~ 59 (254)
T TIGR00195 1 MKIISWNVNGLR---------------------ARLHKGLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQ 59 (254)
T ss_pred CEEEEEEcCcHH---------------------HhHHHHHHHHHhcCCCEEEEEecccchhhCCHHHhhcCCcEEEEecC
Confidence 699999997521 123447899999999999999997632 23 3334567998777643
Q ss_pred CCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCC--
Q 047201 268 TGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPK-- 345 (772)
Q Consensus 268 tg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk-- 345 (772)
.+..|+||++|.....+.. .+..... +.-++++.++. ..+.|+|||+.....
T Consensus 60 --~g~~Gvailsr~~~~~~~~--~~~~~~~---~~~~r~i~~~~-------------------~~~~l~~~~~p~~~~~~ 113 (254)
T TIGR00195 60 --KGYSGVAIFSKEEPLSVRR--GFGVEEE---DAEGRIIMAEF-------------------DSFLVINGYFPNGSRDD 113 (254)
T ss_pred --CCcceEEEEEcCCcceEEE--CCCCccc---ccCCCEEEEEE-------------------CCEEEEEEEccCCCCCC
Confidence 4567999997654333321 1111111 12234443332 148999999986321
Q ss_pred --ChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCc
Q 047201 346 --RGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKS 385 (772)
Q Consensus 346 --~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS 385 (772)
....|..+...|.+.+.++.. .+.|||+|||||..|..
T Consensus 114 ~~~~~~r~~~~~~l~~~~~~~~~--~~~pvIi~GDfN~~~~~ 153 (254)
T TIGR00195 114 SEKLPYKLQWLEALQNYLEKLVD--KDKPVLICGDMNIAPTE 153 (254)
T ss_pred CccHHHHHHHHHHHHHHHHHHHh--cCCcEEEEeecccCCCh
Confidence 123477777778777777643 35799999999999875
No 12
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=6.5e-14 Score=142.09 Aligned_cols=147 Identities=21% Similarity=0.278 Sum_probs=91.7
Q ss_pred eEEEeeccccCcccccccccccccCCccccchHHHHHHH-HHHhhcCCCcEEEEeeecch-hhHH-HHHHhCCceEEEec
Q 047201 190 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSI-LFELGLWSADIMCFQEVDRF-QDLE-VELKFRGYTGIWKM 266 (772)
Q Consensus 190 fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lI-ikEI~~~dPDIICLQEVD~f-~dL~-~~L~~~GY~gvf~~ 266 (772)
|||+||||.... .|.+.+ ++.|...+||||||||++.. ..+. ..+...||..+|..
T Consensus 1 lri~t~Nv~g~~---------------------~~~~~~~~~~l~~~~~DIv~LQE~~~~~~~~~~~~~~~~g~~~~~~~ 59 (255)
T TIGR00633 1 MKIISWNVNGLR---------------------ARLHKLFLDWLKEEQPDVLCLQETKVADEQFPAELFEELGYHVFFHG 59 (255)
T ss_pred CEEEEEecccHH---------------------HHhhccHHHHHHhcCCCEEEEEeccCchhhCCHhHhccCCceEEEee
Confidence 699999998532 122344 88899999999999999863 2222 23346799887765
Q ss_pred CCCCCceeEEEEEccCcceeEEeee-eeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCC
Q 047201 267 RTGNAIDGCAIFWRASRFKLLYEEG-IEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPK 345 (772)
Q Consensus 267 Rtg~~~dG~AIFyRrSRF~LL~~e~-I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk 345 (772)
....+..|+||++| +++..... +..... +..++.+.++. +.+.|+++|+.....
T Consensus 60 ~~~~~~~G~ailsr---~~~~~~~~~~~~~~~---~~~~r~l~~~~-------------------~~~~i~~vy~p~~~~ 114 (255)
T TIGR00633 60 AKSKGYSGVAILSK---VEPLDVRYGFGGEEH---DEEGRVITAEF-------------------DGFTVVNVYVPNGGS 114 (255)
T ss_pred cccCCcceEEEEEc---CCcceEEECCCCCcc---cCCCcEEEEEE-------------------CCEEEEEEEccCCCC
Confidence 43335679999954 55543322 111111 12233322221 368999999976432
Q ss_pred Ch----HhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCC
Q 047201 346 RG----EIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPK 384 (772)
Q Consensus 346 ~~----dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPd 384 (772)
.+ ..|..|...+.+.+.+... .+.|+|+|||||+.+.
T Consensus 115 ~~~~~~~~r~~~~~~l~~~~~~~~~--~~~~~Il~GDFN~~~~ 155 (255)
T TIGR00633 115 RGLERLEYKLQFWDALFQYYEKELD--AGKPVIICGDMNVAHT 155 (255)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHh--cCCcEEEEeecccCCC
Confidence 22 3466677666666544322 3579999999999875
No 13
>PTZ00297 pantothenate kinase; Provisional
Probab=99.45 E-value=1.3e-12 Score=162.96 Aligned_cols=176 Identities=21% Similarity=0.229 Sum_probs=109.3
Q ss_pred CCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhc-CCCcEEEEeeecchh--------------hH
Q 047201 187 SERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGL-WSADIMCFQEVDRFQ--------------DL 251 (772)
Q Consensus 187 ~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~-~dPDIICLQEVD~f~--------------dL 251 (772)
...||||||||..-.. ....|. .+.|...|.. .++||||||||.... .+
T Consensus 8 ~~~l~VlTyNv~~~~~--------------~~~~~~--~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~ 71 (1452)
T PTZ00297 8 CAQARVLSYNFNILPR--------------GCGGFQ--HERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKML 71 (1452)
T ss_pred CCceEEEEEEccccCC--------------Cccccc--HHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHH
Confidence 3579999999874210 011122 2445555556 477999999998621 23
Q ss_pred HHHHHhCCceEEEecCCC---C-------CceeEEEEEccCcceeEEeeeeeccCCCCCC---ce-eEEEEEEEeccccc
Q 047201 252 EVELKFRGYTGIWKMRTG---N-------AIDGCAIFWRASRFKLLYEEGIEFNKLGLRD---NV-AQICVLELLSQNFT 317 (772)
Q Consensus 252 ~~~L~~~GY~gvf~~Rtg---~-------~~dG~AIFyRrSRF~LL~~e~I~fs~lglrd---nV-aqi~vLe~Lr~~~~ 317 (772)
.+.|...||..+-..+.. . ...|+||+ |||+|++.+.+.|+.....+ +. ...+.++.
T Consensus 72 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AIL---SR~PI~~~~~~~l~~~~~~~~~~~RG~L~a~I~v------ 142 (1452)
T PTZ00297 72 VDELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIA---SRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEV------ 142 (1452)
T ss_pred HHHHHhcCCceeEeecCccccccccCccccCCEEEEE---ECCChhhceeeecCcccccccccccceEEEEEEc------
Confidence 556667798654322211 1 46799999 99999999999887543211 11 12222221
Q ss_pred ccccCCCCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHH-hhcc------CCCCCEEEEcCCCCC--------
Q 047201 318 ENSAALPTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHA-VSKT------WNDAPVVLCGDFNCT-------- 382 (772)
Q Consensus 318 ~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~a-Lsk~------~~~vPVILcGDFNSt-------- 382 (772)
+....+++.+.|+||||.+... ...|.+|++.+.+.++. +... ..+.|+|||||||..
T Consensus 143 ------p~~~g~~~~v~v~~tHL~~~~~-~~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~~~~~~~~ 215 (1452)
T PTZ00297 143 ------PLAEGGSQRIVFFNVHLRQEDS-LPSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNINGIDPHNGG 215 (1452)
T ss_pred ------cccCCCCceEEEEEeCCCCCCC-cchHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCccccccccC
Confidence 1101123589999999998533 24688999888888765 3211 135699999999955
Q ss_pred CCcHHHHHHHhC
Q 047201 383 PKSPLYNFILEQ 394 (772)
Q Consensus 383 PdS~vYr~Ls~~ 394 (772)
+.+..|+.|...
T Consensus 216 ~~s~e~~~ml~~ 227 (1452)
T PTZ00297 216 HPTKRFQELLNE 227 (1452)
T ss_pred CccHHHHHHHHH
Confidence 245667665543
No 14
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.44 E-value=1.3e-12 Score=137.33 Aligned_cols=149 Identities=24% Similarity=0.305 Sum_probs=96.5
Q ss_pred eEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchh-hH-HHHHHhCCceEEEecC
Q 047201 190 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQ-DL-EVELKFRGYTGIWKMR 267 (772)
Q Consensus 190 fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~-dL-~~~L~~~GY~gvf~~R 267 (772)
|||+||||.+-. .|.+.+++.|...+||||||||+.--+ .+ .+.+...||+.++...
