Query 047202
Match_columns 735
No_of_seqs 312 out of 2594
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:14:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xau_A PRE-mRNA-splicing facto 100.0 1.9E-88 6.6E-93 805.2 51.0 521 2-664 196-725 (773)
2 3i4u_A ATP-dependent RNA helic 100.0 3E-48 1E-52 402.9 23.8 244 355-664 3-246 (270)
3 2va8_A SSO2462, SKI2-type heli 100.0 5.5E-41 1.9E-45 398.6 25.5 431 4-525 134-627 (715)
4 2p6r_A Afuhel308 helicase; pro 100.0 1E-39 3.5E-44 386.8 31.7 419 5-523 128-604 (702)
5 2zj8_A DNA helicase, putative 100.0 2.4E-36 8.2E-41 358.9 27.8 341 8-442 131-535 (720)
6 2z83_A Helicase/nucleoside tri 100.0 8E-29 2.7E-33 278.7 9.8 209 2-322 100-313 (459)
7 2jlq_A Serine protease subunit 99.9 4.5E-27 1.5E-31 263.9 16.6 207 2-320 98-309 (451)
8 3rc3_A ATP-dependent RNA helic 99.9 6.3E-26 2.2E-30 263.9 10.6 149 190-352 320-476 (677)
9 2whx_A Serine protease/ntpase/ 99.9 5.6E-25 1.9E-29 255.0 13.5 207 2-320 265-476 (618)
10 4f92_B U5 small nuclear ribonu 99.9 1.2E-23 4E-28 266.7 24.0 339 3-429 1035-1450(1724)
11 1yks_A Genome polyprotein [con 99.9 1.9E-24 6.4E-29 241.7 12.4 205 4-320 89-297 (440)
12 3eaq_A Heat resistant RNA depe 99.9 2E-24 6.7E-29 217.7 11.0 174 180-379 20-211 (212)
13 4f92_B U5 small nuclear ribonu 99.9 1.2E-23 4E-28 266.7 20.4 348 4-438 197-629 (1724)
14 2wv9_A Flavivirin protease NS2 99.9 5.4E-24 1.8E-28 248.4 13.8 206 3-320 321-531 (673)
15 3o8b_A HCV NS3 protease/helica 99.9 1.1E-23 3.9E-28 242.4 15.3 119 190-325 395-517 (666)
16 3i32_A Heat resistant RNA depe 99.9 2.7E-24 9.1E-29 227.4 8.5 179 180-384 17-213 (300)
17 2v6i_A RNA helicase; membrane, 99.9 8.9E-24 3.1E-28 235.6 11.2 204 4-320 83-288 (431)
18 3l9o_A ATP-dependent RNA helic 99.9 2.7E-23 9.1E-28 254.9 8.7 134 178-322 429-597 (1108)
19 3eiq_A Eukaryotic initiation f 99.9 3.2E-23 1.1E-27 229.1 8.4 121 181-326 270-391 (414)
20 4a4z_A Antiviral helicase SKI2 99.9 7.4E-23 2.5E-27 248.8 12.0 132 177-320 323-490 (997)
21 3pey_A ATP-dependent RNA helic 99.9 2.8E-22 9.7E-27 219.5 15.6 125 180-323 232-357 (395)
22 3fht_A ATP-dependent RNA helic 99.9 8.1E-22 2.8E-26 217.5 13.9 120 185-323 260-380 (412)
23 2v1x_A ATP-dependent DNA helic 99.9 3.4E-21 1.2E-25 222.4 18.7 123 179-326 255-378 (591)
24 1hv8_A Putative ATP-dependent 99.9 3.5E-21 1.2E-25 208.6 16.0 113 189-326 236-349 (367)
25 2i4i_A ATP-dependent RNA helic 99.9 2.7E-21 9.3E-26 213.9 15.2 113 189-326 274-387 (417)
26 2xgj_A ATP-dependent RNA helic 99.9 3.7E-21 1.3E-25 234.0 17.5 264 9-322 187-499 (1010)
27 1s2m_A Putative ATP-dependent 99.9 8.3E-21 2.8E-25 208.9 18.4 115 187-326 254-369 (400)
28 2ykg_A Probable ATP-dependent 99.8 8.9E-22 3E-26 232.8 9.9 150 178-350 385-553 (696)
29 1oyw_A RECQ helicase, ATP-depe 99.8 1.6E-20 5.4E-25 214.4 17.5 111 190-325 235-346 (523)
30 2j0s_A ATP-dependent RNA helic 99.8 7.3E-21 2.5E-25 210.2 14.0 112 189-325 274-386 (410)
31 1xti_A Probable ATP-dependent 99.8 3.1E-20 1.1E-24 203.4 18.5 111 189-324 248-359 (391)
32 2db3_A ATP-dependent RNA helic 99.8 2.2E-20 7.4E-25 208.6 16.1 105 193-322 302-407 (434)
33 3i5x_A ATP-dependent RNA helic 99.8 2.1E-20 7.3E-25 215.5 16.2 124 180-325 328-452 (563)
34 3sqw_A ATP-dependent RNA helic 99.8 6.9E-20 2.4E-24 212.0 16.2 123 180-324 277-400 (579)
35 3fmp_B ATP-dependent RNA helic 99.8 2E-21 6.9E-26 219.6 3.1 120 185-323 327-447 (479)
36 1fuu_A Yeast initiation factor 99.8 5.3E-21 1.8E-25 209.6 5.2 113 189-326 257-370 (394)
37 3fho_A ATP-dependent RNA helic 99.8 7.5E-21 2.6E-25 216.6 5.0 122 182-322 348-470 (508)
38 2z0m_A 337AA long hypothetical 99.8 1.4E-19 4.8E-24 193.7 10.9 103 189-320 218-321 (337)
39 3tbk_A RIG-I helicase domain; 99.8 2E-18 6.9E-23 197.7 16.0 130 177-325 375-510 (555)
40 4a2p_A RIG-I, retinoic acid in 99.8 2.5E-18 8.4E-23 197.3 15.0 119 189-326 388-512 (556)
41 1wp9_A ATP-dependent RNA helic 99.8 2.7E-18 9.2E-23 192.3 13.8 124 178-326 348-479 (494)
42 4gl2_A Interferon-induced heli 99.7 6.6E-19 2.3E-23 208.3 5.0 110 191-320 400-517 (699)
43 2eyq_A TRCF, transcription-rep 99.7 2.3E-17 7.9E-22 203.5 17.9 111 190-322 811-922 (1151)
44 3oiy_A Reverse gyrase helicase 99.7 5.2E-18 1.8E-22 187.9 9.9 103 191-322 252-365 (414)
45 1gm5_A RECG; helicase, replica 99.7 1.1E-18 3.6E-23 206.3 4.1 109 190-320 577-695 (780)
46 2rb4_A ATP-dependent RNA helic 99.7 1.1E-16 3.9E-21 155.7 12.8 128 179-325 22-150 (175)
47 4a2q_A RIG-I, retinoic acid in 99.7 4.2E-17 1.4E-21 195.5 11.6 118 189-325 629-752 (797)
48 4a2w_A RIG-I, retinoic acid in 99.7 1.4E-16 4.7E-21 193.6 15.4 118 189-325 629-752 (936)
49 1fuk_A Eukaryotic initiation f 99.7 7.2E-17 2.5E-21 155.6 9.8 120 181-325 20-140 (165)
50 2hjv_A ATP-dependent RNA helic 99.7 1.3E-16 4.4E-21 153.5 11.0 114 187-325 31-145 (163)
51 2jgn_A DBX, DDX3, ATP-dependen 99.6 2.7E-16 9.4E-21 154.5 8.2 111 189-324 44-155 (185)
52 1t5i_A C_terminal domain of A 99.6 4.5E-16 1.5E-20 151.1 8.2 117 181-322 21-138 (172)
53 1c4o_A DNA nucleotide excision 99.6 4.1E-15 1.4E-19 173.9 16.7 113 190-322 438-550 (664)
54 2p6n_A ATP-dependent RNA helic 99.6 1.2E-15 4.1E-20 150.7 9.4 107 191-322 54-161 (191)
55 4ddu_A Reverse gyrase; topoiso 99.6 1.6E-16 5.3E-21 195.0 3.3 74 191-277 309-388 (1104)
56 2yjt_D ATP-dependent RNA helic 99.4 7.4E-17 2.5E-21 156.3 0.0 120 181-325 20-140 (170)
57 2d7d_A Uvrabc system protein B 99.6 6.1E-15 2.1E-19 172.4 16.0 114 190-323 444-557 (661)
58 2oca_A DAR protein, ATP-depend 99.6 3E-15 1E-19 170.2 10.5 116 178-320 336-453 (510)
59 1gku_B Reverse gyrase, TOP-RG; 99.6 6.2E-16 2.1E-20 189.6 2.7 74 191-277 275-353 (1054)
60 2fwr_A DNA repair protein RAD2 99.5 8.1E-16 2.8E-20 173.3 2.1 108 189-326 347-458 (472)
61 3h1t_A Type I site-specific re 99.4 1.4E-12 4.9E-17 150.9 14.4 109 185-312 433-545 (590)
62 3dmq_A RNA polymerase-associat 99.4 1.3E-12 4.4E-17 159.1 12.0 124 179-326 491-619 (968)
63 1tf5_A Preprotein translocase 99.3 1E-11 3.6E-16 144.7 15.1 106 191-323 432-546 (844)
64 3jux_A Protein translocase sub 99.3 8.7E-12 3E-16 142.2 11.9 106 191-323 474-588 (822)
65 2fsf_A Preprotein translocase 99.3 2.5E-11 8.5E-16 141.2 14.3 107 190-323 440-584 (853)
66 1nkt_A Preprotein translocase 99.2 1.1E-10 3.7E-15 136.0 13.7 105 191-322 460-617 (922)
67 1z63_A Helicase of the SNF2/RA 99.2 1.4E-10 4.8E-15 131.3 14.2 113 190-326 340-457 (500)
68 3llm_A ATP-dependent RNA helic 99.1 5.2E-11 1.8E-15 121.2 6.5 63 11-78 173-235 (235)
69 1z5z_A Helicase of the SNF2/RA 99.0 9.7E-10 3.3E-14 114.3 9.1 123 178-326 101-228 (271)
70 2w00_A HSDR, R.ECOR124I; ATP-b 98.9 8.7E-09 3E-13 125.0 17.1 104 191-313 537-695 (1038)
71 1z3i_X Similar to RAD54-like; 98.6 1.3E-07 4.6E-12 110.2 11.7 112 190-326 415-532 (644)
72 3mwy_W Chromo domain-containin 98.5 2.8E-07 9.7E-12 110.2 11.5 123 178-327 561-689 (800)
73 1qde_A EIF4A, translation init 97.2 0.00021 7E-09 71.1 4.4 70 10-85 151-223 (224)
74 2vl7_A XPD; helicase, unknown 97.1 0.00021 7.1E-09 81.4 4.3 127 178-318 372-518 (540)
75 2gxq_A Heat resistant RNA depe 96.8 0.00081 2.8E-08 65.7 4.9 62 10-77 140-204 (207)
76 3dkp_A Probable ATP-dependent 96.8 0.00084 2.9E-08 67.7 4.7 68 10-81 171-243 (245)
77 2pl3_A Probable ATP-dependent 96.8 0.00069 2.4E-08 67.9 4.0 66 10-81 167-235 (236)
78 3iuy_A Probable ATP-dependent 96.7 0.00076 2.6E-08 67.2 3.6 56 11-72 164-222 (228)
79 3ber_A Probable ATP-dependent 96.7 0.00072 2.5E-08 68.7 3.3 62 11-78 183-247 (249)
80 2oxc_A Probable ATP-dependent 96.6 0.00055 1.9E-08 68.5 2.0 60 11-78 163-228 (230)
81 1vec_A ATP-dependent RNA helic 96.6 0.0012 4.2E-08 64.4 4.3 56 11-72 143-201 (206)
82 3bor_A Human initiation factor 96.4 0.0023 8E-08 64.2 4.5 59 11-78 170-234 (237)
83 1q0u_A Bstdead; DEAD protein, 96.3 0.0023 7.7E-08 63.4 4.3 62 11-78 147-211 (219)
84 1t6n_A Probable ATP-dependent 96.3 0.0026 8.9E-08 62.9 4.7 61 11-76 155-218 (220)
85 3fe2_A Probable ATP-dependent 96.3 0.0025 8.7E-08 64.1 4.6 63 11-79 173-238 (242)
86 2ipc_A Preprotein translocase 96.3 0.014 4.7E-07 68.6 10.9 22 191-212 443-464 (997)
87 3ly5_A ATP-dependent RNA helic 96.0 0.004 1.4E-07 63.6 4.4 59 10-74 197-258 (262)
88 3fmo_B ATP-dependent RNA helic 96.0 0.0022 7.7E-08 67.0 2.4 63 11-78 232-297 (300)
89 1wrb_A DJVLGB; RNA helicase, D 95.4 0.015 5.3E-07 58.6 5.8 66 11-78 171-239 (253)
90 3b6e_A Interferon-induced heli 94.9 0.0073 2.5E-07 59.0 1.6 51 10-60 158-216 (216)
91 1rif_A DAR protein, DNA helica 92.8 0.033 1.1E-06 57.3 1.7 41 11-61 222-262 (282)
92 3crv_A XPD/RAD3 related DNA he 87.0 8.7 0.0003 43.1 15.5 125 178-318 381-528 (551)
93 4a15_A XPD helicase, ATP-depen 85.1 0.99 3.4E-05 51.8 6.4 125 180-318 438-581 (620)
94 3hgt_A HDA1 complex subunit 3; 76.8 7.2 0.00025 40.6 8.8 122 175-326 111-241 (328)
95 1z3i_X Similar to RAD54-like; 62.1 8.2 0.00028 44.3 6.0 43 13-65 191-234 (644)
96 1t6n_A Probable ATP-dependent 57.7 34 0.0011 32.6 8.8 76 191-271 82-163 (220)
97 1qde_A EIF4A, translation init 57.7 27 0.00091 33.4 8.1 82 182-271 73-160 (224)
98 1vec_A ATP-dependent RNA helic 55.3 56 0.0019 30.5 9.8 76 190-271 70-151 (206)
99 1gm5_A RECG; helicase, replica 53.8 15 0.00052 43.1 6.3 78 191-271 417-495 (780)
100 3fe2_A Probable ATP-dependent 53.0 48 0.0016 32.1 9.2 75 190-271 101-181 (242)
101 3ber_A Probable ATP-dependent 50.6 57 0.002 31.9 9.3 84 181-271 101-191 (249)
102 3oiy_A Reverse gyrase helicase 50.2 16 0.00056 38.8 5.6 64 189-256 62-125 (414)
103 2eyq_A TRCF, transcription-rep 45.5 39 0.0013 41.5 8.4 78 191-271 652-730 (1151)
104 2oxc_A Probable ATP-dependent 45.1 67 0.0023 30.8 8.7 68 182-256 83-150 (230)
105 3iuy_A Probable ATP-dependent 41.1 41 0.0014 32.2 6.4 74 190-271 93-172 (228)
106 3l9o_A ATP-dependent RNA helic 40.8 28 0.00094 42.7 6.0 49 371-419 916-966 (1108)
107 3bor_A Human initiation factor 40.6 68 0.0023 31.0 7.9 76 190-271 97-178 (237)
108 2gxq_A Heat resistant RNA depe 39.0 62 0.0021 30.1 7.2 73 190-271 71-149 (207)
109 1wrb_A DJVLGB; RNA helicase, D 37.5 1.3E+02 0.0046 28.9 9.7 73 192-271 101-179 (253)
110 2xgj_A ATP-dependent RNA helic 36.1 49 0.0017 40.0 7.1 63 370-432 817-882 (1010)
111 2v1x_A ATP-dependent DNA helic 34.6 37 0.0013 38.4 5.4 60 190-256 83-144 (591)
112 1fuu_A Yeast initiation factor 34.2 99 0.0034 31.9 8.5 82 182-271 80-167 (394)
113 3ly5_A ATP-dependent RNA helic 34.0 1.2E+02 0.0041 29.7 8.7 75 190-271 125-206 (262)
114 2i4i_A ATP-dependent RNA helic 34.0 1.5E+02 0.0052 30.8 10.1 73 192-271 102-180 (417)
115 2db3_A ATP-dependent RNA helic 33.9 1.2E+02 0.0043 32.2 9.4 74 191-271 129-208 (434)
116 3mwy_W Chromo domain-containin 32.6 12 0.0004 44.2 0.9 38 14-61 367-405 (800)
117 1q0u_A Bstdead; DEAD protein, 32.5 62 0.0021 30.7 6.0 71 182-256 63-134 (219)
118 4ddu_A Reverse gyrase; topoiso 30.1 37 0.0013 41.5 4.7 63 190-256 120-182 (1104)
119 1s2m_A Putative ATP-dependent 29.3 1.8E+02 0.006 30.1 9.5 75 190-271 88-168 (400)
120 1njg_A DNA polymerase III subu 29.1 48 0.0017 31.3 4.6 43 11-60 123-165 (250)
121 1oyw_A RECQ helicase, ATP-depe 27.9 41 0.0014 37.2 4.3 59 191-256 65-123 (523)
122 3te6_A Regulatory protein SIR3 27.2 61 0.0021 33.4 5.1 45 13-63 131-175 (318)
123 2j0s_A ATP-dependent RNA helic 26.5 1.3E+02 0.0045 31.3 7.9 76 189-271 103-184 (410)
124 1xti_A Probable ATP-dependent 25.8 1.4E+02 0.0047 30.8 7.8 62 190-256 75-136 (391)
125 1w36_D RECD, exodeoxyribonucle 25.1 40 0.0014 38.2 3.6 37 14-60 262-298 (608)
126 4a4z_A Antiviral helicase SKI2 25.0 1E+02 0.0036 37.1 7.3 74 11-90 144-223 (997)
127 3im1_A Protein SNU246, PRE-mRN 24.2 65 0.0022 33.3 4.7 46 383-428 1-49 (328)
128 2pl3_A Probable ATP-dependent 23.5 1.2E+02 0.0041 28.9 6.3 59 190-256 96-154 (236)
129 2orw_A Thymidine kinase; TMTK, 21.8 85 0.0029 29.2 4.6 40 13-62 75-114 (184)
130 3u5c_T 40S ribosomal protein S 21.7 52 0.0018 29.7 2.8 31 368-398 97-131 (144)
131 1sxj_A Activator 1 95 kDa subu 20.4 78 0.0027 34.9 4.6 48 13-66 147-194 (516)
132 3eiq_A Eukaryotic initiation f 20.1 3E+02 0.01 28.3 9.2 83 183-271 100-188 (414)
No 1
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.9e-88 Score=805.21 Aligned_cols=521 Identities=30% Similarity=0.496 Sum_probs=449.3
Q ss_pred cccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCCc
Q 047202 2 NFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEGR 81 (735)
Q Consensus 2 ~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~gr 81 (735)
+.|.++.++.+.++++|||||+|+|++++|+++++++.+...+ +++++|+||||++.+.|++||+++|++.++|+
T Consensus 196 l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-----~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr 270 (773)
T 2xau_A 196 LLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-----PDLKIIIMSATLDAEKFQRYFNDAPLLAVPGR 270 (773)
T ss_dssp HHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-----TTCEEEEEESCSCCHHHHHHTTSCCEEECCCC
T ss_pred HHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC-----CCceEEEEeccccHHHHHHHhcCCCcccccCc
Confidence 4567788999999999999999999999999999999998766 57999999999999999999999999999999
Q ss_pred eecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHH
Q 047202 82 THPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQT 161 (735)
Q Consensus 82 ~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (735)
.|||+.+|..... ..|
T Consensus 271 ~~pv~~~~~~~~~------------------------------------------------------------~~~---- 286 (773)
T 2xau_A 271 TYPVELYYTPEFQ------------------------------------------------------------RDY---- 286 (773)
T ss_dssp CCCEEEECCSSCC------------------------------------------------------------SCH----
T ss_pred ccceEEEEecCCc------------------------------------------------------------hhH----
Confidence 9999998875310 000
Q ss_pred HHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhc----cCCCCCcEEEEecCCCCHHHH
Q 047202 162 RQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYR----FGGPSSDWLLALHSSVASVDQ 237 (735)
Q Consensus 162 ~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~----~~~~~~~~i~~LHs~l~~~eq 237 (735)
.+.....+..++...++|++|||+||+++|+.+++.|..... .....++.+.++||+|++++|
T Consensus 287 -------------~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR 353 (773)
T 2xau_A 287 -------------LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQ 353 (773)
T ss_dssp -------------HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHH
T ss_pred -------------HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHH
Confidence 011223444555556789999999999999999999875210 011235789999999999999
Q ss_pred HHhcCCCC-----CCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC
Q 047202 238 KKVFLRPP-----EKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP 312 (735)
Q Consensus 238 ~~vf~~~~-----~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~ 312 (735)
.++|+.++ +|.+|||||||+||+|||||+|++|||+|++|++.||+..+++.|.+.|+|++++.||+|||||.++
T Consensus 354 ~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~ 433 (773)
T 2xau_A 354 QRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP 433 (773)
T ss_dssp GGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSS
T ss_pred HHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCC
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEceehhhHhhhcCCCCCCcccccchHHHHHHHHHcCCCchhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCC
Q 047202 313 GICYSLYTRHRYEKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELT 392 (735)
Q Consensus 313 G~c~rL~t~~~~~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT 392 (735)
|.||+||++.+|...+.+++.|||+|.+|++++|++|.+|++++..| .|++||+.+++..|++.|..+||||.+|+||
T Consensus 434 G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f--~~~~~p~~~~i~~a~~~L~~lgald~~~~lT 511 (773)
T 2xau_A 434 GKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHF--DFMDPPAPETMMRALEELNYLACLDDEGNLT 511 (773)
T ss_dssp EEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGC--CCSSCCCHHHHHHHHHHHHHTTSBCTTSCBC
T ss_pred CEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhc--cccCCCcHHHHHHHHHHHHHcCCcccCCCcC
Confidence 99999999999966578999999999999999999999999999988 8999999999999999999999999999999
Q ss_pred HhhhhhccCCCchHHHHHHHhhcccCChhHHHHHHhhhccCCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCc
Q 047202 393 PLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSD 472 (735)
Q Consensus 393 ~lG~~l~~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sD 472 (735)
++|+.|+.||++|++||||+.|+.++|++++++|||+|++++||+.|.+.+++++.+|..|. ...||
T Consensus 512 ~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~-------------~~~~D 578 (773)
T 2xau_A 512 PLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFA-------------HPDGD 578 (773)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTC-------------CTTBH
T ss_pred hhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhcc-------------CCCCc
Confidence 99999999999999999999999999999999999999999999999998888888888773 36799
Q ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCcccccc
Q 047202 473 HLVLMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRDMRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDE 552 (735)
Q Consensus 473 hl~~l~~y~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~ 552 (735)
|++++++|++|.+.... + ....+||++||||+++|+++.++|.||.++|...|+.....
T Consensus 579 ~~~~l~~~~~~~~~~~~-~-~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~------------------- 637 (773)
T 2xau_A 579 HITLLNVYHAFKSDEAY-E-YGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTT------------------- 637 (773)
T ss_dssp HHHHHHHHHHHTSHHHH-H-HCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHhccc-c-chHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCC-------------------
Confidence 99999999999753211 0 11268999999999999999999999999999988732110
Q ss_pred cccccccCCcHHHHHHHHHHhcccchhccccccccccccccccccccccCCCceeecCcceEEEccCCcccccccCCCCe
Q 047202 553 SQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLRKSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPF 632 (735)
Q Consensus 553 ~~~~n~~s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~ 632 (735)
..+ ...++..|+++||+|||||||+.... + ..+....+...|+|||+|+++. .++|
T Consensus 638 --~~~-~~~~~~~i~~~l~~g~~~~~a~~~~~---~--------------~~y~~~~~~~~~~ihp~s~l~~----~~~~ 693 (773)
T 2xau_A 638 --DYE-SPKYFDNIRKALASGFFMQVAKKRSG---A--------------KGYITVKDNQDVLIHPSTVLGH----DAEW 693 (773)
T ss_dssp --CTT-STTHHHHHHHHHHHHHTTSEEEECCC-------------------CEEETTTCCEEEECTTCCCCT----TCSE
T ss_pred --CCC-chhhHHHHHHHHHHhChHhheeeccC---C--------------CcceEeeCCCEEEECCCcccCC----CCCE
Confidence 001 12356789999999999999987532 0 0011222345799999999953 3799
Q ss_pred EEEEeecccCcceeecCCCcChHHHHHhcCce
Q 047202 633 LVFLEKVETNKVFLRDTTIVSPFSILLFGGSI 664 (735)
Q Consensus 633 lvy~e~~~t~k~~lr~~T~V~p~~llLfgg~l 664 (735)
|||+|++.|++.|||++|.|+|.||.-+++..
