Query 047202
Match_columns 735
No_of_seqs 312 out of 2594
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 08:46:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047202.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047202hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0920 ATP-dependent RNA heli 100.0 3E-133 7E-138 1146.6 45.8 641 1-732 274-923 (924)
2 KOG0922 DEAH-box RNA helicase 100.0 4E-122 8E-127 1004.0 43.0 512 1-663 150-664 (674)
3 KOG0924 mRNA splicing factor A 100.0 7E-118 2E-122 956.6 34.7 514 1-664 455-971 (1042)
4 KOG0923 mRNA splicing factor A 100.0 8E-115 2E-119 932.8 37.7 513 1-663 365-880 (902)
5 KOG0925 mRNA splicing factor A 100.0 2E-110 3E-115 873.3 41.4 511 1-663 146-664 (699)
6 PRK11131 ATP-dependent RNA hel 100.0 5E-102 1E-106 922.9 49.6 518 1-664 173-695 (1294)
7 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1E-97 2E-102 889.7 50.0 516 1-664 166-685 (1283)
8 COG1643 HrpA HrpA-like helicas 100.0 4.1E-98 9E-103 862.4 37.9 539 1-661 149-706 (845)
9 KOG0926 DEAH-box RNA helicase 100.0 1E-96 2E-101 804.5 29.0 540 1-664 359-1021(1172)
10 KOG0921 Dosage compensation co 100.0 1.2E-84 2.6E-89 716.4 27.6 643 10-729 489-1138(1282)
11 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.2E-74 2.5E-79 678.8 44.2 347 2-436 101-447 (819)
12 PRK11664 ATP-dependent RNA hel 100.0 1.1E-73 2.3E-78 672.3 45.5 456 2-659 104-564 (812)
13 PHA02653 RNA helicase NPH-II; 100.0 1.4E-51 3E-56 473.5 26.2 302 7-416 284-595 (675)
14 PRK01172 ski2-like helicase; P 100.0 3.8E-28 8.3E-33 286.7 22.8 315 11-417 132-493 (674)
15 PRK02362 ski2-like helicase; P 99.9 1.6E-24 3.6E-29 257.8 31.5 318 10-416 133-514 (737)
16 KOG0921 Dosage compensation co 99.9 9.2E-27 2E-31 259.1 -3.0 453 12-530 519-971 (1282)
17 PRK00254 ski2-like helicase; P 99.9 2.2E-22 4.7E-27 239.1 28.2 213 190-416 237-505 (720)
18 PRK11776 ATP-dependent RNA hel 99.9 1.3E-21 2.9E-26 221.4 16.1 118 183-325 234-352 (460)
19 KOG0331 ATP-dependent RNA heli 99.8 1.9E-20 4E-25 205.8 16.4 123 178-326 329-452 (519)
20 PTZ00110 helicase; Provisional 99.8 9.8E-21 2.1E-25 217.4 14.3 110 190-324 376-486 (545)
21 PTZ00424 helicase 45; Provisio 99.8 3.1E-20 6.7E-25 206.8 16.2 118 184-326 260-378 (401)
22 PRK10590 ATP-dependent RNA hel 99.8 4.7E-20 1E-24 208.2 17.1 119 181-324 235-354 (456)
23 TIGR00614 recQ_fam ATP-depende 99.8 1.1E-19 2.4E-24 205.9 18.6 122 180-326 215-337 (470)
24 TIGR03817 DECH_helic helicase/ 99.8 8.9E-20 1.9E-24 215.5 18.1 113 191-321 271-385 (742)
25 PRK01297 ATP-dependent RNA hel 99.8 8.1E-20 1.8E-24 207.6 16.9 116 183-323 327-443 (475)
26 PRK04837 ATP-dependent RNA hel 99.8 1.1E-19 2.4E-24 203.6 17.3 117 183-324 247-364 (423)
27 PRK11192 ATP-dependent RNA hel 99.8 1.1E-19 2.5E-24 204.3 16.9 123 179-326 233-356 (434)
28 PRK11634 ATP-dependent RNA hel 99.8 1.5E-19 3.2E-24 209.8 17.5 113 187-324 241-354 (629)
29 PRK11057 ATP-dependent DNA hel 99.8 1.8E-19 3.8E-24 209.8 18.1 113 189-326 234-347 (607)
30 PRK04537 ATP-dependent RNA hel 99.8 1.8E-19 3.9E-24 207.7 17.4 112 187-323 253-365 (572)
31 PLN00206 DEAD-box ATP-dependen 99.8 2.2E-19 4.7E-24 205.5 15.8 110 191-324 367-477 (518)
32 PF07717 OB_NTP_bind: Oligonuc 99.8 5.4E-20 1.2E-24 167.6 7.7 114 517-664 1-114 (114)
33 COG1202 Superfamily II helicas 99.8 3.1E-19 6.8E-24 192.1 14.2 312 10-431 334-679 (830)
34 KOG0330 ATP-dependent RNA heli 99.8 8.4E-20 1.8E-24 188.9 9.5 117 183-324 292-409 (476)
35 PLN03137 ATP-dependent DNA hel 99.8 9.3E-19 2E-23 206.4 17.7 120 182-326 671-791 (1195)
36 COG0513 SrmB Superfamily II DN 99.8 1E-18 2.2E-23 199.1 16.6 120 178-322 260-380 (513)
37 PRK09751 putative ATP-dependen 99.8 2.8E-18 6.2E-23 210.2 19.5 173 190-381 243-461 (1490)
38 PRK13767 ATP-dependent helicas 99.8 5.2E-18 1.1E-22 204.4 20.4 176 190-384 283-477 (876)
39 TIGR02621 cas3_GSU0051 CRISPR- 99.8 7.7E-18 1.7E-22 196.0 18.6 139 190-359 271-428 (844)
40 TIGR00580 mfd transcription-re 99.8 6.7E-18 1.4E-22 201.8 18.6 111 190-322 659-770 (926)
41 KOG0328 Predicted ATP-dependen 99.8 9.8E-18 2.1E-22 166.8 16.5 122 180-326 255-377 (400)
42 KOG0345 ATP-dependent RNA heli 99.8 2.6E-18 5.7E-23 181.7 12.3 140 180-342 244-386 (567)
43 TIGR01389 recQ ATP-dependent D 99.7 1.8E-17 3.9E-22 193.2 18.4 112 190-326 223-335 (591)
44 TIGR01587 cas3_core CRISPR-ass 99.7 2.3E-17 4.9E-22 181.0 17.8 108 190-323 221-337 (358)
45 PRK10917 ATP-dependent DNA hel 99.7 3E-17 6.5E-22 193.2 18.6 109 190-320 470-587 (681)
46 PRK10689 transcription-repair 99.7 1.5E-17 3.4E-22 202.7 16.3 110 190-321 808-918 (1147)
47 PF04408 HA2: Helicase associa 99.7 5.8E-18 1.2E-22 150.7 8.3 100 374-477 1-102 (102)
48 TIGR00643 recG ATP-dependent D 99.7 4.5E-17 9.7E-22 190.5 17.8 109 190-320 447-564 (630)
49 KOG0333 U5 snRNP-like RNA heli 99.7 3.4E-17 7.3E-22 175.1 13.9 114 185-323 511-625 (673)
50 COG1204 Superfamily II helicas 99.7 3.3E-16 7.1E-21 183.7 22.9 321 11-416 143-526 (766)
51 TIGR03158 cas3_cyano CRISPR-as 99.7 2.4E-16 5.3E-21 172.1 18.0 88 189-308 270-357 (357)
52 KOG0336 ATP-dependent RNA heli 99.7 5.9E-17 1.3E-21 168.3 12.2 203 11-326 364-576 (629)
53 KOG0332 ATP-dependent RNA heli 99.7 1.1E-16 2.3E-21 165.1 12.2 204 11-322 229-443 (477)
54 KOG0339 ATP-dependent RNA heli 99.7 1.7E-16 3.7E-21 168.8 12.1 123 178-325 455-578 (731)
55 COG1201 Lhr Lhr-like helicases 99.7 2.9E-15 6.4E-20 173.7 19.1 263 11-381 146-438 (814)
56 smart00847 HA2 Helicase associ 99.6 5.4E-16 1.2E-20 135.6 7.6 90 374-477 1-92 (92)
57 KOG0326 ATP-dependent RNA heli 99.6 2.5E-15 5.5E-20 152.0 12.2 121 181-326 312-433 (459)
58 KOG0340 ATP-dependent RNA heli 99.6 1.1E-14 2.3E-19 149.8 13.6 110 190-324 253-363 (442)
59 KOG0342 ATP-dependent RNA heli 99.6 3.8E-14 8.2E-19 151.5 15.7 109 190-323 329-438 (543)
60 KOG0335 ATP-dependent RNA heli 99.6 2.3E-14 5.1E-19 155.4 14.2 103 193-320 339-442 (482)
61 PRK09694 helicase Cas3; Provis 99.6 5.2E-14 1.1E-18 167.0 17.1 97 190-311 559-663 (878)
62 KOG0343 RNA Helicase [RNA proc 99.5 3.7E-14 8.1E-19 152.7 13.5 124 180-326 302-426 (758)
63 KOG0338 ATP-dependent RNA heli 99.5 2.8E-14 6.2E-19 152.4 9.9 109 190-323 425-534 (691)
64 KOG0950 DNA polymerase theta/e 99.5 6.8E-14 1.5E-18 159.9 11.7 244 1-323 328-612 (1008)
65 KOG0344 ATP-dependent RNA heli 99.5 1.2E-13 2.7E-18 150.9 12.7 112 190-325 386-498 (593)
66 PRK13766 Hef nuclease; Provisi 99.5 5.2E-13 1.1E-17 161.0 19.3 126 175-325 349-482 (773)
67 PHA02558 uvsW UvsW helicase; P 99.5 3E-13 6.4E-18 154.5 16.1 111 177-314 332-443 (501)
68 KOG0347 RNA helicase [RNA proc 99.5 5.4E-14 1.2E-18 151.5 8.8 123 190-351 462-585 (731)
69 COG0514 RecQ Superfamily II DN 99.5 2.9E-13 6.3E-18 152.1 14.6 112 189-325 228-340 (590)
70 COG1200 RecG RecG-like helicas 99.5 3.2E-13 6.9E-18 151.4 13.0 198 7-322 377-591 (677)
71 KOG0348 ATP-dependent RNA heli 99.4 2.9E-12 6.4E-17 137.9 14.4 135 178-330 412-564 (708)
72 KOG0341 DEAD-box protein abstr 99.4 4.5E-13 9.7E-18 138.8 7.9 108 190-322 420-528 (610)
73 KOG0327 Translation initiation 99.4 2.1E-12 4.6E-17 134.9 12.7 120 180-326 254-374 (397)
74 KOG0952 DNA/RNA helicase MER3/ 99.4 3.5E-11 7.5E-16 138.7 22.2 336 4-430 227-638 (1230)
75 COG4098 comFA Superfamily II D 99.4 9.6E-12 2.1E-16 127.8 15.1 108 190-320 304-415 (441)
76 KOG4284 DEAD box protein [Tran 99.3 4.9E-12 1.1E-16 138.6 11.4 209 11-322 164-379 (980)
77 TIGR00595 priA primosomal prot 99.3 9.6E-12 2.1E-16 141.4 13.7 87 222-316 284-375 (505)
78 KOG0334 RNA helicase [RNA proc 99.3 3.9E-12 8.5E-17 147.5 9.5 120 178-322 600-720 (997)
79 COG1205 Distinct helicase fami 99.3 1.7E-11 3.7E-16 146.2 13.4 116 190-322 305-422 (851)
80 PRK12898 secA preprotein trans 99.3 2.5E-11 5.3E-16 139.2 13.2 105 191-322 473-586 (656)
81 COG1197 Mfd Transcription-repa 99.3 5.7E-11 1.2E-15 140.5 16.3 200 6-322 708-913 (1139)
82 KOG0350 DEAD-box ATP-dependent 99.3 7E-12 1.5E-16 134.3 7.8 114 189-323 427-541 (620)
83 KOG0951 RNA helicase BRR2, DEA 99.3 6.1E-11 1.3E-15 138.2 15.9 216 185-408 540-823 (1674)
84 PRK05580 primosome assembly pr 99.3 6.6E-11 1.4E-15 139.3 16.2 100 204-317 439-544 (679)
85 KOG0346 RNA helicase [RNA proc 99.3 1.9E-11 4.2E-16 129.0 10.3 108 190-322 267-410 (569)
86 cd00079 HELICc Helicase superf 99.3 2.4E-11 5.2E-16 112.5 9.8 103 190-317 27-130 (131)
87 TIGR03714 secA2 accessory Sec 99.2 9.7E-11 2.1E-15 135.9 15.7 105 190-322 423-537 (762)
88 TIGR00603 rad25 DNA repair hel 99.2 6.1E-11 1.3E-15 137.5 13.7 107 190-325 495-610 (732)
89 PRK09200 preprotein translocas 99.2 5.6E-11 1.2E-15 139.1 13.5 106 190-322 427-541 (790)
90 COG1111 MPH1 ERCC4-like helica 99.2 1.3E-10 2.9E-15 125.6 12.4 127 175-322 350-481 (542)
91 PF00271 Helicase_C: Helicase 99.2 2.6E-11 5.6E-16 102.3 5.2 72 222-311 7-78 (78)
92 KOG0948 Nuclear exosomal RNA h 99.1 3.8E-11 8.1E-16 133.8 6.4 251 10-322 231-539 (1041)
93 PRK14701 reverse gyrase; Provi 99.1 1.6E-10 3.4E-15 145.3 12.7 117 191-325 330-459 (1638)
94 TIGR00631 uvrb excinuclease AB 99.1 1.7E-10 3.6E-15 134.5 10.8 124 179-322 429-553 (655)
95 KOG0947 Cytoplasmic exosomal R 99.1 6.6E-10 1.4E-14 127.0 14.4 266 9-322 398-723 (1248)
96 PRK09401 reverse gyrase; Revie 99.1 3.8E-10 8.2E-15 138.9 12.7 74 192-277 329-410 (1176)
97 PRK05298 excinuclease ABC subu 99.1 6.1E-10 1.3E-14 130.6 12.3 112 190-321 445-556 (652)
98 KOG0354 DEAD-box like helicase 99.1 4.1E-10 8.9E-15 128.5 10.2 118 186-322 408-529 (746)
99 smart00490 HELICc helicase sup 99.1 2.2E-10 4.7E-15 96.8 5.8 72 222-311 11-82 (82)
100 TIGR00963 secA preprotein tran 99.0 1.3E-09 2.9E-14 125.9 13.6 106 190-322 404-517 (745)
101 PRK12906 secA preprotein trans 99.0 9.2E-10 2E-14 128.2 12.2 113 190-331 439-560 (796)
102 KOG0337 ATP-dependent RNA heli 99.0 2.7E-09 5.9E-14 112.6 14.4 118 180-322 249-368 (529)
103 KOG0352 ATP-dependent DNA heli 99.0 6.5E-10 1.4E-14 117.1 9.2 112 190-326 254-366 (641)
104 TIGR01054 rgy reverse gyrase. 99.0 2.2E-09 4.9E-14 132.3 14.7 77 192-279 327-411 (1171)
105 COG1203 CRISPR-associated heli 99.0 6E-10 1.3E-14 132.5 9.3 105 190-322 439-550 (733)
106 COG4581 Superfamily II RNA hel 99.0 7.1E-09 1.5E-13 123.0 17.6 262 9-320 224-535 (1041)
107 PRK11448 hsdR type I restricti 99.0 2.4E-08 5.3E-13 122.5 21.2 149 180-350 688-847 (1123)
108 KOG0351 ATP-dependent DNA heli 99.0 2.9E-09 6.4E-14 126.7 12.8 121 181-326 475-596 (941)
109 PRK12900 secA preprotein trans 98.9 5E-09 1.1E-13 123.0 10.5 107 190-323 597-712 (1025)
110 PRK04914 ATP-dependent helicas 98.9 6.7E-09 1.4E-13 124.7 11.0 120 180-323 482-606 (956)
111 KOG0353 ATP-dependent DNA heli 98.6 1.8E-07 3.9E-12 97.3 11.4 95 177-278 303-397 (695)
112 KOG0349 Putative DEAD-box RNA 98.6 1E-07 2.2E-12 100.7 7.2 108 191-320 505-613 (725)
113 PRK13104 secA preprotein trans 98.6 4.3E-07 9.2E-12 106.9 12.8 73 182-265 437-509 (896)
114 COG1061 SSL2 DNA or RNA helica 98.5 1.1E-06 2.3E-11 99.0 14.7 97 190-312 282-378 (442)
115 PRK13107 preprotein translocas 98.5 1E-06 2.2E-11 103.5 12.6 75 180-265 440-514 (908)
116 PRK12904 preprotein translocas 98.5 8.5E-07 1.9E-11 104.3 11.8 77 178-265 419-495 (830)
117 TIGR02562 cas3_yersinia CRISPR 98.4 6E-06 1.3E-10 98.1 17.0 98 195-314 760-883 (1110)
118 KOG4150 Predicted ATP-dependen 98.3 4E-06 8.7E-11 91.6 11.3 102 192-312 526-629 (1034)
119 COG4096 HsdR Type I site-speci 98.2 4.9E-05 1.1E-09 87.7 17.6 155 177-353 408-578 (875)
120 KOG0329 ATP-dependent RNA heli 98.0 9.8E-06 2.1E-10 80.8 5.5 56 252-325 302-358 (387)
121 KOG0953 Mitochondrial RNA heli 97.9 5.8E-05 1.3E-09 83.1 10.2 115 190-322 356-477 (700)
122 PRK12903 secA preprotein trans 97.6 0.00045 9.8E-09 81.1 12.4 100 190-316 425-533 (925)
123 PRK12326 preprotein translocas 97.5 0.00079 1.7E-08 78.0 12.7 104 190-320 426-545 (764)
124 COG1198 PriA Primosomal protei 97.5 0.00021 4.6E-09 83.7 8.1 106 193-316 485-597 (730)
125 PLN03142 Probable chromatin-re 97.4 0.00047 1E-08 84.0 10.1 121 179-326 477-603 (1033)
126 TIGR01407 dinG_rel DnaQ family 97.2 0.0037 8E-08 76.5 14.6 134 178-318 662-811 (850)
127 PRK12901 secA preprotein trans 97.2 0.0012 2.6E-08 78.8 9.8 109 179-316 618-735 (1112)
128 TIGR00348 hsdR type I site-spe 97.1 0.01 2.2E-07 70.5 16.5 102 191-313 514-638 (667)
129 PRK12899 secA preprotein trans 96.9 0.0065 1.4E-07 72.5 12.3 103 191-320 568-679 (970)
130 PRK13103 secA preprotein trans 96.9 0.004 8.8E-08 74.0 10.4 73 182-265 442-514 (913)
131 COG0556 UvrB Helicase subunit 96.8 0.0051 1.1E-07 68.1 8.9 119 177-317 431-552 (663)
132 KOG0387 Transcription-coupled 96.6 0.046 1E-06 63.3 15.6 116 190-326 545-662 (923)
133 PF07652 Flavi_DEAD: Flaviviru 96.4 0.0045 9.7E-08 57.9 4.9 53 4-62 85-137 (148)
134 CHL00122 secA preprotein trans 96.4 0.019 4.1E-07 68.2 11.1 67 190-265 423-491 (870)
135 PF00270 DEAD: DEAD/DEAH box h 96.2 0.0042 9E-08 59.9 3.5 51 11-66 116-166 (169)
136 KOG0949 Predicted helicase, DE 96.1 0.0049 1.1E-07 72.3 4.2 97 225-339 965-1065(1330)
137 KOG0385 Chromatin remodeling c 95.8 0.07 1.5E-06 61.7 11.5 122 179-326 477-603 (971)
138 PRK12902 secA preprotein trans 95.6 0.085 1.8E-06 62.9 11.5 67 190-265 438-506 (939)
139 COG1110 Reverse gyrase [DNA re 94.9 0.36 7.7E-06 57.9 13.5 75 193-279 337-419 (1187)
140 PRK11747 dinG ATP-dependent DN 94.8 0.48 1E-05 56.8 14.9 132 178-318 523-671 (697)
141 cd00268 DEADc DEAD-box helicas 94.8 0.035 7.5E-07 55.5 4.6 47 10-62 139-185 (203)
142 COG1199 DinG Rad3-related DNA 94.7 0.27 5.8E-06 58.7 12.7 151 180-339 469-638 (654)
143 PRK14873 primosome assembly pr 94.0 0.34 7.4E-06 57.3 11.1 55 12-68 255-310 (665)
144 KOG0384 Chromodomain-helicase 93.6 0.24 5.2E-06 60.2 8.9 143 179-350 689-836 (1373)
145 smart00487 DEXDc DEAD-like hel 93.4 0.07 1.5E-06 52.0 3.6 53 11-71 126-183 (201)
146 KOG0391 SNF2 family DNA-depend 93.2 0.61 1.3E-05 56.5 11.2 124 179-326 1266-1391(1958)
147 COG1111 MPH1 ERCC4-like helica 92.5 0.14 2.9E-06 57.0 4.3 62 11-78 128-191 (542)
148 TIGR00604 rad3 DNA repair heli 92.1 1.1 2.4E-05 53.9 11.8 135 178-317 510-670 (705)
149 PF13307 Helicase_C_2: Helicas 91.8 0.2 4.4E-06 48.6 4.4 120 190-316 8-145 (167)
150 KOG1123 RNA polymerase II tran 91.4 0.57 1.2E-05 51.9 7.5 102 180-311 533-635 (776)
151 PRK14873 primosome assembly pr 91.2 0.5 1.1E-05 56.0 7.5 76 190-271 187-262 (665)
152 KOG0392 SNF2 family DNA-depend 90.6 0.57 1.2E-05 57.1 7.1 116 192-326 1341-1458(1549)
153 PRK08074 bifunctional ATP-depe 90.4 2.2 4.7E-05 53.0 12.3 164 178-349 740-925 (928)
154 PF02399 Herpes_ori_bp: Origin 90.2 5.4 0.00012 47.6 14.6 111 190-325 281-391 (824)
155 COG0653 SecA Preprotein transl 90.1 0.64 1.4E-05 55.4 7.0 99 190-315 428-538 (822)
156 cd00046 DEXDc DEAD-like helica 89.4 0.31 6.7E-06 44.3 3.1 45 11-61 100-144 (144)
157 PRK05580 primosome assembly pr 88.8 0.76 1.7E-05 54.9 6.6 74 191-271 190-263 (679)
158 TIGR00595 priA primosomal prot 87.1 1.8 3.9E-05 49.8 8.0 75 190-271 24-98 (505)
159 KOG0951 RNA helicase BRR2, DEA 86.7 4.1 9E-05 50.3 10.7 117 190-320 1358-1492(1674)
160 KOG0389 SNF2 family DNA-depend 86.6 5 0.00011 47.3 10.9 88 222-326 801-892 (941)
161 KOG1000 Chromatin remodeling p 85.4 4.1 8.9E-05 45.5 9.0 110 190-322 491-603 (689)
162 COG0553 HepA Superfamily II DN 84.0 4.4 9.5E-05 49.8 9.9 112 193-326 713-826 (866)
163 COG1198 PriA Primosomal protei 83.8 1.3 2.8E-05 52.7 4.9 75 190-271 244-318 (730)
164 KOG0390 DNA repair protein, SN 83.8 6.9 0.00015 46.7 10.7 110 195-325 598-710 (776)
165 PRK07246 bifunctional ATP-depe 80.7 25 0.00054 43.1 14.4 156 178-347 636-814 (820)
166 KOG0347 RNA helicase [RNA proc 80.1 3.6 7.9E-05 46.4 6.3 56 194-256 266-321 (731)
167 KOG0388 SNF2 family DNA-depend 77.7 16 0.00034 42.8 10.4 115 190-326 1043-1158(1185)
168 COG0513 SrmB Superfamily II DN 77.5 10 0.00022 43.8 9.3 88 178-271 84-179 (513)
169 COG1110 Reverse gyrase [DNA re 75.2 5.9 0.00013 48.1 6.5 67 190-257 124-190 (1187)
170 PRK10917 ATP-dependent DNA hel 72.5 10 0.00022 45.6 7.8 79 190-271 309-388 (681)
171 PF00176 SNF2_N: SNF2 family N 72.5 2 4.3E-05 45.3 1.7 38 14-61 134-172 (299)
172 TIGR00596 rad1 DNA repair prot 72.5 5.3 0.00012 48.5 5.5 40 174-213 271-317 (814)
173 cd00268 DEADc DEAD-box helicas 69.8 30 0.00066 34.0 9.6 85 180-271 56-148 (203)
174 PRK11634 ATP-dependent RNA hel 69.7 26 0.00056 41.6 10.3 85 181-271 64-154 (629)
175 KOG0949 Predicted helicase, DE 68.5 4.1 9E-05 49.0 3.2 55 9-71 627-682 (1330)
176 PF06862 DUF1253: Protein of u 68.4 44 0.00096 37.6 11.1 121 188-326 297-419 (442)
177 PF13872 AAA_34: P-loop contai 68.0 5.4 0.00012 42.2 3.7 37 17-61 175-220 (303)
178 KOG0339 ATP-dependent RNA heli 66.9 18 0.00039 40.7 7.5 87 178-271 278-375 (731)
179 KOG0354 DEAD-box like helicase 65.4 9.3 0.0002 45.3 5.3 53 12-72 177-234 (746)
180 TIGR00580 mfd transcription-re 64.9 16 0.00035 45.2 7.6 78 191-271 500-578 (926)
181 PRK11776 ATP-dependent RNA hel 62.2 32 0.0007 39.0 9.0 86 180-271 61-152 (460)
182 PRK11192 ATP-dependent RNA hel 62.1 41 0.00089 37.8 9.7 74 191-271 73-152 (434)
183 TIGR01054 rgy reverse gyrase. 60.3 13 0.00028 47.3 5.6 67 191-257 121-187 (1171)
184 KOG0331 ATP-dependent RNA heli 60.2 55 0.0012 37.6 10.0 72 193-271 167-244 (519)
185 TIGR00643 recG ATP-dependent D 59.3 27 0.00058 41.6 7.9 79 190-271 283-362 (630)
186 PF00270 DEAD: DEAD/DEAH box h 54.3 64 0.0014 30.4 8.4 69 180-256 34-103 (169)
187 PRK10689 transcription-repair 52.7 24 0.00053 44.8 6.3 78 191-271 649-727 (1147)
188 KOG1016 Predicted DNA helicase 49.7 28 0.00061 41.2 5.5 119 191-326 719-853 (1387)
189 PRK04837 ATP-dependent RNA hel 49.2 72 0.0016 35.7 8.9 73 192-271 84-162 (423)
190 PRK04914 ATP-dependent helicas 48.4 16 0.00034 45.3 3.6 50 13-70 271-324 (956)
191 PRK14701 reverse gyrase; Provi 48.0 29 0.00064 45.6 6.1 66 191-257 122-187 (1638)
192 KOG0338 ATP-dependent RNA heli 47.5 56 0.0012 37.1 7.2 73 192-271 253-332 (691)
193 PRK06526 transposase; Provisio 47.1 41 0.0009 35.0 6.1 55 12-72 157-211 (254)
194 PF13401 AAA_22: AAA domain; P 46.9 12 0.00026 33.9 1.8 37 16-60 89-125 (131)
195 PF13173 AAA_14: AAA domain 45.9 23 0.0005 32.4 3.6 39 14-61 61-99 (128)
196 KOG0390 DNA repair protein, SN 45.8 16 0.00035 43.7 3.1 54 9-71 371-424 (776)
197 PRK07952 DNA replication prote 45.7 33 0.00072 35.5 5.0 56 12-72 160-215 (244)
198 KOG1015 Transcription regulato 45.5 86 0.0019 38.4 8.6 118 191-325 1142-1280(1567)
199 PRK06620 hypothetical protein; 45.4 39 0.00084 34.2 5.4 40 12-61 83-122 (214)
200 PRK06893 DNA replication initi 44.9 44 0.00095 34.1 5.8 48 12-66 89-139 (229)
201 PRK10590 ATP-dependent RNA hel 44.2 80 0.0017 35.8 8.4 72 193-271 77-154 (456)
202 PRK04537 ATP-dependent RNA hel 44.1 1.2E+02 0.0026 35.6 10.0 73 192-271 85-164 (572)
203 PRK08116 hypothetical protein; 41.4 52 0.0011 34.5 5.8 52 12-68 176-227 (268)
204 PRK12723 flagellar biosynthesi 41.0 44 0.00095 37.1 5.4 55 12-71 252-307 (388)
205 PF13871 Helicase_C_4: Helicas 40.3 76 0.0017 33.5 6.7 119 243-414 56-177 (278)
206 PF05729 NACHT: NACHT domain 39.6 79 0.0017 29.4 6.4 62 17-81 84-150 (166)
207 PRK01297 ATP-dependent RNA hel 38.4 1.8E+02 0.0039 33.1 10.1 74 192-271 163-242 (475)
208 PF10264 Stork_head: Winged he 37.5 67 0.0014 27.1 4.6 55 332-386 3-68 (80)
209 PRK14974 cell division protein 36.3 76 0.0017 34.5 6.2 54 13-71 221-276 (336)
210 PF08148 DSHCT: DSHCT (NUC185) 35.4 43 0.00093 32.8 3.8 46 385-431 1-50 (180)
211 PRK14956 DNA polymerase III su 35.4 33 0.00071 39.1 3.3 47 10-65 117-163 (484)
212 PTZ00110 helicase; Provisional 34.8 91 0.002 36.4 7.0 72 193-271 205-282 (545)
213 PLN03142 Probable chromatin-re 34.6 44 0.00096 41.8 4.5 39 14-62 291-330 (1033)
214 TIGR03420 DnaA_homol_Hda DnaA 34.6 79 0.0017 31.7 5.8 17 12-28 88-104 (226)
215 PHA03368 DNA packaging termina 33.4 45 0.00097 39.4 4.0 50 13-71 351-400 (738)
216 PRK07246 bifunctional ATP-depe 32.7 19 0.00042 44.1 1.0 24 2-25 424-447 (820)
217 KOG1784 Small Nuclear ribonucl 31.6 18 0.00039 30.8 0.3 21 12-32 30-50 (96)
218 TIGR03117 cas_csf4 CRISPR-asso 29.8 2.5E+02 0.0054 33.4 9.4 76 190-272 469-556 (636)
219 TIGR00614 recQ_fam ATP-depende 28.2 92 0.002 35.5 5.5 61 190-257 50-110 (470)
220 TIGR03117 cas_csf4 CRISPR-asso 27.8 27 0.0006 41.2 1.1 16 10-25 202-217 (636)
221 PRK08903 DnaA regulatory inact 27.8 1.4E+02 0.0031 30.0 6.3 61 12-79 88-155 (227)
222 PRK13766 Hef nuclease; Provisi 27.4 2.5E+02 0.0054 34.2 9.4 75 189-271 56-136 (773)
223 TIGR01389 recQ ATP-dependent D 26.7 1.1E+02 0.0024 36.0 6.0 61 190-257 52-112 (591)
224 PTZ00424 helicase 45; Provisio 26.5 3.9E+02 0.0084 29.3 10.1 83 182-271 87-175 (401)
225 PF10007 DUF2250: Uncharacteri 26.2 1.7E+02 0.0037 25.4 5.4 47 339-387 6-53 (92)
226 PF01638 HxlR: HxlR-like helix 26.2 67 0.0014 27.5 3.0 48 351-399 16-73 (90)
227 TIGR02647 DNA conserved hypoth 25.2 78 0.0017 26.3 2.9 31 370-400 34-66 (77)
228 PRK08727 hypothetical protein; 24.9 1.7E+02 0.0038 29.7 6.3 16 12-27 91-106 (233)
229 COG5631 Predicted transcriptio 24.1 96 0.0021 29.6 3.7 63 337-400 80-151 (199)
230 PRK07003 DNA polymerase III su 23.8 64 0.0014 38.9 3.1 49 9-66 114-162 (830)
231 COG0610 Type I site-specific r 23.7 81 0.0017 39.5 4.2 35 17-61 379-413 (962)
232 PRK05255 hypothetical protein; 23.6 6.9E+02 0.015 24.4 9.9 50 363-417 13-63 (171)
233 PHA03333 putative ATPase subun 23.4 1.5E+02 0.0032 35.4 5.9 50 14-72 294-343 (752)
234 PF09848 DUF2075: Uncharacteri 23.2 41 0.0009 36.7 1.4 17 9-25 78-94 (352)
235 PF00448 SRP54: SRP54-type pro 23.2 1.6E+02 0.0035 29.2 5.6 49 13-66 82-130 (196)
236 PRK09087 hypothetical protein; 22.9 2E+02 0.0043 29.3 6.3 56 16-79 89-151 (226)
237 PRK08181 transposase; Validate 22.6 1.6E+02 0.0034 31.0 5.5 55 12-72 165-219 (269)
238 COG0514 RecQ Superfamily II DN 22.4 1.4E+02 0.0031 34.9 5.5 60 190-256 56-115 (590)
239 PRK09401 reverse gyrase; Revie 22.0 1.5E+02 0.0033 37.9 6.2 80 190-271 122-206 (1176)
240 COG2812 DnaX DNA polymerase II 22.0 52 0.0011 37.8 1.9 50 8-66 113-162 (515)
241 PRK06731 flhF flagellar biosyn 21.7 2.2E+02 0.0047 30.0 6.4 55 13-72 153-210 (270)
242 KOG3360 Acylphosphatase [Energ 21.5 30 0.00065 30.0 -0.1 18 308-326 16-33 (98)
243 PRK04296 thymidine kinase; Pro 21.3 1.6E+02 0.0034 29.0 5.0 37 13-58 77-113 (190)
244 PRK05642 DNA replication initi 21.2 1.1E+02 0.0024 31.3 4.0 47 12-66 95-144 (234)
245 COG3028 Uncharacterized protei 21.1 5.5E+02 0.012 25.0 8.1 112 364-501 24-140 (187)
246 cd00046 DEXDc DEAD-like helica 21.0 5.4E+02 0.012 22.3 8.3 61 189-257 28-88 (144)
247 PF03354 Terminase_1: Phage Te 21.0 1.1E+02 0.0025 34.8 4.5 44 14-63 123-166 (477)
248 PRK07994 DNA polymerase III su 20.9 74 0.0016 37.8 2.9 49 9-66 114-162 (647)
249 COG2256 MGS1 ATPase related to 20.5 69 0.0015 35.4 2.4 40 13-64 103-143 (436)
No 1
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=3.1e-133 Score=1146.62 Aligned_cols=641 Identities=51% Similarity=0.815 Sum_probs=569.5
Q ss_pred CcccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCC
Q 047202 1 MNFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEG 80 (735)
Q Consensus 1 ~~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~g 80 (735)
.|+|+|++|+.+.++||||+||||||++++||||.++|.++.+| |+|||||||||+|++.|++||++||+++|||
T Consensus 274 vLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~-----p~LkvILMSAT~dae~fs~YF~~~pvi~i~g 348 (924)
T KOG0920|consen 274 VLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRN-----PDLKVILMSATLDAELFSDYFGGCPVITIPG 348 (924)
T ss_pred HHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhC-----CCceEEEeeeecchHHHHHHhCCCceEeecC
Confidence 37899999999999999999999999999999999999999887 7899999999999999999999999999999
Q ss_pred ceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHH
Q 047202 81 RTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQ 160 (735)
Q Consensus 81 r~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (735)
|+|||.+|||||++.+++|....+++.. +.. .......
T Consensus 349 rtfpV~~~fLEDil~~~~~~~~~~~~~~----------------~~~--------------~~~~~~~------------ 386 (924)
T KOG0920|consen 349 RTFPVKEYFLEDILSKTGYVSEDDSARS----------------GPE--------------RSQLRLA------------ 386 (924)
T ss_pred CCcchHHHHHHHHHHHhccccccccccc----------------ccc--------------cCccccc------------
Confidence 9999999999999999988765443320 000 0000000
Q ss_pred HHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHh
Q 047202 161 TRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKV 240 (735)
Q Consensus 161 ~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~v 240 (735)
.++.+ +..+|+++|++++++|++...+|+|||||||++||..+.+.|.....+.+..++.|+||||.|+.+||++|
T Consensus 387 ---~~~~~-~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V 462 (924)
T KOG0920|consen 387 ---RLKLW-EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV 462 (924)
T ss_pred ---cchhc-cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh
Confidence 01112 22389999999999999998899999999999999999999988777776667899999999999999999
Q ss_pred cCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEcee
Q 047202 241 FLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYT 320 (735)
Q Consensus 241 f~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t 320 (735)
|.++|+|.||||+||||||||||||||+||||||++|++.|||..++++|...|+|||+|+||+|||||+++|+|||||+
T Consensus 463 F~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~ 542 (924)
T KOG0920|consen 463 FKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYT 542 (924)
T ss_pred cCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhhhhhcc
Q 047202 321 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAK 400 (735)
Q Consensus 321 ~~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG~~l~~ 400 (735)
+..|+.++.+|++|||+|+||+++||++|.++++++..||+.+++||+.++|..|+..|..+||++.+++|||||+++++
T Consensus 543 ~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~ 622 (924)
T KOG0920|consen 543 RSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLAS 622 (924)
T ss_pred hhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHh
Confidence 99999988779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHhhcccCChhHHHHHHhhhccCCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCcHHHHHHHH
Q 047202 401 LPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLMVAY 480 (735)
Q Consensus 401 lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sDhl~~l~~y 480 (735)
||+||++|||+++|++|+|++|+++|||+|+.++||+.|.++++.+++++..+.. +..||||++++||
T Consensus 623 lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~------------~~~SD~la~~~ay 690 (924)
T KOG0920|consen 623 LPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLAL------------DSISDHLAVVRAY 690 (924)
T ss_pred CCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhcc------------CCcchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988852 2479999999999
Q ss_pred HHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCcccccccccccccC
Q 047202 481 KKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDESQMFNMYA 560 (735)
Q Consensus 481 ~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~~~~~n~~s 560 (735)
+.|+++.+. |..++.+||++||||.++|+++.++|.||.+.|.++|+++.+.. .......+|.|+
T Consensus 691 ~~w~~~~~~-~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~--------------~~~~~~~~n~~s 755 (924)
T KOG0920|consen 691 AGWREILRS-GPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISST--------------AALTDSECNHNS 755 (924)
T ss_pred HHHHHHHhc-cchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcc--------------cccCchhhhhcC
Confidence 999987554 35678999999999999999999999999999999999987542 112245788999
Q ss_pred CcHHHHHHHHHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCcccccccCCCCeEEEEeecc
Q 047202 561 NHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLEKVE 640 (735)
Q Consensus 561 ~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~lvy~e~~~ 640 (735)
.++++++++||||||||++..... .+ ..+....++.+.+.|+|||+|+|+....+..+|++|+|+++
T Consensus 756 ~~~~~iravl~a~lyP~i~~~~~~---------~~----~~~~~~~~~~~~~~v~i~~~sv~~~~~~~~~p~l~~~~k~~ 822 (924)
T KOG0920|consen 756 QNPELVRAVLCAGLYPNIAFVRRM---------EP----KSKSVTFVTKADGRVIIHPSSVNEQSTGFQSPFLVFPEKVK 822 (924)
T ss_pred CCHHHHHHHHhccCCCceeeeecc---------cC----CcCcceeecCCceeEEEecchhhccccccCCcceEEeeecc
Confidence 999999999999999999986531 00 00111222333458999999999988888888999999999
Q ss_pred cCc-ceeecCCCcChHHHHHhcCcee-eecccCeEEE---cCeEEEEechhHHHHHHHHHHHHHHHHHHHHhCCCCCC--
Q 047202 641 TNK-VFLRDTTIVSPFSILLFGGSIN-VQHQTGQVTI---DGWLKVTAPAQTAVLFKELRLTLHSILRQMIRNPQNST-- 713 (735)
Q Consensus 641 t~k-~~lr~~T~V~p~~llLfgg~l~-~~~~~~~l~v---D~Wi~~~~~~~~~~ll~~LR~~ld~ll~~~~~~P~~~~-- 713 (735)
|++ +|+|+||+|++++++||||... +....+.+.+ |+|+.|.++++++.++++||..+|.+|.+++++|....
T Consensus 823 t~~~~~~rd~T~v~~~~~llfgg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~Lr~~l~~~l~~~~~~p~~~~~~ 902 (924)
T KOG0920|consen 823 STRLVSLRDTTSVSSSALLLFGGGISTVRMKSGSLALLLPDGWLRFKALPKTARLLKELRRELDSLLSKKIRSPCASLPD 902 (924)
T ss_pred cCCcceeeecCCCCcHHheeecCCceeecCCCCccceecCCceEEeecchhHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence 999 9999999999999999999654 6666666665 99999999999999999999999999999999999665
Q ss_pred --CCchHHHHHHHHHHhhcCC
Q 047202 714 --IANNEVVKSMIQLLLEEDK 732 (735)
Q Consensus 714 --~~~~~~~~~i~~ll~~~~~ 732 (735)
..+.+....+..++..++.
T Consensus 903 ~~~~~~~~~~~~~~~~~~~~~ 923 (924)
T KOG0920|consen 903 SSGKGSESPSLIANLLVGEKK 923 (924)
T ss_pred cccccccchhhhhhhhhhhcc
Confidence 3567777888888877653
No 2
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.8e-122 Score=1004.00 Aligned_cols=512 Identities=36% Similarity=0.591 Sum_probs=458.8
Q ss_pred CcccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCC
Q 047202 1 MNFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEG 80 (735)
Q Consensus 1 ~~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~g 80 (735)
||+|+++.||.|++||+|||||||||++.||+||++||+++++| ++||||+||||+|+++|++||++||++.|||
T Consensus 150 ~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-----~~LklIimSATlda~kfS~yF~~a~i~~i~G 224 (674)
T KOG0922|consen 150 MLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-----PDLKLIIMSATLDAEKFSEYFNNAPILTIPG 224 (674)
T ss_pred HHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-----CCceEEEEeeeecHHHHHHHhcCCceEeecC
Confidence 68999999999999999999999999999999999999999988 6799999999999999999999999999999
Q ss_pred ceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHH
Q 047202 81 RTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQ 160 (735)
Q Consensus 81 r~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (735)
|+|||+++|+....
T Consensus 225 R~fPVei~y~~~p~------------------------------------------------------------------ 238 (674)
T KOG0922|consen 225 RTFPVEILYLKEPT------------------------------------------------------------------ 238 (674)
T ss_pred CCCceeEEeccCCc------------------------------------------------------------------
Confidence 99999999985310
Q ss_pred HHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhcc-CCCCCcEEEEecCCCCHHHHHH
Q 047202 161 TRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRF-GGPSSDWLLALHSSVASVDQKK 239 (735)
Q Consensus 161 ~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~-~~~~~~~i~~LHs~l~~~eq~~ 239 (735)
.+.++ .....+..||.++++|+|||||+|++||+.+++.|.+.... .......++|+||+||.++|.+
T Consensus 239 ---------~dYv~--a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~r 307 (674)
T KOG0922|consen 239 ---------ADYVD--AALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSR 307 (674)
T ss_pred ---------hhhHH--HHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhc
Confidence 01111 12346678898999999999999999999999999765322 1111236899999999999999
Q ss_pred hcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEce
Q 047202 240 VFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLY 319 (735)
Q Consensus 240 vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~ 319 (735)
||.++|+|.||||+||||||||||||+|+||||+|++|++.|||.+++++|..+|||||+|.||+|||||++||+|||||
T Consensus 308 vF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLY 387 (674)
T KOG0922|consen 308 VFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLY 387 (674)
T ss_pred cccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCH-hhhhh
Q 047202 320 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTP-LGHHL 398 (735)
Q Consensus 320 t~~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~-lG~~l 398 (735)
|+++|+. |++.++|||+|++|...+|++|++|++|+..| +|++||+++++..|++.|..+||||++|.||. +|+.|
T Consensus 388 te~~~~~-~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F--~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~m 464 (674)
T KOG0922|consen 388 TESAYDK-MPLQTVPEIQRVNLSSAVLQLKALGINDPLRF--PFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQM 464 (674)
T ss_pred eHHHHhh-cccCCCCceeeechHHHHHHHHhcCCCCcccC--CCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhh
Confidence 9999976 78999999999999999999999999999999 99999999999999999999999999999996 99999
Q ss_pred ccCCCchHHHHHHHhhcccCChhHHHHHHhhhccCCCcccCcchhHH-HHHHHHHHhhhhhccCCCCCCCCCCCcHHHHH
Q 047202 399 AKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQN-VERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 477 (735)
Q Consensus 399 ~~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~~f~~~~~~~~~-~~~~k~~~~~~~~~~~~~~~~~~~~sDhl~~l 477 (735)
+.||++|.++|||+.+..+||.+++++|||+||++++|..|.+.+.+ +++.|.+|.+ .+|||++++
T Consensus 465 a~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~-------------~eGDh~tlL 531 (674)
T KOG0922|consen 465 AELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFAN-------------PEGDHLTLL 531 (674)
T ss_pred hhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhcC-------------cccCHHHHH
Confidence 99999999999999999999999999999999999999999988776 8888888842 778999999
Q ss_pred HHHHHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCccccccccccc
Q 047202 478 VAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDESQMFN 557 (735)
Q Consensus 478 ~~y~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~~~~~n 557 (735)
++|+.|.+ .+ ...+||++|||+.+.|+.+.++|.||.+++...++.. .++
T Consensus 532 ~vy~~~~~----~~--~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~---~s~--------------------- 581 (674)
T KOG0922|consen 532 NVYESWKE----NG--TSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPV---SSC--------------------- 581 (674)
T ss_pred HHHHHHHh----cC--ChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCc---cCC---------------------
Confidence 99999975 22 4578999999999999999999999999998777632 111
Q ss_pred ccCCcHHHHHHHHHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCcccccccCCCCeEEEEe
Q 047202 558 MYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLE 637 (735)
Q Consensus 558 ~~s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~lvy~e 637 (735)
..+.+.|+.|||+|||.|+|+++.. .+ +.+..+...|+|||||+++..+ ++|++|+|
T Consensus 582 --~~d~~~i~k~l~aGff~N~A~~~~~-----------------~~-Yrti~~~~~v~IHPSS~l~~~~---p~~viy~e 638 (674)
T KOG0922|consen 582 --GGDMEKIRKCLCAGFFRNVAERDYQ-----------------DG-YRTIRGGQPVYIHPSSVLFRRK---PEWVIYHE 638 (674)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHhhcC-----------------CC-eEEccCCcEEEEechHHhhcCC---CCEEEEEE
Confidence 2356789999999999999997621 12 2223345689999999999764 89999999
Q ss_pred ecccCcceeecCCCcChHHHHHhcCc
Q 047202 638 KVETNKVFLRDTTIVSPFSILLFGGS 663 (735)
Q Consensus 638 ~~~t~k~~lr~~T~V~p~~llLfgg~ 663 (735)
++.|+|.|||+||.|.+.||..++.+
T Consensus 639 l~~Ttk~Y~r~Vt~i~~~wL~e~ap~ 664 (674)
T KOG0922|consen 639 LLQTTKEYMRNVTAIDPEWLLELAPH 664 (674)
T ss_pred EeecchHhHhheeecCHHHHHHhCch
Confidence 99999999999999999999988754
No 3
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.9e-118 Score=956.56 Aligned_cols=514 Identities=32% Similarity=0.536 Sum_probs=461.8
Q ss_pred CcccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCC
Q 047202 1 MNFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEG 80 (735)
Q Consensus 1 ~~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~g 80 (735)
+|+|....|..|.+||+||+||||||++|||+|+|+||.++++|. +||+|+||||||+++|++|||+||..+|||
T Consensus 455 iLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRr-----dlKliVtSATm~a~kf~nfFgn~p~f~IpG 529 (1042)
T KOG0924|consen 455 ILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR-----DLKLIVTSATMDAQKFSNFFGNCPQFTIPG 529 (1042)
T ss_pred hHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc-----cceEEEeeccccHHHHHHHhCCCceeeecC
Confidence 478999999999999999999999999999999999999999884 799999999999999999999999999999
Q ss_pred ceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHH
Q 047202 81 RTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQ 160 (735)
Q Consensus 81 r~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (735)
|+|||++.|.....+ .|.+.
T Consensus 530 RTyPV~~~~~k~p~e------------------------------------------------------------DYVea 549 (1042)
T KOG0924|consen 530 RTYPVEIMYTKTPVE------------------------------------------------------------DYVEA 549 (1042)
T ss_pred CccceEEEeccCchH------------------------------------------------------------HHHHH
Confidence 999999999753210 01111
Q ss_pred HHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhh---ccCCCCCcEEEEecCCCCHHHH
Q 047202 161 TRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASY---RFGGPSSDWLLALHSSVASVDQ 237 (735)
Q Consensus 161 ~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~---~~~~~~~~~i~~LHs~l~~~eq 237 (735)
+ +.-...||...++|+||||++|+++|+..+..+.... .......+.|+|++|+||.+-|
T Consensus 550 a-----------------vkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ 612 (1042)
T KOG0924|consen 550 A-----------------VKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQ 612 (1042)
T ss_pred H-----------------HhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhh
Confidence 0 1112246677789999999999999999887776532 1122236889999999999999
Q ss_pred HHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEE
Q 047202 238 KKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYS 317 (735)
Q Consensus 238 ~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~r 317 (735)
.++|++.+.|.|||||||||||||+|||+|.||||||++|.+.|+|..|+..|+.+|||||+|.||+|||||++||.|||
T Consensus 613 ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYR 692 (1042)
T KOG0924|consen 613 AKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYR 692 (1042)
T ss_pred hhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceehhhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhhhh
Q 047202 318 LYTRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHH 397 (735)
Q Consensus 318 L~t~~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG~~ 397 (735)
|||+..|.+.|.+.++|||+|+.|.+++|++|++|++++..| +|+|||+.+.+.+|+..|..+|||+..|.|||+|+.
T Consensus 693 lYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~F--dFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~ 770 (1042)
T KOG0924|consen 693 LYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKF--DFMDPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRK 770 (1042)
T ss_pred ehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCC--CcCCCCHHHHHHHHHHHHHHhhccccCCccchhhHH
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred hccCCCchHHHHHHHhhcccCChhHHHHHHhhhccCCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCcHHHHH
Q 047202 398 LAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 477 (735)
Q Consensus 398 l~~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sDhl~~l 477 (735)
|++||+||.++|||+.++.+||.+++|+|++|||+...|++|.+..++++.+|.+|++ ..|||||+|
T Consensus 771 MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~-------------~~sDhLTlL 837 (1042)
T KOG0924|consen 771 MVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQV-------------PESDHLTLL 837 (1042)
T ss_pred hhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcC-------------CCCchhhHH
Confidence 9999999999999999999999999999999999999999999998999999999964 889999999
Q ss_pred HHHHHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCccccccccccc
Q 047202 478 VAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDESQMFN 557 (735)
Q Consensus 478 ~~y~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~~~~~n 557 (735)
|+|++|.+. +....||++|||+.++|+.++++|.||+++|++.++ |. +
T Consensus 838 NVf~qw~~~------~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~---~l-----------------------~ 885 (1042)
T KOG0924|consen 838 NVFNQWRKN------KYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKL---PL-----------------------I 885 (1042)
T ss_pred HHHHHHHhc------CCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCC---Cc-----------------------c
Confidence 999999752 235689999999999999999999999999999886 21 1
Q ss_pred ccCCcHHHHHHHHHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCcccccccCCCCeEEEEe
Q 047202 558 MYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLE 637 (735)
Q Consensus 558 ~~s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~lvy~e 637 (735)
. +.+|++|+.|||+|+|-|+|++.. .+.++...+..++++||||+++.. +.|+|+||||
T Consensus 886 S-~~dwdivrKCIcs~~fhn~Arlkg------------------~g~YV~~~tg~~c~lHPsS~L~g~--y~p~Yivyhe 944 (1042)
T KOG0924|consen 886 S-SDDWDIVRKCICSAYFHNAARLKG------------------IGEYVNLSTGIPCHLHPSSVLHGL--YTPDYIVYHE 944 (1042)
T ss_pred c-CchHHHHHHHHHHHHHHHHHHhcc------------------CceEEEccCCcceeecchHhhhcC--CCCCeeeehH
Confidence 1 258999999999999999998732 122233334568999999999975 6799999999
Q ss_pred ecccCcceeecCCCcChHHHHHhcCce
Q 047202 638 KVETNKVFLRDTTIVSPFSILLFGGSI 664 (735)
Q Consensus 638 ~~~t~k~~lr~~T~V~p~~llLfgg~l 664 (735)
++.|++.||+.||.|+|.||+=.|+-.