T Consensus 1 mkI~SwNVNgiR---------------------ar~~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~g 59 (261)
T COG0708 1 MKIASWNVNGLR---------------------ARLKKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNHG 59 (261)
T ss_pred CeeEEEehhhHH---------------------HHHHHHHHHHHHhCCCEEEEEecccCcccCCHhHHhhCCceEEEecC
Confidence 689999998743 356668888999999999999997632 23 4455678996655432
Q ss_pred CCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCCh
Q 047201 268 TGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKRG 347 (772)
Q Consensus 268 tg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~ 347 (772)
.++..|+||+ +|.++.+. ..-|......+..++++.++. . .|.|+|..+...-..+
T Consensus 60 -qKgysGVail---sr~~~~~v-~~g~~~~~~~d~e~R~I~a~~-----------------~--~~~v~~~Y~PnG~~~~ 115 (261)
T COG0708 60 -QKGYSGVAIL---SKKPPDDV-RRGFPGEEEDDEEGRVIEAEF-----------------D--GFRVINLYFPNGSSIG 115 (261)
T ss_pred -cCCcceEEEE---EccCchhh-hcCCCCCccccccCcEEEEEE-----------------C--CEEEEEEEcCCCCCCC
Confidence 2678999999 55555511 122222111233466665554 1 2899999876532212
Q ss_pred H----hHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCc
Q 047201 348 E----IKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKS 385 (772)
Q Consensus 348 d----IRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS 385 (772)
. .|+.=...+..+++++.+ .+.|+|+|||||..|..
T Consensus 116 ~~k~~yKl~f~~~l~~~l~~l~~--~~~~~vl~GD~NIap~~ 155 (261)
T COG0708 116 LEKFDYKLRFLDALRNYLEELLK--KGKPVVLCGDFNIAPEE 155 (261)
T ss_pred CcchHHHHHHHHHHHHHHHHHhh--cCCCEEEecccccCCch
Confidence 2 244445556666666654 35899999999999863
No 15
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.37 E-value=9e-12 Score=130.42 Aligned_cols=183 Identities=21% Similarity=0.257 Sum_probs=126.4
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecc--hhhHHHHHHhCCceEEEe
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR--FQDLEVELKFRGYTGIWK 265 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~--f~dL~~~L~~~GY~gvf~ 265 (772)
..|.+|+|||....+ -+...|.+.|...|+.++|||||||||-. |.-+.+ ++ .-|..++.
T Consensus 98 ~~~S~~~WnidgLdl----------------n~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~~~~K-~~-s~y~i~~~ 159 (349)
T KOG2756|consen 98 SMFSLITWNIDGLDL----------------NNLSERMRAVCHYLALYSPDVIFLQEVIPPYYSYLKK-RS-SNYEIITG 159 (349)
T ss_pred cEEEEEEeecccccc----------------chHHHHHHHHHHHHHhcCCCEEEEeecCchhhHHHHH-hh-hheeEEEe
Confidence 468999999986432 12357999999999999999999999975 333443 22 23444443
Q ss_pred cCCCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCC
Q 047201 266 MRTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPK 345 (772)
Q Consensus 266 ~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk 345 (772)
.+ ....|-+|+ ..+||.+...+.|.|...++..+ .+| ++. ..+|.+++++|+||.+.-.
T Consensus 160 ~~--~~~~~~~~l-~~s~~~Vks~~~i~F~NS~M~R~-L~I--~Ev---------------~v~G~Kl~l~tsHLEStr~ 218 (349)
T KOG2756|consen 160 HE--EGYFTAIML-KKSRVKVKSQEIIPFPNSKMMRN-LLI--VEV---------------NVSGNKLCLMTSHLESTRG 218 (349)
T ss_pred cc--ceeeeeeee-ehhhcCccccceeccCcchhhhe-eEE--EEE---------------eecCceEEEEeccccCCCC
Confidence 32 234555554 66999999999999977654333 233 332 1356789999999998544
Q ss_pred ChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHHHHHHHhCCCCCCCCccccccC-Cccccc
Q 047201 346 RGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPLYNFILEQKLDLSGVDRDKVSG-QASAEI 414 (772)
Q Consensus 346 ~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~vYr~Ls~~~Ldls~~Dr~kvSG-q~~s~f 414 (772)
....|..|....+++++++....++.-||+.||+|..-. .+ ..=.+...-.|.|++-| .-++.|
T Consensus 219 h~P~r~~qF~~~~~k~~EaIe~lPnA~ViFGGD~NlrD~-ev----~r~~lPD~~vDvWE~lg~p~~~~F 283 (349)
T KOG2756|consen 219 HAPERMNQFKMVLKKMQEAIESLPNATVIFGGDTNLRDR-EV----TRCGLPDNIVDVWEFLGKPKHCQF 283 (349)
T ss_pred CChHHHHHHHHHHHHHHHHHHhCCCceEEEcCcccchhh-hc----ccCCCCchHHHHHHHhCCCCcCce
Confidence 445688899988888887766668899999999996432 11 22246666778888887 444555
No 16
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.37 E-value=8.8e-13 Score=142.23 Aligned_cols=185 Identities=22% Similarity=0.226 Sum_probs=129.7
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchhhH---HHHHH-hCCceEE
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQDL---EVELK-FRGYTGI 263 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~dL---~~~L~-~~GY~gv 263 (772)
-.+||+|.|+++..+.+. +-..|.+.|.+++...+.||+.||||...+|+ ...+. .+.|.-.
T Consensus 7 ~~lriltlN~Wgip~~Sk--------------~R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~ 72 (422)
T KOG3873|consen 7 LELRILTLNIWGIPYVSK--------------DRRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHY 72 (422)
T ss_pred heeeeeEeeccccccccc--------------hhHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHh
Confidence 479999999999766542 22468889999999999999999999886554 33332 3666666
Q ss_pred EecCCCCCceeEEEEEccCcceeEEeeeeeccCCCC-----CCc--eeEEEEEEEecccccccccCCCCccCCCCeEEEE
Q 047201 264 WKMRTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGL-----RDN--VAQICVLELLSQNFTENSAALPTSSAHSKKVAIC 336 (772)
Q Consensus 264 f~~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lgl-----rdn--Vaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVa 336 (772)
|+ .|-.+.|+|+| ||++|++.-...|+-.|. |.. ++..+.+..+ ..+++.+-+.
T Consensus 73 FH--SGimGaGL~vf---SK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l--------------~~~g~~v~~y 133 (422)
T KOG3873|consen 73 FH--SGIMGAGLCVF---SKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVL--------------LVGGRMVNLY 133 (422)
T ss_pred hh--cccccCceEEe---ecCchhhhhhhccccCCccceeeeccccccceeEEEEE--------------eeCCEEeeee
Confidence 65 35557899999 999999866555443221 111 1111122222 1256899999
Q ss_pred EEecCCCCC-ChHh----HHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHHHHHHHhCCCCCCCCccccccCCcc
Q 047201 337 NIHVLFNPK-RGEI----KLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPLYNFILEQKLDLSGVDRDKVSGQAS 411 (772)
Q Consensus 337 NTHL~~nPk-~~dI----RL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~vYr~Ls~~~Ldls~~Dr~kvSGq~~ 411 (772)
||||.+.-+ .+|+ |+.|+=.+.+.++...+ +..-||+|||||+.|.+-.+++|+..++ .|+|...-.+.
T Consensus 134 ntHLHAeY~rq~D~YL~HR~~QAwdlaqfi~~t~q--~~~vVI~~GDLN~~P~dl~~~ll~~a~l----~daw~~~h~~q 207 (422)
T KOG3873|consen 134 NTHLHAEYDRQNDEYLCHRVAQAWDLAQFIRATRQ--NADVVILAGDLNMQPQDLGHKLLLSAGL----VDAWTSLHLDQ 207 (422)
T ss_pred ehhccccccccCchhhhHHHHHHHHHHHHHHHHhc--CCcEEEEecCCCCCccccceeeeeccch----hhhHhhhchhh
Confidence 999997432 3343 99999999888887765 4566999999999999999999985433 36666554443
No 17
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.30 E-value=3.5e-11 Score=125.77 Aligned_cols=144 Identities=17% Similarity=0.309 Sum_probs=87.7
Q ss_pred eEEEeeccccCcccccccccccccCCccccchHHHH-HHHHHHhhcCCCcEEEEeeecch-hhHHHHHHhCCceEEEecC
Q 047201 190 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRK-RSILFELGLWSADIMCFQEVDRF-QDLEVELKFRGYTGIWKMR 267 (772)
Q Consensus 190 fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk-~lIikEI~~~dPDIICLQEVD~f-~dL~~~L~~~GY~gvf~~R 267 (772)
|||+||||.+-.. |. +.+.+.|...+||||||||+.-- .++. +...||..++...