T Consensus 694 ~v~~e~~~t~~~~~~~~~~i~~~~l~~~~~~~ 725 (773)
T 2xau_A 694 VIYNEFVLTSKNYIRTVTSVRPEWLIEIAPAY 725 (773)
T ss_dssp EEEEEEEESSSEEEEEEEECCHHHHHHHCTTT
T ss_pred EEEEEeeccchhheeecccCCHHHHHHHHHHh
Confidence 99999999999999999999999999988764
No 2
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=100.00 E-value=3e-48 Score=402.87 Aligned_cols=244 Identities=24% Similarity=0.423 Sum_probs=202.9
Q ss_pred chhHhhhhcCCCChHHHHHHHHHHHHHcCCCCCCCCCCHhhhhhccCCCchHHHHHHHhhcccCChhHHHHHHhhhccCC
Q 047202 355 RIKIFLSKALEPPKEEAITTAISVLYEVGAIEGDEELTPLGHHLAKLPVDVLIGKMMLFGGIFGCLSPILSISAFLSYKS 434 (735)
Q Consensus 355 ~~~~fl~~~l~pP~~~~i~~a~~~L~~lgal~~~~~lT~lG~~l~~lp~~p~~~k~l~~~~~~~c~~~~l~iaa~ls~~~ 434 (735)
+...+|..++|||+.+++.+|++.|..+||||.+|+||++|+.|++||+||++||||+.|+.+||++++++|||+||+++
T Consensus 3 ~~~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~ 82 (270)
T 3i4u_A 3 DRGPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 82 (270)
T ss_dssp -----------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred CchhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCc
Confidence 34445544599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHhCchHHHHHHHHhcCCHHHHHHHHH
Q 047202 435 PFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQSDHLVLMVAYKKWQKILLKRGTKAAQQFCSKYFLSSSVMYMIRD 514 (735)
Q Consensus 435 ~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~sDhl~~l~~y~~w~~~~~~~~~~~~~~~C~~~~Ls~~~l~~i~~ 514 (735)
||..|.+.+++++.+|.+|. +..|||++++|+|++|.+. + ..++||++||||+++|+++.+
T Consensus 83 ~f~~p~~~~~~a~~~~~~f~-------------~~~sD~ltlLn~~~~~~~~----~--~~~~wC~~~fL~~~~l~~~~~ 143 (270)
T 3i4u_A 83 VFYRPKDKQALADQKKAKFH-------------QTEGDHLTLLAVYNSWKNN----K--FSNPWCYENFIQARSLRRAQD 143 (270)
T ss_dssp CBCCCGGGHHHHHHHHHTTC-------------BTTBHHHHHHHHHHHHHHT----T--TCHHHHHHTTBCHHHHHHHHH
T ss_pred cccCCchhHHHHHHHHHHcc-------------CCCChHHHHHHHHHHHHHc----C--chhhHHHHhcCCHHHHHHHHH
Confidence 99999999888888888773 2679999999999999752 1 246899999999999999999
Q ss_pred HHHHHHHHHHHcCCccCCCCCcCCCCCCCCCCcccccccccccccCCcHHHHHHHHHHhcccchhccccccccccccccc
Q 047202 515 MRIQFGTLLADIGLINLPNKNQTGGKKKDDLDSWFSDESQMFNMYANHSSIVKAILCAGLYPNVAATEQGVAGAALSNLR 594 (735)
Q Consensus 515 ~r~Ql~~~L~~~g~i~~~~~~~~~g~~~~~~~~~~~~~~~~~n~~s~~~~lika~L~aGlypnvA~~~~~~~~~~~~~~~ 594 (735)
+|+||.++|++.|+... ..+.+...|+++||+|||||||+.+.. +
T Consensus 144 ir~QL~~~l~~~~~~~~--------------------------s~~~~~~~i~~~L~aG~~~nvA~~~~~---~------ 188 (270)
T 3i4u_A 144 IRKQMLGIMDRHKLDVV--------------------------SCGKSTVRVQKAICSGFFRNAAKKDPQ---E------ 188 (270)
T ss_dssp HHHHHHHHHHHTTCCCC--------------------------CCTTCTHHHHHHHHHHHGGGEEEECSS---S------
T ss_pred HHHHHHHHHHHcCCCcC--------------------------CCcchHHHHHHHHHHHhHHHHheeCCC---C------
Confidence 99999999998876211 012245689999999999999987531 0
Q ss_pred cccccccCCCceeecCcceEEEccCCcccccccCCCCeEEEEeecccCcceeecCCCcChHHHHHhcCce
Q 047202 595 KSSNSAAKAHPVWYDGRREVHIHPSSINSQLKSFEHPFLVFLEKVETNKVFLRDTTIVSPFSILLFGGSI 664 (735)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~v~iHPsSv~~~~~~~~~~~lvy~e~~~t~k~~lr~~T~V~p~~llLfgg~l 664 (735)
.| ....++..|+|||||++++. +++||||+|+++|+|.|||+||.|+|.||..+++.+
T Consensus 189 --------~Y-~~~~~~~~v~iHPsS~L~~~---~p~wvvy~Elv~Tsk~y~r~vt~I~p~wL~~~ap~~ 246 (270)
T 3i4u_A 189 --------GY-RTLIDQQVVYIHPSSALFNR---QPEWVVYHELVLTTKEYMREVTTIDPRWLVEFAPAF 246 (270)
T ss_dssp --------SE-EETTTCCEEEECTTSTTTTS---CCSEEEEEEEEESSSEEEEEEEECCHHHHHHHCTTT
T ss_pred --------ce-EEccCCCEEEECchhhhcCC---CCCEEEEEehhhhhHhHHHhccccCHHHHHHHhHHH
Confidence 11 11223457999999999863 589999999999999999999999999999999764
No 3
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.5e-41 Score=398.63 Aligned_cols=431 Identities=16% Similarity=0.149 Sum_probs=284.9
Q ss_pred cccccCCC-CCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCCCCeEeeCCc
Q 047202 4 CYLQGDKN-LTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGDCPVITAEGR 81 (735)
Q Consensus 4 ~~l~~d~~-L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~~pvi~i~gr 81 (735)
+.+..++. ++++++|||||+|+.+ .+.....++.++.+. +++|+|+||||+ |++.|++||+ ++++..++|
T Consensus 134 ~~~~~~~~~l~~~~~vIiDE~H~l~--~~~~~~~l~~i~~~~-----~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r 205 (715)
T 2va8_A 134 SLWRHRPEWLNEVNYFVLDELHYLN--DPERGPVVESVTIRA-----KRRNLLALSATISNYKQIAKWLG-AEPVATNWR 205 (715)
T ss_dssp HHHHHCCGGGGGEEEEEECSGGGGG--CTTTHHHHHHHHHHH-----HTSEEEEEESCCTTHHHHHHHHT-CEEEECCCC
T ss_pred HHHhCChhHhhccCEEEEechhhcC--CcccchHHHHHHHhc-----ccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCC
Confidence 34455665 8999999999999853 112233445555444 268999999999 5899999997 788899999
Q ss_pred eecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHH
Q 047202 82 THPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQT 161 (735)
Q Consensus 82 ~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (735)
.+|+..++..+......+. . .|.....
T Consensus 206 ~~~l~~~~~~~~~~~~~~~----------------------------~------------------~~~~~~~------- 232 (715)
T 2va8_A 206 PVPLIEGVIYPERKKKEYN----------------------------V------------------IFKDNTT------- 232 (715)
T ss_dssp SSCEEEEEEEECSSTTEEE----------------------------E------------------EETTSCE-------
T ss_pred CCCceEEEEecCCccccee----------------------------e------------------ecCcchh-------
Confidence 9999877653210000000 0 0000000
Q ss_pred HHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhcc---C---------------CC---
Q 047202 162 RQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRF---G---------------GP--- 220 (735)
Q Consensus 162 ~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~---~---------------~~--- 220 (735)
.... ..+.+..++..+.. ++|++|||+||+++++.+++.|...... . ..
T Consensus 233 ----~~~~----~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 302 (715)
T 2va8_A 233 ----KKVH----GDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSD 302 (715)
T ss_dssp ----EEEE----SSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHH
T ss_pred ----hhcc----cchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhcccc
Confidence 0000 00112233333333 5789999999999999999998754210 0 00
Q ss_pred --------CCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCccccee
Q 047202 221 --------SSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVE 292 (735)
Q Consensus 221 --------~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~ 292 (735)
.+..|.++||+|++++|+.+++.+++|.+|||||||++|+|||||++++|||+ ...||+..+.. .
T Consensus 303 ~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~ 375 (715)
T 2va8_A 303 EKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---Y 375 (715)
T ss_dssp HHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C--------------
T ss_pred ccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---C
Confidence 01248999999999999999999999999999999999999999999999997 46688765443 6
Q ss_pred EeehHhhHHHhcCcCCCCC---CcEEEEceehhh-HhhhcC--CCCCCcccccchHH------HHHHHHHcCCC----ch
Q 047202 293 DWISQANARQRRGRAGRVK---PGICYSLYTRHR-YEKLMR--PYQVPEMQRMPLVE------LCLQIKLLSLG----RI 356 (735)
Q Consensus 293 ~~iSkasa~QR~GRAGR~~---~G~c~rL~t~~~-~~~~~~--~~~~PEi~r~~L~~------l~L~~k~l~~~----~~ 356 (735)
.|+|++++.||+|||||.+ +|.||++|++.. +...++ -...||+.+++|.. .+|.++.+|.. ++
T Consensus 376 ~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~ 455 (715)
T 2va8_A 376 DEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQL 455 (715)
T ss_dssp ---CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHH
T ss_pred CcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHH
Confidence 8999999999999999998 899999998765 332221 24679999998765 56677777632 45
Q ss_pred hHhhh-hcCC-CChHHHHHHHHHHHHHcCCCCCCC---CCCHhhhhhccCCCchHHHHHHHhhccc---CChhHHHHHHh
Q 047202 357 KIFLS-KALE-PPKEEAITTAISVLYEVGAIEGDE---ELTPLGHHLAKLPVDVLIGKMMLFGGIF---GCLSPILSISA 428 (735)
Q Consensus 357 ~~fl~-~~l~-pP~~~~i~~a~~~L~~lgal~~~~---~lT~lG~~l~~lp~~p~~~k~l~~~~~~---~c~~~~l~iaa 428 (735)
.+|+. .|+. +|+...++.|++.|..+|+|+.++ .+|++|+.++.+|++|+.+++++.+... .|..+++.|.|
T Consensus 456 ~~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 535 (715)
T 2va8_A 456 ENFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLA 535 (715)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhh
Confidence 55554 2332 556677999999999999998764 8999999999999999999999999988 79999999888
Q ss_pred hhc-cCCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCC----C---cHHHHHHHHHHHHHHHHHhCchHHHHHHH
Q 047202 429 FLS-YKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQ----S---DHLVLMVAYKKWQKILLKRGTKAAQQFCS 500 (735)
Q Consensus 429 ~ls-~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~----s---Dhl~~l~~y~~w~~~~~~~~~~~~~~~C~ 500 (735)
+.+ ..++|+++.+.. .. +..+. +.... .+...... . .|+-..-+.+.|.+ ......+|+
T Consensus 536 ~~~e~~~~~~r~~e~~-~l---~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~------~~~~~~i~~ 602 (715)
T 2va8_A 536 FTPDGPLVSVGRNEEE-EL---IELLE-DLDCE--LLIEEPYEEDEYSLYINALKVALIMKDWMD------EVDEDTILS 602 (715)
T ss_dssp HSTTSCCCCCCHHHHH-HH---HHHHT-TCSSC--CSSCCCSSHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHH
T ss_pred cCcccccCccChHHHH-HH---HHHHH-hcchh--hcccccccccchhhhHHHHHHHHHHHHHHc------CCCHHHHHH
Confidence 766 577877764332 11 11111 00000 00000001 1 23333444555642 123457899
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHH
Q 047202 501 KYFLSSSVMYMIRDMRIQFGTLLAD 525 (735)
Q Consensus 501 ~~~Ls~~~l~~i~~~r~Ql~~~L~~ 525 (735)
++++...-++.+.+.-..|...+.+
T Consensus 603 ~y~~~~gdl~~l~~~a~~l~~a~~~ 627 (715)
T 2va8_A 603 KYNIGSGDLRNMVETMDWLTYSAYH 627 (715)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCChhhHHHHHHHHHHHHHHHHH
Confidence 9999877777776665555554443
No 4
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1e-39 Score=386.77 Aligned_cols=419 Identities=17% Similarity=0.178 Sum_probs=294.4
Q ss_pred ccccCCC-CCCccEEEEccccc-----CCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCC-hHHHHhhhCCCCeEe
Q 047202 5 YLQGDKN-LTGVTHVIVDEVHE-----RSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVD-SNLFSRYFGDCPVIT 77 (735)
Q Consensus 5 ~l~~d~~-L~~~s~vIiDEvHE-----R~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~-~~~f~~yF~~~pvi~ 77 (735)
.+..++. ++++++|||||+|+ |+...|.++..++.. + +++|+|+||||++ .+.|++||+ ++++.
T Consensus 128 ~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~---~-----~~~~ii~lSATl~n~~~~~~~l~-~~~~~ 198 (702)
T 2p6r_A 128 LIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---N-----KALRVIGLSATAPNVTEIAEWLD-ADYYV 198 (702)
T ss_dssp HHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH---C-----TTCEEEEEECCCTTHHHHHHHTT-CEEEE
T ss_pred HHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc---C-----cCceEEEECCCcCCHHHHHHHhC-CCccc
Confidence 3444555 89999999999998 998999988887753 2 5799999999995 899999997 78899
Q ss_pred eCCceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCc
Q 047202 78 AEGRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSY 157 (735)
Q Consensus 78 i~gr~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (735)
.++|.+|++.++.... ...+. .+.. .
T Consensus 199 ~~~r~~~l~~~~~~~~--~~~~~-----------------------~~~~----------------------------~- 224 (702)
T 2p6r_A 199 SDWRPVPLVEGVLCEG--TLELF-----------------------DGAF----------------------------S- 224 (702)
T ss_dssp CCCCSSCEEEEEECSS--EEEEE-----------------------ETTE----------------------------E-
T ss_pred CCCCCccceEEEeeCC--eeecc-----------------------Ccch----------------------------h-
Confidence 9999999987664210 00000 0000 0
Q ss_pred cHHHHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhcc-CCC-----------C----
Q 047202 158 SEQTRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRF-GGP-----------S---- 221 (735)
Q Consensus 158 ~~~~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~-~~~-----------~---- 221 (735)
....++ +..++..... ++|++|||+|++++++.+++.|...... -.. .
T Consensus 225 -----------~~~~~~---~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~ 288 (702)
T 2p6r_A 225 -----------TSRRVK---FEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMS 288 (702)
T ss_dssp -----------EEEECC---HHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHH
T ss_pred -----------hhhhhh---HHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhcccccc
Confidence 000000 1222333322 5789999999999999999888653110 000 0
Q ss_pred -------CcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEe
Q 047202 222 -------SDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDW 294 (735)
Q Consensus 222 -------~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~ 294 (735)
+..+.++||+|++++|+.+++.+++|.+|||||||++|+|||||++++|||+ ...|| +. ..|
T Consensus 289 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~ 357 (702)
T 2p6r_A 289 RKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKR 357 (702)
T ss_dssp HHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEE
T ss_pred HHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCc
Confidence 1247889999999999999999999999999999999999999999999997 56687 21 689
Q ss_pred ehHhhHHHhcCcCCCCC---CcEEEEceehhhHhhhcC--CCCCCcccccchHH------HHHHHHHcCCC----chhHh
Q 047202 295 ISQANARQRRGRAGRVK---PGICYSLYTRHRYEKLMR--PYQVPEMQRMPLVE------LCLQIKLLSLG----RIKIF 359 (735)
Q Consensus 295 iSkasa~QR~GRAGR~~---~G~c~rL~t~~~~~~~~~--~~~~PEi~r~~L~~------l~L~~k~l~~~----~~~~f 359 (735)
+|.+++.||+|||||.+ +|.||+++++..++..+. -+..||+.+++|.. .+|.....|.. ++.+|
T Consensus 358 ~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~ 437 (702)
T 2p6r_A 358 IKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDF 437 (702)
T ss_dssp CCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHH
T ss_pred CCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999998 899999999988765332 24679999988764 45666666632 34444
Q ss_pred hhh-cC----CCChHHHHHHHHHHHHHcCCCCCC--CCCCHhhhhhccCCCchHHHHHHHhhccc--CChhHHHHHHhhh
Q 047202 360 LSK-AL----EPPKEEAITTAISVLYEVGAIEGD--EELTPLGHHLAKLPVDVLIGKMMLFGGIF--GCLSPILSISAFL 430 (735)
Q Consensus 360 l~~-~l----~pP~~~~i~~a~~~L~~lgal~~~--~~lT~lG~~l~~lp~~p~~~k~l~~~~~~--~c~~~~l~iaa~l 430 (735)
+.. |+ .+|..+.++.|++.|...|+|+.+ +.+|++|+.++.+|++|..+++++.+... .|..+++.|.|+.
T Consensus 438 l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 517 (702)
T 2p6r_A 438 FADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRT 517 (702)
T ss_dssp HHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHS
T ss_pred HHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCC
Confidence 432 21 378889999999999999999977 78999999999999999999999999988 8999999998877
Q ss_pred c-cCCCcccCcchhHHHHHHHHHHhhhhhccCCCCCCCCCCC---cHHHHHHHHHHHHHHHHHhCchHHHHHHHHhcCCH
Q 047202 431 S-YKSPFIYPKDEKQNVERAKLALLTDKLEGLSDSNDSSTQS---DHLVLMVAYKKWQKILLKRGTKAAQQFCSKYFLSS 506 (735)
Q Consensus 431 s-~~~~f~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~s---Dhl~~l~~y~~w~~~~~~~~~~~~~~~C~~~~Ls~ 506 (735)
+ ..+.++++.+ +.....-.... ........+... ... .|+-..-+.+.|.+ + ......|+++++..
T Consensus 518 ~e~~~i~~r~~e--~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~k~~~lL~~~~~-----~-~~l~~i~~~~~~~~ 587 (702)
T 2p6r_A 518 PDMERLTVRKTD--SWVEEEAFRLR-KELSYYPSDFSV-EYDWFLSEVKTALCLKDWIE-----E-KDEDEICAKYGIAP 587 (702)
T ss_dssp TTSCCCCCCTTT--HHHHHHHHHHG-GGSSCCCCTTST-THHHHHHHHHHHHHHHHHHT-----T-CCHHHHHHHTTCCH
T ss_pred cccccCCCCCch--HHHHHHHHhcc-ccccCCcchhhh-hhhhhhhhHHHHHHHHHHHc-----C-CChHHHHHHhCCcH
Confidence 6 3667777765 22221111110 011000000000 011 34444556666753 1 23456788888876
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047202 507 SVMYMIRDMRIQFGTLL 523 (735)
Q Consensus 507 ~~l~~i~~~r~Ql~~~L 523 (735)
.-++.+.+.-..+.+.+
T Consensus 588 gdl~~i~~~a~~l~~a~ 604 (702)
T 2p6r_A 588 GDLRRIVETAEWLSNAM 604 (702)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 66665555444444433
No 5
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=2.4e-36 Score=358.91 Aligned_cols=341 Identities=18% Similarity=0.124 Sum_probs=249.0
Q ss_pred cCCC-CCCccEEEEcccc-----cCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCCCCeEeeCC
Q 047202 8 GDKN-LTGVTHVIVDEVH-----ERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGDCPVITAEG 80 (735)
Q Consensus 8 ~d~~-L~~~s~vIiDEvH-----ER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~~pvi~i~g 80 (735)
.++. ++++++|||||+| +|+..++.++..++ +++|+|+||||+ |++.+++||+ ++.+..++
T Consensus 131 ~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-----------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~ 198 (720)
T 2zj8_A 131 HGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML-----------GKAQIIGLSATIGNPEELAEWLN-AELIVSDW 198 (720)
T ss_dssp HTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB-----------TTBEEEEEECCCSCHHHHHHHTT-EEEEECCC
T ss_pred cChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh-----------cCCeEEEEcCCcCCHHHHHHHhC-CcccCCCC
Confidence 3444 8999999999999 89988888877665 148999999999 7899999996 66788888
Q ss_pred ceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHH
Q 047202 81 RTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQ 160 (735)
Q Consensus 81 r~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (735)
|.+|++.++..+. ...+. .+..
T Consensus 199 rp~~l~~~~~~~~--~~~~~-----------------------~~~~--------------------------------- 220 (720)
T 2zj8_A 199 RPVKLRRGVFYQG--FVTWE-----------------------DGSI--------------------------------- 220 (720)
T ss_dssp CSSEEEEEEEETT--EEEET-----------------------TSCE---------------------------------
T ss_pred CCCcceEEEEeCC--eeecc-----------------------ccch---------------------------------
Confidence 9888887653210 00000 0000
Q ss_pred HHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhcc--C------------C-------
Q 047202 161 TRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRF--G------------G------- 219 (735)
Q Consensus 161 ~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~--~------------~------- 219 (735)
..... +..++.++.. +++++|||+|++++++.+++.|...... . .
T Consensus 221 ------~~~~~------~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 286 (720)
T 2zj8_A 221 ------DRFSS------WEELVYDAIR--KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTN 286 (720)
T ss_dssp ------EECSS------TTHHHHHHHH--TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHH
T ss_pred ------hhhhH------HHHHHHHHHh--CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccch
Confidence 00000 0122222222 5689999999999999999888653110 0 0
Q ss_pred -----CCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEe
Q 047202 220 -----PSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDW 294 (735)
Q Consensus 220 -----~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~ 294 (735)
.-+..|.++||+|++++|+.+++.++.|.++||||||++|+|||||++++||+++ ..|| ..+ ..|
T Consensus 287 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~ 356 (720)
T 2zj8_A 287 EKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MER 356 (720)
T ss_dssp HHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEE
T ss_pred HHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----Ccc
Confidence 0012389999999999999999999999999999999999999999999999965 4566 222 378
Q ss_pred ehHhhHHHhcCcCCCCC---CcEEEEceehhhHhhh---cCCCCCCccccc-----chHHHHHHHHHcCCC----chhHh
Q 047202 295 ISQANARQRRGRAGRVK---PGICYSLYTRHRYEKL---MRPYQVPEMQRM-----PLVELCLQIKLLSLG----RIKIF 359 (735)
Q Consensus 295 iSkasa~QR~GRAGR~~---~G~c~rL~t~~~~~~~---~~~~~~PEi~r~-----~L~~l~L~~k~l~~~----~~~~f 359 (735)
+|.+++.||+|||||.+ +|.||.++++..++.. +.....+++... .|...++.....+.. ++.+|
T Consensus 357 ~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~ 436 (720)
T 2zj8_A 357 IPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKF 436 (720)
T ss_dssp CCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred CCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999987 7999999998764321 222233333322 233445555555532 34444
Q ss_pred hhh-cC------CCChHHHHHHHHHHHHHcCCCC-CCC---CCCHhhhhhccCCCchHHHHHHHhhccc----CChhHHH
Q 047202 360 LSK-AL------EPPKEEAITTAISVLYEVGAIE-GDE---ELTPLGHHLAKLPVDVLIGKMMLFGGIF----GCLSPIL 424 (735)
Q Consensus 360 l~~-~l------~pP~~~~i~~a~~~L~~lgal~-~~~---~lT~lG~~l~~lp~~p~~~k~l~~~~~~----~c~~~~l 424 (735)
+.. |+ ++|..+.+..|++.|...|+|+ .++ .+|++|+.++.+|++|..+++++.+... +|..+++
T Consensus 437 l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 516 (720)
T 2zj8_A 437 ISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIF 516 (720)
T ss_dssp HHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHH
Confidence 322 21 3344578999999999999998 655 7999999999999999999999999887 8999999
Q ss_pred HHHhhhcc-CCCcccCcch
Q 047202 425 SISAFLSY-KSPFIYPKDE 442 (735)
Q Consensus 425 ~iaa~ls~-~~~f~~~~~~ 442 (735)
.|+|+.+. .+.|+++.+.
T Consensus 517 ~i~~~~~e~~~i~~r~~e~ 535 (720)
T 2zj8_A 517 HLISLTPDITPFNYSKREF 535 (720)
T ss_dssp HHHHTSTTCCCCCCCHHHH
T ss_pred HHhccCccccccccCHHHH
Confidence 99998874 7788776543
No 6
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=8e-29 Score=278.67 Aligned_cols=209 Identities=18% Similarity=0.165 Sum_probs=155.6
Q ss_pred cccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCCc
Q 047202 2 NFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEGR 81 (735)
Q Consensus 2 ~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~gr 81 (735)
+.+++..++.++++++|||||||+++..+++.+++++..... ++.++|+||||++.+...-...+.|++.++.
T Consensus 100 l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~------~~~~~il~SAT~~~~~~~~~~~~~pi~~~~~- 172 (459)
T 2z83_A 100 LTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVEL------GEAAAIFMTATPPGTTDPFPDSNAPIHDLQD- 172 (459)
T ss_dssp HHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHT------TSCEEEEECSSCTTCCCSSCCCSSCEEEEEC-
T ss_pred HHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhcc------CCccEEEEEcCCCcchhhhccCCCCeEEecc-
Confidence 346778889999999999999999999999999998886642 4689999999997542111112233332210
Q ss_pred eecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHH
Q 047202 82 THPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQT 161 (735)
Q Consensus 82 ~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (735)
.+|.. .+ .
T Consensus 173 ~~~~~-------------------------------------------------------------~~-----~------ 180 (459)
T 2z83_A 173 EIPDR-------------------------------------------------------------AW-----S------ 180 (459)
T ss_dssp CCCSS-------------------------------------------------------------CC-----S------
T ss_pred cCCcc-------------------------------------------------------------hh-----H------
Confidence 00000 00 0
Q ss_pred HHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhc
Q 047202 162 RQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVF 241 (735)
Q Consensus 162 ~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf 241 (735)
..+ .. +.+ ..|.+|||+|++++++.+.+.|... ++.+..+||. +|.+++
T Consensus 181 -----------~~~----~~---l~~--~~~~~LVF~~s~~~~~~l~~~L~~~-------g~~v~~lh~~----~R~~~~ 229 (459)
T 2z83_A 181 -----------SGY----EW---ITE--YAGKTVWFVASVKMGNEIAMCLQRA-------GKKVIQLNRK----SYDTEY 229 (459)
T ss_dssp -----------SCC----HH---HHH--CCSCEEEECSCHHHHHHHHHHHHHT-------TCCEEEESTT----CCCCCG
T ss_pred -----------HHH----HH---HHh--cCCCEEEEeCChHHHHHHHHHHHhc-------CCcEEecCHH----HHHHHH
Confidence 000 11 111 3689999999999999999999765 4679999984 788899
Q ss_pred CCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccc---eeEeehHhhHHHhcCcCCCCC--CcEEE
Q 047202 242 LRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSM---VEDWISQANARQRRGRAGRVK--PGICY 316 (735)
Q Consensus 242 ~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l---~~~~iSkasa~QR~GRAGR~~--~G~c~ 316 (735)
+.++.|..+||||||++|+|||||+ ++|||+|+.+.+.|+. .+...+ -..|.|++++.||+|||||.+ +|.||
T Consensus 230 ~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~-~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~ 307 (459)
T 2z83_A 230 PKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILE-EGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEY 307 (459)
T ss_dssp GGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEEC-SSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEE
T ss_pred hhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccc-ccccccccccCCCCCHHHHHHhccccCCCCCCCCeEE
Confidence 9999999999999999999999999 9999999998887652 333444 349999999999999999987 89999
Q ss_pred Eceehh
Q 047202 317 SLYTRH 322 (735)
Q Consensus 317 rL~t~~ 322 (735)
.+++..
T Consensus 308 ~~~~~~ 313 (459)
T 2z83_A 308 HYGGAT 313 (459)
T ss_dssp EECSCC
T ss_pred EEEccc
Confidence 999875
No 7
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.94 E-value=4.5e-27 Score=263.90 Aligned_cols=207 Identities=17% Similarity=0.148 Sum_probs=162.2
Q ss_pred cccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEeeCCc
Q 047202 2 NFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITAEGR 81 (735)
Q Consensus 2 ~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i~gr 81 (735)
+.+++..++.+.++++|||||+|+++...+.++.++..... .++.++|+||||++.+....++++++++.++ +
T Consensus 98 l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~~------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~ 170 (451)
T 2jlq_A 98 FTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE------MGEAAAIFMTATPPGSTDPFPQSNSPIEDIE-R 170 (451)
T ss_dssp HHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHHH------TTSCEEEEECSSCTTCCCSSCCCSSCEEEEE-C
T ss_pred HHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHhhc------CCCceEEEEccCCCccchhhhcCCCceEecC-c
Confidence 34667788999999999999999998888887777754332 1579999999999876655555556655553 2
Q ss_pred eecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHH
Q 047202 82 THPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQT 161 (735)
Q Consensus 82 ~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (735)
.+|... |.
