Query 047201
Match_columns 772
No_of_seqs 283 out of 1554
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 15:13:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047201.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047201hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ngq_A CCR4-NOT transcription 100.0 8E-61 2.7E-65 522.9 25.5 221 172-397 13-272 (398)
2 4b8c_D Glucose-repressible alc 100.0 1.5E-44 5.1E-49 418.0 3.8 190 188-395 393-620 (727)
3 3l1w_A Uncharacterized protein 99.9 1E-24 3.4E-29 216.6 20.8 172 190-394 1-182 (257)
4 3g6s_A Putative endonuclease/e 99.9 1.8E-24 6.2E-29 216.3 19.2 177 188-395 2-189 (267)
5 3mpr_A Putative endonuclease/e 99.9 8E-25 2.7E-29 224.8 16.8 182 187-395 4-195 (298)
6 3teb_A Endonuclease/exonucleas 99.9 3.8E-22 1.3E-26 197.3 16.7 165 188-394 2-194 (266)
7 4f1h_A Tyrosyl-DNA phosphodies 99.9 1.6E-21 5.5E-26 185.6 17.9 159 188-386 2-160 (250)
8 4gz1_A Tyrosyl-DNA phosphodies 99.9 1.2E-21 4.3E-26 190.1 16.4 163 187-389 7-169 (256)
9 1zwx_A SMCL, sphingomyelinase- 99.9 3.7E-21 1.3E-25 195.1 15.7 176 188-394 9-211 (301)
10 4fva_A 5'-tyrosyl-DNA phosphod 99.9 1.5E-20 5.2E-25 182.9 18.9 160 187-385 11-172 (256)
11 3i41_A Beta-hemolysin; beta to 99.8 1.3E-20 4.3E-25 196.8 17.5 180 186-394 26-230 (317)
12 4gew_A 5'-tyrosyl-DNA phosphod 99.8 6.5E-20 2.2E-24 196.6 19.2 161 186-385 116-278 (362)
13 2ddr_A Sphingomyelin phosphodi 99.8 1.9E-19 6.6E-24 182.6 18.1 176 187-393 7-216 (306)
14 2jc4_A Exodeoxyribonuclease II 99.8 9E-18 3.1E-22 165.0 20.4 147 190-385 1-153 (256)
15 1ako_A Exonuclease III; AP-end 99.8 2.8E-18 9.6E-23 169.7 13.9 153 190-387 1-160 (268)
16 2a40_B Deoxyribonuclease-1; WA 99.7 2.1E-17 7E-22 166.6 13.7 163 190-390 1-183 (260)
17 2jc5_A Exodeoxyribonuclease; h 99.7 6.5E-17 2.2E-21 159.1 13.7 148 190-385 2-156 (259)
18 1vyb_A ORF2 contains A reverse 99.7 1.8E-16 6.1E-21 153.8 13.8 145 188-385 6-152 (238)
19 2voa_A AF_EXO, XTHA, exodeoxyr 99.7 7.5E-16 2.6E-20 152.1 16.2 146 190-385 2-153 (257)
20 2o3h_A DNA-(apurinic or apyrim 99.7 8.1E-16 2.8E-20 155.1 14.2 152 187-385 26-184 (285)
21 3g91_A MTH0212, exodeoxyribonu 99.6 1.7E-15 5.9E-20 151.8 15.8 152 188-385 2-158 (265)
22 1hd7_A DNA-(apurinic or apyrim 99.6 3E-15 1E-19 155.6 15.4 152 187-385 59-217 (318)
23 1wdu_A TRAS1 ORF2P; four-layer 99.6 2.1E-14 7.1E-19 142.6 14.8 144 187-384 17-160 (245)
24 2j63_A AP-endonuclease; base e 99.5 3.9E-14 1.3E-18 157.8 15.2 165 187-385 147-362 (467)
25 2imq_X Salivary nitrophorin; f 99.4 3.9E-14 1.3E-18 147.2 5.5 168 188-394 7-190 (282)
26 2f1n_A CDT B, cytolethal diste 99.4 4E-13 1.4E-17 139.7 5.8 157 188-392 14-199 (262)
27 1sr4_B CDT B, cytolethal diste 99.3 3.7E-12 1.3E-16 132.8 10.2 163 188-393 3-191 (261)
28 2ei9_A Non-LTR retrotransposon 99.2 6.9E-11 2.3E-15 119.7 13.1 126 189-383 7-132 (240)
29 1i9z_A Synaptojanin, phosphati 99.0 3.4E-09 1.1E-13 114.3 15.2 167 188-395 25-227 (347)
30 2xsw_A 72 kDa inositol polypho 98.7 2.4E-08 8.2E-13 108.1 10.0 162 188-385 26-211 (357)
31 4a9c_A Phosphatidylinositol-3, 98.1 5E-05 1.7E-09 81.3 15.3 144 235-396 46-212 (316)
32 3mtc_A Type II inositol-1,4,5- 98.0 3E-05 1E-09 82.9 12.3 168 189-395 9-211 (313)
33 4f1h_A Tyrosyl-DNA phosphodies 97.1 0.00015 5.2E-09 68.5 1.7 50 715-766 200-249 (250)
34 4gz1_A Tyrosyl-DNA phosphodies 97.1 0.0002 7E-09 69.0 2.6 52 710-768 201-255 (256)
35 4fva_A 5'-tyrosyl-DNA phosphod 96.7 0.001 3.4E-08 64.3 3.9 42 717-766 212-255 (256)
36 4gew_A 5'-tyrosyl-DNA phosphod 95.8 0.0047 1.6E-07 66.2 3.7 42 717-766 318-361 (362)
37 2jc5_A Exodeoxyribonuclease; h 94.0 0.024 8.2E-07 55.2 2.9 37 718-769 218-258 (259)
38 3teb_A Endonuclease/exonucleas 93.9 0.025 8.7E-07 55.3 2.7 41 718-767 226-266 (266)
39 1zwx_A SMCL, sphingomyelinase- 93.6 0.019 6.6E-07 57.7 1.4 55 712-767 239-300 (301)
40 3g6s_A Putative endonuclease/e 92.9 0.079 2.7E-06 52.4 4.5 53 707-769 207-262 (267)
41 2voa_A AF_EXO, XTHA, exodeoxyr 92.4 0.02 6.7E-07 56.1 -0.6 41 716-767 213-257 (257)
42 2jc4_A Exodeoxyribonuclease II 92.2 0.019 6.5E-07 55.8 -1.0 40 717-767 213-256 (256)
43 3l1w_A Uncharacterized protein 92.2 0.088 3E-06 51.6 3.8 42 718-769 212-253 (257)
44 2ddr_A Sphingomyelin phosphodi 91.2 0.062 2.1E-06 54.0 1.5 52 716-768 248-306 (306)
45 1vyb_A ORF2 contains A reverse 90.4 0.12 4.3E-06 49.3 2.7 59 686-766 176-238 (238)
46 1wdu_A TRAS1 ORF2P; four-layer 89.4 0.19 6.3E-06 49.4 3.1 48 706-768 191-244 (245)
47 1ako_A Exonuclease III; AP-end 89.1 0.12 4.2E-06 50.4 1.6 39 717-766 225-267 (268)
48 3g91_A MTH0212, exodeoxyribonu 88.9 0.27 9.3E-06 48.7 3.9 62 685-769 187-259 (265)
49 2o3h_A DNA-(apurinic or apyrim 88.5 0.21 7.2E-06 49.8 2.9 36 717-767 246-285 (285)
50 2j63_A AP-endonuclease; base e 88.5 0.19 6.4E-06 56.2 2.7 64 686-767 396-466 (467)
51 3mpr_A Putative endonuclease/e 87.8 0.36 1.2E-05 49.1 4.1 62 707-768 212-290 (298)
52 1hd7_A DNA-(apurinic or apyrim 85.7 0.35 1.2E-05 49.9 2.6 36 717-767 279-318 (318)
53 3i41_A Beta-hemolysin; beta to 56.8 3 0.0001 43.0 0.9 54 710-763 255-314 (317)
54 2ei9_A Non-LTR retrotransposon 55.9 4.1 0.00014 40.8 1.7 48 707-770 175-222 (240)
55 3iot_A Maltose-binding protein 50.4 3.3 0.00011 44.5 0.0 21 85-105 349-370 (449)
56 1sr4_B CDT B, cytolethal diste 50.0 7.2 0.00025 40.7 2.5 44 718-763 213-257 (261)
57 2a40_B Deoxyribonuclease-1; WA 40.0 3.1 0.00011 41.3 -2.1 55 710-766 202-260 (260)
58 2imq_X Salivary nitrophorin; f 33.6 23 0.00079 36.3 3.1 36 720-768 242-281 (282)
59 2f1n_A CDT B, cytolethal diste 28.2 18 0.00063 37.8 1.3 39 717-762 218-258 (262)
No 1
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=100.00 E-value=8e-61 Score=522.94 Aligned_cols=221 Identities=31% Similarity=0.566 Sum_probs=175.2
Q ss_pred CCcccccccCCCC-CCCCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecc--h
Q 047201 172 DYRNWEHSKASLP-PYSERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR--F 248 (772)
Q Consensus 172 ~~R~W~~~~~~~~-~~~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~--f 248 (772)
..|.|+.+..... .....||||||||+++.+++ +.+|.+||.+.++|.+|++.|+++|..++|||||||||+. +
T Consensus 13 ~~R~wi~~~~~~~~~~~~~~~V~syNIl~d~~~~---~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~~q~ 89 (398)
T 3ngq_A 13 PPRPWITLKERDQILPSASFTVMCYNVLCDKYAT---RQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQY 89 (398)
T ss_dssp CCCCEEECSCCC--CCCEEEEEEEEECCCGGGCC---TTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHH
T ss_pred CCCcceECCCCCCCCCCCCEEEEEEccCcCcCCc---cccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccHHHH
Confidence 4799998865332 12358999999999998875 5899999999999999999999999999999999999986 4
Q ss_pred -hhHHHHHHhCCceEEEecCCC---------CCceeEEEEEccCcceeEEeeeeeccCC------C---------CCCce
Q 047201 249 -QDLEVELKFRGYTGIWKMRTG---------NAIDGCAIFWRASRFKLLYEEGIEFNKL------G---------LRDNV 303 (772)
Q Consensus 249 -~dL~~~L~~~GY~gvf~~Rtg---------~~~dG~AIFyRrSRF~LL~~e~I~fs~l------g---------lrdnV 303 (772)
+++.+.|..+||.++|..++. .+.+|||||||++||++++...|+|++. + -++|+
T Consensus 90 ~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~~~~~~Ri~t~~nv 169 (398)
T 3ngq_A 90 FTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNI 169 (398)
T ss_dssp HHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTCCCE
T ss_pred HHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccchhhhcceeeccce
Confidence 457888989999999875422 3579999999999999999999999752 1 24788
Q ss_pred eEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHhhccC-----------CCCC
Q 047201 304 AQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTW-----------NDAP 372 (772)
Q Consensus 304 aqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~-----------~~vP 372 (772)
+++++|+...... . ....+.....++.|+|+||||+|+|.+.++|+.|++.|+++|+++.+.+ .+.|
T Consensus 170 al~~~L~~~~~~~-~-~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~P 247 (398)
T 3ngq_A 170 GVAVVLEVHKELF-G-AGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIP 247 (398)
T ss_dssp EEEEEEEECGGGC-------------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC-------------CCC
T ss_pred eEEEEEEEccccc-c-cccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCc
Confidence 8888888642000 0 0000001124678999999999999999999999999999999886432 3589
Q ss_pred EEEEcCCCCCCCcHHHHHHHhCCCC
Q 047201 373 VVLCGDFNCTPKSPLYNFILEQKLD 397 (772)
Q Consensus 373 VILcGDFNStPdS~vYr~Ls~~~Ld 397 (772)
||||||||++|+|++|++|++|.++
T Consensus 248 vIl~GDFNs~P~s~vy~~L~~G~v~ 272 (398)
T 3ngq_A 248 LVLCADLNSLPDSGVVEYLSNGGVA 272 (398)
T ss_dssp EEEEEECSCCTTSHHHHHHHHTEEE
T ss_pred eEEEeeCCCCCCCHHHHHHhcCCCC
Confidence 9999999999999999999988654
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.5e-44 Score=418.00 Aligned_cols=190 Identities=31% Similarity=0.610 Sum_probs=58.1
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecc--hhh-HHHHHHhCCceEEE
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR--FQD-LEVELKFRGYTGIW 264 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~--f~d-L~~~L~~~GY~gvf 264 (772)
..+++|||||+++.++. +.+|.+||.+.++|.+|+..|+++|..++|||||||||+. +.+ +.+.|.++||.++|
T Consensus 393 ~~~~~ls~Nil~~~~~~---~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~ 469 (727)
T 4b8c_D 393 RTFTVLSYNTLCQHYAT---PKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIF 469 (727)
T ss_dssp ---------CCCGGGCC---TTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC
T ss_pred cceeeeeccccccccCc---cccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEE
Confidence 46899999999988765 4789999999999999999999999999999999999986 433 46778889999988
Q ss_pred ecCC---------CCCceeEEEEEccCcceeEEeeeeeccCCCC-----------------CCceeEEEEEEEecccccc
Q 047201 265 KMRT---------GNAIDGCAIFWRASRFKLLYEEGIEFNKLGL-----------------RDNVAQICVLELLSQNFTE 318 (772)
Q Consensus 265 ~~Rt---------g~~~dG~AIFyRrSRF~LL~~e~I~fs~lgl-----------------rdnVaqi~vLe~Lr~~~~~ 318 (772)
..+. +...+|||||||++||++++...++|++... +++++.++.++.
T Consensus 470 ~~~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~l~~------- 542 (727)
T 4b8c_D 470 HAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQH------- 542 (727)
T ss_dssp ----------------CCCCEEEC--------------------------------------------------------
T ss_pred eccCCcccccccCCCCcccEEEEEEcccceEeeeeEEeechhhhhchhhcccHHHHhhcccCCcEEEEEEEee-------
Confidence 5332 4568999999999999999999998864311 112222222221
Q ss_pred cccCCCCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHhhcc---------CCCCCEEEEcCCCCCCCcHHHH
Q 047201 319 NSAALPTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSKT---------WNDAPVVLCGDFNCTPKSPLYN 389 (772)
Q Consensus 319 ~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~---------~~~vPVILcGDFNStPdS~vYr 389 (772)
...++.|+|+||||+|+|.++++|+.|+..|+++++++.+. ..+.|||||||||+.|++.+|+
T Consensus 543 --------~~~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~~~~ 614 (727)
T 4b8c_D 543 --------IPSGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYE 614 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------cCCCceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCCcceE
Confidence 23467899999999999988999999999999999887542 2468999999999999999999
Q ss_pred HHHhCC
Q 047201 390 FILEQK 395 (772)
Q Consensus 390 ~Ls~~~ 395 (772)
+|+.+.
T Consensus 615 ~l~~~~ 620 (727)
T 4b8c_D 615 LINTGR 620 (727)
T ss_dssp ------
T ss_pred eeecCC
Confidence 987653
No 3
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.93 E-value=1e-24 Score=216.56 Aligned_cols=172 Identities=18% Similarity=0.352 Sum_probs=129.4
Q ss_pred eEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecch--hhHHHHHHhCCceEEEecC
Q 047201 190 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRF--QDLEVELKFRGYTGIWKMR 267 (772)
Q Consensus 190 fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f--~dL~~~L~~~GY~gvf~~R 267 (772)
||||||||+.... +.....|..|++.|++.|..++|||||||||+.. .+|.. ..||..+...+
T Consensus 1 lrv~t~Ni~~~~~------------~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~---~l~y~~~~~~~ 65 (257)
T 3l1w_A 1 MKIATYNVRVDTE------------YDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKA---YTTFTCLSAER 65 (257)
T ss_dssp CEEEEEECCCCCG------------GGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHH---HSSSEEEEEES
T ss_pred CEEEEEEeccCCC------------CccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHh---cCCCcEEEecc
Confidence 6999999997542 1234679999999999999999999999999862 33433 35897766544
Q ss_pred C-CCCceeEEEEEccCcceeEEeeeeeccCCC------CCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEec
Q 047201 268 T-GNAIDGCAIFWRASRFKLLYEEGIEFNKLG------LRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHV 340 (772)
Q Consensus 268 t-g~~~dG~AIFyRrSRF~LL~~e~I~fs~lg------lrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL 340 (772)
. +...+|+|||||++||++++...++++... +.....+.+++..++ ...+++.|+|+||||
T Consensus 66 ~~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~------------~~~~g~~~~v~~~Hl 133 (257)
T 3l1w_A 66 EGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFK------------ETTQNTPFLVINVHL 133 (257)
T ss_dssp SSSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEE------------ETTCSSCEEEEEEEC
T ss_pred cCCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccccccccceeEEEEEE------------EcCCCCEEEEEEeCC
Confidence 3 256789999999999999999999886421 111123333333331 012467899999999
Q ss_pred CCCCCChHhHHHHHHHHHHHHH-HhhccCCCCCEEEEcCCCCCCCcHHHHHHHhC
Q 047201 341 LFNPKRGEIKLGQVRTLLEKAH-AVSKTWNDAPVVLCGDFNCTPKSPLYNFILEQ 394 (772)
Q Consensus 341 ~~nPk~~dIRL~Qa~iLL~~L~-aLsk~~~~vPVILcGDFNStPdS~vYr~Ls~~ 394 (772)
.+. ....|..|++.|+++++ .+.. + |+|||||||+.|++..|+.|.++
T Consensus 134 ~~~--~~~~r~~q~~~l~~~i~~~~~~---~-pvil~GDfN~~~~~~~~~~l~~~ 182 (257)
T 3l1w_A 134 DHI--SAHARLAGMTVILEELHDKIAQ---Y-PTLLMGDFNAESGEEVHQLVQKK 182 (257)
T ss_dssp CSS--CHHHHHHHHHHHHHHTHHHHHH---S-CEEEEEECCCCTTSHHHHHHTTT
T ss_pred CCC--CHHHHHHHHHHHHHHHHHHcCC---C-CEEEEeeCCCCCCcHHHHHhhhh
Confidence 873 56789999999999988 4543 3 99999999999999999988764
No 4
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.92 E-value=1.8e-24 Score=216.31 Aligned_cols=177 Identities=24% Similarity=0.312 Sum_probs=133.2
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecc--hhhHHHHHHhCCceEEEe
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR--FQDLEVELKFRGYTGIWK 265 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~--f~dL~~~L~~~GY~gvf~ 265 (772)
+.||||||||+..... .....|..|++.|++.|..++|||||||||+. ..+|...| .||..+..