T Consensus 1 mki~swNVNgir~---------------------~~~~~~~~~l~~~~~DIiclQEtK~~~~~~~--~~~~gY~~~~~~~ 57 (250)
T PRK13911 1 MKLISWNVNGLRA---------------------CMTKGFMDFFNSVDADVFCIQESKMQQEQNT--FEFKGYFDFWNCA 57 (250)
T ss_pred CEEEEEEeCChhH---------------------hhhhhHHHHHHhcCCCEEEEEeecccccccc--cccCCceEEEEec
Confidence 6999999987431 22 24677899999999999999752 2221 3346998777532
Q ss_pred CCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCCh
Q 047201 268 TGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKRG 347 (772)
Q Consensus 268 tg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~ 347 (772)
..++..|+||+.|.....+. ..+.... .+.-++++.++. ..|+|+|+.+...- .+
T Consensus 58 ~~kgy~GVAi~~k~~~~~v~----~~~~~~~-~d~eGR~I~~~~-------------------~~~~l~nvY~Pn~~-~~ 112 (250)
T PRK13911 58 IKKGYSGVVTFTKKEPLSVS----YGINIEE-HDKEGRVITCEF-------------------ESFYLVNVYTPNSQ-QA 112 (250)
T ss_pred ccCccceEEEEEcCCchheE----EcCCCCc-ccccCCEEEEEE-------------------CCEEEEEEEecCCC-CC
Confidence 34567899999775422221 1121111 123356554443 25999999987532 22
Q ss_pred HhHHHH----HHHHHHHHHHhhccCCCCCEEEEcCCCCCCC
Q 047201 348 EIKLGQ----VRTLLEKAHAVSKTWNDAPVVLCGDFNCTPK 384 (772)
Q Consensus 348 dIRL~Q----a~iLL~~L~aLsk~~~~vPVILcGDFNStPd 384 (772)
..|+.+ ...+.++++++. .+.++|+|||||..+.
T Consensus 113 ~~r~~~K~~~~~~~~~~l~~l~---~~~~~Ii~GD~Nva~~ 150 (250)
T PRK13911 113 LSRLSYRMSWEVEFKKFLKALE---LKKPVIVCGDLNVAHN 150 (250)
T ss_pred CcchHHHHHHHHHHHHHHHhcc---cCCCEEEEccccCCCC
Confidence 223322 233444555442 3579999999998886
No 18
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.18 E-value=2.8e-10 Score=120.56 Aligned_cols=157 Identities=20% Similarity=0.155 Sum_probs=101.0
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcC-CCcEEEEeeecchhhH--------HHH----
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLW-SADIMCFQEVDRFQDL--------EVE---- 254 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~-dPDIICLQEVD~f~dL--------~~~---- 254 (772)
..++|+|||+.+...++ .-+|.. -+.+.|... .+|||+|||++..... .+.
T Consensus 23 ~~~~~~twn~qg~s~~~-------------~~kw~~---~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~ 86 (271)
T PRK15251 23 EDYKVATWNLQGSSAST-------------ESKWNV---NVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGI 86 (271)
T ss_pred ccceEEEeecCCCCCCC-------------hhhhhh---hHHHHhcCCCCCCEEEEEecCCCcccccccccccccccccc
Confidence 57999999999865433 235652 244455665 5999999999873211 110
Q ss_pred --------HH---hCCceEEEecCC--CCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEeccccccccc
Q 047201 255 --------LK---FRGYTGIWKMRT--GNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSA 321 (772)
Q Consensus 255 --------L~---~~GY~gvf~~Rt--g~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~ 321 (772)
|. .-++.++|.++. +.+..|+||+ ||++..+...+....... ..++.++.
T Consensus 87 ~v~ey~w~l~~~srpgm~YiY~~aiD~~ggr~glAIl---Sr~~a~~~~~l~~p~~~~----Rpilgi~i---------- 149 (271)
T PRK15251 87 PIDEYTWNLGTRSRPNQVYIYYSRVDVGANRVNLAIV---SRRRADEVIVLRPPTVAS----RPIIGIRI---------- 149 (271)
T ss_pred CcccEEEEccCccCCCceEEEEecccCCCCceeEEEE---ecccccceEEecCCCCcc----cceEEEEe----------
Confidence 10 112444444332 3567899999 999977655555432211 12223332
Q ss_pred CCCCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHH-HhhccCCCCCEEEEcCCCCCCCcHHHHHHH
Q 047201 322 ALPTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAH-AVSKTWNDAPVVLCGDFNCTPKSPLYNFIL 392 (772)
Q Consensus 322 ~Lp~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~-aLsk~~~~vPVILcGDFNStPdS~vYr~Ls 392 (772)
+ .+++++||+.+.. +.-|.+|++.+.+.+. . .+..|+|||||||..|++..+.++.
T Consensus 150 -------~--~~~ffstH~~a~~--~~da~aiV~~I~~~f~~~----~~~~pw~I~GDFNr~P~sl~~~l~~ 206 (271)
T PRK15251 150 -------G--NDVFFSIHALANG--GTDAGAIVRAVHNFFRPN----MRHINWMIAGDFNRSPDRLESTLDT 206 (271)
T ss_pred -------c--CeEEEEeeecCCC--CccHHHHHHHHHHHHhhc----cCCCCEEEeccCCCCCcchhhhhcc
Confidence 2 2799999999852 3448889988888775 3 2358999999999999998776653
No 19
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=98.80 E-value=6.5e-08 Score=112.78 Aligned_cols=211 Identities=16% Similarity=0.207 Sum_probs=133.1
Q ss_pred CcccccccCCC-CCCCCceEEEeeccccCcc---cccccccccccCCc--cccchHHHHHHHHHHhhcCCCcEEEEeeec
Q 047201 173 YRNWEHSKASL-PPYSERFVVLSYNILADYL---ALSHRSKLYFHIPR--HLLDWEWRKRSILFELGLWSADIMCFQEVD 246 (772)
Q Consensus 173 ~R~W~~~~~~~-~~~~~~fRVMSYNILAd~~---a~s~~~~lY~ycP~--~~LdWd~Rk~lIikEI~~~dPDIICLQEVD 246 (772)
++.|....... +.-.+.|||.+|||++... .....-..|..|-. -..+....+.+|+..|...++|||+|-||+
T Consensus 446 ~~~~~~pr~at~~~v~G~LkiasfNVlNyf~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eie 525 (798)
T COG2374 446 YFTYANPRPATPPDVGGSLKIASFNVLNYFNKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIE 525 (798)
T ss_pred ccccCCCccCCccccCceeeeeeeehhhhhccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeee
Confidence 45554443322 2335789999999997322 00001122322222 123345566789999999999999999998
Q ss_pred c--h--------hhHHHHHH-hC----CceEEEecCC---CCCceeEEEEEccCcceeEEeeeeeccCC----C-CCCce
Q 047201 247 R--F--------QDLEVELK-FR----GYTGIWKMRT---GNAIDGCAIFWRASRFKLLYEEGIEFNKL----G-LRDNV 303 (772)
Q Consensus 247 ~--f--------~dL~~~L~-~~----GY~gvf~~Rt---g~~~dG~AIFyRrSRF~LL~~e~I~fs~l----g-lrdnV 303 (772)
. | .+|...|. +. -|..+...+. +...-+++++||.++..++....+.=... + ..++.
T Consensus 526 n~~~~~~s~~ai~~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~~~~~n 605 (798)
T COG2374 526 NNGYGTDSGDAIAQLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGEIDDNN 605 (798)
T ss_pred ccCCCCCcHHHHHHHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccceEEecccccccccccccccccccccc
Confidence 6 2 23333342 22 2555543332 33456899999999999887765542211 1 11222
Q ss_pred eEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCC----CC----------ChHhHHHHHHHHHHHHHHhhccCC
Q 047201 304 AQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFN----PK----------RGEIKLGQVRTLLEKAHAVSKTWN 369 (772)
Q Consensus 304 aqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~n----Pk----------~~dIRL~Qa~iLL~~L~aLsk~~~ 369 (772)
++-.+.+.++ ...++.+|+|+.-||++. |- ....|.+|+..|..+|......+.