T Consensus 171 ~~p~~~-~~----------------------------------------------------------------------- 178 (451)
T 2jlq_A 171 EIPERS-WN----------------------------------------------------------------------- 178 (451)
T ss_dssp CCCSSC-CS-----------------------------------------------------------------------
T ss_pred cCCchh-hH-----------------------------------------------------------------------
Confidence 222110 00
Q ss_pred HHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhc
Q 047202 162 RQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVF 241 (735)
Q Consensus 162 ~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf 241 (735)
. ++..+.+ ..|.+|||+|+.++++.+.+.|... ++.+..+||.+ +++++
T Consensus 179 -----------~-------~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~-------g~~~~~lh~~~----~~~~~ 227 (451)
T 2jlq_A 179 -----------T-------GFDWITD--YQGKTVWFVPSIKAGNDIANCLRKS-------GKRVIQLSRKT----FDTEY 227 (451)
T ss_dssp -----------S-------SCHHHHH--CCSCEEEECSSHHHHHHHHHHHHTT-------TCCEEEECTTT----HHHHG
T ss_pred -----------H-------HHHHHHh--CCCCEEEEcCCHHHHHHHHHHHHHc-------CCeEEECCHHH----HHHHH
Confidence 0 0001111 3679999999999999999999764 46688999976 45788
Q ss_pred CCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCccccee---EeehHhhHHHhcCcCCCCC--CcEEE
Q 047202 242 LRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVE---DWISQANARQRRGRAGRVK--PGICY 316 (735)
Q Consensus 242 ~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~---~~iSkasa~QR~GRAGR~~--~G~c~ 316 (735)
+.++.|..+|+|||+++|+|||||+ ++|||+|+.+...|| ..+...+.. .|.|.+++.||+|||||.+ +|.||
T Consensus 228 ~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~ 305 (451)
T 2jlq_A 228 PKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQY 305 (451)
T ss_dssp GGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEE
T ss_pred HhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEE
Confidence 9999999999999999999999999 999999999999998 566677766 9999999999999999998 79998
Q ss_pred Ecee
Q 047202 317 SLYT 320 (735)
Q Consensus 317 rL~t 320 (735)
.+++
T Consensus 306 ~~~~ 309 (451)
T 2jlq_A 306 VFSG 309 (451)
T ss_dssp EECS
T ss_pred EEeC
Confidence 8764
No 8
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.92 E-value=6.3e-26 Score=263.95 Aligned_cols=149 Identities=14% Similarity=0.119 Sum_probs=117.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCC--CccEEEEeccccccCCCCCCe
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPE--KIRKVIIATNIAETSITIDDV 267 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~--g~rkVIlaTnIAEtsitIpdV 267 (735)
.+|+ +||+++.++++.+.+.|... ++.+.++||+|++++|.++.+.|.+ |.++|+||||++|+|||| +|
T Consensus 320 ~~g~-iIf~~s~~~ie~la~~L~~~-------g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v 390 (677)
T 3rc3_A 320 RPGD-CIVCFSKNDIYSVSRQIEIR-------GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SI 390 (677)
T ss_dssp CTTE-EEECSSHHHHHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CB
T ss_pred CCCC-EEEEcCHHHHHHHHHHHHhc-------CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Cc
Confidence 4566 55677799999999999864 4669999999999977777666655 899999999999999999 99
Q ss_pred EEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC----CcEEEEceehh--hHhhhcCCCCCCcccccch
Q 047202 268 VYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK----PGICYSLYTRH--RYEKLMRPYQVPEMQRMPL 341 (735)
Q Consensus 268 ~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~----~G~c~rL~t~~--~~~~~~~~~~~PEi~r~~L 341 (735)
++|||+|..|. .||+..+. ...|+|.+++.||+|||||.+ +|.||++++++ .+... .....|||.+.+|
T Consensus 391 ~~VI~~~~~k~-~~~~~G~~---~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~-~~~~~~~i~~~~l 465 (677)
T 3rc3_A 391 RRIIFYSLIKP-SINEKGER---ELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEI-LKRPVDPIRAAGL 465 (677)
T ss_dssp SEEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHH-HHSCCCCCCCEEE
T ss_pred cEEEECCcccc-ccccCCcc---ccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHH-HhcCcchhhhccC
Confidence 99999999998 88887443 257999999999999999998 59999999887 55554 4678899999888
Q ss_pred HHHHHHHHHcC
Q 047202 342 VELCLQIKLLS 352 (735)
Q Consensus 342 ~~l~L~~k~l~ 352 (735)
....++++.++
T Consensus 466 ~p~~~~l~~~~ 476 (677)
T 3rc3_A 466 HPTAEQIEMFA 476 (677)
T ss_dssp CCCHHHHHHHH
T ss_pred CChHHHHHHHh
Confidence 77777777664
No 9
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.91 E-value=5.6e-25 Score=254.96 Aligned_cols=207 Identities=16% Similarity=0.169 Sum_probs=158.6
Q ss_pred cccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhC-CCCeEeeCC
Q 047202 2 NFCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFG-DCPVITAEG 80 (735)
Q Consensus 2 ~~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~-~~pvi~i~g 80 (735)
+.+++..++.++++++|||||||+++...+..+..++..+.+ ++.++|+||||++.. ...++. +.+++.++.
T Consensus 265 l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~------~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~ 337 (618)
T 2whx_A 265 FTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEM------GEAAAIFMTATPPGS-TDPFPQSNSPIEDIER 337 (618)
T ss_dssp HHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH------TSCEEEEECSSCTTC-CCSSCCCSSCEEEEEC
T ss_pred HHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcc------cCccEEEEECCCchh-hhhhhccCCceeeecc
Confidence 345677889999999999999999988888888888776643 468999999999654 222332 222222221
Q ss_pred ceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHH
Q 047202 81 RTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQ 160 (735)
Q Consensus 81 r~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (735)
+ +|.. .+.
T Consensus 338 ~-~~~~------------------------------------------------------------------~~~----- 345 (618)
T 2whx_A 338 E-IPER------------------------------------------------------------------SWN----- 345 (618)
T ss_dssp C-CCSS------------------------------------------------------------------CCS-----
T ss_pred c-CCHH------------------------------------------------------------------HHH-----
Confidence 1 0000 000
Q ss_pred HHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHh
Q 047202 161 TRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKV 240 (735)
Q Consensus 161 ~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~v 240 (735)
.++..+.+ ..+.+|||+++.++++.+++.|... ++.+..+||. +|.++
T Consensus 346 -------------------~ll~~l~~--~~~~~LVF~~s~~~a~~l~~~L~~~-------g~~v~~lhg~----~R~~~ 393 (618)
T 2whx_A 346 -------------------TGFDWITD--YQGKTVWFVPSIKAGNDIANCLRKS-------GKRVIQLSRK----TFDTE 393 (618)
T ss_dssp -------------------SSCHHHHH--CCSCEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTT----THHHH
T ss_pred -------------------HHHHHHHh--CCCCEEEEECChhHHHHHHHHHHHc-------CCcEEEEChH----HHHHH
Confidence 00111222 3679999999999999999999865 4669999984 68889
Q ss_pred cCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceec--cCCCCcccceeEeehHhhHHHhcCcCCCCC--CcEEE
Q 047202 241 FLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRY--NSQKKLSSMVEDWISQANARQRRGRAGRVK--PGICY 316 (735)
Q Consensus 241 f~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~y--d~~~~~~~l~~~~iSkasa~QR~GRAGR~~--~G~c~ 316 (735)
++.+++|..+|+||||+||+||||| |++|||+|+.+...+ +...++......|+|.+++.||+|||||.+ +|.||
T Consensus 394 l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai 472 (618)
T 2whx_A 394 YPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQY 472 (618)
T ss_dssp TTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEE
T ss_pred HHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEE
Confidence 9999999999999999999999997 999999999887665 444556677789999999999999999995 79999
Q ss_pred Ecee
Q 047202 317 SLYT 320 (735)
Q Consensus 317 rL~t 320 (735)
.+++
T Consensus 473 ~l~~ 476 (618)
T 2whx_A 473 VFSG 476 (618)
T ss_dssp EECS
T ss_pred EEcc
Confidence 9997
No 10
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.91 E-value=1.2e-23 Score=266.71 Aligned_cols=339 Identities=12% Similarity=0.127 Sum_probs=226.5
Q ss_pred ccccccCCCCCCccEEEEcccc----cCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCCC--Ce
Q 047202 3 FCYLQGDKNLTGVTHVIVDEVH----ERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGDC--PV 75 (735)
Q Consensus 3 ~~~l~~d~~L~~~s~vIiDEvH----ER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~~--pv 75 (735)
.|+......++++++||+||+| +|+...+.++..++.+..... +++|+|+||||+ |++.|++|++.. ++
T Consensus 1035 lr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~----~~~riI~lSATl~N~~dla~WL~~~~~~~ 1110 (1724)
T 4f92_B 1035 SRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIE----RPIRIVALSSSLSNAKDVAHWLGCSATST 1110 (1724)
T ss_dssp HTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTS----SCCEEEEEESCBTTHHHHHHHHTCCSTTE
T ss_pred HhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcC----CCceEEEEeCCCCCHHHHHHHhCCCCCCe
Confidence 4566666778999999999999 677666777777776665432 679999999999 999999999742 33
Q ss_pred EeeC--CceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCC
Q 047202 76 ITAE--GRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSD 153 (735)
Q Consensus 76 i~i~--gr~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (735)
..+. .|..|++.+.... .. .
T Consensus 1111 ~~~~~~~RPvpL~~~i~~~-------~~-~-------------------------------------------------- 1132 (1724)
T 4f92_B 1111 FNFHPNVRPVPLELHIQGF-------NI-S-------------------------------------------------- 1132 (1724)
T ss_dssp EECCGGGCSSCEEEEEEEE-------CC-C--------------------------------------------------
T ss_pred EEeCCCCCCCCeEEEEEec-------cC-C--------------------------------------------------
Confidence 3333 3444444332110 00 0
Q ss_pred CCCccHHHHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCC-------------
Q 047202 154 YGSYSEQTRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGP------------- 220 (735)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~------------- 220 (735)
+.. ..+.. +...+...+.+..+.+++|||+|++.+++.++..|.........
T Consensus 1133 ---~~~---~~~~~---------~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~ 1197 (1724)
T 4f92_B 1133 ---HTQ---TRLLS---------MAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLI 1197 (1724)
T ss_dssp ---SHH---HHHHT---------THHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHH
T ss_pred ---Cch---hhhhh---------hcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHH
Confidence 000 00000 00011122233356789999999999998877666432111000
Q ss_pred --------------CCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCC
Q 047202 221 --------------SSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKK 286 (735)
Q Consensus 221 --------------~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~ 286 (735)
-...|..+||+|++++|+.+++.|..|..+|++||+.++.||++|++++||.+- ..||....
T Consensus 1198 ~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~----~~~dg~~~ 1273 (1724)
T 4f92_B 1198 PYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDT----QYYNGKIH 1273 (1724)
T ss_dssp HHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECS----EEEETTTT
T ss_pred HHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecC----ccccCccc
Confidence 012488999999999999999999999999999999999999999999999752 34665432
Q ss_pred cccceeEeehHhhHHHhcCcCCCCC---CcEEEEceehhh---HhhhcCCCCCCcccccchH----HHHHHHHHcC-CCc
Q 047202 287 LSSMVEDWISQANARQRRGRAGRVK---PGICYSLYTRHR---YEKLMRPYQVPEMQRMPLV----ELCLQIKLLS-LGR 355 (735)
Q Consensus 287 ~~~l~~~~iSkasa~QR~GRAGR~~---~G~c~rL~t~~~---~~~~~~~~~~PEi~r~~L~----~l~L~~k~l~-~~~ 355 (735)
...+.|.+++.||+|||||.+ .|.|+.+++... |..++ ..|+...+.|+ +.++.....+ +.+
T Consensus 1274 ----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll---~~~~pveS~L~~~l~~~l~~eI~~~~i~~ 1346 (1724)
T 4f92_B 1274 ----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFL---YEPLPVESHLDHCMHDHFNAEIVTKTIEN 1346 (1724)
T ss_dssp ----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHT---TSCBCCCCCGGGSCHHHHHHHHHTTSCCB
T ss_pred ----ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHh---CCCCceeeecccchHHHHHHHHHhcccCC
Confidence 346889999999999999987 599999988654 33332 33444444443 3333333332 222
Q ss_pred ---hhHhhhhc----------------------CCCChHHHHHHHHHHHHHcCCCC--CCC--CCCHhhhhhccCCCchH
Q 047202 356 ---IKIFLSKA----------------------LEPPKEEAITTAISVLYEVGAIE--GDE--ELTPLGHHLAKLPVDVL 406 (735)
Q Consensus 356 ---~~~fl~~~----------------------l~pP~~~~i~~a~~~L~~lgal~--~~~--~lT~lG~~l~~lp~~p~ 406 (735)
+.+|+... ++..-.+.++.+++.|.+.|+|+ +++ ..|++|++++.++++|.
T Consensus 1347 ~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~ 1426 (1724)
T 4f92_B 1347 KQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYT 1426 (1724)
T ss_dssp HHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHH
Confidence 22332110 01112355789999999999995 333 46999999999999999
Q ss_pred HHHHHHhhcccCCh-hHHHHHHhh
Q 047202 407 IGKMMLFGGIFGCL-SPILSISAF 429 (735)
Q Consensus 407 ~~k~l~~~~~~~c~-~~~l~iaa~ 429 (735)
.++++..+..-++. ..++.+.|.
T Consensus 1427 t~~~~~~~l~~~~~~~~~L~il~~ 1450 (1724)
T 4f92_B 1427 TIELFSMSLNAKTKVRGLIEIISN 1450 (1724)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHHT
T ss_pred HHHHHHHhccccCCHHHHHHHhcC
Confidence 99999988776664 445555543
No 11
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.91 E-value=1.9e-24 Score=241.68 Aligned_cols=205 Identities=20% Similarity=0.190 Sum_probs=147.6
Q ss_pred cccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhC-CCCeEeeCCce
Q 047202 4 CYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFG-DCPVITAEGRT 82 (735)
Q Consensus 4 ~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~-~~pvi~i~gr~ 82 (735)
++++.+..++++++|||||+|+.+...++.++++.+++.. ++.++++||||+..... .+.. ..|+..
T Consensus 89 ~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~------~~~~~l~~SAT~~~~~~-~~~~~~~~~~~----- 156 (440)
T 1yks_A 89 YRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARA------NESATILMTATPPGTSD-EFPHSNGEIED----- 156 (440)
T ss_dssp HHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHT------TSCEEEEECSSCTTCCC-SSCCCSSCEEE-----
T ss_pred HhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhcc------CCceEEEEeCCCCchhh-hhhhcCCCeeE-----
Confidence 4566777899999999999999988888888888887642 46899999999954411 1111 111111
Q ss_pred ecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHHH
Q 047202 83 HPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQTR 162 (735)
Q Consensus 83 ~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (735)
+...+ .+ . ..
T Consensus 157 --~~~~~-~~--------------------------------------------------~---------~~-------- 166 (440)
T 1yks_A 157 --VQTDI-PS--------------------------------------------------E---------PW-------- 166 (440)
T ss_dssp --EECCC-CS--------------------------------------------------S---------CC--------
T ss_pred --eeecc-Ch--------------------------------------------------H---------HH--------
Confidence 10000 00 0 00
Q ss_pred HHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcC
Q 047202 163 QNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFL 242 (735)
Q Consensus 163 ~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~ 242 (735)
. .++..+.+ .++.+|||+|+.++++.+++.|... ++.+..+|| ++|.++++
T Consensus 167 -------~---------~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L~~~-------~~~v~~lhg----~~R~~~~~ 217 (440)
T 1yks_A 167 -------N---------TGHDWILA--DKRPTAWFLPSIRAANVMAASLRKA-------GKSVVVLNR----KTFEREYP 217 (440)
T ss_dssp -------S---------SSCHHHHH--CCSCEEEECSCHHHHHHHHHHHHHT-------TCCEEECCS----SSCC----
T ss_pred -------H---------HHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHc-------CCCEEEecc----hhHHHHHh
Confidence 0 00111222 3679999999999999999999764 466999999 46888999
Q ss_pred CCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceec-cCCCCcccceeEeehHhhHHHhcCcCCCC--CCcEEEEce
Q 047202 243 RPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRY-NSQKKLSSMVEDWISQANARQRRGRAGRV--KPGICYSLY 319 (735)
Q Consensus 243 ~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~y-d~~~~~~~l~~~~iSkasa~QR~GRAGR~--~~G~c~rL~ 319 (735)
.|..|..+|+|||+++|+||+|| |++|||+|..+...| +...++......|.|.+++.||+|||||. ++|.||.+|
T Consensus 218 ~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 218 TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp ----CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred hhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 99999999999999999999999 999999999998876 45556667778899999999999999997 379999998
Q ss_pred e
Q 047202 320 T 320 (735)
Q Consensus 320 t 320 (735)
+
T Consensus 297 ~ 297 (440)
T 1yks_A 297 E 297 (440)
T ss_dssp S
T ss_pred c
Confidence 4
No 12
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=2e-24 Score=217.67 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=145.3
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE 259 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE 259 (735)
.++..+....+++.+|||+++..+++.+.+.|... ++.+.++||++++++|.++++.|+.|..+|+||||+|+
T Consensus 20 ~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~ 92 (212)
T 3eaq_A 20 EVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL-------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92 (212)
T ss_dssp HHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH-------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTT
T ss_pred HHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhh
Confidence 34444444556889999999999999999999765 46799999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhH--------------
Q 047202 260 TSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRY-------------- 324 (735)
Q Consensus 260 tsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~-------------- 324 (735)
+|||||+|.+||+.|. |.|.+++.||+|||||.+ +|.||.+|+..+.
T Consensus 93 ~Gidi~~v~~Vi~~~~------------------p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 93 RGLDIPQVDLVVHYRL------------------PDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp CSSSCCCBSEEEESSC------------------CSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCC
T ss_pred cCCCCccCcEEEECCC------------------CcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcC
Confidence 9999999999999553 347899999999999996 7999999998762
Q ss_pred hhhcCCCCCCcccccchHHHHHHHHHcCCCch---hHhhhhcCCCChHHHHHHHHHHH
Q 047202 325 EKLMRPYQVPEMQRMPLVELCLQIKLLSLGRI---KIFLSKALEPPKEEAITTAISVL 379 (735)
Q Consensus 325 ~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~---~~fl~~~l~pP~~~~i~~a~~~L 379 (735)
.. +.....|||.+..++.++++++.+...+. .+++.+++++|+++.+..|+..|
T Consensus 155 ~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 155 KR-VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp EE-CCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ee-cCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 22 34456689999999999999998765433 34455788999999999998766
No 13
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.90 E-value=1.2e-23 Score=266.72 Aligned_cols=348 Identities=17% Similarity=0.162 Sum_probs=228.4
Q ss_pred cccccCCCCCCccEEEEcccc----cCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhCCCC---e
Q 047202 4 CYLQGDKNLTGVTHVIVDEVH----ERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFGDCP---V 75 (735)
Q Consensus 4 ~~l~~d~~L~~~s~vIiDEvH----ER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~~~p---v 75 (735)
|+......++++++||||||| +|+...+.++..+++...... +++|+|+||||+ |++.+++|++..+ +
T Consensus 197 r~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~----~~~riI~LSATl~N~~dvA~wL~~~~~~~~ 272 (1724)
T 4f92_B 197 RKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQ----EDVRLIGLSATLPNYEDVATFLRVDPAKGL 272 (1724)
T ss_dssp TSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHT----CCCEEEEEECSCTTHHHHHHHTTCCHHHHE
T ss_pred cCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCC----CCCcEEEEecccCCHHHHHHHhCCCCCCCe
Confidence 333333458899999999999 788877888777666554432 679999999999 8999999997532 2
Q ss_pred EeeC--CceecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCC
Q 047202 76 ITAE--GRTHPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSD 153 (735)
Q Consensus 76 i~i~--gr~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (735)
..+. .|..|++.+|.... . +
T Consensus 273 ~~~~~~~RPvpL~~~~~~~~---------~----------------------~--------------------------- 294 (1724)
T 4f92_B 273 FYFDNSFRPVPLEQTYVGIT---------E----------------------K--------------------------- 294 (1724)
T ss_dssp EECCGGGCSSCEEEECCEEC---------C----------------------C---------------------------
T ss_pred EEECCCCccCccEEEEeccC---------C----------------------c---------------------------
Confidence 2232 23344444443210 0 0
Q ss_pred CCCccHHHHHHhhhccccccchHHHHHHH-HHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCC------------
Q 047202 154 YGSYSEQTRQNLKRLNEDVIDYDLLEDLV-CHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGP------------ 220 (735)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~i~~~li~~ll-~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~------------ 220 (735)
. . .+ ..+.+...+ ..+.+....+++|||++++.+++.+++.|.......+.
T Consensus 295 --~-~------~~-------~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~ 358 (1724)
T 4f92_B 295 --K-A------IK-------RFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSAST 358 (1724)
T ss_dssp --C-H------HH-------HHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCS
T ss_pred --c-h------hh-------hhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHH
Confidence 0 0 00 000111111 22333445679999999999998888777532100000
Q ss_pred ------------------CCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceecc
Q 047202 221 ------------------SSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYN 282 (735)
Q Consensus 221 ------------------~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd 282 (735)
-...|..+||+|++++|..+.+.|..|..||++||+.++.||++|.+++||.. ...||
T Consensus 359 ~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~ 434 (1724)
T 4f92_B 359 EVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYS 434 (1724)
T ss_dssp SHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEE
T ss_pred HHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEec
Confidence 01238899999999999999999999999999999999999999999999963 35688
Q ss_pred CCCCcccceeEeehHhhHHHhcCcCCCCC---CcEEEEceehhh---HhhhcCCCCCC-cc-cccchHHHHHHHHHcC-C
Q 047202 283 SQKKLSSMVEDWISQANARQRRGRAGRVK---PGICYSLYTRHR---YEKLMRPYQVP-EM-QRMPLVELCLQIKLLS-L 353 (735)
Q Consensus 283 ~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~c~rL~t~~~---~~~~~~~~~~P-Ei-~r~~L~~l~L~~k~l~-~ 353 (735)
+..+. ..++|.+++.||+|||||.+ .|.++-+.++.+ |..++.. +.| |- +...|.+.+++-..+| +
T Consensus 435 ~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~-~~pieS~l~~~l~d~L~aeI~~g~i 509 (1724)
T 4f92_B 435 PEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQ-QLPIESQMVSKLPDMLNAEIVLGNV 509 (1724)
T ss_dssp TTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTT-CSCCCCCTTTTHHHHHHHHHHHTSC
T ss_pred CcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcC-CCcchhhccccHHHHHHHHHHHhhc
Confidence 87653 46899999999999999986 599999988754 4443322 222 11 1112333333322332 3
Q ss_pred Cch---hHhhhhc-------------------------CCCChHHHHHHHHHHHHHcCCCCCC---C--CCCHhhhhhcc
Q 047202 354 GRI---KIFLSKA-------------------------LEPPKEEAITTAISVLYEVGAIEGD---E--ELTPLGHHLAK 400 (735)
Q Consensus 354 ~~~---~~fl~~~-------------------------l~pP~~~~i~~a~~~L~~lgal~~~---~--~lT~lG~~l~~ 400 (735)
.+. .+|+... ++....+.+..|+..|.+.|.|..+ + ..|++|+.+++
T Consensus 510 ~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~ 589 (1724)
T 4f92_B 510 QNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASH 589 (1724)
T ss_dssp CBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHH
T ss_pred CCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHH
Confidence 332 2222110 1111234578999999999999532 2 68999999999
Q ss_pred CCCchHHHHHHHhhcccCCh-hHHHHHHhhhc-cCCCccc
Q 047202 401 LPVDVLIGKMMLFGGIFGCL-SPILSISAFLS-YKSPFIY 438 (735)
Q Consensus 401 lp~~p~~~k~l~~~~~~~c~-~~~l~iaa~ls-~~~~f~~ 438 (735)
++++|...+.+.....-.+. .+++.+.|..+ .+++.++
T Consensus 590 ~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R 629 (1724)
T 4f92_B 590 YYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVR 629 (1724)
T ss_dssp TTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCC
T ss_pred hcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcC
Confidence 99999999999887766654 35666655443 3444443
No 14
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.90 E-value=5.4e-24 Score=248.37 Aligned_cols=206 Identities=18% Similarity=0.192 Sum_probs=157.3
Q ss_pred ccccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhC-CCCeEeeCCc
Q 047202 3 FCYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFG-DCPVITAEGR 81 (735)
Q Consensus 3 ~~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~-~~pvi~i~gr 81 (735)
.+++..++.++++++|||||+|+.+...+..++.++.++.. ++.++|+||||+..+.. .+.. ..|+..+...
T Consensus 321 ~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~~------~~~~vl~~SAT~~~~i~-~~~~~~~~i~~v~~~ 393 (673)
T 2wv9_A 321 THRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEA------GEAAAIFMTATPPGTSD-PFPDTNSPVHDVSSE 393 (673)
T ss_dssp HHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHHT------TSCEEEEECSSCTTCCC-SSCCCSSCEEEEECC
T ss_pred HHHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhccc------cCCcEEEEcCCCChhhh-hhcccCCceEEEeee
Confidence 35667788899999999999999998889999999887742 35899999999964311 1111 1222221110
Q ss_pred eecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHH
Q 047202 82 THPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQT 161 (735)
Q Consensus 82 ~~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (735)
+|. + ..
T Consensus 394 -~~~------~------------------------------------------------------------~~------- 399 (673)
T 2wv9_A 394 -IPD------R------------------------------------------------------------AW------- 399 (673)
T ss_dssp -CCS------S------------------------------------------------------------CC-------
T ss_pred -cCH------H------------------------------------------------------------HH-------
Confidence 000 0 00
Q ss_pred HHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhc
Q 047202 162 RQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVF 241 (735)
Q Consensus 162 ~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf 241 (735)
. .++..+.+ ..+.+|||+|+.++++.+++.|... ++.+..+||. +|.+++
T Consensus 400 --------~---------~~l~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~-------g~~v~~lHg~----eR~~v~ 449 (673)
T 2wv9_A 400 --------S---------SGFEWITD--YAGKTVWFVASVKMSNEIAQCLQRA-------GKRVIQLNRK----SYDTEY 449 (673)
T ss_dssp --------S---------SCCHHHHS--CCSCEEEECSSHHHHHHHHHHHHTT-------TCCEEEECSS----SHHHHG
T ss_pred --------H---------HHHHHHHh--CCCCEEEEECCHHHHHHHHHHHHhC-------CCeEEEeChH----HHHHHH
Confidence 0 00112222 4789999999999999999999764 4679999993 788999
Q ss_pred CCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccce--eccCCCCcccceeEeehHhhHHHhcCcCCCC--CCcEEEE
Q 047202 242 LRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKEN--RYNSQKKLSSMVEDWISQANARQRRGRAGRV--KPGICYS 317 (735)
Q Consensus 242 ~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~--~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~--~~G~c~r 317 (735)
+.|+.|..+|+|||+++|+||||| |.+|||+|+.... .||+..++..+...|.|.+++.||+|||||. ++|.||.
T Consensus 450 ~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~ 528 (673)
T 2wv9_A 450 PKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYH 528 (673)
T ss_dssp GGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEE
T ss_pred HHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEE
Confidence 999999999999999999999999 9999999987654 4677767777777999999999999999998 4699999
Q ss_pred cee
Q 047202 318 LYT 320 (735)
Q Consensus 318 L~t 320 (735)
++.
T Consensus 529 l~~ 531 (673)
T 2wv9_A 529 YGG 531 (673)
T ss_dssp ECS
T ss_pred EEe
Confidence 975
No 15
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.90 E-value=1.1e-23 Score=242.43 Aligned_cols=119 Identities=23% Similarity=0.231 Sum_probs=102.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
..+.+|||++++++++.+.+.|... ++.+.++||+|++++ +..+.++|+||||+||+||||| |++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~ 459 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDS 459 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcE
Confidence 5789999999999999999999864 467999999998775 2346679999999999999997 999
Q ss_pred EEeCCccccee----ccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHh
Q 047202 270 VFDCGRHKENR----YNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYE 325 (735)
Q Consensus 270 VIDsG~~k~~~----yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~ 325 (735)
|||+|+.+... |||..++.. ...|+|.+++.||+|||||.++|. |.||++.++.
T Consensus 460 VI~~Gl~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 460 VIDCNTCVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEECCEEEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCCBC
T ss_pred EEecCccccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEecchhh
Confidence 99999988764 567777655 468999999999999999988899 9999976543
No 16
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=2.7e-24 Score=227.41 Aligned_cols=179 Identities=16% Similarity=0.231 Sum_probs=145.9
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE 259 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE 259 (735)
+++..+.....++.+|||+++.++++.+.+.|... ++.+.++||+|++.+|.++++.++.|.++|+||||+|+
T Consensus 17 ~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~-------g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~ 89 (300)
T 3i32_A 17 EVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL-------GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAA 89 (300)
T ss_dssp HHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT-------TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTT
T ss_pred HHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC-------CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhh
Confidence 34444444445899999999999999999999754 46799999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhh--------------H
Q 047202 260 TSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHR--------------Y 324 (735)
Q Consensus 260 tsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~--------------~ 324 (735)
+|||||+|.+||++|.+ .|.+++.||+|||||.+ +|.||.+|+..+ +
T Consensus 90 ~Gidi~~v~~VI~~d~p------------------~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 90 RGLDIPQVDLVVHYRMP------------------DRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp CSTTCCCCSEEEESSCC------------------SSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred cCccccceeEEEEcCCC------------------CCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 99999999999996543 36788999999999996 799999999876 2
Q ss_pred hhhcCCCCCCcccccchHHHHHHHHHcCCCchhHh---hhhcCCCChHHHHHHHHHHHHHcCC
Q 047202 325 EKLMRPYQVPEMQRMPLVELCLQIKLLSLGRIKIF---LSKALEPPKEEAITTAISVLYEVGA 384 (735)
Q Consensus 325 ~~~~~~~~~PEi~r~~L~~l~L~~k~l~~~~~~~f---l~~~l~pP~~~~i~~a~~~L~~lga 384 (735)
.. +...+.|||.+..++.++++++.++.+++..| +.+++++|+.+.+.+|+..|.....