T Consensus 2 ~~l~v~t~Ni~~~~~~------------~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l--~~y~~~~~ 67 (267)
T 3g6s_A 2 TDVRWATFNIRYDNPQ------------DSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQDLRAGL--PEYDGIGV 67 (267)
T ss_dssp EEEEEEEEECCCCCGG------------GGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHC--TTEEEECC
T ss_pred CcEEEEEEEeccCCCC------------ccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHhc--cCCcEEEe
Confidence 4799999999975421 23567999999999999999999999999986 23444444 47776554
Q ss_pred cCCC--CCceeEEEEEccCcceeEEeeeeeccCCC-------CCCceeEEEEEEEecccccccccCCCCccCCCCeEEEE
Q 047201 266 MRTG--NAIDGCAIFWRASRFKLLYEEGIEFNKLG-------LRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAIC 336 (772)
Q Consensus 266 ~Rtg--~~~dG~AIFyRrSRF~LL~~e~I~fs~lg-------lrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVa 336 (772)
.+.. ...+|+|||||++||++++...++|+... +.....+.+++..++ ...+++.|+|+
T Consensus 68 ~~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~------------~~~~~~~~~v~ 135 (267)
T 3g6s_A 68 GRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFK------------DKATGKIFMAV 135 (267)
T ss_dssp CTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEE------------ETTTCCEEEEE
T ss_pred cCCCCCcCCceeEEEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEE------------EcCCCCEEEEE
Confidence 4321 34567999999999999999998886431 211223444443331 01346799999
Q ss_pred EEecCCCCCChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHHHHHHHhCC
Q 047201 337 NIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPLYNFILEQK 395 (772)
Q Consensus 337 NTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~vYr~Ls~~~ 395 (772)
||||.+ .....|..|++.|++.++++.. +.|+|||||||+.|.+..|+.|.+.+
T Consensus 136 ~~Hl~~--~~~~~R~~q~~~l~~~l~~~~~---~~pvIl~GDfN~~~~~~~~~~l~~~~ 189 (267)
T 3g6s_A 136 NTHFDH--VGEEARRQSALLIIRKIKEIVG---ERPAVVTGDFNVTDASDAYETITTNE 189 (267)
T ss_dssp EEECCS--SCHHHHHHHHHHHHHHHHHHTT---TSCEEEEEECSSCTTSHHHHHHHSSS
T ss_pred EeCCCC--CCHHHHHHHHHHHHHHHHHhcC---CCCEEEEeECCCCCCCHHHHHhhcCC
Confidence 999987 4567899999999999988753 68999999999999999999998754
No 5
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=8e-25 Score=224.80 Aligned_cols=182 Identities=20% Similarity=0.279 Sum_probs=134.1
Q ss_pred CCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecc--hhhHHHHHHhCCceEEE
Q 047201 187 SERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR--FQDLEVELKFRGYTGIW 264 (772)
Q Consensus 187 ~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~--f~dL~~~L~~~GY~gvf 264 (772)
+..||||||||+.....+ ......|..|++.|++.|..++|||||||||+. ..+|...|. +|..+.
T Consensus 4 ~~~lrV~t~Ni~~~~~~~----------~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l~--~y~~~~ 71 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSD----------SARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKDMKEALP--GYDYIG 71 (298)
T ss_dssp CEEEEEEEEECCCCCHHH----------HHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHST--TEEEEC
T ss_pred CCcEEEEEEEeccCCCCC----------cccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHhCC--CCcEEE
Confidence 468999999998643211 012467999999999999999999999999985 344554442 566554
Q ss_pred ecCC--CCCceeEEEEEccCcceeEEeeeeeccCC------CCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEE
Q 047201 265 KMRT--GNAIDGCAIFWRASRFKLLYEEGIEFNKL------GLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAIC 336 (772)
Q Consensus 265 ~~Rt--g~~~dG~AIFyRrSRF~LL~~e~I~fs~l------glrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVa 336 (772)
..+. ....+++|||||++||++++...++++.. ++.....+.+++..++ ...+++.|+|+
T Consensus 72 ~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~------------~~~~g~~~~v~ 139 (298)
T 3mpr_A 72 VGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFK------------CKDTGFEFLFF 139 (298)
T ss_dssp CCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEE------------ETTTCCEEEEE
T ss_pred EecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccccccCceeEEEEEE------------EcCCCCEEEEE
Confidence 3332 13456799999999999999999888642 2222233444444432 01356799999
Q ss_pred EEecCCCCCChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHHHHHHHhCC
Q 047201 337 NIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPLYNFILEQK 395 (772)
Q Consensus 337 NTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~vYr~Ls~~~ 395 (772)
||||.+ .....|..|++.|++.++++... .+.|||||||||+.|.+..|+.|.+.+
T Consensus 140 ~~Hl~~--~~~~~R~~q~~~l~~~i~~~~~~-~~~pvIl~GDfN~~~~~~~~~~l~~~g 195 (298)
T 3mpr_A 140 NLHMDH--IGKKARVESAFLVQEKMKELGRG-KNLPAILTGDFNVDQTHQSYDAFVSKG 195 (298)
T ss_dssp EEECCS--SCHHHHHHHHHHHHHHHHHTTTT-SCCCEEEEEECSSCTTSHHHHHHHTTS
T ss_pred EecCCC--CCHHHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCHHHHHHhcCC
Confidence 999986 46778999999999999886521 368999999999999999999998764
No 6
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.88 E-value=3.8e-22 Score=197.25 Aligned_cols=165 Identities=19% Similarity=0.236 Sum_probs=121.0
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchh----------------hH
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQ----------------DL 251 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~----------------dL 251 (772)
+.||||||||+... ..++..|.+.|++.|...+|||||||||+... .+
T Consensus 2 ~~l~v~t~Ni~~~~----------------~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~ 65 (266)
T 3teb_A 2 NAMKILTVNVHAWL----------------EENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVL 65 (266)
T ss_dssp -CEEEEEEECCTTC----------------STTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHH
T ss_pred CceEEEEEeccccc----------------CcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHH
Confidence 57999999998532 12467888999999999999999999996411 15
Q ss_pred HHHHHhCC---ceEEEe---cCCCCCceeEEEEEccCcceeEEeeeeeccCC----CCCCceeEEEEEEEeccccccccc
Q 047201 252 EVELKFRG---YTGIWK---MRTGNAIDGCAIFWRASRFKLLYEEGIEFNKL----GLRDNVAQICVLELLSQNFTENSA 321 (772)
Q Consensus 252 ~~~L~~~G---Y~gvf~---~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~l----glrdnVaqi~vLe~Lr~~~~~~~~ 321 (772)
.+.|.+.+ |..+|. ........|+||| +||+++....+.++.. ++..+ .++.++..
T Consensus 66 ~~~l~~~~~~~y~~~~~~~~~~~~~~~~g~ail---sr~~~~~~~~~~~~~~~~~~~~~~r--~~~~~~~~--------- 131 (266)
T 3teb_A 66 LETLQKYTDTDYYLHWSNSHIGFGKYNEGVAVI---TRHKIKAEDEFYCTFAQSVRTISAR--RIVSITIN--------- 131 (266)
T ss_dssp HHHHTTTCCSCCEEEEEEEEECSTTEEEEEEEE---ESSCCSEEEEEECSSCCCTTCTTCC--EEEEEEEE---------
T ss_pred HHHHHHhCCCCeEEEEeccccCccccCCeEEEE---ECceecCceeEEeCCCCCCCCcccc--eEEEEEEE---------
Confidence 66776655 876542 1223456799999 8899999988888753 22222 12222221
Q ss_pred CCCCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCC--CcHHHHHHHhC
Q 047201 322 ALPTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTP--KSPLYNFILEQ 394 (772)
Q Consensus 322 ~Lp~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStP--dS~vYr~Ls~~ 394 (772)
.+++.|+|+||||.+.+...+.|..|++.|++++.+ +.|+|||||||+.| ++..|+.|.+.
T Consensus 132 ------~~~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~------~~~~il~GDfN~~~~~~~~~~~~l~~~ 194 (266)
T 3teb_A 132 ------YEGQDIEFYSCHMNLPNCETEDMGKNIQTILNRTQN------SNLKILMGDFNTDAIGNVAAYENILSQ 194 (266)
T ss_dssp ------ETTEEEEEEEEECCCTTCTTCCHHHHHHHHHTSSCS------CCEEEEEEECCCCTTTCHHHHHHHHTT
T ss_pred ------eCCeEEEEEEecCCCccCChHHHHHHHHHHHHHHhc------CCcEEEEeECCCCCCCCCcHHHhhccc
Confidence 246789999999998765667799999888766543 57999999999999 99999998764
No 7
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.87 E-value=1.6e-21 Score=185.57 Aligned_cols=159 Identities=20% Similarity=0.209 Sum_probs=115.0
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchhhHHHHHHhCCceEEEecC
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQDLEVELKFRGYTGIWKMR 267 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~dL~~~L~~~GY~gvf~~R 267 (772)
.+||||||||++.. ..+|..|++.|++.|+.++|||||||||+.. .+.......++...+..
T Consensus 2 ~~l~v~t~Ni~g~~----------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~-~~~~l~~~~~~~~~~~~- 63 (250)
T 4f1h_A 2 SKLSIISWNVDGLD----------------TLNLADRARGLCSYLALYTPDVVFLQELIPA-YVQYLKKRAVSYLFFEG- 63 (250)
T ss_dssp CCEEEEEEECCTTC----------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECHH-HHHHHHHHCTTEEEEES-
T ss_pred CeEEEEEEEeCCCC----------------CcCHHHHHHHHHHHHHHcCCCEEEEEeCCHH-HHHHHHHhccCceeecc-
Confidence 47999999997521 2358899999999999999999999999752 12222233455444433
Q ss_pred CCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCCh
Q 047201 268 TGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKRG 347 (772)
Q Consensus 268 tg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~ 347 (772)
.....|.++++++++++++....+.+...... ..++.+... .+++.|+|+||||.+.+...
T Consensus 64 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---------------~~~~~~~v~~~hl~~~~~~~ 124 (250)
T 4f1h_A 64 -SDDGYFTGIMLRKSRVKFLESEIICFPTTQMM---RNLLIAQVT---------------FSGQKLYLMTSHLESCKNQS 124 (250)
T ss_dssp -CSSSSEEEEEEETTTCEEEEEEEEECTTCSSC---CEEEEEEEE---------------ETTEEEEEEECBCCCSGGGH
T ss_pred -cccccCceeEEeeccccceecccccccCcccc---ceEEEEEEe---------------cCCcEEEEeccccccccccH
Confidence 23346778888999999999988877654221 122222221 25678999999999877777
Q ss_pred HhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcH
Q 047201 348 EIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSP 386 (772)
Q Consensus 348 dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~ 386 (772)
..|..|++.+++.+++.. .+.|||||||||+.|.+.
T Consensus 125 ~~r~~q~~~~~~~l~~~~---~~~pvIl~GDfN~~~~~~ 160 (250)
T 4f1h_A 125 QERTKQLRVVLQKIKEAP---EDAIVIFAGDTNLRDAEV 160 (250)
T ss_dssp HHHHHHHHHHHHHHHHSC---TTEEEEEEEECCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhcC---CCCCEEEEEecCCCCcch
Confidence 889999999988887643 467999999999887654
No 8
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.87 E-value=1.2e-21 Score=190.11 Aligned_cols=163 Identities=19% Similarity=0.170 Sum_probs=115.4
Q ss_pred CCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchhhHHHHHHhCCceEEEec
Q 047201 187 SERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQDLEVELKFRGYTGIWKM 266 (772)
Q Consensus 187 ~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~dL~~~L~~~GY~gvf~~ 266 (772)
...||||||||.+.. ..+|..|++.|++.|+.++|||||||||+.. ..+.|.+..+...+..
T Consensus 7 ~~~l~v~swNi~g~~----------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~--~~~~l~~~~~~~~~~~ 68 (256)
T 4gz1_A 7 SSTISFITWNIDGLD----------------GCNLPERARGVCSCLALYSPDVVFLQEVIPP--YCAYLKKRAASYTIIT 68 (256)
T ss_dssp GGEEEEEEEECCTTC----------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECHH--HHHHHHHHCTTEEEEE
T ss_pred CCcEEEEEEEcCCCc----------------CcCHHHHHHHHHHHHHHcCCCEEEEEcCCHH--HHHHHHhhccccceee
Confidence 358999999997532 2358899999999999999999999999752 1222322222222221
Q ss_pred CCCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCC
Q 047201 267 RTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKR 346 (772)
Q Consensus 267 Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~ 346 (772)
.+....|++++++++++.++......+..... .... +..... .+++.|+|+||||.+.+..
T Consensus 69 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~---------------~~~~~~~v~~~Hl~~~~~~ 129 (256)
T 4gz1_A 69 -GNEEGYFTAILLKKGRVKFKSQEIIPFPNTKM--MRNL-LCVNVS---------------LGGNEFCLMTSHLESTREH 129 (256)
T ss_dssp -SCSSSSEEEEEEETTTEEEEEEEEEECTTCSS--CCEE-EEEEEE---------------ETTEEEEEEECBCCCSGGG
T ss_pred -ccccCCceEEEEEeccccceecccccCCcccc--cceE-EEEEEE---------------eCCEEEEEEeecccccccc
Confidence 23446789999999999998877766654321 1111 222211 2467899999999987777
Q ss_pred hHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHHHH
Q 047201 347 GEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPLYN 389 (772)
Q Consensus 347 ~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~vYr 389 (772)
...|..|+..+++.+++.. .+.|||||||||+.|.+..+.
T Consensus 130 ~~~~~~q~~~~~~~l~~~~---~~~pvIl~GDfN~~~~~~~~~ 169 (256)
T 4gz1_A 130 SAERIRQLKTVLGKMQEAP---DSTTVIFAGDTNLRDQEVIKC 169 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSC---TTSEEEEEEECCCCHHHHHHH
T ss_pred hhhhhHHHHHHhhhhhhcc---CcceEEEeCccCCCcchhhhh
Confidence 7889999999988887653 468999999999988765543
No 9
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.86 E-value=3.7e-21 Score=195.15 Aligned_cols=176 Identities=16% Similarity=0.138 Sum_probs=120.4
Q ss_pred CceEEEeeccccCcccccccccccccCCccccch--HHHHHHHHHHhhcCCCcEEEEeeecch---hhHHHHHH-hCCce
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDW--EWRKRSILFELGLWSADIMCFQEVDRF---QDLEVELK-FRGYT 261 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdW--d~Rk~lIikEI~~~dPDIICLQEVD~f---~dL~~~L~-~~GY~ 261 (772)
..||||||||+.... .++ -.| +.|.+.|+++|...+|||||||||+.. ..|.+.|. .++|.
T Consensus 9 ~~lrv~t~Ni~~~~~------~~~-------~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~~ 75 (301)
T 1zwx_A 9 GNFKITSHNVYLFSR------NIY-------PNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPHQ 75 (301)
T ss_dssp CSCEEEEEEEEECCT------TTS-------TTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCEE
T ss_pred CceEEEEEECccCCc------ccc-------CCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCcc
Confidence 579999999997421 111 135 688999999999999999999999863 33444444 34554
Q ss_pred EEEecCC--------------CCCceeEEEEEccCcceeEEeeeeeccCCC-CCCceeEEEEEEEecccccccccCCCCc
Q 047201 262 GIWKMRT--------------GNAIDGCAIFWRASRFKLLYEEGIEFNKLG-LRDNVAQICVLELLSQNFTENSAALPTS 326 (772)
Q Consensus 262 gvf~~Rt--------------g~~~dG~AIFyRrSRF~LL~~e~I~fs~lg-lrdnVaqi~vLe~Lr~~~~~~~~~Lp~~ 326 (772)
..+..+. .....|+||| |||+++....+.|+... ......+.++...+.