T Consensus 945 l~~T~keym~cvT~v~~~wl~E~gp~~ 971 (1042)
T KOG0924|consen 945 LLMTTKEYMQCVTSVSPEWLAELGPMF 971 (1042)
T ss_pred HHHhHHHHHHHHhhCCHHHHHHhCcee
Confidence 999999999999999999999998764
No 4
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-115 Score=932.75 Aligned_cols=513 Identities=33% Similarity=0.512 Sum_probs=453.8
Q ss_pred CcccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCC
Q 047202 1 MNFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEG 80 (735)
Q Consensus 1 ~~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~g 80 (735)
||+|.+++||+|.+||+|||||||||++.||+|++++|++.+-| |+|||++||||+|+++|+.||+++|+..+||
T Consensus 365 mLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R-----pdLKllIsSAT~DAekFS~fFDdapIF~iPG 439 (902)
T KOG0923|consen 365 MLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR-----PDLKLLISSATMDAEKFSAFFDDAPIFRIPG 439 (902)
T ss_pred hHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC-----CcceEEeeccccCHHHHHHhccCCcEEeccC
Confidence 89999999999999999999999999999999999999999888 7899999999999999999999999999999
Q ss_pred ceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHH
Q 047202 81 RTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQ 160 (735)
Q Consensus 81 r~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (735)
|.|||+++|-..+-
T Consensus 440 RRyPVdi~Yt~~PE------------------------------------------------------------------ 453 (902)
T KOG0923|consen 440 RRYPVDIFYTKAPE------------------------------------------------------------------ 453 (902)
T ss_pred cccceeeecccCCc------------------------------------------------------------------
Confidence 99999999965310
Q ss_pred HHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhcc-CC-CCCcEEEEecCCCCHHHHH
Q 047202 161 TRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRF-GG-PSSDWLLALHSSVASVDQK 238 (735)
Q Consensus 161 ~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~-~~-~~~~~i~~LHs~l~~~eq~ 238 (735)
.+.+| .....+..||.+.+.|+|||||+|++||+.+.+.|.....- +. ...+.|+|+|++||.+.|.
T Consensus 454 ---------AdYld--Aai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQa 522 (902)
T KOG0923|consen 454 ---------ADYLD--AAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQA 522 (902)
T ss_pred ---------hhHHH--HHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHH
Confidence 01111 11234556788889999999999999999998888654322 22 2245689999999999999
Q ss_pred HhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEc
Q 047202 239 KVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSL 318 (735)
Q Consensus 239 ~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL 318 (735)
+||++.|+|.|||||||||||||||||||.||||+|++|++.|+|++||++|..+|||||||.||+|||||++||.||||
T Consensus 523 kIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRL 602 (902)
T KOG0923|consen 523 KIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRL 602 (902)
T ss_pred hhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhhhhh
Q 047202 319 YTRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHL 398 (735)
Q Consensus 319 ~t~~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG~~l 398 (735)
||...|.+.+++.+.|||+|++|.+++|.+|+||+.++.+| +|++||+.+++..|++.|+.+|||+..|+||.+|+.|
T Consensus 603 Yt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~F--dFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrM 680 (902)
T KOG0923|consen 603 YTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHF--DFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRM 680 (902)
T ss_pred echhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhccc--ccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhh
Confidence 99999999889999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHhhcccCChhHHHHHHhhhcc-CCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCcHHHHH
Q 047202 399 AKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSY-KSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLM 477 (735)
Q Consensus 399 ~~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~-~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sDhl~~l 477 (735)
++||+||+++|||+.+...+|.+++++||||||+ .++|..|.+....++.++..|. ...|||++++
T Consensus 681 aEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~-------------~~~gDhi~~L 747 (902)
T KOG0923|consen 681 AEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFE-------------EPVGDHIVLL 747 (902)
T ss_pred hhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccC-------------CCCcchhhhh
Confidence 9999999999999999999999999999999996 4699999987767777776662 3689999999
Q ss_pred HHHHHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCccccccccccc
Q 047202 478 VAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDESQMFN 557 (735)
Q Consensus 478 ~~y~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~~~~~n 557 (735)
++|+.|.+. +...+||.+||+++.+|..++++|.||..+|...++....
T Consensus 748 ~vyn~w~es------~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s------------------------- 796 (902)
T KOG0923|consen 748 NVYNQWKES------KYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSS------------------------- 796 (902)
T ss_pred HHHHHHhhc------chhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccC-------------------------
Confidence 999999752 3468999999999999999999999999999876642210
Q ss_pred ccCCcHHHHHHHHHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCcccccccCCCCeEEEEe
Q 047202 558 MYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLE 637 (735)
Q Consensus 558 ~~s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~lvy~e 637 (735)
+.+....|+.++.+|||||+|++..+ +++........|++||.|+++.. .|.||+||+
T Consensus 797 -~~~~~~~irk~i~aGff~h~a~l~~~------------------g~y~tvk~~~tv~~hp~S~l~~~---~P~wvvy~e 854 (902)
T KOG0923|consen 797 -NQNDLDKIRKAITAGFFYHTAKLSKG------------------GHYRTVKHPQTVSIHPNSGLFEQ---LPRWVVYHE 854 (902)
T ss_pred -ChHHHHHHHHHHhccccccceeccCC------------------CcceeeccCcceeecCccccccc---CCceEEEee
Confidence 01145568899999999999997542 12223334456999999999864 469999999
Q ss_pred ecccCcceeecCCCcChHHHHHhcCc
Q 047202 638 KVETNKVFLRDTTIVSPFSILLFGGS 663 (735)
Q Consensus 638 ~~~t~k~~lr~~T~V~p~~llLfgg~ 663 (735)
+|-|+|.|||.++.+.+.||+=.+.+
T Consensus 855 Lv~tske~mr~~~e~e~~Wlie~aph 880 (902)
T KOG0923|consen 855 LVLTSKEFMRQVIEIEEEWLIEVAPH 880 (902)
T ss_pred hhcChHHHHHHHHhhhhhHHHHhchh
Confidence 99999999999999999999877644
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-110 Score=873.29 Aligned_cols=511 Identities=32% Similarity=0.525 Sum_probs=454.2
Q ss_pred CcccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCC
Q 047202 1 MNFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEG 80 (735)
Q Consensus 1 ~~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~g 80 (735)
||+|+.++||.|..|++||+||+|||++-||+|+|+||+++..| |+||+|+||||+++++|++||+++|+++|||
T Consensus 146 mLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-----pdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg 220 (699)
T KOG0925|consen 146 MLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-----PDLKLVVMSATLDAEKFQRYFGNAPLLAVPG 220 (699)
T ss_pred HHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-----CCceEEEeecccchHHHHHHhCCCCeeecCC
Confidence 89999999999999999999999999999999999999999877 7899999999999999999999999999999
Q ss_pred ceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHH
Q 047202 81 RTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQ 160 (735)
Q Consensus 81 r~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (735)
+|||+.+|..++- .+|
T Consensus 221 -~~PvEi~Yt~e~e------------------------------------------------------------rDy--- 236 (699)
T KOG0925|consen 221 -THPVEIFYTPEPE------------------------------------------------------------RDY--- 236 (699)
T ss_pred -CCceEEEecCCCC------------------------------------------------------------hhH---
Confidence 8999999976420 001
Q ss_pred HHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhh-cc-CCCCCcEEEEecCCCCHHHHH
Q 047202 161 TRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASY-RF-GGPSSDWLLALHSSVASVDQK 238 (735)
Q Consensus 161 ~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~-~~-~~~~~~~i~~LHs~l~~~eq~ 238 (735)
.+....++..||..+++|+|||||+|.+||+.+++.+.... .. .+.....|+||| +.+|+
T Consensus 237 --------------lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq 298 (699)
T KOG0925|consen 237 --------------LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQ 298 (699)
T ss_pred --------------HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhc
Confidence 12344667788888899999999999999999999987432 11 223457899999 78889
Q ss_pred HhcCCCCCC-----ccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCc
Q 047202 239 KVFLRPPEK-----IRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPG 313 (735)
Q Consensus 239 ~vf~~~~~g-----~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G 313 (735)
++|++.|.. .|||||+|||||||+|||+|+||||.|+.|++.|||+.+.++|...|||||+|.||+|||||++||
T Consensus 299 ~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pG 378 (699)
T KOG0925|consen 299 RIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPG 378 (699)
T ss_pred cccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCC
Confidence 999998743 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEceehhhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCH
Q 047202 314 ICYSLYTRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTP 393 (735)
Q Consensus 314 ~c~rL~t~~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~ 393 (735)
.||||||++.|++.|.+.+.|||+|..|.+++|++|.+|+.++.+| +|++||.++++.+|++.|..++|+|++|+||+
T Consensus 379 kcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhf--dfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~ 456 (699)
T KOG0925|consen 379 KCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHF--DFMDPPAPETLMRALEVLNYLAALDDDGNLTS 456 (699)
T ss_pred ceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCC--cCCCCCChHHHHHHHHHhhhhhhhCCCcccch
Confidence 9999999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhhhhccCCCchHHHHHHHhhcccCChhHHHHHHhhhccCCCcccCc-chhHHHHHHHHHHhhhhhccCCCCCCCCCCCc
Q 047202 394 LGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPK-DEKQNVERAKLALLTDKLEGLSDSNDSSTQSD 472 (735)
Q Consensus 394 lG~~l~~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~~f~~~~-~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sD 472 (735)
+|..|++||+||.++|||+.++.|.|.+++++|+||||+++.|++|. +.++.++.+|+.|.| ..||
T Consensus 457 lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH-------------~dGD 523 (699)
T KOG0925|consen 457 LGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAH-------------IDGD 523 (699)
T ss_pred hhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhcc-------------CCcc
Confidence 99999999999999999999999999999999999999999999998 677888999999965 8899
Q ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCcccccc
Q 047202 473 HLVLMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDE 552 (735)
Q Consensus 473 hl~~l~~y~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~ 552 (735)
|+|++|+|.+|.+. + ...+||++||||+++|+++..+|+||.++|....+ |.....+|.+
T Consensus 524 HlTLlnVYhAfkq~----~--~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L---~~~st~F~S~----------- 583 (699)
T KOG0925|consen 524 HLTLLNVYHAFKQN----N--EDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNL---PLCSTDFGSR----------- 583 (699)
T ss_pred hHHHHHHHHHHHhc----C--CChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcC---cccCCCCCCh-----------
Confidence 99999999999752 2 24689999999999999999999999999998765 3322222221
Q ss_pred cccccccCCcHHHHHHHHHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCcccccccCCCCe
Q 047202 553 SQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPF 632 (735)
Q Consensus 553 ~~~~n~~s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~ 632 (735)
++.--|+.+|.+|||.+||+..++ +++.+.+.++.|++|||+++.+ +|+|
T Consensus 584 --------~y~~nirKALvsgyFmqVA~~~~~------------------~~Ylt~kdnqvvqLhps~~l~~----~PeW 633 (699)
T KOG0925|consen 584 --------DYYVNIRKALVSGYFMQVAHLERG------------------GHYLTVKDNQVVQLHPSTCLDH----KPEW 633 (699)
T ss_pred --------hHHHHHHHHHHHHHHHHHHhhccC------------------CceEEEecCceEEeccccccCC----CCCe
Confidence 123347777899999999997553 1334445678899999999974 5899
Q ss_pred EEEEeecccCcceeecCCCcChHHHHHhcCc
Q 047202 633 LVFLEKVETNKVFLRDTTIVSPFSILLFGGS 663 (735)
Q Consensus 633 lvy~e~~~t~k~~lr~~T~V~p~~llLfgg~ 663 (735)
++|+|.+-|+|.|+|.||.|.|.|++-.+..
T Consensus 634 VlyneFvlt~~N~ir~vt~I~pewlv~laP~ 664 (699)
T KOG0925|consen 634 VLYNEFVLTTKNFIRTVTDIRPEWLVELAPQ 664 (699)
T ss_pred EEEeeEEeeccceeeeecccCHHHHHHhchh
Confidence 9999999999999999999999999876643
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=5.1e-102 Score=922.85 Aligned_cols=518 Identities=30% Similarity=0.459 Sum_probs=448.7
Q ss_pred CcccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCC
Q 047202 1 MNFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEG 80 (735)
Q Consensus 1 ~~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~g 80 (735)
++++.++.|+.|++|++|||||||||++++||++++||+++.+| |++|+|+||||++.+.|++||+++|+|.|+|
T Consensus 173 ~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-----pdlKvILmSATid~e~fs~~F~~apvI~V~G 247 (1294)
T PRK11131 173 ILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-----PDLKVIITSATIDPERFSRHFNNAPIIEVSG 247 (1294)
T ss_pred HHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcC-----CCceEEEeeCCCCHHHHHHHcCCCCEEEEcC
Confidence 36788899999999999999999999999999999999999776 6799999999999999999999999999999
Q ss_pred ceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHH
Q 047202 81 RTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQ 160 (735)
Q Consensus 81 r~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (735)
++|||+++|...... ++ ..
T Consensus 248 r~~pVei~y~p~~~~---------------------------------------~~----------------------~~ 266 (1294)
T PRK11131 248 RTYPVEVRYRPIVEE---------------------------------------AD----------------------DT 266 (1294)
T ss_pred ccccceEEEeecccc---------------------------------------cc----------------------hh
Confidence 999999999742100 00 00
Q ss_pred HHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHh
Q 047202 161 TRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKV 240 (735)
Q Consensus 161 ~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~v 240 (735)
..+. ...+...+..++. ..+|+|||||||.+||+.+++.|.... .+...|+||||+|++++|.++
T Consensus 267 ~~d~----------l~~ll~~V~~l~~-~~~GdILVFLpg~~EIe~lae~L~~~~----~~~~~VlpLhg~Ls~~eQ~~V 331 (1294)
T PRK11131 267 ERDQ----------LQAIFDAVDELGR-EGPGDILIFMSGEREIRDTADALNKLN----LRHTEILPLYARLSNSEQNRV 331 (1294)
T ss_pred hHHH----------HHHHHHHHHHHhc-CCCCCEEEEcCCHHHHHHHHHHHHhcC----CCcceEeecccCCCHHHHHHH
Confidence 0000 0112233334433 467999999999999999999997641 223569999999999999999
Q ss_pred cCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEcee
Q 047202 241 FLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYT 320 (735)
Q Consensus 241 f~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t 320 (735)
|++ .|.+||||||||||||||||||+||||+|++|+++||+.++++.|...||||++|.||+|||||+++|+||||||
T Consensus 332 f~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyt 409 (1294)
T PRK11131 332 FQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYS 409 (1294)
T ss_pred hcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCC
Confidence 986 578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCC-----CCCCHhh
Q 047202 321 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGD-----EELTPLG 395 (735)
Q Consensus 321 ~~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~-----~~lT~lG 395 (735)
+++|+. +++++.|||+|++|.++||++|++|++++..| +|++||+.++|.+|++.|..+||||.+ ++||++|
T Consensus 410 e~d~~~-~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F--~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG 486 (1294)
T PRK11131 410 EDDFLS-RPEFTDPEILRTNLASVILQMTALGLGDIAAF--PFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLG 486 (1294)
T ss_pred HHHHHh-hhcccCCccccCCHHHHHHHHHHcCCCCccee--eCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHH
Confidence 999988 68999999999999999999999999999999 899999999999999999999999864 5799999
Q ss_pred hhhccCCCchHHHHHHHhhcccCChhHHHHHHhhhccCCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCcHHH
Q 047202 396 HHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLV 475 (735)
Q Consensus 396 ~~l~~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sDhl~ 475 (735)
+.|++||+||++||||+.|+.|||++++++|||+||+++||..|.+.++.++.++..|. +..|||++
T Consensus 487 ~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~-------------~~~sD~lt 553 (1294)
T PRK11131 487 RQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFA-------------DKESDFLA 553 (1294)
T ss_pred HHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhC-------------CCCCCHHH
Confidence 99999999999999999999999999999999999999999999998888888888884 37899999
Q ss_pred HHHHHHHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCccccccccc
Q 047202 476 LMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDESQM 555 (735)
Q Consensus 476 ~l~~y~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~~~~ 555 (735)
++|+|+.|.+.....+....++||++||||+.+|+++.++|.||.+++++.|+...
T Consensus 554 ~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~------------------------ 609 (1294)
T PRK11131 554 FVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVN------------------------ 609 (1294)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCC------------------------
Confidence 99999999864333333455789999999999999999999999999999987311
Q ss_pred ccccCCcHHHHHHHHHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCcccccccCCCCeEEE
Q 047202 556 FNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVF 635 (735)
Q Consensus 556 ~n~~s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~lvy 635 (735)
.+..+.+.|+.+||+|||+|||+.+.+ ...+... .+..++|||+|++++. +|+||+|
T Consensus 610 --~~~~~~~~i~~all~G~~~nva~~~~~-----------------~~~y~~~-~~~~~~ihP~S~L~~~---~p~wvv~ 666 (1294)
T PRK11131 610 --SEPAEYREIHTALLTGLLSHIGMKDAE-----------------KQEYTGA-RNARFSIFPGSGLFKK---PPKWVMV 666 (1294)
T ss_pred --CCcccHHHHHHHHHhhcHHHHeeccCC-----------------CCeEEcc-CCcEEEEcCCccccCC---CCCEEEE
Confidence 112356789999999999999986432 0011111 2357999999999863 5899999
Q ss_pred EeecccCcceeecCCCcChHHHHHhcCce
Q 047202 636 LEKVETNKVFLRDTTIVSPFSILLFGGSI 664 (735)
Q Consensus 636 ~e~~~t~k~~lr~~T~V~p~~llLfgg~l 664 (735)
+|+++|+|.|||+||.|.|.|+.-+++++
T Consensus 667 ~Elv~Tsr~y~r~va~I~p~Wl~~~a~~l 695 (1294)
T PRK11131 667 AELVETSRLWGRIAARIEPEWIEPLAQHL 695 (1294)
T ss_pred EeeeccChhhhhhhcccCHHHHHHHHHHh
Confidence 99999999999999999999999988765
No 7
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1e-97 Score=889.66 Aligned_cols=516 Identities=32% Similarity=0.487 Sum_probs=446.9
Q ss_pred CcccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCC
Q 047202 1 MNFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEG 80 (735)
Q Consensus 1 ~~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~g 80 (735)
+++++++.||.|++|++|||||||||++++|++|+++|+++.+| +++|+|+||||+|.+.|++||+++|+|.++|
T Consensus 166 iLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-----pdLKlIlmSATld~~~fa~~F~~apvI~V~G 240 (1283)
T TIGR01967 166 ILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-----PDLKIIITSATIDPERFSRHFNNAPIIEVSG 240 (1283)
T ss_pred HHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-----CCCeEEEEeCCcCHHHHHHHhcCCCEEEECC
Confidence 47889999999999999999999999999999999999998777 6899999999999999999999999999999
Q ss_pred ceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHH
Q 047202 81 RTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQ 160 (735)
Q Consensus 81 r~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (735)
++|||+.+|...... .+
T Consensus 241 r~~PVev~Y~~~~~~---------------------------------------~~------------------------ 257 (1283)
T TIGR01967 241 RTYPVEVRYRPLVEE---------------------------------------QE------------------------ 257 (1283)
T ss_pred CcccceeEEeccccc---------------------------------------cc------------------------
Confidence 999999998642000 00
Q ss_pred HHHHhhhccccccc-hHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHH
Q 047202 161 TRQNLKRLNEDVID-YDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKK 239 (735)
Q Consensus 161 ~~~~~~~~~~~~i~-~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~ 239 (735)
....+ .+.+..++..+... .+|+|||||||..||+.+++.|.... ..++.|+||||+|++++|++
T Consensus 258 ---------~~~~~~~~~i~~~I~~l~~~-~~GdILVFLpg~~EI~~l~~~L~~~~----~~~~~VlpLhg~Ls~~eQ~~ 323 (1283)
T TIGR01967 258 ---------DDDLDQLEAILDAVDELFAE-GPGDILIFLPGEREIRDAAEILRKRN----LRHTEILPLYARLSNKEQQR 323 (1283)
T ss_pred ---------chhhhHHHHHHHHHHHHHhh-CCCCEEEeCCCHHHHHHHHHHHHhcC----CCCcEEEeccCCCCHHHHHH
Confidence 00000 11233445555443 57999999999999999999997542 12467999999999999999
Q ss_pred hcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEce
Q 047202 240 VFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLY 319 (735)
Q Consensus 240 vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~ 319 (735)
+|.++ +.|||||||||||||||||||+||||+|++|.++||+.++++.|.+.|||||+|.||+|||||+++|+|||||
T Consensus 324 vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLy 401 (1283)
T TIGR01967 324 VFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLY 401 (1283)
T ss_pred HhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEec
Confidence 99875 4589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCC---CCCHhhh
Q 047202 320 TRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE---ELTPLGH 396 (735)
Q Consensus 320 t~~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~---~lT~lG~ 396 (735)
|+++|+. +++++.|||+|++|.++||++|++|++++.+| .|++||+..+|..|++.|..+||||.++ +||++|+
T Consensus 402 te~~~~~-~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f--~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr 478 (1283)
T TIGR01967 402 SEEDFNS-RPEFTDPEILRTNLASVILQMLALRLGDIAAF--PFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGR 478 (1283)
T ss_pred CHHHHHh-hhhccCcccccccHHHHHHHHHhcCCCCcccc--cCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHH
Confidence 9999988 68899999999999999999999999999998 8999999999999999999999999988 7999999
Q ss_pred hhccCCCchHHHHHHHhhcccCChhHHHHHHhhhccCCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCcHHHH
Q 047202 397 HLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVL 476 (735)
Q Consensus 397 ~l~~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sDhl~~ 476 (735)
.|++||+||++||||+.|+.+||++++++|||+||+++||..|.+.++.++.++..|. +..|||+++
T Consensus 479 ~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~-------------~~~sD~l~~ 545 (1283)
T TIGR01967 479 QLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFK-------------DPRSDFLSR 545 (1283)
T ss_pred HHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhc-------------CCCCCHHHH
Confidence 9999999999999999999999999999999999999999999998888888888874 368999999
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCcccccccccc
Q 047202 477 MVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDESQMF 556 (735)
Q Consensus 477 l~~y~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~~~~~ 556 (735)
+++|+.|.+.....+....++||++||||+.+|+++.++++||.+++++.|+...
T Consensus 546 L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~------------------------- 600 (1283)
T TIGR01967 546 VNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLN------------------------- 600 (1283)
T ss_pred HHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcC-------------------------
Confidence 9999999764333333456799999999999999999999999999998886211
Q ss_pred cccCCcHHHHHHHHHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCcccccccCCCCeEEEE
Q 047202 557 NMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFL 636 (735)
Q Consensus 557 n~~s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~lvy~ 636 (735)
.+..+...++.+||+|||+|||+.... + .+.... ...++|||+|++++. +++||+|+
T Consensus 601 -~~~~~~~~i~~~l~~g~~~~iA~~~~~---~---------------~y~~~~-g~~~~ihP~S~L~~~---~p~wvv~~ 657 (1283)
T TIGR01967 601 -EEPADYDAIHKALLSGLLSQIGMKDEK---H---------------EYDGAR-GRKFHIFPGSPLFKK---PPKWVMAA 657 (1283)
T ss_pred -CCCccHHHHHHHHHHhhHHHHheeCCC---C---------------cEEecC-CcEEEECCCccccCC---CCCEEEEe
Confidence 011234458889999999999986421 0 111112 246999999999863 57999999
Q ss_pred eecccCcceeecCCCcChHHHHHhcCce
Q 047202 637 EKVETNKVFLRDTTIVSPFSILLFGGSI 664 (735)
Q Consensus 637 e~~~t~k~~lr~~T~V~p~~llLfgg~l 664 (735)
|+++|++.||+.+|.|+|.|+..+++++
T Consensus 658 elv~t~~~~ir~~a~I~p~wl~~~~~~~ 685 (1283)
T TIGR01967 658 ELVETSKLYARLVAKIEPEWVEPVAGHL 685 (1283)
T ss_pred eecccchheEeeeccCCHHHHHHHhHHH
Confidence 9999999999999999999998888653
No 8
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.1e-98 Score=862.41 Aligned_cols=539 Identities=32% Similarity=0.473 Sum_probs=441.4
Q ss_pred CcccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCC
Q 047202 1 MNFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEG 80 (735)
Q Consensus 1 ~~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~g 80 (735)
||+|+++.||.|++|++|||||+|||++++|++|++||+++..|. +++|||+||||+|+++|++||++||+++|+|
T Consensus 149 iLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr----~DLKiIimSATld~~rfs~~f~~apvi~i~G 224 (845)
T COG1643 149 ILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR----DDLKLIIMSATLDAERFSAYFGNAPVIEIEG 224 (845)
T ss_pred HHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC----CCceEEEEecccCHHHHHHHcCCCCEEEecC
Confidence 588999999999999999999999999999999999999998874 5799999999999999999999999999999
Q ss_pred ceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHH
Q 047202 81 RTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQ 160 (735)
Q Consensus 81 r~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (735)
|+|||+++|.++.. .+ |
T Consensus 225 R~fPVei~Y~~~~~-----------------------------------------~d-------------------~--- 241 (845)
T COG1643 225 RTYPVEIRYLPEAE-----------------------------------------AD-------------------Y--- 241 (845)
T ss_pred CccceEEEecCCCC-----------------------------------------cc-------------------h---
Confidence 99999999976420 00 0
Q ss_pred HHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHh
Q 047202 161 TRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKV 240 (735)
Q Consensus 161 ~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~v 240 (735)
.++ +.+.. ...++...++|+|||||||.+||+.+++.|.+. .+. ..+.|+||||.|+.++|.+|
T Consensus 242 -----------~l~-~ai~~-~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~-~l~--~~~~i~PLy~~L~~~eQ~rv 305 (845)
T COG1643 242 -----------ILL-DAIVA-AVDIHLREGSGSILVFLPGQREIERTAEWLEKA-ELG--DDLEILPLYGALSAEEQVRV 305 (845)
T ss_pred -----------hHH-HHHHH-HHHHhccCCCCCEEEECCcHHHHHHHHHHHHhc-ccc--CCcEEeeccccCCHHHHHhh
Confidence 000 01111 223445567999999999999999999999872 111 35789999999999999999
Q ss_pred cCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEcee
Q 047202 241 FLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYT 320 (735)
Q Consensus 241 f~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t 320 (735)
|++.|.|+||||+||||||||||||||+||||||++|+++||+.+++++|.++|||||||.||+|||||++||+||||||
T Consensus 306 F~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLys 385 (845)
T COG1643 306 FEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYS 385 (845)
T ss_pred cCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhcCCCCCCcccccchHHHHHHHHHcCCC-chhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhhhhhc
Q 047202 321 RHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLG-RIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLA 399 (735)
Q Consensus 321 ~~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~-~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG~~l~ 399 (735)
+++|+. +++++.|||+|++|..++|+++++|++ ++..| .|+|||+..++..|++.|..+||||.+|.||++|+.|+
T Consensus 386 e~~~~~-~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f--~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms 462 (845)
T COG1643 386 EEDFLA-FPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPF--PFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMS 462 (845)
T ss_pred HHHHHh-cccCCChhhhhcchHHHHHHHHhcCCCCCcccC--ccCCCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHH
Confidence 999995 799999999999999999999999996 99998 99999999999999999999999999999999999999
Q ss_pred cCCCchHHHHHHHhhcccCChhHHHHHHhhhccCC---CcccCcchhH---HHHHHHHHHhhhhhccCCCCCCCCCCCcH
Q 047202 400 KLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKS---PFIYPKDEKQ---NVERAKLALLTDKLEGLSDSNDSSTQSDH 473 (735)
Q Consensus 400 ~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~---~f~~~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~~~sDh 473 (735)
.||+||++|+||+.+..+||++++++|||+||.++ .|..+.+.+. ..+.++. +..++ ..+..+||
T Consensus 463 ~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~-l~~~~--------~~~~~~d~ 533 (845)
T COG1643 463 LLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKR-LKRRN--------AADPRGDH 533 (845)
T ss_pred hCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHHH-HHhcc--------CCCcchHH
Confidence 99999999999999999999999999999999998 6888776655 2332331 11110 13468999
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH-cCCccCCCCCcCCCCCCCCCCcccccc
Q 047202 474 LVLMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLAD-IGLINLPNKNQTGGKKKDDLDSWFSDE 552 (735)
Q Consensus 474 l~~l~~y~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~-~g~i~~~~~~~~~g~~~~~~~~~~~~~ 552 (735)
++++++|..|....++.|.....+||+.++++.++|.++..++.|++..... .|.+-.... .............
T Consensus 534 ~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 608 (845)
T COG1643 534 LLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAE-----IDEDEWAAQHLPE 608 (845)
T ss_pred HHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcc-----cCcchhhhhhhhh
Confidence 9999999999876544455567899999999999999999999998877766 444321100 0000000000000
Q ss_pred cccccccCCcHHHHHHHHHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCcccccccCCCCe
Q 047202 553 SQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPF 632 (735)
Q Consensus 553 ~~~~n~~s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~ 632 (735)
.... +. .|+.++.++++|++.|++..... ...+....+...|++||+|+... ...++|
T Consensus 609 ~~~~--~~-~~d~~~~~l~a~~~~~~~~~~~~-----------------~~~~~~~~~~~~v~~~~~~v~~~--~~~~~~ 666 (845)
T COG1643 609 HCYS--EP-IWDDIRGALAAGRKLNIAQLQLD-----------------GRPYVTLSDNTPVFAHPSSVRLG--LVLLEW 666 (845)
T ss_pred hhcc--ch-hHHHHhhhhhhheecceeeeecc-----------------ccccccCCCCceeEecchhHhhc--ccCcch
Confidence 0011 12 57889999999999999986432 00112233346899999997221 235799
Q ss_pred EEEEeecccCcceee-----------cCCCcChHHHHHhc
Q 047202 633 LVFLEKVETNKVFLR-----------DTTIVSPFSILLFG 661 (735)
Q Consensus 633 lvy~e~~~t~k~~lr-----------~~T~V~p~~llLfg 661 (735)
+.|++.++|++.|++ .++.+.+.||.=+.
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~wL~~~~ 706 (845)
T COG1643 667 IKYAEFLRTRKGYLREGRGERWPDVQTLIELLKLWLKEQV 706 (845)
T ss_pred HHHHHHHHHHHHHHhhcccccCcccchHhhhHHHhhhhhc
Confidence 999999999999999 36666666765443
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1e-96 Score=804.54 Aligned_cols=540 Identities=29% Similarity=0.435 Sum_probs=439.4
Q ss_pred CcccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhc-----cCCCCCcEEEEecCCCChHHHH---hhhCC
Q 047202 1 MNFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQS-----AHDTPKLKVILMSATVDSNLFS---RYFGD 72 (735)
Q Consensus 1 ~~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~-----~~~~~~lklIlmSAT~~~~~f~---~yF~~ 72 (735)
+|+|.|++|-.|+.||+|||||||||+++||+|+|+|.++++-|. +....+||+|+||||+.++.|+ ..|..
T Consensus 359 VLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi 438 (1172)
T KOG0926|consen 359 VLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPI 438 (1172)
T ss_pred HHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCC
Confidence 478999999999999999999999999999999999999988765 2345589999999999999996 56765
Q ss_pred -CCeEeeCCceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCC
Q 047202 73 -CPVITAEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDP 151 (735)
Q Consensus 73 -~pvi~i~gr~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (735)
+|+|.|+.|+|||.+||-... .+ .|
T Consensus 439 ~pPlikVdARQfPVsIHF~krT-----------------------------------------~~-----------DY-- 464 (1172)
T KOG0926|consen 439 PPPLIKVDARQFPVSIHFNKRT-----------------------------------------PD-----------DY-- 464 (1172)
T ss_pred CCceeeeecccCceEEEeccCC-----------------------------------------Cc-----------hH--
Confidence 689999999999999995320 00 00
Q ss_pred CCCCCccHHHHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhc--cC-----------
Q 047202 152 SDYGSYSEQTRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYR--FG----------- 218 (735)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~--~~----------- 218 (735)
+. .--.-.+.||+..++|+||||++|+.|++.++++|+..+. |+
T Consensus 465 ---------------------i~--eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~ 521 (1172)
T KOG0926|consen 465 ---------------------IA--EAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAF 521 (1172)
T ss_pred ---------------------HH--HHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhc
Confidence 00 0113357899999999999999999999999999975421 10
Q ss_pred -------------------------------------------------------------------------------C
Q 047202 219 -------------------------------------------------------------------------------G 219 (735)
Q Consensus 219 -------------------------------------------------------------------------------~ 219 (735)
.
T Consensus 522 ~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~ 601 (1172)
T KOG0926|consen 522 KELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFS 601 (1172)
T ss_pred cccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCC
Confidence 0
Q ss_pred CCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhh
Q 047202 220 PSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQAN 299 (735)
Q Consensus 220 ~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkas 299 (735)
..+++|+||||-|++++|.+||+.+|.|.|-+|||||+||||+|||+|+||||||++|++.||..+|++++...||||||
T Consensus 602 ~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkAS 681 (1172)
T KOG0926|consen 602 PGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKAS 681 (1172)
T ss_pred CCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccc
Confidence 12468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCcCCCCCCcEEEEceehhhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHH
Q 047202 300 ARQRRGRAGRVKPGICYSLYTRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVL 379 (735)
Q Consensus 300 a~QR~GRAGR~~~G~c~rL~t~~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L 379 (735)
|.||+|||||++||+||||||+..|++.+++|..|||++.|.++++||+|+|++.++.+| .|++||+..+++.|.+.|
T Consensus 682 adQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnF--PFPtpPd~~~L~~Aer~L 759 (1172)
T KOG0926|consen 682 ADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNF--PFPTPPDRSALEKAERRL 759 (1172)
T ss_pred cchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccceecC--CCCCCccHHHHHHHHHHH
Confidence 999999999999999999999999998899999999999999999999999999999999 899999999999999999
Q ss_pred HHcCCCCCCCCCCHhhhhhccCCCchHHHHHHHhhcccCChhHHHHHHhhhccCCCcccCc-------------chhHHH
Q 047202 380 YEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPK-------------DEKQNV 446 (735)
Q Consensus 380 ~~lgal~~~~~lT~lG~~l~~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~~f~~~~-------------~~~~~~ 446 (735)
..+||||.+|.||+||+.|+.||+.|++||||+.+...+|+..++.++++||+..+|+.-. ++++.+
T Consensus 760 ~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~ 839 (1172)
T KOG0926|consen 760 KALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLI 839 (1172)
T ss_pred HHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhcc
Confidence 9999999999999999999999999999999999999999999999999999999887521 111111
Q ss_pred H--------HHHHHHhhhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047202 447 E--------RAKLALLTDKLEGLSDSNDSSTQSDHLVLMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQ 518 (735)
Q Consensus 447 ~--------~~k~~~~~~~~~~~~~~~~~~~~sDhl~~l~~y~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Q 518 (735)
+ ..|.........+++.+. ...||.|.++.|..++..+. ...+||..|||..++|.+++++|+|
T Consensus 840 ~~de~~~d~~~K~~rr~~~~aa~~rf~--~l~sd~l~Ll~Av~a~ey~~------~~~rfc~~ngLr~Kam~Ev~KLR~Q 911 (1172)
T KOG0926|consen 840 KDDETVEDKELKKRRREKSKAARSRFS--NLDSDALVLLSAVSAAEYAE------NGMRFCEANGLRLKAMEEVRKLRKQ 911 (1172)
T ss_pred ccccccccHHHHHHHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhh------hcchhHHhcchHHHHHHHHHHHHHH
Confidence 0 111111000111222232 24599999999998886532 2345999999999999999999999
Q ss_pred HHHHHHHcCCccCCCCCcCCCCCCCCCCcccccccccccccCCcHHHHHHHHHHhcccchhccccccccccccccccccc
Q 047202 519 FGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDESQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSN 598 (735)
Q Consensus 519 l~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~~~~~n~~s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~ 598 (735)
|..++....+-... ..|...-..+ ......+++.+|||||-.+||+.-+..
T Consensus 912 L~~lv~~~~i~~v~-------------~~~d~~l~pp---t~~q~~lLrQ~i~Ag~~DrVArk~~~~------------- 962 (1172)
T KOG0926|consen 912 LTNLVNHGNIQDVE-------------KSWDLTLKPP---TDTQAKLLRQMICAGFADRVARKVDAT------------- 962 (1172)
T ss_pred HHHHHHHhHHHHHH-------------HhcccCCCCC---chHHHHHHHHHHHHHHHHHHHHhcccc-------------
Confidence 99988733221100 0011000011 122567899999999999999852210
Q ss_pred cccCCCceeecCcceEEEccCCcccccccCCCCeEEEEeecccCcceeec-CCCcChHHHHHhcCce
Q 047202 599 SAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRD-TTIVSPFSILLFGGSI 664 (735)
Q Consensus 599 ~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~lvy~e~~~t~k~~lr~-~T~V~p~~llLfgg~l 664 (735)
.+-...-.++|||||+|++++. .|+|++|.|++.|+..||.+ +|.|.|.|++...+.+
T Consensus 963 -----~y~~~~i~~~~fl~~~svl~~~---ape~viY~el~~~~~~~~~~~v~~v~pewl~~~~~sl 1021 (1172)
T KOG0926|consen 963 -----EYDAAKIQEPVFLHRWSVLINS---APELVIYQELLLTNRPYMHGGVTAVRPEWLLNHAKSL 1021 (1172)
T ss_pred -----ccchhhhcCceeeeehhhhhcc---CccceehhhhhhcCCcccccceEEEchHHHHhhhhhh
Confidence 0000111357999999999864 58999999999999877666 9999999999977654
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.2e-84 Score=716.43 Aligned_cols=643 Identities=35% Similarity=0.593 Sum_probs=524.8
Q ss_pred CCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCCceecceEEe
Q 047202 10 KNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEGRTHPVTTYF 89 (735)
Q Consensus 10 ~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~gr~~pV~~~~ 89 (735)
.-|.+++|+|+||+|||++++||||.+++.+... .++++++|||||+|.++|..||+.+|.+.++||+|||+.+|
T Consensus 489 ~glrg~sh~i~deiherdv~~dfll~~lr~m~~t-----y~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~ 563 (1282)
T KOG0921|consen 489 NGLRGISHVIIDEIHERDVDTDFVLIVLREMIST-----YRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFF 563 (1282)
T ss_pred hcccccccccchhhhhhccchHHHHHHHHhhhcc-----chhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHH
Confidence 3588999999999999999999999999998854 47899999999999999999999999999999999999999
Q ss_pred chhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHHHHHhhhcc
Q 047202 90 LEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQTRQNLKRLN 169 (735)
Q Consensus 90 led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (735)
++|++.++.+..+..++......+.....+.+ .+++ .+....-.+|.+.+...+....
T Consensus 564 led~~~~~~~vp~~~~~~k~k~~~~~~~~~~d-dK~~---------------------n~n~~~dd~~~~~~~~am~~~s 621 (1282)
T KOG0921|consen 564 LEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVD-DKGR---------------------NMNILCDPSYNESTRTAMSRLS 621 (1282)
T ss_pred HHHhhhhhhccCCCcCccchhhcccccCchhh-hccc---------------------ccccccChhhcchhhhhhhcch
Confidence 99999999887654433221110000000000 0000 0111122345566666666677
Q ss_pred ccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCcc
Q 047202 170 EDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIR 249 (735)
Q Consensus 170 ~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~r 249 (735)
+..+..++++.++.+|....-+|+||||+|||++|..|+.+|.....+++...+.++|+||.++..+|.+||++.|.|++
T Consensus 622 e~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~ 701 (1282)
T KOG0921|consen 622 EKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVT 701 (1282)
T ss_pred hhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccccc
Confidence 77888999999999998888899999999999999999999988877877778889999999999999999999999999
Q ss_pred EEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhhhcC
Q 047202 250 KVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEKLMR 329 (735)
Q Consensus 250 kVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~~~~ 329 (735)
|+|++||||||||||+||+||||++++|++.|-...++....++|.||-+..||+|||||+++|.|||++++..|+. ++
T Consensus 702 kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~-l~ 780 (1282)
T KOG0921|consen 702 KIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEA-LE 780 (1282)
T ss_pred ccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHH-HH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 58
Q ss_pred CCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhhhhhccCCCchHHHH
Q 047202 330 PYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGK 409 (735)
Q Consensus 330 ~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG~~l~~lp~~p~~~k 409 (735)
++..||+.|+||.++.|.+|.+.+.++..|+...++||+..+|..+-..|..++++|.++.+|++|+.++++|+.|++||
T Consensus 781 ~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k 860 (1282)
T KOG0921|consen 781 DHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGK 860 (1282)
T ss_pred hcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccCChhHHHHHHhhhccCCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 047202 410 MMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLMVAYKKWQKILLK 489 (735)
Q Consensus 410 ~l~~~~~~~c~~~~l~iaa~ls~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sDhl~~l~~y~~w~~~~~~ 489 (735)
|++.+.-++|.+-+..+|+.+++..+|+.-.-.......-++.|.+ ...|||.+...+-+-|++...
T Consensus 861 ~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g------------~kfsdhva~~~v~q~~r~~~q- 927 (1282)
T KOG0921|consen 861 MMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAG------------NKFSDHVAIVSVIQGYREAVQ- 927 (1282)
T ss_pred eeeechhhccchhhhhhhcccccccccccccccccccccchhhccc------------cccccchhhhhhhhhhHHHhh-
Confidence 9999999999999999999999999988643222222223334432 345666666555555554321
Q ss_pred hCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCcccccccccccccCCcHHHHHHH
Q 047202 490 RGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDESQMFNMYANHSSIVKAI 569 (735)
Q Consensus 490 ~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~~~~~n~~s~~~~lika~ 569 (735)
.|....++||..+.++...|++...+|+|+...|+.++|-..+... .....|....+..++.+.
T Consensus 928 ~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~----------------~~v~~ng~d~~l~~~~~l 991 (1282)
T KOG0921|consen 928 MGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFD----------------ISVNVNGPDRELNLMRSL 991 (1282)
T ss_pred hhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccc----------------eeeccCCCCchhHHHHHH
Confidence 2334568999999999999999999999999999988874332211 011122223356679999
Q ss_pred HHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCccc--cc--ccCCCCeEEEEeecccCcce
Q 047202 570 LCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINS--QL--KSFEHPFLVFLEKVETNKVF 645 (735)
Q Consensus 570 L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~--~~--~~~~~~~lvy~e~~~t~k~~ 645 (735)
||+++|||+|..... ..+.+.......||-+|+|. .. -.+|+||+||.||++|..+.
T Consensus 992 L~~~lypn~~~y~ek-------------------rkvLtTe~~~alihk~Svncp~S~qdM~fPsPFFVFGEKIRTRAIS 1052 (1282)
T KOG0921|consen 992 LVMALYPNVAYYVEK-------------------RKVLTTEQSSALIHKYSVNCPNSRQEMDFPSPFFVFGEKIRTRAIS 1052 (1282)
T ss_pred HHhhcCCccceeccc-------------------eeEEeecchhhhhhhhcccCCCcccccCCCCceeeechhhhhheec
Confidence 999999999986321 11222233457788888875 22 25789999999999999999
Q ss_pred eecCCCcChHHHHHhcCceeeecccCeEEEcCeEEEEechhHHHHHHHHHHHHHHHHHHHHhCCCCCCC---CchHHHHH
Q 047202 646 LRDTTIVSPFSILLFGGSINVQHQTGQVTIDGWLKVTAPAQTAVLFKELRLTLHSILRQMIRNPQNSTI---ANNEVVKS 722 (735)
Q Consensus 646 lr~~T~V~p~~llLfgg~l~~~~~~~~l~vD~Wi~~~~~~~~~~ll~~LR~~ld~ll~~~~~~P~~~~~---~~~~~~~~ 722 (735)
.+..|+|+|+.|||||.+-......+.+.||+||+|.++.++|+.+..||.+|++|+.+..++|..... ++.+++ .
T Consensus 1053 ~K~MslVsPLQLLLF~SrKVqsdgq~IV~VDdWIklqIshEaAAcItgLr~AmEaLvvev~knPaiIsqLdpvnarll-n 1131 (1282)
T KOG0921|consen 1053 CKQMSLVSPLQLLLFGSRKVQSDGQGIVRVDDWIKLQISHEAAACITGLRPAMEALVVEVCKNPAIISQLDPVNARLL-N 1131 (1282)
T ss_pred ccCccccChHHHhhhhhhhccccCcceEEeeceeeEeccHHHHHHHhhhHHHHHHHHHHHhcChhHhhccCchhHHHH-H
Confidence 999999999999999966322233458899999999999999999999999999999999999986532 444454 4
Q ss_pred HHHHHhh
Q 047202 723 MIQLLLE 729 (735)
Q Consensus 723 i~~ll~~ 729 (735)
+++-|+.
T Consensus 1132 miRdIs~ 1138 (1282)
T KOG0921|consen 1132 MIRDISR 1138 (1282)
T ss_pred HHHHhcc
Confidence 4444443
No 11
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.2e-74 Score=678.81 Aligned_cols=347 Identities=31% Similarity=0.466 Sum_probs=313.0
Q ss_pred cccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCCc
Q 047202 2 NFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEGR 81 (735)
Q Consensus 2 ~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~gr 81 (735)
++|+++.|+.|++|++|||||+|||++++|+++++++++..... +++|+|+||||++.+.|++||+++|+|.++|+
T Consensus 101 Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr----~dlqlIlmSATl~~~~l~~~l~~~~vI~~~gr 176 (819)
T TIGR01970 101 LTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLR----EDLKILAMSATLDGERLSSLLPDAPVVESEGR 176 (819)
T ss_pred HHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcC----CCceEEEEeCCCCHHHHHHHcCCCcEEEecCc
Confidence 56888999999999999999999999999999999998875432 68999999999999999999999999999999
Q ss_pred eecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHH
Q 047202 82 THPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQT 161 (735)
Q Consensus 82 ~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (735)
.|||+++|+.....
T Consensus 177 ~~pVe~~y~~~~~~------------------------------------------------------------------ 190 (819)
T TIGR01970 177 SFPVEIRYLPLRGD------------------------------------------------------------------ 190 (819)
T ss_pred ceeeeeEEeecchh------------------------------------------------------------------
Confidence 99999999742000
Q ss_pred HHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhc
Q 047202 162 RQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVF 241 (735)
Q Consensus 162 ~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf 241 (735)
+.+. +.+...+.++... ..|+|||||||++||+.+++.|..... .++.+++|||+|++++|.++|
T Consensus 191 ---------~~~~-~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~----~~~~v~pLHg~L~~~eq~~~~ 255 (819)
T TIGR01970 191 ---------QRLE-DAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLD----SDVLICPLYGELSLAAQDRAI 255 (819)
T ss_pred ---------hhHH-HHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcC----CCcEEEEecCCCCHHHHHHHH
Confidence 0000 0111223333322 479999999999999999999976421 357899999999999999999
Q ss_pred CCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceeh
Q 047202 242 LRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTR 321 (735)
Q Consensus 242 ~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~ 321 (735)
+++++|++||||||||||||||||||+||||+|++|++.||+.++++.|.++|||||+|.||+|||||++||+||||||+
T Consensus 256 ~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~ 335 (819)
T TIGR01970 256 KPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSE 335 (819)
T ss_pred hhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhhhhhccC
Q 047202 322 HRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKL 401 (735)
Q Consensus 322 ~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG~~l~~l 401 (735)
++|.. +.+++.|||+|++|++++|++|.+|+.++.+| .|++||+..++.+|++.|+.+||||.+++||++|+.|++|
T Consensus 336 ~~~~~-l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~--~~l~~P~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~l 412 (819)
T TIGR01970 336 EQHQR-LPAQDEPEILQADLSGLALELAQWGAKDPSDL--RWLDAPPSVALAAARQLLQRLGALDAQGRLTAHGKAMAAL 412 (819)
T ss_pred HHHHh-hhcCCCcceeccCcHHHHHHHHHcCCCChhhC--CCCCCcCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhc
Confidence 99987 68999999999999999999999999999888 8999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhhcccCChhHHHHHHhhhccCCCc
Q 047202 402 PVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPF 436 (735)
Q Consensus 402 p~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~~f 436 (735)
|+||++||||+.|+.+||.+++++|||+|+.++++
T Consensus 413 p~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~ 447 (819)
T TIGR01970 413 GCHPRLAAMLLSAHSTGLAALACDLAALLEERGLP 447 (819)
T ss_pred CCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999998864
No 12
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=1.1e-73 Score=672.35 Aligned_cols=456 Identities=27% Similarity=0.380 Sum_probs=366.4
Q ss_pred cccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCCc
Q 047202 2 NFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEGR 81 (735)
Q Consensus 2 ~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~gr 81 (735)
++|.++.||.|++|++|||||+|||++++|++|+++++++... .+++|+|+||||++.+.|++||+++++|.++|+
T Consensus 104 Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~l----r~~lqlilmSATl~~~~l~~~~~~~~~I~~~gr 179 (812)
T PRK11664 104 LTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGL----RDDLKLLIMSATLDNDRLQQLLPDAPVIVSEGR 179 (812)
T ss_pred HHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhC----CccceEEEEecCCCHHHHHHhcCCCCEEEecCc
Confidence 5678889999999999999999999999999999999887542 268999999999999999999999999999999
Q ss_pred eecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHH
Q 047202 82 THPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQT 161 (735)
Q Consensus 82 ~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (735)
.|||+++|+.... .
T Consensus 180 ~~pV~~~y~~~~~--~---------------------------------------------------------------- 193 (812)
T PRK11664 180 SFPVERRYQPLPA--H---------------------------------------------------------------- 193 (812)
T ss_pred cccceEEeccCch--h----------------------------------------------------------------
Confidence 9999999974200 0
Q ss_pred HHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhc
Q 047202 162 RQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVF 241 (735)
Q Consensus 162 ~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf 241 (735)
+.++ +.+...+.++.. ...|+|||||||.+||+.+.+.|.... ..++.+++|||+|+.++|+++|
T Consensus 194 ---------~~~~-~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~----~~~~~v~~Lhg~l~~~eq~~~~ 258 (812)
T PRK11664 194 ---------QRFD-EAVARATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRV----ASDVLLCPLYGALSLAEQQKAI 258 (812)
T ss_pred ---------hhHH-HHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhc----cCCceEEEeeCCCCHHHHHHHh
Confidence 0000 011223333333 247999999999999999999998632 1257799999999999999999
Q ss_pred CCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceeh
Q 047202 242 LRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTR 321 (735)
Q Consensus 242 ~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~ 321 (735)
.++++|++||||||||||||||||||+||||+|++|+..||+.++++.|.++|||||+|.||+|||||++||+||||||+
T Consensus 259 ~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~ 338 (812)
T PRK11664 259 LPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSK 338 (812)
T ss_pred ccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhhhhhccC
Q 047202 322 HRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKL 401 (735)
Q Consensus 322 ~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG~~l~~l 401 (735)
+.|+. +.+++.|||+|++|++++|++|++|+.++.+| .|++||+..++++|++.|+.+||||.+|+||++|+.|++|
T Consensus 339 ~~~~~-l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~--~~ld~P~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~l 415 (812)
T PRK11664 339 EQAER-AAAQSEPEILHSDLSGLLLELLQWGCHDPAQL--SWLDQPPAAALAAAKRLLQQLGALDGQGRLTARGRKMAAL 415 (812)
T ss_pred HHHhh-CccCCCCceeccchHHHHHHHHHcCCCCHHhC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhc
Confidence 99987 68999999999999999999999999999888 8999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhhcccCChh--HHHHHHhhhccCCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCcHHHHHHH
Q 047202 402 PVDVLIGKMMLFGGIFGCLS--PILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLMVA 479 (735)
Q Consensus 402 p~~p~~~k~l~~~~~~~c~~--~~l~iaa~ls~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sDhl~~l~~ 479 (735)
|++|++||||+.|+.+||.. .+..+||+|+.+++ . ..+|....+..
T Consensus 416 p~~Prla~~ll~a~~~~~~~l~~a~~laall~e~~~--~------------------------------~~~d~~~~l~~ 463 (812)
T PRK11664 416 GNDPRLAAMLVAAKEDDEAALATAAKLAAILEEPPR--S------------------------------GSSDLGVALSR 463 (812)
T ss_pred CCchHHHHHHHHHHhcCchhhHHHHHHHHhhccCCC--C------------------------------CcccHHHHHHH
Confidence 99999999999999999753 66777777764421 0 01232111111
Q ss_pred HHHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCccccccccccccc
Q 047202 480 YKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDESQMFNMY 559 (735)
Q Consensus 480 y~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~~~~~n~~ 559 (735)
+. ..|++ .+..+.+|+.. ..+ +.
T Consensus 464 ~~--------------~~~~~----------~~~~~~~~~~~---~~~----~~-------------------------- 486 (812)
T PRK11664 464 KQ--------------PHWQQ----------RAQQLLKRLNV---RGG----EA-------------------------- 486 (812)
T ss_pred HH--------------HHHHH----------HHHHHHHHHHh---hcc----cC--------------------------
Confidence 10 12322 22233333321 000 00
Q ss_pred CCcHHHHHHHHHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCcccccccCCCCeEEEEeec
Q 047202 560 ANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLEKV 639 (735)
Q Consensus 560 s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~lvy~e~~ 639 (735)
+...+..+||+||..+||+...+ .+++... +...+++||+|.++. .+|+++.|++
T Consensus 487 --~~~~~~~~la~aypdriA~~r~~-----------------~~~~~l~-~G~~a~l~~~~~l~~-----~~~lv~a~~~ 541 (812)
T PRK11664 487 --DSSLIAPLLALAFPDRIARRRGQ-----------------DGRYQLA-NGMGAMLDADDALSR-----HEWLIAPLLL 541 (812)
T ss_pred --ChHHHHHHHHHHCHHHHhhhcCC-----------------CCeEEee-CCCeEEECCCCcccC-----CCeEEEEEhh
Confidence 12247789999999999985321 0112222 335699999999864 4899999997
Q ss_pred ccC-c--ceeecCCCcChHHHHH
Q 047202 640 ETN-K--VFLRDTTIVSPFSILL 659 (735)
Q Consensus 640 ~t~-k--~~lr~~T~V~p~~llL 659 (735)
.++ + ..|+.++.|++.|+.-
T Consensus 542 ~~~~~~~~ri~~a~~l~~~~l~~ 564 (812)
T PRK11664 542 QGSASPDARILLALPLDIDELVQ 564 (812)
T ss_pred ccCccccceeeEeeccCHHHHHH
Confidence 663 3 4577899999999843
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.4e-51 Score=473.49 Aligned_cols=302 Identities=23% Similarity=0.346 Sum_probs=241.1
Q ss_pred ccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC--ChHHHHhhhCCCCeEeeCCce-e
Q 047202 7 QGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV--DSNLFSRYFGDCPVITAEGRT-H 83 (735)
Q Consensus 7 ~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~--~~~~f~~yF~~~pvi~i~gr~-~ 83 (735)
..++.|+++++|||||||||+.++|+++++++++..++ .|+++||||+ +.+.|++||+++++++++|++ |
T Consensus 284 L~l~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~-------rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~ 356 (675)
T PHA02653 284 LTLNKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKI-------RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLF 356 (675)
T ss_pred ccccccccCCEEEccccccCccchhHHHHHHHHhhhhc-------CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCC
Confidence 45778999999999999999999999999999876532 3899999999 567899999999999999996 9
Q ss_pred cceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHHHH
Q 047202 84 PVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQTRQ 163 (735)
Q Consensus 84 pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (735)
||+++|+++..... .-..|.+..