T Consensus 152 ~~-~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 152 KR-VNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp EE-CCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred eE-eCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 22 34556789999999999999998765554433 4467788999999999999976654
No 17
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.89 E-value=8.9e-24 Score=235.63 Aligned_cols=204 Identities=19% Similarity=0.149 Sum_probs=154.2
Q ss_pred cccccCCCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhC-CCCeEeeCCce
Q 047202 4 CYLQGDKNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFG-DCPVITAEGRT 82 (735)
Q Consensus 4 ~~l~~d~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~-~~pvi~i~gr~ 82 (735)
+++..++.+.++++|||||+|+++..++..+..++.+... ++.++|+||||+.... ..+.. ..|++.+++.
T Consensus 83 ~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~------~~~~~l~~SAT~~~~~-~~~~~~~~~i~~~~~~- 154 (431)
T 2v6i_A 83 MKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSM------GDAGAIFMTATPPGTT-EAFPPSNSPIIDEETR- 154 (431)
T ss_dssp HHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHT------TSCEEEEEESSCTTCC-CSSCCCSSCCEEEECC-
T ss_pred HHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhC------CCCcEEEEeCCCCcch-hhhcCCCCceeecccc-
Confidence 4566688899999999999999988888888888887632 4689999999996431 11111 1122211110
Q ss_pred ecceEEechhhHhhhhhhcccchHHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCCCCccHHHH
Q 047202 83 HPVTTYFLEDVYESINYRLALDSAAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDYGSYSEQTR 162 (735)
Q Consensus 83 ~pV~~~~led~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (735)
+|. ..+
T Consensus 155 ~~~------------------------------------------------------------------~~~-------- 160 (431)
T 2v6i_A 155 IPD------------------------------------------------------------------KAW-------- 160 (431)
T ss_dssp CCS------------------------------------------------------------------SCC--------
T ss_pred CCH------------------------------------------------------------------HHH--------
Confidence 000 000
Q ss_pred HHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcC
Q 047202 163 QNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFL 242 (735)
Q Consensus 163 ~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~ 242 (735)
. .++..+.+ ..|.+|||+|+.++++.+++.|... ++.+..+||. ++.++++
T Consensus 161 -------~---------~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~v~~lhg~----~r~~~~~ 211 (431)
T 2v6i_A 161 -------N---------SGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKA-------GKKVLYLNRK----TFESEYP 211 (431)
T ss_dssp -------S---------SCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHT-------TCCEEEESTT----THHHHTT
T ss_pred -------H---------HHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHc-------CCeEEEeCCc----cHHHHHH
Confidence 0 00111222 3679999999999999999999765 4669999997 5778999
Q ss_pred CCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEcee
Q 047202 243 RPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYT 320 (735)
Q Consensus 243 ~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t 320 (735)
.+..|..+|+|||+++|+||+|| +.+|||+|..+...|| ..++......|.|.+++.||+|||||.++ +.|+.+|.
T Consensus 212 ~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 212 KCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp HHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred hhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999999999999 9999999999999998 66777788899999999999999999874 55666665
No 18
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.7e-23 Score=254.86 Aligned_cols=134 Identities=19% Similarity=0.194 Sum_probs=104.0
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCC--------------------C------------CcEE
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGP--------------------S------------SDWL 225 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~--------------------~------------~~~i 225 (735)
+..++..+.. ...+.+|||++++.+++.+...|......... . ...|
T Consensus 429 l~~li~~l~~-~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV 507 (1108)
T 3l9o_A 429 IYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 507 (1108)
T ss_dssp HHHHHHHHHH-TTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTE
T ss_pred HHHHHHHHHh-cCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCe
Confidence 3445544443 35679999999999999999887542100000 0 0118
Q ss_pred EEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcC
Q 047202 226 LALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRG 305 (735)
Q Consensus 226 ~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~G 305 (735)
.++||+|++.+|..+++.|+.|..+||+||+++++|||||+|++||+... .||.. ...|+|.++|.||+|
T Consensus 508 ~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~------~~r~iS~~eyiQr~G 577 (1108)
T 3l9o_A 508 GIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQ------QFRWVSGGEYIQMSG 577 (1108)
T ss_dssp EEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE----EESSS------CEEECCHHHHHHHHH
T ss_pred eeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc----ccCcc------ccccCCHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999998542 24433 246999999999999
Q ss_pred cCCCCC---CcEEEEceehh
Q 047202 306 RAGRVK---PGICYSLYTRH 322 (735)
Q Consensus 306 RAGR~~---~G~c~rL~t~~ 322 (735)
||||.+ +|+||.+++..
T Consensus 578 RAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 578 RAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp HSCCSSSCSSEEEEEEECCC
T ss_pred ccCCCCCCCceEEEEEecCC
Confidence 999998 79999999875
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.88 E-value=3.2e-23 Score=229.05 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=92.0
Q ss_pred HHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccccc
Q 047202 181 LVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAET 260 (735)
Q Consensus 181 ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEt 260 (735)
.+..+......+.+|||+++.++++.+.+.|... ++.+..+||++++++|.++++.++.|..+|+|||+++++
T Consensus 270 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 342 (414)
T 3eiq_A 270 TLCDLYETLTITQAVIFINTRRKVDWLTEKMHAR-------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLAR 342 (414)
T ss_dssp HHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTT-------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC-
T ss_pred HHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhc-------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcccc
Confidence 3444555557789999999999999999999764 466899999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 261 SITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 261 sitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
||+||+|++||+.+ + +.|.+++.||+|||||.+ +|.||.+|++.+...
T Consensus 343 Gidip~v~~Vi~~~--------~----------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 391 (414)
T 3eiq_A 343 GIDVQQVSLVINYD--------L----------PTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRT 391 (414)
T ss_dssp -CCGGGCSCEEESS--------C----------CSSTHHHHHHSCCC-------CEEEEECSTHHHH
T ss_pred CCCccCCCEEEEeC--------C----------CCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHH
Confidence 99999999999844 2 346788999999999985 599999999876543
No 20
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.88 E-value=7.4e-23 Score=248.82 Aligned_cols=132 Identities=15% Similarity=0.112 Sum_probs=103.2
Q ss_pred HHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCC---------------------------------CCc
Q 047202 177 LLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGP---------------------------------SSD 223 (735)
Q Consensus 177 li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~---------------------------------~~~ 223 (735)
.+..++..+.. ...+++|||++++.+++.+.+.|.... +... ...
T Consensus 323 ~~~~li~~l~~-~~~~~~IVF~~sr~~~e~la~~L~~~~-~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 400 (997)
T 4a4z_A 323 TWPEIVNYLRK-RELLPMVVFVFSKKRCEEYADWLEGIN-FCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLER 400 (997)
T ss_dssp HHHHHHHHHHH-TTCCSEEEECSCHHHHHHHHHTTTTCC-CCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh-CCCCCEEEEECCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhc
Confidence 34455555544 466899999999999999988875421 0000 011
Q ss_pred EEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHh
Q 047202 224 WLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQR 303 (735)
Q Consensus 224 ~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR 303 (735)
.|.++||+|++.+|..+++.|..|..+|++||+++++|||||++ +||..+..| ||.. ...|+|.+++.||
T Consensus 401 gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~-~VVi~~~~k---~dg~------~~~~~s~~~y~Qr 470 (997)
T 4a4z_A 401 GIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTR-TVIFSSIRK---HDGN------GLRELTPGEFTQM 470 (997)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCS-EEEESCSEE---EETT------EEEECCHHHHHHH
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCc-eEEEecccc---ccCc------cCCCCCHHHHhHH
Confidence 48999999999999999999999999999999999999999995 455455554 5543 2469999999999
Q ss_pred cCcCCCCC---CcEEEEcee
Q 047202 304 RGRAGRVK---PGICYSLYT 320 (735)
Q Consensus 304 ~GRAGR~~---~G~c~rL~t 320 (735)
+|||||.+ +|+||.+++
T Consensus 471 ~GRAGR~G~~~~G~vi~l~~ 490 (997)
T 4a4z_A 471 AGRAGRRGLDSTGTVIVMAY 490 (997)
T ss_dssp HGGGCCTTTCSSEEEEEECC
T ss_pred hcccccCCCCcceEEEEecC
Confidence 99999986 799999994
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.88 E-value=2.8e-22 Score=219.48 Aligned_cols=125 Identities=20% Similarity=0.303 Sum_probs=106.1
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE 259 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE 259 (735)
..+..+......+.+|||+++.++++.+.+.|... +..+..+||+++.++|.++++.+..|..+|+|||++++
T Consensus 232 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 304 (395)
T 3pey_A 232 DVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSE-------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLA 304 (395)
T ss_dssp HHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGS
T ss_pred HHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhh
Confidence 34444555556789999999999999999999765 45689999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhh
Q 047202 260 TSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHR 323 (735)
Q Consensus 260 tsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~ 323 (735)
+||+||++.+||+.+.++ +...+.|.+++.||+|||||.+. |.|+.+++...
T Consensus 305 ~Gidip~~~~Vi~~~~p~------------~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 305 RGIDIPTVSMVVNYDLPT------------LANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp SSCCCTTEEEEEESSCCB------------CTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred cCCCcccCCEEEEcCCCC------------CCcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 999999999999955332 22346789999999999999865 99999998643
No 22
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.86 E-value=8.1e-22 Score=217.47 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=103.2
Q ss_pred HHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCC
Q 047202 185 VDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITI 264 (735)
Q Consensus 185 i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitI 264 (735)
+......+.+|||+++.++++.+.+.|... +..+..+||+++.++|.++++.+..|..+|+|||+++++||+|
T Consensus 260 ~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 332 (412)
T 3fht_A 260 LYGAITIAQAMIFCHTRKTASWLAAELSKE-------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV 332 (412)
T ss_dssp HHHHHSSSEEEEECSSHHHHHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCC
T ss_pred HHhhcCCCCEEEEeCCHHHHHHHHHHHHhC-------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCc
Confidence 333346789999999999999999999765 4568999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhh
Q 047202 265 DDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHR 323 (735)
Q Consensus 265 pdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~ 323 (735)
|++++||+.+.+....+ +.|.+++.||+|||||.+. |.||.+++...
T Consensus 333 p~~~~Vi~~~~p~~~~~------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 333 EQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp TTEEEEEESSCCBCSSS------------SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred cCCCEEEEECCCCCCCC------------CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 99999999665543322 3578999999999999765 99999998654
No 23
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.86 E-value=3.4e-21 Score=222.44 Aligned_cols=123 Identities=21% Similarity=0.193 Sum_probs=106.1
Q ss_pred HHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccc
Q 047202 179 EDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIA 258 (735)
Q Consensus 179 ~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIA 258 (735)
..++..+......+.+|||+++.++++.+++.|... ++.+.++||+|++++|.++++.|..|..+|||||+++
T Consensus 255 ~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~ 327 (591)
T 2v1x_A 255 EDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNL-------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAF 327 (591)
T ss_dssp HHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTS
T ss_pred HHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHC-------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh
Confidence 344444444446789999999999999999999764 4679999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 259 ETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 259 EtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
++||++|+|++||+.+.++ |..++.||+|||||.+ +|.|+.+|+..+...
T Consensus 328 ~~GID~p~V~~VI~~~~p~------------------s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~ 378 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSK------------------SMENYYQESGRAGRDDMKADCILYYGFGDIFR 378 (591)
T ss_dssp CTTCCCSCEEEEEESSCCS------------------SHHHHHHHHTTSCTTSSCEEEEEEECHHHHHH
T ss_pred hcCCCcccccEEEEeCCCC------------------CHHHHHHHhccCCcCCCCceEEEEEChHHHHH
Confidence 9999999999999955432 7889999999999986 699999999887654
No 24
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.85 E-value=3.5e-21 Score=208.62 Aligned_cols=113 Identities=24% Similarity=0.254 Sum_probs=101.3
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
...+.+|||+++.++++.+.+.|... ++.+..+||+++.++|+++++.+..|..+|+|||+++++|+++|++.
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDI-------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHT-------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhc-------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 35778999999999999999999764 46689999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
+||+.+. |.|.+++.||+|||||.+ +|.||.++++.++..
T Consensus 309 ~Vi~~~~------------------~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~ 349 (367)
T 1hv8_A 309 CVINYHL------------------PQNPESYMHRIGRTGRAGKKGKAISIINRREYKK 349 (367)
T ss_dssp EEEESSC------------------CSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred EEEEecC------------------CCCHHHhhhcccccccCCCccEEEEEEcHHHHHH
Confidence 9998542 457889999999999986 799999999887654
No 25
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.85 E-value=2.7e-21 Score=213.88 Aligned_cols=113 Identities=19% Similarity=0.230 Sum_probs=99.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
...+.+|||+++.++++.+.+.|... ++.+..+||+++.++|.++++.+..|..+|+|||+++++||+||+|+
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~ 346 (417)
T 2i4i_A 274 GKDSLTLVFVETKKGADSLEDFLYHE-------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVK 346 (417)
T ss_dssp CTTCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEE
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHC-------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCC
Confidence 35778999999999999999999764 46799999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
+||+.+ + |.|.+++.||+|||||.+ +|.||.+|++.+...
T Consensus 347 ~Vi~~~--------~----------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 347 HVINFD--------L----------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNINI 387 (417)
T ss_dssp EEEESS--------C----------CSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGG
T ss_pred EEEEEc--------C----------CCCHHHHHHhcCccccCCCCceEEEEEccccHHH
Confidence 999844 3 347889999999999986 599999999876543
No 26
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.7e-21 Score=233.97 Aligned_cols=264 Identities=20% Similarity=0.262 Sum_probs=160.1
Q ss_pred CCCCCCccEEEEcccc-----cCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhC-----CCCeEe
Q 047202 9 DKNLTGVTHVIVDEVH-----ERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFG-----DCPVIT 77 (735)
Q Consensus 9 d~~L~~~s~vIiDEvH-----ER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~-----~~pvi~ 77 (735)
...+.++++||||||| +|+...+.++..+ .++.++|+||||+ +...|++|++ .+.++.
T Consensus 187 ~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l-----------~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~ 255 (1010)
T 2xgj_A 187 SEVMREVAWVIFDEVHYMRDKERGVVWEETIILL-----------PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY 255 (1010)
T ss_dssp CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS-----------CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEE
T ss_pred cchhhcCCEEEEechhhhcccchhHHHHHHHHhc-----------CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEe
Confidence 3568999999999999 4555444443322 1468999999999 7778888875 355677
Q ss_pred eCCceecceEEechhhHhhhhhhcccch---HHHHHhhhccCCCCcccccCccccccCCCCCCCcccccccCCCCCCCCC
Q 047202 78 AEGRTHPVTTYFLEDVYESINYRLALDS---AAAIRYEASSKSGPVNNRRGKKNLVLSGWGDDSLLSEEYINPYYDPSDY 154 (735)
Q Consensus 78 i~gr~~pV~~~~led~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (735)
.+++..|++.++................ ......... .+. ...++. .++. ..
T Consensus 256 ~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~----------~~~~~~-------~~~~----~~ 310 (1010)
T 2xgj_A 256 TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMA----SIS----------NQIGDD-------PNST----DS 310 (1010)
T ss_dssp ECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHH----TCC---------------------------------
T ss_pred cCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHH----HHh----------hhhccc-------cccc----cc
Confidence 7888888887765321000000000000 000000000 000 000000 0000 00
Q ss_pred CCccHHHHHHhhhccccccchHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhc------------------
Q 047202 155 GSYSEQTRQNLKRLNEDVIDYDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYR------------------ 216 (735)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~i~~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~------------------ 216 (735)
....... -+.......+...+..++..+.. ...+.+|||++++.+++.+.+.|.....
T Consensus 311 ~g~~~~~---~k~~~~~~~~~~~l~~l~~~l~~-~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~ 386 (1010)
T 2xgj_A 311 RGKKGQT---YKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIA 386 (1010)
T ss_dssp ---------------------CHHHHHHHHHHH-HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHT
T ss_pred ccccccc---cccccccccchHHHHHHHHHHHh-cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 0000000 00000000002233445544443 2456899999999999999888754200
Q ss_pred -cCCCC-------------CcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceecc
Q 047202 217 -FGGPS-------------SDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYN 282 (735)
Q Consensus 217 -~~~~~-------------~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd 282 (735)
+.... ...|..+||+|++.+|..+++.|..|..||++||+++++||++|++++||++ ...||
T Consensus 387 ~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd 462 (1010)
T 2xgj_A 387 LLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWD 462 (1010)
T ss_dssp TSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEEC
T ss_pred hcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccC
Confidence 00000 0128899999999999999999999999999999999999999999999984 23466
Q ss_pred CCCCcccceeEeehHhhHHHhcCcCCCCC---CcEEEEceehh
Q 047202 283 SQKKLSSMVEDWISQANARQRRGRAGRVK---PGICYSLYTRH 322 (735)
Q Consensus 283 ~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~c~rL~t~~ 322 (735)
... ..|+|.+++.||+|||||.+ .|.||.++++.
T Consensus 463 ~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 463 GQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp SSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred CcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 432 46899999999999999997 49999999854
No 27
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.85 E-value=8.3e-21 Score=208.94 Aligned_cols=115 Identities=15% Similarity=0.210 Sum_probs=101.8
Q ss_pred ccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCC
Q 047202 187 ETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDD 266 (735)
Q Consensus 187 ~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpd 266 (735)
.....+.+|||+++.++++.+.+.|... ++.+..+||+++.++|+.+++.+..|..+|+|||+++++|++||+
T Consensus 254 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 254 SKLQINQAIIFCNSTNRVELLAKKITDL-------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHSCCSEEEEECSSHHHHHHHHHHHHHH-------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred hhcCCCcEEEEEecHHHHHHHHHHHHhc-------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 3346789999999999999999999765 456899999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 267 VVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 267 V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
+.+||+.+ + |.|.+++.||+|||||.+ +|.||.+|++.+...
T Consensus 327 ~~~Vi~~~--------~----------p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~ 369 (400)
T 1s2m_A 327 VNVVINFD--------F----------PKTAETYLHRIGRSGRFGHLGLAINLINWNDRFN 369 (400)
T ss_dssp EEEEEESS--------C----------CSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHH
T ss_pred CCEEEEeC--------C----------CCCHHHHHHhcchhcCCCCCceEEEEeccchHHH
Confidence 99999843 2 357889999999999985 699999999887644
No 28
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.85 E-value=8.9e-22 Score=232.80 Aligned_cols=150 Identities=19% Similarity=0.180 Sum_probs=84.7
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEe--------cCCCCHHHHHHhcCCCCC-Cc
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLAL--------HSSVASVDQKKVFLRPPE-KI 248 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~L--------Hs~l~~~eq~~vf~~~~~-g~ 248 (735)
+..++.......+.+.+|||++++++++.+.+.|.....+. .+.+..+ ||+|++++|+++++.|+. |.
T Consensus 385 L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~---~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~ 461 (696)
T 2ykg_A 385 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS---FLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGD 461 (696)
T ss_dssp HHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCC---SCCEEC-----------------------------C
T ss_pred HHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCcc---ccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCC
Confidence 33444433333467899999999999999999998653211 2445556 779999999999999998 99
Q ss_pred cEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhH----
Q 047202 249 RKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRY---- 324 (735)
Q Consensus 249 rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~---- 324 (735)
.+|+|||++||+|||||+|++||+ ||+.. |..++.||+|| ||.++|.||.|+++.+.
T Consensus 462 ~~vLVaT~v~~~GiDip~v~~VI~--------~d~p~----------s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~ 522 (696)
T 2ykg_A 462 HNILIATSVADEGIDIAQCNLVIL--------YEYVG----------NVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKE 522 (696)
T ss_dssp CSCSEEEESSCCC---CCCSEEEE--------ESCC------------CCCC----------CCCEEEEEESCHHHHHHH
T ss_pred ccEEEEechhhcCCcCccCCEEEE--------eCCCC----------CHHHHHHhhcc-CcCCCceEEEEecCCCHHHHH
Confidence 999999999999999999999998 66543 34456799999 99999999999998776
Q ss_pred ------hhhcCCCCCCcccccchHHHHHHHHH
Q 047202 325 ------EKLMRPYQVPEMQRMPLVELCLQIKL 350 (735)
Q Consensus 325 ------~~~~~~~~~PEi~r~~L~~l~L~~k~ 350 (735)
+.++ ....||+.+.+++.++.+++.
T Consensus 523 ~~~~~~e~~~-~~~~~~~~~~~~~~~~~~i~~ 553 (696)
T 2ykg_A 523 QINMYKEKMM-NDSILRLQTWDEAVFREKILH 553 (696)
T ss_dssp HHHHHHHHHH-HHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHhhccCHHHHHHHHHH
Confidence 3322 345667777777766666654
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.84 E-value=1.6e-20 Score=214.35 Aligned_cols=111 Identities=17% Similarity=0.142 Sum_probs=100.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
..+.+|||+++.++++.+++.|... ++.+.++||+|++++|.++++.+..|..+|||||+++++||++|+|++
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~ 307 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK-------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRF 307 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC-------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccE
Confidence 5679999999999999999999765 466999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYE 325 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~ 325 (735)
||+.+. |-|.+++.||+|||||.+ +|.|+.+|+..+..
T Consensus 308 VI~~~~------------------p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~ 346 (523)
T 1oyw_A 308 VVHFDI------------------PRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (523)
T ss_dssp EEESSC------------------CSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHH
T ss_pred EEEECC------------------CCCHHHHHHHhccccCCCCCceEEEEeCHHHHH
Confidence 998543 347889999999999987 69999999987654
No 30
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.84 E-value=7.3e-21 Score=210.20 Aligned_cols=112 Identities=12% Similarity=0.223 Sum_probs=99.7
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
...+.+|||+++.++++.+.+.|... ++.+..+||++++++|.++++.+..|..+|+|||+++++||+||+|.
T Consensus 274 ~~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~ 346 (410)
T 2j0s_A 274 LTITQAVIFCNTKRKVDWLTEKMREA-------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVS 346 (410)
T ss_dssp HTSSEEEEECSSHHHHHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEE
T ss_pred cCCCcEEEEEcCHHHHHHHHHHHHhC-------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCC
Confidence 35679999999999999999999764 46689999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHh
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYE 325 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~ 325 (735)
+||+. |+ |-|.+++.||+|||||.+ +|.||.+++..+..
T Consensus 347 ~Vi~~--------~~----------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~ 386 (410)
T 2j0s_A 347 LIINY--------DL----------PNNRELYIHRIGRSGRYGRKGVAINFVKNDDIR 386 (410)
T ss_dssp EEEES--------SC----------CSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHH
T ss_pred EEEEE--------CC----------CCCHHHHHHhcccccCCCCceEEEEEecHHHHH
Confidence 99984 43 346788999999999985 69999999987754
No 31
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.84 E-value=3.1e-20 Score=203.40 Aligned_cols=111 Identities=17% Similarity=0.246 Sum_probs=98.9
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
...+.+|||+++.++++.+.+.|... ++.+..+||+++.++|.++++.+..|..+|++||+++++|+++|++.
T Consensus 248 ~~~~~~lvf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 248 LEFNQVVIFVKSVQRCIALAQLLVEQ-------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 46789999999999999999999764 45689999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhH
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRY 324 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~ 324 (735)
+||+.+ + |.|.+++.||+|||||.+ +|.|+.+++....
T Consensus 321 ~Vi~~~--------~----------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 321 IAFNYD--------M----------PEDSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp EEEESS--------C----------CSSHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred EEEEeC--------C----------CCCHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 999844 2 347889999999999985 6999999997643
No 32
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.83 E-value=2.2e-20 Score=208.62 Aligned_cols=105 Identities=21% Similarity=0.273 Sum_probs=94.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEe
Q 047202 193 AILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFD 272 (735)
Q Consensus 193 ~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VID 272 (735)
.+|||+++..+++.+.+.|... ++.+..+||++++++|.++++.|..|..+|+|||++|++||+||+|.+||+
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~ 374 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK-------EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN 374 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT-------TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC-------CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE
Confidence 4999999999999999999764 467999999999999999999999999999999999999999999999999
Q ss_pred CCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehh
Q 047202 273 CGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRH 322 (735)
Q Consensus 273 sG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~ 322 (735)
||. |.|..++.||+|||||.+ .|.|+.+|+.+
T Consensus 375 --------~d~----------p~~~~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 375 --------YDM----------PSKIDDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp --------SSC----------CSSHHHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred --------ECC----------CCCHHHHHHHhcccccCCCCCEEEEEEecc
Confidence 443 336788999999999986 49999999854
No 33
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.83 E-value=2.1e-20 Score=215.48 Aligned_cols=124 Identities=15% Similarity=0.220 Sum_probs=104.6
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE 259 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE 259 (735)
.+...+......+.+|||+++..+++.+++.|..... .++.+..+||+|++++|.++++.+..|..+|+|||++++
T Consensus 328 ~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~ 403 (563)
T 3i5x_A 328 HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK----KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA 403 (563)
T ss_dssp HHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT----TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred HHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhh
Confidence 3344444445678999999999999999999976531 246699999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHh
Q 047202 260 TSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYE 325 (735)
Q Consensus 260 tsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~ 325 (735)
+||+||+|++||+. |+ |.|..++.||+|||||.+ +|.|+.+++..+..
T Consensus 404 ~GiDip~v~~VI~~--------~~----------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~ 452 (563)
T 3i5x_A 404 RGMDFPNVHEVLQI--------GV----------PSELANYIHRIGRTARSGKEGSSVLFICKDELP 452 (563)
T ss_dssp SSCCCTTCCEEEEE--------SC----------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHH
T ss_pred cCCCcccCCEEEEE--------CC----------CCchhhhhhhcCccccCCCCceEEEEEchhHHH
Confidence 99999999999984 43 236788999999999986 69999999976543
No 34
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=6.9e-20 Score=212.02 Aligned_cols=123 Identities=15% Similarity=0.223 Sum_probs=104.2
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAE 259 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAE 259 (735)
.+...+....+.+.+|||+++..+++.+++.|..... .++.+..+||+|++++|.++++.+..|..+|+|||++++
T Consensus 277 ~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~----~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~ 352 (579)
T 3sqw_A 277 HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK----KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGA 352 (579)
T ss_dssp HHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT----TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGT
T ss_pred HHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc----CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhh
Confidence 3444444445678999999999999999999976531 246699999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhH
Q 047202 260 TSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRY 324 (735)
Q Consensus 260 tsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~ 324 (735)
+||+||+|++||+. ++ |.|..++.||+|||||.+ +|.|+.+++..+.