T Consensus 606 ~R~~laqtF~------------~~~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~~~ 673 (798)
T COG2374 606 ARPPLAQTFQ------------DLSGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTGKA 673 (798)
T ss_pred cCcchhhhhh------------hccCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCccccc
Confidence 2222222221 123556799999999984 21 234699999999999987665567
Q ss_pred CCCEEEEcCCCCCCCcHHHHHHHhCC
Q 047201 370 DAPVVLCGDFNCTPKSPLYNFILEQK 395 (772)
Q Consensus 370 ~vPVILcGDFNStPdS~vYr~Ls~~~ 395 (772)
+.+++|.||||+.-.+.+++.|.+.+
T Consensus 674 d~~~viLGD~N~y~~edpI~~l~~aG 699 (798)
T COG2374 674 DADIVILGDFNDYAFEDPIQALEGAG 699 (798)
T ss_pred CCCEEEEeccchhhhccHHHHHhhcC
Confidence 89999999999999999999999844
No 20
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.36 E-value=2e-06 Score=92.86 Aligned_cols=159 Identities=17% Similarity=0.141 Sum_probs=93.1
Q ss_pred CCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecch-hhHHHHHHhCCceEEEe
Q 047201 187 SERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRF-QDLEVELKFRGYTGIWK 265 (772)
Q Consensus 187 ~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f-~dL~~~L~~~GY~gvf~ 265 (772)
...++++++|++++... ..+++..|+..++|+|-+||+..+ .+....+. ..|.++-.
T Consensus 86 ~~~~~~l~~N~r~~n~~---------------------~~k~Lsl~~~~~~D~v~~~E~~~~~~~~~~~l~-~~yP~~~~ 143 (309)
T COG3021 86 QRLLWNLQKNVRFDNAS---------------------VAKLLSLIQQLDADAVTTPEGVQLWTAKVGALA-AQYPAFIL 143 (309)
T ss_pred chhhhhhhhhccccCcC---------------------HHHHHHHHhhhCcchhhhHHHHHHhHhHHHHHH-HhCCceee
Confidence 35689999998875431 134555666777999999999874 23332343 34554322
Q ss_pred cCCCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCC
Q 047201 266 MRTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPK 345 (772)
Q Consensus 266 ~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk 345 (772)
...+.+..+.+++-++-..... +..-++.. ....++ .+.. ...+..+.|++.|..-.+-
T Consensus 144 ~~~~~~~~~~a~~sr~~~~~~~-~~e~~~~~-----pk~~~~-t~~~--------------~~~g~~l~v~~lh~~~~~~ 202 (309)
T COG3021 144 CQHPTGVFTLAILSRRPCCPLT-EAEPWLRL-----PKSALA-TAYP--------------LPDGTELTVVALHAVNFPV 202 (309)
T ss_pred cCCCCCeeeeeecccccccccc-ccCccccC-----Ccccee-EEEE--------------cCCCCEEEEEeeccccccC
Confidence 2223356777777333221111 11111111 111222 2221 1357899999999983343
Q ss_pred ChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHHHHHHHh
Q 047201 346 RGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPLYNFILE 393 (772)
Q Consensus 346 ~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~vYr~Ls~ 393 (772)
+.+.-..|...|.+.+... .-|||++||||++|.|..++.|..
T Consensus 203 ~~~~~~~ql~~l~~~i~~~-----~gpvIlaGDfNa~pWS~~~~R~~~ 245 (309)
T COG3021 203 GTDPQRAQLLELGDQIAGH-----SGPVILAGDFNAPPWSRTAKRMAA 245 (309)
T ss_pred CccHHHHHHHHHHHHHHcC-----CCCeEEeecCCCcchhHHHHHHHH
Confidence 3333226766666655544 369999999999999999998875
No 21
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.26 E-value=1.7e-05 Score=85.80 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=44.0
Q ss_pred CCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHhhc----cCCCCCEEEEcCCCCCCCc----HHHHHHHhC
Q 047201 329 HSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSK----TWNDAPVVLCGDFNCTPKS----PLYNFILEQ 394 (772)
Q Consensus 329 ~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk----~~~~vPVILcGDFNStPdS----~vYr~Ls~~ 394 (772)
.+..|+++|+||.++...-+.|..|...+++.+.--.. ....-.+|++||||-.-+. .+-+++..+
T Consensus 136 ~~~~~~fv~~HL~a~~~~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~ 209 (310)
T smart00128 136 SDTSFCFVNSHLAAGASNVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKK 209 (310)
T ss_pred cCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeecCCCHHHHHHHHhhC
Confidence 34689999999999766556788898888766521000 1124679999999976542 333555444
No 22
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.011 Score=71.47 Aligned_cols=131 Identities=16% Similarity=0.254 Sum_probs=78.8
Q ss_pred CceeEE--EEEccCcceeEEeeeeeccCCCC---CCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCC
Q 047201 271 AIDGCA--IFWRASRFKLLYEEGIEFNKLGL---RDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPK 345 (772)
Q Consensus 271 ~~dG~A--IFyRrSRF~LL~~e~I~fs~lgl---rdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk 345 (772)
+.-|++ ||.|.++.+.|....+.-.+.|+ ..|-+.+ .+++. -.+-.||+++.||.+.-.
T Consensus 624 QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAV-AIrf~---------------~~~TsfCFv~SHlAAG~s 687 (1080)
T KOG0566|consen 624 QLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAV-AIRFV---------------YHATSFCFVCSHLAAGQS 687 (1080)
T ss_pred hhheeeEEEEEcccccchhhhcccceeecccccccCCCceE-EEEEE---------------eccccEEEEecccccccc
Confidence 344654 45588888877655544444433 3344432 23332 123469999999998544
Q ss_pred ChHhHHHHHHHHHHHHHHh--hccCCCCCEEEEcCCCCC---CCcHHHHHHHhCCCC----CCCCccccccCCccccccC
Q 047201 346 RGEIKLGQVRTLLEKAHAV--SKTWNDAPVVLCGDFNCT---PKSPLYNFILEQKLD----LSGVDRDKVSGQASAEIRE 416 (772)
Q Consensus 346 ~~dIRL~Qa~iLL~~L~aL--sk~~~~vPVILcGDFNSt---PdS~vYr~Ls~~~Ld----ls~~Dr~kvSGq~~s~f~~ 416 (772)
.-+.|..-.+.|.+.|.=- ......-.|+.|||||-. +++.+-+.+..+.++ ++-+.-.+.+|++-.+|+.
T Consensus 688 nv~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E 767 (1080)
T KOG0566|consen 688 NVEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHE 767 (1080)
T ss_pred hHhhhhhhHHHHHHhccccCCccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcCcccccccc
Confidence 4455666677776665210 011235679999999954 567888899888765 3334445556777666654
Q ss_pred C
Q 047201 417 P 417 (772)
Q Consensus 417 ~ 417 (772)
+
T Consensus 768 ~ 768 (1080)
T KOG0566|consen 768 G 768 (1080)
T ss_pred c
Confidence 3
No 23
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=93.97 E-value=0.075 Score=63.62 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCCCCC
Q 047201 133 QFRPPPLYNRNPQFRRP 149 (772)
Q Consensus 133 ~~~~p~~~~~~~~~~~p 149 (772)
--+.|||.||.|-++.|
T Consensus 566 ~aG~PPpPppppg~~gp 582 (1102)
T KOG1924|consen 566 IAGGPPPPPPPPGGGGP 582 (1102)
T ss_pred ccCCCCccCCCCCCCCC
Confidence 33445555556666633
No 24
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=93.25 E-value=0.084 Score=58.74 Aligned_cols=79 Identities=32% Similarity=0.444 Sum_probs=72.4
Q ss_pred cccccceeeecccccccccCCcCCCCCCceecccCCCCcceeEEEecCC--ceeeeccCCCCcccccCCCCCCCCCCCCc
Q 047201 680 YLEHPLQLRSTYAEVEDCTGTRDSHGEPLVTSYNRRFKGTVDYILRSEG--LQTVRVLAPIPKHAMQWTPGYPTKKWGSD 757 (772)
Q Consensus 680 ~~~H~l~L~SaY~~~~~~~~~~d~~gep~~Tnyt~~F~gtiDYI~ys~~--L~~~~vL~~~~~~~l~~~~glP~~~~pSD 757 (772)
+..||+.|+|.+ +.|||.||||+++|+|.||||||.++ ++++++|+.+++++..+..||||.++|||
T Consensus 287 ~~~h~~n~~~~~-----------~~~~~~fTN~t~~~kG~iDYIfy~~~~~~~~~~~l~~ve~e~~~k~~G~pn~~~pSd 355 (378)
T COG5239 287 KFVHPENLKSDN-----------SKGELGFTNWTPGFKGVIDYIFYHGGLLTRQTGLLGVVEGEYASKVIGLPNMPFPSD 355 (378)
T ss_pred cccChhhcccCC-----------CcCCcccccccccccceeEEEEEecCcceeeeccccccccchhhhhcccCCCCCccc
Confidence 468999999933 35899999999999999999999954 99999999999999999999999999999
Q ss_pred hhhhheeEeeec
Q 047201 758 HIALASEVAFVE 769 (772)
Q Consensus 758 HiaL~aef~~~~ 769 (772)
||+|+|||++..