T Consensus 76 ~~~~~~~~~~~~~~~g~~~~~~~~~~G~ail---Sr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~~~------------- 139 (301)
T 1zwx_A 76 TPVIGRSKHGWDKTEGNYSNFALEDGGVAVV---SQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIM------------- 139 (301)
T ss_dssp CCCTTSCSTTCSEEEC-----CCBCCCCEEE---ESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEE-------------
T ss_pred ccccCCccccccccccccccccccCCCEEEE---ecCCcccceEEEecCCCCcccccCCCeEEEEEE-------------
Confidence 3222110 1234799999 99999999888887421 110001112222221
Q ss_pred cCCCCeEEEEEEecCCCCC------ChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHHHHHHHhC
Q 047201 327 SAHSKKVAICNIHVLFNPK------RGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPLYNFILEQ 394 (772)
Q Consensus 327 ~t~gk~LvVaNTHL~~nPk------~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~vYr~Ls~~ 394 (772)
.+++.|.|+||||.+... ....|..|++.|++++++.. ...+.|+|||||||+.|.+..|+.|.+.
T Consensus 140 -~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~-~~~~~pvIl~GDfN~~~~~~~~~~l~~~ 211 (301)
T 1zwx_A 140 -KNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKN-IPKDEIIFIGGDLNVNYGTDEYHDMLKL 211 (301)
T ss_dssp -ETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHT-CCTTSEEEEEEECCCCTTSHHHHHHHHH
T ss_pred -ECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhC-CCCCCeEEEEeeCCCCCCcHHHHHHHHH
Confidence 145789999999987521 34679999999999888752 1245799999999999999999988753
No 10
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.85 E-value=1.5e-20 Score=182.93 Aligned_cols=160 Identities=19% Similarity=0.155 Sum_probs=114.0
Q ss_pred CCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecch--hhHHHHHHhCCceEEE
Q 047201 187 SERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRF--QDLEVELKFRGYTGIW 264 (772)
Q Consensus 187 ~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f--~dL~~~L~~~GY~gvf 264 (772)
+.+||||||||.+.. ..+|..|++.|++.|+.++|||||||||... ..+.. ..++...+
T Consensus 11 ~~~l~v~s~Ni~g~~----------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~---~~~~~~~~ 71 (256)
T 4fva_A 11 GFEVSVMSWNIDGLD----------------GRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDK---LQSLYKIY 71 (256)
T ss_dssp TCEEEEEEEECCTTC----------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHG---GGGTEEEE
T ss_pred CCEEEEEEEecCCCC----------------CcCHHHHHHHHHHHHHHcCCCEEEEEecChhHhHHHHH---hcCCceEe
Confidence 468999999997421 2358899999999999999999999999762 33332 23444444
Q ss_pred ecCCCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCC
Q 047201 265 KMRTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNP 344 (772)
Q Consensus 265 ~~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nP 344 (772)
.. ......|+||+++ +++++.....+.+...... . . ++.+... .+++.|+|+||||.+..
T Consensus 72 ~~-~~~~~~g~~il~~-~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~---------------~~g~~~~v~~~Hl~~~~ 131 (256)
T 4fva_A 72 YS-NKGCQYYTAILVS-KMFDVEKHDVIHFQNSGMY-R-T-LQILEGS---------------IGGLKVFLLNTHLESTR 131 (256)
T ss_dssp ES-STTSSSEEEEEEE-TTCEEEEEEEEECTTCSSC-C-E-EEEEEEE---------------ETTEEEEEEEEECCCSG
T ss_pred ec-CCCCCcceEEEEe-ecccceecccccCCCCccc-c-e-eEEEEEE---------------eCCeEEEEEEecCCCCC
Confidence 32 3445679999987 4678877777777654221 1 1 1222211 24678999999999866
Q ss_pred CChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCc
Q 047201 345 KRGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKS 385 (772)
Q Consensus 345 k~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS 385 (772)
.....|..|++.+++.+..+.....+.|||||||||..|.+
T Consensus 132 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~ 172 (256)
T 4fva_A 132 EHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEE 172 (256)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGG
T ss_pred cchHHHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcch
Confidence 66677899999888888776655667899999999987643
No 11
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.85 E-value=1.3e-20 Score=196.80 Aligned_cols=180 Identities=18% Similarity=0.166 Sum_probs=123.0
Q ss_pred CCCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecch---hhHHHHHH-hCCce
Q 047201 186 YSERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRF---QDLEVELK-FRGYT 261 (772)
Q Consensus 186 ~~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f---~dL~~~L~-~~GY~ 261 (772)
....||||||||+..... +. ....|..|.++|...|...+|||||||||+.. ..+.+.|. .++|.
T Consensus 26 ~~~~lrV~T~Ni~~~~~~------~~-----~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~ 94 (317)
T 3i41_A 26 DDTDLKLVSHNVYMLSTV------LY-----PNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQ 94 (317)
T ss_dssp --CCCCEEEEEEEECCTT------TS-----TTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEE
T ss_pred CCCceEEEEEecccCccc------cC-----CCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCcc
Confidence 346899999999975321 11 12368999999999998999999999999874 33445554 34554
Q ss_pred EEEecCCCC--------------CceeEEEEEccCcceeEEeeeeeccCC-CCCCceeEEEEEEEecccccccccCCCCc
Q 047201 262 GIWKMRTGN--------------AIDGCAIFWRASRFKLLYEEGIEFNKL-GLRDNVAQICVLELLSQNFTENSAALPTS 326 (772)
Q Consensus 262 gvf~~Rtg~--------------~~dG~AIFyRrSRF~LL~~e~I~fs~l-glrdnVaqi~vLe~Lr~~~~~~~~~Lp~~ 326 (772)
..+..+... ...|++|| |||+++....+.|... ++.....+.++...+.
T Consensus 95 ~~~~g~~~~~~~~~~~~y~~~~~~~~G~~il---Sr~Pi~~~~~~~~~~~~~~d~~~~r~~~~~~i~------------- 158 (317)
T 3i41_A 95 TPVLGRSQSGWDKTEGSYSSTVAEDGGVAIV---SKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIE------------- 158 (317)
T ss_dssp CCCTTSCSTTCSEEEESCCSSCSBCCCCEEE---ESSCEEEEEEEECSCCCSSGGGBCCEEEEEEEE-------------
T ss_pred cccCCccccCccCcccccccccccCCccEEE---eCCCCccceeEECCCCCCcccccCcceEEEEEE-------------
Confidence 222111100 11599999 9999999988888653 2211111111122111
Q ss_pred cCCCCeEEEEEEecCCCCC------ChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHHHHHHHhC
Q 047201 327 SAHSKKVAICNIHVLFNPK------RGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPLYNFILEQ 394 (772)
Q Consensus 327 ~t~gk~LvVaNTHL~~nPk------~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~vYr~Ls~~ 394 (772)
.+++.|.|+||||.+... ....|..|+..|++++++.. ...+.|||||||||+.|.+..|+.|.+.
T Consensus 159 -~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~-~~~~~pvIl~GDfN~~~~s~~~~~l~~~ 230 (317)
T 3i41_A 159 -KNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKN-IPKDETVYIGGDLNVNKGTPEFKDMLKN 230 (317)
T ss_dssp -ETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHT-CCTTSCEEEEEECCCCTTSHHHHHHHHH
T ss_pred -ECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhc-cCCCCeEEEEeECCCCCCCHHHHHHHHh
Confidence 246789999999998532 25679999999999998752 1246899999999999999999999863
No 12
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.83 E-value=6.5e-20 Score=196.64 Aligned_cols=161 Identities=19% Similarity=0.129 Sum_probs=114.7
Q ss_pred CCCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecc--hhhHHHHHHhCCceEE
Q 047201 186 YSERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDR--FQDLEVELKFRGYTGI 263 (772)
Q Consensus 186 ~~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~--f~dL~~~L~~~GY~gv 263 (772)
.+..||||||||.+.. ..+|..|++.|++.|+.++|||||||||.. +..|...+ .+|..+
T Consensus 116 ~~~~lkVlSWNI~Gl~----------------~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~~~l~~~~--~~y~~~ 177 (362)
T 4gew_A 116 KGFEVSVMSWNIDGLD----------------GRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQ--SLYKIY 177 (362)
T ss_dssp TTCEEEEEEEECCTTC----------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHGGG--GTEEEE
T ss_pred CCCeEEEEEEEeCCCC----------------CcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHhHHHHHhc--CCceEE
Confidence 3468999999997532 135788999999999999999999999975 23343322 356554
Q ss_pred EecCCCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCC
Q 047201 264 WKMRTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFN 343 (772)
Q Consensus 264 f~~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~n 343 (772)
+. ...+..|+|||+|+ +++++....+.+...... ....++.+. .+++.|+|+||||.+.
T Consensus 178 ~~--~~~~~~G~aIlsk~-~i~~~~~~~~~~~~~~~~-r~~l~~~i~-----------------~~g~~l~v~ntHL~s~ 236 (362)
T 4gew_A 178 YS--NKGCQYYTAILVSK-MFDVEKHDVIHFQNSGMY-RTLQILEGS-----------------IGGLKVFLLNTHLEST 236 (362)
T ss_dssp ES--STTSSSEEEEEEET-TEEEEEEEEEECTTCSSC-CEEEEEEEE-----------------ETTEEEEEEEEECCCS
T ss_pred eC--CCCCCceEEEEEec-cCccccccccCCCCCccc-ceEEEEEEE-----------------ECCEEEEEEEecCCcc
Confidence 43 23456899999874 577777666666543221 112222221 2467899999999986
Q ss_pred CCChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCc
Q 047201 344 PKRGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKS 385 (772)
Q Consensus 344 Pk~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS 385 (772)
......|..|++.+++.+..+....++.|||||||||..|.+
T Consensus 237 ~~~~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~ 278 (362)
T 4gew_A 237 REHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEE 278 (362)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGG
T ss_pred ccchhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcc
Confidence 666678999999999888776655567899999999987754
No 13
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.82 E-value=1.9e-19 Score=182.59 Aligned_cols=176 Identities=17% Similarity=0.163 Sum_probs=117.0
Q ss_pred CCceEEEeeccccCcccccccccccccCCccccch--HHHHHHHHHHhhcCCCcEEEEeeecchh---hHHHHHH-hCCc
Q 047201 187 SERFVVLSYNILADYLALSHRSKLYFHIPRHLLDW--EWRKRSILFELGLWSADIMCFQEVDRFQ---DLEVELK-FRGY 260 (772)
Q Consensus 187 ~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdW--d~Rk~lIikEI~~~dPDIICLQEVD~f~---dL~~~L~-~~GY 260 (772)
...||||||||+.... ..+ -.| +.|++.|...|...+|||||||||.... .+.+.|. .++|
T Consensus 7 ~~~lrv~t~Ni~~~~~------~~~-------~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~ 73 (306)
T 2ddr_A 7 NDTLKVMTHNVYMLST------NLY-------PNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPN 73 (306)
T ss_dssp CCEEEEEEEEEEECCT------TTC-------TTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCE
T ss_pred CCEEEEEEEECccCcc------ccc-------CCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCc
Confidence 4689999999997531 111 135 6788888888888999999999998742 3444444 2333
Q ss_pred eEEEec---------------CCCCCceeEEEEEccCcceeEEeeeeeccCC-CCCCceeEEEEEEEecccccccccCCC
Q 047201 261 TGIWKM---------------RTGNAIDGCAIFWRASRFKLLYEEGIEFNKL-GLRDNVAQICVLELLSQNFTENSAALP 324 (772)
Q Consensus 261 ~gvf~~---------------Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~l-glrdnVaqi~vLe~Lr~~~~~~~~~Lp 324 (772)
...+.. .......|+||| |||+++....+.|... ++.....+.++...+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ail---Sr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~i~----------- 139 (306)
T 2ddr_A 74 QTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIV---SKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIK----------- 139 (306)
T ss_dssp ECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEE---ESSCEEEEEEEECSCCC----CCCCEEEEEEEE-----------
T ss_pred eeeccCcccccccccccccccccCccCCeEEEE---ECCCcccccEEEcCCCCCcchhcCCCeEEEEEE-----------
Confidence 211111 112345799999 8899998887777542 1110011222222221
Q ss_pred CccCCCCeEEEEEEecCCCC------CChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCC------CcHHHHHHH
Q 047201 325 TSSAHSKKVAICNIHVLFNP------KRGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTP------KSPLYNFIL 392 (772)
Q Consensus 325 ~~~t~gk~LvVaNTHL~~nP------k~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStP------dS~vYr~Ls 392 (772)
.+++.|.|+||||.+.. .....|..|++.|++.+++... ..+.|+|||||||+.| .+..|+.|.
T Consensus 140 ---~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~-~~~~pvil~GDfN~~~~~~d~~~s~~~~~l~ 215 (306)
T 2ddr_A 140 ---KNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNI-PNNEYVLIGGDMNVNKINAENNNDSEYASMF 215 (306)
T ss_dssp ---ETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTC-CTTSCEEEEEECCCCCTTTSSCTTSHHHHHH
T ss_pred ---eCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcC-CCCCEEEEEeeCCCCcccccccCCHHHHHHH
Confidence 13578999999998752 2456799999999998877521 2357999999999999 888998876
Q ss_pred h
Q 047201 393 E 393 (772)
Q Consensus 393 ~ 393 (772)
.
T Consensus 216 ~ 216 (306)
T 2ddr_A 216 K 216 (306)
T ss_dssp H
T ss_pred H
Confidence 5
No 14
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.78 E-value=9e-18 Score=164.97 Aligned_cols=147 Identities=20% Similarity=0.223 Sum_probs=100.7
Q ss_pred eEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchh-h-HHHHHHhCCceEEEecC
Q 047201 190 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQ-D-LEVELKFRGYTGIWKMR 267 (772)
Q Consensus 190 fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~-d-L~~~L~~~GY~gvf~~R 267 (772)
||||||||+. |..|.+.|++.|+..+||||||||+.... + +...|...||..++..+
T Consensus 1 lrv~t~Nv~~---------------------~~~~~~~i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~~~ 59 (256)
T 2jc4_A 1 MKITTWNVNS---------------------LNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQ 59 (256)
T ss_dssp CEEEEEECSC---------------------HHHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEECC
T ss_pred CEEEEEEcCC---------------------cHHHHHHHHHHHHhcCCCEEEEEeeccchhcCCHhHHhhcCCeEEECCC
Confidence 6999999973 34677889999999999999999998632 2 34456668998877542
Q ss_pred CCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCCh
Q 047201 268 TGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKRG 347 (772)
Q Consensus 268 tg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~ 347 (772)
.+..|+|||+| +++..... .+.... .+..++++.++. +.|.|+|||+......+
T Consensus 60 --~~~~G~ailsr---~~~~~~~~-~~~~~~-~~~~~~~~~~~~-------------------~~~~v~~~h~~~~~~~~ 113 (256)
T 2jc4_A 60 --KTYNGVAIVSR---SVPQDVHF-GLPALP-DDPQRRVIAATV-------------------SGVRVINVYCVNGEALD 113 (256)
T ss_dssp --SSSCCEEEEES---SCCEEEEE-SCTTST-TCCSCCEEEEEE-------------------TTEEEEEEECCCCCSTT
T ss_pred --CcceEEEEEEC---CChHHhee-cCCCCc-cCCcCcEEEEEe-------------------CCEEEEEEEecCCCCCC
Confidence 34579999954 55654332 232211 112234433321 26999999997743211
Q ss_pred ----HhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCc
Q 047201 348 ----EIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKS 385 (772)
Q Consensus 348 ----dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS 385 (772)
+.|..|++.|.+.++++.. .+.|+|||||||+.+.+
T Consensus 114 ~~~~~~r~~~~~~l~~~~~~~~~--~~~~~il~GDFN~~~~~ 153 (256)
T 2jc4_A 114 SPKFKYKEQWFAALTEFVRDEMT--RHGKLVLLGDFNIAPAD 153 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHT--TCSSEEEEEECCCCCSG
T ss_pred cHhHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeECCCCCch
Confidence 2366788888888777632 46899999999999976
No 15
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.76 E-value=2.8e-18 Score=169.71 Aligned_cols=153 Identities=18% Similarity=0.144 Sum_probs=100.3
Q ss_pred eEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchh--hHHHHHHhCCceEEEecC
Q 047201 190 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQ--DLEVELKFRGYTGIWKMR 267 (772)
Q Consensus 190 fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~--dL~~~L~~~GY~gvf~~R 267 (772)
||||||||.... .|.+.|++.|...+|||||||||.... .+...|...||..++..+
T Consensus 1 lrv~t~Nv~~~~---------------------~~~~~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~~~gy~~~~~~~ 59 (268)
T 1ako_A 1 MKFVSFNINGLR---------------------ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQ 59 (268)
T ss_dssp CEEEEEECSCGG---------------------GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEE
T ss_pred CEEEEEehhHHH---------------------HHHHHHHHHHHHcCCCEEEEEeccCChhhCCHhHhccCCCcEEEeCC
Confidence 699999997421 245679999999999999999998632 234556667998877543
Q ss_pred CCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCC-
Q 047201 268 TGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKR- 346 (772)
Q Consensus 268 tg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~- 346 (772)
.+..|+|||+| ++++.... .+.... .+....++.++.. ..++.|+|+|||+.+....