T Consensus 353 ~GiDip~v~~VI~~--------~~----------p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~ 400 (579)
T 3sqw_A 353 RGMDFPNVHEVLQI--------GV----------PSELANYIHRIGRTARSGKEGSSVLFICKDEL 400 (579)
T ss_dssp SSCCCTTCCEEEEE--------SC----------CSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGH
T ss_pred cCCCcccCCEEEEc--------CC----------CCCHHHhhhhccccccCCCCceEEEEEcccHH
Confidence 99999999999984 43 236688999999999987 5999999998654
No 35
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.82 E-value=2e-21 Score=219.62 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCC
Q 047202 185 VDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITI 264 (735)
Q Consensus 185 i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitI 264 (735)
+......+.+|||+++..+++.+.+.|... +..+..+||++++.+|.++++.|..|..+|+|||+++++||+|
T Consensus 327 ~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~-------~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDi 399 (479)
T 3fmp_B 327 LYGAITIAQAMIFCHTRKTASWLAAELSKE-------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDV 399 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhccCCceEEEeCcHHHHHHHHHHHHhC-------CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCcc
Confidence 333345678999999999999999988754 4568999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-cEEEEceehhh
Q 047202 265 DDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-GICYSLYTRHR 323 (735)
Q Consensus 265 pdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G~c~rL~t~~~ 323 (735)
|+|++||+.+.+.... .|.|.+++.||+|||||.+. |.|+.+|+...
T Consensus 400 p~v~~VI~~d~p~~~~------------~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 400 EQVSVVINFDLPVDKD------------GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp ------------------------------------------------------------
T ss_pred ccCCEEEEecCCCCCc------------cCCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 9999999955433221 24577889999999999765 99999998654
No 36
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.81 E-value=5.3e-21 Score=209.64 Aligned_cols=113 Identities=16% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
...+.+|||+++.++++.+.+.|... ++.+..+||+++.++|.++++.+..|..+|+|||+++++|+++|++.
T Consensus 257 ~~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~ 329 (394)
T 1fuu_A 257 ISVTQAVIFCNTRRKVEELTTKLRND-------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVS 329 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHHc-------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCC
Confidence 35678999999999999999988754 46689999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHhh
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYEK 326 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~~ 326 (735)
+||+.+ + |.|.+++.||+|||||.+ +|.||.+++..+...
T Consensus 330 ~Vi~~~--------~----------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~ 370 (394)
T 1fuu_A 330 LVINYD--------L----------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVGA 370 (394)
T ss_dssp -----------------------------------------------------------
T ss_pred EEEEeC--------C----------CCCHHHHHHHcCcccCCCCCceEEEEEchhHHHH
Confidence 999844 2 457788899999999985 699999999886544
No 37
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.81 E-value=7.5e-21 Score=216.60 Aligned_cols=122 Identities=15% Similarity=0.214 Sum_probs=83.9
Q ss_pred HHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccC
Q 047202 182 VCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETS 261 (735)
Q Consensus 182 l~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEts 261 (735)
+..+......+.+|||+++.++++.+.+.|... +..+..+||+++..+|+++++.++.|..+|+|||+++++|
T Consensus 348 l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~-------~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~G 420 (508)
T 3fho_A 348 LVELYGLLTIGQSIIFCKKKDTAEEIARRMTAD-------GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARG 420 (508)
T ss_dssp HHHHHC---CCCEEEBCSSTTTTTHHHHHHTTT-------TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----
T ss_pred HHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcC
Confidence 344444456789999999999999999988653 4568999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehh
Q 047202 262 ITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRH 322 (735)
Q Consensus 262 itIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~ 322 (735)
|+||+|++||+.+.++.. ..+-|..++.||+|||||.+ +|.|+.+++..
T Consensus 421 iDip~v~~VI~~~~p~~~------------~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~ 470 (508)
T 3fho_A 421 IDVSQVNLVVNYDMPLDQ------------AGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470 (508)
T ss_dssp CCCTTCCEEEC----CC-----------------CTHHHHHTTSCCC-----CEEEEEECTT
T ss_pred CCccCCCEEEEECCCCcc------------cCCCCHHHHHHHhhhcCCCCCCcEEEEEEeCh
Confidence 999999999985433211 12356788999999999986 59999999853
No 38
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.79 E-value=1.4e-19 Score=193.72 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=91.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
...+.+|||+++.++++.+.+.|. .+..+||+++.++|.++++.+..|..+|++||+++++|+++|+++
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~-----------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 286 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD-----------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVE 286 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT-----------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBS
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh-----------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCC
Confidence 467899999999999998877654 278899999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEcee
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYT 320 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t 320 (735)
+||+.+ + |.|.+++.||+|||||.+ +|.|+.+++
T Consensus 287 ~Vi~~~--------~----------~~s~~~~~Q~~GR~gR~g~~g~~~~~~~ 321 (337)
T 2z0m_A 287 KVINFD--------A----------PQDLRTYIHRIGRTGRMGRKGEAITFIL 321 (337)
T ss_dssp EEEESS--------C----------CSSHHHHHHHHTTBCGGGCCEEEEEEES
T ss_pred EEEEec--------C----------CCCHHHhhHhcCccccCCCCceEEEEEe
Confidence 999843 3 336788999999999985 699999988
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.77 E-value=2e-18 Score=197.66 Aligned_cols=130 Identities=18% Similarity=0.156 Sum_probs=81.0
Q ss_pred HHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCC-----CCCcEEEEecCCCCHHHHHHhcCCCCC-CccE
Q 047202 177 LLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGG-----PSSDWLLALHSSVASVDQKKVFLRPPE-KIRK 250 (735)
Q Consensus 177 li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~-----~~~~~i~~LHs~l~~~eq~~vf~~~~~-g~rk 250 (735)
.+.+++.......+.+.+|||+++...++.+.+.|........ -.+.....+||+|++++|.++++.|.. |..+
T Consensus 375 ~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~ 454 (555)
T 3tbk_A 375 DLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN 454 (555)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCS
T ss_pred HHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCee
Confidence 3344444444445678999999999999999999976421110 012235567889999999999999998 9999
Q ss_pred EEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHh
Q 047202 251 VIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYE 325 (735)
Q Consensus 251 VIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~ 325 (735)
|+|||+++++||+||+|.+||+ ||+..+.. ++.||+|| ||..+|.||.|+++...+
T Consensus 455 vLvaT~~~~~GlDlp~v~~VI~--------~d~p~s~~----------~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 455 ILIATSVADEGIDIAECNLVIL--------YEYVGNVI----------KMIQTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp EEEECCCTTCCEETTSCSEEEE--------ESCCSSCC----------CEECSSCC-CTTTSCEEEEEESCHHHH
T ss_pred EEEEcchhhcCCccccCCEEEE--------eCCCCCHH----------HHHHhcCc-CcCCCceEEEEEcCCCHH
Confidence 9999999999999999999998 67655444 34599999 999999999999987653
No 40
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.76 E-value=2.5e-18 Score=197.28 Aligned_cols=119 Identities=19% Similarity=0.154 Sum_probs=58.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCC-----CCCcEEEEecCCCCHHHHHHhcCCCCC-CccEEEEeccccccCC
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGG-----PSSDWLLALHSSVASVDQKKVFLRPPE-KIRKVIIATNIAETSI 262 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~-----~~~~~i~~LHs~l~~~eq~~vf~~~~~-g~rkVIlaTnIAEtsi 262 (735)
.+.+.+|||+++...++.+.+.|.....+.. -.+.....+||++++++|.++++.|.. |..+|+|||+++++||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 5678999999999999999999976421111 012335567999999999999999999 9999999999999999
Q ss_pred CCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhh
Q 047202 263 TIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEK 326 (735)
Q Consensus 263 tIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~ 326 (735)
|||+|.+||+ ||+. -|..++.||+|| ||.++|.||.|+++...+.
T Consensus 468 Dip~v~~VI~--------~d~p----------~s~~~~~Qr~GR-gR~~~g~~~~l~~~~~~~~ 512 (556)
T 4a2p_A 468 DIVQCNLVVL--------YEYS----------GNVTKMIQVRGR-GRAAGSKCILVTSKTEVVE 512 (556)
T ss_dssp -----CEEEE--------ETCC----------SCHHHHHHC---------CCEEEEESCHHHHH
T ss_pred CchhCCEEEE--------eCCC----------CCHHHHHHhcCC-CCCCCceEEEEEeCcchHH
Confidence 9999999998 6653 367889999999 9999999999999877643
No 41
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.75 E-value=2.7e-18 Score=192.26 Aligned_cols=124 Identities=20% Similarity=0.259 Sum_probs=103.0
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecC--------CCCHHHHHHhcCCCCCCcc
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHS--------SVASVDQKKVFLRPPEKIR 249 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs--------~l~~~eq~~vf~~~~~g~r 249 (735)
+.+++.......+++.+|||+++...++.+.+.|... ++.+..+|| +++.++|+++++.|..|..
T Consensus 348 l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~ 420 (494)
T 1wp9_A 348 LKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD-------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEF 420 (494)
T ss_dssp HHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT-------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc-------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCc
Confidence 3344444333356889999999999999999999765 466899999 9999999999999999999
Q ss_pred EEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHhh
Q 047202 250 KVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYEK 326 (735)
Q Consensus 250 kVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~~ 326 (735)
+|+|||+++++|||+|++.+||. ||+ |-|.+++.||+|||||.++|.||+|+++...+.
T Consensus 421 ~vLv~T~~~~~Gldl~~~~~Vi~--------~d~----------~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 421 NVLVATSVGEEGLDVPEVDLVVF--------YEP----------VPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDE 479 (494)
T ss_dssp SEEEECGGGGGGGGSTTCCEEEE--------SSC----------CHHHHHHHHHHTTSCSCCCSEEEEEEETTSHHH
T ss_pred eEEEECCccccCCCchhCCEEEE--------eCC----------CCCHHHHHHHHhhccCCCCceEEEEEecCCHHH
Confidence 99999999999999999999997 443 347888999999999999999999999876654
No 42
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.73 E-value=6.6e-19 Score=208.29 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=86.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCC--------CCHHHHHHhcCCCCCCccEEEEeccccccCC
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSS--------VASVDQKKVFLRPPEKIRKVIIATNIAETSI 262 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~--------l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsi 262 (735)
.+.+|||+++...++.+.+.|.....+.. .++.+..+||+ |++++|.++++.|..|..+|+|||+++++||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~-~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAE-VGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccc-cCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 78999999999999999999986532221 24678999999 9999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEcee
Q 047202 263 TIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYT 320 (735)
Q Consensus 263 tIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t 320 (735)
|||+|++||. ||+. -|.+++.||+|||||.+ +.|+.+++
T Consensus 479 Dip~v~~VI~--------~d~p----------~s~~~~~Qr~GRArr~g-~~~~l~~~ 517 (699)
T 4gl2_A 479 DIKECNIVIR--------YGLV----------TNEIAMVQARGRARADE-STYVLVAH 517 (699)
T ss_dssp CCCSCCCCEE--------ESCC----------CCHHHHHHHHTTSCSSS-CEEEEEEE
T ss_pred ccccCCEEEE--------eCCC----------CCHHHHHHHcCCCCCCC-ceEEEEEe
Confidence 9999999997 6643 36788999999998764 44444433
No 43
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.73 E-value=2.3e-17 Score=203.50 Aligned_cols=111 Identities=21% Similarity=0.251 Sum_probs=95.5
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
.+|.++||+|+.++++.+.+.|.... ++..+..+||+|+..+|.++++.|..|..+|+|||+++|+||+||++.+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~-----p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~ 885 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV-----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 885 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC-----TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC-----CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcE
Confidence 57899999999999999999998753 2466999999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRH 322 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~ 322 (735)
||- +++.. .+.+++.||+||+||.+ +|.||.+++..
T Consensus 886 VIi--------~~~~~---------~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 886 III--------ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp EEE--------TTTTS---------SCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred EEE--------eCCCC---------CCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 995 33211 23467899999999976 69999998754
No 44
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.72 E-value=5.2e-18 Score=187.86 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=86.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEE-EecCCCCHHHHHHhcCCCCCCccEEEEe----ccccccCCCCC
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLL-ALHSSVASVDQKKVFLRPPEKIRKVIIA----TNIAETSITID 265 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~-~LHs~l~~~eq~~vf~~~~~g~rkVIla----TnIAEtsitIp 265 (735)
++.+|||+++..+++.+.+.|... ++.+. .+||. +++ ++.|..|..+|+|| |+++++||+||
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~h~~-----~r~-~~~f~~g~~~vLvat~s~T~~~~~GiDip 318 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRF-------KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLP 318 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHT-------TCCEEESSSCH-----HHH-HHHHHTTSCSEEEEECCTTCCCCCCCCCT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-------CCceehhhcCc-----chH-HHHHhCCCCeEEEEecCcCchhhccCccc
Confidence 478999999999999999999764 45676 88984 333 77888999999999 99999999999
Q ss_pred C-eEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-----CcEEEEceehh
Q 047202 266 D-VVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-----PGICYSLYTRH 322 (735)
Q Consensus 266 d-V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-----~G~c~rL~t~~ 322 (735)
+ |++||+.|.++. .|.+++.||+|||||.+ +|.||.++...
T Consensus 319 ~~v~~VI~~~~p~~----------------~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~ 365 (414)
T 3oiy_A 319 ERIKYVIFWGTPSG----------------PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDE 365 (414)
T ss_dssp TTCCEEEEESCCTT----------------TCHHHHHHHHGGGCCEETTEECCEEEEEECCCH
T ss_pred cccCEEEEECCCCC----------------CCHHHHHHHhCccccCCCCCCcceEEEEEEccH
Confidence 9 999998543321 46789999999999985 69999999544
No 45
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.72 E-value=1.1e-18 Score=206.28 Aligned_cols=109 Identities=19% Similarity=0.318 Sum_probs=85.9
Q ss_pred CCCcEEEEcCCHHHH--------HHHHHHHHh-hhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccccc
Q 047202 190 GEGAILVFLPGVAEI--------HILLDRLAA-SYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAET 260 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI--------~~l~~~L~~-~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEt 260 (735)
.++.++||+|..++. +.+.+.|.. .. +++.+..+||+|++++|.++++.|..|..+|+|||+++|+
T Consensus 577 ~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~-----~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~ 651 (780)
T 1gm5_A 577 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF-----PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEV 651 (780)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGGSCC--------CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCS
T ss_pred cCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhc-----CCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCc
Confidence 467899999977653 444454543 11 2456899999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEcee
Q 047202 261 SITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYT 320 (735)
Q Consensus 261 sitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t 320 (735)
||+||++++||. ||+.. .+.+++.||+|||||.+ +|.||.+++
T Consensus 652 GIDiP~v~~VIi--------~d~~r---------~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 652 GIDVPRANVMVI--------ENPER---------FGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp CSCCTTCCEEEB--------CSCSS---------SCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred cccCCCCCEEEE--------eCCCC---------CCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 999999999997 45432 24578889999999965 699999997
No 46
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=155.71 Aligned_cols=128 Identities=16% Similarity=0.249 Sum_probs=103.2
Q ss_pred HHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccc
Q 047202 179 EDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIA 258 (735)
Q Consensus 179 ~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIA 258 (735)
...+..+......+.+|||+++...++.+.+.|... ++.+..+||++++.+|.++++.|..|..+|+|||+++
T Consensus 22 ~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~ 94 (175)
T 2rb4_A 22 YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD-------GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVC 94 (175)
T ss_dssp HHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT-------TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSC
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecch
Confidence 344555555567789999999999999999999764 4669999999999999999999999999999999999
Q ss_pred ccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHh
Q 047202 259 ETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYE 325 (735)
Q Consensus 259 EtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~ 325 (735)
++|+++|++.+||+.+.+.. + ..+.|..++.||+|||||.+ +|.||.+++..+..
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~----~--------~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVK----Q--------GEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--------------CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHH
T ss_pred hcCCCcccCCEEEEeCCCCC----c--------cccCCHHHHHHHhcccccCCCCceEEEEEccchHH
Confidence 99999999999998543311 0 12267899999999999985 59999999987643
No 47
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.69 E-value=4.2e-17 Score=195.53 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=63.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCC-----CCcEEEEecCCCCHHHHHHhcCCCCC-CccEEEEeccccccCC
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGP-----SSDWLLALHSSVASVDQKKVFLRPPE-KIRKVIIATNIAETSI 262 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~-----~~~~i~~LHs~l~~~eq~~vf~~~~~-g~rkVIlaTnIAEtsi 262 (735)
.+++.+|||+++...++.+.+.|.....+.+- .+.....+||++++.+|.++++.|.. |..+|+|||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 46789999999999999999999764221110 12335677999999999999999998 9999999999999999
Q ss_pred CCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHh
Q 047202 263 TIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYE 325 (735)
Q Consensus 263 tIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~ 325 (735)
+||+|.+||. ||+. -|..++.||+|| ||.++|.||+|+++...+
T Consensus 709 Dlp~v~~VI~--------yd~p----------~s~~~~iQr~GR-GR~~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 709 DIVQCNLVVL--------YEYS----------GNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCCSEEEE--------ESCC----------SCHHHHHTC--------CCCEEEEECCHHHH
T ss_pred CchhCCEEEE--------eCCC----------CCHHHHHHhcCC-CCCCCceEEEEEeCCcHH
Confidence 9999999998 6653 367889999999 999999999999987654
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.68 E-value=1.4e-16 Score=193.58 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=64.4
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCC-----CCcEEEEecCCCCHHHHHHhcCCCCC-CccEEEEeccccccCC
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGP-----SSDWLLALHSSVASVDQKKVFLRPPE-KIRKVIIATNIAETSI 262 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~-----~~~~i~~LHs~l~~~eq~~vf~~~~~-g~rkVIlaTnIAEtsi 262 (735)
.+.+.+|||+++...++.+.+.|.....+.+- .+.....+||++++.+|.++++.|.. |..+|+|||+++++||
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 46789999999999999999999865222110 02235567999999999999999998 9999999999999999
Q ss_pred CCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhhHh
Q 047202 263 TIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHRYE 325 (735)
Q Consensus 263 tIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~~~ 325 (735)
|||+|.+||. ||+. -|.+++.||+|| ||.++|.||.|+++...+
T Consensus 709 Dlp~v~~VI~--------yD~p----------~s~~~~iQr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 709 DIVQCNLVVL--------YEYS----------GNVTKMIQVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp -CCCCSEEEE--------ESCC----------SCSHHHHCC--------CCCEEEEESCHHHH
T ss_pred cchhCCEEEE--------eCCC----------CCHHHHHHhcCC-CCCCCCEEEEEEeCCCHH
Confidence 9999999998 7753 356788899999 999999999999987654
No 49
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.68 E-value=7.2e-17 Score=155.56 Aligned_cols=120 Identities=15% Similarity=0.237 Sum_probs=99.4
Q ss_pred HHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccccc
Q 047202 181 LVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAET 260 (735)
Q Consensus 181 ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEt 260 (735)
.+..+.+..+.+.+|||+++.+.++.+.+.|... ++.+..+||++++.+|.++++.+..|..+|++||+++++
T Consensus 20 ~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 92 (165)
T 1fuk_A 20 CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND-------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLAR 92 (165)
T ss_dssp HHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTT
T ss_pred HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhc
Confidence 3334444456789999999999999999999764 466999999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHh
Q 047202 261 SITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYE 325 (735)
Q Consensus 261 sitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~ 325 (735)
|+++|++.+||+. |+ |.|.+++.||+|||||.+ +|.||.+++..+..
T Consensus 93 G~d~~~~~~Vi~~--------~~----------p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 140 (165)
T 1fuk_A 93 GIDVQQVSLVINY--------DL----------PANKENYIHRIGRGGRFGRKGVAINFVTNEDVG 140 (165)
T ss_dssp TCCCCSCSEEEES--------SC----------CSSGGGGGGSSCSCC-----CEEEEEEETTTHH
T ss_pred CCCcccCCEEEEe--------CC----------CCCHHHHHHHhcccccCCCCceEEEEEcchHHH
Confidence 9999999999994 43 336677889999999985 69999999976543
No 50
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.67 E-value=1.3e-16 Score=153.46 Aligned_cols=114 Identities=20% Similarity=0.264 Sum_probs=100.4
Q ss_pred ccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCC
Q 047202 187 ETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDD 266 (735)
Q Consensus 187 ~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpd 266 (735)
....++.+|||+++..+++.+.+.|... ++.+..+||++++.+|..+++.|..|..+|++||+++++|+++|+
T Consensus 31 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~ 103 (163)
T 2hjv_A 31 MTENPDSCIIFCRTKEHVNQLTDELDDL-------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIEN 103 (163)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSC
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhc
Confidence 3346789999999999999999999764 466999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHh
Q 047202 267 VVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYE 325 (735)
Q Consensus 267 V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~ 325 (735)
+.+||+ ||+ |.|.+++.||+|||||.+ +|.|+.+++..+..
T Consensus 104 ~~~Vi~--------~~~----------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 104 ISLVIN--------YDL----------PLEKESYVHRTGRTGRAGNKGKAISFVTAFEKR 145 (163)
T ss_dssp CSEEEE--------SSC----------CSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHH
T ss_pred CCEEEE--------eCC----------CCCHHHHHHhccccCcCCCCceEEEEecHHHHH
Confidence 999998 443 457889999999999985 69999999976543
No 51
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.63 E-value=2.7e-16 Score=154.52 Aligned_cols=111 Identities=20% Similarity=0.261 Sum_probs=85.0
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
.+.+.+|||+++...++.+.+.|... ++.+..+||++++.+|.++++.|..|..+|+|||+++++|+++|++.
T Consensus 44 ~~~~k~lVF~~~~~~~~~l~~~L~~~-------g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~ 116 (185)
T 2jgn_A 44 GKDSLTLVFVETKKGADSLEDFLYHE-------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVK 116 (185)
T ss_dssp -CCSCEEEEESCHHHHHHHHHHHHHT-------TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBS
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHc-------CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCC
Confidence 35789999999999999999999764 46799999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhH
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRY 324 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~ 324 (735)
+||+ ||+ |.|.+++.||+|||||.+ +|.|+.+++..+.
T Consensus 117 ~VI~--------~d~----------p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 155 (185)
T 2jgn_A 117 HVIN--------FDL----------PSDIEEYVHRIGRTGRVGNLGLATSFFNERNI 155 (185)
T ss_dssp EEEE--------SSC----------CSSHHHHHHHHTTBCCTTSCEEEEEEECGGGG
T ss_pred EEEE--------eCC----------CCCHHHHHHHccccCCCCCCcEEEEEEchhhH
Confidence 9998 553 347888999999999986 6999999997654
No 52
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.62 E-value=4.5e-16 Score=151.14 Aligned_cols=117 Identities=17% Similarity=0.270 Sum_probs=101.3
Q ss_pred HHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccccc
Q 047202 181 LVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAET 260 (735)
Q Consensus 181 ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEt 260 (735)
.+..+.+..+.+.+|||+++..+++.+.+.|... ++.+..+||+|++.+|.++++.|..|..+|+|||+++++
T Consensus 21 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 93 (172)
T 1t5i_A 21 KLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGR 93 (172)
T ss_dssp HHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCST
T ss_pred HHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc-------CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhc
Confidence 3444444456789999999999999999999764 466899999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehh
Q 047202 261 SITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRH 322 (735)
Q Consensus 261 sitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~ 322 (735)
|+++|++.+||+ ||+ |.|.+++.||+|||||.+ +|.|+.+++..
T Consensus 94 Gldi~~~~~Vi~--------~d~----------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 94 GMDIERVNIAFN--------YDM----------PEDSDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp TCCGGGCSEEEE--------SSC----------CSSHHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred CcchhhCCEEEE--------ECC----------CCCHHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 999999999998 443 346788999999999986 59999999864
No 53
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.61 E-value=4.1e-15 Score=173.88 Aligned_cols=113 Identities=19% Similarity=0.108 Sum_probs=98.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
.++.+|||+++...++.+.+.|... ++.+..+||++++.+|.++++.++.|..+|++|||++++|++||+|.+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~-------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~l 510 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH-------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSL 510 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc-------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCE
Confidence 4679999999999999999999765 456888999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRH 322 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~ 322 (735)
||.++..+. + .+.|..++.||+|||||.++|.|+.+++..
T Consensus 511 VI~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~ 550 (664)
T 1c4o_A 511 VAILDADKE-------G------FLRSERSLIQTIGRAARNARGEVWLYADRV 550 (664)
T ss_dssp EEETTTTSC-------S------GGGSHHHHHHHHGGGTTSTTCEEEEECSSC
T ss_pred EEEeCCccc-------C------CCCCHHHHHHHHCccCcCCCCEEEEEEcCC
Confidence 999653222 1 145778999999999999999999998764
No 54
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.2e-15 Score=150.70 Aligned_cols=107 Identities=20% Similarity=0.284 Sum_probs=94.9
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEEE
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYV 270 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~V 270 (735)
++.+|||+++..+++.+.+.|... ++.+..+||++++++|.++++.|..|..+|+|||+++++|++||++.+|
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~-------g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~V 126 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK-------GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHV 126 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH-------TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEE
Confidence 568999999999999999999765 4668999999999999999999999999999999999999999999999
Q ss_pred EeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehh
Q 047202 271 FDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRH 322 (735)
Q Consensus 271 IDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~ 322 (735)
|+ ||+ |.|..++.||+|||||.+ +|.|+.+++..
T Consensus 127 I~--------~d~----------p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 127 IN--------YDM----------PEEIENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp EE--------SSC----------CSSHHHHHHHHTTSCC---CCEEEEEECTT
T ss_pred EE--------eCC----------CCCHHHHHHHhCccccCCCCcEEEEEEcCc
Confidence 98 553 346788999999999986 59999999864
No 55
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.60 E-value=1.6e-16 Score=195.01 Aligned_cols=74 Identities=16% Similarity=0.125 Sum_probs=66.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEE-EecCCCCHHHHHHhcCCCCCCccEEEEe----ccccccCCCCC
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLL-ALHSSVASVDQKKVFLRPPEKIRKVIIA----TNIAETSITID 265 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~-~LHs~l~~~eq~~vf~~~~~g~rkVIla----TnIAEtsitIp 265 (735)
++.+|||+++.++++.+.+.|... ++.+. .+|| +|++ ++.|..|..+|+|| |+++++|||||
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~-------g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip 375 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRF-------KFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLP 375 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHT-------TCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCT
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC-------CCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCC
Confidence 489999999999999999999764 45677 9999 2555 88899999999999 99999999999
Q ss_pred C-eEEEEeCCccc
Q 047202 266 D-VVYVFDCGRHK 277 (735)
Q Consensus 266 d-V~~VIDsG~~k 277 (735)
+ |++||+.|.++
T Consensus 376 ~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 376 ERIKYVIFWGTPS 388 (1104)
T ss_dssp TTCCEEEEESCCE
T ss_pred CCCCEEEEECCCC
Confidence 9 99999999988
No 56
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.39 E-value=7.4e-17 Score=156.32 Aligned_cols=120 Identities=24% Similarity=0.251 Sum_probs=101.9
Q ss_pred HHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecccccc
Q 047202 181 LVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAET 260 (735)
Q Consensus 181 ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEt 260 (735)
++..+.+..+.+.+|||+++..+++.+.+.|... ++.+..+||++++.+|..+++.|..|..+|++||+++++
T Consensus 20 ~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 92 (170)
T 2yjt_D 20 LLVHLLKQPEATRSIVFVRKRERVHELANWLREA-------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAAR 92 (170)
Confidence 3344444446789999999999999999988754 466899999999999999999999999999999999999
Q ss_pred CCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhhHh
Q 047202 261 SITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHRYE 325 (735)
Q Consensus 261 sitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~~~ 325 (735)
|+++|++.+||+. |+ |.|.+++.||+|||||.+ +|.|+.+++..+..
T Consensus 93 Gid~~~~~~Vi~~--------~~----------p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~ 140 (170)
T 2yjt_D 93 GIDIPDVSHVFNF--------DM----------PRSGDTYLHRIGRTARAGRKGTAISLVEAHDHL 140 (170)
Confidence 9999999999984 42 346778889999999986 69999999876543
No 57
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.59 E-value=6.1e-15 Score=172.35 Aligned_cols=114 Identities=19% Similarity=0.118 Sum_probs=99.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeEE
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVVY 269 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~ 269 (735)
.++.+|||+++...++.+.+.|... ++.+..+||++++.+|.++++.++.|..+|++|||++++|++||+|.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~-------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~l 516 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI-------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSL 516 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc-------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCE
Confidence 4679999999999999999999765 466888999999999999999999999999999999999999999999
Q ss_pred EEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcEEEEceehhh
Q 047202 270 VFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGICYSLYTRHR 323 (735)
Q Consensus 270 VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~c~rL~t~~~ 323 (735)
||.++..+. + .+.|..++.||+|||||.++|.|+.+++...