T Consensus 356 hipl~~ef~~~~ 367 (378)
T COG5239 356 HIPLLAEFASDH 367 (378)
T ss_pred cccchhcccccc
Confidence 999999999864
No 25
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=91.26 E-value=0.3 Score=43.97 Aligned_cols=25 Identities=28% Similarity=0.611 Sum_probs=12.0
Q ss_pred HHHHHHhhccCCCCCEEEEcCCCCC
Q 047201 358 LEKAHAVSKTWNDAPVVLCGDFNCT 382 (772)
Q Consensus 358 L~~L~aLsk~~~~vPVILcGDFNSt 382 (772)
.+.|.++.+.....++||+||||..
T Consensus 18 ~~~l~~~~~~~~~~~~Ii~GDFN~~ 42 (119)
T PF14529_consen 18 FDQLRQLLKNLPPAPIIIGGDFNAH 42 (119)
T ss_dssp HHHHHHHHHCCTTSSEEEEEE----
T ss_pred HHHHHHHHHhCCCCCEEEEeECCCC
Confidence 3344444332233399999999984
No 26
>PRK11756 exonuclease III; Provisional
Probab=87.81 E-value=0.26 Score=51.61 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=38.6
Q ss_pred eeeecccccccccCCcCCCCCCceecc--cC-----CCCcceeEEEecCCceeeeccCCCCcccccCCCCCCCCCCCCch
Q 047201 686 QLRSTYAEVEDCTGTRDSHGEPLVTSY--NR-----RFKGTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDH 758 (772)
Q Consensus 686 ~L~SaY~~~~~~~~~~d~~gep~~Tny--t~-----~F~gtiDYI~ys~~L~~~~vL~~~~~~~l~~~~glP~~~~pSDH 758 (772)
-|..+|..+.+ .-.+.||=+ .. ...-=|||||.|..|.- +|.+. .++... ....+||||
T Consensus 194 ~l~D~~R~~~p-------~~~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~~~~-~v~~~---~i~~~~---~~~~~~SDH 259 (268)
T PRK11756 194 GLVDTFRQLNP-------DVNDRFSWFDYRSKGFDDNRGLRIDLILATQPLAE-RCVET---GIDYDI---RGMEKPSDH 259 (268)
T ss_pred CcEeehhhhCC-------CCCCcccCcCCcccccccCCceEEEEEEeCHHHHh-hheEe---EEeHHH---hCCCCCCCc
Confidence 37777776643 112445522 21 12347999999966651 12111 122222 223579999
Q ss_pred hhhheeEee
Q 047201 759 IALASEVAF 767 (772)
Q Consensus 759 iaL~aef~~ 767 (772)
.++++||.+
T Consensus 260 ~PV~~~~~~ 268 (268)
T PRK11756 260 APIWATFKL 268 (268)
T ss_pred ccEEEEEeC
Confidence 999999974
No 27
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=87.65 E-value=1.9 Score=51.29 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=34.8
Q ss_pred CCeEEEEEEecCCCCCChH--hHHHHHHHHHHHHH--Hhhc------cCCCCCEEEEcCCCCCCC
Q 047201 330 SKKVAICNIHVLFNPKRGE--IKLGQVRTLLEKAH--AVSK------TWNDAPVVLCGDFNCTPK 384 (772)
Q Consensus 330 gk~LvVaNTHL~~nPk~~d--IRL~Qa~iLL~~L~--aLsk------~~~~vPVILcGDFNStPd 384 (772)
+..||++|+||.++.+..+ -|..+...|++.+. .... ....--||++||||-.-+
T Consensus 419 ~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYRId 483 (621)
T PLN03191 419 QSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYRLN 483 (621)
T ss_pred CcEEEEEEeccccccccchHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCcccccc
Confidence 4589999999998654433 36667777765531 0000 011346999999996543
No 28
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=87.44 E-value=0.82 Score=55.32 Aligned_cols=8 Identities=25% Similarity=0.954 Sum_probs=3.4
Q ss_pred CccccchH
Q 047201 215 PRHLLDWE 222 (772)
Q Consensus 215 P~~~LdWd 222 (772)
|....+|.
T Consensus 625 ~Mrr~nW~ 632 (1102)
T KOG1924|consen 625 PMRRFNWS 632 (1102)
T ss_pred ccccCCcc
Confidence 33444443
No 29
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=87.07 E-value=2.5 Score=46.64 Aligned_cols=62 Identities=15% Similarity=0.239 Sum_probs=36.3
Q ss_pred CCCeEEEEEEecCCCCCChHh-----------HHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHH-HHHHH
Q 047201 329 HSKKVAICNIHVLFNPKRGEI-----------KLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPL-YNFIL 392 (772)
Q Consensus 329 ~gk~LvVaNTHL~~nPk~~dI-----------RL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~v-Yr~Ls 392 (772)
++..|.++|+||..+....+. |..-...++.....+. ....|+++.||||-.-+... +++|.
T Consensus 78 ~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~--~~~~~lF~fGDfNyRld~~~~~e~L~ 151 (356)
T PTZ00312 78 GTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFI--SPSDPLFIFGDFNVRLDGHNLLEWLK 151 (356)
T ss_pred CCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhcc--CCCCcEEEeccceeeeccccHHHHhc
Confidence 456799999999986433222 2222223333322222 25689999999997765433 44444
No 30
>PTZ00297 pantothenate kinase; Provisional
Probab=86.78 E-value=0.52 Score=61.23 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=31.6
Q ss_pred cceeEEEecCCceeeeccCCCCcccccCCCCCCCCCCCCchhhhheeEeeecc
Q 047201 718 GTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAFVET 770 (772)
Q Consensus 718 gtiDYI~ys~~L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~~~~ 770 (772)
..|||||++..+.+.+. .......+. + +...|+|||++|+|||+++.+
T Consensus 270 ~riD~Ifv~~~v~v~~~-~v~~~~~~~---~-~~~~~~SDH~Pv~a~l~l~~~ 317 (1452)
T PTZ00297 270 QRQDYFFVTPCVQVEKP-RIEKFVVSS---R-RPYTYLSDHFGVSARLTLPLN 317 (1452)
T ss_pred cceeEEEEeCCceEEEE-EEecccccC---C-CCCCCcCcCccEEEEEEeCCC
Confidence 58999999977776543 111111111 2 334589999999999999654
No 31
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.21 E-value=0.36 Score=53.08 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=26.1
Q ss_pred cceeEEEecCCceeeeccCCCCcccccCCCCCCCCCCCCchhhhheeEeee
Q 047201 718 GTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAFV 768 (772)
Q Consensus 718 gtiDYI~ys~~L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~~ 768 (772)
=-||||||++ +.+.+ ..-+|. .+|||.+|++||.+-
T Consensus 273 ~PIDhvf~rg-l~~~k------------a~rl~~--~gSDH~PLLveF~~~ 308 (309)
T COG3021 273 LPIDHVFYRG-LTVMK------------ARRLPD--RGSDHRPLLVEFSYG 308 (309)
T ss_pred CCcceeeecC-cchhh------------hhhccc--cCCCCCceEEEEEec
Confidence 4599999996 44433 223343 799999999999864
No 32
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.65 E-value=2.9 Score=48.24 Aligned_cols=8 Identities=50% Similarity=1.045 Sum_probs=3.6
Q ss_pred CCCCCCCC
Q 047201 68 RSHRRGFS 75 (772)
Q Consensus 68 ~~~~rg~s 75 (772)
|.-+|||.
T Consensus 377 r~~~~gf~ 384 (483)
T KOG2236|consen 377 RDQNRGFK 384 (483)
T ss_pred cccccCCC
Confidence 33444544
No 33
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=78.71 E-value=2.6 Score=41.93 Aligned_cols=30 Identities=17% Similarity=0.415 Sum_probs=19.0
Q ss_pred ccccccccchhhhhhhhhccccccceeeec
Q 047201 17 PCHLACPYNLYFSLFSFCLSFHPYYLNIFQ 46 (772)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (772)
-||..|------.-+.||-|+--|+.++.-
T Consensus 30 ~C~~dC~~~Ccd~~~~~Ccsy~~yi~~~ls 59 (155)
T PF10873_consen 30 QCGKDCTSYCCDGTTPYCCSYYAYIGDVLS 59 (155)
T ss_pred HhcccccceecCCCCcchhchhhhhccccc
Confidence 577766221112456788888888888765
No 34
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=75.28 E-value=6.8 Score=43.42 Aligned_cols=65 Identities=22% Similarity=0.430 Sum_probs=45.2
Q ss_pred CCCCeEEEEEEecCCC----------C-CChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcH-HHHHHHhC
Q 047201 328 AHSKKVAICNIHVLFN----------P-KRGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSP-LYNFILEQ 394 (772)
Q Consensus 328 t~gk~LvVaNTHL~~n----------P-k~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~-vYr~Ls~~ 394 (772)
..++.|-++|.||..+ | .....|..|...+|+.|..- ..++..+++.||||..-+|. +.+.|...