T Consensus 60 --~~~~G~ailsr---~~~~~~~~-~~~~~~-~~~~~~~~~~~~~---------------~~~~~~~v~~~Hl~~~~~~~ 117 (268)
T 1ako_A 60 --KGHYGVALLTK---ETPIAVRR-GFPGDD-EEAQRRIIMAEIP---------------SLLGNVTVINGYFPQGESRD 117 (268)
T ss_dssp --TTEEEEEEEES---SCCSEEEE-SSTTCC-HHHHTTEEEEEEE---------------ETTEEEEEEEEECCCCCBTT
T ss_pred --CCcceEEEEEe---cCcceeee-CCCCcc-cccCCCEEEEEEE---------------cCCCeEEEEEEEecCCCCcc
Confidence 34689999955 44443221 122100 0001112222221 1245899999999875322
Q ss_pred ----hHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCcHH
Q 047201 347 ----GEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKSPL 387 (772)
Q Consensus 347 ----~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS~v 387 (772)
...|..|+..|.+.++++.. .+.|+|||||||+.|.+..
T Consensus 118 ~~~~~~~r~~~~~~l~~~~~~~~~--~~~~~Il~GDFN~~~~~~~ 160 (268)
T 1ako_A 118 HPIKFPAKAQFYQNLQNYLETELK--RDNPVLIMGDMNISPTDLD 160 (268)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHCC--TTSCEEEEEECCCCCSGGG
T ss_pred cchhHHHHHHHHHHHHHHHHHhhh--CCCCEEEEeECCCCCchhc
Confidence 13588899888888877632 4689999999999998643
No 16
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.73 E-value=2.1e-17 Score=166.58 Aligned_cols=163 Identities=18% Similarity=0.213 Sum_probs=101.0
Q ss_pred eEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecch-----hhHHHHHHh---CCce
Q 047201 190 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRF-----QDLEVELKF---RGYT 261 (772)
Q Consensus 190 fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f-----~dL~~~L~~---~GY~ 261 (772)
||||||||+.. ... .. ......+.|++.|. +|||||||||+.. .+|.+.|.. .+|.
T Consensus 1 lrv~s~NI~~~--g~~-----------~~-~~~~~~~~i~~~~~--~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y~ 64 (260)
T 2a40_B 1 LKIAAFNIRTF--GET-----------KM-SNATLASYIVRIVR--RYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTYH 64 (260)
T ss_dssp CEEEEEEEEEE--SHH-----------HH-HSHHHHHHHHHHHT--TCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSCE
T ss_pred CEEEEEehhhh--CCC-----------cc-chHHHHHHHHHHhc--cCCEEEEEEEEcCchhHHHHHHHHHHhccCCCcE
Confidence 69999999962 110 00 11122334444442 8999999999862 445555632 3487
Q ss_pred EEEecCCC--CCceeEEEEEccCcceeEEeeeeeccCCC-------CCCceeEEEEEEEecccccccccCCCCccCCCCe
Q 047201 262 GIWKMRTG--NAIDGCAIFWRASRFKLLYEEGIEFNKLG-------LRDNVAQICVLELLSQNFTENSAALPTSSAHSKK 332 (772)
Q Consensus 262 gvf~~Rtg--~~~dG~AIFyRrSRF~LL~~e~I~fs~lg-------lrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~ 332 (772)
.+...+.+ ...+++||+||++++++++... ++... + ....+++.++.. .+.++.
T Consensus 65 ~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~~--~~~~~~~~~~~~~-~R~p~~~~~~~~--------------~~~g~~ 127 (260)
T 2a40_B 65 YVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQ--YDDGCESCGNDSF-SREPAVVKFSSH--------------STKVKE 127 (260)
T ss_dssp EEECCCBCSSSCCBEEEEEECTTTCEEEEEEE--CCTTSTTTHHHHC-SSCCEEEEEECT--------------TSSSSE
T ss_pred EEEcccCCCCCCcEEEEEEEcCceeEecCcee--ccCCCcCCCCCce-eeCCEEEEEEeC--------------CCCCce
Confidence 77654433 2457899999999999987643 33210 1 122334444321 122679
Q ss_pred EEEEEEecCCCCCChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCC---cHHHHH
Q 047201 333 VAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPK---SPLYNF 390 (772)
Q Consensus 333 LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPd---S~vYr~ 390 (772)
|.|+||||.+ +. +..|++.|.+.+..+.+.+++.|+|||||||+.+. +..++.
T Consensus 128 ~~vi~~Hl~~--~~---~~~q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~~~ 183 (260)
T 2a40_B 128 FAIVALHSAP--SD---AVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCSYVTSSQWSS 183 (260)
T ss_dssp EEEEECCCCG--GG---HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCSTTTSCGGGGGG
T ss_pred EEEEEecCCC--CC---cHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCcccccchhhh
Confidence 9999999986 22 23467777776666554445689999999999988 655543
No 17
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.71 E-value=6.5e-17 Score=159.13 Aligned_cols=148 Identities=16% Similarity=0.264 Sum_probs=93.6
Q ss_pred eEEEeeccccCcccccccccccccCCccccchHHHHH-HHHHHhhcCCCcEEEEeeecch-hhHHHHH-HhCCceEEEec
Q 047201 190 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKR-SILFELGLWSADIMCFQEVDRF-QDLEVEL-KFRGYTGIWKM 266 (772)
Q Consensus 190 fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~-lIikEI~~~dPDIICLQEVD~f-~dL~~~L-~~~GY~gvf~~ 266 (772)
||||||||+... .+.+ .|++.|..++|||||||||... ..+...| ...||..+|..
T Consensus 2 l~v~t~Ni~~~~---------------------~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~ 60 (259)
T 2jc5_A 2 LKIISANVNGIR---------------------SAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHC 60 (259)
T ss_dssp EEEEEEECSSHH---------------------HHHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEEC
T ss_pred cEEEEEeeccHH---------------------HHHHhHHHHHHHhcCCCEEEEEEecchhhccChhhccccCCeEEEec
Confidence 799999997421 0112 4889999999999999999863 2343334 34689888764
Q ss_pred CCCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCC
Q 047201 267 RTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKR 346 (772)
Q Consensus 267 Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~ 346 (772)
....+..|+|||+|. ++..... .+.... .+..++++.++. +.|.|+|||+.+...
T Consensus 61 ~~~~~~~G~ailsr~---~~~~~~~-~~~~~~-~~~~~r~~~~~~-------------------~~~~v~~~h~~~~~~- 115 (259)
T 2jc5_A 61 AEKRGYSGVAVYSKR---KPDNVQI-GMGIEE-FDREGRFVRCDF-------------------GRLSVISLYLPSGSS- 115 (259)
T ss_dssp CSSTTCCCEEEEESS---CCSEEEE-SCSCHH-HHTTCCEEEEEE-------------------TTEEEEEEECCCCTT-
T ss_pred cCCCCcceEEEEEec---CceeEEe-CCCCCc-cCCCCeEEEEEc-------------------CCEEEEEEeccCCCC-
Confidence 333456799999654 4443322 121100 011233332221 369999999987543
Q ss_pred hHhHH----HHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCc
Q 047201 347 GEIKL----GQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKS 385 (772)
Q Consensus 347 ~dIRL----~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS 385 (772)
+..|. .|+..|.+.++++.+ .+.|+|||||||+.|.+
T Consensus 116 ~~~r~~~~~~~~~~l~~~~~~~~~--~~~~~Il~GDFN~~~~~ 156 (259)
T 2jc5_A 116 AEERQQVKYRFLDAFYPMLEAMKN--EGRDIVVCGDWNIAHQN 156 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--TCSEEEEEEECCCCCSG
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEeeCCCCCch
Confidence 23343 566777777766542 36799999999999875
No 18
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.69 E-value=1.8e-16 Score=153.76 Aligned_cols=145 Identities=18% Similarity=0.234 Sum_probs=90.9
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchh-hHHHHHHhCCceEEEec
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQ-DLEVELKFRGYTGIWKM 266 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~-dL~~~L~~~GY~gvf~~ 266 (772)
..||||||||.... ...|++.|++.|+..+||||||||+.... .+. .+...||...|..
T Consensus 6 ~~lri~t~Nv~g~~-------------------~~~~~~~~~~~i~~~~~DIv~LQE~~~~~~~~~-~l~~~~y~~~~~~ 65 (238)
T 1vyb_A 6 SHITILTLNINGLN-------------------SAIKRHRLASWIKSQDPSVCCIQETHLTCRDTH-RLKIKGWRKIYQA 65 (238)
T ss_dssp CCEEEEEEECSCCC-------------------SHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGG-GCCCTTCCEEEEE
T ss_pred CcceEEEEecccCC-------------------chhhHHHHHHHHHHcCCCEEEEecccCCCCCch-hHhhCCCCeEEEc
Confidence 57999999997421 12466789999999999999999996522 121 1233588876533
Q ss_pred CCCCCceeEEEEEccC-cceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCC
Q 047201 267 RTGNAIDGCAIFWRAS-RFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPK 345 (772)
Q Consensus 267 Rtg~~~dG~AIFyRrS-RF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk 345 (772)
....+..|+|||+|.. .+.+... .... .++++.++.. .+++.+.|+|+|+...
T Consensus 66 ~~~~~~~Gvail~r~~~~~~~~~~---~~~~------~~r~i~~~~~---------------~~~~~~~v~~~y~p~~-- 119 (238)
T 1vyb_A 66 NGKQKKAGVAILVSDKTDFKPTKI---KRDK------EGHYIMVKGS---------------IQQEELTILNIYAPNT-- 119 (238)
T ss_dssp CCSSSSCCEEEEECTTCCCEEEEE---EECT------TSSEEEEEEE---------------ETTEEEEEEEEECCSS--
T ss_pred cCCCCCceEEEEEeCCCCccccce---eEcC------CCcEEEEEEE---------------eCCCcEEEEEEecCCC--
Confidence 2223456999998876 4554431 1111 1233333321 1356899999999752
Q ss_pred ChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCc
Q 047201 346 RGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKS 385 (772)
Q Consensus 346 ~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS 385 (772)
. ..| +...+++.+.+. .+.|+|||||||+.+.+
T Consensus 120 ~-~~~--~~~~l~~~l~~~----~~~~~Il~GDFN~~~~~ 152 (238)
T 1vyb_A 120 G-APR--FIKQVLSDLQRD----LDSHTLIMGDFNTPLST 152 (238)
T ss_dssp S-HHH--HHHHHHHHTTTT----CCTTEEEEEECSSCSSG
T ss_pred C-cHH--HHHHHHHHHHhc----cCCCEEEEccCCCCCCc
Confidence 2 222 344444444332 35799999999998864
No 19
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.67 E-value=7.5e-16 Score=152.11 Aligned_cols=146 Identities=18% Similarity=0.191 Sum_probs=92.2
Q ss_pred eEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchh-hH-HHHHHhCCceEEEecC
Q 047201 190 FVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQ-DL-EVELKFRGYTGIWKMR 267 (772)
Q Consensus 190 fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~-dL-~~~L~~~GY~gvf~~R 267 (772)
||||||||.... .|.+.|++.|+..+||||||||+.... .+ ...+...||..++..
T Consensus 2 lrv~t~Nv~g~~---------------------~~~~~i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~~~gy~~~~~~- 59 (257)
T 2voa_A 2 LKIATFNVNSIR---------------------SRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSG- 59 (257)
T ss_dssp EEEEEEECSCGG---------------------GTHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEE-
T ss_pred eEEEEEecCChH---------------------HHHHHHHHHHhhcCCCEEEEEEeecchhhcCHHHhhhCCCcEEEcC-
Confidence 799999997421 123568999999999999999997532 22 234456799877653
Q ss_pred CCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCCh
Q 047201 268 TGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKRG 347 (772)
Q Consensus 268 tg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~ 347 (772)
..+..|+|||+| +++..... .+..... + .++++.++ + ..|.|+|+|+......+
T Consensus 60 -~~~~~G~ailsr---~~~~~~~~-~~~~~~~-~-~~r~l~~~-~------------------~~~~v~~~h~p~~~~~~ 113 (257)
T 2voa_A 60 -SKGRNGVAIASL---EEPEDVSF-GLDSEPK-D-EDRLIRAK-I------------------AGIDVINTYVPQGFKID 113 (257)
T ss_dssp -ETTEEEEEEEES---SCCEEEEE-SCSSSSC-C-GGGEEEEE-E------------------TTEEEEEEECCCCSCTT
T ss_pred -CCCccEEEEEEc---cChHHhee-cCCCCcc-c-cCcEEEEE-E------------------CCEEEEEEEeCCCCCCC
Confidence 234579999954 55543221 2221111 1 23433332 1 26999999996543211
Q ss_pred ----HhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCc
Q 047201 348 ----EIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKS 385 (772)
Q Consensus 348 ----dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS 385 (772)
..|..+++.|.+.++++.. .+.|+|||||||+.|.+
T Consensus 114 ~~~~~~r~~~~~~l~~~~~~~~~--~~~p~Il~GDFN~~~~~ 153 (257)
T 2voa_A 114 SEKYQYKLQWLERLYHYLQKTVD--FRSFAVWCGDMNVAPEP 153 (257)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCC--TTSCEEEEEECSCCCSG
T ss_pred cHHHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeeCCCCCch
Confidence 2244566667666666532 35799999999998875
No 20
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.65 E-value=8.1e-16 Score=155.13 Aligned_cols=152 Identities=20% Similarity=0.309 Sum_probs=94.3
Q ss_pred CCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchh-hHHHHHH-hCCc-eEE
Q 047201 187 SERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQ-DLEVELK-FRGY-TGI 263 (772)
Q Consensus 187 ~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~-dL~~~L~-~~GY-~gv 263 (772)
...||||||||+.... . .+ +.|++.|..++|||||||||.... .+...|. ..|| ..+
T Consensus 26 ~~~l~v~t~Ni~~~~~------------------~-~~-~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~ 85 (285)
T 2o3h_A 26 PATLKIASWNVDGLRA------------------W-IK-KKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQY 85 (285)
T ss_dssp BCCEEEEEEECSSHHH------------------H-HH-TTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEE
T ss_pred ccceEEEEEecccChh------------------h-hh-hhHHHHHHhcCCCEEEEEEeecchhhccHHHHhccCCcEEE
Confidence 4579999999985210 0 11 128889999999999999998632 2322232 4588 555
Q ss_pred Eec-CCCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCC
Q 047201 264 WKM-RTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLF 342 (772)
Q Consensus 264 f~~-Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~ 342 (772)
|.. ....+..|+|||+|...+.+... +... ..+..++++.++ .+.|.|+|||+..
T Consensus 86 ~~~~~~~~g~~Gvailsr~~~~~~~~~----~~~~-~~~~~~r~l~~~-------------------~~~~~v~~~h~p~ 141 (285)
T 2o3h_A 86 WSAPSDKEGYSGVGLLSRQCPLKVSYG----IGDE-EHDQEGRVIVAE-------------------FDSFVLVTAYVPN 141 (285)
T ss_dssp EECBC--CCSCCEEEEESSCCSEEEES----CSCG-GGSSBCCEEEEE-------------------CSSCEEEEEECCC
T ss_pred EecccCCcccceEEEEEccChHHeeec----cCCc-ccCCCCcEEEEE-------------------eCCEEEEEEEcCC
Confidence 554 22234469999977665544321 1110 011223433222 1369999999965
Q ss_pred CCCC---hHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCc
Q 047201 343 NPKR---GEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKS 385 (772)
Q Consensus 343 nPk~---~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS 385 (772)
.... .+.|..|+..|.+.++++.+ ..|+|||||||..+..
T Consensus 142 ~~~~~~~~~~r~~~~~~l~~~l~~~~~---~~p~Il~GDFN~~~~~ 184 (285)
T 2o3h_A 142 AGRGLVRLEYRQRWDEAFRKFLKGLAS---RKPLVLCGDLNVAHEE 184 (285)
T ss_dssp CCGGGTTHHHHHHHHHHHHHHHHHHHT---TSCEEEEEECSCCCSG
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhhcc---CCCEEEEEECCCCCch
Confidence 3211 13377888888888887653 4799999999998863
No 21
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.64 E-value=1.7e-15 Score=151.79 Aligned_cols=152 Identities=20% Similarity=0.315 Sum_probs=97.5
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecch-hhHHHHHH-hCCceEEEe
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRF-QDLEVELK-FRGYTGIWK 265 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f-~dL~~~L~-~~GY~gvf~ 265 (772)
..|||+||||..... ..+ +.|++.|+..+||||||||+... ..+...+. ..||..+|.