T Consensus 517 Vi~~d~d~~-------G------~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~ 557 (661)
T 2d7d_A 517 VAILDADKE-------G------FLRSERSLIQTIGRAARNAEGRVIMYADKIT 557 (661)
T ss_dssp EEETTTTCC-------T------TTTSHHHHHHHHHTTTTSTTCEEEEECSSCC
T ss_pred EEEeCcccc-------c------CCCCHHHHHHHhCcccCCCCCEEEEEEeCCC
Confidence 998653221 1 1447788999999999999999999988653
No 58
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.57 E-value=3e-15 Score=170.24 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=91.3
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEec-c
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIAT-N 256 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaT-n 256 (735)
+.+++..... .....++||.. .++++.+.+.|.... ..+..+||+++.++|+++++.+.+|..+|+||| +
T Consensus 336 l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~~~-------~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~ 406 (510)
T 2oca_A 336 IAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKNEY-------DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYG 406 (510)
T ss_dssp HHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHTTC-------SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHH
T ss_pred HHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHHcC-------CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcC
Confidence 3444444333 23345667766 888988888887642 258999999999999999999999999999999 9
Q ss_pred ccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCcE-EEEcee
Q 047202 257 IAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPGI-CYSLYT 320 (735)
Q Consensus 257 IAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G~-c~rL~t 320 (735)
++++||+||++.+||. |++. -|.+++.||+|||||.++|. ++.+|+
T Consensus 407 ~~~~GiDip~v~~vi~--------~~~~----------~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 407 VFSTGISVKNLHHVVL--------AHGV----------KSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHSCCCCSEEEEEE--------SSCC----------CSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred hhhcccccccCcEEEE--------eCCC----------CCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999997 4432 35578899999999998854 777776
No 59
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.55 E-value=6.2e-16 Score=189.61 Aligned_cols=74 Identities=7% Similarity=0.015 Sum_probs=59.3
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEe----ccccccCCCCCC
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIA----TNIAETSITIDD 266 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIla----TnIAEtsitIpd 266 (735)
++.+|||+++..+++.+.+.|... +.+..+||++. ++++.|..|..+|+|| ||++++|||||+
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~--------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~ 341 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK--------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPE 341 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS--------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTT
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc--------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCC
Confidence 578999999999999999888643 46999999984 4555677899999999 999999999999
Q ss_pred e-EEEEeCCccc
Q 047202 267 V-VYVFDCGRHK 277 (735)
Q Consensus 267 V-~~VIDsG~~k 277 (735)
| ++||+.|.++
T Consensus 342 VI~~VI~~~~P~ 353 (1054)
T 1gku_B 342 RIRFAVFVGCPS 353 (1054)
T ss_dssp TCCEEEEESCCE
T ss_pred cccEEEEeCCCc
Confidence 5 9999999983
No 60
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.54 E-value=8.1e-16 Score=173.25 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=92.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCeE
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDVV 268 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~ 268 (735)
..++.+|||+++.+.++.+.+.|. +..+||+++..+|+++++.|..|..+|+|||+++++|+++|++.
T Consensus 347 ~~~~k~lvF~~~~~~~~~l~~~l~------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~ 414 (472)
T 2fwr_A 347 HRKDKIIIFTRHNELVYRISKVFL------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDAN 414 (472)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHTT------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBS
T ss_pred CCCCcEEEEECCHHHHHHHHHHhC------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCc
Confidence 567899999999999998888763 44589999999999999999999999999999999999999999
Q ss_pred EEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCCc----EEEEceehhhHhh
Q 047202 269 YVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKPG----ICYSLYTRHRYEK 326 (735)
Q Consensus 269 ~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~G----~c~rL~t~~~~~~ 326 (735)
+||. ||+. -|.+.+.||+|||||.++| .+|.++++...+.
T Consensus 415 ~Vi~--------~~~~----------~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee 458 (472)
T 2fwr_A 415 VGVI--------MSGS----------GSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEV 458 (472)
T ss_dssp EEEE--------ECCS----------SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC--
T ss_pred EEEE--------ECCC----------CCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchH
Confidence 9998 5533 3567899999999999877 6888888765543
No 61
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.39 E-value=1.4e-12 Score=150.93 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=83.1
Q ss_pred HHccCCCCcEEEEcCCHHHHHHHHHHHHhhhcc-CCCCCcEEEEecCCCCHHHHHHhcCCCCCCccE---EEEecccccc
Q 047202 185 VDETCGEGAILVFLPGVAEIHILLDRLAASYRF-GGPSSDWLLALHSSVASVDQKKVFLRPPEKIRK---VIIATNIAET 260 (735)
Q Consensus 185 i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~-~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rk---VIlaTnIAEt 260 (735)
+....+.+.+|||++..+.++.+.+.|...... .......+..+||.++ ++++++++.|..|..+ |++||+++++
T Consensus 433 l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~ 511 (590)
T 3h1t_A 433 MKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTT 511 (590)
T ss_dssp HHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTT
T ss_pred HHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhc
Confidence 333345689999999999999999998754210 0111224788999975 3678888888776655 8889999999
Q ss_pred CCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC
Q 047202 261 SITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP 312 (735)
Q Consensus 261 sitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~ 312 (735)
||+||+|.+||. |++. -|...+.||+||+||.++
T Consensus 512 GiDip~v~~Vi~--------~~~~----------~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 512 GVDAPTCKNVVL--------ARVV----------NSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TCCCTTEEEEEE--------ESCC----------CCHHHHHHHHTTSCCCBG
T ss_pred CccchheeEEEE--------EecC----------CChHHHHHHHhhhcccCc
Confidence 999999999996 4432 367789999999999876
No 62
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.36 E-value=1.3e-12 Score=159.13 Aligned_cols=124 Identities=12% Similarity=0.097 Sum_probs=101.2
Q ss_pred HHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCc--cEEEEecc
Q 047202 179 EDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKI--RKVIIATN 256 (735)
Q Consensus 179 ~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~--rkVIlaTn 256 (735)
...+..+.....++.+|||++....++.+.+.|.... ++.+..+||++++.+|.++++.|..|. .+|+|||+
T Consensus 491 ~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~------g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 491 VEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRERE------GIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp HHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTT------CCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred HHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc
Confidence 3444444444578899999999999999999997532 466999999999999999999999987 99999999
Q ss_pred ccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC-c--EEEEceehhhHhh
Q 047202 257 IAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP-G--ICYSLYTRHRYEK 326 (735)
Q Consensus 257 IAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~-G--~c~rL~t~~~~~~ 326 (735)
++++||+||++.+||. ||+. -+.+.+.||.||+||.+. | .+|+++++...+.
T Consensus 565 v~~~GlDl~~~~~VI~--------~d~p----------~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee 619 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVM--------FDLP----------FNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQS 619 (968)
T ss_dssp CTTCSSCCTTCCEEEC--------SSCC----------SSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHH
T ss_pred hhhcCCCcccCcEEEE--------ecCC----------CCHHHHHHHhhccccCCCCceEEEEEecCCChHHH
Confidence 9999999999999997 5653 356788999999999765 4 5677777655443
No 63
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.31 E-value=1e-11 Score=144.67 Aligned_cols=106 Identities=24% Similarity=0.203 Sum_probs=89.1
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCC-----
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITID----- 265 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIp----- 265 (735)
+.++|||+.+.+..+.+.+.|... ++....|||.+...++..+.+.+.+| .|+||||+|.+|++|+
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~-------gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V 502 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNK-------GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGV 502 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTT-------TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC-------CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchh
Confidence 457999999999999999999865 56688999999888887777666665 6999999999999999
Q ss_pred ---CeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhh
Q 047202 266 ---DVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHR 323 (735)
Q Consensus 266 ---dV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~ 323 (735)
++.|||++.++ -|...+.||+||+||.| ||.++-+++.++
T Consensus 503 ~~~ggl~VIn~d~p------------------~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 503 KELGGLAVVGTERH------------------ESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp GGGTSEEEEESSCC------------------SSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred hhcCCcEEEEecCC------------------CCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 89999995433 35667889999999986 599998888654
No 64
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.28 E-value=8.7e-12 Score=142.24 Aligned_cols=106 Identities=24% Similarity=0.225 Sum_probs=84.7
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCC-----
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITID----- 265 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIp----- 265 (735)
+.++|||+++.+..+.+.+.|... ++....|||.....++..+...+.+| .|+||||+|.+|++|+
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~-------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V 544 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKK-------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGV 544 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTT-------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHC-------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcch
Confidence 558999999999999999999764 46678899996655555444444455 5999999999999998
Q ss_pred ---CeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-CcEEEEceehhh
Q 047202 266 ---DVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK-PGICYSLYTRHR 323 (735)
Q Consensus 266 ---dV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~-~G~c~rL~t~~~ 323 (735)
|+.+||++.++ -|...+.||+||+||.| ||.++-+++.++
T Consensus 545 ~~~GglhVInte~P------------------es~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 545 AELGGLCIIGTERH------------------ESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp TTTTSCEEEESSCC------------------SSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred hhcCCCEEEecCCC------------------CCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 77799995433 35666789999999987 599988888654
No 65
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.26 E-value=2.5e-11 Score=141.18 Aligned_cols=107 Identities=21% Similarity=0.175 Sum_probs=89.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCC---
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDD--- 266 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpd--- 266 (735)
.+.++|||+.+.+..+.+.+.|... ++....|||.....++..+.+.+.+| .|.||||+|.+|++|+.
T Consensus 440 ~gqpvLVft~sie~se~Ls~~L~~~-------gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn 510 (853)
T 2fsf_A 440 KGQPVLVGTISIEKSELVSNELTKA-------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGS 510 (853)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHT-------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCC
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHC-------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCc
Confidence 3557999999999999999999875 46678899999888888888888888 69999999999999997
Q ss_pred -----------------------------e-----EEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC-
Q 047202 267 -----------------------------V-----VYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK- 311 (735)
Q Consensus 267 -----------------------------V-----~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~- 311 (735)
| .|||++.++ -|+-.+.||+||+||.|
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~p------------------es~riy~qr~GRTGRqGd 572 (853)
T 2fsf_A 511 WQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERH------------------ESRRIDNQLRGRSGRQGD 572 (853)
T ss_dssp HHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCC------------------SSHHHHHHHHTTSSGGGC
T ss_pred hHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCC------------------CCHHHHHhhccccccCCC
Confidence 4 799996543 35667789999999987
Q ss_pred CcEEEEceehhh
Q 047202 312 PGICYSLYTRHR 323 (735)
Q Consensus 312 ~G~c~rL~t~~~ 323 (735)
||.+.-+.+.++
T Consensus 573 ~G~s~~fls~eD 584 (853)
T 2fsf_A 573 AGSSRFYLSMED 584 (853)
T ss_dssp CEEEEEEEETTS
T ss_pred CeeEEEEecccH
Confidence 599888777653
No 66
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.17 E-value=1.1e-10 Score=136.03 Aligned_cols=105 Identities=22% Similarity=0.200 Sum_probs=87.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccccccCCCCCCe---
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNIAETSITIDDV--- 267 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV--- 267 (735)
+.++|||+.+.+..+.+.+.|... ++....|||.....++..+.+.+.+| .|.||||+|.+|++|+.+
T Consensus 460 gqpvLVft~Sie~sE~Ls~~L~~~-------Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~ 530 (922)
T 1nkt_A 460 GQPVLIGTTSVERSEYLSRQFTKR-------RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNV 530 (922)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHT-------TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC-------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCH
Confidence 457999999999999999999875 46678899998877777777888777 699999999999999975
Q ss_pred -------------------------------------------------EEEEeCCcccceeccCCCCcccceeEeehHh
Q 047202 268 -------------------------------------------------VYVFDCGRHKENRYNSQKKLSSMVEDWISQA 298 (735)
Q Consensus 268 -------------------------------------------------~~VIDsG~~k~~~yd~~~~~~~l~~~~iSka 298 (735)
.|||++.++ -|+-
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~p------------------es~r 592 (922)
T 1nkt_A 531 DFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERH------------------ESRR 592 (922)
T ss_dssp HHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCC------------------SSHH
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCC------------------CCHH
Confidence 699985433 3566
Q ss_pred hHHHhcCcCCCCC-CcEEEEceehh
Q 047202 299 NARQRRGRAGRVK-PGICYSLYTRH 322 (735)
Q Consensus 299 sa~QR~GRAGR~~-~G~c~rL~t~~ 322 (735)
.+.||+||+||.| ||.+.-+.|.+
T Consensus 593 iy~qr~GRTGRqGdpG~s~fflSle 617 (922)
T 1nkt_A 593 IDNQLRGRSGRQGDPGESRFYLSLG 617 (922)
T ss_dssp HHHHHHHTSSGGGCCEEEEEEEETT
T ss_pred HHHHHhcccccCCCCeeEEEEechh
Confidence 7789999999987 59988777754
No 67
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.17 E-value=1.4e-10 Score=131.29 Aligned_cols=113 Identities=12% Similarity=0.116 Sum_probs=88.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCC-cc-EEEEeccccccCCCCCCe
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEK-IR-KVIIATNIAETSITIDDV 267 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g-~r-kVIlaTnIAEtsitIpdV 267 (735)
++..+|||......++.+.+.|.... +..+..+||+++.++|+++++.|..| .. .+++||.+++.|++++++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~ 413 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 413 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTC
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhC
Confidence 56789999999999999988887642 34577899999999999999988766 33 478999999999999999
Q ss_pred EEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC---cEEEEceehhhHhh
Q 047202 268 VYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP---GICYSLYTRHRYEK 326 (735)
Q Consensus 268 ~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~---G~c~rL~t~~~~~~ 326 (735)
.+||. ||+.. +.+.+.||.||++|.+. ..+|+|+++...+.
T Consensus 414 ~~vi~--------~d~~~----------~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee 457 (500)
T 1z63_A 414 NRVIH--------FDRWW----------NPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 457 (500)
T ss_dssp SEEEE--------SSCCS----------CC---CHHHHTTTTTTTTSCEEEEEEEETTSHHH
T ss_pred CEEEE--------eCCCC----------CcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHH
Confidence 99997 55433 34456699999999765 56799999876654
No 68
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.11 E-value=5.2e-11 Score=121.19 Aligned_cols=63 Identities=48% Similarity=1.005 Sum_probs=58.6
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHHHhhhCCCCeEee
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLFSRYFGDCPVITA 78 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f~~yF~~~pvi~i 78 (735)
.++++++|||||+|+|++++|+++..++.++..+ +++|+|+||||++.+.|++||+++|+++|
T Consensus 173 ~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-----~~~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 173 GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-----PEVRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-----TTSEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-----CCCeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 4899999999999999999999999999998766 57999999999999999999999999875
No 69
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.96 E-value=9.7e-10 Score=114.26 Aligned_cols=123 Identities=12% Similarity=0.128 Sum_probs=86.0
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCC-ccE-EEEec
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEK-IRK-VIIAT 255 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g-~rk-VIlaT 255 (735)
+.+++..+.. .+..+|||......++.+.+.|.... ++.+..+||+++.++|+++++.|..| ..+ +++||
T Consensus 101 L~~ll~~~~~--~~~kvlIFs~~~~~~~~l~~~L~~~~------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st 172 (271)
T 1z5z_A 101 TMEIIEEALD--EGDKIAIFTQFVDMGKIIRNIIEKEL------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 172 (271)
T ss_dssp HHHHHHHHHH--TTCCEEEEESCHHHHHHHHHHHHHHH------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHHHHHh--CCCeEEEEeccHHHHHHHHHHHHHhc------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeh
Confidence 3444444433 46789999999999999999887642 34577899999999999999888766 445 78899
Q ss_pred cccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC---cEEEEceehhhHhh
Q 047202 256 NIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP---GICYSLYTRHRYEK 326 (735)
Q Consensus 256 nIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~---G~c~rL~t~~~~~~ 326 (735)
+++.+|++++++.+||. ||+..+ .+...||.||++|.|. -.+|+++++...+.
T Consensus 173 ~~~g~Glnl~~a~~VI~--------~d~~wn----------p~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe 228 (271)
T 1z5z_A 173 KAGGFGINLTSANRVIH--------FDRWWN----------PAVEDQATDRVYRIGQTRNVIVHKLISVGTLEE 228 (271)
T ss_dssp CTTCCCCCCTTCSEEEE--------CSCCSC----------TTTC--------------CCEEEEEEETTSHHH
T ss_pred hhhcCCcCcccCCEEEE--------ECCCCC----------hhHHHHHHHhccccCCCCceEEEEEeeCCCHHH
Confidence 99999999999999998 665433 3445699999988754 56799999876654
No 70
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.93 E-value=8.7e-09 Score=125.03 Aligned_cols=104 Identities=8% Similarity=-0.005 Sum_probs=74.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhc-----cCCCCCcEE-EEecCC----------C----------CHH---------
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYR-----FGGPSSDWL-LALHSS----------V----------ASV--------- 235 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~-----~~~~~~~~i-~~LHs~----------l----------~~~--------- 235 (735)
++..+||+++...+..+.+.|..... .....++.+ ..+|+. + ++.
T Consensus 537 g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I 616 (1038)
T 2w00_A 537 GFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAI 616 (1038)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHH
Confidence 45899999999999999988875431 011122444 445542 2 221
Q ss_pred --------------------HHHHhcCCCCCCccEEEEeccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEee
Q 047202 236 --------------------DQKKVFLRPPEKIRKVIIATNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWI 295 (735)
Q Consensus 236 --------------------eq~~vf~~~~~g~rkVIlaTnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~i 295 (735)
+++.+.+.++.|..+|+|+|+++.||+++|.+. |+. +|. |.
T Consensus 617 ~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~-tly--------lDk----------pl 677 (1038)
T 2w00_A 617 REYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLN-TLF--------VDK----------NL 677 (1038)
T ss_dssp HHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEE-EEE--------EES----------CC
T ss_pred HHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCccccc-EEE--------Ecc----------CC
Confidence 356677778889999999999999999999995 443 442 33
Q ss_pred hHhhHHHhcCcCCCCCCc
Q 047202 296 SQANARQRRGRAGRVKPG 313 (735)
Q Consensus 296 Skasa~QR~GRAGR~~~G 313 (735)
+...+.||.||+||..+|
T Consensus 678 ~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 678 RYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp CHHHHHHHHHTTCCCCCT
T ss_pred CccceeehhhccCcCCCC
Confidence 456789999999998864
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.59 E-value=1.3e-07 Score=110.20 Aligned_cols=112 Identities=10% Similarity=0.092 Sum_probs=93.7
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCcc---EEEEeccccccCCCCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIR---KVIIATNIAETSITIDD 266 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~r---kVIlaTnIAEtsitIpd 266 (735)
.+..+|||......++.+.+.|... ++.+..+||+++.++|+++++.|..|.. .+++||.++++||++++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~-------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~ 487 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNR-------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIG 487 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHH-------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTT
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHC-------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccccc
Confidence 4678999999999999888888754 4668899999999999999887766543 58999999999999999
Q ss_pred eEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCCC---cEEEEceehhhHhh
Q 047202 267 VVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVKP---GICYSLYTRHRYEK 326 (735)
Q Consensus 267 V~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~~---G~c~rL~t~~~~~~ 326 (735)
+.+||. ||+ |-+.+...||.||++|.|. ..+|+++++...+.
T Consensus 488 a~~Vi~--------~d~----------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe 532 (644)
T 1z3i_X 488 ANRLVM--------FDP----------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEE 532 (644)
T ss_dssp EEEEEE--------CSC----------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHH
T ss_pred CCEEEE--------ECC----------CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHH
Confidence 999997 665 3367888999999999764 57999999876554
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.50 E-value=2.8e-07 Score=110.15 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=98.4
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCC---ccEEEEe
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEK---IRKVIIA 254 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g---~rkVIla 254 (735)
+..++..+.. .+..+|||..-...++.+.+.|... ++.+..+||+++..+|+++++.|..| ...+++|
T Consensus 561 L~~lL~~~~~--~g~kvLIFsq~~~~ld~L~~~L~~~-------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlS 631 (800)
T 3mwy_W 561 LDQLLTRLKK--DGHRVLIFSQMVRMLDILGDYLSIK-------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLS 631 (800)
T ss_dssp HHHHHHHHTT--TTCCEEEEESCHHHHHHHHHHHHHH-------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEE
T ss_pred HHHHHHHHhh--CCCeEEEEechHHHHHHHHHHHHhC-------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEe
Confidence 3444444432 4568999999999999888888754 46688999999999999999988764 3469999
Q ss_pred ccccccCCCCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcCCCCC---CcEEEEceehhhHhhh
Q 047202 255 TNIAETSITIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRAGRVK---PGICYSLYTRHRYEKL 327 (735)
Q Consensus 255 TnIAEtsitIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRAGR~~---~G~c~rL~t~~~~~~~ 327 (735)
|.+++.||+++.+.+||. ||+.- +.+...||.|||+|.| +..+|+|+++...+..
T Consensus 632 t~agg~GlNL~~a~~VI~--------~D~~w----------np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~ 689 (800)
T 3mwy_W 632 TRAGGLGINLMTADTVVI--------FDSDW----------NPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEE 689 (800)
T ss_dssp HHHHTTTCCCTTCCEEEE--------SSCCS----------CSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHH
T ss_pred cccccCCCCccccceEEE--------ecCCC----------ChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHH
Confidence 999999999999999997 66532 4577889999999965 5789999998877653
No 73
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=97.20 E-value=0.00021 Score=71.12 Aligned_cols=70 Identities=19% Similarity=0.282 Sum_probs=39.6
Q ss_pred CCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH---HHHhhhCCCCeEeeCCceecc
Q 047202 10 KNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN---LFSRYFGDCPVITAEGRTHPV 85 (735)
Q Consensus 10 ~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~---~f~~yF~~~pvi~i~gr~~pV 85 (735)
..+.++++||+||+|. -.+.++ ...++.++... .++.++++||||+..+ .+..|++++..|.+++..+++
T Consensus 151 ~~~~~~~~iViDEah~-~~~~~~-~~~l~~i~~~~----~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~~~~~ 223 (224)
T 1qde_A 151 FRTDKIKMFILDEADE-MLSSGF-KEQIYQIFTLL----PPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTL 223 (224)
T ss_dssp SCCTTCCEEEEETHHH-HHHTTC-HHHHHHHHHHS----CTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC--------
T ss_pred cchhhCcEEEEcChhH-Hhhhhh-HHHHHHHHHhC----CccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCCccCC
Confidence 3578899999999994 111111 12233344332 2578999999999663 345677766667777665543
No 74
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.15 E-value=0.00021 Score=81.40 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=67.4
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEE--ec
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVII--AT 255 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIl--aT 255 (735)
+.+.+..+... .+|.+|||+|++..++.+.+.|.. .. +..++.- .++.++.+.+..|. .|++ +|
T Consensus 372 ~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~---------~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~ 437 (540)
T 2vl7_A 372 YSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG---------IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMR 437 (540)
T ss_dssp HHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT---------SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC-
T ss_pred HHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc---------Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEec
Confidence 44455555443 578999999999999998876642 11 2345543 23344444444442 5766 89
Q ss_pred cccccCCCCCC----eEEEEeCCcccceeccCCCC--cc--------cceeE--eehHhhHHHhcCcCCCCCC--cEEEE
Q 047202 256 NIAETSITIDD----VVYVFDCGRHKENRYNSQKK--LS--------SMVED--WISQANARQRRGRAGRVKP--GICYS 317 (735)
Q Consensus 256 nIAEtsitIpd----V~~VIDsG~~k~~~yd~~~~--~~--------~l~~~--~iSkasa~QR~GRAGR~~~--G~c~r 317 (735)
..+..||++|| ++.||-.|++-...-||... +. ..... +..--...|-.||+-|... |..+-
T Consensus 438 ~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 438 AKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp --------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred CceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 99999999998 99999999986544333210 00 00001 1113457899999999754 76554
Q ss_pred c
Q 047202 318 L 318 (735)
Q Consensus 318 L 318 (735)
+
T Consensus 518 l 518 (540)
T 2vl7_A 518 C 518 (540)
T ss_dssp E
T ss_pred E
Confidence 3
No 75
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.84 E-value=0.00081 Score=65.73 Aligned_cols=62 Identities=27% Similarity=0.374 Sum_probs=37.3
Q ss_pred CCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCCh--HHHH-hhhCCCCeEe
Q 047202 10 KNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDS--NLFS-RYFGDCPVIT 77 (735)
Q Consensus 10 ~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~--~~f~-~yF~~~pvi~ 77 (735)
..+.++++||+||+|.- .+.+ ....+..++... .++.++|+||||++. +.+. .|++++.++.