T Consensus 357 pV~~~yi~~~~~~~-------------------------------------------------------~~~~y~~~~-- 379 (675)
T PHA02653 357 PISEVYVKNKYNPK-------------------------------------------------------NKRAYIEEE-- 379 (675)
T ss_pred CeEEEEeecCcccc-------------------------------------------------------cchhhhHHH--
Confidence 99999986521000 000000000
Q ss_pred HhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHH--HHhc
Q 047202 164 NLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQ--KKVF 241 (735)
Q Consensus 164 ~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq--~~vf 241 (735)
...+...+... ....+|++|||+||.++|+.+.+.|.... +++.+.+|||+|++.+| +++|
T Consensus 380 -----------k~~~l~~L~~~-~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-----~~~~v~~LHG~Lsq~eq~l~~ff 442 (675)
T PHA02653 380 -----------KKNIVTALKKY-TPPKGSSGIVFVASVSQCEEYKKYLEKRL-----PIYDFYIIHGKVPNIDEILEKVY 442 (675)
T ss_pred -----------HHHHHHHHHHh-hcccCCcEEEEECcHHHHHHHHHHHHhhc-----CCceEEeccCCcCHHHHHHHHHh
Confidence 00111122111 11246799999999999999999997642 24779999999998755 3333
Q ss_pred CCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceeh
Q 047202 242 LRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTR 321 (735)
Q Consensus 242 ~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~ 321 (735)
++|++||||||||||||||||||++|||+|++|... +..++ +.|||+|+|.||+|||||+++|.||+|||+
T Consensus 443 ---~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~ 513 (675)
T PHA02653 443 ---SSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDL 513 (675)
T ss_pred ---ccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECH
Confidence 568999999999999999999999999999988663 33333 579999999999999999999999999999
Q ss_pred hhHhhhcCCCCCCcccccc---hHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHh--hh
Q 047202 322 HRYEKLMRPYQVPEMQRMP---LVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPL--GH 396 (735)
Q Consensus 322 ~~~~~~~~~~~~PEi~r~~---L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~l--G~ 396 (735)
+.+ .| |.|.+ |..++|++|++|++.+..+ |++||+.+++.+|++.|..+||+|+ +||.| |+
T Consensus 514 ~~~--------~p-I~ri~~~~L~~~vL~lk~~g~~~~~~~---~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~ 579 (675)
T PHA02653 514 DLL--------KP-IKRIDSEFLHNYILYAKYFNLTLPEDL---FVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNY 579 (675)
T ss_pred HHh--------HH-HHHHhHHHHHHHHHHHHHcCCCCcccc---cCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccc
Confidence 864 23 66666 8899999999999655443 9999999999999999999998855 79999 99
Q ss_pred hhccCCCchHHHHHHHhhcc
Q 047202 397 HLAKLPVDVLIGKMMLFGGI 416 (735)
Q Consensus 397 ~l~~lp~~p~~~k~l~~~~~ 416 (735)
.|+.+ +.||++++|+.
T Consensus 580 ~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 580 YVNML----EYAKIYVKGGI 595 (675)
T ss_pred cHHHH----HHhHHHhcccH
Confidence 99999 99999999854
No 14
>PRK01172 ski2-like helicase; Provisional
Probab=99.96 E-value=3.8e-28 Score=286.71 Aligned_cols=315 Identities=18% Similarity=0.220 Sum_probs=208.1
Q ss_pred CCCCccEEEEcccccC-----CccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCCCCeEeeCCceec
Q 047202 11 NLTGVTHVIVDEVHER-----SLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGDCPVITAEGRTHP 84 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER-----~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~~pvi~i~gr~~p 84 (735)
.++++++|||||+|+. +...+.++..++. . .+++|+|+||||+ |++.+++|++ ++.+....|..|
T Consensus 132 ~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~---~-----~~~~riI~lSATl~n~~~la~wl~-~~~~~~~~r~vp 202 (674)
T PRK01172 132 IINDVGLIVADEIHIIGDEDRGPTLETVLSSARY---V-----NPDARILALSATVSNANELAQWLN-ASLIKSNFRPVP 202 (674)
T ss_pred HHhhcCEEEEecchhccCCCccHHHHHHHHHHHh---c-----CcCCcEEEEeCccCCHHHHHHHhC-CCccCCCCCCCC
Confidence 4899999999999964 3333333333322 1 2579999999999 8899999997 566666777777
Q ss_pred ceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHHHHH
Q 047202 85 VTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQTRQN 164 (735)
Q Consensus 85 V~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (735)
++......- .. .. + .+.
T Consensus 203 l~~~i~~~~----~~------------------------------~~--------------~---------~~~------ 219 (674)
T PRK01172 203 LKLGILYRK----RL------------------------------IL--------------D---------GYE------ 219 (674)
T ss_pred eEEEEEecC----ee------------------------------ee--------------c---------ccc------
Confidence 764322100 00 00 0 000
Q ss_pred hhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCC------------------CCcEEE
Q 047202 165 LKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGP------------------SSDWLL 226 (735)
Q Consensus 165 ~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~------------------~~~~i~ 226 (735)
.... .+..++.... ..+|++|||+|++.+++.+++.|......... -...|.
T Consensus 220 -----~~~~---~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~ 289 (674)
T PRK01172 220 -----RSQV---DINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVA 289 (674)
T ss_pred -----cccc---cHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEE
Confidence 0000 0112232222 25789999999999999999888653210000 012378
Q ss_pred EecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCc
Q 047202 227 ALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGR 306 (735)
Q Consensus 227 ~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GR 306 (735)
.+||+|++++|+.+++.+++|..||++||+++++||+||+..+||+. ...|+. ....++|.+++.||+||
T Consensus 290 ~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~----~~~~~~------~~~~~~s~~~~~Qm~GR 359 (674)
T PRK01172 290 FHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRD----ITRYGN------GGIRYLSNMEIKQMIGR 359 (674)
T ss_pred EecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcC----ceEeCC------CCceeCCHHHHHHHhhc
Confidence 89999999999999999999999999999999999999999988862 123432 22368999999999999
Q ss_pred CCCCC---CcEEEEce-ehh---hHhhhcCCCCCC--------cccccchHHHHHHHHHcCCCchhHhhhh-cC--CCC-
Q 047202 307 AGRVK---PGICYSLY-TRH---RYEKLMRPYQVP--------EMQRMPLVELCLQIKLLSLGRIKIFLSK-AL--EPP- 367 (735)
Q Consensus 307 AGR~~---~G~c~rL~-t~~---~~~~~~~~~~~P--------Ei~r~~L~~l~L~~k~l~~~~~~~fl~~-~l--~pP- 367 (735)
|||.+ .|.|+.+. +.. .|.+++...+.| ++.+..+-..+......+..++.+|+.. |+ .++
T Consensus 360 AGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~ 439 (674)
T PRK01172 360 AGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGV 439 (674)
T ss_pred CCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCch
Confidence 99986 57666554 322 233444332222 2333222222222222233456666422 22 332
Q ss_pred h--HHHHHHHHHHHHHcCCCCCCC--CCCHhhhhhccCCCchHHHHHHHhhccc
Q 047202 368 K--EEAITTAISVLYEVGAIEGDE--ELTPLGHHLAKLPVDVLIGKMMLFGGIF 417 (735)
Q Consensus 368 ~--~~~i~~a~~~L~~lgal~~~~--~lT~lG~~l~~lp~~p~~~k~l~~~~~~ 417 (735)
. .+.|+.|++.|.+.|+|+.++ .+|++|+.++.+|++|..++.+..+..-
T Consensus 440 ~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 493 (674)
T PRK01172 440 DEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDH 493 (674)
T ss_pred HHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhc
Confidence 2 577999999999999998654 6799999999999999999999877653
No 15
>PRK02362 ski2-like helicase; Provisional
Probab=99.94 E-value=1.6e-24 Score=257.75 Aligned_cols=318 Identities=23% Similarity=0.257 Sum_probs=211.2
Q ss_pred CCCCCccEEEEccccc-----CCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCCCCeEeeCCcee
Q 047202 10 KNLTGVTHVIVDEVHE-----RSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGDCPVITAEGRTH 83 (735)
Q Consensus 10 ~~L~~~s~vIiDEvHE-----R~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~~pvi~i~gr~~ 83 (735)
.+++++++|||||+|. |+...+.++..++.+ .++.|+|+||||+ |++.+++|++. ..+....|..
T Consensus 133 ~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~--------~~~~qii~lSATl~n~~~la~wl~~-~~~~~~~rpv 203 (737)
T PRK02362 133 PWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRL--------NPDLQVVALSATIGNADELADWLDA-ELVDSEWRPI 203 (737)
T ss_pred hhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhc--------CCCCcEEEEcccCCCHHHHHHHhCC-CcccCCCCCC
Confidence 5689999999999993 555555555555432 1568999999999 78899999873 3333344444
Q ss_pred cceEEec-hhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHHH
Q 047202 84 PVTTYFL-EDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQTR 162 (735)
Q Consensus 84 pV~~~~l-ed~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (735)
|+..... .+. ..+ .+. ...
T Consensus 204 ~l~~~v~~~~~---~~~-----------------------------------~~~----~~~------------------ 223 (737)
T PRK02362 204 DLREGVFYGGA---IHF-----------------------------------DDS----QRE------------------ 223 (737)
T ss_pred CCeeeEecCCe---ecc-----------------------------------ccc----ccc------------------
Confidence 4433211 000 000 000 000
Q ss_pred HHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhcc-------------------CCCC--
Q 047202 163 QNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRF-------------------GGPS-- 221 (735)
Q Consensus 163 ~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~-------------------~~~~-- 221 (735)
+.. . +.+....++..... ..+.+|||+|++.+++.+++.|...... ....
T Consensus 224 --~~~--~---~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 294 (737)
T PRK02362 224 --VEV--P---SKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTET 294 (737)
T ss_pred --CCC--c---cchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccc
Confidence 000 0 00011122222222 5789999999999999988877543210 0000
Q ss_pred --------CcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeE
Q 047202 222 --------SDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVED 293 (735)
Q Consensus 222 --------~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~ 293 (735)
...|..+||+|++++|+.+++.|..|..+|++||+++++||++|++++||++ ...||+..+ ..
T Consensus 295 ~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g-----~~ 365 (737)
T PRK02362 295 SKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAG-----MQ 365 (737)
T ss_pred cHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCC-----ce
Confidence 1248899999999999999999999999999999999999999999999965 346876543 26
Q ss_pred eehHhhHHHhcCcCCCCCC---cEEEEceehh-----hHhhhcCCCCCCccccc------chHHHHHHHHHcCC----Cc
Q 047202 294 WISQANARQRRGRAGRVKP---GICYSLYTRH-----RYEKLMRPYQVPEMQRM------PLVELCLQIKLLSL----GR 355 (735)
Q Consensus 294 ~iSkasa~QR~GRAGR~~~---G~c~rL~t~~-----~~~~~~~~~~~PEi~r~------~L~~l~L~~k~l~~----~~ 355 (735)
++|.+++.||+|||||.+- |.|+-+.... .|+..+.. .||-..+ .|...++...+.+. .+
T Consensus 366 ~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~--~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d 443 (737)
T PRK02362 366 PIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA--DPEDVRSKLATEPALRTHVLSTIASGFARTRDG 443 (737)
T ss_pred eCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC--CCCceeecCCChhhHHHHHHHHHHhCccCCHHH
Confidence 8999999999999999764 9999998653 13333221 2322222 24444555444442 34
Q ss_pred hhHhhhh-cCCCC------hHHHHHHHHHHHHHcCCCCCCC---CCCHhhhhhccCCCchHHHHHHHhhcc
Q 047202 356 IKIFLSK-ALEPP------KEEAITTAISVLYEVGAIEGDE---ELTPLGHHLAKLPVDVLIGKMMLFGGI 416 (735)
Q Consensus 356 ~~~fl~~-~l~pP------~~~~i~~a~~~L~~lgal~~~~---~lT~lG~~l~~lp~~p~~~k~l~~~~~ 416 (735)
+.+|+.. |+..+ -.+.++.+++.|.+.|+|+.++ ..|++|+.++.++++|..++.+..+..
T Consensus 444 ~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 444 LLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred HHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 4455422 22222 2356899999999999998765 499999999999999999999987754
No 16
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.91 E-value=9.2e-27 Score=259.09 Aligned_cols=453 Identities=8% Similarity=-0.196 Sum_probs=338.2
Q ss_pred CCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCCceecceEEech
Q 047202 12 LTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEGRTHPVTTYFLE 91 (735)
Q Consensus 12 L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~gr~~pV~~~~le 91 (735)
+.+..|++.||.|+|++|||+++.+++.+. .+++|++|+++..|-.||-.++.+.+|++++|++.++.+
T Consensus 519 m~~ty~dl~v~lmsatIdTd~f~~~f~~~p-----------~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~ 587 (1282)
T KOG0921|consen 519 MISTYRDLRVVLMSATIDTDLFTNFFSSIP-----------DVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDD 587 (1282)
T ss_pred hhccchhhhhhhhhcccchhhhhhhhcccc-----------ceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcc
Confidence 567899999999999999999999998653 469999999999999998899999999999999988866
Q ss_pred hhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHHHHHhhhcccc
Q 047202 92 DVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQTRQNLKRLNED 171 (735)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (735)
|-.... .+.|.+ ..+..-......+ --++.+..+ +.+..-.+.+.
T Consensus 588 ~~~~~~-------------~ddK~~--n~n~~~dd~~~~~-~~~am~~~s-------------------e~d~~f~l~Ea 632 (1282)
T KOG0921|consen 588 DEEDEE-------------VDDKGR--NMNILCDPSYNES-TRTAMSRLS-------------------EKDIPFGLIEA 632 (1282)
T ss_pred cccCch-------------hhhccc--ccccccChhhcch-hhhhhhcch-------------------hhcchhHHHHH
Confidence 521110 011100 0000000000000 000000000 00111111111
Q ss_pred ccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEE
Q 047202 172 VIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKV 251 (735)
Q Consensus 172 ~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkV 251 (735)
..++.++..+..+|.--.++++.|+|||+|.-+......+.....+.-. ...+.+.|+.+...++..+++..+.+.+++
T Consensus 633 l~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~H-sq~~~~eqrkvf~~~p~gv~kii~stniae 711 (1282)
T KOG0921|consen 633 LLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLH-SQLTSQEQRKVFEPVPEGVTKIILSTNIAE 711 (1282)
T ss_pred HHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccch-hhcccHhhhhccCcccccccccccccceee
Confidence 1222222233333433457899999999999998888877665433322 345889999999999999999999999999
Q ss_pred EEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhhhcCCC
Q 047202 252 IIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEKLMRPY 331 (735)
Q Consensus 252 IlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~~~~~~ 331 (735)
+..|++++++|++.++.+|++++..+.+.+.....++...+.|-++-...||.|||+|.+.|.||+++....+.. |..+
T Consensus 712 tsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~e-m~r~ 790 (1282)
T KOG0921|consen 712 TSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAE-MFRT 790 (1282)
T ss_pred EeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHh-hhcC
Confidence 999999999999999999999999999998888888889999999999999999999999999999999999988 5678
Q ss_pred CCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhhhhhccCCCchHHHHHH
Q 047202 332 QVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMM 411 (735)
Q Consensus 332 ~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG~~l~~lp~~p~~~k~l 411 (735)
+.|||.++++....+.++.+-.+.+..++.+++.+|+.....-+.-.+...-+.+..-.+|++|+....+|+.+..|++.
T Consensus 791 plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~ 870 (1282)
T KOG0921|consen 791 PLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGA 870 (1282)
T ss_pred ccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhcc
Confidence 99999999988888888776666677787788888877665555444444444444456899999999999999999999
Q ss_pred HhhcccCChhHHHHHHhhhccCCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhC
Q 047202 412 LFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLMVAYKKWQKILLKRG 491 (735)
Q Consensus 412 ~~~~~~~c~~~~l~iaa~ls~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sDhl~~l~~y~~w~~~~~~~~ 491 (735)
..++.+=..+...+++++-..+.+|......+. -+..+|. +...+||.+.+..++.|..+. .+
T Consensus 871 ~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~---~~g~kfs------------dhva~~~v~q~~r~~~q~ga~--~e 933 (1282)
T KOG0921|consen 871 GSVMCDVASAMSFPTPFVPREKHHSRLSGTQRK---FAGNKFS------------DHVAIVSVIQGYREAVQMGAA--AE 933 (1282)
T ss_pred chhhhhhhcccccccccccccccccccccchhh---ccccccc------------cchhhhhhhhhhHHHhhhhhh--hh
Confidence 988877666667777777667777776443322 2345563 236799999999999999873 34
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCcc
Q 047202 492 TKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLIN 530 (735)
Q Consensus 492 ~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~ 530 (735)
.+....||..+-+...++.+-+++..||. ++..-+++.
T Consensus 934 ~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~~fpe~~~ 971 (1282)
T KOG0921|consen 934 REFCERYSLSNPVLKMTDGARRQLIDVLR-QCSFPEDIL 971 (1282)
T ss_pred hhHhHhhhhcchhhhhhhhhHHHHHHHHH-hccCccccc
Confidence 56788999999999999999999999988 666655543
No 17
>PRK00254 ski2-like helicase; Provisional
Probab=99.90 E-value=2.2e-22 Score=239.05 Aligned_cols=213 Identities=21% Similarity=0.163 Sum_probs=148.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhc-c-C----------------CC--------CCcEEEEecCCCCHHHHHHhcCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYR-F-G----------------GP--------SSDWLLALHSSVASVDQKKVFLR 243 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~-~-~----------------~~--------~~~~i~~LHs~l~~~eq~~vf~~ 243 (735)
.++.+|||++++.+++.++..|..... + . +. -...|.++||+|++++|..+++.
T Consensus 237 ~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~ 316 (720)
T PRK00254 237 KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDA 316 (720)
T ss_pred hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999877665532110 0 0 00 01248999999999999999999
Q ss_pred CCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC---CcEEEEcee
Q 047202 244 PPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK---PGICYSLYT 320 (735)
Q Consensus 244 ~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~c~rL~t 320 (735)
|+.|..||++||++++.||+||++++||... ..|+ .. ...+++.+++.||+|||||.+ .|.|+-+.+
T Consensus 317 F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~-~~-----~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~ 386 (720)
T PRK00254 317 FREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYS-NF-----GWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVAT 386 (720)
T ss_pred HHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcC-CC-----CceeCCHHHHHHhhhccCCCCcCCCceEEEEec
Confidence 9999999999999999999999999999643 2343 11 224566789999999999964 599998876
Q ss_pred hhh----HhhhcC--------CCCCCcccccchHHHHHHHHHcC-CC---chhHhhhhcC---CCCh----HHHHHHHHH
Q 047202 321 RHR----YEKLMR--------PYQVPEMQRMPLVELCLQIKLLS-LG---RIKIFLSKAL---EPPK----EEAITTAIS 377 (735)
Q Consensus 321 ~~~----~~~~~~--------~~~~PEi~r~~L~~l~L~~k~l~-~~---~~~~fl~~~l---~pP~----~~~i~~a~~ 377 (735)
... |+.++. ..+.++.++.. ++.....+ +. ++.+||...+ ..|+ ...++.++.
T Consensus 387 ~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~----ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~ 462 (720)
T PRK00254 387 TEEPSKLMERYIFGKPEKLFSMLSNESAFRSQ----VLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVY 462 (720)
T ss_pred CcchHHHHHHHHhCCchhhhccCCchHHHHHH----HHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHH
Confidence 433 333321 12222333333 33333322 22 3334443322 2233 356788999
Q ss_pred HHHHcCCCCCC----CCCCHhhhhhccCCCchHHHHHHHhhcc
Q 047202 378 VLYEVGAIEGD----EELTPLGHHLAKLPVDVLIGKMMLFGGI 416 (735)
Q Consensus 378 ~L~~lgal~~~----~~lT~lG~~l~~lp~~p~~~k~l~~~~~ 416 (735)
.|.+.|.|+.+ -..|++|+.++.++++|..++++..+..
T Consensus 463 ~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~ 505 (720)
T PRK00254 463 FLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFP 505 (720)
T ss_pred HHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999643 2579999999999999999999876653
No 18
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.87 E-value=1.3e-21 Score=221.44 Aligned_cols=118 Identities=23% Similarity=0.278 Sum_probs=101.7
Q ss_pred HHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCC
Q 047202 183 CHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSI 262 (735)
Q Consensus 183 ~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsi 262 (735)
.++.....++.+|||+++.++++.+.+.|... ++.+.++||++++.+|+.+++.|..|..+|+|||+++|+||
T Consensus 234 ~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~-------~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGi 306 (460)
T PRK11776 234 QRLLLHHQPESCVVFCNTKKECQEVADALNAQ-------GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGL 306 (460)
T ss_pred HHHHHhcCCCceEEEECCHHHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccccccc
Confidence 33334456788999999999999999999764 46799999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhHh
Q 047202 263 TIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRYE 325 (735)
Q Consensus 263 tIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~~ 325 (735)
+||+|.+||+.+.+ -+..++.||+|||||.+. |.||.+++..+..
T Consensus 307 Di~~v~~VI~~d~p------------------~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 307 DIKALEAVINYELA------------------RDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred chhcCCeEEEecCC------------------CCHhHhhhhcccccCCCCcceEEEEEchhHHH
Confidence 99999999995532 245678899999999875 9999999987543
No 19
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.9e-20 Score=205.78 Aligned_cols=123 Identities=21% Similarity=0.323 Sum_probs=106.8
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
+.++|..+. ...+|.+|||+.+..+++.+...|... ++.+..+||..+++||..+++.|++|..+|+||||+
T Consensus 329 l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~-------~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdV 400 (519)
T KOG0331|consen 329 LGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRK-------GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDV 400 (519)
T ss_pred HHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhc-------CcceeeecccccHHHHHHHHHhcccCCcceEEEccc
Confidence 445666665 457889999999999999999888754 356999999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 258 AETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 258 AEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
|.+|++||||++||+ ||+..+++ .|.||.||+||.+ .|..|-+|+...+..
T Consensus 401 AaRGLDi~dV~lVIn--------ydfP~~vE----------dYVHRiGRTGRa~~~G~A~tfft~~~~~~ 452 (519)
T KOG0331|consen 401 AARGLDVPDVDLVIN--------YDFPNNVE----------DYVHRIGRTGRAGKKGTAITFFTSDNAKL 452 (519)
T ss_pred ccccCCCccccEEEe--------CCCCCCHH----------HHHhhcCccccCCCCceEEEEEeHHHHHH
Confidence 999999999999999 88776654 6779999999965 499999999987654
No 20
>PTZ00110 helicase; Provisional
Probab=99.84 E-value=9.8e-21 Score=217.37 Aligned_cols=110 Identities=23% Similarity=0.348 Sum_probs=97.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
..+.+|||+++..+++.+.+.|... ++.+..+||++++++|..+++.|..|..+|+|||++|++||+||+|++
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~-------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~ 448 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD-------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKY 448 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc-------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCE
Confidence 5679999999999999999998743 466899999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhH
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRY 324 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~ 324 (735)
||+ ||. |-+..++.||+||+||.+. |.||.+|+..+.
T Consensus 449 VI~--------~d~----------P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 449 VIN--------FDF----------PNQIEDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred EEE--------eCC----------CCCHHHHHHHhcccccCCCCceEEEEECcchH
Confidence 999 543 2356788999999999864 999999998754
No 21
>PTZ00424 helicase 45; Provisional
Probab=99.83 E-value=3.1e-20 Score=206.77 Aligned_cols=118 Identities=18% Similarity=0.264 Sum_probs=101.4
Q ss_pred HHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCC
Q 047202 184 HVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSIT 263 (735)
Q Consensus 184 ~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsit 263 (735)
.+.+....+.+|||+++.++++.+.+.|... ++.+..+||+++.++|+.+++.++.|..+|++||++++.||+
T Consensus 260 ~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~-------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiD 332 (401)
T PTZ00424 260 DLYETLTITQAIIYCNTRRKVDYLTKKMHER-------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGID 332 (401)
T ss_pred HHHHhcCCCeEEEEecCcHHHHHHHHHHHHC-------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcC
Confidence 3333345678999999999999999988654 467999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 264 IDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 264 IpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
||+|++||+. |. +.|.+++.||+|||||.+ .|.||.++++++.+.
T Consensus 333 ip~v~~VI~~--------~~----------p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~ 378 (401)
T PTZ00424 333 VQQVSLVINY--------DL----------PASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQ 378 (401)
T ss_pred cccCCEEEEE--------CC----------CCCHHHEeecccccccCCCCceEEEEEcHHHHHH
Confidence 9999999984 32 347788889999999976 599999999887654
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.83 E-value=4.7e-20 Score=208.23 Aligned_cols=119 Identities=20% Similarity=0.239 Sum_probs=101.2
Q ss_pred HHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccccc
Q 047202 181 LVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAET 260 (735)
Q Consensus 181 ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEt 260 (735)
++.++........+|||+++..+++.+++.|... ++.+..+||++++++|.++++.|..|..+|+|||+++++
T Consensus 235 ~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~-------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~r 307 (456)
T PRK10590 235 LLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD-------GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAAR 307 (456)
T ss_pred HHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC-------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhc
Confidence 3444444445678999999999999999999754 467899999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhH
Q 047202 261 SITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRY 324 (735)
Q Consensus 261 sitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~ 324 (735)
||+||+|.+||+ ||.. -+..++.||+|||||.+. |.|+-+++..+.
T Consensus 308 GiDip~v~~VI~--------~~~P----------~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 308 GLDIEELPHVVN--------YELP----------NVPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred CCCcccCCEEEE--------eCCC----------CCHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 999999999998 4432 345678899999999875 999999987654
No 23
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.83 E-value=1.1e-19 Score=205.93 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=103.1
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE 259 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE 259 (735)
+++..+.+..+....|||+++.++++.+.+.|... ++.+.++||+|++++|.++++.+..|..+|||||++++
T Consensus 215 ~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~-------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~ 287 (470)
T TIGR00614 215 DLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNL-------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFG 287 (470)
T ss_pred HHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhc-------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhh
Confidence 34444443334556699999999999999999754 46789999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 260 TSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 260 tsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
+||++|+|++||+.+.+ -|..++.||+|||||.+ +|.|+.+|+..+...
T Consensus 288 ~GID~p~V~~VI~~~~P------------------~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~ 337 (470)
T TIGR00614 288 MGINKPDVRFVIHYSLP------------------KSMESYYQESGRAGRDGLPSECHLFYAPADINR 337 (470)
T ss_pred ccCCcccceEEEEeCCC------------------CCHHHHHhhhcCcCCCCCCceEEEEechhHHHH
Confidence 99999999999985433 25788999999999987 599999999876643
No 24
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.83 E-value=8.9e-20 Score=215.54 Aligned_cols=113 Identities=15% Similarity=0.073 Sum_probs=95.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccC-CCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFG-GPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~-~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
...+|||++++..++.+++.|....... ...+..+..+||++++++|+++.+.+..|+.+++||||++|+||+||+|++
T Consensus 271 ~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~ 350 (742)
T TIGR03817 271 GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDA 350 (742)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccE
Confidence 5789999999999999998886542111 111346889999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceeh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTR 321 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~ 321 (735)
||+.|. |-|.+++.||+|||||.+. |.++-+.+.
T Consensus 351 VI~~~~------------------P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 351 VVIAGF------------------PGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred EEEeCC------------------CCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 999553 3367899999999999876 999988763
No 25
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.82 E-value=8.1e-20 Score=207.55 Aligned_cols=116 Identities=21% Similarity=0.219 Sum_probs=100.2
Q ss_pred HHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCC
Q 047202 183 CHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSI 262 (735)
Q Consensus 183 ~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsi 262 (735)
..+......+.+|||+++.++++.+.+.|... ++.+..+||+++.++|.++++.|..|..+||||||++|+||
T Consensus 327 ~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GI 399 (475)
T PRK01297 327 YNLVTQNPWERVMVFANRKDEVRRIEERLVKD-------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGI 399 (475)
T ss_pred HHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCC
Confidence 33333345568999999999999999988654 46689999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhh
Q 047202 263 TIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHR 323 (735)
Q Consensus 263 tIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~ 323 (735)
+||+|++||+.|. |-|.+++.||+|||||.+. |.|+.++++++
T Consensus 400 Di~~v~~VI~~~~------------------P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 400 HIDGISHVINFTL------------------PEDPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred cccCCCEEEEeCC------------------CCCHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 9999999999543 3478899999999999875 99999998764
No 26
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.82 E-value=1.1e-19 Score=203.64 Aligned_cols=117 Identities=21% Similarity=0.234 Sum_probs=100.4
Q ss_pred HHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCC
Q 047202 183 CHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSI 262 (735)
Q Consensus 183 ~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsi 262 (735)
..+......+.+|||+++...++.+.+.|... ++.+..+||++++++|.++++.|..|..+|+|||+++++||
T Consensus 247 ~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~-------g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 247 QTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD-------GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC-------CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 33333345678999999999999999999754 56799999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhH
Q 047202 263 TIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRY 324 (735)
Q Consensus 263 tIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~ 324 (735)
+||+|++||+ ||... |..+|.||+|||||.+. |.|+-++++++.
T Consensus 320 Dip~v~~VI~--------~d~P~----------s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 320 HIPAVTHVFN--------YDLPD----------DCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred CccccCEEEE--------eCCCC----------chhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 9999999999 55432 55667799999999875 999999998743
No 27
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.82 E-value=1.1e-19 Score=204.29 Aligned_cols=123 Identities=24% Similarity=0.300 Sum_probs=105.6
Q ss_pred HHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccc
Q 047202 179 EDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIA 258 (735)
Q Consensus 179 ~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIA 258 (735)
.+++.++......+.+|||+++.++++.+++.|... ++.+..+||++++.+|..+++.+..|..+|+|||+++
T Consensus 233 ~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~ 305 (434)
T PRK11192 233 TALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA-------GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVA 305 (434)
T ss_pred HHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC-------CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcccc
Confidence 345556655556789999999999999999999753 4679999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhHhh
Q 047202 259 ETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRYEK 326 (735)
Q Consensus 259 EtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~~~ 326 (735)
++||+||+|.+||+ ||. |.|...+.||+|||||.+. |.|+.+++..++..
T Consensus 306 ~~GiDip~v~~VI~--------~d~----------p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 306 ARGIDIDDVSHVIN--------FDM----------PRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLL 356 (434)
T ss_pred ccCccCCCCCEEEE--------ECC----------CCCHHHHhhcccccccCCCCceEEEEecHHHHHH
Confidence 99999999999998 442 3466788999999999764 99999998876643
No 28
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.82 E-value=1.5e-19 Score=209.80 Aligned_cols=113 Identities=17% Similarity=0.240 Sum_probs=99.5
Q ss_pred ccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCC
Q 047202 187 ETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDD 266 (735)
Q Consensus 187 ~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpd 266 (735)
.......+|||+++..+++.+.+.|... ++.+..+||.|++.+|.++++.+..|+.+|+|||++|++||+||+
T Consensus 241 ~~~~~~~~IVF~~tk~~a~~l~~~L~~~-------g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~ 313 (629)
T PRK11634 241 EAEDFDAAIIFVRTKNATLEVAEALERN-------GYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVER 313 (629)
T ss_pred HhcCCCCEEEEeccHHHHHHHHHHHHhC-------CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCccc
Confidence 3345678999999999999999999764 567999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhH
Q 047202 267 VVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRY 324 (735)
Q Consensus 267 V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~ 324 (735)
|.+||+ ||. |.+..++.||+|||||.+. |.|+-+++..+.
T Consensus 314 V~~VI~--------~d~----------P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 314 ISLVVN--------YDI----------PMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred CCEEEE--------eCC----------CCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 999998 554 3456788999999999876 999999987543
No 29
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.82 E-value=1.8e-19 Score=209.77 Aligned_cols=113 Identities=17% Similarity=0.134 Sum_probs=100.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
..++..|||++++++++.+++.|... ++.+.++||+|++++|.++++.|..|..+|||||+++++||++|||+
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~-------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSR-------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhC-------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 35678999999999999999999764 46799999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
+||+ ||. |-|..++.||+|||||.+ +|.|+.+|+..++..
T Consensus 307 ~VI~--------~d~----------P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~ 347 (607)
T PRK11057 307 FVVH--------FDI----------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (607)
T ss_pred EEEE--------eCC----------CCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHH
Confidence 9998 443 336788999999999987 499999999877543
No 30
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.82 E-value=1.8e-19 Score=207.73 Aligned_cols=112 Identities=20% Similarity=0.281 Sum_probs=98.8
Q ss_pred ccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCC
Q 047202 187 ETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDD 266 (735)
Q Consensus 187 ~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpd 266 (735)
.....+.+|||+++...++.+.+.|... ++.+..+||+|++.+|.++++.|..|..+|+|||+++|+||+||+
T Consensus 253 ~~~~~~k~LVF~nt~~~ae~l~~~L~~~-------g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~ 325 (572)
T PRK04537 253 SRSEGARTMVFVNTKAFVERVARTLERH-------GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDG 325 (572)
T ss_pred hcccCCcEEEEeCCHHHHHHHHHHHHHc-------CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccC
Confidence 3345678999999999999999999754 467999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhh
Q 047202 267 VVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHR 323 (735)
Q Consensus 267 V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~ 323 (735)
|++||+ ||. |.|..++.||+|||||.+. |.|+.+++..+
T Consensus 326 V~~VIn--------yd~----------P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 326 VKYVYN--------YDL----------PFDAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred CCEEEE--------cCC----------CCCHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 999998 442 3467788999999999865 99999988754
No 31
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.81 E-value=2.2e-19 Score=205.54 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=97.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEE
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYV 270 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~V 270 (735)
.+.+|||+++...++.+.+.|.... ++.+..+||++++++|..+++.|..|..+|+|||+++++||+||+|++|
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~~------g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~V 440 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVVT------GLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQV 440 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhcc------CcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEE
Confidence 4679999999999999998886432 4678999999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhH
Q 047202 271 FDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRY 324 (735)
Q Consensus 271 IDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~ 324 (735)
|+ ||. |.|..++.||+|||||.+. |.|+.+++.++.
T Consensus 441 I~--------~d~----------P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 441 II--------FDM----------PNTIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred EE--------eCC----------CCCHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 98 553 3467889999999999874 999999998754
No 32
>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO). In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.80 E-value=5.4e-20 Score=167.65 Aligned_cols=114 Identities=31% Similarity=0.446 Sum_probs=74.3
Q ss_pred HHHHHHHHHcCCccCCCCCcCCCCCCCCCCcccccccccccccCCcHHHHHHHHHHhcccchhccccccccccccccccc
Q 047202 517 IQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDESQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKS 596 (735)
Q Consensus 517 ~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~~~~~n~~s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~ 596 (735)
+||.++|++.|++....... . ......|.++.+..+|+++||+|||||||+++.+
T Consensus 1 ~QL~~il~~~g~~~~~~~~~---~----------~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~------------ 55 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQ---S----------ISQRPPNENRDQWELIRAALCAGFYPNVARRDNK------------ 55 (114)
T ss_dssp HHHHHHHHHTT-----------------------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TT------------
T ss_pred CHHHHHHHHcCCCCCccccc---c----------ccccccccccccHHHHHHHHHHhhhhheEEeCCC------------
Confidence 59999999999976533110 0 0011223334678999999999999999986531
Q ss_pred cccccCCCceeecCcceEEEccCCcccccccCCCCeEEEEeecccCcceeecCCCcChHHHHHhcCce
Q 047202 597 SNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGSI 664 (735)
Q Consensus 597 ~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~lvy~e~~~t~k~~lr~~T~V~p~~llLfgg~l 664 (735)
+.+....++..|+|||+|++++. +++|++|+|+++|+|.|||+||.|+|.||++|||++
T Consensus 56 ------~~y~~~~~~~~v~iHPsS~l~~~---~p~~vvy~e~~~t~k~y~~~~t~I~~~wl~~~~~~~ 114 (114)
T PF07717_consen 56 ------GSYKTLSNGQPVFIHPSSVLFKK---PPKWVVYHELVRTSKPYMRDVTAISPEWLLLFAPHY 114 (114)
T ss_dssp ------SSEEETTTG-EEEE-TTSTTTTT---T-SEEEEEEEEESSSEEEEEEEE--HHHHHHH-TTT
T ss_pred ------CCEEEecCCCEEEEecCcccccc---ccccchhhhheecCCcEEEECcCCCHHHHHHHcccC
Confidence 11222234458999999999643 578999999999999999999999999999999873
No 33
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.80 E-value=3.1e-19 Score=192.09 Aligned_cols=312 Identities=23% Similarity=0.275 Sum_probs=217.9
Q ss_pred CCCCCccEEEEcccc-----cCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCCCCeEeeCCcee
Q 047202 10 KNLTGVTHVIVDEVH-----ERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGDCPVITAEGRTH 83 (735)
Q Consensus 10 ~~L~~~s~vIiDEvH-----ER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~~pvi~i~gr~~ 83 (735)
..|.++.+||||||| ||+.-.|=|.+-||.+. |+-|+|.+|||+ |++.++++|+ +..+..++|..
T Consensus 334 ~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~--------~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPV 404 (830)
T COG1202 334 KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF--------PGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPV 404 (830)
T ss_pred CcccccceEEeeeeeeccchhcccchhhHHHHHHHhC--------CCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCC
Confidence 578999999999999 89999999999999877 678999999999 9999999998 67777888988
Q ss_pred cceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHHHH
Q 047202 84 PVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQTRQ 163 (735)
Q Consensus 84 pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (735)
|++-|.+-.- +
T Consensus 405 plErHlvf~~----------------------------~----------------------------------------- 415 (830)
T COG1202 405 PLERHLVFAR----------------------------N----------------------------------------- 415 (830)
T ss_pred ChhHeeeeec----------------------------C-----------------------------------------
Confidence 8875543100 0
Q ss_pred HhhhccccccchHHHHHHHHH----HHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHH
Q 047202 164 NLKRLNEDVIDYDLLEDLVCH----VDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKK 239 (735)
Q Consensus 164 ~~~~~~~~~i~~~li~~ll~~----i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~ 239 (735)
+.-..++|..++.. ..+..-.|..+||-.++..++.+++.|... ++...|+|++|+..+|++
T Consensus 416 -------e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k-------G~~a~pYHaGL~y~eRk~ 481 (830)
T COG1202 416 -------ESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK-------GLKAAPYHAGLPYKERKS 481 (830)
T ss_pred -------chHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC-------CcccccccCCCcHHHHHH
Confidence 00001122222221 122234689999999999999999998754 678999999999999999
Q ss_pred hcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC---CcEEE
Q 047202 240 VFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK---PGICY 316 (735)
Q Consensus 240 vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~c~ 316 (735)
+...|..+..-+||.|-....||++|.-.++.+| -.+...|+|..++.|+.|||||.. .|++|
T Consensus 482 vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs--------------LaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVy 547 (830)
T COG1202 482 VERAFAAQELAAVVTTAALAAGVDFPASQVIFES--------------LAMGIEWLSVREFQQMLGRAGRPDYHDRGKVY 547 (830)
T ss_pred HHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH--------------HHcccccCCHHHHHHHhcccCCCCcccCceEE
Confidence 9999999999999999999999999975544432 123468999999999999999975 48888
Q ss_pred Eceeh-hhHhhhcCC----------CCCCccccc------chHHHHHHHHHcCCCc-hhHhhhhcCCCChHHHHHHHHHH
Q 047202 317 SLYTR-HRYEKLMRP----------YQVPEMQRM------PLVELCLQIKLLSLGR-IKIFLSKALEPPKEEAITTAISV 378 (735)
Q Consensus 317 rL~t~-~~~~~~~~~----------~~~PEi~r~------~L~~l~L~~k~l~~~~-~~~fl~~~l~pP~~~~i~~a~~~ 378 (735)
-|.-. ..|...|.+ ...||-.-+ .++++....-..+-.+ +...-+..+.+ .-..+.+++.
T Consensus 548 llvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA~~~v~~s~~~i~~v~~~~~g~--~~~~~k~l~~ 625 (830)
T COG1202 548 LLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLASAGVTNSLSVIERVNSLMLGA--AFDPKKALSK 625 (830)
T ss_pred EEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHHHhhhcCcHHHHhhcChhhccc--cCCHHHHHHH
Confidence 77543 234332221 112221111 1233322111111101 11110011111 1224789999
Q ss_pred HHHcCCCCCCC---CCCHhhhhhccCCCchHHHHHHHhhcccCChhHHHHHHhhhc
Q 047202 379 LYEVGAIEGDE---ELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLS 431 (735)
Q Consensus 379 L~~lgal~~~~---~lT~lG~~l~~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls 431 (735)
|+..|.|..+| ++|+.|+.++.-=+.|.-+-.|-.+. ..--+| +-|++.|.
T Consensus 626 Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v-~~~~~p-l~i~~~l~ 679 (830)
T COG1202 626 LEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGV-LASMDP-LRIAAELE 679 (830)
T ss_pred HHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHhh-hccCCh-HhHhhccc
Confidence 99999999776 79999999999999999999888775 233333 55555553
No 34
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=8.4e-20 Score=188.90 Aligned_cols=117 Identities=17% Similarity=0.211 Sum_probs=101.4
Q ss_pred HHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCC
Q 047202 183 CHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSI 262 (735)
Q Consensus 183 ~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsi 262 (735)
.||.+...+++++||+++....+.+.-.|... ++..+||||.|+++.|..+|+.|..|.|.|++||+||.+|+
T Consensus 292 V~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l-------g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGL 364 (476)
T KOG0330|consen 292 VYLLNELAGNSVIVFCNTCNTTRFLALLLRNL-------GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGL 364 (476)
T ss_pred HHHHHhhcCCcEEEEEeccchHHHHHHHHHhc-------CcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccC
Confidence 34444446689999999999999888777765 68899999999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhH
Q 047202 263 TIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRY 324 (735)
Q Consensus 263 tIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~ 324 (735)
+||.|++||| ||- |.+-..|.||.||.||+|. |..+.|.|..+.
T Consensus 365 Dip~Vd~VVN--------yDi----------P~~skDYIHRvGRtaRaGrsG~~ItlVtqyDv 409 (476)
T KOG0330|consen 365 DIPHVDVVVN--------YDI----------PTHSKDYIHRVGRTARAGRSGKAITLVTQYDV 409 (476)
T ss_pred CCCCceEEEe--------cCC----------CCcHHHHHHHcccccccCCCcceEEEEehhhh
Confidence 9999999999 774 3445678899999999875 999999998443
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.79 E-value=9.3e-19 Score=206.37 Aligned_cols=120 Identities=20% Similarity=0.182 Sum_probs=102.1
Q ss_pred HHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccC
Q 047202 182 VCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETS 261 (735)
Q Consensus 182 l~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEts 261 (735)
...+......+..|||+.++.+++.+++.|... ++.+.++||+|++++|..+++.|..|..+|||||+++++|
T Consensus 671 ~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~-------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMG 743 (1195)
T PLN03137 671 DKFIKENHFDECGIIYCLSRMDCEKVAERLQEF-------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMG 743 (1195)
T ss_pred HHHHHhcccCCCceeEeCchhHHHHHHHHHHHC-------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcC
Confidence 333433334567899999999999999999754 5779999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 262 ITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 262 itIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
|++|||++||+.++++ |-.+|.||+|||||.+ +|.|+-+|+..++..
T Consensus 744 IDkPDVR~VIHydlPk------------------SiEsYyQriGRAGRDG~~g~cILlys~~D~~~ 791 (1195)
T PLN03137 744 INKPDVRFVIHHSLPK------------------SIEGYHQECGRAGRDGQRSSCVLYYSYSDYIR 791 (1195)
T ss_pred CCccCCcEEEEcCCCC------------------CHHHHHhhhcccCCCCCCceEEEEecHHHHHH
Confidence 9999999999955433 5567889999999987 599999999877743
No 36
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=1e-18 Score=199.05 Aligned_cols=120 Identities=23% Similarity=0.345 Sum_probs=105.2
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
..+++.++.+....+.+|||+++...++.+...|... ++.+..|||+|++++|.++++.|.+|..+|+|||++
T Consensus 260 k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~-------g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDv 332 (513)
T COG0513 260 KLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR-------GFKVAALHGDLPQEERDRALEKFKDGELRVLVATDV 332 (513)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC-------CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEech
Confidence 3456677777667778999999999999999988765 578999999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehh
Q 047202 258 AETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRH 322 (735)
Q Consensus 258 AEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~ 322 (735)
|.+||+||+|.+||+ ||.... ...|.||.||+||.+. |.++.+++..
T Consensus 333 aaRGiDi~~v~~Vin--------yD~p~~----------~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 333 AARGLDIPDVSHVIN--------YDLPLD----------PEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred hhccCCccccceeEE--------ccCCCC----------HHHheeccCccccCCCCCeEEEEeCcH
Confidence 999999999999999 775543 4556699999999876 9999999864
No 37
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.78 E-value=2.8e-18 Score=210.23 Aligned_cols=173 Identities=19% Similarity=0.181 Sum_probs=118.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccC--------------------------CCCCcEEEEecCCCCHHHHHHhcCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFG--------------------------GPSSDWLLALHSSVASVDQKKVFLR 243 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~--------------------------~~~~~~i~~LHs~l~~~eq~~vf~~ 243 (735)
..+.+|||++++..++.+...|....... +...+.+..+||+|+.++|..+++.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 35789999999999999998886532100 0011236789999999999999999
Q ss_pred CCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCc--EEEEceeh
Q 047202 244 PPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPG--ICYSLYTR 321 (735)
Q Consensus 244 ~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G--~c~rL~t~ 321 (735)
+++|..||||||+.+|.||+|++|++||+.| .|.|.+++.||.|||||...| .++ +|..
T Consensus 323 fK~G~LrvLVATssLELGIDIg~VDlVIq~g------------------sP~sVas~LQRiGRAGR~~gg~s~gl-i~p~ 383 (1490)
T PRK09751 323 LKSGELRCVVATSSLELGIDMGAVDLVIQVA------------------TPLSVASGLQRIGRAGHQVGGVSKGL-FFPR 383 (1490)
T ss_pred HHhCCceEEEeCcHHHccCCcccCCEEEEeC------------------CCCCHHHHHHHhCCCCCCCCCccEEE-EEeC
Confidence 9999999999999999999999999999844 256889999999999997443 344 4443
Q ss_pred hhHh---------hhcC-CCCCCcccccchHHHHHHHHHcCCC---chhHhhhhcCCC-C----hHHHHHHHHHHHHH
Q 047202 322 HRYE---------KLMR-PYQVPEMQRMPLVELCLQIKLLSLG---RIKIFLSKALEP-P----KEEAITTAISVLYE 381 (735)
Q Consensus 322 ~~~~---------~~~~-~~~~PEi~r~~L~~l~L~~k~l~~~---~~~~fl~~~l~p-P----~~~~i~~a~~~L~~ 381 (735)
+..+ ..+. ......+...||+-+.-|+.++-.. ++.+.+...-.. | +.+.++..+++|..
T Consensus 384 ~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~~~d~l~~~vrra~pf~~L~~~~f~~vl~~L~~ 461 (1490)
T PRK09751 384 TRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQVDEWYSRVRRAAPWKDLPRRVFDATLDMLSG 461 (1490)
T ss_pred cHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHhc
Confidence 3221 1111 1122345566777666666654321 233322111111 2 56778888888875
No 38
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.78 E-value=5.2e-18 Score=204.39 Aligned_cols=176 Identities=19% Similarity=0.116 Sum_probs=121.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
..+.+|||++++..++.++..|....... ..+..+..+||+|+.++|..+++.+.+|..+|||||+++|.||+||+|++
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~-~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~ 361 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEE-YDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDL 361 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhh-ccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcE
Confidence 35689999999999999999987642100 01345899999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC----CcEEEEceehhhHh------hhcCC-CCCCcccc
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK----PGICYSLYTRHRYE------KLMRP-YQVPEMQR 338 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~----~G~c~rL~t~~~~~------~~~~~-~~~PEi~r 338 (735)
||.. ++ |-|.+++.||+|||||.. .|.+|.+...+-.+ ..... ...+.+..
T Consensus 362 VI~~--------~~----------P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~ 423 (876)
T PRK13767 362 VVLL--------GS----------PKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPK 423 (876)
T ss_pred EEEe--------CC----------CCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 9974 32 346789999999999852 37777754332111 11111 11223445
Q ss_pred cchHHHHHHHHHcCCC---c---hhHhhhhcC--CCChHHHHHHHHHHHHHcCC
Q 047202 339 MPLVELCLQIKLLSLG---R---IKIFLSKAL--EPPKEEAITTAISVLYEVGA 384 (735)
Q Consensus 339 ~~L~~l~L~~k~l~~~---~---~~~fl~~~l--~pP~~~~i~~a~~~L~~lga 384 (735)
.|++-++-|+.++..+ + +.+++..+. .--+.+.+...++.|..-++
T Consensus 424 ~~~dvl~q~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 477 (876)
T PRK13767 424 NPLDVLAQHIVGMAIERPWDIEEAYNIVRRAYPYRDLSDEDFESVLRYLAGDYG 477 (876)
T ss_pred CcHHHHHHHHHHHHHcCCCCHHHHHHHHhccCCcccCCHHHHHHHHHHHhccCc
Confidence 6677777777665322 2 222222211 11145778889999976643
No 39
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.77 E-value=7.7e-18 Score=196.01 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=99.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHH-----HhcCCCCC----Cc-------cEEEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQK-----KVFLRPPE----KI-------RKVII 253 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~-----~vf~~~~~----g~-------rkVIl 253 (735)
..+.+|||+++.++++.+++.|... + +..|||.|++.+|. ++++.|.+ |. .+|+|
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~-------g--~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILV 341 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKE-------K--FELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLV 341 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-------C--CeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEe
Confidence 5689999999999999999999753 2 38999999999999 67776654 33 68999
Q ss_pred eccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEE-EEceehhhHhhhc-CC
Q 047202 254 ATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GIC-YSLYTRHRYEKLM-RP 330 (735)
Q Consensus 254 aTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c-~rL~t~~~~~~~~-~~ 330 (735)
||+++|+||+|+. .+||. ++ ....++.||.||+||.+. |.+ +.+++.+ |.... ..
T Consensus 342 ATdVaerGLDId~-d~VI~--------d~------------aP~esyIQRiGRtgR~G~~~~~~i~vv~~~-~~~~~~~~ 399 (844)
T TIGR02621 342 CTSAGEVGVNISA-DHLVC--------DL------------APFESMQQRFGRVNRFGELQACQIAVVHLD-LGKDQDFD 399 (844)
T ss_pred ccchhhhcccCCc-ceEEE--------CC------------CCHHHHHHHhcccCCCCCCCCceEEEEeec-cCCCcccC
Confidence 9999999999997 66664 11 124789999999999865 222 3333221 11110 11
Q ss_pred CCCCcccccchHHHHHHHHHcCCCchhHh
Q 047202 331 YQVPEMQRMPLVELCLQIKLLSLGRIKIF 359 (735)
Q Consensus 331 ~~~PEi~r~~L~~l~L~~k~l~~~~~~~f 359 (735)
...||+++..+..+.+..+..+..+...|
T Consensus 400 vY~~~~l~~t~~~L~~~~~~~~~~~~~al 428 (844)
T TIGR02621 400 VYGKKIDKSTWSTLKKLQQLKGKNKRAAL 428 (844)
T ss_pred CCCHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 23478888888777776666665555444
No 40
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.77 E-value=6.7e-18 Score=201.76 Aligned_cols=111 Identities=23% Similarity=0.308 Sum_probs=95.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
..|.++||+|..++++.+.+.|.... +++.+..+||+|+++++.++++.|..|+.+|+|||+|+|+||+||+|.+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~-----p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~ 733 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV-----PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANT 733 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC-----CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCE
Confidence 46899999999999999999998642 2467999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRH 322 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~ 322 (735)
||. |++.. .+-+++.||+||+||.+ .|.||-+++..
T Consensus 734 VIi--------~~a~~---------~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 734 III--------ERADK---------FGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred EEE--------ecCCC---------CCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 996 34322 12456789999999976 59999998753
No 41
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=9.8e-18 Score=166.75 Aligned_cols=122 Identities=16% Similarity=0.301 Sum_probs=107.3
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE 259 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE 259 (735)
+.++.+..+..-...+||+++..-++.+.+.+++. .+.|-.+||.|+++||.+++..|+.|.-+|+++|++-.