T Consensus 2 ~~l~i~s~Nv~g~~~-------------------~~~-~~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~ 61 (265)
T 3g91_A 2 AVLKIISWNVNGLRA-------------------VHR-KGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFT 61 (265)
T ss_dssp CEEEEEEEECSCHHH-------------------HHH-HTHHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEE
T ss_pred CccEEEEEEcCCchh-------------------hhh-hhHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEc
Confidence 369999999975221 111 24889999999999999999763 33333343 579998887
Q ss_pred cCCCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCC
Q 047201 266 MRTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPK 345 (772)
Q Consensus 266 ~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk 345 (772)
.....+..|+|||+|...+.+... +... ..+..++++.++. ..+.|+|+|+.....
T Consensus 62 ~~~~~~~~Gvail~k~~~~~~~~~----~~~~-~~d~~gr~i~~~~-------------------~~~~i~~vy~p~~~~ 117 (265)
T 3g91_A 62 PAERKGYSGVAMYTKVPPSSLREG----FGVE-RFDTEGRIQIADF-------------------DDFLLYNIYFPNGAM 117 (265)
T ss_dssp CBSSTTSCCEEEEESSCCSEEECC----CSCH-HHHSBSCEEEEEC-------------------SSCEEEEEECCCCTT
T ss_pred cCCCCCcCEEEEEEecChHHhccC----CCCc-ccCCcCCEEEEEe-------------------CCEEEEEEEecCCCC
Confidence 554556679999976554333211 1100 0012234433321 369999999965432
Q ss_pred Ch---HhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCc
Q 047201 346 RG---EIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKS 385 (772)
Q Consensus 346 ~~---dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS 385 (772)
.. ..|+.+...|.+.+.++.+ .+.|+|||||||..+..
T Consensus 118 ~~~~~~~r~~~~~~l~~~~~~~~~--~~~~~ii~GDfN~~~~~ 158 (265)
T 3g91_A 118 SEERLKYKLEFYDAFLEDVNRERD--SGRNVIICGDFNTAHRE 158 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEEECCCCCSG
T ss_pred CchhHHHHHHHHHHHHHHHHHHHc--CCCCEEEECccccCCch
Confidence 21 2366677777777777653 35799999999999864
No 22
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.62 E-value=3e-15 Score=155.58 Aligned_cols=152 Identities=20% Similarity=0.320 Sum_probs=89.5
Q ss_pred CCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecch-hhHHHHH-HhCCc-eEE
Q 047201 187 SERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRF-QDLEVEL-KFRGY-TGI 263 (772)
Q Consensus 187 ~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f-~dL~~~L-~~~GY-~gv 263 (772)
...||||||||+.... + .++.|++.|..++||||||||+... ..+...| ...|| ..+
T Consensus 59 ~~~lrv~t~Nv~g~~~------------------~--~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~ 118 (318)
T 1hd7_A 59 PATLKICSWNVDGLRA------------------W--IKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQY 118 (318)
T ss_dssp BCCEEEEEEECSSHHH------------------H--HHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEE
T ss_pred CCceEEEEEecCcchh------------------h--hhhhHHHHHHhhCCCEEEEEEccCchhhccHHHHhcCCCceEE
Confidence 4579999999985210 0 1113888999999999999999863 2233223 24689 555
Q ss_pred Eec-CCCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCC
Q 047201 264 WKM-RTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLF 342 (772)
Q Consensus 264 f~~-Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~ 342 (772)
+.. ....+..|+|||+|...+.+.. .+.... .+..++++.++ + +.|.|+|||+..
T Consensus 119 ~~~~~~~~g~~Gvailsr~~~~~~~~----~~~~~~-~~~~~r~l~~~-~------------------~~~~v~~vh~p~ 174 (318)
T 1hd7_A 119 WSAPSDKEGYSGVGLLSRQCPLKVSY----GIGDEE-HDQEGRVIVAE-F------------------DSFVLVTAYVPN 174 (318)
T ss_dssp EECC-----CCCEEEEESSCCSEEEE----SCSCGG-GSSSSCEEEEE-C------------------SSCEEEEEECCC
T ss_pred EecCCCCCccceEEEEEcCCceeEEe----cCCCcc-cCCCCcEEEEE-c------------------CCEEEEEEEcCC
Confidence 544 2223446999996655444321 111100 11123433222 1 369999999965
Q ss_pred CCCC---hHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCc
Q 047201 343 NPKR---GEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPKS 385 (772)
Q Consensus 343 nPk~---~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPdS 385 (772)
.... .+.|..|+..|.+.+.++.. ..|+|||||||..+.+
T Consensus 175 ~~~~~~~~~~r~~~~~~l~~~l~~~~~---~~pvIl~GDFN~~~~~ 217 (318)
T 1hd7_A 175 AGRGLVRLEYRQRWDEAFRKFLKGLAS---RKPLVLCGDLNVAHEE 217 (318)
T ss_dssp CCGGGTTHHHHHHHHHHHHHHHHHHHH---HSCEEEEEECSCCCSG
T ss_pred CCCccccHHHHHHHHHHHHHHHHhccc---CCCEEEEeeCCCCChh
Confidence 3211 13477888888888877653 2799999999998864
No 23
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.57 E-value=2.1e-14 Score=142.62 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=85.5
Q ss_pred CCceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchhhHHHHHHhCCceEEEec
Q 047201 187 SERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQDLEVELKFRGYTGIWKM 266 (772)
Q Consensus 187 ~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~dL~~~L~~~GY~gvf~~ 266 (772)
...||||||||.... .+.+.+++.|...+||||||||+.....-... ...||..++..
T Consensus 17 ~~~lri~s~Nv~~~~---------------------~~~~~l~~~i~~~~~DIv~lQE~~~~~~~~~~-~~~gy~~~~~~ 74 (245)
T 1wdu_A 17 GPPYRVLQANLQRKK---------------------LATAELAIEAATRKAAIALIQEPYVGGAKSMK-GFRGVRVFQST 74 (245)
T ss_dssp -CCEEEEEEECTTCH---------------------HHHHHHHHHHHHHTCSEEEEESCCC------C-CCSSCEEEECC
T ss_pred CcceeeeeeeccccH---------------------HHHHHHHHHHhhcCCCEEEEEcccccCCcccc-CCCcceEeccc
Confidence 357999999998521 24567899999999999999999763211100 13588755433
Q ss_pred CCCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCC
Q 047201 267 RTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKR 346 (772)
Q Consensus 267 Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~ 346 (772)
+...+..|+|||+++.+++++.. .... ..-...+.++ ..++.|.|+|+|+......
T Consensus 75 ~~~~~~~GvaIl~~~~~~~~~~~-----~~~~--~~~~~~~~i~-----------------~~~~~~~v~~vy~p~~~~~ 130 (245)
T 1wdu_A 75 AQGDGTVKAAIAVFDHDLDVIQY-----PQLT--TNNIVVVGIR-----------------TRAWEITLVSYYFEPDKPI 130 (245)
T ss_dssp CCTTCCCCEEEEECCSSCEEEEC-----TTTC--CSSEEEEEEE-----------------CSSCEEEEEEEECCTTSCS
T ss_pred cccCCCCCeEEEEECCCcceEEe-----cccc--cCCEEEEEEE-----------------cCCCcEEEEEEEeCCCCCH
Confidence 22234579999998888887532 1111 1111112222 1346899999999763211
Q ss_pred hHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCC
Q 047201 347 GEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPK 384 (772)
Q Consensus 347 ~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPd 384 (772)
...+.|+. +.++.+ ...|+|||||||+.+.
T Consensus 131 -~~~~~~l~---~~~~~~----~~~~~Ii~GDfN~~~~ 160 (245)
T 1wdu_A 131 -ESYLEQIK---RVERKM----GPKRLIFGGDANAKST 160 (245)
T ss_dssp -HHHHHHHH---HHHHTT----CSSSEEEEEECCCCCG
T ss_pred -HHHHHHHH---HHHHHh----CCCcEEEEeccccCcc
Confidence 11222322 222222 3579999999998763
No 24
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.54 E-value=3.9e-14 Score=157.80 Aligned_cols=165 Identities=15% Similarity=0.189 Sum_probs=95.7
Q ss_pred CCceEEEeeccccCcccccccccccccCCccccchHHHH-HHHHHHhhcCCCcEEEEeeecchh-hHH--HHHH-hCCce
Q 047201 187 SERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRK-RSILFELGLWSADIMCFQEVDRFQ-DLE--VELK-FRGYT 261 (772)
Q Consensus 187 ~~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk-~lIikEI~~~dPDIICLQEVD~f~-dL~--~~L~-~~GY~ 261 (772)
...||||||||.... .|..|. ..|++.|...+||||||||+.... .+. ..|. ..||.
T Consensus 147 ~~~LKI~TwNVnGl~------------------~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~ 208 (467)
T 2j63_A 147 SRMYKFITWNVAGLR------------------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYS 208 (467)
T ss_dssp TTEEEEEEEECSCHH------------------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEE
T ss_pred CCCeEEEEEEcCCCc------------------ccccccHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCce
Confidence 357999999997521 122222 578999999999999999997532 232 1243 46898
Q ss_pred EEEecC-CCCCceeEEEEEccCcc----e-eEEeeeeeccCC--------------CCCCceeEEEEEEEeccccccccc
Q 047201 262 GIWKMR-TGNAIDGCAIFWRASRF----K-LLYEEGIEFNKL--------------GLRDNVAQICVLELLSQNFTENSA 321 (772)
Q Consensus 262 gvf~~R-tg~~~dG~AIFyRrSRF----~-LL~~e~I~fs~l--------------glrdnVaqi~vLe~Lr~~~~~~~~ 321 (772)
.+|... ...+..|+|||+|...+ + .+. ..+.+... ...+.-++++.++..
T Consensus 209 ~~~~~~~~~~g~~GVAIlsR~pi~~~~l~~~~~-~~~~~p~~~~~~~~~gs~~~~~~~~D~egR~I~a~~~--------- 278 (467)
T 2j63_A 209 FVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCT-RGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLS--------- 278 (467)
T ss_dssp EEEECCSSSTTSCCEEEEEECCCCCCTSCCEEE-ESSCCCCC-----------CCCCCCCTTCCEEEEEEC---------
T ss_pred EEEecccCCCCcceEEEEEeCCccccccceeee-eccccccccccccccccccccccccCCCCcEEEEEEE---------
Confidence 777642 23356799999766543 1 111 11111100 001223455544431
Q ss_pred CCCCccCCC------CeEEEEEEecCCCCC---ChHhHHHHH-HHHHHHHHHhhcc----------------CCCCCEEE
Q 047201 322 ALPTSSAHS------KKVAICNIHVLFNPK---RGEIKLGQV-RTLLEKAHAVSKT----------------WNDAPVVL 375 (772)
Q Consensus 322 ~Lp~~~t~g------k~LvVaNTHL~~nPk---~~dIRL~Qa-~iLL~~L~aLsk~----------------~~~vPVIL 375 (772)
..+ +.|+|+|+|+..... +...|+.|. ..|.++|+++... ..+.|+||
T Consensus 279 ------~~g~~~~~~~~~~vinvYlP~~~~~~~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL 352 (467)
T 2j63_A 279 ------PDPDSASSSSRIALVNTYVANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIW 352 (467)
T ss_dssp ------SSCCC----CCEEEEEEECCCCCTTSTTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEE
T ss_pred ------eCCcccccCceEEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEE
Confidence 122 689999999975321 122344333 4455555555310 12579999
Q ss_pred EcCCCCCCCc
Q 047201 376 CGDFNCTPKS 385 (772)
Q Consensus 376 cGDFNStPdS 385 (772)
|||||..|.+
T Consensus 353 ~GDFN~~p~~ 362 (467)
T 2j63_A 353 AGDLNVAERD 362 (467)
T ss_dssp EEECCCCCST
T ss_pred eccccCCCch
Confidence 9999998864
No 25
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.45 E-value=3.9e-14 Score=147.24 Aligned_cols=168 Identities=13% Similarity=0.024 Sum_probs=101.0
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcE--EEEeeecch-----------hhHHHH
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADI--MCFQEVDRF-----------QDLEVE 254 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDI--ICLQEVD~f-----------~dL~~~ 254 (772)
-.|+||||||..... +.....|- ..|...+||| ||||||+.. +.+.+.
T Consensus 7 ~~i~V~T~Nv~~~~~------------~~~l~~wl-------~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~ 67 (282)
T 2imq_X 7 LSVHTVSWNSGHERA------------PTNLEELL-------GLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSL 67 (282)
T ss_dssp EEEEEEEEEEETCCC------------CSCCHHHH-------TCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHH
T ss_pred cEEEEEEEeCCCCcC------------chhHHHHh-------cccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHh
Confidence 469999999986421 11122332 2355689996 599999742 335666
Q ss_pred HHhCCceEEEecCCCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEE
Q 047201 255 LKFRGYTGIWKMRTGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVA 334 (772)
Q Consensus 255 L~~~GY~gvf~~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~Lv 334 (772)
|...+|..+.....+..+..++||+|.++++.+....+. ...+...+-+-+ ...+. ..+..|+
T Consensus 68 L~~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~~-~~~g~~g~kGav--~~r~~--------------~~~~~~~ 130 (282)
T 2imq_X 68 LTSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETII-VTVDDQKKSGGI--VTSFT--------------IYNKRFS 130 (282)
T ss_dssp HHHTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEEE-EECSTTSCSEEE--EEEEE--------------ETTEEEE
T ss_pred cCCCceEEEEeccCceeEEEEEEEEccccCccceeeeec-cccccccCCceE--EEEEE--------------ECCEEEE
Confidence 776678766432122334678888888877666543321 001211222211 22221 1457899
Q ss_pred EEEEecCCCCCChHhHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCCC---cHHHHHHHhC
Q 047201 335 ICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTPK---SPLYNFILEQ 394 (772)
Q Consensus 335 VaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStPd---S~vYr~Ls~~ 394 (772)
++||||.++....+.|..|++.|++++..+ ....+||+|||||..++ +.+++++.++
T Consensus 131 fvn~HL~~~~~~~~~R~~~~~~I~~~~~~~---~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~ 190 (282)
T 2imq_X 131 FTTSRMSDEDVTSTNTKYAYDTRLDYSKKD---DPSDFLFWIGDLNVRVETNATHAKSLVDQN 190 (282)
T ss_dssp EEEEECCTTCCCTTSSSSSCCGGGCTTSSS---SCCSEEEEEEECSCCBCSCHHHHHHHHHTT
T ss_pred EEEECCCCCCchHHHHHHHHHHHHHhhhcc---CccceEEEecccccccCCCHHHHHHHHhhc
Confidence 999999986433345677777776654332 23568999999997655 5677777654
No 26
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.35 E-value=4e-13 Score=139.72 Aligned_cols=157 Identities=15% Similarity=0.091 Sum_probs=104.0
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCC-CcEEEEeeecch------h---------hH
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWS-ADIMCFQEVDRF------Q---------DL 251 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~d-PDIICLQEVD~f------~---------dL 251 (772)
..+|||||||.....+. .-+|. .-|.+.|.+.+ +|||+|||++.. . ++
T Consensus 14 ~~~kV~TwNiqgs~~~t-------------eskw~---~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v 77 (262)
T 2f1n_A 14 TDFRVATWNLQGASATT-------------ESKWN---INVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPV 77 (262)
T ss_dssp GGCCEEEEEEEECTTSC-------------HHHHH---THHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCC
T ss_pred ceeEEEEEEcCCCCCCC-------------ccccc---ccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCH
Confidence 57999999999854321 12353 33555788888 999999999953 0 11
Q ss_pred HHHHHhCC------ceEEEecCC--CCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCC
Q 047201 252 EVELKFRG------YTGIWKMRT--GNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAAL 323 (772)
Q Consensus 252 ~~~L~~~G------Y~gvf~~Rt--g~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~L 323 (772)
.+.+...| +.++|..+. +....|+||+ ||+++. +.+.+...... .... +-++.
T Consensus 78 ~E~~w~lGt~srp~~~yiY~~~~D~~~~r~nlAIl---Sr~~ad--ev~vLp~~~~~-~Rp~-lgiri------------ 138 (262)
T 2f1n_A 78 RELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALV---SNRRAD--EVFVLSPVRQG-GRPL-LGIRI------------ 138 (262)
T ss_dssp EEEEEECCSSSSSCEEEEEEECSCSSSCSSCEEEE---ESSCCS--EEEEECCSSTT-CCCE-EEEEE------------
T ss_pred HHHHHHhCCCCCCceEEEEEeeccCCCCceeeEEE---Eccccc--ceEECCCCCCC-CCce-EEEEE------------
Confidence 12222345 767665543 4567899999 888887 34445543221 1121 12221
Q ss_pred CCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHhhccCCC-----CCEEEEcCCCCCCCcHHHHHHH
Q 047201 324 PTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSKTWND-----APVVLCGDFNCTPKSPLYNFIL 392 (772)
Q Consensus 324 p~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk~~~~-----vPVILcGDFNStPdS~vYr~Ls 392 (772)
..++++|||+.++ ++..|.+|++.+.+.+... .. .|+||+||||..|++..++++.