T Consensus 166 I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~--~~~~~~~fVfGdfNfrLds~s~ln~l~a~ 242 (391)
T KOG1976|consen 166 IHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEE--GLRNDAIFVFGDFNFRLDSTSLLNYLAAT 242 (391)
T ss_pred EcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhh--ccCceEEEEecccccccchHHHHHHHhcC
Confidence 3578999999999653 1 12345777777777776432 23467899999999998874 56677653
No 35
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=75.16 E-value=3.4 Score=44.64 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=47.7
Q ss_pred cccccccceeeecccccccccCCcCCCC--CCceecccCCCCcceeEEEecCCceeeeccCCCCcccccCCCCCCCCCCC
Q 047201 678 CTYLEHPLQLRSTYAEVEDCTGTRDSHG--EPLVTSYNRRFKGTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWG 755 (772)
Q Consensus 678 ~~~~~H~l~L~SaY~~~~~~~~~~d~~g--ep~~Tnyt~~F~gtiDYI~ys~~L~~~~vL~~~~~~~l~~~~glP~~~~p 755 (772)
+-....++....++.....- ..+ +..|.+.++-- -|||||-+..+.+-++= +..-+..-.-
T Consensus 183 r~~~~~~~~~~~~~~~~~~~-----a~~~~~~tfps~~p~l--riD~Ifvs~~~~i~~~~----------v~~~~~a~~a 245 (259)
T COG3568 183 RLAARSPLNAQAALTGAFAP-----AVGRTIRTFPSNTPLL--RLDRIFVSKELAIRSVH----------VLTDRLARVA 245 (259)
T ss_pred eeccCCchhhccccccccCc-----ccCcccCCCCCCCccc--cccEEEecCcccEEEEE----------eecCCCcccc
Confidence 66667777766666555321 112 44677777766 89999999767664431 1111223456
Q ss_pred CchhhhheeEeee
Q 047201 756 SDHIALASEVAFV 768 (772)
Q Consensus 756 SDHiaL~aef~~~ 768 (772)
|||++|.||+.++
T Consensus 246 SDHlPl~aeL~~~ 258 (259)
T COG3568 246 SDHLPLLAELRLK 258 (259)
T ss_pred ccccceEEEEecC
Confidence 9999999999876
No 36
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=74.13 E-value=1.8 Score=44.98 Aligned_cols=38 Identities=29% Similarity=0.246 Sum_probs=23.7
Q ss_pred ceeEEEecCCce--eeeccCCCCcccccCCCCCCCCCCCCchhhhheeE
Q 047201 719 TVDYILRSEGLQ--TVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEV 765 (772)
Q Consensus 719 tiDYI~ys~~L~--~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef 765 (772)
-|||||.|..+. +... .+..... ....||||.++++||
T Consensus 215 RID~i~~s~~~~~~v~~~------~i~~~~~---~~~~~SDH~Pv~~~~ 254 (254)
T TIGR00195 215 RIDYFLVSEPLKERCVDC------GIDYDIR---GSEKPSDHCPVVLEF 254 (254)
T ss_pred EEEEEEECHHHHhhhhEE------EEcHHHh---cCCCCCCcccEEEeC
Confidence 699999996554 3222 1111111 234799999999986
No 37
>PRK05421 hypothetical protein; Provisional
Probab=73.14 E-value=2.8 Score=44.43 Aligned_cols=39 Identities=23% Similarity=0.423 Sum_probs=27.1
Q ss_pred CCcceeEEEecCCceeeeccCCCCcccccCCCCCCCCCCCCchhhhheeEeeec
Q 047201 716 FKGTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAFVE 769 (772)
Q Consensus 716 F~gtiDYI~ys~~L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~~~ 769 (772)
|.-.|||||++ ++.++++-- + ....|||.+|+++|+++.
T Consensus 225 ~~~~ID~I~~~-~~~v~~~~v------~--------~~~~SDH~Pv~a~l~l~~ 263 (263)
T PRK05421 225 FGRPLDFVFYR-GLNVSKASV------L--------VTRASDHNPLLVEFSLKK 263 (263)
T ss_pred cCCCcceEEEC-CcEEEEEEc------C--------CCCCCCccCEEEEEEecC
Confidence 45689999985 555543310 0 135999999999999863
No 38
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=64.47 E-value=18 Score=41.93 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=34.7
Q ss_pred CeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHh--hccCCCCCEEEEcCCCCC
Q 047201 331 KKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAV--SKTWNDAPVVLCGDFNCT 382 (772)
Q Consensus 331 k~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aL--sk~~~~vPVILcGDFNSt 382 (772)
..+|++|.||.+.-..-+.|..-.+.+.+-|.-- .+.+....++++||||-.
T Consensus 165 t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 165 TSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred CCcEEEecchhcccccHHHHHHHHHHHHHheecCCCceecccceEEEecccCce
Confidence 3699999999986555566777777666555210 011234569999999943
No 39
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=63.36 E-value=5.5 Score=40.73 Aligned_cols=35 Identities=34% Similarity=0.361 Sum_probs=21.2
Q ss_pred cceeEEEecCCce--eeeccCCCCcccccCCCCCCCCCCCCchhhhheeE
Q 047201 718 GTVDYILRSEGLQ--TVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEV 765 (772)
Q Consensus 718 gtiDYI~ys~~L~--~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef 765 (772)
-.|||||.+..+. +... .+..... +|||.+++++|
T Consensus 218 ~rID~i~~s~~~~~~~~~~------~i~~~~~-------~SDH~pv~~~~ 254 (255)
T TIGR00633 218 WRIDYFLVSEPLAERVVDS------YIDSEIR-------GSDHCPIVLEL 254 (255)
T ss_pred eEEEEEEECHHHHhhhcEe------EECCCCC-------CCCcccEEEEE
Confidence 3699999985443 1111 1111111 39999999997
No 40
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=62.35 E-value=4.9 Score=42.72 Aligned_cols=80 Identities=20% Similarity=0.213 Sum_probs=42.7
Q ss_pred CCCCHHHHhhhcCCCccccccccceeeecccccccccCCcCCCCCCceecccC-------CCCcceeEEEecCCceeeec
Q 047201 662 SLWTPMEIATATGNADCTYLEHPLQLRSTYAEVEDCTGTRDSHGEPLVTSYNR-------RFKGTVDYILRSEGLQTVRV 734 (772)
Q Consensus 662 ~~wt~~ei~~atg~~~~~~~~H~l~L~SaY~~~~~~~~~~d~~gep~~Tnyt~-------~F~gtiDYI~ys~~L~~~~v 734 (772)
..+||+|-+.-..-. .+ .|..+|-.+.+ ..+-.||=|.. ...-.||||+.|+.+... +
T Consensus 164 ~gf~~~er~~f~~~l-----~~--gl~D~~R~~~p-------~~~~~yTww~~~~~~~~~n~g~RIDyilvs~~~~~~-~ 228 (250)
T PRK13911 164 AGFSDEERGKFSELL-----NA--GFIDTFRYFYP-------NKEKAYTWWSYMQQARDKNIGWRIDYFLCSNPLKTR-L 228 (250)
T ss_pred CCcCHHHHHHHHHHH-----hc--CCeehhhhhCC-------CCCCCCccCCCcCCccccCCcceEEEEEEChHHhhh-E
Confidence 358888854333221 11 36666655543 10123554432 334589999999656421 1
Q ss_pred cCCCCcccccCCCCCCCCCCCCchhhhheeEe
Q 047201 735 LAPIPKHAMQWTPGYPTKKWGSDHIALASEVA 766 (772)
Q Consensus 735 L~~~~~~~l~~~~glP~~~~pSDHiaL~aef~ 766 (772)
... .+ .+ ...+|||.+++++|.