T Consensus 255 dtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~-------nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwa 327 (400)
T KOG0328|consen 255 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA-------NFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWA 327 (400)
T ss_pred hHHHHHhhhhehheEEEEecccchhhHHHHHHHhh-------CceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhh
Confidence 55666666656668899999999999999999865 57899999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhHhh
Q 047202 260 TSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRYEK 326 (735)
Q Consensus 260 tsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~~~ 326 (735)
+|++||.|..||| ||-. ..+..|.||.||+||.+. |+.+.....++.+.
T Consensus 328 RGiDv~qVslviN--------YDLP----------~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 328 RGIDVQQVSLVIN--------YDLP----------NNRELYIHRIGRSGRFGRKGVAINFVKSDDLRI 377 (400)
T ss_pred ccCCcceeEEEEe--------cCCC----------ccHHHHhhhhccccccCCcceEEEEecHHHHHH
Confidence 9999999999999 7743 346788999999999876 99999998877654
No 42
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.76 E-value=2.6e-18 Score=181.68 Aligned_cols=140 Identities=18% Similarity=0.283 Sum_probs=111.6
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE 259 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE 259 (735)
..+.++..+...+.++||+|+++.++-....+.... .+..++.+||.|.+.+|.++++.|.+...-|++||+||.
T Consensus 244 ~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l-----~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaA 318 (567)
T KOG0345|consen 244 SQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL-----KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAA 318 (567)
T ss_pred HHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh-----CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhh
Confidence 344455555567899999999999998877776542 246799999999999999999999888888999999999
Q ss_pred cCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-c--EEEEceehhhHhhhcCCCCCCcc
Q 047202 260 TSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-G--ICYSLYTRHRYEKLMRPYQVPEM 336 (735)
Q Consensus 260 tsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G--~c~rL~t~~~~~~~~~~~~~PEi 336 (735)
+||+||||++||. |||....+ +..||+||+||.+. | +.|-+=.++.|..+|.-...||+
T Consensus 319 RGlDip~iD~VvQ--------~DpP~~~~----------~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~l 380 (567)
T KOG0345|consen 319 RGLDIPGIDLVVQ--------FDPPKDPS----------SFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVEL 380 (567)
T ss_pred ccCCCCCceEEEe--------cCCCCChh----------HHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccch
Confidence 9999999999998 88877644 45599998877654 4 56666677888888877777877
Q ss_pred cccchH
Q 047202 337 QRMPLV 342 (735)
Q Consensus 337 ~r~~L~ 342 (735)
.+...+
T Consensus 381 e~~~~e 386 (567)
T KOG0345|consen 381 ERIDTE 386 (567)
T ss_pred hhhccc
Confidence 665443
No 43
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.75 E-value=1.8e-17 Score=193.21 Aligned_cols=112 Identities=21% Similarity=0.170 Sum_probs=98.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
..+..|||+++..+++.+++.|... ++.+.++||+|+.++|..+.+.|..|..+|||||++++.||++|||++
T Consensus 223 ~~~~~IIf~~sr~~~e~la~~L~~~-------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~ 295 (591)
T TIGR01389 223 RGQSGIIYASSRKKVEELAERLESQ-------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRF 295 (591)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhC-------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCE
Confidence 3568899999999999999999753 466899999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
||+.+ + |-|..++.||+|||||.+ +|.|+.+|+..++..
T Consensus 296 VI~~~--------~----------p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~ 335 (591)
T TIGR01389 296 VIHYD--------M----------PGNLESYYQEAGRAGRDGLPAEAILLYSPADIAL 335 (591)
T ss_pred EEEcC--------C----------CCCHHHHhhhhccccCCCCCceEEEecCHHHHHH
Confidence 99844 3 335678899999999987 599999999877543
No 44
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.75 E-value=2.3e-17 Score=180.98 Aligned_cols=108 Identities=20% Similarity=0.231 Sum_probs=87.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHH----hcCCCCCCccEEEEeccccccCCCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKK----VFLRPPEKIRKVIIATNIAETSITID 265 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~----vf~~~~~g~rkVIlaTnIAEtsitIp 265 (735)
.++.+|||+++.++++.+.+.|.... ....+..+||++++.+|.+ +++.+..|..+|+|||+++|+||+||
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~-----~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~ 295 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENA-----PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS 295 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhc-----CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC
Confidence 46899999999999999999997652 1246999999999999876 47888899999999999999999996
Q ss_pred CeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-----cEEEEceehhh
Q 047202 266 DVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-----GICYSLYTRHR 323 (735)
Q Consensus 266 dV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-----G~c~rL~t~~~ 323 (735)
+.+||. | +.+-.++.||+||+||.+. |..|-++....
T Consensus 296 -~~~vi~--------~------------~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 296 -ADVMIT--------E------------LAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred -CCEEEE--------c------------CCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 667774 2 2235689999999999753 37777776554
No 45
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.74 E-value=3e-17 Score=193.24 Aligned_cols=109 Identities=19% Similarity=0.293 Sum_probs=89.3
Q ss_pred CCCcEEEEcCCHHH--------HHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccC
Q 047202 190 GEGAILVFLPGVAE--------IHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETS 261 (735)
Q Consensus 190 ~~g~iLVFlpg~~e--------I~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEts 261 (735)
..+.++||+|..++ ++.+++.|.... +++.+..+||+|++++|+++++.|..|..+|+|||+++|.|
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~-----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 544 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAF-----PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVG 544 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHC-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeC
Confidence 45689999996543 445566665442 13679999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEcee
Q 047202 262 ITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYT 320 (735)
Q Consensus 262 itIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t 320 (735)
|+||++++||. |++.. .+-+++.||+||+||.+ +|.||-+++
T Consensus 545 iDip~v~~VIi--------~~~~r---------~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 545 VDVPNATVMVI--------ENAER---------FGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred cccCCCcEEEE--------eCCCC---------CCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999997 55432 13467889999999976 599999986
No 46
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.74 E-value=1.5e-17 Score=202.71 Aligned_cols=110 Identities=21% Similarity=0.254 Sum_probs=92.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
..|.++||+|..+.++.+.+.|.... ++..+..+||+|++++|.+++..|..|+.+|+|||+|+|+||+||+|.+
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~-----p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~ 882 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELV-----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC-----CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCE
Confidence 36899999999999999999998653 2456899999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceeh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTR 321 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~ 321 (735)
||- +++.+ -+-+++.||+||+||.+. |.||-+++.
T Consensus 883 VIi--------~~ad~---------fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 883 III--------ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred EEE--------ecCCC---------CCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 992 11111 123568999999999764 999987754
No 47
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.73 E-value=5.8e-18 Score=150.74 Aligned_cols=100 Identities=41% Similarity=0.710 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCCCCCCCCHhhhhhccCCCchHHHHHHHhhcccCChhHHHHHHhhhccCCCcccCcchhHHHH--HHHH
Q 047202 374 TAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVE--RAKL 451 (735)
Q Consensus 374 ~a~~~L~~lgal~~~~~lT~lG~~l~~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~~f~~~~~~~~~~~--~~k~ 451 (735)
+|++.|+.+||||.+++||++|+.|+.||++|++||||++|+.+||++++++|||+|++++||..+.+.++..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999865544333 2343
Q ss_pred HHhhhhhccCCCCCCCCCCCcHHHHH
Q 047202 452 ALLTDKLEGLSDSNDSSTQSDHLVLM 477 (735)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~sDhl~~l 477 (735)
+|... .......+..|||++++
T Consensus 81 ~~~~~----~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIK----QARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT--------------BTTBHHHHHH
T ss_pred Hhhhh----hcccccCCCCCCHHhcC
Confidence 33100 00011234789999986
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.73 E-value=4.5e-17 Score=190.50 Aligned_cols=109 Identities=19% Similarity=0.316 Sum_probs=89.2
Q ss_pred CCCcEEEEcCCHH--------HHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccC
Q 047202 190 GEGAILVFLPGVA--------EIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETS 261 (735)
Q Consensus 190 ~~g~iLVFlpg~~--------eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEts 261 (735)
..+.++||+|..+ .++.+++.|.... +++.+..+||+|++++|..+++.|..|..+|+|||+++|+|
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 521 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-----PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhC-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecC
Confidence 3568999999764 3445566665432 25679999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEcee
Q 047202 262 ITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYT 320 (735)
Q Consensus 262 itIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t 320 (735)
|+||++++||. |++.. .+-+++.||+|||||.+ +|.||.++.
T Consensus 522 vDiP~v~~VIi--------~~~~r---------~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 522 VDVPNATVMVI--------EDAER---------FGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cccCCCcEEEE--------eCCCc---------CCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999999996 55432 13568899999999976 699999983
No 49
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.72 E-value=3.4e-17 Score=175.15 Aligned_cols=114 Identities=23% Similarity=0.320 Sum_probs=99.8
Q ss_pred HHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCC
Q 047202 185 VDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITI 264 (735)
Q Consensus 185 i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitI 264 (735)
|.+......|+||++..+.++.+++.|... ++.+..|||+-++++|..+++.++.|.-.|+||||+|.+||+|
T Consensus 511 il~~~~~ppiIIFvN~kk~~d~lAk~LeK~-------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDI 583 (673)
T KOG0333|consen 511 ILESNFDPPIIIFVNTKKGADALAKILEKA-------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDI 583 (673)
T ss_pred HHHhCCCCCEEEEEechhhHHHHHHHHhhc-------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence 333345668999999999999999999865 5889999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhh
Q 047202 265 DDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHR 323 (735)
Q Consensus 265 pdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~ 323 (735)
|||.+||+ ||-.. |-..|.||.||+||.+. |.+..+||.++
T Consensus 584 pnVSlVin--------ydmak----------sieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 584 PNVSLVIN--------YDMAK----------SIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred Cccceeee--------cchhh----------hHHHHHHHhccccccccCceeEEEeccch
Confidence 99999999 55322 33457799999999987 99999999886
No 50
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.72 E-value=3.3e-16 Score=183.72 Aligned_cols=321 Identities=20% Similarity=0.198 Sum_probs=202.7
Q ss_pred CCCCccEEEEcccc----c-CCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCCCCeEeeCCceec
Q 047202 11 NLTGVTHVIVDEVH----E-RSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGDCPVITAEGRTHP 84 (735)
Q Consensus 11 ~L~~~s~vIiDEvH----E-R~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~~pvi~i~gr~~p 84 (735)
++..++.||||||| + |+.-.+.+...++... +..|+|..|||+ |.+.+++|.+.-++ .+..+|
T Consensus 143 ~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~--------~~~rivgLSATlpN~~evA~wL~a~~~---~~~~rp 211 (766)
T COG1204 143 WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN--------ELIRIVGLSATLPNAEEVADWLNAKLV---ESDWRP 211 (766)
T ss_pred hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC--------cceEEEEEeeecCCHHHHHHHhCCccc---ccCCCC
Confidence 68899999999999 4 8877777766665433 458999999999 99999999986544 233334
Q ss_pred ceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHHHHH
Q 047202 85 VTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQTRQN 164 (735)
Q Consensus 85 V~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (735)
+.-+- ...+. ..+-...|+..
T Consensus 212 ~~l~~-~v~~~----------------------~~~~~~~~~~k------------------------------------ 232 (766)
T COG1204 212 VPLRR-GVPYV----------------------GAFLGADGKKK------------------------------------ 232 (766)
T ss_pred ccccc-CCccc----------------------eEEEEecCccc------------------------------------
Confidence 43110 00000 00000000000
Q ss_pred hhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhh---------h--------ccCC--C-C---
Q 047202 165 LKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAAS---------Y--------RFGG--P-S--- 221 (735)
Q Consensus 165 ~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~---------~--------~~~~--~-~--- 221 (735)
......+...+..++..+ ...|.+|||+|++.+....++.|... . .+.. . .
T Consensus 233 ---~~~~~~~~~~~~~v~~~~---~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 306 (766)
T COG1204 233 ---TWPLLIDNLALELVLESL---AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSED 306 (766)
T ss_pred ---cccccchHHHHHHHHHHH---hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccch
Confidence 000011111222222222 25789999999999998888777620 0 0000 0 0
Q ss_pred -------CcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEe
Q 047202 222 -------SDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDW 294 (735)
Q Consensus 222 -------~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~ 294 (735)
..-+..+|++|+.++|+-+.+.|+.|+.|||+||+....||+.|.-++||-. ..+||+..+ .+.
T Consensus 307 ~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~----~~~y~~~~g-----~~~ 377 (766)
T COG1204 307 EELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKD----TRRYDPKGG-----IVD 377 (766)
T ss_pred HHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEee----eEEEcCCCC-----eEE
Confidence 0237789999999999999999999999999999999999999998888831 345777332 578
Q ss_pred ehHhhHHHhcCcCCCCCC---cEEEEce-eh--hhHhhhcCCCCCCcccccch------HHHHHHHHHcCC----CchhH
Q 047202 295 ISQANARQRRGRAGRVKP---GICYSLY-TR--HRYEKLMRPYQVPEMQRMPL------VELCLQIKLLSL----GRIKI 358 (735)
Q Consensus 295 iSkasa~QR~GRAGR~~~---G~c~rL~-t~--~~~~~~~~~~~~PEi~r~~L------~~l~L~~k~l~~----~~~~~ 358 (735)
+++-...|+.|||||.+= |..+-+- +. ..|.........||....-| ...++.+.+.+. .....
T Consensus 378 i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~ 457 (766)
T COG1204 378 IPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTD 457 (766)
T ss_pred CchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHH
Confidence 999999999999999862 4444444 21 12211122345565521111 111111111111 12344
Q ss_pred hhhhcCCCCh-------HHHHHHHHHHHHHcC-CCCCC---CCCCHhhhhhccCCCchHHHHHHHhhcc
Q 047202 359 FLSKALEPPK-------EEAITTAISVLYEVG-AIEGD---EELTPLGHHLAKLPVDVLIGKMMLFGGI 416 (735)
Q Consensus 359 fl~~~l~pP~-------~~~i~~a~~~L~~lg-al~~~---~~lT~lG~~l~~lp~~p~~~k~l~~~~~ 416 (735)
|+..+.-.|. ...+.++++.|.+.+ .++.. -.-|.+|+.++++.++|..++.+.....
T Consensus 458 f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~ 526 (766)
T COG1204 458 FYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLA 526 (766)
T ss_pred HHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHH
Confidence 5545554443 466889999999986 55443 3688999999999999999999887654
No 51
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.71 E-value=2.4e-16 Score=172.13 Aligned_cols=88 Identities=16% Similarity=0.205 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
.+++.+|||+++..+++.+++.|.... .++.+..+||.+++.+|.++. ...|+|||++||+||+||++
T Consensus 270 ~~~~k~LIf~nt~~~~~~l~~~L~~~~-----~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~- 337 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQG-----LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD- 337 (357)
T ss_pred cCCCeEEEEECCHHHHHHHHHHHhhhC-----CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-
Confidence 356789999999999999999997531 135688999999999988764 46799999999999999987
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCC
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAG 308 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAG 308 (735)
+|| ++ +.+.+++.||+||+|
T Consensus 338 ~vi---------~~-----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 338 WLI---------FS-----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred eEE---------EC-----------CCCHHHHhhhcccCC
Confidence 555 12 235678999999998
No 52
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=5.9e-17 Score=168.28 Aligned_cols=203 Identities=21% Similarity=0.333 Sum_probs=148.0
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCCh--HHHH-hhhCCCCeEeeCCce-----
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDS--NLFS-RYFGDCPVITAEGRT----- 82 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~--~~f~-~yF~~~pvi~i~gr~----- 82 (735)
+|.+++++||||++ |.+++.|--.+-|-++..| |+.+.|+.|||-.. ..++ +|.. -|++..-|..
T Consensus 364 ~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiR-----PDRqtvmTSATWP~~VrrLa~sY~K-ep~~v~vGsLdL~a~ 436 (629)
T KOG0336|consen 364 NLASITYLVLDEAD-RMLDMGFEPQIRKILLDIR-----PDRQTVMTSATWPEGVRRLAQSYLK-EPMIVYVGSLDLVAV 436 (629)
T ss_pred eeeeeEEEEecchh-hhhcccccHHHHHHhhhcC-----CcceeeeecccCchHHHHHHHHhhh-CceEEEecccceeee
Confidence 58999999999997 7888888877777777777 78999999999843 4554 6776 4666555542
Q ss_pred ecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHHH
Q 047202 83 HPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQTR 162 (735)
Q Consensus 83 ~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (735)
..|+.+++-.
T Consensus 437 ~sVkQ~i~v~---------------------------------------------------------------------- 446 (629)
T KOG0336|consen 437 KSVKQNIIVT---------------------------------------------------------------------- 446 (629)
T ss_pred eeeeeeEEec----------------------------------------------------------------------
Confidence 2233222100
Q ss_pred HHhhhccccccchHHHHHHHHHH-HccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhc
Q 047202 163 QNLKRLNEDVIDYDLLEDLVCHV-DETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVF 241 (735)
Q Consensus 163 ~~~~~~~~~~i~~~li~~ll~~i-~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf 241 (735)
-|.+. ..++..+ ....+...++||+....-.+.|...+. . .++..-.|||+-.+.+|++++
T Consensus 447 ----------~d~~k-~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~----l---~gi~~q~lHG~r~Q~DrE~al 508 (629)
T KOG0336|consen 447 ----------TDSEK-LEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFC----L---KGISSQSLHGNREQSDREMAL 508 (629)
T ss_pred ----------ccHHH-HHHHHHHHHhcCCCceEEEEEechhhhhhccchhh----h---cccchhhccCChhhhhHHHHH
Confidence 00000 1122222 233466789999987765544433222 1 146678899999999999999
Q ss_pred CCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEcee
Q 047202 242 LRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYT 320 (735)
Q Consensus 242 ~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t 320 (735)
+.++.|..+|+|||++|.+|+++|||++|++ ||-..+++ .|.||.||+||.+. |....++|
T Consensus 509 ~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yDFP~nIe----------eYVHRvGrtGRaGr~G~sis~lt 570 (629)
T KOG0336|consen 509 EDFKSGEVRILVATDLASRGLDVPDITHVYN--------YDFPRNIE----------EYVHRVGRTGRAGRTGTSISFLT 570 (629)
T ss_pred HhhhcCceEEEEEechhhcCCCchhcceeec--------cCCCccHH----------HHHHHhcccccCCCCcceEEEEe
Confidence 9999999999999999999999999999999 77655544 56699999999876 99999999
Q ss_pred hhhHhh
Q 047202 321 RHRYEK 326 (735)
Q Consensus 321 ~~~~~~ 326 (735)
+.+...
T Consensus 571 ~~D~~~ 576 (629)
T KOG0336|consen 571 RNDWSM 576 (629)
T ss_pred hhhHHH
Confidence 887643
No 53
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=1.1e-16 Score=165.11 Aligned_cols=204 Identities=19% Similarity=0.224 Sum_probs=149.5
Q ss_pred CCCCccEEEEcccccCCccH----HHHHHHHHHHHHhhccCCCCCcEEEEecCCCCh--HHHH-hhhCCCCeEeeCCc--
Q 047202 11 NLTGVTHVIVDEVHERSLLG----DFLLIVLKDLLEKQSAHDTPKLKVILMSATVDS--NLFS-RYFGDCPVITAEGR-- 81 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~t----D~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~--~~f~-~yF~~~pvi~i~gr-- 81 (735)
+++.+.++++||++- .+++ |--+-+ ++.++ ++.+++|+|||.+- ..|+ +...++.++.+..+
T Consensus 229 d~~kikvfVlDEAD~-Mi~tqG~~D~S~rI-~~~lP-------~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel 299 (477)
T KOG0332|consen 229 DLEKIKVFVLDEADV-MIDTQGFQDQSIRI-MRSLP-------RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREEL 299 (477)
T ss_pred ChhhceEEEecchhh-hhhcccccccchhh-hhhcC-------CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhc
Confidence 377899999999963 2222 222222 22221 47899999999953 3554 44556666666543
Q ss_pred -eecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHH
Q 047202 82 -THPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQ 160 (735)
Q Consensus 82 -~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (735)
.++|..+|+.-..+
T Consensus 300 ~L~~IkQlyv~C~~~----------------------------------------------------------------- 314 (477)
T KOG0332|consen 300 ALDNIKQLYVLCACR----------------------------------------------------------------- 314 (477)
T ss_pred cccchhhheeeccch-----------------------------------------------------------------
Confidence 47787777642100
Q ss_pred HHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHh
Q 047202 161 TRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKV 240 (735)
Q Consensus 161 ~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~v 240 (735)
+-.-+++..+.....-|..+||+-+.+.+..+++.|.+. +..|..|||.|..++|.++
T Consensus 315 ---------------~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~-------Gh~V~~l~G~l~~~~R~~i 372 (477)
T KOG0332|consen 315 ---------------DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE-------GHQVSLLHGDLTVEQRAAI 372 (477)
T ss_pred ---------------hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc-------CceeEEeeccchhHHHHHH
Confidence 001134444555556789999999999999999999765 6789999999999999999
Q ss_pred cCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEce
Q 047202 241 FLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLY 319 (735)
Q Consensus 241 f~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~ 319 (735)
.+.|+.|.-||+++||+..+||+++.|..|||..++ ..-. .--.-..|.||.||+||.|. |..|.|.
T Consensus 373 i~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP--------~~~~----~~pD~etYlHRiGRtGRFGkkG~a~n~v 440 (477)
T KOG0332|consen 373 IDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLP--------VKYT----GEPDYETYLHRIGRTGRFGKKGLAINLV 440 (477)
T ss_pred HHHHhcCcceEEEEechhhcccccceEEEEEecCCc--------cccC----CCCCHHHHHHHhcccccccccceEEEee
Confidence 999999999999999999999999999999995443 2211 11345678899999999987 9999987
Q ss_pred ehh
Q 047202 320 TRH 322 (735)
Q Consensus 320 t~~ 322 (735)
...
T Consensus 441 ~~~ 443 (477)
T KOG0332|consen 441 DDK 443 (477)
T ss_pred ccc
Confidence 654
No 54
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.68 E-value=1.7e-16 Score=168.80 Aligned_cols=123 Identities=25% Similarity=0.419 Sum_probs=107.5
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
...+++|+.+....|++|+|+.-.++.+.++..|... ++.|..||+.+.+.+|.+++..|+.+...|++||++
T Consensus 455 l~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk-------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDv 527 (731)
T KOG0339|consen 455 LNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLK-------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDV 527 (731)
T ss_pred HHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccc-------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeH
Confidence 3456778877778999999999999999999888654 688999999999999999999999998999999999
Q ss_pred cccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhHh
Q 047202 258 AETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRYE 325 (735)
Q Consensus 258 AEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~~ 325 (735)
|.+|+||++++-||+ ||-...+.. ..||.||.||.+. |+.|.|.|+.+-+
T Consensus 528 aargldI~~ikTVvn--------yD~ardIdt----------hthrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 528 AARGLDIPSIKTVVN--------YDFARDIDT----------HTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred hhcCCCccccceeec--------ccccchhHH----------HHHHhhhcccccccceeeEEechhhHH
Confidence 999999999999999 665555543 3499999999987 9999999987654
No 55
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.65 E-value=2.9e-15 Score=173.75 Aligned_cols=263 Identities=22% Similarity=0.219 Sum_probs=180.1
Q ss_pred CCCCccEEEEccccc-----CCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCC----CCeEeeCC
Q 047202 11 NLTGVTHVIVDEVHE-----RSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGD----CPVITAEG 80 (735)
Q Consensus 11 ~L~~~s~vIiDEvHE-----R~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~----~pvi~i~g 80 (735)
.|.++.+|||||+|| |+...-+.|.-|+.+. ++++-|..|||. +.+..++|+.+ |.++.+++
T Consensus 146 ~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~--------~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~ 217 (814)
T COG1201 146 LLRDVRYVIVDEIHALAESKRGVQLALSLERLRELA--------GDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSA 217 (814)
T ss_pred HhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC--------cccEEEeehhccCCHHHHHHHhcCCCCceEEEEccc
Confidence 488999999999996 8888777777777665 369999999999 88899999865 34555544
Q ss_pred -ceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccH
Q 047202 81 -RTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSE 159 (735)
Q Consensus 81 -r~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (735)
+.+.+++.....-.+ |.
T Consensus 218 ~k~~~i~v~~p~~~~~--------------------------------------~~------------------------ 235 (814)
T COG1201 218 AKKLEIKVISPVEDLI--------------------------------------YD------------------------ 235 (814)
T ss_pred CCcceEEEEecCCccc--------------------------------------cc------------------------
Confidence 333333333221000 00
Q ss_pred HHHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHH
Q 047202 160 QTRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKK 239 (735)
Q Consensus 160 ~~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~ 239 (735)
+ .........+..+.+ .....|||.+++...+.+...|.... ...+..+||+|+.++|..
T Consensus 236 -----------~-~~~~~~~~~i~~~v~--~~~ttLIF~NTR~~aE~l~~~L~~~~------~~~i~~HHgSlSre~R~~ 295 (814)
T COG1201 236 -----------E-ELWAALYERIAELVK--KHRTTLIFTNTRSGAERLAFRLKKLG------PDIIEVHHGSLSRELRLE 295 (814)
T ss_pred -----------c-chhHHHHHHHHHHHh--hcCcEEEEEeChHHHHHHHHHHHHhc------CCceeeecccccHHHHHH
Confidence 0 000111122333333 34589999999999999999998763 245899999999999999
Q ss_pred hcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCC----CCcEE
Q 047202 240 VFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRV----KPGIC 315 (735)
Q Consensus 240 vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~----~~G~c 315 (735)
+.+.+++|..|+||||.-.|-||||.+|+.||. |. .|-|-+...||.||||+. ..|+.
T Consensus 296 vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq--------~~----------SP~sV~r~lQRiGRsgHr~~~~Skg~i 357 (814)
T COG1201 296 VEERLKEGELKAVVATSSLELGIDIGDIDLVIQ--------LG----------SPKSVNRFLQRIGRAGHRLGEVSKGII 357 (814)
T ss_pred HHHHHhcCCceEEEEccchhhccccCCceEEEE--------eC----------CcHHHHHHhHhccccccccCCcccEEE
Confidence 999999999999999999999999999999998 33 344667788999999974 23666
Q ss_pred EEceehhhHhhh-------cCCCCCCcccccchHHHHHHHHHcCCCc---hh---HhhhhcC--CCChHHHHHHHHHHHH
Q 047202 316 YSLYTRHRYEKL-------MRPYQVPEMQRMPLVELCLQIKLLSLGR---IK---IFLSKAL--EPPKEEAITTAISVLY 380 (735)
Q Consensus 316 ~rL~t~~~~~~~-------~~~~~~PEi~r~~L~~l~L~~k~l~~~~---~~---~fl~~~l--~pP~~~~i~~a~~~L~ 380 (735)
|...-.+..+.. -.....++|..-||+-+.-|+.++-+.. +. .++..+- .-=+.+.+...++.|.
T Consensus 358 i~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y~~vrraypy~~L~~e~f~~v~~~l~ 437 (814)
T COG1201 358 IAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAYRVVRRAYPYADLSREDFRLVLRYLA 437 (814)
T ss_pred EecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHHHHHHhccccccCCHHHHHHHHHHHh
Confidence 555422222211 1123468888999998888877654332 22 2221110 1114577888888887
Q ss_pred H
Q 047202 381 E 381 (735)
Q Consensus 381 ~ 381 (735)
.
T Consensus 438 ~ 438 (814)
T COG1201 438 G 438 (814)
T ss_pred h
Confidence 7
No 56
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.63 E-value=5.4e-16 Score=135.58 Aligned_cols=90 Identities=42% Similarity=0.770 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCCCCCCCCCHhhhhhccCCCchHHHHHHHhhccc-CChhHHHHHHhhhccCCCcccCcchhHHHHHHHHH
Q 047202 374 TAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIF-GCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLA 452 (735)
Q Consensus 374 ~a~~~L~~lgal~~~~~lT~lG~~l~~lp~~p~~~k~l~~~~~~-~c~~~~l~iaa~ls~~~~f~~~~~~~~~~~~~k~~ 452 (735)
+|++.|+.+||||.+++||++|+.|++||++|++||||+.|+.+ +|.+++++|+|++++.++|..+ ..+......+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999 9999999999999999998876 444455555555
Q ss_pred HhhhhhccCCCCCCCCC-CCcHHHHH
Q 047202 453 LLTDKLEGLSDSNDSST-QSDHLVLM 477 (735)
Q Consensus 453 ~~~~~~~~~~~~~~~~~-~sDhl~~l 477 (735)
|. .. .|||++++
T Consensus 80 ~~-------------~~~~~D~~~~l 92 (92)
T smart00847 80 FA-------------SGRESDHLTLL 92 (92)
T ss_pred cc-------------CCCCCChhhhC
Confidence 52 13 79999863
No 57
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=2.5e-15 Score=152.01 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=101.2
Q ss_pred HHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccccc
Q 047202 181 LVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAET 260 (735)
Q Consensus 181 ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEt 260 (735)
.+..+.....-...+||+++...++.+++.+.+. ++..+..|+.|.+++|.+||..|+.|..+.+|||+..-+
T Consensus 312 CLntLfskLqINQsIIFCNS~~rVELLAkKITel-------GyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TR 384 (459)
T KOG0326|consen 312 CLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL-------GYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTR 384 (459)
T ss_pred hHHHHHHHhcccceEEEeccchHhHHHHHHHHhc-------cchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhc
Confidence 3333333334557899999999999999988765 567888999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhHhh
Q 047202 261 SITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRYEK 326 (735)
Q Consensus 261 sitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~~~ 326 (735)
||+|+.|.+|||+.++| +-.+|.+|.||+||.+. |..+.|.|-++-.+
T Consensus 385 GIDiqavNvVINFDfpk------------------~aEtYLHRIGRsGRFGhlGlAInLityedrf~ 433 (459)
T KOG0326|consen 385 GIDIQAVNVVINFDFPK------------------NAETYLHRIGRSGRFGHLGLAINLITYEDRFN 433 (459)
T ss_pred ccccceeeEEEecCCCC------------------CHHHHHHHccCCccCCCcceEEEEEehhhhhh
Confidence 99999999999966554 23456799999999986 99999999765444
No 58
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.59 E-value=1.1e-14 Score=149.75 Aligned_cols=110 Identities=22% Similarity=0.354 Sum_probs=94.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
+.|+|.||++...+++.+...|... .+.+..|||.|++.+|..++.+|+.+..+|++||++|.+|++||.|..
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~l-------e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~L 325 (442)
T KOG0340|consen 253 ENGSIMIFVNTTRECQLLSMTLKNL-------EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVEL 325 (442)
T ss_pred cCceEEEEeehhHHHHHHHHHHhhh-------ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeE
Confidence 6899999999999999998888754 578999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhH
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRY 324 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~ 324 (735)
|||...++. .-.|.||.||+.|.|. |..+.++|+.+-
T Consensus 326 VvN~diPr~------------------P~~yiHRvGRtARAGR~G~aiSivt~rDv 363 (442)
T KOG0340|consen 326 VVNHDIPRD------------------PKDYIHRVGRTARAGRKGMAISIVTQRDV 363 (442)
T ss_pred EEecCCCCC------------------HHHHHHhhcchhcccCCcceEEEechhhH
Confidence 999444332 3356789999888766 888888886544
No 59
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.57 E-value=3.8e-14 Score=151.48 Aligned_cols=109 Identities=18% Similarity=0.273 Sum_probs=96.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
....|+||+|+..-+.-+++.|... .+.|.-+||++++..|..+|..|.+...=|+||||||.+|++||+|+.
T Consensus 329 ~~~KiiVF~sT~~~vk~~~~lL~~~-------dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~ 401 (543)
T KOG0342|consen 329 KRYKIIVFFSTCMSVKFHAELLNYI-------DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDW 401 (543)
T ss_pred CCceEEEEechhhHHHHHHHHHhhc-------CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceE
Confidence 3479999999999999999888743 467999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHR 323 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~ 323 (735)
||. ||+... ..+|.||.||+||.+. |..+-+....+
T Consensus 402 VvQ--------~~~P~d----------~~~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 402 VVQ--------YDPPSD----------PEQYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred EEE--------eCCCCC----------HHHHHHHhccccccCCCceEEEEeChhH
Confidence 998 776554 6789999999999875 99988777654
No 60
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=2.3e-14 Score=155.43 Aligned_cols=103 Identities=22% Similarity=0.329 Sum_probs=92.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEe
Q 047202 193 AILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFD 272 (735)
Q Consensus 193 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VID 272 (735)
.+|||+.+...+..+...|... ++...++||..++.||.+++..|+.|...|+||||||++|++||+|++||+
T Consensus 339 ~tlvFvEt~~~~d~l~~~l~~~-------~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn 411 (482)
T KOG0335|consen 339 KTLVFVETKRGADELAAFLSSN-------GYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN 411 (482)
T ss_pred eEEEEeeccchhhHHHHHHhcC-------CCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE
Confidence 7999999999999998888754 567899999999999999999999999999999999999999999999999
Q ss_pred CCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEcee
Q 047202 273 CGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYT 320 (735)
Q Consensus 273 sG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t 320 (735)
||-.... -.|.||.||+||.+. |...-+|.
T Consensus 412 --------yDmP~d~----------d~YvHRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 412 --------YDMPADI----------DDYVHRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred --------eecCcch----------hhHHHhccccccCCCCceeEEEec
Confidence 7754443 356799999999987 99999988
No 61
>PRK09694 helicase Cas3; Provisional
Probab=99.55 E-value=5.2e-14 Score=166.99 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHH----HhcCCC-CCCc---cEEEEeccccccC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQK----KVFLRP-PEKI---RKVIIATNIAETS 261 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~----~vf~~~-~~g~---rkVIlaTnIAEts 261 (735)
.++.+|||+|+.+++..+++.|.... .....+..+||.++..+|+ ++++.+ +.|+ .+|+|||+|+|.|
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~----~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~G 634 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELN----NTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQS 634 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhC----CCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhe
Confidence 56789999999999999999997542 1135699999999999884 456555 5555 4899999999999
Q ss_pred CCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC
Q 047202 262 ITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK 311 (735)
Q Consensus 262 itIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~ 311 (735)
||| |+++||.- -+...++.||+||+||.+
T Consensus 635 LDI-d~DvlItd--------------------laPidsLiQRaGR~~R~~ 663 (878)
T PRK09694 635 LDL-DFDWLITQ--------------------LCPVDLLFQRLGRLHRHH 663 (878)
T ss_pred eec-CCCeEEEC--------------------CCCHHHHHHHHhccCCCC
Confidence 999 57877741 123468999999999974
No 62
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.55 E-value=3.7e-14 Score=152.74 Aligned_cols=124 Identities=20% Similarity=0.250 Sum_probs=102.5
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE 259 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE 259 (735)
+++.....+.....+|||+.+..++.-+++..... .++..++.|||.|++..|..+|..|-...--|+.||+||.
T Consensus 302 ~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-----rpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~a 376 (758)
T KOG0343|consen 302 DMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-----RPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAA 376 (758)
T ss_pred HHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-----CCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhh
Confidence 33433444556778999999999999999887654 3467899999999999999999999776777999999999
Q ss_pred cCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhHhh
Q 047202 260 TSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRYEK 326 (735)
Q Consensus 260 tsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~~~ 326 (735)
+|+++|.|..||. || +|...+.|.||+||+.|... |.|+-+.+.+.-+.
T Consensus 377 RGLDFpaVdwViQ--------~D----------CPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 377 RGLDFPAVDWVIQ--------VD----------CPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred ccCCCcccceEEE--------ec----------CchhHHHHHHHhhhhhcccCCCceEEEEcchhHHH
Confidence 9999999999997 55 45567788999999999765 99999888766433
No 63
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.52 E-value=2.8e-14 Score=152.38 Aligned_cols=109 Identities=21% Similarity=0.194 Sum_probs=92.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
-...++||+-+.+.+..+.-.|--. ++.+--|||+|++++|..+++.|+++...|+|||++|.+|++|++|..
T Consensus 425 f~~~~ivFv~tKk~AHRl~IllGLl-------gl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~t 497 (691)
T KOG0338|consen 425 FQDRTIVFVRTKKQAHRLRILLGLL-------GLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQT 497 (691)
T ss_pred cccceEEEEehHHHHHHHHHHHHHh-------hchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeE
Confidence 4668999999999988875544322 567888999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHR 323 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~ 323 (735)
||| |+ .|.+-..|.||.||+.|.|. |....|..+++
T Consensus 498 VIN--------y~----------mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 498 VIN--------YA----------MPKTIEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred EEe--------cc----------CchhHHHHHHHhhhhhhcccCcceEEEecccc
Confidence 999 44 45566778899999888765 88888888763
No 64
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.50 E-value=6.8e-14 Score=159.95 Aligned_cols=244 Identities=23% Similarity=0.277 Sum_probs=151.5
Q ss_pred CcccccccCCCCCCccEEEEcccc-----cCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCCCC
Q 047202 1 MNFCYLQGDKNLTGVTHVIVDEVH-----ERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGDCP 74 (735)
Q Consensus 1 ~~~~~l~~d~~L~~~s~vIiDEvH-----ER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~~p 74 (735)
+++.+|.....+..+..|||||.| +|+-..+.+|.-+ +...+. ..+++|.||||+ |.+.+++||. +-
T Consensus 328 slin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~--~y~~~~----~~~~iIGMSATi~N~~lL~~~L~-A~ 400 (1008)
T KOG0950|consen 328 SLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKI--LYENLE----TSVQIIGMSATIPNNSLLQDWLD-AF 400 (1008)
T ss_pred hHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHH--HHhccc----cceeEeeeecccCChHHHHHHhh-hh
Confidence 356778888889999999999999 5777666665533 333222 348999999999 8899999987 22
Q ss_pred eEeeCCceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCC
Q 047202 75 VITAEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDY 154 (735)
Q Consensus 75 vi~i~gr~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (735)
+-.-.-|.-|.+++-.. + +.-...+ ++..+. .+...
T Consensus 401 ~y~t~fRPv~L~E~ik~------G--------------------~~i~~~~-r~~~lr-----------~ia~l------ 436 (1008)
T KOG0950|consen 401 VYTTRFRPVPLKEYIKP------G--------------------SLIYESS-RNKVLR-----------EIANL------ 436 (1008)
T ss_pred heecccCcccchhccCC------C--------------------cccccch-hhHHHH-----------Hhhhh------
Confidence 22222232232222110 0 0000000 000000 00000
Q ss_pred CCccHHHHHHhhhccccccchHHHHHHHHHHHccCCCC-cEEEEcCCHHHHHHHHHHHHhhh---------c--------
Q 047202 155 GSYSEQTRQNLKRLNEDVIDYDLLEDLVCHVDETCGEG-AILVFLPGVAEIHILLDRLAASY---------R-------- 216 (735)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g-~iLVFlpg~~eI~~l~~~L~~~~---------~-------- 216 (735)
|+ .+++..++ |-++.+ +.++.+.| .+|||+|.+..++.++..+.... .
T Consensus 437 --~~----~~~g~~dp-----D~~v~L---~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~ 502 (1008)
T KOG0950|consen 437 --YS----SNLGDEDP-----DHLVGL---CTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSI 502 (1008)
T ss_pred --hh----hhcccCCC-----cceeee---hhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHH
Confidence 00 00111111 111122 22233445 59999999988877654432110 0
Q ss_pred ---cC-----------CCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceecc
Q 047202 217 ---FG-----------GPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYN 282 (735)
Q Consensus 217 ---~~-----------~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd 282 (735)
.. ..-..-+..+|++++.++|+-|-..++.|..+|++||+....|++.|..+|.|-+-
T Consensus 503 s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP-------- 574 (1008)
T KOG0950|consen 503 SNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAP-------- 574 (1008)
T ss_pred HhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCC--------
Confidence 00 01123478899999999999999999999999999999999999999999999532
Q ss_pred CCCCcccceeEeehHhhHHHhcCcCCCCCC---cEEEEceehhh
Q 047202 283 SQKKLSSMVEDWISQANARQRRGRAGRVKP---GICYSLYTRHR 323 (735)
Q Consensus 283 ~~~~~~~l~~~~iSkasa~QR~GRAGR~~~---G~c~rL~t~~~ 323 (735)
.......++.+|+||.|||||++- |.|+-.+.+..
T Consensus 575 ------~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 575 ------YVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred ------ccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccc
Confidence 223456778999999999999963 88999988765
No 65
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.50 E-value=1.2e-13 Score=150.88 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=98.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
-+-.+|||+-..+...+|.+.|... .+..|-..||..++.++..+++.|+.|+..|++||++.++||++-||..
T Consensus 386 ~~PP~lIfVQs~eRak~L~~~L~~~------~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~ 459 (593)
T KOG0344|consen 386 FKPPVLIFVQSKERAKQLFEELEIY------DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNL 459 (593)
T ss_pred CCCCeEEEEecHHHHHHHHHHhhhc------cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcce
Confidence 4568999999999999999888521 2567999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhHh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRYE 325 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~~ 325 (735)
||+ || .+-|.-++.+|.||.||.++ |..|.+||+.+..
T Consensus 460 VIn--------yD----------~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~ 498 (593)
T KOG0344|consen 460 VIN--------YD----------FPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMP 498 (593)
T ss_pred EEe--------cC----------CCchhHHHHHHhhccCCCCCCcceEEEeccccch
Confidence 999 77 34567788999999999887 9999999985543
No 66
>PRK13766 Hef nuclease; Provisional
Probab=99.49 E-value=5.2e-13 Score=160.95 Aligned_cols=126 Identities=20% Similarity=0.246 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCC--------CCHHHHHHhcCCCCC
Q 047202 175 YDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSS--------VASVDQKKVFLRPPE 246 (735)
Q Consensus 175 ~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~--------l~~~eq~~vf~~~~~ 246 (735)
.+.+.+++..+....+.+.+|||+.....++.+.+.|... ++....+||. +++.+|.++++.|..
T Consensus 349 ~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~-------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~ 421 (773)
T PRK13766 349 LEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE-------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA 421 (773)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC-------CCceEEEEccccccccCCCCHHHHHHHHHHHHc
Confidence 4556666766665567889999999999999999998543 3446667765 999999999999999
Q ss_pred CccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHh
Q 047202 247 KIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYE 325 (735)
Q Consensus 247 g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~ 325 (735)
|..+|++||++++.|++||++.+||. ||+. .|...+.||+||+||.++|.+|.|+++..-+
T Consensus 422 g~~~vLvaT~~~~eGldi~~~~~VI~--------yd~~----------~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~e 482 (773)
T PRK13766 422 GEFNVLVSTSVAEEGLDIPSVDLVIF--------YEPV----------PSEIRSIQRKGRTGRQEEGRVVVLIAKGTRD 482 (773)
T ss_pred CCCCEEEECChhhcCCCcccCCEEEE--------eCCC----------CCHHHHHHHhcccCcCCCCEEEEEEeCCChH
Confidence 99999999999999999999999997 7763 2556788999999999999999999876543
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.49 E-value=3e-13 Score=154.49 Aligned_cols=111 Identities=17% Similarity=0.137 Sum_probs=91.0
Q ss_pred HHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEec-
Q 047202 177 LLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIAT- 255 (735)
Q Consensus 177 li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaT- 255 (735)
++..++..+.+ .++.+|||+...+.++.+.+.|... +..+..+||+++.++|.++.+.+..|...|+|||
T Consensus 332 ~I~~~~~~~~~--~~~~~lV~~~~~~h~~~L~~~L~~~-------g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~ 402 (501)
T PHA02558 332 WIANLALKLAK--KGENTFVMFKYVEHGKPLYEMLKKV-------YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASY 402 (501)
T ss_pred HHHHHHHHHHh--cCCCEEEEEEEHHHHHHHHHHHHHc-------CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEc
Confidence 44455544432 4568999999999999999999764 3569999999999999999988888998999998
Q ss_pred cccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcE
Q 047202 256 NIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGI 314 (735)
Q Consensus 256 nIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~ 314 (735)
+++.+|++||++..||- +.|. -|+..+.||+||+||.++|.
T Consensus 403 ~~l~eG~Dip~ld~vIl--------~~p~----------~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 403 GVFSTGISIKNLHHVIF--------AHPS----------KSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred ceeccccccccccEEEE--------ecCC----------cchhhhhhhhhccccCCCCC
Confidence 89999999999999995 2322 25677889999999998864
No 68
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.49 E-value=5.4e-14 Score=151.50 Aligned_cols=123 Identities=25% Similarity=0.293 Sum_probs=99.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
-||..|||+++.+.|..+.-.|... ++.-+|||++|.+.+|.+-+++|....--|+|||+||.+|++||+|.+
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L-------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~H 534 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNL-------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQH 534 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhc-------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcce
Confidence 5899999999999999988877643 355789999999999999999999988899999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhHhhhcCCCCCCcccccchHHHHHHH
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRYEKLMRPYQVPEMQRMPLVELCLQI 348 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~~~~~~~~~~PEi~r~~L~~l~L~~ 348 (735)
||. |....... .|.||.||+.|... |+..-|+..... .++-.+|-.+
T Consensus 535 VIH--------YqVPrtse----------iYVHRSGRTARA~~~Gvsvml~~P~e~--------------~~~~KL~ktL 582 (731)
T KOG0347|consen 535 VIH--------YQVPRTSE----------IYVHRSGRTARANSEGVSVMLCGPQEV--------------GPLKKLCKTL 582 (731)
T ss_pred EEE--------eecCCccc----------eeEecccccccccCCCeEEEEeChHHh--------------HHHHHHHHHH
Confidence 998 54333333 34599999999765 999888775542 2455666666
Q ss_pred HHc
Q 047202 349 KLL 351 (735)
Q Consensus 349 k~l 351 (735)
+..
T Consensus 583 ~k~ 585 (731)
T KOG0347|consen 583 KKK 585 (731)
T ss_pred hhc
Confidence 653
No 69
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.48 E-value=2.9e-13 Score=152.06 Aligned_cols=112 Identities=22% Similarity=0.203 Sum_probs=100.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
...++-+||+.++.+++.++++|... ++.+.++|++|+.++|..+.+.|-++..+|||||+.-..||+.|||+
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~-------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVR 300 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKN-------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVR 300 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHC-------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCce
Confidence 45677899999999999999999865 57899999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHh
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYE 325 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~ 325 (735)
|||. ||. |-|-.+|-|=.|||||-+ |-.|+-||+..+..
T Consensus 301 fViH--------~~l----------P~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 301 FVIH--------YDL----------PGSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred EEEE--------ecC----------CCCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 9998 553 335667889999999976 59999999987754
No 70
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.46 E-value=3.2e-13 Score=151.37 Aligned_cols=198 Identities=22% Similarity=0.301 Sum_probs=137.4
Q ss_pred ccCCCCCCccEEEEcccccCCccHHHHHHHHHH-HHHhhccCCCC-CcEEEEecCCCChHHHH-hhhCCCCeEee----C
Q 047202 7 QGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKD-LLEKQSAHDTP-KLKVILMSATVDSNLFS-RYFGDCPVITA----E 79 (735)
Q Consensus 7 ~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~-ll~~r~~~~~~-~lklIlmSAT~~~~~f~-~yF~~~pvi~i----~ 79 (735)
|.+-.+++...|||||-|.-+ +-.+ .|... .+ .+.+++||||.-+..++ ..|++-.+-.| +
T Consensus 377 Qd~V~F~~LgLVIiDEQHRFG--------V~QR~~L~~K----G~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~ 444 (677)
T COG1200 377 QDKVEFHNLGLVIIDEQHRFG--------VHQRLALREK----GEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPP 444 (677)
T ss_pred hcceeecceeEEEEecccccc--------HHHHHHHHHh----CCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCC
Confidence 455578999999999999743 3322 22211 13 46799999999888886 77887554433 3
Q ss_pred CceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccH
Q 047202 80 GRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSE 159 (735)
Q Consensus 80 gr~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (735)
||+ ||+++.+.+- .
T Consensus 445 GRk-pI~T~~i~~~--~--------------------------------------------------------------- 458 (677)
T COG1200 445 GRK-PITTVVIPHE--R--------------------------------------------------------------- 458 (677)
T ss_pred CCC-ceEEEEeccc--c---------------------------------------------------------------
Confidence 554 8888766420 0
Q ss_pred HHHHHhhhccccccchHHHHHHHHHHHccC-CCCcEEEEcCCHHHH--------HHHHHHHHhhhccCCCCCcEEEEecC
Q 047202 160 QTRQNLKRLNEDVIDYDLLEDLVCHVDETC-GEGAILVFLPGVAEI--------HILLDRLAASYRFGGPSSDWLLALHS 230 (735)
Q Consensus 160 ~~~~~~~~~~~~~i~~~li~~ll~~i~~~~-~~g~iLVFlpg~~eI--------~~l~~~L~~~~~~~~~~~~~i~~LHs 230 (735)
...++..|.+.. .+..+-|-+|=.+|- ..+++.|.... ++++|-.+||
T Consensus 459 ------------------~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~-----~~~~vgL~HG 515 (677)
T COG1200 459 ------------------RPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFL-----PELKVGLVHG 515 (677)
T ss_pred ------------------HHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHc-----ccceeEEEec
Confidence 001111221111 233555556655444 34455565322 3567999999
Q ss_pred CCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCC
Q 047202 231 SVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRV 310 (735)
Q Consensus 231 ~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~ 310 (735)
.|+++|+..|++.|..|...|+|||.|.|.||++||-++.|= +|+.+ ..-|+..|=+||.||-
T Consensus 516 rm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AER---------FGLaQLHQLRGRVGRG 578 (677)
T COG1200 516 RMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI--------ENAER---------FGLAQLHQLRGRVGRG 578 (677)
T ss_pred CCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------echhh---------hhHHHHHHhccccCCC
Confidence 999999999999999999999999999999999999987763 55433 3467788999999996
Q ss_pred C-CcEEEEceehh
Q 047202 311 K-PGICYSLYTRH 322 (735)
Q Consensus 311 ~-~G~c~rL~t~~ 322 (735)
. +++|+-+|...
T Consensus 579 ~~qSyC~Ll~~~~ 591 (677)
T COG1200 579 DLQSYCVLLYKPP 591 (677)
T ss_pred CcceEEEEEeCCC
Confidence 5 59999998754
No 71
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.40 E-value=2.9e-12 Score=137.94 Aligned_cols=135 Identities=19% Similarity=0.296 Sum_probs=103.7
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhcc-----------CCC----CCcEEEEecCCCCHHHHHHhcC
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRF-----------GGP----SSDWLLALHSSVASVDQKKVFL 242 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~-----------~~~----~~~~i~~LHs~l~~~eq~~vf~ 242 (735)
+.+++...++.+..-..+||+...+-++-=++.+...... .+. .+.+++-|||+|++++|..+|+
T Consensus 412 Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~ 491 (708)
T KOG0348|consen 412 LAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQ 491 (708)
T ss_pred HHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHH
Confidence 4455666666556668899999999988766655432211 010 1357999999999999999999
Q ss_pred CCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-c--EEEEce
Q 047202 243 RPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-G--ICYSLY 319 (735)
Q Consensus 243 ~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G--~c~rL~ 319 (735)
.|....+-|++||+||.+|+++|+|+.||. ||+ |-|-+.+.+|.||+.|.|. | .-|-+=
T Consensus 492 ~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~----------P~s~adylHRvGRTARaG~kG~alLfL~P 553 (708)
T KOG0348|consen 492 EFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDP----------PFSTADYLHRVGRTARAGEKGEALLFLLP 553 (708)
T ss_pred hhccccceEEEehhhhhccCCCCCcCeEEE--------eCC----------CCCHHHHHHHhhhhhhccCCCceEEEecc
Confidence 999999999999999999999999999998 886 4578999999999777654 5 455666
Q ss_pred ehhhHhhhcCC
Q 047202 320 TRHRYEKLMRP 330 (735)
Q Consensus 320 t~~~~~~~~~~ 330 (735)
++.+|-+.+..
T Consensus 554 ~Eaey~~~l~~ 564 (708)
T KOG0348|consen 554 SEAEYVNYLKK 564 (708)
T ss_pred cHHHHHHHHHh
Confidence 67777665443
No 72
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.40 E-value=4.5e-13 Score=138.81 Aligned_cols=108 Identities=20% Similarity=0.319 Sum_probs=93.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
...++|||.-...+++.+.+.|.-. +..+..+||+-.+++|..+.+.|+.|+..|+|||++|..|+++|||.+
T Consensus 420 T~PpVLIFaEkK~DVD~IhEYLLlK-------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqH 492 (610)
T KOG0341|consen 420 TSPPVLIFAEKKADVDDIHEYLLLK-------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQH 492 (610)
T ss_pred CCCceEEEeccccChHHHHHHHHHc-------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchh
Confidence 3457999999999999999987643 577999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRH 322 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~ 322 (735)
||| ||-.. --.+|.+|.||+||.+. |+.-.+..+.
T Consensus 493 VIN--------yDMP~----------eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 493 VIN--------YDMPE----------EIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred hcc--------CCChH----------HHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 999 66332 34678899999999987 8887766654
No 73
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=2.1e-12 Score=134.87 Aligned_cols=120 Identities=21% Similarity=0.343 Sum_probs=103.6
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE 259 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE 259 (735)
..++.+++ .-...+||++|++.+..+...|... ++.+...|+.+.+.+|..+...|..|.-+|++.|+.+.