T Consensus 139 -------~~~~ff~tHa~a~--~g~da~a~v~~I~~~~~~~----~~~~~~~~pwii~GDFNr~P~sl~~~l~~ 199 (262)
T 2f1n_A 139 -------GNDAFFTAHAIAM--RNNDAPALVEEVYNFFRDS----RDPVHQALNWMILGDFNREPADLEMNLTV 199 (262)
T ss_dssp -------TTEEEEEEECCSS--SSCSHHHHHHHHHHHHHTC----SSHHHHTCEEEEEEECSSCHHHHHTTSCH
T ss_pred -------CCEEEEEEEecCC--CCccHHHHHHHHHHHHhcC----cccccCCCcEEEEecCCCCCcchhhhhhc
Confidence 1499999999985 4455888988888877652 23 6999999999999998776433
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.31 E-value=3.7e-12 Score=132.75 Aligned_cols=163 Identities=18% Similarity=0.189 Sum_probs=95.1
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhc-CCCcEEEEeeecchhh--H-HHHH--------
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGL-WSADIMCFQEVDRFQD--L-EVEL-------- 255 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~-~dPDIICLQEVD~f~d--L-~~~L-------- 255 (772)
..||||||||+.....+ ..+|+. .|++.|.+ .+||||.|||++.+.. + ...+
T Consensus 3 ~~~kv~TwNi~g~~~~~-------------~~k~~~---~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v 66 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAVN-------------ESKWNI---NVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPI 66 (261)
T ss_dssp GGSCEEEEECCCCSSSS-------------HHHHHH---HHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCC
T ss_pred cccEEEEEEcCCCCCCC-------------hhhhhh---HHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCch
Confidence 46899999999742211 123443 67778888 7899999999998421 1 0111
Q ss_pred ----HhC------CceEEEecC--CCCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCC
Q 047201 256 ----KFR------GYTGIWKMR--TGNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAAL 323 (772)
Q Consensus 256 ----~~~------GY~gvf~~R--tg~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~L 323 (772)
-+. ++.++|..+ .+.+..|+||+ +|+++.+.-.+.....+.... +.+.+ + +
T Consensus 67 ~e~~w~lg~~~r~~~~yiy~~~~d~~~g~~g~AIl---SR~~~~~v~~l~~~~~~~~~R-~~l~i-~-i----------- 129 (261)
T 1sr4_B 67 EEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIV---SRRQADEAFIVHSDSSVLQSR-PAVGI-R-I----------- 129 (261)
T ss_dssp EEEEEESSCSSSCCEEEEEEECCCTTTSCSCEEEE---ESSCCSEEEEECCCCCSSCCC-CEEEE-E-E-----------
T ss_pred hhhhhhcccccCCCceEEEEEeecCCCCccceEEE---EccchhceEEcCCCCCCCcCc-ceEEE-E-E-----------
Confidence 011 334444333 24456799999 777664432223222001111 22222 2 2
Q ss_pred CCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHhh--ccCCCCCEEEEcCCCCCCCcHHHHHHHh
Q 047201 324 PTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVS--KTWNDAPVVLCGDFNCTPKSPLYNFILE 393 (772)
Q Consensus 324 p~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLs--k~~~~vPVILcGDFNStPdS~vYr~Ls~ 393 (772)
++ ++|++||+... ++..+..|++.|.+++.... ...+..|+||+||||..|.+ +...|..
T Consensus 130 -----~g--~~f~s~Hl~~~--~~~ea~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p~~-~~~~L~~ 191 (261)
T 1sr4_B 130 -----GT--DVFFTVHALAT--GGSDAVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPAN-LEVALRQ 191 (261)
T ss_dssp -----TT--EEEEEEECCTT--TTTTHHHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHH-HHHHHTT
T ss_pred -----CC--eEEEEeCCCCC--CCchHHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCChhH-HHHHhhc
Confidence 23 99999999885 33447778887777765531 10012699999999999866 4445543
No 28
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.22 E-value=6.9e-11 Score=119.73 Aligned_cols=126 Identities=14% Similarity=0.167 Sum_probs=78.4
Q ss_pred ceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcEEEEeeecchhhHHHHHHhCCceEEEecCC
Q 047201 189 RFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADIMCFQEVDRFQDLEVELKFRGYTGIWKMRT 268 (772)
Q Consensus 189 ~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDIICLQEVD~f~dL~~~L~~~GY~gvf~~Rt 268 (772)
.|||+||||.... .|.+.+++.|...+||||||||+.. ..||. |..
T Consensus 7 ~mki~s~Nvn~~r---------------------~~~~~l~~~l~~~~~DIl~LQEt~~---------~~gy~--~~~-- 52 (240)
T 2ei9_A 7 RLRIGQINLGGAE---------------------DATRELPSIARDLGLDIVLVQEQYS---------MVGFL--AQC-- 52 (240)
T ss_dssp EEEEEEEECTTCH---------------------HHHHTHHHHHHHHTCSEEEEESCCT---------TSSSE--ECC--
T ss_pred cceEEEEecCccH---------------------HHHHHHHHHHHHcCCCEEEeecceE---------cCCce--Eec--
Confidence 5999999998632 2445688899999999999999963 23787 422
Q ss_pred CCCceeEEEEEccCcceeEEeeeeeccCCCCCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCChH
Q 047201 269 GNAIDGCAIFWRASRFKLLYEEGIEFNKLGLRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKRGE 348 (772)
Q Consensus 269 g~~~dG~AIFyRrSRF~LL~~e~I~fs~lglrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~d 348 (772)
.+..|+||+.+...+++.... .+. +.-.++ ++. ....+.|+|+|+...- ..+
T Consensus 53 -~~~~gvail~~~~~~~~~~~~--~~~-----~~~~~~--i~i-----------------~~~~i~i~svY~P~~~-~~~ 104 (240)
T 2ei9_A 53 -GAHPKAGVYIRNRVLPCAVLH--HLS-----STHITV--VHI-----------------GGWDLYMVSAYFQYSD-PID 104 (240)
T ss_dssp -SSSCSEEEEESSTTSCEEECG--GGC-----CSSEEE--EEE-----------------TTTTEEEEEEECCTTS-CSH
T ss_pred -cCCCCEEEEEecCCcceeeec--ccC-----CCCEEE--EEE-----------------eeccEEEEEEEcCCCC-chh
Confidence 235799999886555553211 111 111222 221 1146999999996521 122
Q ss_pred hHHHHHHHHHHHHHHhhccCCCCCEEEEcCCCCCC
Q 047201 349 IKLGQVRTLLEKAHAVSKTWNDAPVVLCGDFNCTP 383 (772)
Q Consensus 349 IRL~Qa~iLL~~L~aLsk~~~~vPVILcGDFNStP 383 (772)
.++.++..|+.. + .+.|+|||||||..+
T Consensus 105 ~~~~~l~~l~~~---~----~~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 105 PYLHRLGNILDR---L----RGARVVICADTNAHS 132 (240)
T ss_dssp HHHHHHHHHHHH---T----TTSCEEEEEECCCCC
T ss_pred HHHHHHHHHHHh---c----CCCcEEEEEeccccc
Confidence 344444333221 1 236999999999877
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.00 E-value=3.4e-09 Score=114.29 Aligned_cols=167 Identities=19% Similarity=0.143 Sum_probs=97.0
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhh---cCCCcE--EEEeeecc---------------
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELG---LWSADI--MCFQEVDR--------------- 247 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~---~~dPDI--ICLQEVD~--------------- 247 (772)
-++.|+||||.+... +.. |...|. ...||| |||||+..
T Consensus 25 ~~i~v~TwNv~g~~~------------~~~----------l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~ 82 (347)
T 1i9z_A 25 VKIFVASYNLNGCSA------------TTK----------LENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRR 82 (347)
T ss_dssp EEEEEEEEECTTCCC------------CSC----------CHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHH
T ss_pred cEEEEEeEecCCCCC------------chh----------HHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHH
Confidence 479999999986321 111 222233 368999 99999842
Q ss_pred -hh-hHHHHHHh-----CCceEEEecCCCCCceeEEEEEccCcceeEEeee---eeccCCCCCCceeEE-EEEEEecccc
Q 047201 248 -FQ-DLEVELKF-----RGYTGIWKMRTGNAIDGCAIFWRASRFKLLYEEG---IEFNKLGLRDNVAQI-CVLELLSQNF 316 (772)
Q Consensus 248 -f~-dL~~~L~~-----~GY~gvf~~Rtg~~~dG~AIFyRrSRF~LL~~e~---I~fs~lglrdnVaqi-~vLe~Lr~~~ 316 (772)
+. .+...|.. .+|..+... .-.+.+++||.|.+..+.+.... +...-.|.-.|-+-+ +.+..
T Consensus 83 ~w~~~i~~~L~~~~~~~~~Y~~v~s~--~l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~----- 155 (347)
T 1i9z_A 83 EWESCVKRLLNGKCTSGPGYVQLRSG--QLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDY----- 155 (347)
T ss_dssp HHHHHHHHHHHHTCCSSCCEEEEEEE--EETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEE-----
T ss_pred HHHHHHHHHHhhcccCCCceeEEEEe--eccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEE-----
Confidence 11 24556653 345543322 22356899998877655443222 222212221232322 22221
Q ss_pred cccccCCCCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHhh--ccCCCCCEEEEcCCC---CCCCcHHHHHH
Q 047201 317 TENSAALPTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVS--KTWNDAPVVLCGDFN---CTPKSPLYNFI 391 (772)
Q Consensus 317 ~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLs--k~~~~vPVILcGDFN---StPdS~vYr~L 391 (772)
.+..|+++|+||.++....+.|..|...|++.+.-.. .....-++|+||||| +.+.+.+.+++
T Consensus 156 ------------~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i 223 (347)
T 1i9z_A 156 ------------EDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCI 223 (347)
T ss_dssp ------------TTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCBSSCHHHHHHHH
T ss_pred ------------CCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCcccccccCccEEEecccccccCCCHHHHHHHH
Confidence 3568999999999976655679999988877653100 011235799999999 55666777777
Q ss_pred HhCC
Q 047201 392 LEQK 395 (772)
Q Consensus 392 s~~~ 395 (772)
..+.
T Consensus 224 ~~~~ 227 (347)
T 1i9z_A 224 AQGK 227 (347)
T ss_dssp HTTC
T ss_pred hhcc
Confidence 6543
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=98.73 E-value=2.4e-08 Score=108.12 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=90.2
Q ss_pred CceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCcE--EEEeeecch----hh-HHHHHHhCCc
Q 047201 188 ERFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSADI--MCFQEVDRF----QD-LEVELKFRGY 260 (772)
Q Consensus 188 ~~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPDI--ICLQEVD~f----~d-L~~~L~~~GY 260 (772)
-++.|+||||.+.... |....+| +...+....||| |||||+... .+ +.+.|. .+|
T Consensus 26 l~i~v~TwNv~g~~~~-----------~~~L~~~------l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~-~~Y 87 (357)
T 2xsw_A 26 VALFVATWNMQGQKEL-----------PPSLDEF------LLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLG-PHY 87 (357)
T ss_dssp EEEEEEEEECTTCSSC-----------CSCCHHH------HSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHC-TTE
T ss_pred ceEEEEEEecCCCCCC-----------cccHHHH------hccccccCCCCEEEEEeeeccchHHHHHHHHHHHhC-Ccc
Confidence 3689999999863210 1111122 112244568997 999999862 22 344442 244
Q ss_pred eEEEecCCCCCceeEEEEEccCcceeEEeeeeeccCCC---CCCceeEEEEEEEecccccccccCCCCccCCCCeEEEEE
Q 047201 261 TGIWKMRTGNAIDGCAIFWRASRFKLLYEEGIEFNKLG---LRDNVAQICVLELLSQNFTENSAALPTSSAHSKKVAICN 337 (772)
Q Consensus 261 ~gvf~~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~lg---lrdnVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaN 337 (772)
..+.. ..-++-+++||.|++..+.+.......-..| .-.|-+-+.+ ... ..+..|+++|
T Consensus 88 ~~v~s--~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~v-r~~---------------~~~t~~~Fvn 149 (357)
T 2xsw_A 88 VLLSS--AAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGI-SFT---------------FFGTSFLFIT 149 (357)
T ss_dssp EEEEE--EEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEE-EEE---------------ETTEEEEEEE
T ss_pred cchhh--hhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEE-EEE---------------ECCeEEEEEE
Confidence 33322 1223567899988775544432222211111 1123232221 111 1356899999
Q ss_pred EecCCCCCChHhHHHHHHHHHHHHHHhhc--------------cCCCCCEEEEcCCCCCCCc
Q 047201 338 IHVLFNPKRGEIKLGQVRTLLEKAHAVSK--------------TWNDAPVVLCGDFNCTPKS 385 (772)
Q Consensus 338 THL~~nPk~~dIRL~Qa~iLL~~L~aLsk--------------~~~~vPVILcGDFNStPdS 385 (772)
+||.++....+.|..|...|++.+.--.. ....-.||++||||...+.
T Consensus 150 ~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~ 211 (357)
T 2xsw_A 150 SHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSG 211 (357)
T ss_dssp EECCCSTTCHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSS
T ss_pred EccCCCCchHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCccccc
Confidence 99999766556788999888776631000 0013579999999987764
No 31
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.06 E-value=5e-05 Score=81.26 Aligned_cols=144 Identities=15% Similarity=0.090 Sum_probs=82.2
Q ss_pred CCCcEE--EEeeecc----hh-hHHHHHHh---CCceEEEecCCCCCceeEEEEEccCcceeEEeeeeeccCC---CCCC
Q 047201 235 WSADIM--CFQEVDR----FQ-DLEVELKF---RGYTGIWKMRTGNAIDGCAIFWRASRFKLLYEEGIEFNKL---GLRD 301 (772)
Q Consensus 235 ~dPDII--CLQEVD~----f~-dL~~~L~~---~GY~gvf~~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~l---glrd 301 (772)
..|||+ ||||+.. +. .+...|.. ..|..+... .-.+-.++||.|++..+.+.......-.. |.-.
T Consensus 46 ~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~--~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~G 123 (316)
T 4a9c_A 46 IPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQ--SLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLG 123 (316)
T ss_dssp SCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEE--EETTEEEEEEECGGGGGGEEEEEEEEEEEC------
T ss_pred CCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEee--eehheeeeeEEeHHHhhhCcccccceeeeeeeEecC
Confidence 457987 9999975 22 35566653 457655432 22346889998887666554333222222 2223
Q ss_pred ceeEEEEEEEecccccccccCCCCccCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHH----Hhhcc---CCCCCEE
Q 047201 302 NVAQICVLELLSQNFTENSAALPTSSAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAH----AVSKT---WNDAPVV 374 (772)
Q Consensus 302 nVaqi~vLe~Lr~~~~~~~~~Lp~~~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~----aLsk~---~~~vPVI 374 (772)
|-+-+++ ... ..+..|+++|+||.++...-+.|..+...|++.+. .+... ...-.||
T Consensus 124 NKGaV~i-r~~---------------~~~ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vf 187 (316)
T 4a9c_A 124 NKGAVGV-SFM---------------FNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLF 187 (316)
T ss_dssp CEEEEEE-EEE---------------ETTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC-------CCTTTTSSEEE
T ss_pred CCceEEE-EEE---------------ECCcEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEE
Confidence 4443321 111 13468999999999976666668888888877642 11100 0012489
Q ss_pred EEcCCCCCCC---cHHHHHHHhCCC
Q 047201 375 LCGDFNCTPK---SPLYNFILEQKL 396 (772)
Q Consensus 375 LcGDFNStPd---S~vYr~Ls~~~L 396 (772)
++||||-.-+ ..+.+++..+.+
T Consensus 188 w~GDLNyRi~~~~~~v~~~i~~~~~ 212 (316)
T 4a9c_A 188 WFGDLNYRLDMDIQEILNYISRKEF 212 (316)
T ss_dssp EEEECCCCBSSCHHHHHHHHHTTCC
T ss_pred EcCCccCCcCCCHHHHHHHHhcccH
Confidence 9999996543 345556655544
No 32
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.01 E-value=3e-05 Score=82.87 Aligned_cols=168 Identities=17% Similarity=0.214 Sum_probs=89.1
Q ss_pred ceEEEeeccccCcccccccccccccCCccccchHHHHHHHHHHhhcCCCc--EEEEeeecch------------hh----
Q 047201 189 RFVVLSYNILADYLALSHRSKLYFHIPRHLLDWEWRKRSILFELGLWSAD--IMCFQEVDRF------------QD---- 250 (772)
Q Consensus 189 ~fRVMSYNILAd~~a~s~~~~lY~ycP~~~LdWd~Rk~lIikEI~~~dPD--IICLQEVD~f------------~d---- 250 (772)
++.|.||||.+... +....+|- . .....|| ||||||++.. ..
T Consensus 9 ~i~v~TwNvng~~~------------~~~l~~wL------~--~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~ 68 (313)
T 3mtc_A 9 RFFAGTYNVNGQSP------------KECLRLWL------S--NGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKA 68 (313)
T ss_dssp EEEEEEEECTTCCC------------CSCTHHHH------S--SSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHH
T ss_pred EEEEEEEEcCCccC------------chhHHHHh------c--ccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHH
Confidence 57889999987431 11112231 1 0135799 7999999630 11
Q ss_pred HHHHHHh-CCceEEEecCCCCCceeEEEEEccCcceeEEeeeeeccCC---CCCCceeEEEEEEEecccccccccCCCCc
Q 047201 251 LEVELKF-RGYTGIWKMRTGNAIDGCAIFWRASRFKLLYEEGIEFNKL---GLRDNVAQICVLELLSQNFTENSAALPTS 326 (772)
Q Consensus 251 L~~~L~~-~GY~gvf~~Rtg~~~dG~AIFyRrSRF~LL~~e~I~fs~l---glrdnVaqi~vLe~Lr~~~~~~~~~Lp~~ 326 (772)
+...|.. .+|.-+.... -.+-.+.||.|++..+.+..-....-.. |.-.|-+-+++ ...