T Consensus 229 ~~~----~i-----~~-~~~~SDH~Pv~~~~~ 250 (250)
T PRK13911 229 KDA----LI-----YK-DILGSDHCPVGLELV 250 (250)
T ss_pred EEE----EE-----CC-CCCCCCcccEEEEeC
Confidence 110 11 11 233699999999873
No 41
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=51.97 E-value=19 Score=40.39 Aligned_cols=128 Identities=24% Similarity=0.296 Sum_probs=61.6
Q ss_pred HhhcCCCcEEEEeeecch-h---hHHHHHHhCCceEEEecC-C-CCCceeEEEEEccCcceeEEeeeeeccCCC-CCCce
Q 047201 231 ELGLWSADIMCFQEVDRF-Q---DLEVELKFRGYTGIWKMR-T-GNAIDGCAIFWRASRFKLLYEEGIEFNKLG-LRDNV 303 (772)
Q Consensus 231 EI~~~dPDIICLQEVD~f-~---dL~~~L~~~GY~gvf~~R-t-g~~~dG~AIFyRrSRF~LL~~e~I~fs~lg-lrdnV 303 (772)
.+.....|++|+||...- . ...+. ..||...+..- . ..+..|.+.. ++++.+... +.+..++ -.+.+
T Consensus 85 ~~~~~l~d~~~~~~t~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~y~~~~~~---~~~~p~~v~-~~~~~~~s~h~~~ 158 (335)
T KOG1294|consen 85 EISSELRDLQCLLETKCTIDSGPCSHPT--EKGYTHSLLSCASKKDGYSGEIDY---SKFKPLKVH-YGFGAMGSDHRPV 158 (335)
T ss_pred hccccchhhhhhhhccceeccCcceecc--cCCcccceeecccccCCccceeee---eecccceee-ecccccCCccCcc
Confidence 456678999999998652 1 12222 34775444321 1 1223344444 555444221 1222111 12345
Q ss_pred eEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCChHhHHHH------HHHHHHHHHHhhc-cCCCCCEEEE
Q 047201 304 AQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKRGEIKLGQ------VRTLLEKAHAVSK-TWNDAPVVLC 376 (772)
Q Consensus 304 aqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~dIRL~Q------a~iLL~~L~aLsk-~~~~vPVILc 376 (772)
++++.++. ..+.++|+|+.-. .++++.+.= ...+...+.+... .....|++.|
T Consensus 159 g~~i~~e~-------------------e~~~l~~~y~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~ 218 (335)
T KOG1294|consen 159 GRVIIAEF-------------------EIFILINTYVPNI-GGGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVIC 218 (335)
T ss_pred ceEEEEee-------------------cceeeccccCccc-ccccchhhhhhhhhhHHHHHHHhhhccccccccCcceec
Confidence 66555553 3588889988642 223332211 1111122222221 1123589999
Q ss_pred cCCCCCCC
Q 047201 377 GDFNCTPK 384 (772)
Q Consensus 377 GDFNStPd 384 (772)
||.|..+.
T Consensus 219 gd~nvs~~ 226 (335)
T KOG1294|consen 219 GDLNVSHE 226 (335)
T ss_pred cccccchh
Confidence 99998774
No 42
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=51.82 E-value=13 Score=42.14 Aligned_cols=48 Identities=21% Similarity=0.309 Sum_probs=28.3
Q ss_pred CcceeEEEec-CCceeeeccCCCCcccccCCCCCCCCCCC-CchhhhheeEeeecc
Q 047201 717 KGTVDYILRS-EGLQTVRVLAPIPKHAMQWTPGYPTKKWG-SDHIALASEVAFVET 770 (772)
Q Consensus 717 ~gtiDYI~ys-~~L~~~~vL~~~~~~~l~~~~glP~~~~p-SDHiaL~aef~~~~~ 770 (772)
.--|||++|+ ..+... + ++.---.+=.|...++ |||.||||-|.+.+.
T Consensus 246 ~~RiDYvl~k~~~~~~~--~----a~~~~t~~rvP~~d~s~SDH~Al~a~L~I~~~ 295 (422)
T KOG3873|consen 246 GKRIDYVLVKPGDCNAK--I----AEVEFTEPRVPGEDCSYSDHEALMATLKIFKQ 295 (422)
T ss_pred ceeeeEEEEcCcceEEE--e----eeEEecCCCCCCCCCCccchhhheeEEEeecC
Confidence 3569999998 443332 1 1111111123444444 999999999988764
No 43
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=49.84 E-value=13 Score=47.36 Aligned_cols=9 Identities=33% Similarity=0.526 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q 047201 136 PPPLYNRNP 144 (772)
Q Consensus 136 ~p~~~~~~~ 144 (772)
||||+||+-
T Consensus 24 pppPppPg~ 32 (2365)
T COG5178 24 PPPPPPPGV 32 (2365)
T ss_pred CCCccCCCc
Confidence 444444443
No 44
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.82 E-value=45 Score=32.17 Aligned_cols=56 Identities=13% Similarity=0.075 Sum_probs=33.3
Q ss_pred CCeEEEEEEecCCCCCChHh-HHHHHHHHHHHHHHhhccCCC---------CCEEEEcCCCCCCCc
Q 047201 330 SKKVAICNIHVLFNPKRGEI-KLGQVRTLLEKAHAVSKTWND---------APVVLCGDFNCTPKS 385 (772)
Q Consensus 330 gk~LvVaNTHL~~nPk~~dI-RL~Qa~iLL~~L~aLsk~~~~---------vPVILcGDFNStPdS 385 (772)
+..++.++.|+..+-...+. |..-...+++.+.-....... --||..||+|....+
T Consensus 58 ~~~~~~v~~hl~~~~~~~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~ 123 (145)
T KOG0565|consen 58 QTSFCFVISHLTSGVHKVYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSG 123 (145)
T ss_pred CceEEEEEecccccchhhHHHhhccHHHHHhhccccccCcccccccccccccEEEEecceeeeecC
Confidence 45799999999986544444 444444444443221111111 248899999987654
No 45
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=42.02 E-value=7.9 Score=41.98 Aligned_cols=52 Identities=27% Similarity=0.328 Sum_probs=31.4
Q ss_pred eecccCCCC------c-ceeEEEecCCceeeeccCCCCcccccCCCCCCCCCCCCchhhhheeEee
Q 047201 709 VTSYNRRFK------G-TVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAF 767 (772)
Q Consensus 709 ~Tnyt~~F~------g-tiDYI~ys~~L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~ 767 (772)
||=|..... | =||||+-|+.|.-- | .+.++++.+.|. .=||||.++.+||.+
T Consensus 203 YTwW~YR~~~~~~n~G~RID~~l~S~~L~~~-~---~~a~I~~~~rg~---e~pSDHaPV~~e~~~ 261 (261)
T COG0708 203 YTWWDYRANAARRNRGWRIDYILVSPALADR-L---KDAGIDREVRGW---EKPSDHAPVWVELDL 261 (261)
T ss_pred ccccccccchhhhcCceeEEEEEeCHHHHHH-H---HhcCccHHHhcC---CCCCCcCcEEEEecC
Confidence 775555433 3 49999999555431 1 111233333332 458999999999964
No 46
>KOG3168 consensus U1 snRNP component [Transcription]
Probab=42.01 E-value=31 Score=35.32 Aligned_cols=15 Identities=47% Similarity=1.174 Sum_probs=7.0
Q ss_pred CCCCCCCCC-CCCCCC
Q 047201 124 QPPPYNQNQ-QFRPPP 138 (772)
Q Consensus 124 ~~~~~~~~~-~~~~p~ 138 (772)
||||||--| -|+|||
T Consensus 158 ~~~~~~~~~p~~~ppp 173 (177)
T KOG3168|consen 158 PPPPNGRAPPKFGPPP 173 (177)
T ss_pred CCCCCCCCCCCCCCCC
Confidence 445555544 334433
No 47
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=37.11 E-value=49 Score=35.76 Aligned_cols=27 Identities=33% Similarity=0.664 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 047201 106 GNYTAVPPAPFYQNQPFRQPPPYNQNQ 132 (772)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (772)
|++..+|+.+.|..++..|+|+|+..+
T Consensus 91 G~~~~~~~~~~p~~~~~~~~~~~~~~~ 117 (247)
T PF09849_consen 91 GGGSPSPPPPQPAPQPPAPPPPWGSQP 117 (247)
T ss_pred CCCCCCCCCCCCCCCCcCCCCCCCCCC
Confidence 444444444444445555566666655
No 48
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=35.17 E-value=68 Score=39.67 Aligned_cols=13 Identities=31% Similarity=0.054 Sum_probs=7.8
Q ss_pred CceEEEeeccccC
Q 047201 188 ERFVVLSYNILAD 200 (772)
Q Consensus 188 ~~fRVMSYNILAd 200 (772)
.+++.-+.|+.+.
T Consensus 367 tk~~~p~lnW~al 379 (830)
T KOG1923|consen 367 TKTKSPSLNWLAL 379 (830)
T ss_pred ccccCCCcccccc
Confidence 4566666676653
No 49
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=29.41 E-value=33 Score=37.59 Aligned_cols=12 Identities=25% Similarity=0.399 Sum_probs=9.4
Q ss_pred CCCCCchhhhhe
Q 047201 752 KKWGSDHIALAS 763 (772)
Q Consensus 752 ~~~pSDHiaL~a 763 (772)
.+..|||++++-
T Consensus 257 ~~~aSDH~PV~f 268 (271)
T PRK15251 257 SQLASDHFPVNF 268 (271)
T ss_pred cccccCcccccc
Confidence 566899999863
No 50
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.04 E-value=1e+02 Score=36.25 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=14.2
Q ss_pred ecCCcccccccccccccccCCC
Q 047201 87 VSGDSHISSVSNSNRGVRQGNY 108 (772)
Q Consensus 87 ~~gd~h~~~v~~~n~~~r~~~~ 108 (772)
+.-+.|-+--|++|+|++|-..