T Consensus 254 ~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~-------~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~a 324 (397)
T KOG0327|consen 254 DTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH-------GFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLA 324 (397)
T ss_pred cHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC-------CceEEEeecccchhhhhHHHHHhhcCCceEEeeccccc
Confidence 44555555 5667899999999999999999544 57899999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhHhh
Q 047202 260 TSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRYEK 326 (735)
Q Consensus 260 tsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~~~ 326 (735)
+|++|-++..||+ ||... -+.+|.+|+||+||.+. |....+.++++-..
T Consensus 325 rgidv~~~slvin--------ydlP~----------~~~~yihR~gr~gr~grkg~~in~v~~~d~~~ 374 (397)
T KOG0327|consen 325 RGIDVQQVSLVVN--------YDLPA----------RKENYIHRIGRAGRFGRKGVAINFVTEEDVRD 374 (397)
T ss_pred cccchhhcceeee--------ecccc----------chhhhhhhcccccccCCCceeeeeehHhhHHH
Confidence 9999999999998 77543 47788999999999864 99999999876544
No 74
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.38 E-value=3.5e-11 Score=138.70 Aligned_cols=336 Identities=23% Similarity=0.254 Sum_probs=208.6
Q ss_pred cccccCC-CCCCccEEEEcccc----cCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCCCC---
Q 047202 4 CYLQGDK-NLTGVTHVIVDEVH----ERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGDCP--- 74 (735)
Q Consensus 4 ~~l~~d~-~L~~~s~vIiDEvH----ER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~~p--- 74 (735)
|+-.+|. ..+.+..||||||| +|+.-.+.+.+-..++...- ...+|+|..|||+ |-+..+.|++-.|
T Consensus 227 Rk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vess----qs~IRivgLSATlPN~eDvA~fL~vn~~~g 302 (1230)
T KOG0952|consen 227 RKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESS----QSMIRIVGLSATLPNYEDVARFLRVNPYAG 302 (1230)
T ss_pred eeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhh----hhheEEEEeeccCCCHHHHHHHhcCCCccc
Confidence 4444444 45889999999999 79998888888777666432 2579999999999 8899999987432
Q ss_pred eEeeCCc--eecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCC
Q 047202 75 VITAEGR--THPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPS 152 (735)
Q Consensus 75 vi~i~gr--~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (735)
+....++ .-|.+..++.- +++++
T Consensus 303 lfsFd~~yRPvpL~~~~iG~-------------------------------k~~~~------------------------ 327 (1230)
T KOG0952|consen 303 LFSFDQRYRPVPLTQGFIGI-------------------------------KGKKN------------------------ 327 (1230)
T ss_pred eeeecccccccceeeeEEee-------------------------------ecccc------------------------
Confidence 2333333 22333333210 00000
Q ss_pred CCCCccHHHHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCC-------CC--C-
Q 047202 153 DYGSYSEQTRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGG-------PS--S- 222 (735)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~-------~~--~- 222 (735)
.+. .+.+|.-.-..++..+. ++..+|||++.+.+.-..++.|.+.....+ .+ +
T Consensus 328 ------~~~--------~~~~d~~~~~kv~e~~~---~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~ 390 (1230)
T KOG0952|consen 328 ------RQQ--------KKNIDEVCYDKVVEFLQ---EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQ 390 (1230)
T ss_pred ------hhh--------hhhHHHHHHHHHHHHHH---cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHH
Confidence 000 01112112223333332 467899999999988777777754321111 11 1
Q ss_pred ------cEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeeh
Q 047202 223 ------DWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWIS 296 (735)
Q Consensus 223 ------~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iS 296 (735)
.-+-..|+||..++|+.+..-|..|-.+|++||....-|+++|+=-++|= | ...||+..|.- +-.+
T Consensus 391 l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK-G---T~~ydsskg~f----~dlg 462 (1230)
T KOG0952|consen 391 LKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK-G---TQVYDSSKGSF----VDLG 462 (1230)
T ss_pred HHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec-C---CcccccccCce----eeeh
Confidence 23667899999999999999999999999999999999999999777762 2 45688776532 3345
Q ss_pred HhhHHHhcCcCCCCC---CcEEEEceehh---hHhhhcCCCCCCcccccchHHHHHH-----HHH---c-CCCchh---H
Q 047202 297 QANARQRRGRAGRVK---PGICYSLYTRH---RYEKLMRPYQVPEMQRMPLVELCLQ-----IKL---L-SLGRIK---I 358 (735)
Q Consensus 297 kasa~QR~GRAGR~~---~G~c~rL~t~~---~~~~~~~~~~~PEi~r~~L~~l~L~-----~k~---l-~~~~~~---~ 358 (735)
--...|--|||||.+ .|..+-+-|++ .|.+++. .+.| +|+-.+. +-+ + .+.++. +
T Consensus 463 ilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~-~~~p------iES~~~~~L~dnLnAEi~LgTVt~VdeAVe 535 (1230)
T KOG0952|consen 463 ILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLT-GQNP------IESQLLPCLIDNLNAEISLGTVTNVDEAVE 535 (1230)
T ss_pred HHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHc-CCCh------hHHHHHHHHHHhhhhheeeceeecHHHHHH
Confidence 567789999999975 47776666653 4555432 2222 2221111 100 1 111211 1
Q ss_pred hhh-------------------hcCC-CChH-----HHHHHHHHHHHHcCCC--CCC---CCCCHhhhhhccCCCchHHH
Q 047202 359 FLS-------------------KALE-PPKE-----EAITTAISVLYEVGAI--EGD---EELTPLGHHLAKLPVDVLIG 408 (735)
Q Consensus 359 fl~-------------------~~l~-pP~~-----~~i~~a~~~L~~lgal--~~~---~~lT~lG~~l~~lp~~p~~~ 408 (735)
+|. ..+. -|.. +-+..|+..|.....+ |.. -.-|++||.++.+.+.-..-
T Consensus 536 WL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETm 615 (1230)
T KOG0952|consen 536 WLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETM 615 (1230)
T ss_pred HhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHH
Confidence 111 1111 1211 2344555566555333 322 26899999999999999999
Q ss_pred HHHHhhcc-cCChhHHHHHHhhh
Q 047202 409 KMMLFGGI-FGCLSPILSISAFL 430 (735)
Q Consensus 409 k~l~~~~~-~~c~~~~l~iaa~l 430 (735)
+.++.... |--.+++|.|++.-
T Consensus 616 e~~nn~~k~~~se~~iL~lis~a 638 (1230)
T KOG0952|consen 616 ETFNNLPKSFYSEDDILALISMA 638 (1230)
T ss_pred HHHHhcccccCCHHHHHHHHHhh
Confidence 99998887 66778888777654
No 75
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.37 E-value=9.6e-12 Score=127.84 Aligned_cols=108 Identities=19% Similarity=0.352 Sum_probs=83.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
.+-++|||+|..+-.+++.+.|+.... ...+...||. ...|.+..+.+++|+.+++++|.|.|+|+|+|+|.+
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~-----~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV 376 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLP-----KETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDV 376 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCC-----ccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceE
Confidence 355899999999999999999976542 3457888987 345666667789999999999999999999999987
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCC--CC-c-EEEEcee
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRV--KP-G-ICYSLYT 320 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~--~~-G-~c~rL~t 320 (735)
+| .++... --++++..|-+||+||. +| | +||-=|.
T Consensus 377 ~V---------lgaeh~-------vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 377 FV---------LGAEHR-------VFTESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred EE---------ecCCcc-------cccHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 66 222222 24789999999999995 44 5 4544343
No 76
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.33 E-value=4.9e-12 Score=138.55 Aligned_cols=209 Identities=18% Similarity=0.227 Sum_probs=151.7
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCCh---HHHHhhhCCCCeEeeCCc---eec
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDS---NLFSRYFGDCPVITAEGR---THP 84 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~---~~f~~yF~~~pvi~i~gr---~~p 84 (735)
+.+.+..+|+|||+. -++|..+-.-+..++..- ...-+++.+|||-+- +.+++|..++..|....+ .|.
T Consensus 164 n~s~vrlfVLDEADk-L~~t~sfq~~In~ii~sl----P~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~G 238 (980)
T KOG4284|consen 164 NMSHVRLFVLDEADK-LMDTESFQDDINIIINSL----PQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFG 238 (980)
T ss_pred CccceeEEEeccHHh-hhchhhHHHHHHHHHHhc----chhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeec
Confidence 467889999999973 122222222233333322 134689999999954 468999998877776544 355
Q ss_pred ceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHHHHH
Q 047202 85 VTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQTRQN 164 (735)
Q Consensus 85 V~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (735)
++.||..-. +|+.
T Consensus 239 ikQyv~~~~--------------------------------------------------------------s~nn----- 251 (980)
T KOG4284|consen 239 IKQYVVAKC--------------------------------------------------------------SPNN----- 251 (980)
T ss_pred hhheeeecc--------------------------------------------------------------CCcc-----
Confidence 555553210 0000
Q ss_pred hhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCC
Q 047202 165 LKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRP 244 (735)
Q Consensus 165 ~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~ 244 (735)
..-...+..+.+.++.+..+--..|||+.....++.+...|... ++-+..+.|.|.+.+|..+|+..
T Consensus 252 ------sveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss-------G~d~~~ISgaM~Q~~Rl~a~~~l 318 (980)
T KOG4284|consen 252 ------SVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS-------GLDVTFISGAMSQKDRLLAVDQL 318 (980)
T ss_pred ------hHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc-------CCCeEEeccccchhHHHHHHHHh
Confidence 01123355667777877777778999999999999999988765 67789999999999999999998
Q ss_pred CCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehh
Q 047202 245 PEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRH 322 (735)
Q Consensus 245 ~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~ 322 (735)
+.-..||+|||+.-.+||+-|+|..||| .|+..+ -..|.||.|||||.|. |....++-+.
T Consensus 319 r~f~~rILVsTDLtaRGIDa~~vNLVVN--------iD~p~d----------~eTY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 319 RAFRVRILVSTDLTARGIDADNVNLVVN--------IDAPAD----------EETYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred hhceEEEEEecchhhccCCccccceEEe--------cCCCcc----------hHHHHHHhhhcccccccceeEEEeccc
Confidence 8888899999999999999999999998 555443 3356799999999987 9888776544
No 77
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=9.6e-12 Score=141.37 Aligned_cols=87 Identities=18% Similarity=0.194 Sum_probs=63.7
Q ss_pred CcEEEEecCCCCHHHH--HHhcCCCCCCccEEEEeccccccCCCCCCeEEEE--eCCcccceeccCCCCcccceeEeehH
Q 047202 222 SDWLLALHSSVASVDQ--KKVFLRPPEKIRKVIIATNIAETSITIDDVVYVF--DCGRHKENRYNSQKKLSSMVEDWISQ 297 (735)
Q Consensus 222 ~~~i~~LHs~l~~~eq--~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VI--DsG~~k~~~yd~~~~~~~l~~~~iSk 297 (735)
+..|..+|+.++.... +++++.+.+|+..|+|+|.+++.|+++|+|+.|+ |. |...+...+...--.-
T Consensus 284 ~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~a--------D~~l~~pd~ra~E~~~ 355 (505)
T TIGR00595 284 GARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDA--------DSGLHSPDFRAAERGF 355 (505)
T ss_pred CCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcC--------cccccCcccchHHHHH
Confidence 4679999999987654 7789999999999999999999999999999874 53 3211111111011123
Q ss_pred hhHHHhcCcCCCCC-CcEEE
Q 047202 298 ANARQRRGRAGRVK-PGICY 316 (735)
Q Consensus 298 asa~QR~GRAGR~~-~G~c~ 316 (735)
+.+.|++|||||.+ +|.++
T Consensus 356 ~ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 356 QLLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred HHHHHHHhccCCCCCCCEEE
Confidence 56789999999954 59887
No 78
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.31 E-value=3.9e-12 Score=147.49 Aligned_cols=120 Identities=18% Similarity=0.329 Sum_probs=102.4
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
+..++..+......|+++||+..++.+..+.+.|... ++....|||+.++.+|....+.|+.|..+++|||.+
T Consensus 600 f~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a-------g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv 672 (997)
T KOG0334|consen 600 FLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA-------GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV 672 (997)
T ss_pred HHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc-------CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhh
Confidence 3455555555556999999999999999999999754 455666999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehh
Q 047202 258 AETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRH 322 (735)
Q Consensus 258 AEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~ 322 (735)
+.+|+++.++-.||+ ||..+.+. .+.+|.||+||+++ |.||-+.+.+
T Consensus 673 varGLdv~~l~Lvvn--------yd~pnh~e----------dyvhR~gRTgragrkg~AvtFi~p~ 720 (997)
T KOG0334|consen 673 VARGLDVKELILVVN--------YDFPNHYE----------DYVHRVGRTGRAGRKGAAVTFITPD 720 (997)
T ss_pred hhcccccccceEEEE--------cccchhHH----------HHHHHhcccccCCccceeEEEeChH
Confidence 999999999999998 77666544 37799999999988 9988887764
No 79
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.29 E-value=1.7e-11 Score=146.21 Aligned_cols=116 Identities=22% Similarity=0.209 Sum_probs=89.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCC-CCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGG-PSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~-~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
..-..|||.-++..++.+.........-.+ .-...|...||+++.+++.++...+..|..++++|||..|-||+|-++.
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ld 384 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLD 384 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhh
Confidence 345789999999999888643332211111 1123588999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehh
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRH 322 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~ 322 (735)
.||-.|++- +|..++.||+|||||.. .+..+-.+..+
T Consensus 385 avi~~g~P~-----------------~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 385 AVIAYGYPG-----------------VSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred hHhhcCCCC-----------------chHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 999887432 26788999999999987 45444444433
No 80
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=2.5e-11 Score=139.20 Aligned_cols=105 Identities=25% Similarity=0.206 Sum_probs=84.6
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCC---Ce
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITID---DV 267 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIp---dV 267 (735)
+.++|||+++.++.+.+.+.|... ++.+..|||.....++..+.....+ .+|+||||+|.+|++|+ +|
T Consensus 473 ~~pvLIft~t~~~se~L~~~L~~~-------gi~~~~Lhg~~~~rE~~ii~~ag~~--g~VlVATdmAgRGtDI~l~~~V 543 (656)
T PRK12898 473 GRPVLVGTRSVAASERLSALLREA-------GLPHQVLNAKQDAEEAAIVARAGQR--GRITVATNMAGRGTDIKLEPGV 543 (656)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHC-------CCCEEEeeCCcHHHHHHHHHHcCCC--CcEEEEccchhcccCcCCccch
Confidence 457999999999999999999764 5778999999766665555444444 46999999999999999 78
Q ss_pred E-----EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehh
Q 047202 268 V-----YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRH 322 (735)
Q Consensus 268 ~-----~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~ 322 (735)
. +||++.++ -|.-.+.||+||+||.| ||.|+-+++.+
T Consensus 544 ~~~GGLhVI~~d~P------------------~s~r~y~hr~GRTGRqG~~G~s~~~is~e 586 (656)
T PRK12898 544 AARGGLHVILTERH------------------DSARIDRQLAGRCGRQGDPGSYEAILSLE 586 (656)
T ss_pred hhcCCCEEEEcCCC------------------CCHHHHHHhcccccCCCCCeEEEEEechh
Confidence 7 99985433 34556779999999988 59999998864
No 81
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.27 E-value=5.7e-11 Score=140.48 Aligned_cols=200 Identities=24% Similarity=0.291 Sum_probs=148.9
Q ss_pred cccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhC---CCCeEeeC-Cc
Q 047202 6 LQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFG---DCPVITAE-GR 81 (735)
Q Consensus 6 l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~---~~pvi~i~-gr 81 (735)
|+.|-.+++...+||||=|.-++.- |+-++..+ .+.-++=||||.-+..+.==.. +-.+|..| -.
T Consensus 708 L~kdv~FkdLGLlIIDEEqRFGVk~-------KEkLK~Lr----~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~ 776 (1139)
T COG1197 708 LSKDVKFKDLGLLIIDEEQRFGVKH-------KEKLKELR----ANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED 776 (1139)
T ss_pred hCCCcEEecCCeEEEechhhcCccH-------HHHHHHHh----ccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC
Confidence 5667789999999999999744432 33333222 5688999999997776642222 23455554 45
Q ss_pred eecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHH
Q 047202 82 THPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQT 161 (735)
Q Consensus 82 ~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (735)
.+||++|..+-
T Consensus 777 R~pV~T~V~~~--------------------------------------------------------------------- 787 (1139)
T COG1197 777 RLPVKTFVSEY--------------------------------------------------------------------- 787 (1139)
T ss_pred CcceEEEEecC---------------------------------------------------------------------
Confidence 68999887642
Q ss_pred HHHhhhccccccchHHH-HHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHh
Q 047202 162 RQNLKRLNEDVIDYDLL-EDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKV 240 (735)
Q Consensus 162 ~~~~~~~~~~~i~~~li-~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~v 240 (735)
|..++ ++++..+ ..+|.+-.-.|-.++|+.+.+.|+... +...|...||+|+..+-.++
T Consensus 788 ------------d~~~ireAI~REl---~RgGQvfYv~NrV~~Ie~~~~~L~~LV-----PEarI~vaHGQM~e~eLE~v 847 (1139)
T COG1197 788 ------------DDLLIREAILREL---LRGGQVFYVHNRVESIEKKAERLRELV-----PEARIAVAHGQMRERELEEV 847 (1139)
T ss_pred ------------ChHHHHHHHHHHH---hcCCEEEEEecchhhHHHHHHHHHHhC-----CceEEEEeecCCCHHHHHHH
Confidence 00111 2333333 358898888999999999999998774 35679999999999999999
Q ss_pred cCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEce
Q 047202 241 FLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLY 319 (735)
Q Consensus 241 f~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~ 319 (735)
+..|-.|.-.|+|||.|.||||+||++.-.|= .+. ....-|+.-|-+||.||... |+||-||
T Consensus 848 M~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~A---------D~fGLsQLyQLRGRVGRS~~~AYAYfl~ 910 (1139)
T COG1197 848 MLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ERA---------DKFGLAQLYQLRGRVGRSNKQAYAYFLY 910 (1139)
T ss_pred HHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------ecc---------ccccHHHHHHhccccCCccceEEEEEee
Confidence 99999999999999999999999999876661 111 12235677899999999765 9999999
Q ss_pred ehh
Q 047202 320 TRH 322 (735)
Q Consensus 320 t~~ 322 (735)
...
T Consensus 911 p~~ 913 (1139)
T COG1197 911 PPQ 913 (1139)
T ss_pred cCc
Confidence 864
No 82
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.27 E-value=7e-12 Score=134.27 Aligned_cols=114 Identities=18% Similarity=0.271 Sum_probs=96.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
..-..+|+|..+.+...+++..|.-... ..++.+-.+-|+|....|.+....|..|...|+|||++..+||+|.||+
T Consensus 427 ~k~~r~lcf~~S~~sa~Rl~~~L~v~~~---~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~ 503 (620)
T KOG0350|consen 427 NKLNRTLCFVNSVSSANRLAHVLKVEFC---SDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVD 503 (620)
T ss_pred hhcceEEEEecchHHHHHHHHHHHHHhc---cccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccc
Confidence 3456899999999999999988873221 1234566688999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhh
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHR 323 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~ 323 (735)
.||+ ||+.. |--.|.||+||+||.|. |.||.|.+++.
T Consensus 504 ~VIN--------Yd~P~----------~~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 504 NVIN--------YDPPA----------SDKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred eEee--------cCCCc----------hhhHHHHhhcccccccCCceEEEeecccc
Confidence 9999 98754 45567899999999876 99999998754
No 83
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.27 E-value=6.1e-11 Score=138.24 Aligned_cols=216 Identities=19% Similarity=0.183 Sum_probs=142.8
Q ss_pred HHccCCCCcEEEEcCCHHHHHHHHHHHHhhhc-------c--C---------------------CCCCcEEEEecCCCCH
Q 047202 185 VDETCGEGAILVFLPGVAEIHILLDRLAASYR-------F--G---------------------GPSSDWLLALHSSVAS 234 (735)
Q Consensus 185 i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~-------~--~---------------------~~~~~~i~~LHs~l~~ 234 (735)
+.+....+.||||+.++.|..+.++.+++... | . +--++.+..+|+||..
T Consensus 540 Vm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R 619 (1674)
T KOG0951|consen 540 VLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNR 619 (1674)
T ss_pred HHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCc
Confidence 33344568999999999998887777662110 0 0 0012457889999999
Q ss_pred HHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC---
Q 047202 235 VDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK--- 311 (735)
Q Consensus 235 ~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~--- 311 (735)
.+|..+.+-+..|.++|.+||-..+.||+.|.=+++|- -...|||..+. ...+|.-...||.|||||.+
T Consensus 620 ~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqvy~pekg~----w~elsp~dv~qmlgragrp~~D~ 691 (1674)
T KOG0951|consen 620 KDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQVYDPEKGR----WTELSPLDVMQMLGRAGRPQYDT 691 (1674)
T ss_pred chHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----CccccCcccCc----cccCCHHHHHHHHhhcCCCccCc
Confidence 99999999999999999999999999999999888773 24579998874 35678899999999999985
Q ss_pred --CcEEEEceehhhHh-hhcCCCCCCccccc-chHHHHHHHHHcCCCchh---Hhhh------hcCCCCh----------
Q 047202 312 --PGICYSLYTRHRYE-KLMRPYQVPEMQRM-PLVELCLQIKLLSLGRIK---IFLS------KALEPPK---------- 368 (735)
Q Consensus 312 --~G~c~rL~t~~~~~-~~~~~~~~PEi~r~-~L~~l~L~~k~l~~~~~~---~fl~------~~l~pP~---------- 368 (735)
.|+...=+++-.|. .+|.+.-+-|-+++ -|.+-+-.=+.+|+.++. ++|. +.+..|.
T Consensus 692 ~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d 771 (1674)
T KOG0951|consen 692 CGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASD 771 (1674)
T ss_pred CCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccch
Confidence 36665555554443 23332111122222 222211111233433222 2220 1112221
Q ss_pred -------HHHHHHHHHHHHHcCCCCCCC-----CCCHhhhhhccCCCchHHH
Q 047202 369 -------EEAITTAISVLYEVGAIEGDE-----ELTPLGHHLAKLPVDVLIG 408 (735)
Q Consensus 369 -------~~~i~~a~~~L~~lgal~~~~-----~lT~lG~~l~~lp~~p~~~ 408 (735)
.+-+++|.-.|...|.|-.+. +.|.+|+..+...+.-.-.
T Consensus 772 ~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~ 823 (1674)
T KOG0951|consen 772 RLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSM 823 (1674)
T ss_pred HHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchH
Confidence 255788999999999986542 7899999999998865443
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.26 E-value=6.6e-11 Score=139.34 Aligned_cols=100 Identities=18% Similarity=0.246 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhccCCCCCcEEEEecCCCCH--HHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEE--eCCccc-c
Q 047202 204 IHILLDRLAASYRFGGPSSDWLLALHSSVAS--VDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVF--DCGRHK-E 278 (735)
Q Consensus 204 I~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~--~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VI--DsG~~k-~ 278 (735)
++.+.+.|.... ++..|..+|+.++. ++++++++.+..|+..|+|+|++++.|+++|+|+.|+ |....- .
T Consensus 439 ~e~~~e~l~~~f-----p~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~ 513 (679)
T PRK05580 439 TERLEEELAELF-----PEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS 513 (679)
T ss_pred HHHHHHHHHHhC-----CCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC
Confidence 344455554432 24568999999874 5688899999999999999999999999999999884 532111 1
Q ss_pred eeccCCCCcccceeEeehHhhHHHhcCcCCCC-CCcEEEE
Q 047202 279 NRYNSQKKLSSMVEDWISQANARQRRGRAGRV-KPGICYS 317 (735)
Q Consensus 279 ~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~r 317 (735)
..|..... .-+.+.|++|||||. .+|.|+-
T Consensus 514 pdfra~Er---------~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 514 PDFRASER---------TFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred CccchHHH---------HHHHHHHHHhhccCCCCCCEEEE
Confidence 11221111 135678999999994 4698873
No 85
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.26 E-value=1.9e-11 Score=129.04 Aligned_cols=108 Identities=18% Similarity=0.158 Sum_probs=86.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc------------
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI------------ 257 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI------------ 257 (735)
-.|.+|+|+++.+....+.-.|+.- ++.-..|.|.||..-|.-+.+.|-.|...||+||+.
T Consensus 267 I~gKsliFVNtIdr~YrLkLfLeqF-------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~k 339 (569)
T KOG0346|consen 267 IRGKSLIFVNTIDRCYRLKLFLEQF-------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVK 339 (569)
T ss_pred hcCceEEEEechhhhHHHHHHHHHh-------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcccc
Confidence 4789999999998888776666543 455678999999999999999999999999999991
Q ss_pred -----------------------cccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-Cc
Q 047202 258 -----------------------AETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PG 313 (735)
Q Consensus 258 -----------------------AEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G 313 (735)
+.+||++..|..|||+.++ -+--+|.||+||++|.. +|
T Consensus 340 gk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P------------------~t~~sYIHRvGRTaRg~n~G 401 (569)
T KOG0346|consen 340 GKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFP------------------ETVTSYIHRVGRTARGNNKG 401 (569)
T ss_pred ccccccCCCCccccccccCchhchhccccchheeeeeecCCC------------------CchHHHHHhccccccCCCCC
Confidence 2367999999999994432 23457889999999976 49
Q ss_pred EEEEceehh
Q 047202 314 ICYSLYTRH 322 (735)
Q Consensus 314 ~c~rL~t~~ 322 (735)
....+.+..
T Consensus 402 talSfv~P~ 410 (569)
T KOG0346|consen 402 TALSFVSPK 410 (569)
T ss_pred ceEEEecch
Confidence 887766543
No 86
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.25 E-value=2.4e-11 Score=112.52 Aligned_cols=103 Identities=25% Similarity=0.300 Sum_probs=90.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
..+.+|||++....++.+.+.|... ...+.++||+++..++..+++.+..|..+|+++|+.++.|+++|++.+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~ 99 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSV 99 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCE
Confidence 5789999999999999999988752 356999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEE
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYS 317 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~r 317 (735)
||-.+ + |.+.....|+.||+||.+ .|.|+.
T Consensus 100 vi~~~--------~----------~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 100 VINYD--------L----------PWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred EEEeC--------C----------CCCHHHheecccccccCCCCceEEe
Confidence 98633 2 567788889999999988 588875
No 87
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.24 E-value=9.7e-11 Score=135.92 Aligned_cols=105 Identities=18% Similarity=0.168 Sum_probs=88.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCC----
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITID---- 265 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIp---- 265 (735)
.+.++|||+++.+..+.+.+.|... ++....|||.+...++..++..+.+| +|.||||+|.+|++|+
T Consensus 423 ~~~pvLIft~s~~~se~ls~~L~~~-------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~ 493 (762)
T TIGR03714 423 TGQPVLLITGSVEMSEIYSELLLRE-------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKG 493 (762)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHC-------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCcc
Confidence 4568999999999999999999764 46688899999999988888887777 7999999999999999
Q ss_pred -----CeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehh
Q 047202 266 -----DVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRH 322 (735)
Q Consensus 266 -----dV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~ 322 (735)
++.+||. |++.+. +.. .||+|||||.| ||.|+-+++.+
T Consensus 494 v~~~GGL~vIit--------~~~ps~----------rid-~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 494 VAELGGLAVIGT--------ERMENS----------RVD-LQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred ccccCCeEEEEe--------cCCCCc----------HHH-HHhhhcccCCCCceeEEEEEccc
Confidence 9999997 665432 233 79999999988 59999888864
No 88
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=6.1e-11 Score=137.51 Aligned_cols=107 Identities=20% Similarity=0.254 Sum_probs=87.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCC-ccEEEEeccccccCCCCCCeE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEK-IRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g-~rkVIlaTnIAEtsitIpdV~ 268 (735)
.+..+|||+...+.++.+.+.|. +..+||.++..+|.++++.|..| ..+++++|+++.+||++|++.
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~ 562 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEAN 562 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCC
Confidence 56699999999888887777652 23489999999999999999865 779999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEE-------EEceehhhHh
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GIC-------YSLYTRHRYE 325 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c-------~rL~t~~~~~ 325 (735)
+||. +++. +-|+.++.||.||++|.++ |.+ |.|.+++.-+
T Consensus 563 vvI~--------~s~~---------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 563 VLIQ--------ISSH---------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred EEEE--------eCCC---------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 9996 3332 2378899999999999887 444 8888876544
No 89
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.23 E-value=5.6e-11 Score=139.09 Aligned_cols=106 Identities=21% Similarity=0.180 Sum_probs=90.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCC---CC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITI---DD 266 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitI---pd 266 (735)
.+.++|||+.+.++.+.+.+.|... ++.+..|||.+...++..+.....+| +|+||||+|.+|++| |+
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~-------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~ 497 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEA-------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEG 497 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC-------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccc
Confidence 4668999999999999999999765 56789999999988888888777666 799999999999999 79
Q ss_pred eE-----EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehh
Q 047202 267 VV-----YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRH 322 (735)
Q Consensus 267 V~-----~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~ 322 (735)
|. +||++.+ |-|...+.||+|||||.| ||.|+-+++.+
T Consensus 498 V~~~GGL~VI~~d~------------------p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 498 VHELGGLAVIGTER------------------MESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred cccccCcEEEeccC------------------CCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 99 9998543 335566789999999988 59999888864
No 90
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.18 E-value=1.3e-10 Score=125.60 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEE-----EecCCCCHHHHHHhcCCCCCCcc
Q 047202 175 YDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLL-----ALHSSVASVDQKKVFLRPPEKIR 249 (735)
Q Consensus 175 ~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~-----~LHs~l~~~eq~~vf~~~~~g~r 249 (735)
.+.+..++....+..+...|+||..-++..+.+.+.|....... ...++ ---.||++.+|+.+.+.|+.|.-
T Consensus 350 l~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~---~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~ 426 (542)
T COG1111 350 LEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKA---RVRFIGQASREGDKGMSQKEQKEIIDQFRKGEY 426 (542)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcc---eeEEeeccccccccccCHHHHHHHHHHHhcCCc
Confidence 34455555555555566789999999999999999987653110 10000 11268999999999999999999
Q ss_pred EEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehh
Q 047202 250 KVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRH 322 (735)
Q Consensus 250 kVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~ 322 (735)
+|+|||.|+|-|++||+|++||= |+|-. |---..||+||+||.++|..|-|.++.
T Consensus 427 nVLVaTSVgEEGLDIp~vDlVif--------YEpvp----------SeIR~IQR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 427 NVLVATSVGEEGLDIPEVDLVIF--------YEPVP----------SEIRSIQRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred eEEEEcccccccCCCCcccEEEE--------ecCCc----------HHHHHHHhhCccccCCCCeEEEEEecC
Confidence 99999999999999999999995 77642 344578999999999999999999986
No 91
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.17 E-value=2.6e-11 Score=102.29 Aligned_cols=72 Identities=24% Similarity=0.269 Sum_probs=65.9
Q ss_pred CcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHH
Q 047202 222 SDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANAR 301 (735)
Q Consensus 222 ~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~ 301 (735)
++.+..+||.++.++++.+++.+..|..+|++||++++.||++|++.+||..+. +-|...+.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~------------------~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDP------------------PWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSS------------------ESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeecccccccccccccccccccc------------------CCCHHHHH
Confidence 577999999999999999999999999999999999999999999999998542 56788899
Q ss_pred HhcCcCCCCC
Q 047202 302 QRRGRAGRVK 311 (735)
Q Consensus 302 QR~GRAGR~~ 311 (735)
||.||+||.+
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999974
No 92
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.15 E-value=3.8e-11 Score=133.76 Aligned_cols=251 Identities=21% Similarity=0.305 Sum_probs=151.1
Q ss_pred CCCCCccEEEEcccc-----cCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCC-----CCeEee
Q 047202 10 KNLTGVTHVIVDEVH-----ERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGD-----CPVITA 78 (735)
Q Consensus 10 ~~L~~~s~vIiDEvH-----ER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~-----~pvi~i 78 (735)
.-++.+..||.||+| ||++--.=-+.+| + ++.|.|.+|||+ |+..|++|... |.|+-.
T Consensus 231 EvmrEVaWVIFDEIHYMRDkERGVVWEETIIll----P-------~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYT 299 (1041)
T KOG0948|consen 231 EVMREVAWVIFDEIHYMRDKERGVVWEETIILL----P-------DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYT 299 (1041)
T ss_pred hHhheeeeEEeeeehhccccccceeeeeeEEec----c-------ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEee
Confidence 347889999999999 7776433222222 2 468999999999 99999999752 677877
Q ss_pred CCceecceEEechhhHhhhhhhcccchHHH---------HH-hhhccCCC--CcccccCccccccCCCCCCCcccccccC
Q 047202 79 EGRTHPVTTYFLEDVYESINYRLALDSAAA---------IR-YEASSKSG--PVNNRRGKKNLVLSGWGDDSLLSEEYIN 146 (735)
Q Consensus 79 ~gr~~pV~~~~led~~~~~~~~~~~~~~~~---------~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (735)
.-|.-|.+.|-...- ..+-.+-.+.... .+ ........ ...+.+|++..... .+
T Consensus 300 dyRPTPLQHyifP~g--gdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~-~~----------- 365 (1041)
T KOG0948|consen 300 DYRPTPLQHYIFPAG--GDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGG-KG----------- 365 (1041)
T ss_pred cCCCCcceeeeecCC--CCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCC-CC-----------
Confidence 888888876522100 0000000000000 00 00000000 00011111110000 00
Q ss_pred CCCCCCCCCCccHHHHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhh-----------
Q 047202 147 PYYDPSDYGSYSEQTRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASY----------- 215 (735)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~----------- 215 (735)
+..- -+..++..|... .--+++||.=+..|++..+-.+....
T Consensus 366 -----------------------~~~s---~i~kiVkmi~~~-~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~ 418 (1041)
T KOG0948|consen 366 -----------------------PGDS---DIYKIVKMIMER-NYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVE 418 (1041)
T ss_pred -----------------------CCcc---cHHHHHHHHHhh-cCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHH
Confidence 0000 122344444432 34589999999999987765543211
Q ss_pred --------ccCCC----CC---------cEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCC
Q 047202 216 --------RFGGP----SS---------DWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCG 274 (735)
Q Consensus 216 --------~~~~~----~~---------~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG 274 (735)
.++.. +. --|-.+||||-+--..-|.--|..|-.||+.||-.-.-|++.|.-++|.-
T Consensus 419 ~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT-- 496 (1041)
T KOG0948|consen 419 TIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT-- 496 (1041)
T ss_pred HHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe--
Confidence 00000 00 13667899998876666655678999999999999999999999888863
Q ss_pred cccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC---cEEEEceehh
Q 047202 275 RHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP---GICYSLYTRH 322 (735)
Q Consensus 275 ~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~---G~c~rL~t~~ 322 (735)
..+.||-.. -.|||-.+|.|++|||||.|- |+|+-+..+.
T Consensus 497 --~~rKfDG~~------fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 497 --AVRKFDGKK------FRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred --eccccCCcc------eeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 334455433 489999999999999999873 9999998864
No 93
>PRK14701 reverse gyrase; Provisional
Probab=99.15 E-value=1.6e-10 Score=145.31 Aligned_cols=117 Identities=11% Similarity=-0.066 Sum_probs=88.3
Q ss_pred CCcEEEEcCCHHHH---HHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEec----cccccCCC
Q 047202 191 EGAILVFLPGVAEI---HILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIAT----NIAETSIT 263 (735)
Q Consensus 191 ~g~iLVFlpg~~eI---~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaT----nIAEtsit 263 (735)
+...|||+|+.+.+ +.+++.|... ++.+.++||+ |.++++.|..|...|+||| ++|.+||+
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~~-------Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGID 397 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLED-------GFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLD 397 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHHC-------CCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCc
Confidence 34689999987754 7888888764 6889999995 7788999999999999999 69999999
Q ss_pred CCC-eEEEEeCCccccee----ccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHh
Q 047202 264 IDD-VVYVFDCGRHKENR----YNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYE 325 (735)
Q Consensus 264 Ipd-V~~VIDsG~~k~~~----yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~ 325 (735)
||+ |+|||..|.+|.+. |.+.... .|. ...+.++.|||||.+ |+.|+-.|......
T Consensus 398 iP~~Vryvi~~~~Pk~~~~~e~~~~~~~~-----~~~-~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~ 459 (1638)
T PRK14701 398 LPERIRFAVFYGVPKFRFRVDLEDPTIYR-----ILG-LLSEILKIEEELKEGIPIEGVLDVFPEDVE 459 (1638)
T ss_pred cCCccCEEEEeCCCCCCcchhhcccchhh-----hhc-chHHHHHhhhhcccCCcchhHHHhHHHHHH
Confidence 999 99999999999431 3322211 111 234567889999977 57787555555443
No 94
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.13 E-value=1.7e-10 Score=134.54 Aligned_cols=124 Identities=18% Similarity=0.158 Sum_probs=100.9
Q ss_pred HHHHHHHHcc-CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 179 EDLVCHVDET-CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 179 ~~ll~~i~~~-~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
..++..|... ..+..+|||+++...++.+.+.|... ++.+..+||.++..+|.+++..++.|...|+||||+
T Consensus 429 ~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~-------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 429 DDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL-------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh-------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 3444445432 24668999999999999999999764 467889999999999999999999999999999999
Q ss_pred cccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehh
Q 047202 258 AETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRH 322 (735)
Q Consensus 258 AEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~ 322 (735)
+++|+++|+|.+||.+ |...- ..+-|..++.||+|||||..+|.|+-+++..
T Consensus 502 L~rGfDiP~v~lVvi~--------Dadif-----G~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 502 LREGLDLPEVSLVAIL--------DADKE-----GFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred hcCCeeeCCCcEEEEe--------Ccccc-----cCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 9999999999999973 32110 1234667899999999999999998887753
No 95
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.11 E-value=6.6e-10 Score=126.97 Aligned_cols=266 Identities=23% Similarity=0.287 Sum_probs=153.4
Q ss_pred CCCCCCccEEEEcccc-----cCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCCC-----CeEe
Q 047202 9 DKNLTGVTHVIVDEVH-----ERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGDC-----PVIT 77 (735)
Q Consensus 9 d~~L~~~s~vIiDEvH-----ER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~~-----pvi~ 77 (735)
-..++++..||+|||| ||++--.=.+.+| + ++.++|++|||+ |...|++|-|.. -||.
T Consensus 398 adliRDvE~VIFDEVHYiND~eRGvVWEEViIMl----P-------~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViS 466 (1248)
T KOG0947|consen 398 ADLIRDVEFVIFDEVHYINDVERGVVWEEVIIML----P-------RHVNFILLSATVPNTLEFADWIGRTKQKTIYVIS 466 (1248)
T ss_pred cchhhccceEEEeeeeecccccccccceeeeeec----c-------ccceEEEEeccCCChHHHHHHhhhccCceEEEEe
Confidence 3457889999999999 8887655554443 2 479999999999 888999999853 3555
Q ss_pred eCCceecceEEechh--hHhhh---------hhhcccchHHHHHhhhccCCCCc---ccccCccccccCCCCCCCccccc
Q 047202 78 AEGRTHPVTTYFLED--VYESI---------NYRLALDSAAAIRYEASSKSGPV---NNRRGKKNLVLSGWGDDSLLSEE 143 (735)
Q Consensus 78 i~gr~~pV~~~~led--~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 143 (735)
...|..|.+.++-.. .+..+ ++..+.+. ..+. .+...+ +.+.|+..... .|+....
T Consensus 467 T~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~---~~~~--ak~~~~~~~~~~~~rgs~~~--ggk~~~~--- 536 (1248)
T KOG0947|consen 467 TSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDS---LKKE--AKFVDVEKSDARGGRGSQKR--GGKTNYH--- 536 (1248)
T ss_pred cCCCccceEEEEEeccceehhhcccchhhhhcchhhhhh---hccc--cccccccccccccccccccc--CCcCCCC---
Confidence 667888887654322 11100 01100000 0000 000000 00111111100 0000000
Q ss_pred ccCCCCCCCCCCCccHHHHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhh--------
Q 047202 144 YINPYYDPSDYGSYSEQTRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASY-------- 215 (735)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~-------- 215 (735)
+ -+..++. ..+.... -..+.+++.|+... .-=+++||+=++.-++..++.|....
T Consensus 537 --~------g~~r~~~-----~~~nrr~---~~~~l~lin~L~k~-~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKs 599 (1248)
T KOG0947|consen 537 --N------GGSRGSG-----IGKNRRK---QPTWLDLINHLRKK-NLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKS 599 (1248)
T ss_pred --C------CCccccc-----ccccccc---cchHHHHHHHHhhc-ccCceEEEEEccccHHHHHHHHhccCcccchhHH
Confidence 0 0000000 0000000 02345677777553 33468888877766666666554210
Q ss_pred -----------ccCCCCC-------------cEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEE
Q 047202 216 -----------RFGGPSS-------------DWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVF 271 (735)
Q Consensus 216 -----------~~~~~~~-------------~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VI 271 (735)
.+.+..+ --|..+|||+=+--..-|..-|..|..||+.||-....||+.|.-++|+
T Consensus 600 eV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF 679 (1248)
T KOG0947|consen 600 EVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVF 679 (1248)
T ss_pred HHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEe
Confidence 0111111 1378899999887776666668889999999999999999999999999
Q ss_pred eCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC---cEEEEceehh
Q 047202 272 DCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP---GICYSLYTRH 322 (735)
Q Consensus 272 DsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~---G~c~rL~t~~ 322 (735)
|+=+- +|-.. -.-+.-.+|.|++|||||.|= |+++-+.+..
T Consensus 680 ~Sl~K----hDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 680 SSLRK----HDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred eehhh----ccCcc------eeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 86432 22111 244567889999999999873 9888877754
No 96
>PRK09401 reverse gyrase; Reviewed
Probab=99.10 E-value=3.8e-10 Score=138.90 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=65.1
Q ss_pred CcEEEEcCCHHH---HHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEe----ccccccCCCC
Q 047202 192 GAILVFLPGVAE---IHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIA----TNIAETSITI 264 (735)
Q Consensus 192 g~iLVFlpg~~e---I~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIla----TnIAEtsitI 264 (735)
+..|||+|+... ++.+.+.|... ++.+..+||+| ++.++.|.+|+.+|+|| ||+|.+||+|
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~~-------gi~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDi 396 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLEDL-------GINAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDL 396 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHHC-------CCcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCC
Confidence 468999998666 88999988765 57899999999 23458899999999999 7999999999
Q ss_pred CC-eEEEEeCCccc
Q 047202 265 DD-VVYVFDCGRHK 277 (735)
Q Consensus 265 pd-V~~VIDsG~~k 277 (735)
|+ |+|||+.|.+|
T Consensus 397 P~~IryVI~y~vP~ 410 (1176)
T PRK09401 397 PERIRYAIFYGVPK 410 (1176)
T ss_pred CcceeEEEEeCCCC
Confidence 99 89999999998
No 97
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.07 E-value=6.1e-10 Score=130.64 Aligned_cols=112 Identities=20% Similarity=0.117 Sum_probs=96.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
.+..++||+++...++.+.+.|... ++.+..+||.++..+|..++..++.|...|+|||+++++|+++|++++
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~-------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~l 517 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL-------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSL 517 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc-------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcE
Confidence 4568999999999999999999754 567899999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceeh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTR 321 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~ 321 (735)
||.+..... ..|-+..++.||+||+||...|.|+.+++.
T Consensus 518 Vii~d~eif-------------G~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 518 VAILDADKE-------------GFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred EEEeCCccc-------------ccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 997432110 123467789999999999988999988884
No 98
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.07 E-value=4.1e-10 Score=128.49 Aligned_cols=118 Identities=22% Similarity=0.274 Sum_probs=92.4
Q ss_pred HccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEec----CCCCHHHHHHhcCCCCCCccEEEEeccccccC
Q 047202 186 DETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALH----SSVASVDQKKVFLRPPEKIRKVIIATNIAETS 261 (735)
Q Consensus 186 ~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LH----s~l~~~eq~~vf~~~~~g~rkVIlaTnIAEts 261 (735)
.+..+..-++||+-.++.+..+...|......+-.+...|-.=+ .+|++.+|+.+++.|..|..+|+|||.|||-|
T Consensus 408 f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEG 487 (746)
T KOG0354|consen 408 FEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEG 487 (746)
T ss_pred hhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhcc
Confidence 33456678999999999999999988743222111111111111 58999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehh
Q 047202 262 ITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRH 322 (735)
Q Consensus 262 itIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~ 322 (735)
++|+.+..||- ||..++- -...||+|| ||...|.|+.|++..
T Consensus 488 LDI~ec~lVIc--------Yd~~snp----------IrmIQrrGR-gRa~ns~~vll~t~~ 529 (746)
T KOG0354|consen 488 LDIGECNLVIC--------YDYSSNP----------IRMVQRRGR-GRARNSKCVLLTTGS 529 (746)
T ss_pred CCcccccEEEE--------ecCCccH----------HHHHHHhcc-ccccCCeEEEEEcch
Confidence 99999999996 7766542 235699999 999999999999954
No 99
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.06 E-value=2.2e-10 Score=96.79 Aligned_cols=72 Identities=26% Similarity=0.291 Sum_probs=65.5
Q ss_pred CcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHH
Q 047202 222 SDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANAR 301 (735)
Q Consensus 222 ~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~ 301 (735)
++.+..+||++++++|..++..+..|..+|+++|+++++|+++|++.+||..+. |.+.+.+.
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~------------------~~~~~~~~ 72 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL------------------PWSPASYI 72 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCC------------------CCCHHHHH
Confidence 467999999999999999999999999999999999999999999999998543 66889999
Q ss_pred HhcCcCCCCC
Q 047202 302 QRRGRAGRVK 311 (735)
Q Consensus 302 QR~GRAGR~~ 311 (735)
||.||+||.+
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999964
No 100
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.05 E-value=1.3e-09 Score=125.85 Aligned_cols=106 Identities=23% Similarity=0.217 Sum_probs=88.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCC---
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDD--- 266 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpd--- 266 (735)
.+-++|||+.+.++.+.+.+.|... ++....||+. +.+|...+..+..+.-.|.||||+|.+|++|+.
T Consensus 404 ~grpvLV~t~si~~se~ls~~L~~~-------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V 474 (745)
T TIGR00963 404 KGQPVLVGTTSVEKSELLSNLLKER-------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEV 474 (745)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHc-------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccch
Confidence 4558999999999999999999865 4567789998 777888888888888899999999999999998
Q ss_pred ----eEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehh
Q 047202 267 ----VVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRH 322 (735)
Q Consensus 267 ----V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~ 322 (735)
.-|||.+.+ +-|+-...||+||+||.|. |.+.-+.+.+
T Consensus 475 ~~~GGl~VI~t~~------------------p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 475 KELGGLYVIGTER------------------HESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred hhcCCcEEEecCC------------------CCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 449998543 3456667899999999875 9988887765
No 101
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=9.2e-10 Score=128.21 Aligned_cols=113 Identities=25% Similarity=0.247 Sum_probs=91.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCC---CC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITI---DD 266 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitI---pd 266 (735)
.+-+||||+.+.+..+.+.+.|... ++....||+.+...|...+.....+|. |.||||+|.+|++| ++
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~-------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~ 509 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEA-------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPG 509 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHC-------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcc
Confidence 4668999999999999999999765 456789999999888888888887776 99999999999999 59
Q ss_pred eE-----EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhhhcCCC
Q 047202 267 VV-----YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEKLMRPY 331 (735)
Q Consensus 267 V~-----~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~~~~~~ 331 (735)
|. |||.+.++ -|+-...||+|||||.| ||.+.-+.+-+ +.+|..+
T Consensus 510 V~~~GGLhVI~te~p------------------es~ri~~Ql~GRtGRqG~~G~s~~~~sle--D~l~~~f 560 (796)
T PRK12906 510 VKELGGLAVIGTERH------------------ESRRIDNQLRGRSGRQGDPGSSRFYLSLE--DDLMRRF 560 (796)
T ss_pred hhhhCCcEEEeeecC------------------CcHHHHHHHhhhhccCCCCcceEEEEecc--chHHHhh
Confidence 99 99986433 35556679999999987 49988777765 3344443
No 102
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.04 E-value=2.7e-09 Score=112.57 Aligned_cols=118 Identities=16% Similarity=0.137 Sum_probs=90.0
Q ss_pred HHHHHHH-ccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccc
Q 047202 180 DLVCHVD-ETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIA 258 (735)
Q Consensus 180 ~ll~~i~-~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIA 258 (735)
..+.+|. ....+..-+||+++...++-+.+.|... ++..--++|+|.+..|..-+..|..++-.+++.|++|
T Consensus 249 aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~-------g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdva 321 (529)
T KOG0337|consen 249 AALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF-------GGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVA 321 (529)
T ss_pred HHHHHHHhccccccceeEEecccchHHHHHHHHHhc-------CCCccccccccChHhhhhccccccCCccceEEEehhh
Confidence 3344443 3334557999999999999998888754 3456678999999999988999999999999999999
Q ss_pred ccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehh
Q 047202 259 ETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRH 322 (735)
Q Consensus 259 EtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~ 322 (735)
.+|++||...-||+..+ ...-..+. +|.||+.|.+ .|..|-+....
T Consensus 322 aRG~diplldnvinyd~--------p~~~klFv----------hRVgr~aragrtg~aYs~V~~~ 368 (529)
T KOG0337|consen 322 ARGLDIPLLDNVINYDF--------PPDDKLFV----------HRVGRVARAGRTGRAYSLVAST 368 (529)
T ss_pred hccCCCccccccccccC--------CCCCceEE----------EEecchhhccccceEEEEEecc
Confidence 99999999999998443 33222222 6778776665 38888877654
No 103
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.03 E-value=6.5e-10 Score=117.06 Aligned_cols=112 Identities=21% Similarity=0.212 Sum_probs=94.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
..|.-+|++-+++++++++-.|... ++....+|++|-..||..|-+..-.|..-||+||+--..||+-|+|+|
T Consensus 254 ~~GCGIVYCRTR~~cEq~AI~l~~~-------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRF 326 (641)
T KOG0352|consen 254 FTGCGIVYCRTRNECEQVAIMLEIA-------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRF 326 (641)
T ss_pred cCcceEEEeccHHHHHHHHHHhhhc-------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeE
Confidence 4688999999999999998887644 566788999999999999988888899999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhHhh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRYEK 326 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~~~ 326 (735)
||. ||+.. +-|.|-|-.|||||-+. ..|=--|++.+-+.
T Consensus 327 ViH--------W~~~q----------n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 327 VIH--------WSPSQ----------NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNA 366 (641)
T ss_pred EEe--------cCchh----------hhHHHHHhccccccCCCccceeeeecccchHH
Confidence 998 66543 46788899999999876 66655566655443
No 104
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.02 E-value=2.2e-09 Score=132.30 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=68.3
Q ss_pred CcEEEEcCCH---HHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEe----ccccccCCCC
Q 047202 192 GAILVFLPGV---AEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIA----TNIAETSITI 264 (735)
Q Consensus 192 g~iLVFlpg~---~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIla----TnIAEtsitI 264 (735)
+..|||+++. +.++.+.+.|... ++.+..+||+++. ++++.|..|+.+|+|| ||+|.+||+|
T Consensus 327 ~~~IVFv~t~~~~~~a~~l~~~L~~~-------g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDi 395 (1171)
T TIGR01054 327 TGGIVYVSIDYGKEKAEEIAEFLENH-------GVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDL 395 (1171)
T ss_pred CCEEEEEeccccHHHHHHHHHHHHhC-------CceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCC
Confidence 5689999988 9999999999764 5789999999973 5788899999999999 5999999999
Q ss_pred CC-eEEEEeCCcccce
Q 047202 265 DD-VVYVFDCGRHKEN 279 (735)
Q Consensus 265 pd-V~~VIDsG~~k~~ 279 (735)
|+ |+|||++|.++.+
T Consensus 396 p~~V~~vI~~~~P~~~ 411 (1171)
T TIGR01054 396 PERVRYAVFLGVPKFK 411 (1171)
T ss_pred CccccEEEEECCCCEE
Confidence 99 8999999999864
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.01 E-value=6e-10 Score=132.51 Aligned_cols=105 Identities=21% Similarity=0.247 Sum_probs=83.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCC----CCCccEEEEeccccccCCCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRP----PEKIRKVIIATNIAETSITID 265 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~----~~g~rkVIlaTnIAEtsitIp 265 (735)
.++.+||-+++...+..+++.|+... . .++.+||.+...+|.+..... ..+.-.|+|||-+.|.||+|+
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~------~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKG------P-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcC------C-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 56799999999999999999998763 1 699999999999988776521 345668999999999999995
Q ss_pred CeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC---CcEEEEceehh
Q 047202 266 DVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK---PGICYSLYTRH 322 (735)
Q Consensus 266 dV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~c~rL~t~~ 322 (735)
...+| +...+-.|..||+||.+|-+ +|..|..-...