T Consensus 69 i~~~L~~~~~Y~~v~s~~--lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~i-r~~-------------- 131 (313)
T 3mtc_A 69 VSEGLHPDAKYAKVKLIR--LVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAI-RFQ-------------- 131 (313)
T ss_dssp HHHHSCTTSCEEEEEEEE--ETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEE-EEE--------------
T ss_pred HHHhcCCCCCEEEEEEec--hhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEE-EEE--------------
Confidence 2233321 2466553221 1234566787887655554333222222 22234343322 211
Q ss_pred cCCCCeEEEEEEecCCCCCChHhHHHHHHHHHHHHHHhhc---------cCCCCCEEEEcCCCCCCC----cHHHHHHHh
Q 047201 327 SAHSKKVAICNIHVLFNPKRGEIKLGQVRTLLEKAHAVSK---------TWNDAPVVLCGDFNCTPK----SPLYNFILE 393 (772)
Q Consensus 327 ~t~gk~LvVaNTHL~~nPk~~dIRL~Qa~iLL~~L~aLsk---------~~~~vPVILcGDFNStPd----S~vYr~Ls~ 393 (772)
-.+..|+++|+||.++-...+.|..+...|++.+. +.+ ....--||++||||-.-+ ..+-+++..
T Consensus 132 -~~~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~-f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~ 209 (313)
T 3mtc_A 132 -FHNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQ-FCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEE 209 (313)
T ss_dssp -ETTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHCC-BCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHT
T ss_pred -ECCcEEEEEeeccCCCchHHHHHHHHHHHHHHhcc-cCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhc
Confidence 13458999999999865444557778877776652 111 011234999999997653 234445544
Q ss_pred CC
Q 047201 394 QK 395 (772)
Q Consensus 394 ~~ 395 (772)
+.
T Consensus 210 ~~ 211 (313)
T 3mtc_A 210 KD 211 (313)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 33
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=97.06 E-value=0.00015 Score=68.46 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=31.5
Q ss_pred CCCcceeEEEecCCceeeeccCCCCcccccCCCCCCCCCCCCchhhhheeEe
Q 047201 715 RFKGTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVA 766 (772)
Q Consensus 715 ~F~gtiDYI~ys~~L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~ 766 (772)
.....|||||++..+.... +.. ..-.+.....+|+..|||||.+|+|+|.
T Consensus 200 ~~~~riD~I~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 200 VSRCRFDRIFLRSAKTAPP-VTP-DHMALIGMEKLDCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp CCEECCEEEEEECCTTSCC-CEE-EEEEEECCSCCTTSSCSCSBCEEEEEEE
T ss_pred CCCccEEEEEEeCcccccc-eee-eEEEEecccccCCCCCCCcccCEEEEEe
Confidence 3445699999984332211 111 1112334456788999999999999995
No 34
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=97.06 E-value=0.0002 Score=68.97 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=34.9
Q ss_pred ecccCCCCcceeEEEecCC---ceeeeccCCCCcccccCCCCCCCCCCCCchhhhheeEeee
Q 047201 710 TSYNRRFKGTVDYILRSEG---LQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAFV 768 (772)
Q Consensus 710 Tnyt~~F~gtiDYI~ys~~---L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~~ 768 (772)
+.+...+...|||||++.. +.+..+ .+.....+|...|||||.+|+|||.+.
T Consensus 201 ~~~~~~~~~riD~I~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~SDH~pv~a~~~iv 255 (256)
T 4gz1_A 201 LRIPAAYKHRFDRIFFRAEEGHLIPQSL-------DLVGLEKLDCGRFPSDHWGLLCTLNVV 255 (256)
T ss_dssp TCCSSCCEECCEEEEEECC-CSEEEEEE-------EEECCSCCTTSSCSCSBCEEEEEEEEC
T ss_pred cccCCCCCccEEEEEEECCccceeeeEE-------EEEeccccCCCCCCCccccEEEEEEEE
Confidence 3344556677999999832 222221 122334578889999999999999873
No 35
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=96.66 E-value=0.001 Score=64.30 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=28.9
Q ss_pred CcceeEEEecCCceeee--ccCCCCcccccCCCCCCCCCCCCchhhhheeEe
Q 047201 717 KGTVDYILRSEGLQTVR--VLAPIPKHAMQWTPGYPTKKWGSDHIALASEVA 766 (772)
Q Consensus 717 ~gtiDYI~ys~~L~~~~--vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~ 766 (772)
...|||||++..+++.. +++. +.+ -++..+||||.+|+|+|.
T Consensus 212 ~~RiD~I~~~~~~~~~~~~~~~~---~~~-----~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 212 KMRFDRLYWSGPLDKVKFTLEGR---QRI-----RSCLCFPSDHWAINATFF 255 (256)
T ss_dssp EECCEEEEEESSCCEEEEEEECC---SCC-----TTTCSCSCSSCEEEEEEE
T ss_pred CcCeEEEEEcCCceeeEEEEEee---Eec-----CCCCCCcCcccCEEEEEc
Confidence 34699999997777654 2221 111 134578999999999995
No 36
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=95.80 E-value=0.0047 Score=66.17 Aligned_cols=42 Identities=24% Similarity=0.190 Sum_probs=29.2
Q ss_pred CcceeEEEecCCceeee--ccCCCCcccccCCCCCCCCCCCCchhhhheeEe
Q 047201 717 KGTVDYILRSEGLQTVR--VLAPIPKHAMQWTPGYPTKKWGSDHIALASEVA 766 (772)
Q Consensus 717 ~gtiDYI~ys~~L~~~~--vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~ 766 (772)
...|||||++..|.+.. +++. .++ -++..|||||.+|+|+|.
T Consensus 318 ~~RIDyIf~s~~l~~~~~~vi~~------~ri--~~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 318 KMRFDRLYWSGPLDKVKFTLEGR------QRI--RSCLCFPSDHWAINATFF 361 (362)
T ss_dssp EECCEEEEEESSCCEEEEEEECC------SCC--TTTSSCSCSSCEEEEEEE
T ss_pred CcceEEEEEcCCcceeEEEEEee------eec--CCCCCCCCcccCEEEEEc
Confidence 35699999997777653 2221 111 134578999999999995
No 37
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=94.04 E-value=0.024 Score=55.23 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=27.1
Q ss_pred cceeEEEecCCce--ee--eccCCCCcccccCCCCCCCCCCCCchhhhheeEeeec
Q 047201 718 GTVDYILRSEGLQ--TV--RVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAFVE 769 (772)
Q Consensus 718 gtiDYI~ys~~L~--~~--~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~~~ 769 (772)
..|||||++..+. +. .|+. ...+|||.+++++|.++.
T Consensus 218 ~rID~i~~s~~~~~~~~~~~v~~---------------~~~~SDH~pv~~~l~~~~ 258 (259)
T 2jc5_A 218 WRIDYQMVTPELAAKAVSAHVYK---------------DEKFSDHAPLVVEYDYAA 258 (259)
T ss_dssp ECCEEEEECHHHHTTEEEEEECC---------------SSCCSSBCCEEEEESCCC
T ss_pred eEEEEEEECHHHHhHHhheeecC---------------CCCCCCcccEEEEEeccc
Confidence 6899999995444 33 2332 157999999999998753
No 38
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=93.87 E-value=0.025 Score=55.27 Aligned_cols=41 Identities=22% Similarity=0.372 Sum_probs=27.7
Q ss_pred cceeEEEecCCceeeeccCCCCcccccCCCCCCCCCCCCchhhhheeEee
Q 047201 718 GTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAF 767 (772)
Q Consensus 718 gtiDYI~ys~~L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~ 767 (772)
..|||||++..+.+... +.+.. -....++|||.+++++|.|
T Consensus 226 ~riD~i~~s~~~~~~~~------~v~~~---~~~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 226 KRLDYIFSNKELKVKES------KVIFN---NKNKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp ECCEEEEESSCCCEEEE------EEESS---SSSSCCCSSSCEEEEEECC
T ss_pred CeeEEEEeCCCeEEEEE------EEEeC---CCCCCCcCCccCEEEEEEC
Confidence 47999999977765432 11111 1123588999999999975
No 39
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=93.62 E-value=0.019 Score=57.72 Aligned_cols=55 Identities=18% Similarity=0.028 Sum_probs=30.0
Q ss_pred ccCCCCcceeEEEecCCce-e------eeccCCCCcccccCCCCCCCCCCCCchhhhheeEee
Q 047201 712 YNRRFKGTVDYILRSEGLQ-T------VRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAF 767 (772)
Q Consensus 712 yt~~F~gtiDYI~ys~~L~-~------~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~ 767 (772)
|.......|||||++..+. . +.++...+.. +......+....+|||.+++|+|.+
T Consensus 239 ~~~~~~~rID~I~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 239 YPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWS-VKSWFKTYTYQDFSDHYPVVGFTDN 300 (301)
T ss_dssp CTTSCCBCCEEEEEBTTSCCCSCEEEEECCCCCCCEE-EEETTEEEEECCSSSSCCEEEEEC-
T ss_pred CCCCCcceEeEEEEeCCCCCcccccceeeccccccce-eecccCCccccCCCCCccEEEEEec
Confidence 4334467899999995432 1 1222211111 1111112233689999999999986
No 40
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=92.86 E-value=0.079 Score=52.42 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=32.9
Q ss_pred CceecccC---CCCcceeEEEecCCceeeeccCCCCcccccCCCCCCCCCCCCchhhhheeEeeec
Q 047201 707 PLVTSYNR---RFKGTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAFVE 769 (772)
Q Consensus 707 p~~Tnyt~---~F~gtiDYI~ys~~L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~~~ 769 (772)
..|+.+.. .....|||||++..+.+... +.+.... .. ++|||.+++||+....
T Consensus 207 ~T~~~~~~~~~~~~~riD~I~~s~~~~~~~~------~v~~~~~---~~-~~SDH~PV~a~~~~~~ 262 (267)
T 3g6s_A 207 YTFHDFARIPAEDCEKIDFIFVTPQVLVKSC------EIPAEVP---EA-LLSDHNPQLADLELEH 262 (267)
T ss_dssp CSBCTTTTSCGGGCCCCEEEEECTTSEEEEE------EECCCCS---SS-CCCSBCCEEEEEEEC-
T ss_pred CCEeCCCCCCCCCCCcEeEEEeCCCceEEEE------EEecCCC---CC-CCCCcccEEEEEEecc
Confidence 34554443 24478999999977766542 1111111 23 7999999999998654
No 41
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=92.40 E-value=0.02 Score=56.07 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=26.8
Q ss_pred CCcceeEEEecCCce--eee--ccCCCCcccccCCCCCCCCCCCCchhhhheeEee
Q 047201 716 FKGTVDYILRSEGLQ--TVR--VLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAF 767 (772)
Q Consensus 716 F~gtiDYI~ys~~L~--~~~--vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~ 767 (772)
....|||||++..+. +.. |+.. . ....++|||.+|+++|.+
T Consensus 213 ~~~rID~i~~s~~~~~~~~~~~v~~~----~-------~~~~~~SDH~pv~~~l~~ 257 (257)
T 2voa_A 213 LGWRGDAILATPPLAERCVDCYADIK----P-------RLAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp CCBCCEEEEECHHHHTTEEEEEECCH----H-------HHSSSCCSBCCEEEEECC
T ss_pred ceEEEEEEEECHHHHhhhheeEeehh----h-------ccCCCCCCccCEEEEEeC
Confidence 346899999995554 332 2211 0 012579999999999974
No 42
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=92.21 E-value=0.019 Score=55.85 Aligned_cols=40 Identities=25% Similarity=0.224 Sum_probs=26.7
Q ss_pred CcceeEEEecCCce--ee--eccCCCCcccccCCCCCCCCCCCCchhhhheeEee
Q 047201 717 KGTVDYILRSEGLQ--TV--RVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAF 767 (772)
Q Consensus 717 ~gtiDYI~ys~~L~--~~--~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~ 767 (772)
...|||||++..+. +. .|+.. .....++|||.+++++|.+
T Consensus 213 ~~rID~i~~s~~~~~~~~~~~v~~~-----------~~~~~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 213 GLRIDHILVSPAMAAALKDVRVDLE-----------TRALERPSDHAPVTAEFDW 256 (256)
T ss_dssp CBCCEEEEECHHHHTTEEEEEECHH-----------HHTSSSCCSBCCEEEEECC
T ss_pred EEEEEEEEECHHHHhheeEEEEEhh-----------cccCCCCCCcccEEEEecC
Confidence 35799999995444 33 23221 0124689999999999975
No 43
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=92.17 E-value=0.088 Score=51.64 Aligned_cols=42 Identities=29% Similarity=0.405 Sum_probs=29.1
Q ss_pred cceeEEEecCCceeeeccCCCCcccccCCCCCCCCCCCCchhhhheeEeeec
Q 047201 718 GTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAFVE 769 (772)
Q Consensus 718 gtiDYI~ys~~L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~~~ 769 (772)
..|||||+ ..+++...-- +. .-+...++|||.+++++|.+.+
T Consensus 212 ~riD~i~~-~~~~~~~~~v------~~---~~~~~~~~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 212 EEIDYIYV-KGWQVQQTAS------LT---DSIDGRFPSDHFPLEAEVAGEN 253 (257)
T ss_dssp BCCEEEEE-ESEEEEEEEE------CC---CCBTTBCSSSBCCEEEEEEEC-
T ss_pred CceeEEEE-CCcEEEEEEE------ec---cCcCCcccCCcceEEEEEEEEe
Confidence 68999999 7776654311 11 1124468999999999999875
No 44
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=91.16 E-value=0.062 Score=54.00 Aligned_cols=52 Identities=15% Similarity=-0.015 Sum_probs=28.0
Q ss_pred CCcceeEEEecCCceee-------eccCCCCcccccCCCCCCCCCCCCchhhhheeEeee
Q 047201 716 FKGTVDYILRSEGLQTV-------RVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAFV 768 (772)
Q Consensus 716 F~gtiDYI~ys~~L~~~-------~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~~ 768 (772)
....|||||++..+... .+....+-. +....+......+|||.+++|+|.++
T Consensus 248 ~~~rID~I~~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~SDH~pv~a~l~~~ 306 (306)
T 2ddr_A 248 PAEYLDYIIASKDHANPSYIENKVLQPKSPQWT-VTSWFQKYTYNDYSDHYPVEATISMK 306 (306)
T ss_dssp CCBCCEEEEEBTTSCCCSEEEEEECCCCCCCEE-EEETTEEEEECCSCSSCCEEEEEEC-
T ss_pred CcceeeEEEEeCCCCCcccccceeeccccccce-eccccccccccCCCCCcceeEEEEeC
Confidence 35689999999544321 111111000 00011111235799999999999874
No 45
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=90.39 E-value=0.12 Score=49.33 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=34.3
Q ss_pred eeeecccccccccCCcCCCCCCceecccCCCCcceeEEEecCCce--ee--eccCCCCcccccCCCCCCCCCCCCchhhh
Q 047201 686 QLRSTYAEVEDCTGTRDSHGEPLVTSYNRRFKGTVDYILRSEGLQ--TV--RVLAPIPKHAMQWTPGYPTKKWGSDHIAL 761 (772)
Q Consensus 686 ~L~SaY~~~~~~~~~~d~~gep~~Tnyt~~F~gtiDYI~ys~~L~--~~--~vL~~~~~~~l~~~~glP~~~~pSDHiaL 761 (772)
.|..+|....+ ..+...|.++...-.-.|||||++..+. +. .++. ..+|||.++
T Consensus 176 ~l~d~~~~~~~------~~~~~T~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~----------------~~~SDH~pv 233 (238)
T 1vyb_A 176 DLIDIYRTLHP------KSTEYTFFSAPHHTYSKIDHIVGSKALLSKCKRTEIIT----------------NYLSDHSAI 233 (238)
T ss_dssp TEEEHHHHHCT------TCCCCSEEETTTTEEECCEEEEEEGGGGGGEEEEEEEC----------------CSSSSSCEE
T ss_pred CCEEhhHhhCC------CCCceeEEcCCCCcccceEEEEeCHHHHhhhhhceeec----------------CCCCCcccE
Confidence 46667654422 0112334344433335899999996553 22 2221 267999999
Q ss_pred heeEe
Q 047201 762 ASEVA 766 (772)
Q Consensus 762 ~aef~ 766 (772)
+++|.