T Consensus 367 n~p~~~~y~~r~~~~gf~rp~s 388 (483)
T KOG2236|consen 367 NQPAPQMYRGRDQNRGFKRPRS 388 (483)
T ss_pred cCCcccccCCcccccCCCCccc
Confidence 3345566667788888875544
No 51
>PRK09752 adhesin; Provisional
Probab=26.54 E-value=67 Score=41.58 Aligned_cols=11 Identities=9% Similarity=0.410 Sum_probs=5.2
Q ss_pred CCCCCC---CCCCC
Q 047201 142 RNPQFR---RPRPP 152 (772)
Q Consensus 142 ~~~~~~---~p~~p 152 (772)
|.|.|+ ||+.+
T Consensus 946 ptP~y~PvlRPEvG 959 (1250)
T PRK09752 946 PTPAYQPVLNAKVG 959 (1250)
T ss_pred CCCccccccccccc
Confidence 344454 55544
No 52
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=25.68 E-value=1e+02 Score=33.27 Aligned_cols=53 Identities=11% Similarity=0.362 Sum_probs=34.9
Q ss_pred CCCeEEEEEEecCCCCCC---h-HhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCC
Q 047201 329 HSKKVAICNIHVLFNPKR---G-EIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNC 381 (772)
Q Consensus 329 ~gk~LvVaNTHL~~nPk~---~-dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNS 381 (772)
.++.++|+=+||.+.... + .+=..|-..+.+.+.++...++...+|+.||+=-
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH 75 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKH 75 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 356899999999872111 0 1111255666677776666566778999999863
No 53
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=24.35 E-value=47 Score=32.22 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=7.6
Q ss_pred cceeEEEecCCce
Q 047201 718 GTVDYILRSEGLQ 730 (772)
Q Consensus 718 gtiDYI~ys~~L~ 730 (772)
..|||||++..+.
T Consensus 219 ~~iD~i~~s~~~~ 231 (249)
T PF03372_consen 219 SRIDYIFVSSDLR 231 (249)
T ss_dssp B--EEEEEEEHEE
T ss_pred ccEEEEEEECccc
Confidence 4999999963333
No 54
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=23.96 E-value=2e+02 Score=32.94 Aligned_cols=21 Identities=10% Similarity=-0.029 Sum_probs=11.6
Q ss_pred CCCCCCCCC--CCCCCCCccccc
Q 047201 141 NRNPQFRRP--RPPFDQNQAVQS 161 (772)
Q Consensus 141 ~~~~~~~~p--~~pf~~~~~f~~ 161 (772)
||.+++..| +-+|..|.|.+.
T Consensus 275 pp~~~qq~p~pp~~~ppRP~m~l 297 (498)
T KOG4849|consen 275 PPQQIQQQPQPPMGQPPRPMMQL 297 (498)
T ss_pred CchhhccCCCCCCCCCCCccccc
Confidence 445556644 445666765554
No 55
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=22.79 E-value=1.1e+02 Score=32.26 Aligned_cols=11 Identities=45% Similarity=0.576 Sum_probs=7.5
Q ss_pred cCCCCCCCCCC
Q 047201 64 HRGGRSHRRGF 74 (772)
Q Consensus 64 ~~~~~~~~rg~ 74 (772)
-||++|.+||+
T Consensus 3 gRGggrg~~~~ 13 (233)
T PF11705_consen 3 GRGGGRGGRGG 13 (233)
T ss_pred CCCCCCCCCCC
Confidence 56777666666
No 56
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=21.62 E-value=83 Score=34.11 Aligned_cols=50 Identities=26% Similarity=0.128 Sum_probs=27.7
Q ss_pred ccCCCCcceeEEEec-CCceeee----ccCCCCcccccCCCCCCCCCCCCchhhhhee
Q 047201 712 YNRRFKGTVDYILRS-EGLQTVR----VLAPIPKHAMQWTPGYPTKKWGSDHIALASE 764 (772)
Q Consensus 712 yt~~F~gtiDYI~ys-~~L~~~~----vL~~~~~~~l~~~~glP~~~~pSDHiaL~ae 764 (772)
|...-..-||||+++ +..++.. ++.+++.. +. ... =....+|||.++++.
T Consensus 228 ~~~~~~~~lDyvl~~~~~~~p~~~~~~~~~~~~~~-~~-~~~-~~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 228 YPKEEPEYLDYIFVSKSHAQPPVWQNKVLDPKSVT-SW-FKK-YTYDDFSDHYPVYGF 282 (283)
T ss_pred cCCCCcceEEEEEEECCCCCCccccceEEeccccc-cc-ccc-ccccccccccceeee
Confidence 333445689999998 6555433 22333210 00 000 134569999999864
No 57
>KOG4761 consensus Proteasome formation inhibitor PI31 [Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=3.4e+02 Score=29.68 Aligned_cols=14 Identities=21% Similarity=-0.005 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCCC
Q 047201 65 RGGRSHRRGFSDRP 78 (772)
Q Consensus 65 ~~~~~~~rg~s~r~ 78 (772)
|++..+|++++.-|
T Consensus 176 rip~~pr~~gn~gp 189 (266)
T KOG4761|consen 176 RIPGTPRVAGNIGP 189 (266)
T ss_pred cCCCCCCcCCCcCc
Confidence 44556666654443
No 58
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=21.19 E-value=48 Score=44.59 Aligned_cols=25 Identities=16% Similarity=0.145 Sum_probs=14.4
Q ss_pred CCCCCCCCCCC------CCCCcccccCCCCCC
Q 047201 142 RNPQFRRPRPP------FDQNQAVQSRPRPRP 167 (772)
Q Consensus 142 ~~~~~~~p~~p------f~~~~~f~~~~~~~p 167 (772)
|.|.|| |+.| .-.+.||...+.+|-
T Consensus 1723 ~~P~YR-PEVgsY~an~~aA~~lfl~TLHDR~ 1753 (2039)
T PRK15319 1723 VAPQYR-ADIGAYMGNQWMARNLQMQTLYDRE 1753 (2039)
T ss_pred Cccccc-CchhhhHHHHHHHHhhhcccHHHcC
Confidence 357775 5444 234667777666554
No 59
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=21.02 E-value=28 Score=38.42 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=27.2
Q ss_pred eeEEEec-CCceeeeccCCCCcc--cccCCCCCCCCCCCCchhhhheeE
Q 047201 720 VDYILRS-EGLQTVRVLAPIPKH--AMQWTPGYPTKKWGSDHIALASEV 765 (772)
Q Consensus 720 iDYI~ys-~~L~~~~vL~~~~~~--~l~~~~glP~~~~pSDHiaL~aef 765 (772)
+|-||+- + .-++-+.++.-+ -++|+.||| .+||||.+|+|-|
T Consensus 303 fDRi~~r~~--~~~G~~~~~~l~l~g~~kiRgc~--~fPSDHwgll~Tl 347 (349)
T KOG2756|consen 303 FDRIFFRAA--AEEGHIIPRSLDLLGLEKLRGCG--RFPSDHWGLLCTL 347 (349)
T ss_pred HHHHhhhhh--hhcCCcCccccchhhhhhhccCC--CCCcccceeeeec
Confidence 6888884 2 112333333333 356888965 6999999999876
No 60
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=20.37 E-value=2.5e+02 Score=29.67 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=32.4
Q ss_pred CCeEEEEEEecCCCCC----ChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCC
Q 047201 330 SKKVAICNIHVLFNPK----RGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNC 381 (772)
Q Consensus 330 gk~LvVaNTHL~~nPk----~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNS 381 (772)
++.++|+=+||..... +-.+-..|....++++.++.+..+.--||++||+-.
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h 70 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKH 70 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCcccc
Confidence 4578899999986211 001222355566777766655444456999999864
No 61
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=20.12 E-value=1.1e+02 Score=29.97 Aligned_cols=49 Identities=14% Similarity=-0.003 Sum_probs=25.0
Q ss_pred EEEEEecCCCCCChH-hHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCC
Q 047201 334 AICNIHVLFNPKRGE-IKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCT 382 (772)
Q Consensus 334 vVaNTHL~~nPk~~d-IRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNSt 382 (772)
+|+-+||........ .|+.+-..+.+.++++.+..+.--||++||+=..
T Consensus 2 ~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~ 51 (156)
T cd08165 2 FLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDE 51 (156)
T ss_pred ccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 567789854322221 1333333344344443332334459999998543
Done!