T Consensus 512 -fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 512 -FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred -cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 56665 34556678899999999988 46666544433
No 106
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.01 E-value=7.1e-09 Score=122.95 Aligned_cols=262 Identities=19% Similarity=0.221 Sum_probs=150.5
Q ss_pred CCCCCCccEEEEcccc-----cCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhC-----CCCeEe
Q 047202 9 DKNLTGVTHVIVDEVH-----ERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFG-----DCPVIT 77 (735)
Q Consensus 9 d~~L~~~s~vIiDEvH-----ER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~-----~~pvi~ 77 (735)
..++..+.+||.|||| ||++--.-.+.+| ..++++|++|||+ |++.|+.|++ .+.+|.
T Consensus 224 ~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l-----------P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~ 292 (1041)
T COG4581 224 SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL-----------PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS 292 (1041)
T ss_pred cccccccceEEEEeeeeccccccchhHHHHHHhc-----------CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe
Confidence 4689999999999999 6776555554333 1368999999999 9999999997 466788
Q ss_pred eCCceecceEEechhh--HhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCC
Q 047202 78 AEGRTHPVTTYFLEDV--YESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYG 155 (735)
Q Consensus 78 i~gr~~pV~~~~led~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (735)
.+-|.-|.+.||.... +..++... ........ ..........++ .. .+++ .-+-.|
T Consensus 293 t~~RpvPL~~~~~~~~~l~~lvde~~----~~~~~~~~-~a~~~l~~~~~~---~~--~~~~------~~~~~~------ 350 (1041)
T COG4581 293 TEHRPVPLEHFVYVGKGLFDLVDEKK----KFNAENFP-SANRSLSCFSEK---VR--ETDD------GDVGRY------ 350 (1041)
T ss_pred ecCCCCCeEEEEecCCceeeeecccc----cchhhcch-hhhhhhhccchh---cc--ccCc------cccccc------
Confidence 8889999988876531 00000000 00000000 000000000000 00 0000 000000
Q ss_pred CccHHHHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhh--------------------
Q 047202 156 SYSEQTRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASY-------------------- 215 (735)
Q Consensus 156 ~~~~~~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~-------------------- 215 (735)
...+... .....-......++.++.. ..--.+++|.=++.+++.....+....
T Consensus 351 --a~~~~~~----~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~ 423 (1041)
T COG4581 351 --ARRTKAL----RGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIG 423 (1041)
T ss_pred --ccccccc----CCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHh
Confidence 0000000 0000000001233444432 123367777777666665554443100
Q ss_pred --ccCCC--C-C---------cEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceec
Q 047202 216 --RFGGP--S-S---------DWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRY 281 (735)
Q Consensus 216 --~~~~~--~-~---------~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~y 281 (735)
...+. + + --+..+|++|=+..+..+-.-|..|.+||++||-+..-||++|--++|+ +++.| |
T Consensus 424 ~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K---~ 499 (1041)
T COG4581 424 DLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSK---F 499 (1041)
T ss_pred hcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEE---e
Confidence 00000 0 0 0145689999999999998889999999999999999999999877777 34444 4
Q ss_pred cCCCCcccceeEeehHhhHHHhcCcCCCCCC---cEEEEcee
Q 047202 282 NSQKKLSSMVEDWISQANARQRRGRAGRVKP---GICYSLYT 320 (735)
Q Consensus 282 d~~~~~~~l~~~~iSkasa~QR~GRAGR~~~---G~c~rL~t 320 (735)
|- -.-.|++..++.|.+|||||.+- |...-+-+
T Consensus 500 dG------~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 500 DG------NGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred cC------CceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 42 23489999999999999999874 88887733
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.97 E-value=2.4e-08 Score=122.47 Aligned_cols=149 Identities=19% Similarity=0.328 Sum_probs=99.2
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhcc--CCCCCcEEEEecCCCCHHHHHHhcCCCCCCcc-EEEEecc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRF--GGPSSDWLLALHSSVASVDQKKVFLRPPEKIR-KVIIATN 256 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~--~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~r-kVIlaTn 256 (735)
.++.++.. ..+|..|||+.+.+.++.+.+.|.....- .+.....+..+||..+. +.++++.|..+.. +|+++++
T Consensus 688 ~l~~~l~~-~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvd 764 (1123)
T PRK11448 688 ELAKYLDP-TGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVD 764 (1123)
T ss_pred HHHHHHhc-cCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEec
Confidence 34445533 34589999999999999888888654211 11122346678888754 4557777776664 7999999
Q ss_pred ccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC--c-EEEEceeh-hhHhhhcCCCC
Q 047202 257 IAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP--G-ICYSLYTR-HRYEKLMRPYQ 332 (735)
Q Consensus 257 IAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~--G-~c~rL~t~-~~~~~~~~~~~ 332 (735)
++.||+++|+|..||- +.| .-|+.-+.||.||+.|..| | .+|.+|.- ..|+. +.+..
T Consensus 765 mL~TG~DvP~v~~vVf--------~rp----------vkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~vg~~~~-l~~~~ 825 (1123)
T PRK11448 765 LLTTGIDVPSICNLVF--------LRR----------VRSRILYEQMLGRATRLCPEIGKTHFRIFDAVDIYEA-LESVT 825 (1123)
T ss_pred ccccCCCcccccEEEE--------ecC----------CCCHHHHHHHHhhhccCCccCCCceEEEEehHHHHHh-ccccc
Confidence 9999999999999994 222 2377888999999999988 4 45666663 23333 23322
Q ss_pred --CCccc--ccchHHHHHHHHH
Q 047202 333 --VPEMQ--RMPLVELCLQIKL 350 (735)
Q Consensus 333 --~PEi~--r~~L~~l~L~~k~ 350 (735)
.|.+. ..+|..++-.+..
T Consensus 826 ~~~p~~~~~~~~l~~l~~~~~~ 847 (1123)
T PRK11448 826 TMKPVVVNPNISLEQLVNELTD 847 (1123)
T ss_pred cCCccccCCCCCHHHHHHHHhh
Confidence 35432 4567776544433
No 108
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=98.97 E-value=2.9e-09 Score=126.70 Aligned_cols=121 Identities=20% Similarity=0.180 Sum_probs=103.1
Q ss_pred HHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccccc
Q 047202 181 LVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAET 260 (735)
Q Consensus 181 ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEt 260 (735)
++..+....+.+.++|++..+.+++.+...|... +.....+|++|++.+|+.|-..+-.++.+||+||=.-..
T Consensus 475 ~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~-------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGM 547 (941)
T KOG0351|consen 475 ILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL-------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGM 547 (941)
T ss_pred HHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh-------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccC
Confidence 3344445567889999999999999999999765 355788999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 261 SITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 261 sitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
||+-|||++||..+++| |-.+|-|=+|||||-| +-.|.-+|+-.++..
T Consensus 548 GIdK~DVR~ViH~~lPk------------------s~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 548 GIDKPDVRFVIHYSLPK------------------SFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred CCCCCceeEEEECCCch------------------hHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 99999999999988776 3344559999999976 489999999887755
No 109
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.89 E-value=5e-09 Score=122.95 Aligned_cols=107 Identities=27% Similarity=0.265 Sum_probs=85.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCC---C
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITID---D 266 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIp---d 266 (735)
.+.+||||+.+.+..+.+.+.|... ++....||+ .+.+|...+..+..+.-.|.||||+|.+|++|+ +
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~~-------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~ 667 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRAK-------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEG 667 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHc-------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccc
Confidence 4668999999999999999999765 455678897 467778888888888889999999999999999 5
Q ss_pred eE-----EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhh
Q 047202 267 VV-----YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHR 323 (735)
Q Consensus 267 V~-----~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~ 323 (735)
|. +||.+.++ -|+--..||+|||||.| ||.+.-++|.++
T Consensus 668 V~~vGGL~VIgterh------------------es~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 668 VRELGGLFILGSERH------------------ESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred hhhhCCceeeCCCCC------------------chHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 64 34664432 34445679999999987 599988888754
No 110
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.87 E-value=6.7e-09 Score=124.73 Aligned_cols=120 Identities=12% Similarity=0.086 Sum_probs=95.2
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCC--CccEEEEeccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPE--KIRKVIIATNI 257 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~--g~rkVIlaTnI 257 (735)
..+..+.+......+|||+...+.+..+.+.|.... ++.+..+||+|+..+|.++++.|.. |..+|+|||++
T Consensus 482 ~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~------Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 482 EWLIDFLKSHRSEKVLVICAKAATALQLEQALRERE------GIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred HHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhcc------CeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 344444444457799999999999999999995432 5778999999999999999999875 45899999999
Q ss_pred cccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC---cEEEEceehhh
Q 047202 258 AETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP---GICYSLYTRHR 323 (735)
Q Consensus 258 AEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~---G~c~rL~t~~~ 323 (735)
+.+|++++.+.+||+ ||. |-+...+.||.||+||-|. -..|.++.+..
T Consensus 556 gseGlNlq~a~~VIn--------fDl----------P~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t 606 (956)
T PRK04914 556 GSEGRNFQFASHLVL--------FDL----------PFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGT 606 (956)
T ss_pred hccCCCcccccEEEE--------ecC----------CCCHHHHHHHhcccccCCCCceEEEEEccCCCC
Confidence 999999999999998 664 3345678899999999765 34555555443
No 111
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.64 E-value=1.8e-07 Score=97.32 Aligned_cols=95 Identities=16% Similarity=0.106 Sum_probs=79.9
Q ss_pred HHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc
Q 047202 177 LLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN 256 (735)
Q Consensus 177 li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn 256 (735)
.++++...|.....+..-+|++=++.+.+.+...|..+ ++..-.+|+.|.++++..+-+..-.|+..|||||-
T Consensus 303 ~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~-------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv 375 (695)
T KOG0353|consen 303 CIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH-------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV 375 (695)
T ss_pred HHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc-------CccccccccccCccccccccccccccceEEEEEEe
Confidence 45555555655444446688888999999999999865 56677899999999999998888999999999999
Q ss_pred ccccCCCCCCeEEEEeCCcccc
Q 047202 257 IAETSITIDDVVYVFDCGRHKE 278 (735)
Q Consensus 257 IAEtsitIpdV~~VIDsG~~k~ 278 (735)
....||+-|||+|||.-.++|.
T Consensus 376 afgmgidkpdvrfvihhsl~ks 397 (695)
T KOG0353|consen 376 AFGMGIDKPDVRFVIHHSLPKS 397 (695)
T ss_pred eecccCCCCCeeEEEecccchh
Confidence 9999999999999999888883
No 112
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.57 E-value=1e-07 Score=100.74 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=91.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEE
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYV 270 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~V 270 (735)
-...++|+.+..+++.+.+.+.+.. ...+..++||+..-+.|++.-++.|..+..|.++||++|.+|++|-++-||
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkg----g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~ 580 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKG----GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFM 580 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcC----CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceE
Confidence 4567899999999999888876542 235678999999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEcee
Q 047202 271 FDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYT 320 (735)
Q Consensus 271 IDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t 320 (735)
|+.- .|-.|.+|.+|.||.||... |..+.|.-
T Consensus 581 invt------------------lpd~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 581 INVT------------------LPDDKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred EEEe------------------cCcccchhhhhhhccchhhhcceeEEEee
Confidence 9843 34456778899999999754 88877653
No 113
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.56 E-value=4.3e-07 Score=106.92 Aligned_cols=73 Identities=18% Similarity=0.085 Sum_probs=63.2
Q ss_pred HHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccC
Q 047202 182 VCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETS 261 (735)
Q Consensus 182 l~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEts 261 (735)
+..++. .+-+||||+.+.+..+.+.+.|... ++....||+.+...|+..+.+.+.+| .|.||||+|.+|
T Consensus 437 i~~~~~--~g~PVLVgt~Sie~sE~ls~~L~~~-------gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRG 505 (896)
T PRK13104 437 VRECGV--RKQPVLVGTVSIEASEFLSQLLKKE-------NIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRG 505 (896)
T ss_pred HHHHHh--CCCCEEEEeCcHHHHHHHHHHHHHc-------CCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCC
Confidence 334444 4568999999999999999999865 56788999999999999999999999 499999999999
Q ss_pred CCCC
Q 047202 262 ITID 265 (735)
Q Consensus 262 itIp 265 (735)
++|.
T Consensus 506 tDI~ 509 (896)
T PRK13104 506 TDIV 509 (896)
T ss_pred ccee
Confidence 9985
No 114
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.53 E-value=1.1e-06 Score=98.99 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=81.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
....++||.........+...+... +. +..+.+..+..||..+++.|+.|..++++++-|+..|++||++..
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~-------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~ 353 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAP-------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADV 353 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCC-------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcE
Confidence 3568999999999999998877543 23 778899999999999999999988999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP 312 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~ 312 (735)
+|=. .. .-|+..+.||.||.=|..+
T Consensus 354 ~i~~---------~~---------t~S~~~~~Q~lGR~LR~~~ 378 (442)
T COG1061 354 LIIL---------RP---------TGSRRLFIQRLGRGLRPAE 378 (442)
T ss_pred EEEe---------CC---------CCcHHHHHHHhhhhccCCC
Confidence 9942 11 2377889999999988443
No 115
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.47 E-value=1e-06 Score=103.50 Aligned_cols=75 Identities=17% Similarity=0.077 Sum_probs=63.4
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE 259 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE 259 (735)
+-+..+++ .+-+||||+.+.+..+.+.+.|... ++....||+..+..|+..+.+.+.+|. |.||||+|.
T Consensus 440 ~ei~~~~~--~GrpVLV~t~sv~~se~ls~~L~~~-------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAG 508 (908)
T PRK13107 440 KDIKDCRE--RGQPVLVGTVSIEQSELLARLMVKE-------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAG 508 (908)
T ss_pred HHHHHHHH--cCCCEEEEeCcHHHHHHHHHHHHHC-------CCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcC
Confidence 33444454 3558999999999999999988765 466788999999999999999999987 999999999
Q ss_pred cCCCCC
Q 047202 260 TSITID 265 (735)
Q Consensus 260 tsitIp 265 (735)
+|++|.
T Consensus 509 RGTDIk 514 (908)
T PRK13107 509 RGTDIV 514 (908)
T ss_pred CCccee
Confidence 999986
No 116
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.46 E-value=8.5e-07 Score=104.25 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=62.8
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
+...+...+. .+.+||||+.+.+..+.+.+.|... ++....||+. +.+|...+..+..+.-.|.||||+
T Consensus 419 I~~~I~~~~~--~grpVLIft~Si~~se~Ls~~L~~~-------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNm 487 (830)
T PRK12904 419 VVEDIKERHK--KGQPVLVGTVSIEKSELLSKLLKKA-------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNM 487 (830)
T ss_pred HHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHC-------CCceEeccCc--hHHHHHHHHHhcCCCceEEEeccc
Confidence 3344433333 4568999999999999999999765 4667889995 778888888888899999999999
Q ss_pred cccCCCCC
Q 047202 258 AETSITID 265 (735)
Q Consensus 258 AEtsitIp 265 (735)
|.+|++|+
T Consensus 488 AGRGtDI~ 495 (830)
T PRK12904 488 AGRGTDIK 495 (830)
T ss_pred ccCCcCcc
Confidence 99999986
No 117
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.40 E-value=6e-06 Score=98.11 Aligned_cols=98 Identities=18% Similarity=0.106 Sum_probs=64.5
Q ss_pred EEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhc-------CC-------------------CCCCc
Q 047202 195 LVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVF-------LR-------------------PPEKI 248 (735)
Q Consensus 195 LVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf-------~~-------------------~~~g~ 248 (735)
||=+......-.++..|....... ...+.+..+||.-+...|..+. .+ +..+.
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~-~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEE-KYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhcccc-CCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 566666666666666665442211 1245688899999765554432 11 22457
Q ss_pred cEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcE
Q 047202 249 RKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGI 314 (735)
Q Consensus 249 rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~ 314 (735)
..|||||.|.|.|++|+ ...+| +.+.+--+..||+||.-|.+.+.
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~--------------------~~~~~~~sliQ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAI--------------------ADPSSMRSIIQLAGRVNRHRLEK 883 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeee--------------------eccCcHHHHHHHhhcccccccCC
Confidence 79999999999999995 33333 23446678889999999887644
No 118
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.30 E-value=4e-06 Score=91.62 Aligned_cols=102 Identities=24% Similarity=0.115 Sum_probs=80.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhhhccCCCCCc--EEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 192 GAILVFLPGVAEIHILLDRLAASYRFGGPSSD--WLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 192 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~--~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
=..+.|+|.+.-++.++...+....-.+ +.+ .|..+.|+-..++|+++....=.|+.+-|+|||..|-||+|.+.+.
T Consensus 526 ~R~IAFC~~R~~CEL~~~~~R~I~~ET~-~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDA 604 (1034)
T KOG4150|consen 526 LRCIAFCPSRKLCELVLCLTREILAETA-PHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDA 604 (1034)
T ss_pred CcEEEeccHHHHHHHHHHHHHHHHHHhh-HHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhcccccccee
Confidence 3679999999887776544332211011 111 2677889999999999988777899999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP 312 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~ 312 (735)
|+-+|+ |-|-|+..|..|||||...
T Consensus 605 Vl~~GF------------------P~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 605 VLHLGF------------------PGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred EEEccC------------------chhHHHHHHHhccccccCC
Confidence 999985 4588999999999999643
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.19 E-value=4.9e-05 Score=87.74 Aligned_cols=155 Identities=17% Similarity=0.265 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcc--C--CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHH--hcCCCCCCccE
Q 047202 177 LLEDLVCHVDET--C--GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKK--VFLRPPEKIRK 250 (735)
Q Consensus 177 li~~ll~~i~~~--~--~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~--vf~~~~~g~rk 250 (735)
.++..+.+..+. . ..|..|||+......+.+.+.+...+.-.+ +-.+..+-+.-.. .|.. .|.. .+.--.
T Consensus 408 ~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~--~~~a~~IT~d~~~-~q~~Id~f~~-ke~~P~ 483 (875)
T COG4096 408 TVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYN--GRYAMKITGDAEQ-AQALIDNFID-KEKYPR 483 (875)
T ss_pred HHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcccc--CceEEEEeccchh-hHHHHHHHHh-cCCCCc
Confidence 344445444443 1 256899999999999999999987654321 2234444433322 2332 2322 233347
Q ss_pred EEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC--c------EEEEceehh
Q 047202 251 VIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP--G------ICYSLYTRH 322 (735)
Q Consensus 251 VIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~--G------~c~rL~t~~ 322 (735)
|.++-+..-|||++|.|+.+| |+... -||.-++|+.||.=|.+| | ..|.+|.--
T Consensus 484 IaitvdlL~TGiDvpev~nlV---------F~r~V---------rSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 484 IAITVDLLTTGVDVPEVVNLV---------FDRKV---------RSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred eEEehhhhhcCCCchheeeee---------ehhhh---------hhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 999999999999999999888 44322 288999999999999876 3 345555521
Q ss_pred -hHhh-hcCCCCCCcccccchHHHHHHHHHcCC
Q 047202 323 -RYEK-LMRPYQVPEMQRMPLVELCLQIKLLSL 353 (735)
Q Consensus 323 -~~~~-~~~~~~~PEi~r~~L~~l~L~~k~l~~ 353 (735)
.++- .|.+-..++-.+.+|+.=++.......
T Consensus 546 ~~~~~~~~~~~~~e~~~~~~l~~rLF~~~~~~~ 578 (875)
T COG4096 546 DNTEYFEMDPEMREGRVRVSLEQRLFADRLFDL 578 (875)
T ss_pred hhhhhhccCcccccccccchHHHHHhhhhhccC
Confidence 1111 134445566677777765554444333
No 120
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.96 E-value=9.8e-06 Score=80.78 Aligned_cols=56 Identities=23% Similarity=0.439 Sum_probs=45.3
Q ss_pred EEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhhHh
Q 047202 252 IIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHRYE 325 (735)
Q Consensus 252 IlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~~~ 325 (735)
++|||+..+|++|.-|..|+| ||-... -.+|.+|.|||||.+. |..+...+.+.-.
T Consensus 302 ~vat~lfgrgmdiervNi~~N--------Ydmp~~----------~DtYlHrv~rAgrfGtkglaitfvs~e~da 358 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFN--------YDMPED----------SDTYLHRVARAGRFGTKGLAITFVSDENDA 358 (387)
T ss_pred hHHhhhhccccCcccceeeec--------cCCCCC----------chHHHHHhhhhhccccccceeehhcchhhH
Confidence 899999999999999999999 664433 3456799999999886 8888877765433
No 121
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.88 E-value=5.8e-05 Score=83.05 Aligned_cols=115 Identities=17% Similarity=0.253 Sum_probs=84.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHH---HHHhcCCCCCCccEEEEeccccccCCCCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVD---QKKVFLRPPEKIRKVIIATNIAETSITIDD 266 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~e---q~~vf~~~~~g~rkVIlaTnIAEtsitIpd 266 (735)
.+|+.+|=. ++.+|-.+-..++... +..+..++|+||++. |...|.. |.+.-+|+|||+....|+++ +
T Consensus 356 k~GDCvV~F-Skk~I~~~k~kIE~~g------~~k~aVIYGsLPPeTr~aQA~~FNd-~~~e~dvlVAsDAIGMGLNL-~ 426 (700)
T KOG0953|consen 356 KPGDCVVAF-SKKDIFTVKKKIEKAG------NHKCAVIYGSLPPETRLAQAALFND-PSNECDVLVASDAIGMGLNL-N 426 (700)
T ss_pred CCCCeEEEe-ehhhHHHHHHHHHHhc------CcceEEEecCCCCchhHHHHHHhCC-CCCccceEEeeccccccccc-c
Confidence 467776654 4678988888887652 345888999999974 5555654 56788999999999999998 5
Q ss_pred eEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC----cEEEEceehh
Q 047202 267 VVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP----GICYSLYTRH 322 (735)
Q Consensus 267 V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~----G~c~rL~t~~ 322 (735)
|+=||=+-+.| |+ --.+..++-++++|-+|||||.+. |+.=.|+.++
T Consensus 427 IrRiiF~sl~K---ys------g~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 427 IRRIIFYSLIK---YS------GRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred eeEEEEeeccc---CC------cccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 66666333333 32 334678999999999999999864 7776666654
No 122
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.61 E-value=0.00045 Score=81.12 Aligned_cols=100 Identities=23% Similarity=0.257 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCC---
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDD--- 266 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpd--- 266 (735)
.+-+|||...+.+.-+.+.+.|... ++..-.|++.-...|-.-|-+...+| .|.||||.|.+|.+|.=
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~-------gi~h~vLNAk~~e~EA~IIa~AG~~G--aVTIATNMAGRGTDI~Lg~~ 495 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEA-------NIPHTVLNAKQNAREAEIIAKAGQKG--AITIATNMAGRGTDIKLSKE 495 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC-------CCCceeecccchhhHHHHHHhCCCCC--eEEEecccccCCcCccCchh
Confidence 3558999999999999999999764 23333455543333333333333333 69999999999999862
Q ss_pred eE-----EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEE
Q 047202 267 VV-----YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICY 316 (735)
Q Consensus 267 V~-----~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~ 316 (735)
|. |||-+.++.-.+-| .|-+|||||.| ||.+-
T Consensus 496 V~~~GGLhVIgTerheSrRID------------------nQLrGRaGRQGDpGss~ 533 (925)
T PRK12903 496 VLELGGLYVLGTDKAESRRID------------------NQLRGRSGRQGDVGESR 533 (925)
T ss_pred HHHcCCcEEEecccCchHHHH------------------HHHhcccccCCCCCcce
Confidence 22 77766544333332 49999999987 48653
No 123
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.52 E-value=0.00079 Score=78.02 Aligned_cols=104 Identities=26% Similarity=0.284 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCC----
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITID---- 265 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIp---- 265 (735)
.+-+|||...+.++.+.+.+.|... ++....|.+.-...|-.-|-+...+| .|.||||.|.+|.+|.
T Consensus 426 ~GrPVLVgt~sI~~SE~ls~~L~~~-------gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~ 496 (764)
T PRK12326 426 TGQPVLVGTHDVAESEELAERLRAA-------GVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGS 496 (764)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhC-------CCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCC
Confidence 4558999999999999999999765 23344566653333333333443443 5999999999998886
Q ss_pred -----------CeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEcee
Q 047202 266 -----------DVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYT 320 (735)
Q Consensus 266 -----------dV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t 320 (735)
+=-|||=+.++.. +--=.|=+|||||.| ||.+--..|
T Consensus 497 ~~~~~~~V~~~GGLhVIgTerheS------------------rRID~QLrGRaGRQGDpGss~f~lS 545 (764)
T PRK12326 497 DEADRDRVAELGGLHVIGTGRHRS------------------ERLDNQLRGRAGRQGDPGSSVFFVS 545 (764)
T ss_pred cccchHHHHHcCCcEEEeccCCch------------------HHHHHHHhcccccCCCCCceeEEEE
Confidence 2236665544433 333359999999987 587655444
No 124
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.00021 Score=83.68 Aligned_cols=106 Identities=21% Similarity=0.273 Sum_probs=70.6
Q ss_pred cEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHH--HHHHhcCCCCCCccEEEEeccccccCCCCCCeEEE
Q 047202 193 AILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASV--DQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYV 270 (735)
Q Consensus 193 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~--eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~V 270 (735)
.+-.|-+|.+.|++-...+- ++..|+.+-+..+.. .-+..+..+.+|+-.|+|-|-+..-|.+.|+|+.|
T Consensus 485 ~L~~~G~GterieeeL~~~F--------P~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLV 556 (730)
T COG1198 485 HLRAVGPGTERIEEELKRLF--------PGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLV 556 (730)
T ss_pred eeEEecccHHHHHHHHHHHC--------CCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEE
Confidence 46667789988876655542 234566666655442 23456777889999999999999999999999977
Q ss_pred E----eCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCC-CCcEEE
Q 047202 271 F----DCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRV-KPGICY 316 (735)
Q Consensus 271 I----DsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G~c~ 316 (735)
. |+|+-.. .|-...++ -.-+.|=+|||||. .+|..+
T Consensus 557 gvl~aD~~L~~~-DfRA~Er~---------fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 557 GVLDADTGLGSP-DFRASERT---------FQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred EEEechhhhcCC-CcchHHHH---------HHHHHHHHhhhccCCCCCeEE
Confidence 5 5554221 11111111 12356999999997 677664
No 125
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.44 E-value=0.00047 Score=84.04 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=87.6
Q ss_pred HHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCC---CCccEEEEec
Q 047202 179 EDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPP---EKIRKVIIAT 255 (735)
Q Consensus 179 ~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~---~g~rkVIlaT 255 (735)
..++..+.. .+..||||.--..-++.+.+.|... ++....+||+++.++|+.+.+.|. .+..-++|||
T Consensus 477 dkLL~~Lk~--~g~KVLIFSQft~~LdiLed~L~~~-------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLST 547 (1033)
T PLN03142 477 DKLLPKLKE--RDSRVLIFSQMTRLLDILEDYLMYR-------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLST 547 (1033)
T ss_pred HHHHHHHHh--cCCeEEeehhHHHHHHHHHHHHHHc-------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEec
Confidence 344444432 4568999987655555555555432 466888999999999999888773 2344578999
Q ss_pred cccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC---cEEEEceehhhHhh
Q 047202 256 NIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP---GICYSLYTRHRYEK 326 (735)
Q Consensus 256 nIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~---G~c~rL~t~~~~~~ 326 (735)
..+..||++....+||- ||+.- +-+...|+.|||-|-|. =.+|||+++...+.
T Consensus 548 rAGGlGINLt~Ad~VIi--------yD~dW----------NP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEE 603 (1033)
T PLN03142 548 RAGGLGINLATADIVIL--------YDSDW----------NPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEE 603 (1033)
T ss_pred cccccCCchhhCCEEEE--------eCCCC----------ChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHH
Confidence 99999999999999997 66533 34555688888877654 47999999887654
No 126
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=97.23 E-value=0.0037 Score=76.48 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=83.1
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
+.+.|..+... .+|.+|||+|+++.++.+.+.|...... .++.++. .+.. .++.++++.|..|...|+++|+.
T Consensus 662 ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~---~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~s 734 (850)
T TIGR01407 662 IASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEF---EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSS 734 (850)
T ss_pred HHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccc---cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcce
Confidence 34444444433 4689999999999999999998653211 1222322 2222 35666777777888899999999
Q ss_pred cccCCCCCCeE--EEEeCCcccceeccCC----------CCcccceeEee--hHhhHHHhcCcCCCCCC--cEEEEc
Q 047202 258 AETSITIDDVV--YVFDCGRHKENRYNSQ----------KKLSSMVEDWI--SQANARQRRGRAGRVKP--GICYSL 318 (735)
Q Consensus 258 AEtsitIpdV~--~VIDsG~~k~~~yd~~----------~~~~~l~~~~i--Skasa~QR~GRAGR~~~--G~c~rL 318 (735)
...||++|+.. .||=.|++-..--||. .+-..+...-. .--..+|-.||.=|... |..+-|
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred eecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 99999999765 5555676643211111 11111111111 22347899999988764 776643
No 127
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.22 E-value=0.0012 Score=78.85 Aligned_cols=109 Identities=26% Similarity=0.260 Sum_probs=69.7
Q ss_pred HHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccc
Q 047202 179 EDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIA 258 (735)
Q Consensus 179 ~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIA 258 (735)
.+-+..++. .+-+|||-..+.+.-+.+.+.|... ++.--.|.+.....|-.-|-+...+| .|.||||.|
T Consensus 618 i~ei~~~~~--~GrPVLVGT~SVe~SE~lS~~L~~~-------gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMA 686 (1112)
T PRK12901 618 IEEITELSE--AGRPVLVGTTSVEISELLSRMLKMR-------KIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMA 686 (1112)
T ss_pred HHHHHHHHH--CCCCEEEEeCcHHHHHHHHHHHHHc-------CCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCc
Confidence 333444444 4558999999999988888888754 12212233333333433344444444 589999999
Q ss_pred ccCCCCC--------CeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEE
Q 047202 259 ETSITID--------DVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICY 316 (735)
Q Consensus 259 EtsitIp--------dV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~ 316 (735)
.+|-+|. +=-|||=+.++.-.+- -.|=+|||||.| ||.+-
T Consensus 687 GRGTDIkLg~~V~e~GGL~VIgTerheSrRI------------------D~QLrGRaGRQGDPGsS~ 735 (1112)
T PRK12901 687 GRGTDIKLSPEVKAAGGLAIIGTERHESRRV------------------DRQLRGRAGRQGDPGSSQ 735 (1112)
T ss_pred CCCcCcccchhhHHcCCCEEEEccCCCcHHH------------------HHHHhcccccCCCCCcce
Confidence 9999987 3346776554443333 359999999987 58753
No 128
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=97.12 E-value=0.01 Score=70.49 Aligned_cols=102 Identities=11% Similarity=-0.021 Sum_probs=65.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHH---------------------HHHHhcCCCC-CCc
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASV---------------------DQKKVFLRPP-EKI 248 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~---------------------eq~~vf~~~~-~g~ 248 (735)
.|..+||+.++..+..+.+.|........ +...+.++++-..+ ...++...+. ++.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~--~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~ 591 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKF--EASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEEN 591 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhccccc--CCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCC
Confidence 48889999999999888888765421110 11233334332221 1123344443 256
Q ss_pred cEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCC-CCc
Q 047202 249 RKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRV-KPG 313 (735)
Q Consensus 249 rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~-~~G 313 (735)
.+|++.++..-||++.|.+..++ .| .++.-..+.|-.||+-|. .+|
T Consensus 592 ~~ilIVvdmllTGFDaP~l~tLy---------ld----------Kplk~h~LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 592 PKLLIVVDMLLTGFDAPILNTLY---------LD----------KPLKYHGLLQAIARTNRIDGKD 638 (667)
T ss_pred ceEEEEEcccccccCCCccceEE---------Ee----------ccccccHHHHHHHHhccccCCC
Confidence 79999999999999999988776 12 233334577999999994 554
No 129
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=96.93 E-value=0.0065 Score=72.45 Aligned_cols=103 Identities=24% Similarity=0.242 Sum_probs=66.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCC-----
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITID----- 265 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIp----- 265 (735)
+-+|||-..+.+.-+.+...|... ++..-.|.+.-...|-.-|-+...+| .|.||||.|.+|.+|.
T Consensus 568 grPvLigt~si~~se~ls~~L~~~-------gi~h~vLNak~~~~Ea~iia~AG~~g--~VTIATNmAGRGTDIkl~~~v 638 (970)
T PRK12899 568 GNPILIGTESVEVSEKLSRILRQN-------RIEHTVLNAKNHAQEAEIIAGAGKLG--AVTVATNMAGRGTDIKLDEEA 638 (970)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHc-------CCcceecccchhhhHHHHHHhcCCCC--cEEEeeccccCCcccccCchH
Confidence 448999999999989888888754 23333455443233323333333333 6999999999998875
Q ss_pred ---CeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEcee
Q 047202 266 ---DVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYT 320 (735)
Q Consensus 266 ---dV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t 320 (735)
+=-|||-+.++. |+---.|=+|||||.| ||.+--..|
T Consensus 639 ~~~GGLhVIgTer~e------------------s~Rid~Ql~GRagRQGdpGss~f~lS 679 (970)
T PRK12899 639 VAVGGLYVIGTSRHQ------------------SRRIDRQLRGRCARLGDPGAAKFFLS 679 (970)
T ss_pred HhcCCcEEEeeccCc------------------hHHHHHHHhcccccCCCCCceeEEEE
Confidence 122555544333 3333469999999987 498655444
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=96.91 E-value=0.004 Score=74.02 Aligned_cols=73 Identities=14% Similarity=-0.003 Sum_probs=47.7
Q ss_pred HHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccC
Q 047202 182 VCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETS 261 (735)
Q Consensus 182 l~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEts 261 (735)
+..+++ .+-+|||-..+.+.-+.+.+.|.... +..-.|.+.-...|-.-|-+...+| .|.||||.|.+|
T Consensus 442 i~~~~~--~GrPVLVGT~SVe~SE~ls~~L~~~g-------i~h~VLNAk~~~~EA~IIa~AG~~G--aVTIATNMAGRG 510 (913)
T PRK13103 442 IKECMA--LGRPVLVGTATIETSEHMSNLLKKEG-------IEHKVLNAKYHEKEAEIIAQAGRPG--ALTIATNMAGRG 510 (913)
T ss_pred HHHHHh--CCCCEEEEeCCHHHHHHHHHHHHHcC-------CcHHHhccccchhHHHHHHcCCCCC--cEEEeccCCCCC
Confidence 344444 35589999999999999999887642 2222233433333434344444444 599999999999
Q ss_pred CCCC
Q 047202 262 ITID 265 (735)
Q Consensus 262 itIp 265 (735)
-+|.
T Consensus 511 TDIk 514 (913)
T PRK13103 511 TDIL 514 (913)
T ss_pred CCEe
Confidence 9983
No 131
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.0051 Score=68.08 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=96.3
Q ss_pred HHHHHHHHHHcc-CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEec
Q 047202 177 LLEDLVCHVDET-CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIAT 255 (735)
Q Consensus 177 li~~ll~~i~~~-~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaT 255 (735)
-+.+++..|... .....+||-.-+..=.+.+.+.|... ++++..|||.+..-||..+....+.|.-.|+|--
T Consensus 431 QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~-------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI 503 (663)
T COG0556 431 QVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKEL-------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI 503 (663)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhc-------CceEEeeeccchHHHHHHHHHHHhcCCccEEEee
Confidence 355677777553 23468899888888888888888765 6889999999999999999999999999999999
Q ss_pred cccccCCCCCCeEEEE--eCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEE
Q 047202 256 NIAETSITIDDVVYVF--DCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYS 317 (735)
Q Consensus 256 nIAEtsitIpdV~~VI--DsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~r 317 (735)
|..--|++||.|..|- |..+.- -.=|-.|..|=.|||.|.-.|.++-
T Consensus 504 NLLREGLDiPEVsLVAIlDADKeG---------------FLRse~SLIQtIGRAARN~~GkvIl 552 (663)
T COG0556 504 NLLREGLDLPEVSLVAILDADKEG---------------FLRSERSLIQTIGRAARNVNGKVIL 552 (663)
T ss_pred hhhhccCCCcceeEEEEeecCccc---------------cccccchHHHHHHHHhhccCCeEEE
Confidence 9999999999999887 433221 1125567889999999999998764
No 132
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=96.63 E-value=0.046 Score=63.31 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=85.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCcc-E-EEEeccccccCCCCCCe
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIR-K-VIIATNIAETSITIDDV 267 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~r-k-VIlaTnIAEtsitIpdV 267 (735)
.+..+|+|--++.-++.+...|... .++..+.+-|.-+...|+...+.|..+.- . .+++|-+..-|+++-+.
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgA 618 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRA------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGA 618 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhc------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccC
Confidence 3458999988877666666666532 26778999999999999999999876654 3 46789999999998765
Q ss_pred EEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhh
Q 047202 268 VYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEK 326 (735)
Q Consensus 268 ~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~ 326 (735)
.=||= |||.-+- -.-.+|+-|+=|-|-...=+.|||.|...-+.
T Consensus 619 nRVII--------fDPdWNP-------StD~QAreRawRiGQkkdV~VYRL~t~gTIEE 662 (923)
T KOG0387|consen 619 NRVII--------FDPDWNP-------STDNQARERAWRIGQKKDVVVYRLMTAGTIEE 662 (923)
T ss_pred ceEEE--------ECCCCCC-------ccchHHHHHHHhhcCccceEEEEEecCCcHHH
Confidence 54442 5554332 23356778888889888889999999776554
No 133
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=96.40 E-value=0.0045 Score=57.90 Aligned_cols=53 Identities=28% Similarity=0.260 Sum_probs=34.3
Q ss_pred cccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCC
Q 047202 4 CYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVD 62 (735)
Q Consensus 4 ~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~ 62 (735)
++++.--.+.+|++||+||+|=-|..+=...+.+++.-.. ...++|+||||..
T Consensus 85 ~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~------g~~~~i~mTATPP 137 (148)
T PF07652_consen 85 HFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES------GEAKVIFMTATPP 137 (148)
T ss_dssp HHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT------TS-EEEEEESS-T
T ss_pred HHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc------cCeeEEEEeCCCC
Confidence 3455544689999999999997555555566666665432 3479999999983
No 134
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.40 E-value=0.019 Score=68.22 Aligned_cols=67 Identities=18% Similarity=0.078 Sum_probs=46.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCC--CHHHHHHhcCCCCCCccEEEEeccccccCCCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSV--ASVDQKKVFLRPPEKIRKVIIATNIAETSITID 265 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l--~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIp 265 (735)
.+-+|||-..+.+.-+.+.+.|... ++..-.|++.- ...|-.-|-+...+| .|.||||.|.+|.+|-
T Consensus 423 ~grPVLIgT~SIe~SE~ls~~L~~~-------gi~h~vLNAk~~~~~~EA~IIA~AG~~G--~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 423 TGRPILIGTTTIEKSELLSQLLKEY-------RLPHQLLNAKPENVRRESEIVAQAGRKG--SITIATNMAGRGTDII 491 (870)
T ss_pred cCCCEEEeeCCHHHHHHHHHHHHHc-------CCccceeeCCCccchhHHHHHHhcCCCC--cEEEeccccCCCcCee
Confidence 3558999999999999999888764 33344566542 133444444444444 5999999999998874
No 135
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=96.16 E-value=0.0042 Score=59.92 Aligned_cols=51 Identities=25% Similarity=0.409 Sum_probs=31.3
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHH
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLF 66 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f 66 (735)
.+.++++||+||+|+-+.. -....++.++.... ..++.++|+||||+. ...
T Consensus 116 ~~~~~~~iViDE~h~l~~~--~~~~~~~~i~~~~~--~~~~~~~i~~SAT~~-~~~ 166 (169)
T PF00270_consen 116 NISRLSLIVIDEAHHLSDE--TFRAMLKSILRRLK--RFKNIQIILLSATLP-SNV 166 (169)
T ss_dssp TGTTESEEEEETHHHHHHT--THHHHHHHHHHHSH--TTTTSEEEEEESSST-HHH
T ss_pred ccccceeeccCcccccccc--cHHHHHHHHHHHhc--CCCCCcEEEEeeCCC-hhH
Confidence 4566999999999974432 11113333333221 113689999999997 444
No 136
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=96.12 E-value=0.0049 Score=72.35 Aligned_cols=97 Identities=23% Similarity=0.240 Sum_probs=70.8
Q ss_pred EEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhc
Q 047202 225 LLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRR 304 (735)
Q Consensus 225 i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~ 304 (735)
|-.+|++|...+|..|.--|+.|...|++||-...-||+.|=-++|.- ..+|+.. --+++|++
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~--------------gDsLQL~---plny~Qma 1027 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA--------------GDSLQLD---PLNYKQMA 1027 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe--------------ccccccC---chhHHhhh
Confidence 667899999999999988999999999999999999999996555541 1233333 35789999
Q ss_pred CcCCCCCC---cE-EEEceehhhHhhhcCCCCCCccccc
Q 047202 305 GRAGRVKP---GI-CYSLYTRHRYEKLMRPYQVPEMQRM 339 (735)
Q Consensus 305 GRAGR~~~---G~-c~rL~t~~~~~~~~~~~~~PEi~r~ 339 (735)
|||||.|= |. .|-=.+...-.+++ ....|.|+-.
T Consensus 1028 GRAGRRGFD~lGnV~FmgiP~~kv~rLl-ts~L~diqG~ 1065 (1330)
T KOG0949|consen 1028 GRAGRRGFDTLGNVVFMGIPRQKVQRLL-TSLLPDIQGA 1065 (1330)
T ss_pred ccccccccccccceEEEeCcHHHHHHHH-HHhhhcccCC
Confidence 99999862 54 44444555545543 3355666554
No 137
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=95.82 E-value=0.07 Score=61.66 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=89.1
Q ss_pred HHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCC---CCccEEEEec
Q 047202 179 EDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPP---EKIRKVIIAT 255 (735)
Q Consensus 179 ~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~---~g~rkVIlaT 255 (735)
..++..+.+ .+..||||- .+..+.+.|..-+.+. ++...-+-|+.+.++|..+.+.|. .-+-=.+|||
T Consensus 477 DkLL~~Lk~--~GhRVLIFS----Qmt~mLDILeDyc~~R---~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST 547 (971)
T KOG0385|consen 477 DKLLPKLKE--QGHRVLIFS----QMTRMLDILEDYCMLR---GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST 547 (971)
T ss_pred HHHHHHHHh--CCCeEEEeH----HHHHHHHHHHHHHHhc---CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec
Confidence 344444443 466899994 4566677776655443 577899999999999988876653 2233457899
Q ss_pred cccccCCCCCCeEEEE--eCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhh
Q 047202 256 NIAETSITIDDVVYVF--DCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEK 326 (735)
Q Consensus 256 nIAEtsitIpdV~~VI--DsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~ 326 (735)
=...-||++-..+.|| ||. |||... -+|.+|+-|-|-..|=++|||.|+..-+.
T Consensus 548 RAGGLGINL~aADtVIlyDSD------WNPQ~D-----------LQAmDRaHRIGQ~K~V~V~RLitentVEe 603 (971)
T KOG0385|consen 548 RAGGLGINLTAADTVILYDSD------WNPQVD-----------LQAMDRAHRIGQKKPVVVYRLITENTVEE 603 (971)
T ss_pred cccccccccccccEEEEecCC------CCchhh-----------hHHHHHHHhhCCcCceEEEEEeccchHHH
Confidence 9999999988777776 544 555443 35789999999999999999999876544
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=95.57 E-value=0.085 Score=62.88 Aligned_cols=67 Identities=21% Similarity=0.084 Sum_probs=44.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCC-CC-HHHHHHhcCCCCCCccEEEEeccccccCCCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSS-VA-SVDQKKVFLRPPEKIRKVIIATNIAETSITID 265 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~-l~-~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIp 265 (735)
.+-+|||-..+.+.-+.+.+.|... ++..-.|.+. .. ..|-.-|-+...+| .|.||||.|.+|-+|.
T Consensus 438 ~GrPVLIgT~SVe~SE~ls~~L~~~-------gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIk 506 (939)
T PRK12902 438 QGRPVLVGTTSVEKSELLSALLQEQ-------GIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIATNMAGRGTDII 506 (939)
T ss_pred CCCCEEEeeCCHHHHHHHHHHHHHc-------CCchheeeCCCcchHhHHHHHHhcCCCC--cEEEeccCCCCCcCEe
Confidence 3558999999999999999988764 2323335553 22 22323233333333 5999999999997763
No 139
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.86 E-value=0.36 Score=57.95 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=63.0
Q ss_pred cEEEEcCC---HHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEe----ccccccCCCCC
Q 047202 193 AILVFLPG---VAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIA----TNIAETSITID 265 (735)
Q Consensus 193 ~iLVFlpg---~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIla----TnIAEtsitIp 265 (735)
..|||+|. .+..+.+.+.|+.+ ++.+...|+.- ++.++.|..|+..|+|. .+++-+||+.|
T Consensus 337 GgLIfV~~d~G~e~aeel~e~Lr~~-------Gi~a~~~~a~~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP 404 (1187)
T COG1110 337 GGLIFVPIDYGREKAEELAEYLRSH-------GINAELIHAEK-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLP 404 (1187)
T ss_pred CeEEEEEcHHhHHHHHHHHHHHHhc-------CceEEEeeccc-----hhhhhhhccCceeEEEEecccccceeecCCch
Confidence 67999997 88888999999876 68888888842 66788899999999885 57899999999
Q ss_pred -CeEEEEeCCcccce
Q 047202 266 -DVVYVFDCGRHKEN 279 (735)
Q Consensus 266 -dV~~VIDsG~~k~~ 279 (735)
-|+|+|=.|.+|.+
T Consensus 405 ~rirYaIF~GvPk~r 419 (1187)
T COG1110 405 HRIRYAVFYGVPKFR 419 (1187)
T ss_pred hheeEEEEecCCcee
Confidence 57899999998753
No 140
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=94.78 E-value=0.48 Score=56.77 Aligned_cols=132 Identities=13% Similarity=0.040 Sum_probs=78.2
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhc-CCCCCCccEEEEecc
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVF-LRPPEKIRKVIIATN 256 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf-~~~~~g~rkVIlaTn 256 (735)
+.+.|..+.. .+|.+|||+|++..++.+.+.|.... +..+ ..++..+...-.+-| +.+..|...|+++|.
T Consensus 523 ~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~~------~~~l-l~Q~~~~~~~ll~~f~~~~~~~~~~VL~g~~ 593 (697)
T PRK11747 523 MAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRDL------RLML-LVQGDQPRQRLLEKHKKRVDEGEGSVLFGLQ 593 (697)
T ss_pred HHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHhc------CCcE-EEeCCchHHHHHHHHHHHhccCCCeEEEEec
Confidence 3444555555 35558999999999999999886531 1222 335554333222223 233456678999999
Q ss_pred ccccCCCCCC--eEEEEeCCcccceeccCCC----------CcccceeE--eehHhhHHHhcCcCCCCCC--cEEEEc
Q 047202 257 IAETSITIDD--VVYVFDCGRHKENRYNSQK----------KLSSMVED--WISQANARQRRGRAGRVKP--GICYSL 318 (735)
Q Consensus 257 IAEtsitIpd--V~~VIDsG~~k~~~yd~~~----------~~~~l~~~--~iSkasa~QR~GRAGR~~~--G~c~rL 318 (735)
..--||++|| .+.||=.|++-..--||.. +-+.+... |-.--..+|=.||.=|... |..+-|
T Consensus 594 sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~il 671 (697)
T PRK11747 594 SFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTIL 671 (697)
T ss_pred cccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEE
Confidence 9999999986 7888877776432111211 11111111 1112237888999977654 876644
No 141
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=94.76 E-value=0.035 Score=55.46 Aligned_cols=47 Identities=19% Similarity=0.233 Sum_probs=29.3
Q ss_pred CCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCC
Q 047202 10 KNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVD 62 (735)
Q Consensus 10 ~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~ 62 (735)
-.+.+++++|+||+|+=. +.. ....+..+.... .++.++++||||+.
T Consensus 139 ~~~~~l~~lIvDE~h~~~-~~~-~~~~~~~~~~~l----~~~~~~~~~SAT~~ 185 (203)
T cd00268 139 LDLSKVKYLVLDEADRML-DMG-FEDQIREILKLL----PKDRQTLLFSATMP 185 (203)
T ss_pred CChhhCCEEEEeChHHhh-ccC-hHHHHHHHHHhC----CcccEEEEEeccCC
Confidence 357889999999999622 111 112222222222 14789999999995
No 142
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=94.71 E-value=0.27 Score=58.67 Aligned_cols=151 Identities=15% Similarity=0.112 Sum_probs=93.4
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE 259 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE 259 (735)
..+..+.. ..+|.+|||+|+.+..+.+.+.+..... ...+..++.-+.++..+-|....++ -++|+|.-..
T Consensus 469 ~~i~~~~~-~~~~~~lvlF~Sy~~l~~~~~~~~~~~~------~~~v~~q~~~~~~~~l~~f~~~~~~--~~lv~~gsf~ 539 (654)
T COG1199 469 AYLREILK-ASPGGVLVLFPSYEYLKRVAERLKDERS------TLPVLTQGEDEREELLEKFKASGEG--LILVGGGSFW 539 (654)
T ss_pred HHHHHHHh-hcCCCEEEEeccHHHHHHHHHHHhhcCc------cceeeecCCCcHHHHHHHHHHhcCC--eEEEeecccc
Confidence 34444433 3577999999999999999999876531 1356778888777666666655444 8999999999
Q ss_pred cCCCCCCe--EEEEeCCcccce----------eccCCCCcc--cceeEeehHhhHHHhcCcCCCCCC--cEEEEcee---
Q 047202 260 TSITIDDV--VYVFDCGRHKEN----------RYNSQKKLS--SMVEDWISQANARQRRGRAGRVKP--GICYSLYT--- 320 (735)
Q Consensus 260 tsitIpdV--~~VIDsG~~k~~----------~yd~~~~~~--~l~~~~iSkasa~QR~GRAGR~~~--G~c~rL~t--- 320 (735)
-||++||= +.||=.|++-.. .|....+.. .....+..--...|=.||+=|... |+++-|=.
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R~~ 619 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKRYA 619 (654)
T ss_pred CcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecccch
Confidence 99999964 555545654332 222222211 122233344457899999988554 88775522
Q ss_pred hhhHhhhcCCCCCCccccc
Q 047202 321 RHRYEKLMRPYQVPEMQRM 339 (735)
Q Consensus 321 ~~~~~~~~~~~~~PEi~r~ 339 (735)
...|...+.+.-.|.+...
T Consensus 620 ~~~y~~~l~~~l~~~~~~~ 638 (654)
T COG1199 620 TKRYGKLLLDSLPPFPKSK 638 (654)
T ss_pred hhhHHHHHHHhCCCCcccc
Confidence 3334444444333344333
No 143
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.98 E-value=0.34 Score=57.31 Aligned_cols=55 Identities=4% Similarity=-0.071 Sum_probs=33.6
Q ss_pred CCCccEEEEcccccCCccHHHHH-HHHHHHHHhhccCCCCCcEEEEecCCCChHHHHh
Q 047202 12 LTGVTHVIVDEVHERSLLGDFLL-IVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSR 68 (735)
Q Consensus 12 L~~~s~vIiDEvHER~~~tD~LL-~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~ 68 (735)
+.+...|||||=|+-+.-.+-.- --.|++...|. ...+..+||.|||...+.+..
T Consensus 255 ~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra--~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 255 VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRA--HQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHH--HHcCCcEEEECCCCCHHHHHH
Confidence 67889999999996433222100 01222222221 114689999999999998754
No 144
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=93.62 E-value=0.24 Score=60.23 Aligned_cols=143 Identities=22% Similarity=0.223 Sum_probs=94.9
Q ss_pred HHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCC---CCCccEEEEec
Q 047202 179 EDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRP---PEKIRKVIIAT 255 (735)
Q Consensus 179 ~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~---~~g~rkVIlaT 255 (735)
..||..+.. .+..||||---..=.+.|.+.|... ++..--|-|++..+-|+.+.+.| ....--.+|||
T Consensus 689 DKLL~rLk~--~GHrVLIFSQMVRmLDIL~eYL~~r-------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLST 759 (1373)
T KOG0384|consen 689 DKLLPRLKE--GGHRVLIFSQMVRMLDILAEYLSLR-------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLST 759 (1373)
T ss_pred HHHHHHHhc--CCceEEEhHHHHHHHHHHHHHHHHc-------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEec
Confidence 344444432 4558999964444344444444432 46677899999999999987765 23345678999
Q ss_pred cccccCCCCCCeEEEE--eCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhhhcCCCCC
Q 047202 256 NIAETSITIDDVVYVF--DCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEKLMRPYQV 333 (735)
Q Consensus 256 nIAEtsitIpdV~~VI--DsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~~~~~~~~ 333 (735)
=...-||++-..+-|| ||. |||.+.+ +|.-|+-|-|-...=..|||.|+..|+..|-+
T Consensus 760 RAGGLGINLatADTVIIFDSD------WNPQNDL-----------QAqARaHRIGQkk~VnVYRLVTk~TvEeEilE--- 819 (1373)
T KOG0384|consen 760 RAGGLGINLATADTVIIFDSD------WNPQNDL-----------QAQARAHRIGQKKHVNVYRLVTKNTVEEEILE--- 819 (1373)
T ss_pred ccCcccccccccceEEEeCCC------CCcchHH-----------HHHHHHHhhcccceEEEEEEecCCchHHHHHH---
Confidence 9999999988666665 655 7776654 34558888888777889999999998875422
Q ss_pred CcccccchHHHHHHHHH
Q 047202 334 PEMQRMPLVELCLQIKL 350 (735)
Q Consensus 334 PEi~r~~L~~l~L~~k~ 350 (735)
---+.+-|+.+|+|.-.