T Consensus 140 ~~~~~~~~iViDEah~~-~~~~-~~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 140 LDLSRVEVAVLDEADEM-LSMG-FEEEVEALLSAT----PPSRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp SCCTTCSEEEEESHHHH-HHTT-CHHHHHHHHHTS----CTTSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred cchhhceEEEEEChhHh-hccc-hHHHHHHHHHhC----CccCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 35789999999999941 1111 122233444322 257899999999964 3444 5555543443
No 76
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=96.79 E-value=0.00084 Score=67.72 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=39.7
Q ss_pred CCCCCccEEEEcccccCCcc--HHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH--HHH-hhhCCCCeEeeCCc
Q 047202 10 KNLTGVTHVIVDEVHERSLL--GDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN--LFS-RYFGDCPVITAEGR 81 (735)
Q Consensus 10 ~~L~~~s~vIiDEvHER~~~--tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~--~f~-~yF~~~pvi~i~gr 81 (735)
-.+.++++|||||||+-.-. .++.- .+..++... ..++.++++||||++.+ .+. .|++++..+.+.++
T Consensus 171 ~~~~~~~~lViDEah~~~~~~~~~~~~-~~~~i~~~~---~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 171 IDLASVEWLVVDESDKLFEDGKTGFRD-QLASIFLAC---TSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp CCCTTCCEEEESSHHHHHHHC--CHHH-HHHHHHHHC---CCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred cccccCcEEEEeChHHhcccccccHHH-HHHHHHHhc---CCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 35889999999999962110 12222 222333222 12578999999999543 454 55665555666543
No 77
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.79 E-value=0.00069 Score=67.93 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=40.4
Q ss_pred CCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH--HHH-hhhCCCCeEeeCCc
Q 047202 10 KNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN--LFS-RYFGDCPVITAEGR 81 (735)
Q Consensus 10 ~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~--~f~-~yF~~~pvi~i~gr 81 (735)
..+.++++|||||+|. -.+.++. ..++.++..- .++.++++||||++.+ .+. .|+.++..|.+.++
T Consensus 167 ~~~~~~~~lViDEah~-~~~~~~~-~~~~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~~ 235 (236)
T 2pl3_A 167 FHATDLQMLVLDEADR-ILDMGFA-DTMNAVIENL----PKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHEK 235 (236)
T ss_dssp CCCTTCCEEEETTHHH-HHHTTTH-HHHHHHHHTS----CTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC-
T ss_pred cccccccEEEEeChHH-HhcCCcH-HHHHHHHHhC----CCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 4578999999999993 2222221 2233344322 2468999999999654 344 56666656666543
No 78
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.72 E-value=0.00076 Score=67.24 Aligned_cols=56 Identities=25% Similarity=0.408 Sum_probs=34.6
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH--HHH-hhhCC
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN--LFS-RYFGD 72 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~--~f~-~yF~~ 72 (735)
.+.++++|||||||. -.+.++ ...++.++... .++.++++||||++.+ .+. .|+.+
T Consensus 164 ~~~~~~~lViDEah~-~~~~~~-~~~~~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~l~~ 222 (228)
T 3iuy_A 164 NLRSITYLVIDEADK-MLDMEF-EPQIRKILLDV----RPDRQTVMTSATWPDTVRQLALSYLKD 222 (228)
T ss_dssp CCTTCCEEEECCHHH-HHHTTC-HHHHHHHHHHS----CSSCEEEEEESCCCHHHHHHHHTTCSS
T ss_pred CcccceEEEEECHHH-Hhccch-HHHHHHHHHhC----CcCCeEEEEEeeCCHHHHHHHHHHCCC
Confidence 488999999999994 111111 11233333332 2578999999999653 444 55554
No 79
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.70 E-value=0.00072 Score=68.73 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=38.7
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH--HH-HhhhCCCCeEee
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN--LF-SRYFGDCPVITA 78 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~--~f-~~yF~~~pvi~i 78 (735)
.+.++++||+||+| |-.+.++.- .++.++... .++.++++||||++.+ .+ ..|+.++..|.+
T Consensus 183 ~l~~~~~lViDEah-~l~~~~~~~-~l~~i~~~~----~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 183 NLRALKYLVMDEAD-RILNMDFET-EVDKILKVI----PRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp CCTTCCEEEECSHH-HHHHTTCHH-HHHHHHHSS----CSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred CccccCEEEEcChh-hhhccChHH-HHHHHHHhC----CCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 58899999999999 333333322 233344322 2468999999999654 34 456665444443
No 80
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.64 E-value=0.00055 Score=68.51 Aligned_cols=60 Identities=15% Similarity=0.240 Sum_probs=37.8
Q ss_pred CCCCccEEEEccccc---CCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH---HHHhhhCCCCeEee
Q 047202 11 NLTGVTHVIVDEVHE---RSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN---LFSRYFGDCPVITA 78 (735)
Q Consensus 11 ~L~~~s~vIiDEvHE---R~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~---~f~~yF~~~pvi~i 78 (735)
.+.++++|||||+|. .+...+ .++.++...+ ++.++++||||++.+ .+.+||+++..|.+
T Consensus 163 ~~~~~~~lViDEah~~~~~~~~~~----~~~~i~~~~~----~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 163 NPGSIRLFILDEADKLLEEGSFQE----QINWIYSSLP----ASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp CGGGCCEEEESSHHHHHSTTSSHH----HHHHHHHHSC----SSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred ccccCCEEEeCCchHhhcCcchHH----HHHHHHHhCC----CCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 468899999999994 221222 2333333321 468999999999654 34567776544443
No 81
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.62 E-value=0.0012 Score=64.44 Aligned_cols=56 Identities=21% Similarity=0.386 Sum_probs=35.3
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH--HH-HhhhCC
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN--LF-SRYFGD 72 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~--~f-~~yF~~ 72 (735)
.+.++++||+||+|.- .+.++ ...++.++...+ ++.++++||||+..+ .+ ..|+++
T Consensus 143 ~~~~~~~lViDEah~~-~~~~~-~~~l~~i~~~~~----~~~~~l~~SAT~~~~~~~~~~~~l~~ 201 (206)
T 1vec_A 143 KVDHVQMIVLDEADKL-LSQDF-VQIMEDIILTLP----KNRQILLYSATFPLSVQKFMNSHLEK 201 (206)
T ss_dssp CCTTCCEEEEETHHHH-TSTTT-HHHHHHHHHHSC----TTCEEEEEESCCCHHHHHHHHHHCSS
T ss_pred CcccCCEEEEEChHHh-HhhCc-HHHHHHHHHhCC----ccceEEEEEeeCCHHHHHHHHHHcCC
Confidence 5789999999999951 11122 233444443332 468999999999554 34 455553
No 82
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.36 E-value=0.0023 Score=64.23 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=35.9
Q ss_pred CCCCccEEEEccccc---CCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH--HH-HhhhCCCCeEee
Q 047202 11 NLTGVTHVIVDEVHE---RSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN--LF-SRYFGDCPVITA 78 (735)
Q Consensus 11 ~L~~~s~vIiDEvHE---R~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~--~f-~~yF~~~pvi~i 78 (735)
.+.++++||+||||. .+. .+. +..++... .++.++|+||||++.+ .+ ..|+.++..|.+
T Consensus 170 ~~~~~~~lViDEah~~~~~~~-~~~----l~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 170 SPKWIKMFVLDEADEMLSRGF-KDQ----IYEIFQKL----NTSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp CSTTCCEEEEESHHHHHHTTC-HHH----HHHHHHHS----CTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred CcccCcEEEECCchHhhccCc-HHH----HHHHHHhC----CCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 478899999999994 221 122 22333322 1568999999999653 33 456665434433
No 83
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.35 E-value=0.0023 Score=63.36 Aligned_cols=62 Identities=16% Similarity=0.320 Sum_probs=37.5
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH--H-HHhhhCCCCeEee
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN--L-FSRYFGDCPVITA 78 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~--~-f~~yF~~~pvi~i 78 (735)
.+.++++|||||+|.- .+..+ ...++.++... .++.++++||||++.+ . +.+|+.++..+.+
T Consensus 147 ~~~~~~~lViDEah~~-~~~~~-~~~l~~i~~~~----~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 147 DVHTAHILVVDEADLM-LDMGF-ITDVDQIAARM----PKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp CGGGCCEEEECSHHHH-HHTTC-HHHHHHHHHTS----CTTCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred CcCcceEEEEcCchHH-hhhCh-HHHHHHHHHhC----CcccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 4788999999999951 11111 22344444332 2468999999999554 3 3566665433433
No 84
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.33 E-value=0.0026 Score=62.86 Aligned_cols=61 Identities=21% Similarity=0.299 Sum_probs=38.1
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCCh--HHH-HhhhCCCCeE
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDS--NLF-SRYFGDCPVI 76 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~--~~f-~~yF~~~pvi 76 (735)
.+.++++||+||+|.-.-+.++ ...++.++... .++.++++||||++. +.+ ..|+.++..|
T Consensus 155 ~~~~~~~lViDEah~~~~~~~~-~~~~~~i~~~~----~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 218 (220)
T 1t6n_A 155 NLKHIKHFILDECDKMLEQLDM-RRDVQEIFRMT----PHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218 (220)
T ss_dssp CCTTCCEEEEESHHHHHSSHHH-HHHHHHHHHTS----CSSSEEEEEESCCCTTTHHHHHTTCSSCEEE
T ss_pred CcccCCEEEEcCHHHHhcccCc-HHHHHHHHHhC----CCcCeEEEEEeecCHHHHHHHHHHcCCCeEE
Confidence 5789999999999953111222 22344444332 247899999999944 444 4567654344
No 85
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.32 E-value=0.0025 Score=64.13 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=38.3
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH--HHH-hhhCCCCeEeeC
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN--LFS-RYFGDCPVITAE 79 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~--~f~-~yF~~~pvi~i~ 79 (735)
.+.++++|||||+|. -.+..+ ...++.++... .++.++++||||++.+ .+. .|+.++-.|.+.
T Consensus 173 ~~~~~~~lViDEah~-l~~~~~-~~~~~~i~~~~----~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 173 NLRRTTYLVLDEADR-MLDMGF-EPQIRKIVDQI----RPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp CCTTCCEEEETTHHH-HHHTTC-HHHHHHHHTTS----CSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred CcccccEEEEeCHHH-HhhhCc-HHHHHHHHHhC----CccceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 588999999999994 111111 12233344322 2578999999999654 454 555554445553
No 86
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.29 E-value=0.014 Score=68.63 Aligned_cols=22 Identities=18% Similarity=0.086 Sum_probs=19.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHH
Q 047202 191 EGAILVFLPGVAEIHILLDRLA 212 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~ 212 (735)
+-+|||+..+.++-+.+.+.|.
T Consensus 443 GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 443 GQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp TCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHh
Confidence 4589999999999999888887
No 87
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.03 E-value=0.004 Score=63.61 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=35.7
Q ss_pred CCCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH--HHHh-hhCCCC
Q 047202 10 KNLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN--LFSR-YFGDCP 74 (735)
Q Consensus 10 ~~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~--~f~~-yF~~~p 74 (735)
-.++++++|||||+|. -.+..+ ...++.++.... ++.++|+||||++.+ .|.+ ++...|
T Consensus 197 ~~~~~l~~lViDEah~-l~~~~~-~~~l~~i~~~~~----~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 197 FMYKNLQCLVIDEADR-ILDVGF-EEELKQIIKLLP----TRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp CCCTTCCEEEECSHHH-HHHTTC-HHHHHHHHHHSC----SSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred cccccCCEEEEcChHH-HhhhhH-HHHHHHHHHhCC----CCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 3688999999999994 111111 122333443322 468999999999554 4554 444433
No 88
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.01 E-value=0.0022 Score=67.04 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=37.4
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH--HHH-hhhCCCCeEee
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN--LFS-RYFGDCPVITA 78 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~--~f~-~yF~~~pvi~i 78 (735)
.++++++|||||+|.- ++.......+..++... .++.++|+||||+..+ .|+ .|+.++.+|.+
T Consensus 232 ~l~~l~~lVlDEad~l-~~~~~~~~~~~~i~~~~----~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~ 297 (300)
T 3fmo_B 232 DPKKIKVFVLDEADVM-IATQGHQDQSIRIQRML----PRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297 (300)
T ss_dssp CGGGCSEEEETTHHHH-HHSTTHHHHHHHHHTTS----CTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEE
T ss_pred ChhhceEEEEeCHHHH-hhccCcHHHHHHHHHhC----CCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEe
Confidence 4789999999999941 11011122233333221 2578999999999654 455 45555444554
No 89
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.42 E-value=0.015 Score=58.63 Aligned_cols=66 Identities=14% Similarity=0.204 Sum_probs=36.9
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChH--HHH-hhhCCCCeEee
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSN--LFS-RYFGDCPVITA 78 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~--~f~-~yF~~~pvi~i 78 (735)
.+.++++||+||+|.= .+.. .-..++.++.........+.++++||||+..+ .+. .|+.++..|.+
T Consensus 171 ~~~~~~~lViDEah~~-~~~~-~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 171 SLEFCKYIVLDEADRM-LDMG-FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp CCTTCCEEEEETHHHH-HHTT-CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred ChhhCCEEEEeCHHHH-HhCc-hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 5789999999999951 0000 11223444432110001267999999999654 444 55554434444
No 90
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.94 E-value=0.0073 Score=58.99 Aligned_cols=51 Identities=18% Similarity=0.335 Sum_probs=27.8
Q ss_pred CCCCCccEEEEcccccCC---ccHHHHHHHHHHHHHhh-----ccCCCCCcEEEEecCC
Q 047202 10 KNLTGVTHVIVDEVHERS---LLGDFLLIVLKDLLEKQ-----SAHDTPKLKVILMSAT 60 (735)
Q Consensus 10 ~~L~~~s~vIiDEvHER~---~~tD~LL~~lk~ll~~r-----~~~~~~~lklIlmSAT 60 (735)
..+.++++|||||+|.-. ...+++-.+++..+... .....++.++|+||||
T Consensus 158 ~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 158 VQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp CCGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred cchhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 457899999999999642 22333323333222111 0112257899999999
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=92.83 E-value=0.033 Score=57.30 Aligned_cols=41 Identities=12% Similarity=0.193 Sum_probs=28.5
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV 61 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~ 61 (735)
.+.++++|||||+|.-. .+ .++.++..- .+..++++||||+
T Consensus 222 ~~~~~~~vIiDEaH~~~--~~----~~~~il~~~----~~~~~~l~lSATp 262 (282)
T 1rif_A 222 WFSQFGMMMNDECHLAT--GK----SISSIISGL----NNCMFKFGLSGSL 262 (282)
T ss_dssp GGGGEEEEEEETGGGCC--HH----HHHHHTTTC----TTCCEEEEECSSC
T ss_pred HHhhCCEEEEECCccCC--cc----cHHHHHHHh----hcCCeEEEEeCCC
Confidence 47889999999999643 22 233343321 1468999999999
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=87.00 E-value=8.7 Score=43.12 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=77.1
Q ss_pred HHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEec--
Q 047202 178 LEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIAT-- 255 (735)
Q Consensus 178 i~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaT-- 255 (735)
+.+.+..+... .+|.+|||+|++..++.+.+.+ +..++.=..+++.++..+.|.. .+ .-|+++|
T Consensus 381 l~~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~~----------~~~v~~q~~~~~~~~~~~~~~~--~~-~~vl~~v~g 446 (551)
T 3crv_A 381 YADYLLKIYFQ-AKANVLVVFPSYEIMDRVMSRI----------SLPKYVESEDSSVEDLYSAISA--NN-KVLIGSVGK 446 (551)
T ss_dssp HHHHHHHHHHH-CSSEEEEEESCHHHHHHHHTTC----------CSSEEECCSSCCHHHHHHHTTS--SS-SCEEEEESS
T ss_pred HHHHHHHHHHh-CCCCEEEEecCHHHHHHHHHhc----------CCcEEEcCCCCCHHHHHHHHHh--cC-CeEEEEEec
Confidence 34444444432 5789999999999998887521 2224433345677777777752 22 3799998
Q ss_pred cccccCCCCC---C--eEEEEeCCcccceeccCCC-----------Ccccc---eeEeehHhhHHHhcCcCCCCCC--cE
Q 047202 256 NIAETSITID---D--VVYVFDCGRHKENRYNSQK-----------KLSSM---VEDWISQANARQRRGRAGRVKP--GI 314 (735)
Q Consensus 256 nIAEtsitIp---d--V~~VIDsG~~k~~~yd~~~-----------~~~~l---~~~~iSkasa~QR~GRAGR~~~--G~ 314 (735)
...--||++| | .+.||=.|++-... ||.. +.... -..+ .--..+|=.||+=|... |.
T Consensus 447 g~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~ 524 (551)
T 3crv_A 447 GKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCN 524 (551)
T ss_dssp CCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEE
T ss_pred ceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEE
Confidence 5677799999 3 77777778765444 4321 11000 1112 34457789999988765 65
Q ss_pred EEEc
Q 047202 315 CYSL 318 (735)
Q Consensus 315 c~rL 318 (735)
.+-|
T Consensus 525 v~ll 528 (551)
T 3crv_A 525 VWLL 528 (551)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5543
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=85.10 E-value=0.99 Score=51.82 Aligned_cols=125 Identities=13% Similarity=0.099 Sum_probs=68.8
Q ss_pred HHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEec--cc
Q 047202 180 DLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIAT--NI 257 (735)
Q Consensus 180 ~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaT--nI 257 (735)
+.+..+.+. .+|.+|||+|++..++.+.+.|. .. ... +--+++..++..+++.+. +..-|+++| ..
T Consensus 438 ~~i~~l~~~-~~g~~lvlF~Sy~~l~~v~~~l~-~~------~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gs 505 (620)
T 4a15_A 438 TVIEDIILK-VKKNTIVYFPSYSLMDRVENRVS-FE------HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGR 505 (620)
T ss_dssp HHHHHHHHH-HCSCEEEEESCHHHHHHHTSSCC-SC------CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSC
T ss_pred HHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHHH-hc------chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCc
Confidence 444444432 47789999999999988877664 11 111 444555556666766666 777899997 47
Q ss_pred cccCCCCCC--eEEEEeCCcccceeccCCC-----------C--cccceeEeehHhhHHHhcCcCCCCCC--cEEEEc
Q 047202 258 AETSITIDD--VVYVFDCGRHKENRYNSQK-----------K--LSSMVEDWISQANARQRRGRAGRVKP--GICYSL 318 (735)
Q Consensus 258 AEtsitIpd--V~~VIDsG~~k~~~yd~~~-----------~--~~~l~~~~iSkasa~QR~GRAGR~~~--G~c~rL 318 (735)
.--||++|| .+.||=.|++-... ||.. + ...-...+ .--...|=.||+=|... |..+-+
T Consensus 506 f~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 506 LSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp C--------CCCCEEEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred eeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 778999996 45666677764321 2110 0 00000111 23356899999988655 765544
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=76.81 E-value=7.2 Score=40.59 Aligned_cols=122 Identities=12% Similarity=0.076 Sum_probs=66.9
Q ss_pred hHHHHHHHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEe
Q 047202 175 YDLLEDLVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIA 254 (735)
Q Consensus 175 ~~li~~ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIla 254 (735)
+.++..++..+.+ .+..||||.......+.+.+.+... ++....+-|+....+++ . ......|.|.
T Consensus 111 f~~L~~LL~~l~~--~~~kVLIfsq~t~~LDilE~~l~~~-------~~~y~RlDG~~~~~~~k-~----~~~~~~i~Ll 176 (328)
T 3hgt_A 111 FSVLRDLINLVQE--YETETAIVCRPGRTMDLLEALLLGN-------KVHIKRYDGHSIKSAAA-A----NDFSCTVHLF 176 (328)
T ss_dssp HHHHHHHHHHHTT--SCEEEEEEECSTHHHHHHHHHHTTS-------SCEEEESSSCCC------------CCSEEEEEE
T ss_pred HHHHHHHHHHHHh--CCCEEEEEECChhHHHHHHHHHhcC-------CCceEeCCCCchhhhhh-c----ccCCceEEEE
Confidence 3455566666644 4568999999888777766666432 57788888885443332 2 2345677777
Q ss_pred ccccccCC-------CCCCeEEEEeCCcccceeccCCCCcccceeEeehHhhHHHhcCcC--CCCCCcEEEEceehhhHh
Q 047202 255 TNIAETSI-------TIDDVVYVFDCGRHKENRYNSQKKLSSMVEDWISQANARQRRGRA--GRVKPGICYSLYTRHRYE 325 (735)
Q Consensus 255 TnIAEtsi-------tIpdV~~VIDsG~~k~~~yd~~~~~~~l~~~~iSkasa~QR~GRA--GR~~~G~c~rL~t~~~~~ 325 (735)
|.-+.-|+ +=.|+.+..|+. |||... --+|..|+-|. |...+=..|||.+....+
T Consensus 177 tsag~~gin~~~~nl~~aD~VI~~Dsd------wNp~~d----------~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 177 SSEGINFTKYPIKSKARFDMLICLDTT------VDTSQK----------DIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp ESSCCCTTTSCCCCCSCCSEEEECSTT------CCTTSH----------HHHHHHCCC---------CCEEEEEETTSHH
T ss_pred ECCCCCCcCcccccCCCCCEEEEECCC------CCCCCh----------HHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 76444444 334555555654 444332 01233355555 345566899999987665
Q ss_pred h
Q 047202 326 K 326 (735)
Q Consensus 326 ~ 326 (735)
.
T Consensus 241 h 241 (328)
T 3hgt_A 241 H 241 (328)
T ss_dssp H
T ss_pred H
Confidence 5
No 95
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=62.06 E-value=8.2 Score=44.28 Aligned_cols=43 Identities=28% Similarity=0.256 Sum_probs=26.2
Q ss_pred CCccEEEEccccc-CCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHH
Q 047202 13 TGVTHVIVDEVHE-RSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNL 65 (735)
Q Consensus 13 ~~~s~vIiDEvHE-R~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~ 65 (735)
.+++.||+||+|. ++..+-... .++.+ +.-+.+++|||.--+.
T Consensus 191 ~~~~~vI~DEaH~ikn~~~~~~~-al~~l---------~~~~rl~LTgTPiqN~ 234 (644)
T 1z3i_X 191 GKVGLVICDEGHRLKNSDNQTYL-ALNSM---------NAQRRVLISGTPIQND 234 (644)
T ss_dssp SCCCEEEETTGGGCCTTCHHHHH-HHHHH---------CCSEEEEECSSCSGGG
T ss_pred CCccEEEEECceecCChhhHHHH-HHHhc---------ccCcEEEEecCcccCC
Confidence 5788999999996 333332221 22222 1247899999984333
No 96
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=57.74 E-value=34 Score=32.58 Aligned_cols=76 Identities=8% Similarity=0.128 Sum_probs=52.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc-----c-ccCCCC
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI-----A-ETSITI 264 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI-----A-EtsitI 264 (735)
...+||.+|+.+=+.+..+.+...... .++..+..+||+.+..++.+.+.. +...|+++|.= . ...+..
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~~~~v~~~~g~~~~~~~~~~~~~---~~~~i~v~T~~~l~~~~~~~~~~~ 156 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKY--MPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTPGRILALARNKSLNL 156 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTT--STTCCEEEESCCSCHHHHHHHHHH---SCCSEEEECHHHHHHHHHTTSSCC
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhh--CCCceEEEEeCCCChHHHHHHHhc---CCCCEEEeCHHHHHHHHHhCCCCc
Confidence 348999999999888888777654211 124678899999998877665542 23479999952 1 234567
Q ss_pred CCeEEEE
Q 047202 265 DDVVYVF 271 (735)
Q Consensus 265 pdV~~VI 271 (735)
.++.+||
T Consensus 157 ~~~~~lV 163 (220)
T 1t6n_A 157 KHIKHFI 163 (220)
T ss_dssp TTCCEEE
T ss_pred ccCCEEE
Confidence 7777766
No 97
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=57.70 E-value=27 Score=33.37 Aligned_cols=82 Identities=10% Similarity=0.053 Sum_probs=47.5
Q ss_pred HHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc----
Q 047202 182 VCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI---- 257 (735)
Q Consensus 182 l~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI---- 257 (735)
+..+......+.+||.+|..+-+.+..+.+..... ..+..+..+||+.+..++...+.. ..|+++|.-
T Consensus 73 l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~-----~~iiv~Tp~~l~~ 144 (224)
T 1qde_A 73 LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAF---HMDIKVHACIGGTSFVEDAEGLRD-----AQIVVGTPGRVFD 144 (224)
T ss_dssp HHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT---TSCCCEEEECC----------CTT-----CSEEEECHHHHHH
T ss_pred HHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhc---ccCceEEEEeCCcchHHHHhcCCC-----CCEEEECHHHHHH
Confidence 34443334556899999999988888887765421 224668899999887776655432 469999962
Q ss_pred --cccCCCCCCeEEEE
Q 047202 258 --AETSITIDDVVYVF 271 (735)
Q Consensus 258 --AEtsitIpdV~~VI 271 (735)
....+...++.+||
T Consensus 145 ~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 145 NIQRRRFRTDKIKMFI 160 (224)
T ss_dssp HHHTTSSCCTTCCEEE
T ss_pred HHHhCCcchhhCcEEE
Confidence 23345566776665
No 98
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=55.30 E-value=56 Score=30.50 Aligned_cols=76 Identities=14% Similarity=0.085 Sum_probs=51.3
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc------ccccCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN------IAETSIT 263 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn------IAEtsit 263 (735)
....+||.+|..+-+.+..+.+...... .++..+..++|+.+..++...+.. ...|+++|+ +....+.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~ 143 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKH--MGGAKVMATTGGTNLRDDIMRLDD----TVHVVIATPGRILDLIKKGVAK 143 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTT--SSSCCEEEECSSSCHHHHHHHTTS----CCSEEEECHHHHHHHHHTTCSC
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhh--cCCceEEEEeCCccHHHHHHhcCC----CCCEEEeCHHHHHHHHHcCCcC
Confidence 4457999999999888888877654321 124568889999988776655432 346999997 1222345
Q ss_pred CCCeEEEE
Q 047202 264 IDDVVYVF 271 (735)
Q Consensus 264 IpdV~~VI 271 (735)
..++.+||
T Consensus 144 ~~~~~~lV 151 (206)
T 1vec_A 144 VDHVQMIV 151 (206)
T ss_dssp CTTCCEEE
T ss_pred cccCCEEE
Confidence 66776665
No 99
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=53.81 E-value=15 Score=43.09 Aligned_cols=78 Identities=12% Similarity=0.084 Sum_probs=60.0
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc-cccCCCCCCeEE
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI-AETSITIDDVVY 269 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI-AEtsitIpdV~~ 269 (735)
++.++|..|+.+=+.+..+.+..... ..++.+..+||+++..++..++.....|...||++|.- ....+...++.+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~---~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~l 493 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFS---KFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGL 493 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHT---CSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhh---hcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCce
Confidence 46899999999888888777765431 12467999999999999888887777788899999972 233467788877
Q ss_pred EE
Q 047202 270 VF 271 (735)
Q Consensus 270 VI 271 (735)
||
T Consensus 494 VV 495 (780)
T 1gm5_A 494 VI 495 (780)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 100
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=52.96 E-value=48 Score=32.15 Aligned_cols=75 Identities=16% Similarity=0.082 Sum_probs=52.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-----ccc-cCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-----IAE-TSIT 263 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-----IAE-tsit 263 (735)
..+.+||.+|+++=+.++.+.+...... .++.+..++|+.+..++...+... ..|+|+|+ ... ..+.
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~----~~I~v~Tp~~l~~~l~~~~~~ 173 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRA---CRLKSTCIYGGAPKGPQIRDLERG----VEICIATPGRLIDFLECGKTN 173 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEECTTSCHHHHHHHHHHC----CSEEEECHHHHHHHHHHTSCC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhh---cCceEEEEECCCChHHHHHHhcCC----CCEEEECHHHHHHHHHcCCCC
Confidence 3557999999999888887776553221 146688999999998877666432 36999995 222 3456
Q ss_pred CCCeEEEE
Q 047202 264 IDDVVYVF 271 (735)
Q Consensus 264 IpdV~~VI 271 (735)
+.++.+||
T Consensus 174 ~~~~~~lV 181 (242)
T 3fe2_A 174 LRRTTYLV 181 (242)
T ss_dssp CTTCCEEE
T ss_pred cccccEEE
Confidence 77887766
No 101
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=50.60 E-value=57 Score=31.92 Aligned_cols=84 Identities=17% Similarity=0.127 Sum_probs=55.7
Q ss_pred HHHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc----
Q 047202 181 LVCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN---- 256 (735)
Q Consensus 181 ll~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn---- 256 (735)
++..+......+.+||.+|+++=+.++.+.+...... .++.+..++|+.+..++...... ...|+++|+
T Consensus 101 il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~ 173 (249)
T 3ber_A 101 ILNALLETPQRLFALVLTPTRELAFQISEQFEALGSS---IGVQSAVIVGGIDSMSQSLALAK----KPHIIIATPGRLI 173 (249)
T ss_dssp HHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGG---GTCCEEEECTTSCHHHHHHHHHT----CCSEEEECHHHHH
T ss_pred HHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhcc---CCeeEEEEECCCChHHHHHHhcC----CCCEEEECHHHHH
Confidence 3444444444567999999999888888777553211 13568889999988777665532 347999995
Q ss_pred -ccc--cCCCCCCeEEEE
Q 047202 257 -IAE--TSITIDDVVYVF 271 (735)
Q Consensus 257 -IAE--tsitIpdV~~VI 271 (735)
..+ ..+...++.+||
T Consensus 174 ~~l~~~~~~~l~~~~~lV 191 (249)
T 3ber_A 174 DHLENTKGFNLRALKYLV 191 (249)
T ss_dssp HHHHHSTTCCCTTCCEEE
T ss_pred HHHHcCCCcCccccCEEE
Confidence 222 345677787666
No 102
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=50.16 E-value=16 Score=38.77 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=48.5
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN 256 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn 256 (735)
..++.+||.+|..+=+.+..+.+.... . .++.+..+||+.+..++...+.....|...|+++|+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~---~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp 125 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLA---D-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 125 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHC---C-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHc---c-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECH
Confidence 356789999999999999888887632 1 356799999999996665554444455568999997
No 103
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=45.47 E-value=39 Score=41.50 Aligned_cols=78 Identities=10% Similarity=0.195 Sum_probs=60.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-ccccCCCCCCeEE
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-IAETSITIDDVVY 269 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-IAEtsitIpdV~~ 269 (735)
++.+||.+|+..=+.+..+.+..... ..+..+..+++..+..++..+......|...||++|. .....+...++.+
T Consensus 652 g~~vlvlvPt~~La~Q~~~~~~~~~~---~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~l 728 (1151)
T 2eyq_A 652 HKQVAVLVPTTLLAQQHYDNFRDRFA---NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 728 (1151)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHHST---TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEE
T ss_pred CCeEEEEechHHHHHHHHHHHHHHhh---cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccce
Confidence 45789999999888888887765431 1245688999999999988888777778889999994 4445578889988
Q ss_pred EE
Q 047202 270 VF 271 (735)
Q Consensus 270 VI 271 (735)
||
T Consensus 729 vI 730 (1151)
T 2eyq_A 729 LI 730 (1151)
T ss_dssp EE
T ss_pred EE
Confidence 77
No 104
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=45.15 E-value=67 Score=30.79 Aligned_cols=68 Identities=7% Similarity=-0.084 Sum_probs=48.0
Q ss_pred HHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc
Q 047202 182 VCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN 256 (735)
Q Consensus 182 l~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn 256 (735)
+..+......+.+||.+|+.+=+.+..+.+..... ...++.+..++|+.+..++...+. ...|+++|.