T Consensus 234 ~~~l~ 238 (238)
T 1vyb_A 234 KLELR 238 (238)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
No 46
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=89.43 E-value=0.19 Score=49.40 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=31.2
Q ss_pred CCceecccC--CCCcceeEEEecCCc--ee--eeccCCCCcccccCCCCCCCCCCCCchhhhheeEeee
Q 047201 706 EPLVTSYNR--RFKGTVDYILRSEGL--QT--VRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAFV 768 (772)
Q Consensus 706 ep~~Tnyt~--~F~gtiDYI~ys~~L--~~--~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~~ 768 (772)
.+.|.+|.. ...-.|||||.+..+ .+ ..|+. ...+|||.++++||.+.
T Consensus 191 ~~T~~~~~~~~~~~~rID~i~~s~~~~~~v~~~~v~~---------------~~~~SDH~Pv~~~l~l~ 244 (245)
T 1wdu_A 191 VPTFDTIRGGKRYQSRVDVTFCTEDMLDLIDGWRVDE---------------DLVSSDHNGMVFNIRLQ 244 (245)
T ss_dssp CCSEEC-----CCEECCEEEEECGGGBTTEEEEEECT---------------TSSSSSBCCEEEEECCC
T ss_pred CCcEECCCCCCCCCCEEEEEEeChHHHhhccceEEcC---------------CCCCCCcccEEEEEEeC
Confidence 456665543 245699999999655 22 22321 25799999999999874
No 47
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=89.09 E-value=0.12 Score=50.43 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=25.5
Q ss_pred CcceeEEEecCCcee----eeccCCCCcccccCCCCCCCCCCCCchhhhheeEe
Q 047201 717 KGTVDYILRSEGLQT----VRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVA 766 (772)
Q Consensus 717 ~gtiDYI~ys~~L~~----~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~ 766 (772)
...|||||++..+.. ..++.. .+...++|||.+++++|.
T Consensus 225 ~~riD~il~s~~~~~~~~~~~i~~~-----------~~~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 225 GLRIDLLLASQPLAECCVETGIDYE-----------IRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp CBCCEEEEEEHHHHTTEEEEEECHH-----------HHTSSSCCSBCCEEEEEC
T ss_pred eEEEEEEEeCHHHHHHHHhceechh-----------hcCCCCCCCcccEEEEcc
Confidence 468999999954432 222210 113457899999999985
No 48
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=88.85 E-value=0.27 Score=48.69 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=37.1
Q ss_pred ceeeecccccccccCCcCCCCCCceecccCCCC-------cceeEEEecCCc----eeeeccCCCCcccccCCCCCCCCC
Q 047201 685 LQLRSTYAEVEDCTGTRDSHGEPLVTSYNRRFK-------GTVDYILRSEGL----QTVRVLAPIPKHAMQWTPGYPTKK 753 (772)
Q Consensus 685 l~L~SaY~~~~~~~~~~d~~gep~~Tnyt~~F~-------gtiDYI~ys~~L----~~~~vL~~~~~~~l~~~~glP~~~ 753 (772)
+.|..+|....+ .+..||-|..... -.|||||.|..+ .-..++.. .
T Consensus 187 ~gl~D~~r~~~p--------~~~~yT~~~~~~~~~~~~~~~rID~il~s~~~~~~~~~~~i~~~---------------~ 243 (265)
T 3g91_A 187 NGYVDTFRMFNS--------DPGQYTWWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSD---------------V 243 (265)
T ss_dssp TTEEETHHHHCC--------CSCCCSBCCSSTTTTTTTCCBCCEEEEEEGGGGGGEEEEEECTT---------------C
T ss_pred cCcEEeeHhhCC--------CCCCCCCcCCCCCccccCceEEEEEEEECHHHHhhhcEEEEeCC---------------C
Confidence 347777765543 1235665544322 269999999555 22222221 1
Q ss_pred CCCchhhhheeEeeec
Q 047201 754 WGSDHIALASEVAFVE 769 (772)
Q Consensus 754 ~pSDHiaL~aef~~~~ 769 (772)
.+|||.+|+++|.-..
T Consensus 244 ~~SDH~Pv~~~~~~~~ 259 (265)
T 3g91_A 244 MGSDHCPIGLEIELLE 259 (265)
T ss_dssp CSSSBCCEEEEEECCC
T ss_pred CCCCcceEEEEhhhhh
Confidence 3699999999997543
No 49
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=88.53 E-value=0.21 Score=49.81 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=25.0
Q ss_pred CcceeEEEecCCce--eee--ccCCCCcccccCCCCCCCCCCCCchhhhheeEee
Q 047201 717 KGTVDYILRSEGLQ--TVR--VLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAF 767 (772)
Q Consensus 717 ~gtiDYI~ys~~L~--~~~--vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~ 767 (772)
...|||||++..+. +.. |+.. ..+|||.+|+++|.+
T Consensus 246 ~~rID~i~~s~~~~~~v~~~~v~~~---------------~~~SDH~pv~~~l~l 285 (285)
T 2o3h_A 246 GWRLDYFLLSHSLLPALCDSKIRSK---------------ALGSDHCPITLYLAL 285 (285)
T ss_dssp CBCCEEEEECGGGGGGEEEEEECTT---------------CCSSSBCCEEEEECC
T ss_pred eeEEEEEEECHHHHhhhhheEeecc---------------CCCCCeecEEEEecC
Confidence 45899999996555 332 2211 136999999999975
No 50
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=88.47 E-value=0.19 Score=56.20 Aligned_cols=64 Identities=17% Similarity=0.119 Sum_probs=36.8
Q ss_pred eeeecccccccccCCcCCCCCCceecccCC-----CCcceeEEEecCCce--eeeccCCCCcccccCCCCCCCCCCCCch
Q 047201 686 QLRSTYAEVEDCTGTRDSHGEPLVTSYNRR-----FKGTVDYILRSEGLQ--TVRVLAPIPKHAMQWTPGYPTKKWGSDH 758 (772)
Q Consensus 686 ~L~SaY~~~~~~~~~~d~~gep~~Tnyt~~-----F~gtiDYI~ys~~L~--~~~vL~~~~~~~l~~~~glP~~~~pSDH 758 (772)
.|..+|...... ..|...|-+|... ..--|||||++..|. ++.. .++. ..++|||
T Consensus 396 gL~DafR~~~p~-----~~~~yTw~s~r~~~~~~n~g~RIDyIlvS~~l~~~v~~~------~I~~-------~~~~SDH 457 (467)
T 2j63_A 396 NSVDIFRQLYPQ-----AGPVYSFWSQRINGRPRNLGWRLDYFVVSSRLASYVVDC------FPMP-------TVMGSDH 457 (467)
T ss_dssp TEEEHHHHHCTT-----BCSCCSBCCTTTTTTTTTCCBCCEEEEEEGGGGGGEEEE------EECT-------TCCSSSB
T ss_pred CCEEehHhhCCC-----CCCCccccCCCCCcccCCCCceeEEEEEcHHHHcceeEE------EECC-------CCCCCCc
Confidence 478888665320 1122233344321 234799999996665 3322 1111 1269999
Q ss_pred hhhheeEee
Q 047201 759 IALASEVAF 767 (772)
Q Consensus 759 iaL~aef~~ 767 (772)
.+|+++|.+
T Consensus 458 ~PV~~~l~~ 466 (467)
T 2j63_A 458 CPFQMWMRH 466 (467)
T ss_dssp CCEEEEEEC
T ss_pred ccEEEEEEc
Confidence 999999975
No 51
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=87.76 E-value=0.36 Score=49.06 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=34.1
Q ss_pred CceecccC--CCCcceeEEEecCCceeee--ccCCCCccc-----ccCCCCCCCCC--------CCCchhhhheeEeee
Q 047201 707 PLVTSYNR--RFKGTVDYILRSEGLQTVR--VLAPIPKHA-----MQWTPGYPTKK--------WGSDHIALASEVAFV 768 (772)
Q Consensus 707 p~~Tnyt~--~F~gtiDYI~ys~~L~~~~--vL~~~~~~~-----l~~~~glP~~~--------~pSDHiaL~aef~~~ 768 (772)
..|+.|.. .....|||||++.++.+++ |+..-.... ..+...+|... .+|||.++++++...
T Consensus 212 ~T~~~~~~~~~~~~rID~Il~s~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~ 290 (298)
T 3mpr_A 212 GTFNNFDPNSFTESRIDHIFVSPSFHVKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVFD 290 (298)
T ss_dssp CSBCTTCTTCCCSCCCEEEEECTTSEEEEEEECCCCEEEECC----------------CCEEEECSSSBCCEEEEEEEC
T ss_pred CCccCCCCCCCCCceEEEEEeCCCeeEEEEEEecCccccCCCcccccCcccchhhhccChhhcccCCCCCcEEEEEecc
Confidence 45555543 2578999999997787764 332211100 11112233221 579999999998764
No 52
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=85.69 E-value=0.35 Score=49.87 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=24.7
Q ss_pred CcceeEEEecCCce--ee--eccCCCCcccccCCCCCCCCCCCCchhhhheeEee
Q 047201 717 KGTVDYILRSEGLQ--TV--RVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAF 767 (772)
Q Consensus 717 ~gtiDYI~ys~~L~--~~--~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~ 767 (772)
.-.|||||++..+. +. .|+.. ..+|||.+|+++|.+
T Consensus 279 ~~rID~il~s~~~~~~v~~~~v~~~---------------~~~SDH~Pv~~~l~l 318 (318)
T 1hd7_A 279 GWRLDYFLLSHSLLPALCDSKIRSK---------------ALGSDHCPITLYLAL 318 (318)
T ss_dssp CBCCEEEEECGGGGGGEEEEEECTT---------------CCSSSBCCEEEEECC
T ss_pred ceEEEEEEECHHHHhhhhheEeecc---------------CCCCCccCEEEEecC
Confidence 34899999996555 22 22211 135999999999974
No 53
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=56.84 E-value=3 Score=43.03 Aligned_cols=54 Identities=22% Similarity=0.261 Sum_probs=28.5
Q ss_pred ecccCCCCcceeEEEecCCc-eeee----ccCCCCcccccCCCC-CCCCCCCCchhhhhe
Q 047201 710 TSYNRRFKGTVDYILRSEGL-QTVR----VLAPIPKHAMQWTPG-YPTKKWGSDHIALAS 763 (772)
Q Consensus 710 Tnyt~~F~gtiDYI~ys~~L-~~~~----vL~~~~~~~l~~~~g-lP~~~~pSDHiaL~a 763 (772)
.+|...+...|||||++..+ ++.. ++.+....+-....| -++....|||.+++|
T Consensus 255 ~~~p~~~~~rLDyIlvs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~a 314 (317)
T 3i41_A 255 YNYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYYYVYNDFSDHYPIKA 314 (317)
T ss_dssp HHCTTCCCBCCEEEEEBTTSCCCSSEEEEECCCCCSCEEEEETTEEEEECCSSSBCCEEE
T ss_pred ccCCCCCCcceEEEEEeCCcCCcccccceeecccCCcccccccccccccCCCCcccceec
Confidence 35555666789999999433 3221 333222221110001 133344899999987
No 54
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=55.92 E-value=4.1 Score=40.76 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=29.8
Q ss_pred CceecccCCCCcceeEEEecCCceeeeccCCCCcccccCCCCCCCCCCCCchhhhheeEeeecc
Q 047201 707 PLVTSYNRRFKGTVDYILRSEGLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAFVET 770 (772)
Q Consensus 707 p~~Tnyt~~F~gtiDYI~ys~~L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~~~~ 770 (772)
+.|-+| ...-.|||||.|..|.... ..+. . ..+|||.++++||....+
T Consensus 175 ~T~~s~--~~~~rID~~l~s~~l~~~~----------~~i~--~--~~~SDH~Pv~~~l~~~~~ 222 (240)
T 2ei9_A 175 PTFSTA--NGESYVDVTLSTRGVRVSE----------WRVT--N--ESSSDHRLIVFGVGGGTT 222 (240)
T ss_dssp CSEEET--TEEECCEEEEECTTCCEEE----------EEEC--S--CCSSSBCCEEEEEEC---
T ss_pred ceEeCC--CCceEEEEEEecCccccCC----------eEEC--C--CCCCCcccEEEEECCCCC
Confidence 444444 3356999999997665411 0111 1 568999999999987654
No 55
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=50.36 E-value=3.3 Score=44.45 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=9.6
Q ss_pred ceecCC-ccccccccccccccc
Q 047201 85 RFVSGD-SHISSVSNSNRGVRQ 105 (772)
Q Consensus 85 ~~~~gd-~h~~~v~~~n~~~r~ 105 (772)
++++|. +=-.++.++...+..
T Consensus 349 ~~~~G~~~~eeal~~~~~~~~~ 370 (449)
T 3iot_A 349 NAASGRQTVDAALAAAQTNAAA 370 (449)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHH
Confidence 345555 223345555544443
No 56
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=50.03 E-value=7.2 Score=40.66 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=22.0
Q ss_pred cceeEEEecCCceeeeccC-CCCcccccCCCCCCCCCCCCchhhhhe
Q 047201 718 GTVDYILRSEGLQTVRVLA-PIPKHAMQWTPGYPTKKWGSDHIALAS 763 (772)
Q Consensus 718 gtiDYI~ys~~L~~~~vL~-~~~~~~l~~~~glP~~~~pSDHiaL~a 763 (772)
++||||+.++.-.. +.+. ++--..+ ....-+-.+..|||+++.+
T Consensus 213 ~~LDyi~~~~~~~~-~~~~~~~~~~a~-~~~~~~~~~~aSDH~PV~~ 257 (261)
T 1sr4_B 213 NILDYAILHDAHLP-RREQARERIGAS-LMLNQLRSQITSDHFPVSF 257 (261)
T ss_dssp CCCEEEEEECTTSC-TTCGGGCCEEEE-ECGGGCSSCCSSSBCCEEE
T ss_pred CcccEEEecCCCcc-cccccchhhhHH-HhhhhhhccccCCccceee
Confidence 89999999732210 0000 0000000 1112333466999999875
No 57
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=39.97 E-value=3.1 Score=41.27 Aligned_cols=55 Identities=18% Similarity=0.128 Sum_probs=28.1
Q ss_pred ecccCCCCcceeEEEecCCceeeeccCCCCccccc--CCCCC--CCCCCCCchhhhheeEe
Q 047201 710 TSYNRRFKGTVDYILRSEGLQTVRVLAPIPKHAMQ--WTPGY--PTKKWGSDHIALASEVA 766 (772)
Q Consensus 710 Tnyt~~F~gtiDYI~ys~~L~~~~vL~~~~~~~l~--~~~gl--P~~~~pSDHiaL~aef~ 766 (772)
|++ .+..+.+|+||++..+....+. +...+.+. +..++ +.....|||+++++||.
T Consensus 202 t~~-~~~~~~lD~I~~s~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 260 (260)
T 2a40_B 202 TTA-TSTNCAYDRIVVAGSLLQSSVV-PGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT 260 (260)
T ss_dssp CBS-SSCCCCCEEEEEESHHHHHHBC-TTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEBC
T ss_pred Ccc-cCCCCCcccEEEcchHhhhccc-CCCCceeehHHhcCCCHHHHhhcCCCCeEEEEeC
Confidence 444 3456799999999654311110 00001110 00111 11235799999999984
No 58
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=33.58 E-value=23 Score=36.30 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=24.8
Q ss_pred eeEEEecC----CceeeeccCCCCcccccCCCCCCCCCCCCchhhhheeEeee
Q 047201 720 VDYILRSE----GLQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALASEVAFV 768 (772)
Q Consensus 720 iDYI~ys~----~L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~aef~~~ 768 (772)
+|+|+|+. .++++.- .-+ .....|||-++.|+|.++
T Consensus 242 ~DrIl~~~~~~~~~~~~~y------------~~~-~~~~~SDH~PV~a~f~~~ 281 (282)
T 2imq_X 242 TDRALYKSGTGKTIQPLSY------------NSL-TNYKQTEHRPVLAKFRVT 281 (282)
T ss_dssp CEEEEEECSSSCCEEEEEE------------EEC-TTCCSSSSCCEEEEEEEE
T ss_pred cceEEEecCCCCceEeeEe------------cCC-CCCCCCCcCCeEEEEEEE
Confidence 79999982 3444321 111 246789999999999875
No 59
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=28.20 E-value=18 Score=37.79 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=22.2
Q ss_pred CcceeEEEecC-C-ceeeeccCCCCcccccCCCCCCCCCCCCchhhhh
Q 047201 717 KGTVDYILRSE-G-LQTVRVLAPIPKHAMQWTPGYPTKKWGSDHIALA 762 (772)
Q Consensus 717 ~gtiDYI~ys~-~-L~~~~vL~~~~~~~l~~~~glP~~~~pSDHiaL~ 762 (772)
.++|||||..+ . +..-.+ ..+.....++. +..|||++++
T Consensus 218 ~~~LDY~~~~~~~~~~~~~~------~a~~~~~~l~~-~~aSDH~PV~ 258 (262)
T 2f1n_A 218 QRTLDYAVAGNSVAFRPSPL------QAGIVYGARRT-QISSDHFPVG 258 (262)
T ss_dssp SCCCEEEEEEESSCCCCCCC------EEEETTTTSCC-CCSCSBCCEE
T ss_pred CCeEeEEEEcCCccccccch------hhhhhhhhhcc-CcCCCcccee
Confidence 78999999883 1 111111 11223334444 4599999875
Done!