T Consensus 820 RAk~KmvLD~aVIQ~m~ 836 (1373)
T KOG0384|consen 820 RAKLKMVLDHAVIQRMD 836 (1373)
T ss_pred HHHHHhhhHHHHHHhhc
Confidence 01123346666666543
No 145
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=93.39 E-value=0.07 Score=51.98 Aligned_cols=53 Identities=32% Similarity=0.421 Sum_probs=34.7
Q ss_pred CCCCccEEEEcccccCC--ccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC--ChHHHH-hhhC
Q 047202 11 NLTGVTHVIVDEVHERS--LLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV--DSNLFS-RYFG 71 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~--~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~--~~~~f~-~yF~ 71 (735)
....++++||||+|.-. ...+.+..+++.+ .+..++++||||+ +.+.+. .|+.
T Consensus 126 ~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~--------~~~~~~v~~saT~~~~~~~~~~~~~~ 183 (201)
T smart00487 126 ELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL--------PKNVQLLLLSATPPEEIENLLELFLN 183 (201)
T ss_pred CHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC--------CccceEEEEecCCchhHHHHHHHhcC
Confidence 45678899999999755 3334444444332 1468999999999 455554 4444
No 146
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=93.25 E-value=0.61 Score=56.48 Aligned_cols=124 Identities=19% Similarity=0.233 Sum_probs=90.4
Q ss_pred HHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCcc--EEEEecc
Q 047202 179 EDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIR--KVIIATN 256 (735)
Q Consensus 179 ~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~r--kVIlaTn 256 (735)
+-++..+.. .+..+|||-- +..+++.|+.-..+ .++..+-|.|.-..++|+..+++|-...| ..||||-
T Consensus 1266 AiLLqQLk~--eghRvLIfTQ----MtkmLDVLeqFLny---HgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1266 AILLQQLKS--EGHRVLIFTQ----MTKMLDVLEQFLNY---HGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred HHHHHHHHh--cCceEEehhH----HHHHHHHHHHHHhh---cceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 334444433 4568999963 34444444433322 25678889999999999999888865544 5699999
Q ss_pred ccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhh
Q 047202 257 IAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEK 326 (735)
Q Consensus 257 IAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~ 326 (735)
-..+||++-+.+-||= ||..-+ +.=-|+|.-|.-|.|+++.=+.|||.++..-+.
T Consensus 1337 SggvGiNLtgADTVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIEe 1391 (1958)
T KOG0391|consen 1337 SGGVGINLTGADTVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIEE 1391 (1958)
T ss_pred CCccccccccCceEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHHH
Confidence 9999999999999983 555433 333578888999999999999999999876654
No 147
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=92.46 E-value=0.14 Score=56.98 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=42.7
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC--ChHHHHhhhCCCCeEee
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV--DSNLFSRYFGDCPVITA 78 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~--~~~~f~~yF~~~pvi~i 78 (735)
++++++|+|+|||| |.+-.=----+.+..+... .++.++.|+||. +.+.+.+-..+-.+-+|
T Consensus 128 d~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~-----k~~~ilgLTASPGs~~ekI~eV~~nLgIe~v 191 (542)
T COG1111 128 DLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSA-----KNPLILGLTASPGSDLEKIQEVVENLGIEKV 191 (542)
T ss_pred ChHHceEEEechhh-hccCcchHHHHHHHHHHhc-----cCceEEEEecCCCCCHHHHHHHHHhCCcceE
Confidence 58899999999999 5543333333445555433 468899999999 77888877665444333
No 148
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.05 E-value=1.1 Score=53.95 Aligned_cols=135 Identities=16% Similarity=0.127 Sum_probs=77.2
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhcc---CCCCCcEEEEecCCCCHHHHHHhcCCCC----CCccE
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRF---GGPSSDWLLALHSSVASVDQKKVFLRPP----EKIRK 250 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~---~~~~~~~i~~LHs~l~~~eq~~vf~~~~----~g~rk 250 (735)
+...|..+.+. .+|.+|||+|++.-++.+.+.+...... .....+.+-+ .++ .+..++++.+. .|.--
T Consensus 510 l~~~i~~~~~~-~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~---~~~~~~l~~f~~~~~~~~ga 584 (705)
T TIGR00604 510 LGELLVEFSKI-IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDA---QETSDALERYKQAVSEGRGA 584 (705)
T ss_pred HHHHHHHHhhc-CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCc---chHHHHHHHHHHHHhcCCce
Confidence 34455555543 4799999999999999998877643111 0011122222 222 24444555442 24446
Q ss_pred EEEec--cccccCCCCCC--eEEEEeCCcccceeccCCCCc--ccce-------e-Eee---hHhhHHHhcCcCCCCCC-
Q 047202 251 VIIAT--NIAETSITIDD--VVYVFDCGRHKENRYNSQKKL--SSMV-------E-DWI---SQANARQRRGRAGRVKP- 312 (735)
Q Consensus 251 VIlaT--nIAEtsitIpd--V~~VIDsG~~k~~~yd~~~~~--~~l~-------~-~~i---Skasa~QR~GRAGR~~~- 312 (735)
|++|+ ....-||+++| .+.||=.|++-....|+.... ..+. . .|. .--...|=+||+=|...
T Consensus 585 vL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D 664 (705)
T TIGR00604 585 VLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD 664 (705)
T ss_pred EEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc
Confidence 99999 78888999997 677777898864333322110 0000 0 111 11246788899988776
Q ss_pred -cEEEE
Q 047202 313 -GICYS 317 (735)
Q Consensus 313 -G~c~r 317 (735)
|..+-
T Consensus 665 ~G~iil 670 (705)
T TIGR00604 665 YGSIVL 670 (705)
T ss_pred eEEEEE
Confidence 65443
No 149
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=91.83 E-value=0.2 Score=48.64 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc--ccccCCCCCC-
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN--IAETSITIDD- 266 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn--IAEtsitIpd- 266 (735)
.+|.+|||+|+++.++.+.+.+...... .+..++. .+ ..+...+.+.+..+..-|++|+. ...-||+++|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~---~~~~v~~-q~---~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE---KGIPVFV-QG---SKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E----ETSCEEE-ST---CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc---ccceeee-cC---cchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 4699999999999999999887654210 0122222 22 33455566666667888999998 8888999996
Q ss_pred -eEEEEeCCcccceeccCCCCc----------c--cceeEeehHhhHHHhcCcCCCCCC--cEEE
Q 047202 267 -VVYVFDCGRHKENRYNSQKKL----------S--SMVEDWISQANARQRRGRAGRVKP--GICY 316 (735)
Q Consensus 267 -V~~VIDsG~~k~~~yd~~~~~----------~--~l~~~~iSkasa~QR~GRAGR~~~--G~c~ 316 (735)
.+.||=.|++-...-|+.... . .....+-.--...|=.||+=|... |..+
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~ 145 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVII 145 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEE
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEE
Confidence 888888888754333322110 0 000111222347889999988777 5444
No 150
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=91.41 E-value=0.57 Score=51.91 Aligned_cols=102 Identities=19% Similarity=0.218 Sum_probs=70.9
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCC-ccEEEEecccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEK-IRKVIIATNIA 258 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g-~rkVIlaTnIA 258 (735)
+.+...|+. .+..|+||-...-.....+-.|.. -.++|.-++.||.+|++.|.-+ ...-|.-.-++
T Consensus 533 qfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~K------------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVg 599 (776)
T KOG1123|consen 533 QFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGK------------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVG 599 (776)
T ss_pred HHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCC------------ceEECCCchhHHHHHHHhcccCCccceEEEeecc
Confidence 334444553 566899998776655544433321 2368999999999999998644 45678888999
Q ss_pred ccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC
Q 047202 259 ETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK 311 (735)
Q Consensus 259 EtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~ 311 (735)
.|||++|...+.|.- .+ ..=|+-+-.||-||.=|..
T Consensus 600 DtSiDLPEAnvLIQI--------SS---------H~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQI--------SS---------HGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred CccccCCcccEEEEE--------cc---------cccchHHHHHHHHHHHHHh
Confidence 999999999999961 11 1225667779999865543
No 151
>PRK14873 primosome assembly protein PriA; Provisional
Probab=91.20 E-value=0.5 Score=55.98 Aligned_cols=76 Identities=20% Similarity=0.258 Sum_probs=60.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
.++.+||-+|......++.+.|.... + ...|..+||++++.+|.+.|.....|..+|||-|=-|-- .-++|...
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f--~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgL 260 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALL--G---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGL 260 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHc--C---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCE
Confidence 46689999999999999999998654 1 134888999999999999999999999999999876543 23445554
Q ss_pred EE
Q 047202 270 VF 271 (735)
Q Consensus 270 VI 271 (735)
||
T Consensus 261 II 262 (665)
T PRK14873 261 VA 262 (665)
T ss_pred EE
Confidence 44
No 152
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=90.62 E-value=0.57 Score=57.09 Aligned_cols=116 Identities=24% Similarity=0.308 Sum_probs=89.0
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCC--ccEEEEeccccccCCCCCCeEE
Q 047202 192 GAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEK--IRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 192 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g--~rkVIlaTnIAEtsitIpdV~~ 269 (735)
..||||+-=..-++.+.+.|.+... +.+..+.|-|+.++.+|+++.++|-.+ .--.+|.|-|..-|++.-+-+-
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~m----psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKYM----PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhhc----CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCce
Confidence 3699999887777777777765432 245567899999999999999988765 3346789999999999999888
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEK 326 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~ 326 (735)
||= -+-.|||.+.+ +|.-|+-|-|-.+-=-+|||.|+...+.
T Consensus 1417 VVF----vEHDWNPMrDL-----------QAMDRAHRIGQKrvVNVyRlItrGTLEE 1458 (1549)
T KOG0392|consen 1417 VVF----VEHDWNPMRDL-----------QAMDRAHRIGQKRVVNVYRLITRGTLEE 1458 (1549)
T ss_pred EEE----EecCCCchhhH-----------HHHHHHHhhcCceeeeeeeehhcccHHH
Confidence 881 12337776653 4556888888877778999999987654
No 153
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=90.38 E-value=2.2 Score=53.04 Aligned_cols=164 Identities=16% Similarity=0.158 Sum_probs=92.5
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
+...|..+.. ..+|.+|||.|+++.++.+.+.|...... .++.++. . ++....+.++.+.|..+...|+++|..
T Consensus 740 la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~---~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~s 813 (928)
T PRK08074 740 VAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEEL---EGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSS 813 (928)
T ss_pred HHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccc---cCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCc
Confidence 3344444433 25789999999999999999998754211 1222222 2 222223344555555677889999999
Q ss_pred cccCCCCCC--eEEEEeCCcccceeccC----------CCCcccceeE--eehHhhHHHhcCcCCCCCC--cEEE----E
Q 047202 258 AETSITIDD--VVYVFDCGRHKENRYNS----------QKKLSSMVED--WISQANARQRRGRAGRVKP--GICY----S 317 (735)
Q Consensus 258 AEtsitIpd--V~~VIDsG~~k~~~yd~----------~~~~~~l~~~--~iSkasa~QR~GRAGR~~~--G~c~----r 317 (735)
.--||++|| .+.||=.+++-..-=|| ..+-+..... |-.--..+|=.||.=|... |..+ |
T Consensus 814 FwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 814 FWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred ccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 999999997 47777667653211111 1111111111 2233456899999977654 8776 4
Q ss_pred ceehhhHhhhcCCCCCCc--ccccchHHHHHHHH
Q 047202 318 LYTRHRYEKLMRPYQVPE--MQRMPLVELCLQIK 349 (735)
Q Consensus 318 L~t~~~~~~~~~~~~~PE--i~r~~L~~l~L~~k 349 (735)
+.++. |.+.+. ...|. +.+.++.++.-.++
T Consensus 894 ~~~k~-Yg~~~l-~sLP~~~~~~~~~~~~~~~~~ 925 (928)
T PRK08074 894 LTTTS-YGKYFL-ESLPTVPVYEGTLEELLEEVE 925 (928)
T ss_pred cccch-HHHHHH-HhCCCCCcccCCHHHHHHHHH
Confidence 44433 443322 23343 34456666544433
No 154
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=90.24 E-value=5.4 Score=47.59 Aligned_cols=111 Identities=18% Similarity=0.114 Sum_probs=69.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
.+..|-||..+..-.+.+.+..... ...|+.+.|.-+..+-. .=+.-+|++=|.+...|+.+++.-|
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~-------~~~Vl~l~s~~~~~dv~------~W~~~~VviYT~~itvG~Sf~~~HF 347 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARF-------TKKVLVLNSTDKLEDVE------SWKKYDVVIYTPVITVGLSFEEKHF 347 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhc-------CCeEEEEcCCCCccccc------cccceeEEEEeceEEEEeccchhhc
Confidence 4668889998887777776655433 34588888766555221 1245689999999999999875432
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYE 325 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~ 325 (735)
=-=.+..|-..+- .+..+.-|..||.-.......|.-+......
T Consensus 348 ~~~f~yvk~~~~g------------pd~~s~~Q~lgRvR~l~~~ei~v~~d~~~~~ 391 (824)
T PF02399_consen 348 DSMFAYVKPMSYG------------PDMVSVYQMLGRVRSLLDNEIYVYIDASGAR 391 (824)
T ss_pred eEEEEEecCCCCC------------CcHHHHHHHHHHHHhhccCeEEEEEeccccc
Confidence 1111122222222 1234577999999877777766666655443
No 155
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=90.13 E-value=0.64 Score=55.37 Aligned_cols=99 Identities=25% Similarity=0.263 Sum_probs=61.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCC---C
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITID---D 266 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIp---d 266 (735)
.+.+|||--...+.-+.+.+.|.... -+.......-| ..|=+-+-+...+| -|=+|||.|.+|-+|. +
T Consensus 428 ~gqPvLvgT~sie~SE~ls~~L~~~~---i~h~VLNAk~h----~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~ 498 (822)
T COG0653 428 KGQPVLVGTVSIEKSELLSKLLRKAG---IPHNVLNAKNH----AREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGN 498 (822)
T ss_pred cCCCEEEcCcceecchhHHHHHHhcC---CCceeeccccH----HHHHHHHhhcCCCC--ccccccccccCCcccccCCC
Confidence 46689999999999888888887431 01112223344 33333333333333 4779999999998875 3
Q ss_pred e--------EEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEE
Q 047202 267 V--------VYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GIC 315 (735)
Q Consensus 267 V--------~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c 315 (735)
+ -|||=+.+.-..+.| .|=+|||||.+. |..
T Consensus 499 ~~~V~~lGGL~VIgTERhESRRID------------------nQLRGRsGRQGDpG~S 538 (822)
T COG0653 499 PEFVMELGGLHVIGTERHESRRID------------------NQLRGRAGRQGDPGSS 538 (822)
T ss_pred HHHHHHhCCcEEEecccchhhHHH------------------HHhhcccccCCCcchh
Confidence 2 256655544444444 388999999874 753
No 156
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=89.44 E-value=0.31 Score=44.27 Aligned_cols=45 Identities=38% Similarity=0.327 Sum_probs=26.0
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV 61 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~ 61 (735)
....++.|||||+|.=.-....... .+.... ..+..++++||||+
T Consensus 100 ~~~~~~~iiiDE~h~~~~~~~~~~~-~~~~~~-----~~~~~~~i~~saTp 144 (144)
T cd00046 100 SLKKLDLLILDEAHRLLNQGFGLLG-LKILLK-----LPKDRQVLLLSATP 144 (144)
T ss_pred chhcCCEEEEeCHHHHhhcchHHHH-HHHHhh-----CCccceEEEEeccC
Confidence 3567999999999952221111111 111111 12567899999996
No 157
>PRK05580 primosome assembly protein PriA; Validated
Probab=88.85 E-value=0.76 Score=54.90 Aligned_cols=74 Identities=19% Similarity=0.285 Sum_probs=60.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEE
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYV 270 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~V 270 (735)
++.+||.+|..+-+.++.+.+.... +..+..+||+++..++.+++.....|..+|||+|.-+-. +.+.++..|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~li 262 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLI 262 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEE
Confidence 5689999999999999999887643 245899999999999999988888888899999985542 556777766
Q ss_pred E
Q 047202 271 F 271 (735)
Q Consensus 271 I 271 (735)
|
T Consensus 263 V 263 (679)
T PRK05580 263 I 263 (679)
T ss_pred E
Confidence 6
No 158
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=87.11 E-value=1.8 Score=49.84 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=60.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
.++.+||-+|..+-+.++.+.|.... +..+..+||+++..++.+++.....|..+|||.|.-|=- ..+.++..
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~l 96 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRF------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGL 96 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHh------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCE
Confidence 35689999999999999999887653 234788999999999999988888888899999976532 45667776
Q ss_pred EE
Q 047202 270 VF 271 (735)
Q Consensus 270 VI 271 (735)
||
T Consensus 97 II 98 (505)
T TIGR00595 97 II 98 (505)
T ss_pred EE
Confidence 66
No 159
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=86.72 E-value=4.1 Score=50.26 Aligned_cols=117 Identities=17% Similarity=0.139 Sum_probs=70.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhh-----------------ccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASY-----------------RFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVI 252 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~-----------------~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVI 252 (735)
.+.+.+||+|.+..+..++..+..-. ....+-+..|- |-+++..+|.-+-.-+..|..+|.
T Consensus 1358 ~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~ 1435 (1674)
T KOG0951|consen 1358 NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVC 1435 (1674)
T ss_pred CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEE
Confidence 46678999999998876554332110 00001112233 899999999888777888888876
Q ss_pred EeccccccCCC-CCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEcee
Q 047202 253 IATNIAETSIT-IDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYT 320 (735)
Q Consensus 253 laTnIAEtsit-IpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t 320 (735)
|..-= =.|+- +-+.++|-+ +..||-..+.. ..-+-|...|+.|+|.| .|.|.-+..
T Consensus 1436 v~s~~-~~~~~~~~~lVvvmg-----t~~ydg~e~~~----~~y~i~~ll~m~G~a~~--~~k~vi~~~ 1492 (1674)
T KOG0951|consen 1436 VMSRD-CYGTKLKAHLVVVMG-----TQYYDGKEHSY----EDYPIAELLQMVGLASG--AGKCVIMCH 1492 (1674)
T ss_pred EEEcc-cccccccceEEEEec-----ceeeccccccc----ccCchhHHHHHhhhhcC--CccEEEEec
Confidence 64332 22322 224444444 34466444321 33456889999999988 677776665
No 160
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=86.58 E-value=5 Score=47.27 Aligned_cols=88 Identities=23% Similarity=0.268 Sum_probs=71.5
Q ss_pred CcEEEEecCCCCHHHHHHhcCCCCCC--ccEEEEeccccccCCCCCCeEEEE--eCCcccceeccCCCCcccceeEeehH
Q 047202 222 SDWLLALHSSVASVDQKKVFLRPPEK--IRKVIIATNIAETSITIDDVVYVF--DCGRHKENRYNSQKKLSSMVEDWISQ 297 (735)
Q Consensus 222 ~~~i~~LHs~l~~~eq~~vf~~~~~g--~rkVIlaTnIAEtsitIpdV~~VI--DsG~~k~~~yd~~~~~~~l~~~~iSk 297 (735)
++..+-|-|+-+-.+|+.+...|-.. .--.+|||-...-||++-....|| |+. |+|....
T Consensus 801 ~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~d------FNP~dD~---------- 864 (941)
T KOG0389|consen 801 GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDID------FNPYDDK---------- 864 (941)
T ss_pred CceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecC------CCCcccc----------
Confidence 57789999999999999999888543 334688999999999988777776 543 7776653
Q ss_pred hhHHHhcCcCCCCCCcEEEEceehhhHhh
Q 047202 298 ANARQRRGRAGRVKPGICYSLYTRHRYEK 326 (735)
Q Consensus 298 asa~QR~GRAGR~~~G~c~rL~t~~~~~~ 326 (735)
+|.-|+-|.|-++|=..|||.|+..-+.
T Consensus 865 -QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 865 -QAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred -hhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 4778999999999999999999987654
No 161
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=85.35 E-value=4.1 Score=45.47 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=75.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCC--ccEEEEeccccccCCCCCCe
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEK--IRKVIIATNIAETSITIDDV 267 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g--~rkVIlaTnIAEtsitIpdV 267 (735)
++-..|||..-..-.+.+...+... ++..+-+-|+.++.+|+..-+.|... .+--||+-..|.+|+|+-.-
T Consensus 491 ~~~KflVFaHH~~vLd~Iq~~~~~r-------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa 563 (689)
T KOG1000|consen 491 PPRKFLVFAHHQIVLDTIQVEVNKR-------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAA 563 (689)
T ss_pred CCceEEEEehhHHHHHHHHHHHHHc-------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeecc
Confidence 4568999998877666666666543 45577889999999999888877543 34458888999999999988
Q ss_pred EEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehh
Q 047202 268 VYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRH 322 (735)
Q Consensus 268 ~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~ 322 (735)
..||=. +-.|+|..- -+|.-|+-|.|-+.. ++.| |.-+.
T Consensus 564 ~~VVFa----EL~wnPgvL-----------lQAEDRaHRiGQkssV~v~y-lvAKg 603 (689)
T KOG1000|consen 564 SVVVFA----ELHWNPGVL-----------LQAEDRAHRIGQKSSVFVQY-LVAKG 603 (689)
T ss_pred ceEEEE----EecCCCceE-----------EechhhhhhccccceeeEEE-EEecC
Confidence 888832 333555332 135567777777766 4444 44443
No 162
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=84.00 E-value=4.4 Score=49.81 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=87.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCC--ccEEEEeccccccCCCCCCeEEE
Q 047202 193 AILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEK--IRKVIIATNIAETSITIDDVVYV 270 (735)
Q Consensus 193 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g--~rkVIlaTnIAEtsitIpdV~~V 270 (735)
.+|+|.+-..-+..+.+.+... +...+.++|+++..+|+...+.|..+ ..-.+++|-.+.+|++.-.-..|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~-------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~v 785 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL-------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTV 785 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceE
Confidence 6999999888887777777654 24589999999999999988887664 56678888999999999888888
Q ss_pred EeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhh
Q 047202 271 FDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEK 326 (735)
Q Consensus 271 IDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~ 326 (735)
|- ||+.-+ +.=..+|..|+-|.|+.++=..||+.++...+.
T Consensus 786 i~--------~d~~wn-------p~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe 826 (866)
T COG0553 786 IL--------FDPWWN-------PAVELQAIDRAHRIGQKRPVKVYRLITRGTIEE 826 (866)
T ss_pred EE--------eccccC-------hHHHHHHHHHHHHhcCcceeEEEEeecCCcHHH
Confidence 85 554322 222445677888889999999999999987655
No 163
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=83.83 E-value=1.3 Score=52.65 Aligned_cols=75 Identities=23% Similarity=0.354 Sum_probs=61.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
.+..+||-+|-.+...++.+++.... +..|..+||+|++.++.+.+.+...|.-+||+-|=-|=- .-+++...
T Consensus 244 ~GkqvLvLVPEI~Ltpq~~~rf~~rF------g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-~Pf~~LGL 316 (730)
T COG1198 244 QGKQVLVLVPEIALTPQLLARFKARF------GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-LPFKNLGL 316 (730)
T ss_pred cCCEEEEEeccccchHHHHHHHHHHh------CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-CchhhccE
Confidence 45699999999999999999998765 345899999999999999999999999999998765522 23567766
Q ss_pred EE
Q 047202 270 VF 271 (735)
Q Consensus 270 VI 271 (735)
+|
T Consensus 317 II 318 (730)
T COG1198 317 II 318 (730)
T ss_pred EE
Confidence 66
No 164
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=83.79 E-value=6.9 Score=46.72 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=73.3
Q ss_pred EEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCC--CCCccEE-EEeccccccCCCCCCeEEEE
Q 047202 195 LVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRP--PEKIRKV-IIATNIAETSITIDDVVYVF 271 (735)
Q Consensus 195 LVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~--~~g~rkV-IlaTnIAEtsitIpdV~~VI 271 (735)
.|.+.-+..+..+.+.+..- . ++.++.|||.++..+|+++.+.| |.+.-+| ++||-...-||+.-+-.-||
T Consensus 598 ~v~Isny~~tldl~e~~~~~---~---g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli 671 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRW---R---GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI 671 (776)
T ss_pred EEEeccHHHHHHHHHHHHhh---c---CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE
Confidence 33445555554444444322 2 67899999999999999997776 3444355 56788888999987776666
Q ss_pred eCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHh
Q 047202 272 DCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYE 325 (735)
Q Consensus 272 DsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~ 325 (735)
= ||+.-+ |.---+|.-|+=|-|-.++-+.|||.+...-+
T Consensus 672 l--------~D~dWN-------Pa~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 672 L--------FDPDWN-------PAVDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred E--------eCCCCC-------chhHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 2 554433 22234555677777777889999999976543
No 165
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=80.72 E-value=25 Score=43.10 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=91.0
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
+.+.+..+. ..+|.+|||.|+++.++.+.+.|... ...++.-..+.+. .++.+.|..+...|+++|..
T Consensus 636 ~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-------~~~~l~Qg~~~~~---~~l~~~F~~~~~~vLlG~~s 703 (820)
T PRK07246 636 IAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-------QVSHLAQEKNGTA---YNIKKRFDRGEQQILLGLGS 703 (820)
T ss_pred HHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-------CCcEEEeCCCccH---HHHHHHHHcCCCeEEEecch
Confidence 444444444 25799999999999999998888532 1223222222333 23444555677789999999
Q ss_pred cccCCCCC--CeEEEEeCCcccceeccCC----------CCcccceeEeehH--hhHHHhcCcCCCCCC--cEEEE----
Q 047202 258 AETSITID--DVVYVFDCGRHKENRYNSQ----------KKLSSMVEDWISQ--ANARQRRGRAGRVKP--GICYS---- 317 (735)
Q Consensus 258 AEtsitIp--dV~~VIDsG~~k~~~yd~~----------~~~~~l~~~~iSk--asa~QR~GRAGR~~~--G~c~r---- 317 (735)
.=-||++| +...||=.+++-..-.||- .+-+.....-+.+ -..+|=.||.=|... |+.+-
T Consensus 704 FwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 704 FWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred hhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 99999997 3555554666643222221 1112222233333 357899999988764 87663
Q ss_pred ceehhhHhhhcCCCCCCc---ccccchHHHHHH
Q 047202 318 LYTRHRYEKLMRPYQVPE---MQRMPLVELCLQ 347 (735)
Q Consensus 318 L~t~~~~~~~~~~~~~PE---i~r~~L~~l~L~ 347 (735)
+.++ .|.+.+. ...|+ +...++.++.-.
T Consensus 784 ~~~k-~Yg~~~l-~sLP~~~~~~~~~~~~~~~~ 814 (820)
T PRK07246 784 ILTK-SYGKQIL-ASLAEEFLISQQNFSDVLVE 814 (820)
T ss_pred cccc-HHHHHHH-HhCCCCCccccCCHHHHHHH
Confidence 3333 2544332 23443 455677776433
No 166
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=80.13 E-value=3.6 Score=46.44 Aligned_cols=56 Identities=20% Similarity=0.263 Sum_probs=48.5
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc
Q 047202 194 ILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN 256 (735)
Q Consensus 194 iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn 256 (735)
-|||-|+++=+.++.+.|.....+ .++.+..+-|||+..-|++++...| .|||||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~---t~i~v~si~GGLavqKQqRlL~~~p----~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEK---TQIRVASITGGLAVQKQQRLLNQRP----DIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccc---cCeEEEEeechhHHHHHHHHHhcCC----CEEEecc
Confidence 699999999999999998876543 3688999999999999999998744 5999997
No 167
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=77.69 E-value=16 Score=42.75 Aligned_cols=115 Identities=21% Similarity=0.226 Sum_probs=83.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCC-CccEEEEeccccccCCCCCCeE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPE-KIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~-g~rkVIlaTnIAEtsitIpdV~ 268 (735)
++..+|+|.--..-|+.+.+.|... ++..+-|.|+....+|+.+...+.. ..--.+|||-...-||++-..+
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr-------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAAD 1115 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYR-------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAAD 1115 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhh-------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccc
Confidence 4557888876444444444444322 5778999999999999988776654 3445678999999999999888
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhh
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEK 326 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~ 326 (735)
.||= ||+.-+ |.--.+|.-|+-|-|-++.=.+|||.++..-+.
T Consensus 1116 TViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEE 1158 (1185)
T KOG0388|consen 1116 TVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLITRGTVEE 1158 (1185)
T ss_pred eEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeecccccHHH
Confidence 8883 444332 223456778999999999999999999987665
No 168
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=77.48 E-value=10 Score=43.83 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=63.0
Q ss_pred HHHHHHHHHc-cCCCCc-EEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEec
Q 047202 178 LEDLVCHVDE-TCGEGA-ILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIAT 255 (735)
Q Consensus 178 i~~ll~~i~~-~~~~g~-iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaT 255 (735)
...++.++.. ...... .||+.|+++-+.++.+.+........ ++.+..++|+.+...|...+.. | ..|||||
T Consensus 84 ~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~--~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaT 157 (513)
T COG0513 84 LLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLG--GLRVAVVYGGVSIRKQIEALKR---G-VDIVVAT 157 (513)
T ss_pred HHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcC--CccEEEEECCCCHHHHHHHHhc---C-CCEEEEC
Confidence 4455666653 222222 99999999988888887765432211 4679999999999999988876 4 6899999
Q ss_pred c-----cccc-CCCCCCeEEEE
Q 047202 256 N-----IAET-SITIDDVVYVF 271 (735)
Q Consensus 256 n-----IAEt-sitIpdV~~VI 271 (735)
+ ..+. .+....|.++|
T Consensus 158 PGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 158 PGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred ccHHHHHHHcCCcchhhcCEEE
Confidence 7 3343 47888888877
No 169
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=75.16 E-value=5.9 Score=48.12 Aligned_cols=67 Identities=13% Similarity=0.221 Sum_probs=53.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
.++.+++-+|+..=+.+++++|.......+.....+. +||.|+..+++.+.++..+|.-+|+|+|+-
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 4578899999999999999998765433332223344 999999999999999999999999999864
No 170
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=72.55 E-value=10 Score=45.57 Aligned_cols=79 Identities=10% Similarity=0.151 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-ccccCCCCCCeE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-IAETSITIDDVV 268 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-IAEtsitIpdV~ 268 (735)
.+..+||-.|+.+=+.+.++.+..... ..++.+..+||+++..+++.++.....|...|||+|. .....+.+.++.
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~---~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~ 385 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLE---PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLG 385 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHh---hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccc
Confidence 345789999999988888887765431 1246799999999999999998888888899999997 334456677888
Q ss_pred EEE
Q 047202 269 YVF 271 (735)
Q Consensus 269 ~VI 271 (735)
+||
T Consensus 386 lvV 388 (681)
T PRK10917 386 LVI 388 (681)
T ss_pred eEE
Confidence 777
No 171
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=72.54 E-value=2 Score=45.33 Aligned_cols=38 Identities=26% Similarity=0.175 Sum_probs=22.8
Q ss_pred CccEEEEccccc-CCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC
Q 047202 14 GVTHVIVDEVHE-RSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV 61 (735)
Q Consensus 14 ~~s~vIiDEvHE-R~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~ 61 (735)
+++.|||||+|. |+..+-..-.+. . + ...+.++||||.
T Consensus 134 ~~~~vIvDEaH~~k~~~s~~~~~l~-~-l--------~~~~~~lLSgTP 172 (299)
T PF00176_consen 134 KWDRVIVDEAHRLKNKDSKRYKALR-K-L--------RARYRWLLSGTP 172 (299)
T ss_dssp EEEEEEETTGGGGTTTTSHHHHHHH-C-C--------CECEEEEE-SS-
T ss_pred cceeEEEeccccccccccccccccc-c-c--------ccceEEeecccc
Confidence 488999999996 444443332222 1 2 135788999997
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=72.53 E-value=5.3 Score=48.45 Aligned_cols=40 Identities=20% Similarity=0.381 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHHcc-------CCCCcEEEEcCCHHHHHHHHHHHHh
Q 047202 174 DYDLLEDLVCHVDET-------CGEGAILVFLPGVAEIHILLDRLAA 213 (735)
Q Consensus 174 ~~~li~~ll~~i~~~-------~~~g~iLVFlpg~~eI~~l~~~L~~ 213 (735)
..+.+.++|..|... .++|.||||+.....+.++.+.|..
T Consensus 271 Kw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 271 KWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 345666777776554 4567899999998888887776643
No 173
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=69.77 E-value=30 Score=34.02 Aligned_cols=85 Identities=9% Similarity=0.099 Sum_probs=56.9
Q ss_pred HHHHHHHcc--CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 180 DLVCHVDET--CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 180 ~ll~~i~~~--~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
.++..+... ...+.++|..|+.+-+.+..+.+..... ..+..+..+||+.+..+..+.+. +...|+++|+-
T Consensus 56 ~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~ 128 (203)
T cd00268 56 PILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGK---HTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPG 128 (203)
T ss_pred HHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhc---cCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChH
Confidence 444555443 3456799999999988888777654321 23567888999998877766664 33469999952
Q ss_pred -----c-ccCCCCCCeEEEE
Q 047202 258 -----A-ETSITIDDVVYVF 271 (735)
Q Consensus 258 -----A-EtsitIpdV~~VI 271 (735)
. .....++++.++|
T Consensus 129 ~l~~~l~~~~~~~~~l~~lI 148 (203)
T cd00268 129 RLLDLLERGKLDLSKVKYLV 148 (203)
T ss_pred HHHHHHHcCCCChhhCCEEE
Confidence 2 2335667777776
No 174
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=69.67 E-value=26 Score=41.61 Aligned_cols=85 Identities=12% Similarity=0.135 Sum_probs=58.5
Q ss_pred HHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc----
Q 047202 181 LVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN---- 256 (735)
Q Consensus 181 ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn---- 256 (735)
++..+........+||.+|+++=+.++++.+...... ..++.+..+||+.+.+.|.+.+..- ..|||+|+
T Consensus 64 ll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~--~~~i~v~~~~gG~~~~~q~~~l~~~----~~IVVgTPgrl~ 137 (629)
T PRK11634 64 LLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKH--MRGVNVVALYGGQRYDVQLRALRQG----PQIVVGTPGRLL 137 (629)
T ss_pred HHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhh--cCCceEEEEECCcCHHHHHHHhcCC----CCEEEECHHHHH
Confidence 3444443334558999999999888887776543211 1257799999999998888777532 36999995
Q ss_pred --ccccCCCCCCeEEEE
Q 047202 257 --IAETSITIDDVVYVF 271 (735)
Q Consensus 257 --IAEtsitIpdV~~VI 271 (735)
+....+.+.++.+||
T Consensus 138 d~l~r~~l~l~~l~~lV 154 (629)
T PRK11634 138 DHLKRGTLDLSKLSGLV 154 (629)
T ss_pred HHHHcCCcchhhceEEE
Confidence 223346788888777
No 175
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=68.53 E-value=4.1 Score=49.00 Aligned_cols=55 Identities=31% Similarity=0.355 Sum_probs=38.1
Q ss_pred CCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhC
Q 047202 9 DKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFG 71 (735)
Q Consensus 9 d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~ 71 (735)
..+..++..||.||||-=+-.-|-++.. .-++- -++-.+..|||+ |++.|..|.+
T Consensus 627 q~~cerIRyiIfDEVH~iG~~ed~l~~E-qll~l-------i~CP~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 627 QKFCERIRYIIFDEVHLIGNEEDGLLWE-QLLLL-------IPCPFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred hhhhhcceEEEechhhhccccccchHHH-HHHHh-------cCCCeeEEecccCCHHHHHHHHH
Confidence 3467899999999999654433333221 11111 247799999999 8999999886
No 176
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=68.36 E-value=44 Score=37.62 Aligned_cols=121 Identities=12% Similarity=0.144 Sum_probs=85.1
Q ss_pred cCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc--cCCCCC
Q 047202 188 TCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE--TSITID 265 (735)
Q Consensus 188 ~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE--tsitIp 265 (735)
....+.+|||+|++-|--.+.+.|... +.....+|---+..+..++=..|-.|.++|+|-|-=+- .=-.|-
T Consensus 297 ~~~~~~~LIfIPSYfDfVRlRN~lk~~-------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ir 369 (442)
T PF06862_consen 297 DSKMSGTLIFIPSYFDFVRLRNYLKKE-------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIR 369 (442)
T ss_pred ccCCCcEEEEecchhhhHHHHHHHHhc-------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceec
Confidence 446789999999999999999988743 45677788777788877777788899999999985443 346789
Q ss_pred CeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhh
Q 047202 266 DVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEK 326 (735)
Q Consensus 266 dV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~ 326 (735)
||+.||=.|.+....|.++-- . +.... .+..+=...+.|..|||+.+.-.
T Consensus 370 Gi~~viFY~~P~~p~fY~El~-n-~~~~~---------~~~~~~~~~~~~~~lysk~D~~~ 419 (442)
T PF06862_consen 370 GIRHVIFYGPPENPQFYSELL-N-MLDES---------SGGEVDAADATVTVLYSKYDALR 419 (442)
T ss_pred CCcEEEEECCCCChhHHHHHH-h-hhccc---------ccccccccCceEEEEecHhHHHH
Confidence 999999888777666554321 0 00000 00112234589999999865433
No 177
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=67.99 E-value=5.4 Score=42.25 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=22.7
Q ss_pred EEEEcccccC-CccH--------HHHHHHHHHHHHhhccCCCCCcEEEEecCCC
Q 047202 17 HVIVDEVHER-SLLG--------DFLLIVLKDLLEKQSAHDTPKLKVILMSATV 61 (735)
Q Consensus 17 ~vIiDEvHER-~~~t--------D~LL~~lk~ll~~r~~~~~~~lklIlmSAT~ 61 (735)
+||+||+|+= +..+ ......|.+.+ |+-|+|.+|||-
T Consensus 175 vivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L--------P~ARvvY~SATg 220 (303)
T PF13872_consen 175 VIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL--------PNARVVYASATG 220 (303)
T ss_pred eEEeccchhcCCCCccCccccHHHHHHHHHHHhC--------CCCcEEEecccc
Confidence 8999999962 2221 11211222222 677899999996
No 178
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=66.92 E-value=18 Score=40.74 Aligned_cols=87 Identities=18% Similarity=0.318 Sum_probs=58.5
Q ss_pred HHHHHHHHHccC----CCCcEEE-EcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEE
Q 047202 178 LEDLVCHVDETC----GEGAILV-FLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVI 252 (735)
Q Consensus 178 i~~ll~~i~~~~----~~g~iLV-Flpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVI 252 (735)
+...+.||.+.. ..|+|+| .+|+++-..++....+ .|+...++.+..+|++.+..+|-+.++.- --||
T Consensus 278 i~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaK---kf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g----~Eiv 350 (731)
T KOG0339|consen 278 IWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAK---KFGKAYGLRVVAVYGGGSKWEQSKELKEG----AEIV 350 (731)
T ss_pred HHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHH---HhhhhccceEEEeecCCcHHHHHHhhhcC----CeEE
Confidence 444556665432 4578855 5688886665544332 23333468899999999999999998732 3699
Q ss_pred Eecc------ccccCCCCCCeEEEE
Q 047202 253 IATN------IAETSITIDDVVYVF 271 (735)
Q Consensus 253 laTn------IAEtsitIpdV~~VI 271 (735)
|||+ +---++++-.|.|.|
T Consensus 351 VaTPgRlid~VkmKatn~~rvS~LV 375 (731)
T KOG0339|consen 351 VATPGRLIDMVKMKATNLSRVSYLV 375 (731)
T ss_pred EechHHHHHHHHhhcccceeeeEEE
Confidence 9997 223467788888766
No 179
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=65.45 E-value=9.3 Score=45.27 Aligned_cols=53 Identities=11% Similarity=0.307 Sum_probs=35.3
Q ss_pred CCCccEEEEccccc---CCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC--ChHHHHhhhCC
Q 047202 12 LTGVTHVIVDEVHE---RSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV--DSNLFSRYFGD 72 (735)
Q Consensus 12 L~~~s~vIiDEvHE---R~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~--~~~~f~~yF~~ 72 (735)
|+.++++|+||+|. ....+-++ +.++.... ..-||+.++||+ +.+...+|-.+
T Consensus 177 ls~fs~iv~DE~Hra~kn~~Y~~Vm----r~~l~~k~----~~~qILgLTASpG~~~~~v~~~I~~ 234 (746)
T KOG0354|consen 177 LSDFSLIVFDECHRTSKNHPYNNIM----REYLDLKN----QGNQILGLTASPGSKLEQVQNVIDN 234 (746)
T ss_pred cceEEEEEEcccccccccccHHHHH----HHHHHhhh----ccccEEEEecCCCccHHHHHHHHHh
Confidence 78899999999995 33444443 33333221 223999999999 66666777654
No 180
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=64.89 E-value=16 Score=45.17 Aligned_cols=78 Identities=9% Similarity=0.162 Sum_probs=60.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-ccccCCCCCCeEE
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-IAETSITIDDVVY 269 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-IAEtsitIpdV~~ 269 (735)
...++|.+|+..=+.+..+.+..... .-+..+..|+|..+..+++++.+....|...|||+|. +....+.+.++.+
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~---~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~l 576 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFA---NFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGL 576 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhc---cCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCE
Confidence 45799999999988888887765421 1246788999999999999988887788889999998 3334567778887
Q ss_pred EE
Q 047202 270 VF 271 (735)
Q Consensus 270 VI 271 (735)
||
T Consensus 577 lV 578 (926)
T TIGR00580 577 LI 578 (926)
T ss_pred EE
Confidence 76
No 181
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=62.18 E-value=32 Score=39.01 Aligned_cols=86 Identities=16% Similarity=0.120 Sum_probs=58.6
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc---
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN--- 256 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn--- 256 (735)
.++..+........+||.+|+.+=+.++.+.+...... ..+..+..++|+.+...|...+.. ...|||+|+
T Consensus 61 pil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~--~~~~~v~~~~Gg~~~~~~~~~l~~----~~~IvV~Tp~rl 134 (460)
T PRK11776 61 GLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARF--IPNIKVLTLCGGVPMGPQIDSLEH----GAHIIVGTPGRI 134 (460)
T ss_pred HHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhh--CCCcEEEEEECCCChHHHHHHhcC----CCCEEEEChHHH
Confidence 34444433323346899999999888887776543211 124679999999999888777753 346999994
Q ss_pred --cc-ccCCCCCCeEEEE
Q 047202 257 --IA-ETSITIDDVVYVF 271 (735)
Q Consensus 257 --IA-EtsitIpdV~~VI 271 (735)
.. ...+.+.++.+||
T Consensus 135 ~~~l~~~~~~l~~l~~lV 152 (460)
T PRK11776 135 LDHLRKGTLDLDALNTLV 152 (460)
T ss_pred HHHHHcCCccHHHCCEEE
Confidence 22 3456788888877
No 182
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=62.07 E-value=41 Score=37.82 Aligned_cols=74 Identities=18% Similarity=0.215 Sum_probs=53.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc------ccccCCCC
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN------IAETSITI 264 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn------IAEtsitI 264 (735)
++.+||..|+.+=+.++.+.+..... ..+..+..++|+.+..+|..++.. ...|||+|+ +....++.
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~---~~~~~v~~~~gg~~~~~~~~~l~~----~~~IlV~Tp~rl~~~~~~~~~~~ 145 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAK---HTHLDIATITGGVAYMNHAEVFSE----NQDIVVATPGRLLQYIKEENFDC 145 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHc---cCCcEEEEEECCCCHHHHHHHhcC----CCCEEEEChHHHHHHHHcCCcCc
Confidence 45799999999988887776654322 124678999999999988887753 236999996 22234566
Q ss_pred CCeEEEE
Q 047202 265 DDVVYVF 271 (735)
Q Consensus 265 pdV~~VI 271 (735)
.+|.+||
T Consensus 146 ~~v~~lV 152 (434)
T PRK11192 146 RAVETLI 152 (434)
T ss_pred ccCCEEE
Confidence 7777666
No 183
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=60.28 E-value=13 Score=47.35 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=48.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
++.+||.+|+.+=+.++.+.+.......+-....+..+||+++..+|...++....|.-.|||+|+-
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 5689999999999988888776543211111122456899999999887776666676789999973
No 184
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=60.23 E-value=55 Score=37.55 Aligned_cols=72 Identities=19% Similarity=0.171 Sum_probs=55.2
Q ss_pred cEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-----cc-ccCCCCCC
Q 047202 193 AILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-----IA-ETSITIDD 266 (735)
Q Consensus 193 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-----IA-EtsitIpd 266 (735)
.+||-.|+++=..++.+..... .....+...+++|+.|...|.+-.+.. ..|++||+ .. +-++..-+
T Consensus 167 ~vLVL~PTRELA~QV~~~~~~~---~~~~~~~~~cvyGG~~~~~Q~~~l~~g----vdiviaTPGRl~d~le~g~~~l~~ 239 (519)
T KOG0331|consen 167 IVLVLAPTRELAVQVQAEAREF---GKSLRLRSTCVYGGAPKGPQLRDLERG----VDVVIATPGRLIDLLEEGSLNLSR 239 (519)
T ss_pred eEEEEcCcHHHHHHHHHHHHHH---cCCCCccEEEEeCCCCccHHHHHHhcC----CcEEEeCChHHHHHHHcCCccccc
Confidence 5899999999888877766543 223346789999999999998877642 47999997 33 45566789
Q ss_pred eEEEE
Q 047202 267 VVYVF 271 (735)
Q Consensus 267 V~~VI 271 (735)
|+|||
T Consensus 240 v~ylV 244 (519)
T KOG0331|consen 240 VTYLV 244 (519)
T ss_pred eeEEE
Confidence 99998
No 185
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=59.33 E-value=27 Score=41.55 Aligned_cols=79 Identities=10% Similarity=0.086 Sum_probs=59.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc-cCCCCCCeE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE-TSITIDDVV 268 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE-tsitIpdV~ 268 (735)
.+..+++-.|+.+=+.+.++.+..... ..++.+..+||+++..+++.+++....|...||++|...= .++.+.++.
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~---~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~ 359 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLA---PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLA 359 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhc---ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccc
Confidence 355889999999888888777765421 1247799999999999998888888888889999997432 234556777
Q ss_pred EEE
Q 047202 269 YVF 271 (735)
Q Consensus 269 ~VI 271 (735)
+||
T Consensus 360 lvV 362 (630)
T TIGR00643 360 LVI 362 (630)
T ss_pred eEE
Confidence 666
No 186
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=54.25 E-value=64 Score=30.36 Aligned_cols=69 Identities=17% Similarity=0.315 Sum_probs=48.6
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHH-HHHHhcCCCCCCccEEEEecc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASV-DQKKVFLRPPEKIRKVIIATN 256 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~-eq~~vf~~~~~g~rkVIlaTn 256 (735)
.++..+.+. ..+.+++.+|..+-++...+.+...... .+..+..+|++.+.. ++...+ .+...|+++|.
T Consensus 34 ~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilv~T~ 103 (169)
T PF00270_consen 34 PALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSN---TNVRVVLLHGGQSISEDQREVL----SNQADILVTTP 103 (169)
T ss_dssp HHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTT---TTSSEEEESTTSCHHHHHHHHH----HTTSSEEEEEH
T ss_pred HHHhhhccC-CCceEEEEeecccccccccccccccccc---cccccccccccccccccccccc----cccccccccCc
Confidence 344455554 5679999999999999999888665322 345688899999865 444444 34457888885
No 187
>PRK10689 transcription-repair coupling factor; Provisional
Probab=52.68 E-value=24 Score=44.75 Aligned_cols=78 Identities=12% Similarity=0.202 Sum_probs=58.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-ccccCCCCCCeEE
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-IAETSITIDDVVY 269 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-IAEtsitIpdV~~ 269 (735)
++.+||-+|+.+=+.+..+.+.... . ..++.+..+++..+..+|.++++....|...|||+|. .....+...++.+
T Consensus 649 g~qvlvLvPT~eLA~Q~~~~f~~~~--~-~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~l 725 (1147)
T PRK10689 649 HKQVAVLVPTTLLAQQHYDNFRDRF--A-NWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGL 725 (1147)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhh--c-cCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCE
Confidence 5579999999998888887776532 1 1146688899999999999998877777788999996 3334456677776
Q ss_pred EE
Q 047202 270 VF 271 (735)
Q Consensus 270 VI 271 (735)
||
T Consensus 726 LV 727 (1147)
T PRK10689 726 LI 727 (1147)
T ss_pred EE
Confidence 66
No 188
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=49.69 E-value=28 Score=41.20 Aligned_cols=119 Identities=21% Similarity=0.320 Sum_probs=78.4
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhh---hccCCC--------CCcEEEEecCCCCHHHHHHhcCCC--CCCcc-EEEEecc
Q 047202 191 EGAILVFLPGVAEIHILLDRLAAS---YRFGGP--------SSDWLLALHSSVASVDQKKVFLRP--PEKIR-KVIIATN 256 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~---~~~~~~--------~~~~i~~LHs~l~~~eq~~vf~~~--~~g~r-kVIlaTn 256 (735)
+..||||-........+.+.|... +.-++. .....+-|.|.-+..++++....+ +.|.. -+.|||-
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 458999987777766655555432 111110 012345788888899999987765 34544 7889999
Q ss_pred ccccCCCC-CCeEEE-EeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhh
Q 047202 257 IAETSITI-DDVVYV-FDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEK 326 (735)
Q Consensus 257 IAEtsitI-pdV~~V-IDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~ 326 (735)
..-.||++ ..-++| +|++ |+| +--|+|.=|.-|-|-..|...|||.-....++
T Consensus 799 ag~lGinLIsanr~~ifda~------wnp-----------chdaqavcRvyrYGQ~KpcfvYRlVmD~~lEk 853 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDAC------WNP-----------CHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEK 853 (1387)
T ss_pred cccccceeeccceEEEEEee------cCc-----------cccchhhhhhhhhcCcCceeEEeehhhhhhHH
Confidence 99899874 333444 4654 443 33466667999999999999999987554443
No 189
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=49.22 E-value=72 Score=35.73 Aligned_cols=73 Identities=14% Similarity=0.049 Sum_probs=53.1
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc------ccccCCCCC
Q 047202 192 GAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN------IAETSITID 265 (735)
Q Consensus 192 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn------IAEtsitIp 265 (735)
..+||.+|+++=+.++.+.+..... ..++.+..++|+.+.+.+...+... ..|||+|+ +-...+++.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~---~~~~~v~~~~gg~~~~~~~~~l~~~----~~IlV~TP~~l~~~l~~~~~~l~ 156 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQ---ATGLKLGLAYGGDGYDKQLKVLESG----VDILIGTTGRLIDYAKQNHINLG 156 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhc---cCCceEEEEECCCCHHHHHHHhcCC----CCEEEECHHHHHHHHHcCCcccc
Confidence 4689999999988887766544321 1246788999999888877766532 36999997 224567788
Q ss_pred CeEEEE
Q 047202 266 DVVYVF 271 (735)
Q Consensus 266 dV~~VI 271 (735)
+|.+||
T Consensus 157 ~v~~lV 162 (423)
T PRK04837 157 AIQVVV 162 (423)
T ss_pred cccEEE
Confidence 898888
No 190
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=48.37 E-value=16 Score=45.30 Aligned_cols=50 Identities=24% Similarity=0.205 Sum_probs=28.8
Q ss_pred CCccEEEEccccc-C---CccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhh
Q 047202 13 TGVTHVIVDEVHE-R---SLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYF 70 (735)
Q Consensus 13 ~~~s~vIiDEvHE-R---~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF 70 (735)
..++.|||||+|. + +-.+. ....++.+.. + -..++++|||..-....++|
T Consensus 271 ~~wdlvIvDEAH~lk~~~~~~s~-~y~~v~~La~-~------~~~~LLLTATP~q~~~~e~f 324 (956)
T PRK04914 271 AEWDLLVVDEAHHLVWSEEAPSR-EYQVVEQLAE-V------IPGVLLLTATPEQLGQESHF 324 (956)
T ss_pred cCCCEEEEechhhhccCCCCcCH-HHHHHHHHhh-c------cCCEEEEEcCcccCCcHHHH
Confidence 4789999999996 2 11122 1333444332 1 23689999999433333444
No 191
>PRK14701 reverse gyrase; Provisional
Probab=48.04 E-value=29 Score=45.59 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=51.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
+..+||.+|+.+=+.++.+.+....... ..+..+..+||+++..+|.++++....|..+||++|+-
T Consensus 122 g~~aLVl~PTreLa~Qi~~~l~~l~~~~-~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 122 GKKCYIILPTTLLVKQTVEKIESFCEKA-NLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhhc-CCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4589999999998888888876532211 12456899999999999988877777777889999973
No 192
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=47.53 E-value=56 Score=37.06 Aligned_cols=73 Identities=16% Similarity=0.141 Sum_probs=53.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc-------cccCCCC
Q 047202 192 GAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI-------AETSITI 264 (735)
Q Consensus 192 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI-------AEtsitI 264 (735)
-.+||.+|+++=.-+++........|. .+.+...-|||+-..|..++...| .|||||+= ---|.|+
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt---~I~~~L~vGGL~lk~QE~~LRs~P----DIVIATPGRlIDHlrNs~sf~l 325 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFT---DITVGLAVGGLDLKAQEAVLRSRP----DIVIATPGRLIDHLRNSPSFNL 325 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhc---cceeeeeecCccHHHHHHHHhhCC----CEEEecchhHHHHhccCCCccc
Confidence 469999999997666665554444443 355677789999999999998776 49999972 2357777
Q ss_pred CCeEEEE
Q 047202 265 DDVVYVF 271 (735)
Q Consensus 265 pdV~~VI 271 (735)
++|-+.|
T Consensus 326 dsiEVLv 332 (691)
T KOG0338|consen 326 DSIEVLV 332 (691)
T ss_pred cceeEEE
Confidence 7777665
No 193
>PRK06526 transposase; Provisional
Probab=47.10 E-value=41 Score=34.99 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=30.8
Q ss_pred CCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCC
Q 047202 12 LTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGD 72 (735)
Q Consensus 12 L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~ 72 (735)
+.++++|||||+|--..+.+ ...+|-.++..|.+ ...+|+.| -.....+.++|++
T Consensus 157 l~~~dlLIIDD~g~~~~~~~-~~~~L~~li~~r~~----~~s~IitS-n~~~~~w~~~~~d 211 (254)
T PRK06526 157 LGRYPLLIVDEVGYIPFEPE-AANLFFQLVSSRYE----RASLIVTS-NKPFGRWGEVFGD 211 (254)
T ss_pred hccCCEEEEcccccCCCCHH-HHHHHHHHHHHHHh----cCCEEEEc-CCCHHHHHHHcCC
Confidence 56789999999995433222 22334444444431 22355544 4456667777764
No 194
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=46.89 E-value=12 Score=33.89 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=27.4
Q ss_pred cEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCC
Q 047202 16 THVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSAT 60 (735)
Q Consensus 16 s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT 60 (735)
.+|||||+|.-. .+-.+..|+.+.. + +++++|+.+-+
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~-~-----~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLN-E-----SNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTC-S-----CBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHh-C-----CCCeEEEEECh
Confidence 589999999731 3667778887765 2 67899887654
No 195
>PF13173 AAA_14: AAA domain
Probab=45.87 E-value=23 Score=32.35 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=26.2
Q ss_pred CccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC
Q 047202 14 GVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV 61 (735)
Q Consensus 14 ~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~ 61 (735)
+-++|+|||||.=. -....+|.+.... ++.++|+.+-..
T Consensus 61 ~~~~i~iDEiq~~~----~~~~~lk~l~d~~-----~~~~ii~tgS~~ 99 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP----DWEDALKFLVDNG-----PNIKIILTGSSS 99 (128)
T ss_pred CCcEEEEehhhhhc----cHHHHHHHHHHhc-----cCceEEEEccch
Confidence 66899999999632 2445666666543 568888865443
No 196
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=45.79 E-value=16 Score=43.66 Aligned_cols=54 Identities=28% Similarity=0.265 Sum_probs=37.0
Q ss_pred CCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhC
Q 047202 9 DKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFG 71 (735)
Q Consensus 9 d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~ 71 (735)
+-.+..++.+|.||-| |--++|-++ ++.+..- ...|-||+|.|+=-+.|.+||+
T Consensus 371 ~il~~~~glLVcDEGH-rlkN~~s~~--~kaL~~l------~t~rRVLLSGTp~QNdl~EyFn 424 (776)
T KOG0390|consen 371 KILLIRPGLLVCDEGH-RLKNSDSLT--LKALSSL------KTPRRVLLTGTPIQNDLKEYFN 424 (776)
T ss_pred HHhcCCCCeEEECCCC-CccchhhHH--HHHHHhc------CCCceEEeeCCcccccHHHHHH
Confidence 3457889999999999 455666542 2322222 2346777899997778889986
No 197
>PRK07952 DNA replication protein DnaC; Validated
Probab=45.69 E-value=33 Score=35.48 Aligned_cols=56 Identities=13% Similarity=0.364 Sum_probs=40.8
Q ss_pred CCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCC
Q 047202 12 LTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGD 72 (735)
Q Consensus 12 L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~ 72 (735)
+.+++++||||++.-. .+|+-..++-.++..|. .+-+-++++--++.+.+.++|++
T Consensus 160 l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry----~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 160 LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRS----SSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHH----hCCCCEEEeCCCCHHHHHHHhCh
Confidence 6789999999999644 67776677777777664 23455666667778888877764
No 198
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=45.52 E-value=86 Score=38.36 Aligned_cols=118 Identities=21% Similarity=0.215 Sum_probs=76.3
Q ss_pred CCcEEEEc---CCHHHHHHHHHHHHhhhc-cCC-----------CCCcEEEEecCCCCHHHHHHhcCCCC--CC--ccEE
Q 047202 191 EGAILVFL---PGVAEIHILLDRLAASYR-FGG-----------PSSDWLLALHSSVASVDQKKVFLRPP--EK--IRKV 251 (735)
Q Consensus 191 ~g~iLVFl---pg~~eI~~l~~~L~~~~~-~~~-----------~~~~~i~~LHs~l~~~eq~~vf~~~~--~g--~rkV 251 (735)
+...|||- ++..=|+..++....... +.+ ..+.-.+.|-|+.+..+|+++-..|- .+ .|-.
T Consensus 1142 GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~ 1221 (1567)
T KOG1015|consen 1142 GDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLF 1221 (1567)
T ss_pred cceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEE
Confidence 55799995 455555555554432211 000 01223678899999999988766552 23 3567
Q ss_pred EEeccccccCCCCC--CeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHh
Q 047202 252 IIATNIAETSITID--DVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYE 325 (735)
Q Consensus 252 IlaTnIAEtsitIp--dV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~ 325 (735)
+|||-...-||++= +-++++|.. |||.-.+. +.=|+-|-|-+.|-+.||+.-....+
T Consensus 1222 LISTRAGsLGiNLvAANRVIIfDas------WNPSyDtQ-----------SIFRvyRfGQtKPvyiYRfiAqGTmE 1280 (1567)
T KOG1015|consen 1222 LISTRAGSLGINLVAANRVIIFDAS------WNPSYDTQ-----------SIFRVYRFGQTKPVYIYRFIAQGTME 1280 (1567)
T ss_pred EEeeccCccccceeecceEEEEecc------cCCccchH-----------HHHHHHhhcCcCceeehhhhhcccHH
Confidence 99999999999865 334444644 66655443 33488999999999999998765443
No 199
>PRK06620 hypothetical protein; Validated
Probab=45.37 E-value=39 Score=34.18 Aligned_cols=40 Identities=20% Similarity=0.345 Sum_probs=24.6
Q ss_pred CCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC
Q 047202 12 LTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV 61 (735)
Q Consensus 12 L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~ 61 (735)
+...+.++|||+|. .+...|+.++..+... + +.|+++||-
T Consensus 83 ~~~~d~lliDdi~~--~~~~~lf~l~N~~~e~-------g-~~ilits~~ 122 (214)
T PRK06620 83 LEKYNAFIIEDIEN--WQEPALLHIFNIINEK-------Q-KYLLLTSSD 122 (214)
T ss_pred HhcCCEEEEecccc--chHHHHHHHHHHHHhc-------C-CEEEEEcCC
Confidence 34668999999993 3334566665555432 2 356666664
No 200
>PRK06893 DNA replication initiation factor; Validated
Probab=44.91 E-value=44 Score=34.06 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=29.4
Q ss_pred CCCccEEEEcccccCCccH---HHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHH
Q 047202 12 LTGVTHVIVDEVHERSLLG---DFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLF 66 (735)
Q Consensus 12 L~~~s~vIiDEvHER~~~t---D~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f 66 (735)
+.+++.+||||+|.-.-+. ..++.++..+... +-.+|+++++..+..+
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~-------~~~illits~~~p~~l 139 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ-------GKTLLLISADCSPHAL 139 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc-------CCcEEEEeCCCChHHc
Confidence 5678999999999633222 2455555543321 2357788888755544
No 201
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=44.18 E-value=80 Score=35.83 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=52.8
Q ss_pred cEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc------ccccCCCCCC
Q 047202 193 AILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN------IAETSITIDD 266 (735)
Q Consensus 193 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn------IAEtsitIpd 266 (735)
.+||.+|+++=+.++.+.+..... ..++.+..++|+.+..+|...+. +...|||+|+ .....+.+.+
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~l~----~~~~IiV~TP~rL~~~~~~~~~~l~~ 149 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSK---YLNIRSLVVFGGVSINPQMMKLR----GGVDVLVATPGRLLDLEHQNAVKLDQ 149 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhc---cCCCEEEEEECCcCHHHHHHHHc----CCCcEEEEChHHHHHHHHcCCccccc
Confidence 589999999988888777765322 22467888999999888765553 3347999996 3345667888
Q ss_pred eEEEE
Q 047202 267 VVYVF 271 (735)
Q Consensus 267 V~~VI 271 (735)
+.+||
T Consensus 150 v~~lV 154 (456)
T PRK10590 150 VEILV 154 (456)
T ss_pred ceEEE
Confidence 88777
No 202
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=44.14 E-value=1.2e+02 Score=35.62 Aligned_cols=73 Identities=12% Similarity=0.049 Sum_probs=52.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-----cccc--CCCC
Q 047202 192 GAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-----IAET--SITI 264 (735)
Q Consensus 192 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-----IAEt--sitI 264 (735)
..+||.+|+++=+.++.+.+.... ...++.+..+||+.+...|.+.+.. ...|||+|+ .... .+.+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~---~~~~i~v~~l~Gg~~~~~q~~~l~~----~~dIiV~TP~rL~~~l~~~~~~~l 157 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFG---ADLGLRFALVYGGVDYDKQRELLQQ----GVDVIIATPGRLIDYVKQHKVVSL 157 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHh---ccCCceEEEEECCCCHHHHHHHHhC----CCCEEEECHHHHHHHHHhccccch
Confidence 579999999998888877765432 2235779999999999988877753 246999995 3332 3566
Q ss_pred CCeEEEE
Q 047202 265 DDVVYVF 271 (735)
Q Consensus 265 pdV~~VI 271 (735)
.++.+||
T Consensus 158 ~~v~~lV 164 (572)
T PRK04537 158 HACEICV 164 (572)
T ss_pred hheeeeE
Confidence 7777665
No 203
>PRK08116 hypothetical protein; Validated
Probab=41.40 E-value=52 Score=34.50 Aligned_cols=52 Identities=10% Similarity=0.185 Sum_probs=30.5
Q ss_pred CCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHh
Q 047202 12 LTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSR 68 (735)
Q Consensus 12 L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~ 68 (735)
+.+++++||||++-- -.+|.....|-.++..|.. ....+|+.| ...++.+.+
T Consensus 176 l~~~dlLviDDlg~e-~~t~~~~~~l~~iin~r~~---~~~~~IiTs-N~~~~eL~~ 227 (268)
T PRK08116 176 LVNADLLILDDLGAE-RDTEWAREKVYNIIDSRYR---KGLPTIVTT-NLSLEELKN 227 (268)
T ss_pred hcCCCEEEEecccCC-CCCHHHHHHHHHHHHHHHH---CCCCEEEEC-CCCHHHHHH
Confidence 678999999999731 1345555555566665532 234455555 454444443
No 204
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=40.96 E-value=44 Score=37.11 Aligned_cols=55 Identities=20% Similarity=0.179 Sum_probs=36.4
Q ss_pred CCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCC-cEEEEecCCCChHHHHhhhC
Q 047202 12 LTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPK-LKVILMSATVDSNLFSRYFG 71 (735)
Q Consensus 12 L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~-lklIlmSAT~~~~~f~~yF~ 71 (735)
+.++++||||++. |+..-...|.-++.++.... ++ -.++++|||...+.+.+.|.
T Consensus 252 ~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~----~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 252 SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACG----RDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcC----CCCeEEEEEcCCCCHHHHHHHHH
Confidence 5789999999997 55422224556666665432 23 36788999997766655543
No 205
>PF13871 Helicase_C_4: Helicase_C-like
Probab=40.28 E-value=76 Score=33.47 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=76.2
Q ss_pred CCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC--cEEEEcee
Q 047202 243 RPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP--GICYSLYT 320 (735)
Q Consensus 243 ~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~--G~c~rL~t 320 (735)
.|-.|...|+|-|..+.|||..-.=.-|-| .+.++..+.+.+-|-..+.|--||+-|++. .-.|++.+
T Consensus 56 ~F~~g~k~v~iis~AgstGiSlHAd~~~~n----------qr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~ 125 (278)
T PF13871_consen 56 AFMDGEKDVAIISDAGSTGISLHADRRVKN----------QRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLV 125 (278)
T ss_pred HHhCCCceEEEEecccccccchhccccCCC----------CCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEee
Confidence 456788899999999999999875333332 233444455566788899999999988743 22233222
Q ss_pred h-hhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhhhhhc
Q 047202 321 R-HRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLA 399 (735)
Q Consensus 321 ~-~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG~~l~ 399 (735)
. -..+ ..| ....-..|..+||++...+=|.-+..++
T Consensus 126 t~~~gE-------------------------------~Rf------------as~va~rL~sLgAlt~gdr~~~~~~~~~ 162 (278)
T PF13871_consen 126 TDLPGE-------------------------------RRF------------ASTVARRLESLGALTRGDRRAGGALDLS 162 (278)
T ss_pred cCCHHH-------------------------------HHH------------HHHHHHHHhhccccccCccccccccccc
Confidence 1 1111 112 2233367889999987665554446678
Q ss_pred cCCCchHHHHHHHhh
Q 047202 400 KLPVDVLIGKMMLFG 414 (735)
Q Consensus 400 ~lp~~p~~~k~l~~~ 414 (735)
.+-++-.+|+..+.-
T Consensus 163 ~~n~~~~yg~~aL~~ 177 (278)
T PF13871_consen 163 EFNLDNKYGRKALRR 177 (278)
T ss_pred ccccchHHHHHHHHH
Confidence 888999998876543
No 206
>PF05729 NACHT: NACHT domain
Probab=39.62 E-value=79 Score=29.45 Aligned_cols=62 Identities=23% Similarity=0.239 Sum_probs=42.2
Q ss_pred EEEEcccccCCccHH-----HHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCCc
Q 047202 17 HVIVDEVHERSLLGD-----FLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEGR 81 (735)
Q Consensus 17 ~vIiDEvHER~~~tD-----~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~gr 81 (735)
.+|||=++|-.-..+ -+..+++.++... ..++.|+|+.|.+-....+.+++.....+.+++-
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~ 150 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQA---LPPGVKLIITSRPRAFPDLRRRLKQAQILELEPF 150 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhc---cCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCC
Confidence 488888887544333 2556666666542 2368999999988877778888877656666543
No 207
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=38.40 E-value=1.8e+02 Score=33.11 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=51.8
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc------ccccCCCCC
Q 047202 192 GAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN------IAETSITID 265 (735)
Q Consensus 192 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn------IAEtsitIp 265 (735)
..+||..|+.+=+.+..+.+..... ..++.+..+||+.+...|.+.+.. +.-.|||+|+ .....+.+.
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~---~~~~~v~~~~gg~~~~~~~~~~~~---~~~~Iiv~TP~~Ll~~~~~~~~~l~ 236 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTK---YTGLNVMTFVGGMDFDKQLKQLEA---RFCDILVATPGRLLDFNQRGEVHLD 236 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhc---cCCCEEEEEEccCChHHHHHHHhC---CCCCEEEECHHHHHHHHHcCCcccc
Confidence 4689999999988887777654322 124678999999888777665542 2346999997 233456677
Q ss_pred CeEEEE
Q 047202 266 DVVYVF 271 (735)
Q Consensus 266 dV~~VI 271 (735)
++.|||
T Consensus 237 ~l~~lV 242 (475)
T PRK01297 237 MVEVMV 242 (475)
T ss_pred cCceEE
Confidence 777776
No 208
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=37.50 E-value=67 Score=27.10 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=38.3
Q ss_pred CCCcccccchHHHHHHHHH-cCC-------CchhHhhh---hcCCCChHHHHHHHHHHHHHcCCCC
Q 047202 332 QVPEMQRMPLVELCLQIKL-LSL-------GRIKIFLS---KALEPPKEEAITTAISVLYEVGAIE 386 (735)
Q Consensus 332 ~~PEi~r~~L~~l~L~~k~-l~~-------~~~~~fl~---~~l~pP~~~~i~~a~~~L~~lgal~ 386 (735)
+++..+.+||.+++..+.+ |+- +.+.+.|. +-+.+|+.+.+.+|+..|...+.|=
T Consensus 3 pi~Q~qfiPL~EvlC~~I~dln~~~~~at~E~l~~~L~~~yp~i~~Ps~e~l~~~L~~Li~erkIY 68 (80)
T PF10264_consen 3 PISQSQFIPLPEVLCWVISDLNAAGQPATQETLREHLRKHYPGIAIPSQEVLYNTLGTLIKERKIY 68 (80)
T ss_pred ccccccceeHHHHHHHHHHHHhccCCcchHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHcCcee
Confidence 4677788899877655443 322 22333332 3477899999999999999998884
No 209
>PRK14974 cell division protein FtsY; Provisional
Probab=36.26 E-value=76 Score=34.52 Aligned_cols=54 Identities=20% Similarity=0.322 Sum_probs=35.1
Q ss_pred CCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHH--HhhhC
Q 047202 13 TGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLF--SRYFG 71 (735)
Q Consensus 13 ~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f--~~yF~ 71 (735)
.++++||||.++- ...-.-++.-|+.+...- .|+..++++|||...+.. .++|.
T Consensus 221 ~~~DvVLIDTaGr-~~~~~~lm~eL~~i~~~~----~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 221 RGIDVVLIDTAGR-MHTDANLMDELKKIVRVT----KPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCCEEEEECCCc-cCCcHHHHHHHHHHHHhh----CCceEEEeeccccchhHHHHHHHHH
Confidence 5689999999973 332233455566665432 378889999999843333 45554
No 210
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [].; GO: 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; PDB: 4A4Z_A 2XGJ_B 3L9O_A.
Probab=35.40 E-value=43 Score=32.85 Aligned_cols=46 Identities=20% Similarity=0.369 Sum_probs=26.2
Q ss_pred CCCCCCCCHhhhhhccCCC-ch-HHHHHHHhhcccCChh--HHHHHHhhhc
Q 047202 385 IEGDEELTPLGHHLAKLPV-DV-LIGKMMLFGGIFGCLS--PILSISAFLS 431 (735)
Q Consensus 385 l~~~~~lT~lG~~l~~lp~-~p-~~~k~l~~~~~~~c~~--~~l~iaa~ls 431 (735)
||+++.+|+.|+.++.+.. +. -++-+|..| .|.=++ +++.++|++-
T Consensus 1 id~~~~vt~kGr~a~~I~~~~eLl~te~l~~g-~f~~L~p~elAa~lS~~v 50 (180)
T PF08148_consen 1 IDEDNVVTLKGRVACEIYSEDELLLTELLFSG-VFDDLDPAELAALLSCFV 50 (180)
T ss_dssp B-TTS-BSHHHHHHCC--SSTHHHHHHHHHCT-CCCCS-HHHHHHHHHHHC
T ss_pred CCCCCccCHHHHHHHHHcCcccHHHHHHHHcC-CCCCCCHHHHHHHHHHhh
Confidence 6889999999999999998 44 345555555 444343 3444444443
No 211
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.39 E-value=33 Score=39.10 Aligned_cols=47 Identities=28% Similarity=0.321 Sum_probs=29.1
Q ss_pred CCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHH
Q 047202 10 KNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNL 65 (735)
Q Consensus 10 ~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~ 65 (735)
|.-.++.++||||||. +..+..=.+||-+ .. |+.++++.-||-+...
T Consensus 117 p~~g~~KV~IIDEah~--Ls~~A~NALLKtL-EE------Pp~~viFILaTte~~k 163 (484)
T PRK14956 117 PMGGKYKVYIIDEVHM--LTDQSFNALLKTL-EE------PPAHIVFILATTEFHK 163 (484)
T ss_pred hhcCCCEEEEEechhh--cCHHHHHHHHHHh-hc------CCCceEEEeecCChhh
Confidence 4446789999999994 4555555555543 22 4456666656665443
No 212
>PTZ00110 helicase; Provisional
Probab=34.77 E-value=91 Score=36.37 Aligned_cols=72 Identities=17% Similarity=0.138 Sum_probs=50.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-----cccc-CCCCCC
Q 047202 193 AILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-----IAET-SITIDD 266 (735)
Q Consensus 193 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-----IAEt-sitIpd 266 (735)
.+||..|+++=+.++.+.+.... ...++.+..++++.+..+|...+... ..|||+|+ ..+. .+.+..
T Consensus 205 ~~LIL~PTreLa~Qi~~~~~~~~---~~~~i~~~~~~gg~~~~~q~~~l~~~----~~IlVaTPgrL~d~l~~~~~~l~~ 277 (545)
T PTZ00110 205 IVLVLAPTRELAEQIREQCNKFG---ASSKIRNTVAYGGVPKRGQIYALRRG----VEILIACPGRLIDFLESNVTNLRR 277 (545)
T ss_pred EEEEECChHHHHHHHHHHHHHHh---cccCccEEEEeCCCCHHHHHHHHHcC----CCEEEECHHHHHHHHHcCCCChhh
Confidence 57888999988877777665432 22356788899999988877666432 36999996 3343 355778
Q ss_pred eEEEE
Q 047202 267 VVYVF 271 (735)
Q Consensus 267 V~~VI 271 (735)
|++||
T Consensus 278 v~~lV 282 (545)
T PTZ00110 278 VTYLV 282 (545)
T ss_pred CcEEE
Confidence 88776
No 213
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=34.62 E-value=44 Score=41.82 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=22.7
Q ss_pred CccEEEEccccc-CCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCC
Q 047202 14 GVTHVIVDEVHE-RSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVD 62 (735)
Q Consensus 14 ~~s~vIiDEvHE-R~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~ 62 (735)
++..|||||+|. ++..+- +-..++.+ .. -..+++|+|.-
T Consensus 291 ~W~~VIvDEAHrIKN~~Sk-lskalr~L-~a--------~~RLLLTGTPl 330 (1033)
T PLN03142 291 SWRYIIIDEAHRIKNENSL-LSKTMRLF-ST--------NYRLLITGTPL 330 (1033)
T ss_pred CCCEEEEcCccccCCHHHH-HHHHHHHh-hc--------CcEEEEecCCC
Confidence 468999999996 333332 22223322 11 23578899983
No 214
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=34.61 E-value=79 Score=31.66 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=13.3
Q ss_pred CCCccEEEEcccccCCc
Q 047202 12 LTGVTHVIVDEVHERSL 28 (735)
Q Consensus 12 L~~~s~vIiDEvHER~~ 28 (735)
+.+.++|||||+|.-+.
T Consensus 88 ~~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 88 LEQADLVCLDDVEAIAG 104 (226)
T ss_pred cccCCEEEEeChhhhcC
Confidence 56678999999996544
No 215
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=33.36 E-value=45 Score=39.39 Aligned_cols=50 Identities=18% Similarity=0.299 Sum_probs=35.5
Q ss_pred CCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhC
Q 047202 13 TGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFG 71 (735)
Q Consensus 13 ~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~ 71 (735)
.+++.+|||||++ +..+.+-.+| -.+.. .+.|+|.+|-|-..+...+|..
T Consensus 351 qtfDLLIVDEAqF--Ik~~al~~il-p~l~~------~n~k~I~ISS~Ns~~~sTSFL~ 400 (738)
T PHA03368 351 QDFNLLFVDEANF--IRPDAVQTIM-GFLNQ------TNCKIIFVSSTNTGKASTSFLY 400 (738)
T ss_pred CcccEEEEechhh--CCHHHHHHHH-HHHhc------cCccEEEEecCCCCccchHHHH
Confidence 3688999999997 3445555555 33322 3689999999987777766664
No 216
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=32.69 E-value=19 Score=44.10 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=19.0
Q ss_pred cccccccCCCCCCccEEEEccccc
Q 047202 2 NFCYLQGDKNLTGVTHVIVDEVHE 25 (735)
Q Consensus 2 ~~~~l~~d~~L~~~s~vIiDEvHE 25 (735)
+|..+..++.+.+++++||||||.
T Consensus 424 l~~~~~~~~~~p~~~~lIiDEAH~ 447 (820)
T PRK07246 424 FLTRVQDDKDFARNKVLVFDEAQK 447 (820)
T ss_pred HHHHHhhccCCCCCCEEEEECcch
Confidence 444555667788999999999995
No 217
>KOG1784 consensus Small Nuclear ribonucleoprotein splicing factor [RNA processing and modification]
Probab=31.60 E-value=18 Score=30.77 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=15.5
Q ss_pred CCCccEEEEcccccCCccHHH
Q 047202 12 LTGVTHVIVDEVHERSLLGDF 32 (735)
Q Consensus 12 L~~~s~vIiDEvHER~~~tD~ 32 (735)
+++-+-+||||+|||-..++.
T Consensus 30 FDq~tNlii~~~heRi~s~~~ 50 (96)
T KOG1784|consen 30 FDQTTNLIIDESHERIFSETE 50 (96)
T ss_pred ccccceeeehhhHhhhhhhhc
Confidence 455567999999999655443
No 218
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=29.82 E-value=2.5e+02 Score=33.40 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=53.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCH-HHHHHhcCC-CCCCccEEEEeccccccCCCC---
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVAS-VDQKKVFLR-PPEKIRKVIIATNIAETSITI--- 264 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~-~eq~~vf~~-~~~g~rkVIlaTnIAEtsitI--- 264 (735)
..|..||-++++..++.+.+.|.... .+ -+...|..++ .+..+-|.. ...|..-|+++|.-+=.||++
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l------~~-~~l~qg~~~~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~ 541 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGI------PA-EIVIQSEKNRLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHK 541 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhc------CC-CEEEeCCCccHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCc
Confidence 57899999999999999999987543 12 3445565533 444444443 234567899999999999999
Q ss_pred -------CCeEEEEe
Q 047202 265 -------DDVVYVFD 272 (735)
Q Consensus 265 -------pdV~~VID 272 (735)
+.++.||=
T Consensus 542 ~~~p~~G~~Ls~ViI 556 (636)
T TIGR03117 542 PVSPDKDNLLTDLII 556 (636)
T ss_pred cCCCCCCCcccEEEE
Confidence 34777763
No 219
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.18 E-value=92 Score=35.51 Aligned_cols=61 Identities=25% Similarity=0.166 Sum_probs=48.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
..|..||..|..+=+....+.|... +..+..++|..+..++..++.....|..+||+.|+-
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~-------gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe 110 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKAS-------GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPE 110 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 3677899999998877776766543 456788999999999888887777788889999873
No 220
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=27.79 E-value=27 Score=41.23 Aligned_cols=16 Identities=38% Similarity=0.331 Sum_probs=14.4
Q ss_pred CCCCCccEEEEccccc
Q 047202 10 KNLTGVTHVIVDEVHE 25 (735)
Q Consensus 10 ~~L~~~s~vIiDEvHE 25 (735)
+.|-++++|||||+|.
T Consensus 202 ~iLP~~~~lIiDEAH~ 217 (636)
T TIGR03117 202 GLLPQPDILIVDEAHL 217 (636)
T ss_pred CCCCCCCEEEEeCCcc
Confidence 5788899999999995
No 221
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=27.78 E-value=1.4e+02 Score=30.02 Aligned_cols=61 Identities=11% Similarity=0.000 Sum_probs=31.1
Q ss_pred CCCccEEEEcccccCCccH-HHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH------HHHhhhCCCCeEeeC
Q 047202 12 LTGVTHVIVDEVHERSLLG-DFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN------LFSRYFGDCPVITAE 79 (735)
Q Consensus 12 L~~~s~vIiDEvHER~~~t-D~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~------~f~~yF~~~pvi~i~ 79 (735)
..+.++|||||+|.-+... +.|+.++..... ....+++++++.... .+.+.|..+..+.++
T Consensus 88 ~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~-------~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~ 155 (227)
T PRK08903 88 DPEAELYAVDDVERLDDAQQIALFNLFNRVRA-------HGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELK 155 (227)
T ss_pred cccCCEEEEeChhhcCchHHHHHHHHHHHHHH-------cCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEec
Confidence 4567899999999643222 233344433221 112246777765331 223345444555554
No 222
>PRK13766 Hef nuclease; Provisional
Probab=27.35 E-value=2.5e+02 Score=34.22 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=53.2
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc------cccCC
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI------AETSI 262 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI------AEtsi 262 (735)
.+.|.+||.+|+..-+++..+.+...... ....+..++|+.+..++.+++.. -.||++|.= ...-+
T Consensus 56 ~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~---~~~~v~~~~g~~~~~~r~~~~~~-----~~iiv~T~~~l~~~l~~~~~ 127 (773)
T PRK13766 56 KKGGKVLILAPTKPLVEQHAEFFRKFLNI---PEEKIVVFTGEVSPEKRAELWEK-----AKVIVATPQVIENDLIAGRI 127 (773)
T ss_pred hCCCeEEEEeCcHHHHHHHHHHHHHHhCC---CCceEEEEeCCCCHHHHHHHHhC-----CCEEEECHHHHHHHHHcCCC
Confidence 35789999999999888887777654321 13468889999999888877753 358999851 12234
Q ss_pred CCCCeEEEE
Q 047202 263 TIDDVVYVF 271 (735)
Q Consensus 263 tIpdV~~VI 271 (735)
.+.++.+||
T Consensus 128 ~~~~~~liV 136 (773)
T PRK13766 128 SLEDVSLLI 136 (773)
T ss_pred ChhhCcEEE
Confidence 566777766
No 223
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=26.66 E-value=1.1e+02 Score=35.96 Aligned_cols=61 Identities=16% Similarity=0.124 Sum_probs=48.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
..|.++|..|..+=+....+.|... +..+..+||+++..++..++.....|..+|++.|+-
T Consensus 52 ~~g~~lVisPl~sL~~dq~~~l~~~-------gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe 112 (591)
T TIGR01389 52 LKGLTVVISPLISLMKDQVDQLRAA-------GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE 112 (591)
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh
Confidence 3677899999988877777777653 356889999999999998887777788889888753
No 224
>PTZ00424 helicase 45; Provisional
Probab=26.46 E-value=3.9e+02 Score=29.33 Aligned_cols=83 Identities=11% Similarity=0.035 Sum_probs=51.7
Q ss_pred HHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccc---
Q 047202 182 VCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIA--- 258 (735)
Q Consensus 182 l~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIA--- 258 (735)
+.++......+.+||++|..+=+.++.+.+..... .....+..+.|+....++...+.. + ..||++|+=.
T Consensus 87 l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~---~-~~Ivv~Tp~~l~~ 159 (401)
T PTZ00424 87 LQLIDYDLNACQALILAPTRELAQQIQKVVLALGD---YLKVRCHACVGGTVVRDDINKLKA---G-VHMVVGTPGRVYD 159 (401)
T ss_pred HHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhh---hcCceEEEEECCcCHHHHHHHHcC---C-CCEEEECcHHHHH
Confidence 34443333456799999999877776666554321 123556778888877665544432 2 3699999621
Q ss_pred ---ccCCCCCCeEEEE
Q 047202 259 ---ETSITIDDVVYVF 271 (735)
Q Consensus 259 ---EtsitIpdV~~VI 271 (735)
...+.+.++.+||
T Consensus 160 ~l~~~~~~l~~i~lvV 175 (401)
T PTZ00424 160 MIDKRHLRVDDLKLFI 175 (401)
T ss_pred HHHhCCcccccccEEE
Confidence 2345788888777
No 225
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=26.21 E-value=1.7e+02 Score=25.39 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=31.1
Q ss_pred cchH-HHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCC
Q 047202 339 MPLV-ELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEG 387 (735)
Q Consensus 339 ~~L~-~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~ 387 (735)
.|++ .++..++..|.+..... +..+.- +.+.|..+++.|.++|.|+.
T Consensus 6 ~~l~~~IL~hl~~~~~Dy~k~i-a~~l~~-~~~~v~~~l~~Le~~GLler 53 (92)
T PF10007_consen 6 DPLDLKILQHLKKAGPDYAKSI-ARRLKI-PLEEVREALEKLEEMGLLER 53 (92)
T ss_pred ChhHHHHHHHHHHHCCCcHHHH-HHHHCC-CHHHHHHHHHHHHHCCCeEE
Confidence 3444 45566777777654433 233333 45669999999999999974
No 226
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=26.20 E-value=67 Score=27.46 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=34.6
Q ss_pred cCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCC----------CCCCHhhhhhc
Q 047202 351 LSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGD----------EELTPLGHHLA 399 (735)
Q Consensus 351 l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~----------~~lT~lG~~l~ 399 (735)
.|...+.++. ..+..-++..+...+..|.+.|.|... -.||+.|+.+.
T Consensus 16 ~g~~rf~el~-~~l~~is~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 16 QGPMRFSELQ-RRLPGISPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp TSSEEHHHHH-HHSTTS-HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred hCCCcHHHHH-HhcchhHHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 3555566664 455556788899999999999999643 26999998875
No 227
>TIGR02647 DNA conserved hypothetical protein TIGR02647. Members of this family are found, so far, only in the Gammaproteobacteria. The function is unknown. The location on the chromosome usually is not far from housekeeping genes rather than in what is clearly, say, a prophage region. Some members have been annotated in public databases as DNA-binding protein inhibitor Id-2-related protein, putative transcriptional regulator, or hypothetical DNA binding protein.
Probab=25.15 E-value=78 Score=26.29 Aligned_cols=31 Identities=32% Similarity=0.268 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCCCC--CCCCCHhhhhhcc
Q 047202 370 EAITTAISVLYEVGAIEG--DEELTPLGHHLAK 400 (735)
Q Consensus 370 ~~i~~a~~~L~~lgal~~--~~~lT~lG~~l~~ 400 (735)
..+.+|.+.|.+-|.|+. .+-||+.|...++
T Consensus 34 p~~i~a~~RLheKGLI~~pdGgyLT~~G~~~aE 66 (77)
T TIGR02647 34 PAAVAAAARLHEKGLTTQPDGGYLTSLGLEAAE 66 (77)
T ss_pred HHHHHHHHHHHHcCCccCCCCCEecHHHHHHHH
Confidence 347889999999999985 3579999988763
No 228
>PRK08727 hypothetical protein; Validated
Probab=24.89 E-value=1.7e+02 Score=29.75 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=12.9
Q ss_pred CCCccEEEEcccccCC
Q 047202 12 LTGVTHVIVDEVHERS 27 (735)
Q Consensus 12 L~~~s~vIiDEvHER~ 27 (735)
+.++.+|||||+|.-.
T Consensus 91 l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 91 LEGRSLVALDGLESIA 106 (233)
T ss_pred HhcCCEEEEeCccccc
Confidence 5678899999999543
No 229
>COG5631 Predicted transcription regulator, contains HTH domain (MarR family) [Transcription]
Probab=24.12 E-value=96 Score=29.62 Aligned_cols=63 Identities=22% Similarity=0.195 Sum_probs=44.8
Q ss_pred cccchHHHHHHHHHcCC--CchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCC-------CCCHhhhhhcc
Q 047202 337 QRMPLVELCLQIKLLSL--GRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDE-------ELTPLGHHLAK 400 (735)
Q Consensus 337 ~r~~L~~l~L~~k~l~~--~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~-------~lT~lG~~l~~ 400 (735)
--++++.++|++....- +.+.+. ...++--+.-.+.-++..|...|.|+..+ ++|++|...+.
T Consensus 80 ~ls~~e~l~lH~irhrdR~K~laDi-c~~ln~eDth~itYslrKL~k~gLit~t~~gkevTy~vTa~G~~aca 151 (199)
T COG5631 80 SLSGPENLLLHIIRHRDRPKSLADI-CQMLNREDTHNITYSLRKLLKGGLITRTGSGKEVTYEVTALGHRACA 151 (199)
T ss_pred CCcchHHHHHHHHhhcCchhhHHHH-HHHhccccchhHHHHHHHHHhccceecCCCCceEEEEEecchHHHHH
Confidence 34567788888776532 234443 24566667777899999999999998654 69999987753
No 230
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.81 E-value=64 Score=38.92 Aligned_cols=49 Identities=29% Similarity=0.350 Sum_probs=26.6
Q ss_pred CCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHH
Q 047202 9 DKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLF 66 (735)
Q Consensus 9 d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f 66 (735)
.|.-.+++++||||+|.-+ .+-.=.+|| .+..-. ++.++||. |-+..++
T Consensus 114 ~P~~gr~KVIIIDEah~LT--~~A~NALLK-tLEEPP----~~v~FILa--Ttd~~KI 162 (830)
T PRK07003 114 APVDARFKVYMIDEVHMLT--NHAFNAMLK-TLEEPP----PHVKFILA--TTDPQKI 162 (830)
T ss_pred ccccCCceEEEEeChhhCC--HHHHHHHHH-HHHhcC----CCeEEEEE--ECChhhc
Confidence 3445678999999999643 333333444 444321 34555553 3344443
No 231
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=23.67 E-value=81 Score=39.50 Aligned_cols=35 Identities=43% Similarity=0.513 Sum_probs=24.9
Q ss_pred EEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC
Q 047202 17 HVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV 61 (735)
Q Consensus 17 ~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~ 61 (735)
+||+|||| ||-..+ +-..++..+ ++--.+.++.|.
T Consensus 379 vvI~DEaH-RSQ~G~-~~~~~~~~~--------~~a~~~gFTGTP 413 (962)
T COG0610 379 VVIIDEAH-RSQYGE-LAKLLKKAL--------KKAIFIGFTGTP 413 (962)
T ss_pred EEEEechh-hccccH-HHHHHHHHh--------ccceEEEeeCCc
Confidence 68999999 776544 334445555 446789999998
No 232
>PRK05255 hypothetical protein; Provisional
Probab=23.61 E-value=6.9e+02 Score=24.35 Aligned_cols=50 Identities=28% Similarity=0.347 Sum_probs=40.2
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhh-hhhccCCCchHHHHHHHhhccc
Q 047202 363 ALEPPKEEAITTAISVLYEVGAIEGDEELTPLG-HHLAKLPVDVLIGKMMLFGGIF 417 (735)
Q Consensus 363 ~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG-~~l~~lp~~p~~~k~l~~~~~~ 417 (735)
-+++|+.+.++..+..|+.+| .+|+.|+ ..+..||++..+-..|+.+-.+
T Consensus 13 ~~~~~SKSq~KRe~~alq~LG-----~~L~~Ls~~ql~~lpL~e~L~~Ai~ea~ri 63 (171)
T PRK05255 13 EIIWVSKSQIKRDAEALQDLG-----EELVELSKDQLAKLPLDEDLRDAILEAQRI 63 (171)
T ss_pred cccCCChHHHHHHHHHHHHHH-----HHHHhCCHHHHhcCCCCHHHHHHHHHHhhh
Confidence 456789999999999999998 3577776 5689999999998887776544
No 233
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=23.37 E-value=1.5e+02 Score=35.43 Aligned_cols=50 Identities=30% Similarity=0.270 Sum_probs=35.3
Q ss_pred CccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCC
Q 047202 14 GVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGD 72 (735)
Q Consensus 14 ~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~ 72 (735)
+++.+|||||+. +..+++-.++=-+. . .+-|+|++|-+-+++.+..+.++
T Consensus 294 ~~DLLIVDEAAf--I~~~~l~aIlP~l~-~------~~~k~IiISS~~~~~s~tS~L~n 343 (752)
T PHA03333 294 NPDLVIVDEAAF--VNPGALLSVLPLMA-V------KGTKQIHISSPVDADSWISRVGE 343 (752)
T ss_pred CCCEEEEECccc--CCHHHHHHHHHHHc-c------CCCceEEEeCCCCcchHHHHhhh
Confidence 578999999986 33355544332222 1 25789999999999999888765
No 234
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=23.24 E-value=41 Score=36.71 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=14.4
Q ss_pred CCCCCCccEEEEccccc
Q 047202 9 DKNLTGVTHVIVDEVHE 25 (735)
Q Consensus 9 d~~L~~~s~vIiDEvHE 25 (735)
+.....+++|||||+|.
T Consensus 78 ~~~~~~~DviivDEAqr 94 (352)
T PF09848_consen 78 DKEKNKYDVIIVDEAQR 94 (352)
T ss_pred cccCCcCCEEEEehhHh
Confidence 45678999999999993
No 235
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=23.22 E-value=1.6e+02 Score=29.21 Aligned_cols=49 Identities=33% Similarity=0.383 Sum_probs=34.5
Q ss_pred CCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHH
Q 047202 13 TGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLF 66 (735)
Q Consensus 13 ~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f 66 (735)
+++++|+||-+- |+....-++.-++.++.... |.--++.||||...+.+
T Consensus 82 ~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~----~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 82 KGYDLVLIDTAG-RSPRDEELLEELKKLLEALN----PDEVHLVLSATMGQEDL 130 (196)
T ss_dssp TTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHS----SSEEEEEEEGGGGGHHH
T ss_pred cCCCEEEEecCC-cchhhHHHHHHHHHHhhhcC----CccceEEEecccChHHH
Confidence 568999999996 55555566677777766542 56778889999965543
No 236
>PRK09087 hypothetical protein; Validated
Probab=22.86 E-value=2e+02 Score=29.25 Aligned_cols=56 Identities=9% Similarity=0.189 Sum_probs=33.2
Q ss_pred cEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHH-------HHhhhCCCCeEeeC
Q 047202 16 THVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNL-------FSRYFGDCPVITAE 79 (735)
Q Consensus 16 s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~-------f~~yF~~~pvi~i~ 79 (735)
..|+||++|--..+.+-++.++..+...+ +.++++|+..+.. +.+-|..+.++.++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~~~g--------~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~ 151 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVRQAG--------TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIG 151 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHHhCC--------CeEEEECCCChHHhccccccHHHHHhCCceeecC
Confidence 57999999975555566666666555422 3566666653333 34445555555554
No 237
>PRK08181 transposase; Validated
Probab=22.57 E-value=1.6e+02 Score=30.99 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=33.0
Q ss_pred CCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCC
Q 047202 12 LTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGD 72 (735)
Q Consensus 12 L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~ 72 (735)
+.+++.+||||++--..+ +.-...|-+++..|.+ . +=++++.-.....+...|++
T Consensus 165 l~~~dLLIIDDlg~~~~~-~~~~~~Lf~lin~R~~----~-~s~IiTSN~~~~~w~~~~~D 219 (269)
T PRK08181 165 LDKFDLLILDDLAYVTKD-QAETSVLFELISARYE----R-RSILITANQPFGEWNRVFPD 219 (269)
T ss_pred HhcCCEEEEeccccccCC-HHHHHHHHHHHHHHHh----C-CCEEEEcCCCHHHHHHhcCC
Confidence 578899999999854332 3333344445554432 2 23555556677778777764
No 238
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=22.37 E-value=1.4e+02 Score=34.88 Aligned_cols=60 Identities=20% Similarity=0.210 Sum_probs=49.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN 256 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn 256 (735)
.+|-.||--|...=+..-.+.|... ++.+..++|+|+.+|+..++.....|..|++.-++
T Consensus 56 ~~G~TLVVSPLiSLM~DQV~~l~~~-------Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP 115 (590)
T COG0514 56 LEGLTLVVSPLISLMKDQVDQLEAA-------GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP 115 (590)
T ss_pred cCCCEEEECchHHHHHHHHHHHHHc-------CceeehhhcccCHHHHHHHHHHHhcCceeEEEECc
Confidence 3788999999887776666666654 57899999999999999999999999888876554
No 239
>PRK09401 reverse gyrase; Reviewed
Probab=22.05 E-value=1.5e+02 Score=37.93 Aligned_cols=80 Identities=14% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-----ccccCCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-----IAETSITI 264 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-----IAEtsitI 264 (735)
.++.+||.+|+++=+.++.+.+....... .....++..|++++..++.+..+....|...|+|+|+ -.+ .+..
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~ 199 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPK 199 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccc
Confidence 36789999999999999888887543211 1122345557777766666555555556678999994 333 3444
Q ss_pred CCeEEEE
Q 047202 265 DDVVYVF 271 (735)
Q Consensus 265 pdV~~VI 271 (735)
..+.+||
T Consensus 200 ~~~~~lV 206 (1176)
T PRK09401 200 KKFDFVF 206 (1176)
T ss_pred cccCEEE
Confidence 4466655
No 240
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=22.02 E-value=52 Score=37.81 Aligned_cols=50 Identities=26% Similarity=0.251 Sum_probs=31.1
Q ss_pred cCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHH
Q 047202 8 GDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLF 66 (735)
Q Consensus 8 ~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f 66 (735)
--|.-.+|++.||||||. +-+-..=++||.+ .+ |+..|+..=||-+..++
T Consensus 113 y~P~~~ryKVyiIDEvHM--LS~~afNALLKTL----EE---PP~hV~FIlATTe~~Ki 162 (515)
T COG2812 113 YAPSEGRYKVYIIDEVHM--LSKQAFNALLKTL----EE---PPSHVKFILATTEPQKI 162 (515)
T ss_pred cCCccccceEEEEecHHh--hhHHHHHHHhccc----cc---CccCeEEEEecCCcCcC
Confidence 356788999999999994 2222223344432 22 55566666688876654
No 241
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=21.73 E-value=2.2e+02 Score=29.98 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=33.4
Q ss_pred CCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCCh---HHHHhhhCC
Q 047202 13 TGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDS---NLFSRYFGD 72 (735)
Q Consensus 13 ~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~---~~f~~yF~~ 72 (735)
.++++||||-+= |+..-+-++.-++.++..- .|+..+..+|||... ..+.+.|..
T Consensus 153 ~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~----~~~~~~LVl~a~~~~~d~~~~~~~f~~ 210 (270)
T PRK06731 153 ARVDYILIDTAG-KNYRASETVEEMIETMGQV----EPDYICLTLSASMKSKDMIEIITNFKD 210 (270)
T ss_pred CCCCEEEEECCC-CCcCCHHHHHHHHHHHhhh----CCCeEEEEEcCccCHHHHHHHHHHhCC
Confidence 478999999994 3322233444455555322 256667789999844 344566654
No 242
>KOG3360 consensus Acylphosphatase [Energy production and conversion]
Probab=21.48 E-value=30 Score=30.01 Aligned_cols=18 Identities=39% Similarity=0.733 Sum_probs=14.0
Q ss_pred CCCCCcEEEEceehhhHhh
Q 047202 308 GRVKPGICYSLYTRHRYEK 326 (735)
Q Consensus 308 GR~~~G~c~rL~t~~~~~~ 326 (735)
||+ +|.|||.+|.+.-..
T Consensus 16 GRV-QGv~fr~~t~~~a~~ 33 (98)
T KOG3360|consen 16 GRV-QGVCFRKHTLDEAKK 33 (98)
T ss_pred eee-ccchhhHHHHHHHHh
Confidence 555 699999999886654
No 243
>PRK04296 thymidine kinase; Provisional
Probab=21.32 E-value=1.6e+02 Score=29.01 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=21.9
Q ss_pred CCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEec
Q 047202 13 TGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMS 58 (735)
Q Consensus 13 ~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmS 58 (735)
.++++|||||+|= +..+.+..+++.+.. .+..+|+..
T Consensus 77 ~~~dvviIDEaq~--l~~~~v~~l~~~l~~-------~g~~vi~tg 113 (190)
T PRK04296 77 EKIDCVLIDEAQF--LDKEQVVQLAEVLDD-------LGIPVICYG 113 (190)
T ss_pred CCCCEEEEEcccc--CCHHHHHHHHHHHHH-------cCCeEEEEe
Confidence 4789999999972 333444455544332 345566653
No 244
>PRK05642 DNA replication initiation factor; Validated
Probab=21.21 E-value=1.1e+02 Score=31.27 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=27.2
Q ss_pred CCCccEEEEcccccCC---ccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHH
Q 047202 12 LTGVTHVIVDEVHERS---LLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLF 66 (735)
Q Consensus 12 L~~~s~vIiDEvHER~---~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f 66 (735)
+.+++++|||++|--. -....|+.++..+... + +.+++++|..+..+
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~-------g-~~ilits~~~p~~l 144 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDS-------G-RRLLLAASKSPREL 144 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhc-------C-CEEEEeCCCCHHHc
Confidence 5567899999999321 1123355555443321 2 46788888755443
No 245
>COG3028 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.12 E-value=5.5e+02 Score=24.98 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHHHHHHHcCCCCCCCCCCHhh-hhhccCCCchHHHHHHHhhcccCCh----hHHHHHHhhhccCCCccc
Q 047202 364 LEPPKEEAITTAISVLYEVGAIEGDEELTPLG-HHLAKLPVDVLIGKMMLFGGIFGCL----SPILSISAFLSYKSPFIY 438 (735)
Q Consensus 364 l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG-~~l~~lp~~p~~~k~l~~~~~~~c~----~~~l~iaa~ls~~~~f~~ 438 (735)
+..++.+.++.-...|+.+| .+||.|+ ..++.+|++-.+...|..+-.+.-- -.+--|.=+|-..++
T Consensus 24 ~iwvSKSqiKRd~~aLq~LG-----e~L~~L~~~~L~KiPL~E~L~~Ai~~aqri~~~~arrRQlQyIGKlmR~~Dv--- 95 (187)
T COG3028 24 IIWVSKSQIKRDAEALQDLG-----EELVDLTKAALAKIPLDEDLLEAIELAQRIKSEIARRRQLQYIGKLMRDRDV--- 95 (187)
T ss_pred cccccHHHHHHHHHHHHHHH-----HHHHhcCHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh---
Confidence 44678889999999999997 3577777 4689999999998888776543221 123333334332211
Q ss_pred CcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Q 047202 439 PKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLMVAYKKWQKILLKRGTKAAQQFCSK 501 (735)
Q Consensus 439 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sDhl~~l~~y~~w~~~~~~~~~~~~~~~C~~ 501 (735)
+..+..+ ++. .....-+.++++..+.|+...-..|..+-..|-..
T Consensus 96 --------epI~~~L--dkl--------~~~~~q~~a~lHklE~~RdrLia~GD~Alt~~l~~ 140 (187)
T COG3028 96 --------EPIRAAL--DKL--------RNRHNQQVALLHKLEQLRDRLIAEGDGALTEFLNQ 140 (187)
T ss_pred --------HHHHHHH--HHH--------hhhHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 1111111 010 01334567888999999876555565555555444
No 246
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=20.97 E-value=5.4e+02 Score=22.26 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=41.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI 257 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI 257 (735)
...+.++|++|...-.+...+.+...... ...+..+|+.....++..... +...|+++|.-
T Consensus 28 ~~~~~~lv~~p~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~~~i~i~t~~ 88 (144)
T cd00046 28 LKGGQVLVLAPTRELANQVAERLKELFGE----GIKVGYLIGGTSIKQQEKLLS----GKTDIVVGTPG 88 (144)
T ss_pred ccCCCEEEEcCcHHHHHHHHHHHHHHhhC----CcEEEEEecCcchhHHHHHhc----CCCCEEEECcH
Confidence 35679999999999888888777654321 355777888776665553322 34567888775
No 247
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.97 E-value=1.1e+02 Score=34.84 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=28.9
Q ss_pred CccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCCh
Q 047202 14 GVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDS 63 (735)
Q Consensus 14 ~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~ 63 (735)
+.+.+|+||+|+-. .+-+...++.-+.+|. .++-+++.+|..+.
T Consensus 123 ~~~~~i~DE~h~~~--~~~~~~~l~~g~~~r~----~pl~~~ISTag~~~ 166 (477)
T PF03354_consen 123 NPSLAIFDELHAHK--DDELYDALESGMGARP----NPLIIIISTAGDDR 166 (477)
T ss_pred CCceEEEeCCCCCC--CHHHHHHHHhhhccCC----CceEEEEeCCCCCC
Confidence 56899999999743 3336666776666553 35556666676543
No 248
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=20.89 E-value=74 Score=37.82 Aligned_cols=49 Identities=27% Similarity=0.292 Sum_probs=28.0
Q ss_pred CCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHH
Q 047202 9 DKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLF 66 (735)
Q Consensus 9 d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f 66 (735)
.|.-.++.++||||||.- ..+..=.+|| .+..- .+..++|+ +|-+...+
T Consensus 114 ~p~~g~~KV~IIDEah~L--s~~a~NALLK-tLEEP----p~~v~FIL--~Tt~~~kL 162 (647)
T PRK07994 114 APARGRFKVYLIDEVHML--SRHSFNALLK-TLEEP----PEHVKFLL--ATTDPQKL 162 (647)
T ss_pred hhhcCCCEEEEEechHhC--CHHHHHHHHH-HHHcC----CCCeEEEE--ecCCcccc
Confidence 344568999999999953 4444445555 44332 12344444 46665543
No 249
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=20.51 E-value=69 Score=35.43 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=29.2
Q ss_pred CCccEEEEcccccCC-ccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH
Q 047202 13 TGVTHVIVDEVHERS-LLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN 64 (735)
Q Consensus 13 ~~~s~vIiDEvHER~-~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~ 64 (735)
.+=++++|||||.-+ -+.|++|-.+- +=.|||.-||-...
T Consensus 103 gr~tiLflDEIHRfnK~QQD~lLp~vE------------~G~iilIGATTENP 143 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDALLPHVE------------NGTIILIGATTENP 143 (436)
T ss_pred CCceEEEEehhhhcChhhhhhhhhhhc------------CCeEEEEeccCCCC
Confidence 345789999999644 36788887663 34699999998533
Done!