T Consensus 83 l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~-----~~~Iiv~Tp 150 (230)
T 2oxc_A 83 LDSLVLENLSTQILILAPTREIAVQIHSVITAIGI--KMEGLECHVFIGGTPLSQDKTRLK-----KCHIAVGSP 150 (230)
T ss_dssp HHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTT--TSTTCCEEEECTTSCHHHHHHHTT-----SCSEEEECH
T ss_pred HHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhc--ccCCceEEEEeCCCCHHHHHHhcc-----CCCEEEECH
Confidence 33433333456899999999998888887765421 112467889999999888777664 247999987
No 105
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=41.09 E-value=41 Score=32.15 Aligned_cols=74 Identities=14% Similarity=0.085 Sum_probs=47.2
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc------ccccCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN------IAETSIT 263 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn------IAEtsit 263 (735)
..+.+||.+|+++=+.++.+.+.... ..+..+..++|+.+..++...+.. ...|+++|+ +....+.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~iiv~Tp~~l~~~~~~~~~~ 164 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYS----YKGLKSICIYGGRNRNGQIEDISK----GVDIIIATPGRLNDLQMNNSVN 164 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHC----CTTCCEEEECC------CHHHHHS----CCSEEEECHHHHHHHHHTTCCC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhc----ccCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcC
Confidence 45679999999999988888876642 224668889999887766555432 246999995 2233456
Q ss_pred CCCeEEEE
Q 047202 264 IDDVVYVF 271 (735)
Q Consensus 264 IpdV~~VI 271 (735)
+.++.+||
T Consensus 165 ~~~~~~lV 172 (228)
T 3iuy_A 165 LRSITYLV 172 (228)
T ss_dssp CTTCCEEE
T ss_pred cccceEEE
Confidence 77787766
No 106
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=40.76 E-value=28 Score=42.65 Aligned_cols=49 Identities=12% Similarity=0.241 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCHhhhhhccCCC--chHHHHHHHhhcccCC
Q 047202 371 AITTAISVLYEVGAIEGDEELTPLGHHLAKLPV--DVLIGKMMLFGGIFGC 419 (735)
Q Consensus 371 ~i~~a~~~L~~lgal~~~~~lT~lG~~l~~lp~--~p~~~k~l~~~~~~~c 419 (735)
.+++-+..|+.+|.||.++.+|..|+.++++.- +.-++-+|..|..-+.
T Consensus 916 ~~~~~~~vL~~l~~~~~~~~v~~kgr~a~~i~~~~el~~~e~~~~~~~~~l 966 (1108)
T 3l9o_A 916 DLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNEL 966 (1108)
T ss_dssp HHHHHHHHHHHHTSCTTTCCCSHHHHHHHC-CCTTHHHHHHHHHHHCCCSS
T ss_pred HHHHHHHHHHHcCCcCCCCcCcHHhHHHHHhcCccHHHHHHHHHhCcccCC
Confidence 356677889999999999999999999999974 6667778887775553
No 107
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=40.64 E-value=68 Score=30.95 Aligned_cols=76 Identities=9% Similarity=0.025 Sum_probs=43.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-----ccc-cCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-----IAE-TSIT 263 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-----IAE-tsit 263 (735)
..+.+||.+|.++-+.+..+.+..... ..+..+..++|+....++...+ ..+...|+++|+ ... ..+.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~l---~~~~~~Ilv~Tp~~l~~~l~~~~~~ 170 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGD---YMGATCHACIGGTNVRNEMQKL---QAEAPHIVVGTPGRVFDMLNRRYLS 170 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT---TTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSC
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhh---hcCceEEEEECCCchHHHHHHH---hcCCCCEEEECHHHHHHHHHhCCcC
Confidence 456899999999998888888765421 2245678888887765544332 234457999994 222 2355
Q ss_pred CCCeEEEE
Q 047202 264 IDDVVYVF 271 (735)
Q Consensus 264 IpdV~~VI 271 (735)
..++.+||
T Consensus 171 ~~~~~~lV 178 (237)
T 3bor_A 171 PKWIKMFV 178 (237)
T ss_dssp STTCCEEE
T ss_pred cccCcEEE
Confidence 66777666
No 108
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=38.96 E-value=62 Score=30.14 Aligned_cols=73 Identities=18% Similarity=0.137 Sum_probs=49.9
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-----c-cccCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-----I-AETSIT 263 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-----I-AEtsit 263 (735)
..+.+||.+|+.+-+.+..+.+..... .+.+..+||+.+..++...+.. ...|+++|+ . -...+.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~----~~~i~v~T~~~l~~~~~~~~~~ 141 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAP-----HLKVVAVYGGTGYGKQKEALLR----GADAVVATPGRALDYLRQGVLD 141 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCT-----TSCEEEECSSSCSHHHHHHHHH----CCSEEEECHHHHHHHHHHTSSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhh-----cceEEEEECCCChHHHHHHhhC----CCCEEEECHHHHHHHHHcCCcc
Confidence 356799999999988888888876531 2568889999877665544432 246999995 2 223455
Q ss_pred CCCeEEEE
Q 047202 264 IDDVVYVF 271 (735)
Q Consensus 264 IpdV~~VI 271 (735)
..++.+||
T Consensus 142 ~~~~~~iV 149 (207)
T 2gxq_A 142 LSRVEVAV 149 (207)
T ss_dssp CTTCSEEE
T ss_pred hhhceEEE
Confidence 66776666
No 109
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=37.47 E-value=1.3e+02 Score=28.94 Aligned_cols=73 Identities=11% Similarity=0.042 Sum_probs=50.5
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc------cccCCCCC
Q 047202 192 GAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI------AETSITID 265 (735)
Q Consensus 192 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI------AEtsitIp 265 (735)
+.+||.+|+++=+.+..+.+..... ..+..+..++|+.+..++.+.+.. ...|+|+|.- ....+.+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~----~~~Ivv~Tp~~l~~~l~~~~~~~~ 173 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSL---NTPLRSCVVYGGADTHSQIREVQM----GCHLLVATPGRLVDFIEKNKISLE 173 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHT---TSSCCEEEECSSSCSHHHHHHHSS----CCSEEEECHHHHHHHHHTTSBCCT
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhc---cCCceEEEEECCCCHHHHHHHhCC----CCCEEEECHHHHHHHHHcCCCChh
Confidence 5899999999988888887765422 124568889999888776665532 2469999962 22335667
Q ss_pred CeEEEE
Q 047202 266 DVVYVF 271 (735)
Q Consensus 266 dV~~VI 271 (735)
++.+||
T Consensus 174 ~~~~lV 179 (253)
T 1wrb_A 174 FCKYIV 179 (253)
T ss_dssp TCCEEE
T ss_pred hCCEEE
Confidence 777666
No 110
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=36.11 E-value=49 Score=40.02 Aligned_cols=63 Identities=10% Similarity=0.235 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCHhhhhhccCCC--chHHHHHHHhhcccCCh-hHHHHHHhhhcc
Q 047202 370 EAITTAISVLYEVGAIEGDEELTPLGHHLAKLPV--DVLIGKMMLFGGIFGCL-SPILSISAFLSY 432 (735)
Q Consensus 370 ~~i~~a~~~L~~lgal~~~~~lT~lG~~l~~lp~--~p~~~k~l~~~~~~~c~-~~~l~iaa~ls~ 432 (735)
..+++-+..|+.+|+||.++.+|..|+.++++.- +.-++-+|..|..-+.. .+++.++|++-.
T Consensus 817 ~~~~~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~v~ 882 (1010)
T 2xgj_A 817 DDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAF 882 (1010)
T ss_dssp HHHHHHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcCCCCcccHHHHHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeeeEe
Confidence 4577788899999999998999999999999986 56667777777655432 334444444443
No 111
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=34.55 E-value=37 Score=38.38 Aligned_cols=60 Identities=22% Similarity=0.098 Sum_probs=48.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCC--CCCccEEEEecc
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRP--PEKIRKVIIATN 256 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~--~~g~rkVIlaTn 256 (735)
.+|.+||..|..+=+....+.|... ++.+..+||+++..++..++... ..+..+||++|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~-------gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQL-------GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHH-------TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhc-------CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 3678999999999888888888764 45688999999999888776543 456678999998
No 112
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=34.18 E-value=99 Score=31.88 Aligned_cols=82 Identities=10% Similarity=0.039 Sum_probs=53.9
Q ss_pred HHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEeccc----
Q 047202 182 VCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATNI---- 257 (735)
Q Consensus 182 l~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTnI---- 257 (735)
+..+......+.+||.+|..+=+.+..+.+..... ..+..+..+||+.+..++...+. ...|+++|.-
T Consensus 80 ~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~ 151 (394)
T 1fuu_A 80 LQRIDTSVKAPQALMLAPTRELALQIQKVVMALAF---HMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFD 151 (394)
T ss_dssp HHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTT---TSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHH
T ss_pred HHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhc---cCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHH
Confidence 33343333566899999999988888877765421 22466889999998877766554 2469999842
Q ss_pred --cccCCCCCCeEEEE
Q 047202 258 --AETSITIDDVVYVF 271 (735)
Q Consensus 258 --AEtsitIpdV~~VI 271 (735)
....+...++.+||
T Consensus 152 ~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 152 NIQRRRFRTDKIKMFI 167 (394)
T ss_dssp HHHTTSSCCTTCCEEE
T ss_pred HHHhCCcchhhCcEEE
Confidence 12234456666555
No 113
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=34.01 E-value=1.2e+02 Score=29.74 Aligned_cols=75 Identities=9% Similarity=0.073 Sum_probs=52.0
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc------cccc-CC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN------IAET-SI 262 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn------IAEt-si 262 (735)
.++.+||..|+++=+.+..+.+..... ..+..+..++|+....++...+.. | ..|||+|+ +... .+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~---~-~~Iiv~Tp~~l~~~~~~~~~~ 197 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMT---HHVHTYGLIMGGSNRSAEAQKLGN---G-INIIVATPGRLLDHMQNTPGF 197 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTT---TCCSCEEEECSSSCHHHHHHHHHH---C-CSEEEECHHHHHHHHHHCTTC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHh---hcCceEEEEECCCCHHHHHHHhcC---C-CCEEEEcHHHHHHHHHccCCc
Confidence 356799999999999888888876432 224567888999888776655432 1 46999994 3222 35
Q ss_pred CCCCeEEEE
Q 047202 263 TIDDVVYVF 271 (735)
Q Consensus 263 tIpdV~~VI 271 (735)
...++.+||
T Consensus 198 ~~~~l~~lV 206 (262)
T 3ly5_A 198 MYKNLQCLV 206 (262)
T ss_dssp CCTTCCEEE
T ss_pred ccccCCEEE
Confidence 677887765
No 114
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=34.01 E-value=1.5e+02 Score=30.78 Aligned_cols=73 Identities=16% Similarity=0.072 Sum_probs=51.3
Q ss_pred CcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-----ccc-cCCCCC
Q 047202 192 GAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-----IAE-TSITID 265 (735)
Q Consensus 192 g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-----IAE-tsitIp 265 (735)
..+||.+|+++=+.++.+.+..... ..++.+..+||+.+..++.+.+.. ...|+++|+ ..+ ..+...
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~ 174 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSY---RSRVRPCVVYGGADIGQQIRDLER----GCHLLVATPGRLVDMMERGKIGLD 174 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHT---TSSCCEEEECSSSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSBCCT
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhC---cCCceEEEEECCCCHHHHHHHhhC----CCCEEEEChHHHHHHHHcCCcChh
Confidence 4699999999998888887765421 224678899999998877665543 236999996 222 234566
Q ss_pred CeEEEE
Q 047202 266 DVVYVF 271 (735)
Q Consensus 266 dV~~VI 271 (735)
++.+||
T Consensus 175 ~~~~iV 180 (417)
T 2i4i_A 175 FCKYLV 180 (417)
T ss_dssp TCCEEE
T ss_pred hCcEEE
Confidence 777666
No 115
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=33.93 E-value=1.2e+02 Score=32.18 Aligned_cols=74 Identities=18% Similarity=0.128 Sum_probs=52.5
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-----ccc-cCCCC
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-----IAE-TSITI 264 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-----IAE-tsitI 264 (735)
...+||..|+++=+.+..+.+..... ..++.+..+||+.+..+|...+.. ...|+++|+ ..+ ..+..
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~---~~~~~~~~~~gg~~~~~~~~~l~~----~~~Ivv~Tp~~l~~~l~~~~~~l 201 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAF---ESYLKIGIVYGGTSFRHQNECITR----GCHVVIATPGRLLDFVDRTFITF 201 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTT---TSSCCCCEECTTSCHHHHHHHHTT----CCSEEEECHHHHHHHHHTTSCCC
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhc---cCCcEEEEEECCCCHHHHHHHhhc----CCCEEEEChHHHHHHHHhCCccc
Confidence 45899999999988888887765421 224567889999998888776643 246999995 222 34567
Q ss_pred CCeEEEE
Q 047202 265 DDVVYVF 271 (735)
Q Consensus 265 pdV~~VI 271 (735)
.++.+||
T Consensus 202 ~~~~~lV 208 (434)
T 2db3_A 202 EDTRFVV 208 (434)
T ss_dssp TTCCEEE
T ss_pred ccCCeEE
Confidence 7787766
No 116
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=32.62 E-value=12 Score=44.20 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=23.2
Q ss_pred CccEEEEccccc-CCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC
Q 047202 14 GVTHVIVDEVHE-RSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV 61 (735)
Q Consensus 14 ~~s~vIiDEvHE-R~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~ 61 (735)
++++|||||+|. ++..+-.. ..++.+ +.-+.+++|||+
T Consensus 367 ~w~~vIvDEaH~lkn~~s~~~-~~l~~l---------~~~~rl~LTgTP 405 (800)
T 3mwy_W 367 KWQFMAVDEAHRLKNAESSLY-ESLNSF---------KVANRMLITGTP 405 (800)
T ss_dssp EEEEEEETTGGGGCCSSSHHH-HHHTTS---------EEEEEEEECSCC
T ss_pred CcceeehhhhhhhcCchhHHH-HHHHHh---------hhccEEEeeCCc
Confidence 578999999996 33333222 122211 224578899998
No 117
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=32.47 E-value=62 Score=30.68 Aligned_cols=71 Identities=8% Similarity=-0.009 Sum_probs=44.5
Q ss_pred HHHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCC-CCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc
Q 047202 182 VCHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGG-PSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN 256 (735)
Q Consensus 182 l~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~-~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn 256 (735)
+..+......+.+||.+|+.+-+.+..+.+........ ..+..+..++|+.+..++.+.+. +...|+++|+
T Consensus 63 l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp 134 (219)
T 1q0u_A 63 MEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN----VQPHIVIGTP 134 (219)
T ss_dssp HHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCS----SCCSEEEECH
T ss_pred HHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcC----CCCCEEEeCH
Confidence 33333333456899999999988888877765432211 11456888999987665543332 2346999995
No 118
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=30.06 E-value=37 Score=41.49 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=47.8
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN 256 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn 256 (735)
.++.+||..|+++=+.++.+.+.... ..++.+..+||+.+..++...+.....|...|||+|+
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~----~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp 182 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLA----DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST 182 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTS----CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEH
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhh----CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECH
Confidence 56789999999999999999887622 2357799999999985554444444455567999995
No 119
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=29.26 E-value=1.8e+02 Score=30.10 Aligned_cols=75 Identities=8% Similarity=0.033 Sum_probs=51.1
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-----cc-ccCCC
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-----IA-ETSIT 263 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-----IA-Etsit 263 (735)
..+.+||.+|..+=+.+..+.+..... ..+..+..++|+....++..... +...|+++|. .. .....
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~----~~~~Ivv~T~~~l~~~~~~~~~~ 160 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGK---HCGISCMVTTGGTNLRDDILRLN----ETVHILVGTPGRVLDLASRKVAD 160 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTT---TTTCCEEEECSSSCHHHHHHHTT----SCCSEEEECHHHHHHHHHTTCSC
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhc---ccCceEEEEeCCcchHHHHHHhc----CCCCEEEEchHHHHHHHHhCCcc
Confidence 455899999999988888887765421 22456888999988776654432 2347999994 22 23356
Q ss_pred CCCeEEEE
Q 047202 264 IDDVVYVF 271 (735)
Q Consensus 264 IpdV~~VI 271 (735)
+.++.+||
T Consensus 161 ~~~~~~vI 168 (400)
T 1s2m_A 161 LSDCSLFI 168 (400)
T ss_dssp CTTCCEEE
T ss_pred cccCCEEE
Confidence 77777666
No 120
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=29.14 E-value=48 Score=31.25 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=23.8
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCC
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSAT 60 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT 60 (735)
...+-.+|||||+|. ++.+.+-.++ ..+... .++..+|+.+-.
T Consensus 123 ~~~~~~vlviDe~~~--l~~~~~~~l~-~~l~~~----~~~~~~i~~t~~ 165 (250)
T 1njg_A 123 ARGRFKVYLIDEVHM--LSRHSFNALL-KTLEEP----PEHVKFLLATTD 165 (250)
T ss_dssp SSSSSEEEEEETGGG--SCHHHHHHHH-HHHHSC----CTTEEEEEEESC
T ss_pred hcCCceEEEEECccc--ccHHHHHHHH-HHHhcC----CCceEEEEEeCC
Confidence 344568999999996 3333333333 333322 245667766543
No 121
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=27.87 E-value=41 Score=37.23 Aligned_cols=59 Identities=17% Similarity=0.147 Sum_probs=48.2
Q ss_pred CCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc
Q 047202 191 EGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN 256 (735)
Q Consensus 191 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn 256 (735)
+|.+||..|..+=+....+.|... +..+..+||+.+..++..++.....|..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~-------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN-------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 578999999999888888888653 45688899999999888777666667778999885
No 122
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=27.18 E-value=61 Score=33.42 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=32.3
Q ss_pred CCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCCh
Q 047202 13 TGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDS 63 (735)
Q Consensus 13 ~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~ 63 (735)
....+|||||+|--. +.|+|..+++..- . ...++-+|+.++|++.
T Consensus 131 ~~~~ii~lDE~d~l~-~q~~L~~l~~~~~--~---~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 131 KRKTLILIQNPENLL-SEKILQYFEKWIS--S---KNSKLSIICVGGHNVT 175 (318)
T ss_dssp SCEEEEEEECCSSSC-CTHHHHHHHHHHH--C---SSCCEEEEEECCSSCC
T ss_pred CCceEEEEecHHHhh-cchHHHHHHhccc--c---cCCcEEEEEEecCccc
Confidence 345789999999755 7888888886422 1 1245778889999964
No 123
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=26.51 E-value=1.3e+02 Score=31.28 Aligned_cols=76 Identities=12% Similarity=0.004 Sum_probs=52.1
Q ss_pred CCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-----ccc-cCC
Q 047202 189 CGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-----IAE-TSI 262 (735)
Q Consensus 189 ~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-----IAE-tsi 262 (735)
...+.+||.+|+.+=+.+..+.+.... ...+..+..++|+....++.+.... ...|+++|+ ... ..+
T Consensus 103 ~~~~~~lil~Pt~~L~~q~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~----~~~ivv~Tp~~l~~~l~~~~~ 175 (410)
T 2j0s_A 103 VRETQALILAPTRELAVQIQKGLLALG---DYMNVQCHACIGGTNVGEDIRKLDY----GQHVVAGTPGRVFDMIRRRSL 175 (410)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHT---TTTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHTTSS
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHHHh---ccCCeEEEEEECCCCHHHHHHHhhc----CCCEEEcCHHHHHHHHHhCCc
Confidence 356789999999998888888776532 2224668889999988877665532 136999995 222 245
Q ss_pred CCCCeEEEE
Q 047202 263 TIDDVVYVF 271 (735)
Q Consensus 263 tIpdV~~VI 271 (735)
...++.+||
T Consensus 176 ~~~~~~~vV 184 (410)
T 2j0s_A 176 RTRAIKMLV 184 (410)
T ss_dssp CCTTCCEEE
T ss_pred cHhheeEEE
Confidence 566676655
No 124
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=25.79 E-value=1.4e+02 Score=30.76 Aligned_cols=62 Identities=8% Similarity=0.147 Sum_probs=44.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN 256 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn 256 (735)
..+.+||.+|+.+=+++..+.+...... .++..+..+||+.+..++...+.. +...|+++|.
T Consensus 75 ~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~---~~~~iiv~T~ 136 (391)
T 1xti_A 75 GQVSVLVMCHTRELAFQISKEYERFSKY--MPNVKVAVFFGGLSIKKDEEVLKK---NCPHIVVGTP 136 (391)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTT--CTTCCEEEECTTSCHHHHHHHHHH---SCCSEEEECH
T ss_pred CCeeEEEECCCHHHHHHHHHHHHHHHhh--CCCeEEEEEeCCCCHHHHHHHHhc---CCCCEEEECH
Confidence 4568999999999888887777654221 124678899999998877666542 3347899985
No 125
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=25.07 E-value=40 Score=38.19 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=24.4
Q ss_pred CccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCC
Q 047202 14 GVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSAT 60 (735)
Q Consensus 14 ~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT 60 (735)
.+++|||||++ .++.+.+-.+++.+ .++.|+||+.-.
T Consensus 262 ~~d~lIIDEAs--ml~~~~~~~Ll~~l--------~~~~~liLvGD~ 298 (608)
T 1w36_D 262 HLDVLVVDEAS--MIDLPMMSRLIDAL--------PDHARVIFLGDR 298 (608)
T ss_dssp SCSEEEECSGG--GCBHHHHHHHHHTC--------CTTCEEEEEECT
T ss_pred CCCEEEEechh--hCCHHHHHHHHHhC--------CCCCEEEEEcch
Confidence 78999999999 45555544444422 145788887543
No 126
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=24.98 E-value=1e+02 Score=37.07 Aligned_cols=74 Identities=28% Similarity=0.376 Sum_probs=51.5
Q ss_pred CCCCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCC-ChHHHHhhhC-----CCCeEeeCCceec
Q 047202 11 NLTGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATV-DSNLFSRYFG-----DCPVITAEGRTHP 84 (735)
Q Consensus 11 ~L~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~-~~~~f~~yF~-----~~pvi~i~gr~~p 84 (735)
.+.++++|||||||. -.+.++-.. +..++... .++.++|+||||+ +...|++||+ .+.++..++|.+|
T Consensus 144 ~l~~l~lvViDEaH~-l~d~~~g~~-~e~ii~~l----~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~p 217 (997)
T 4a4z_A 144 LIRDVEFVIFDEVHY-VNDQDRGVV-WEEVIIML----PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVP 217 (997)
T ss_dssp GGGGEEEEEECCTTC-CCTTCTTCC-HHHHHHHS----CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSC
T ss_pred hhcCCCEEEEECccc-ccccchHHH-HHHHHHhc----ccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCcc
Confidence 578999999999994 333222111 11222222 1579999999999 8899999996 3457788899999
Q ss_pred ceEEec
Q 047202 85 VTTYFL 90 (735)
Q Consensus 85 V~~~~l 90 (735)
++.++.
T Consensus 218 l~~~v~ 223 (997)
T 4a4z_A 218 LEINIW 223 (997)
T ss_dssp EEEEEE
T ss_pred ceEEEe
Confidence 986653
No 127
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=24.16 E-value=65 Score=33.25 Aligned_cols=46 Identities=17% Similarity=0.127 Sum_probs=32.2
Q ss_pred CCCCCCC--CCCHhhhhhccCCCchHHHHHHHhhcccCC-hhHHHHHHh
Q 047202 383 GAIEGDE--ELTPLGHHLAKLPVDVLIGKMMLFGGIFGC-LSPILSISA 428 (735)
Q Consensus 383 gal~~~~--~lT~lG~~l~~lp~~p~~~k~l~~~~~~~c-~~~~l~iaa 428 (735)
|++++++ ..|++|+.+|.+.|++...+++.....-.+ ...++.+.|
T Consensus 1 ~~~~~~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils 49 (328)
T 3im1_A 1 GAMEATEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLS 49 (328)
T ss_dssp ---CCCCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHH
T ss_pred CCccCCCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhc
Confidence 5677666 468999999999999999999997765444 334454444
No 128
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=23.54 E-value=1.2e+02 Score=28.91 Aligned_cols=59 Identities=7% Similarity=-0.079 Sum_probs=41.6
Q ss_pred CCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc
Q 047202 190 GEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN 256 (735)
Q Consensus 190 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn 256 (735)
....+||.+|+.+=+.+..+.+.... ...++.+..+||+.+..++...+. ...||++|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~-----~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVG---KNHDFSAGLIIGGKDLKHEAERIN-----NINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHT---TTSSCCEEEECCC--CHHHHHHHT-----TCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHh---CCCCeeEEEEECCCCHHHHHHhCC-----CCCEEEECH
Confidence 34579999999999888888776542 122466888999988777666553 247999995
No 129
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=21.81 E-value=85 Score=29.23 Aligned_cols=40 Identities=28% Similarity=0.358 Sum_probs=24.6
Q ss_pred CCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCC
Q 047202 13 TGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVD 62 (735)
Q Consensus 13 ~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~ 62 (735)
.++++|||||+|-- +.+ ++..|+.+... +..+|+..-+.|
T Consensus 75 ~~~dvviIDE~Q~~--~~~-~~~~l~~l~~~-------~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 EDTRGVFIDEVQFF--NPS-LFEVVKDLLDR-------GIDVFCAGLDLT 114 (184)
T ss_dssp TTEEEEEECCGGGS--CTT-HHHHHHHHHHT-------TCEEEEEEESBC
T ss_pred CCCCEEEEECcccC--CHH-HHHHHHHHHHC-------CCCEEEEeeccc
Confidence 36889999999963 234 44455555542 466776554443
No 130
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=21.75 E-value=52 Score=29.70 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHcCCCCCCC----CCCHhhhhh
Q 047202 368 KEEAITTAISVLYEVGAIEGDE----ELTPLGHHL 398 (735)
Q Consensus 368 ~~~~i~~a~~~L~~lgal~~~~----~lT~lG~~l 398 (735)
+-..+..+++.|+.+|.++.+. .||+-|+..
T Consensus 97 sg~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~ 131 (144)
T 3u5c_T 97 SGSINRKVLQALEKIGIVEISPKGGRRISENGQRD 131 (144)
T ss_dssp CHHHHHHHHHHHHHTTSEECCSSSSCEECHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCeeecCCCCcEECHhHHHH
Confidence 4566899999999999998652 699999875
No 131
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.41 E-value=78 Score=34.89 Aligned_cols=48 Identities=19% Similarity=0.036 Sum_probs=27.3
Q ss_pred CCccEEEEcccccCCccHHHHHHHHHHHHHhhccCCCCCcEEEEecCCCChHHH
Q 047202 13 TGVTHVIVDEVHERSLLGDFLLIVLKDLLEKQSAHDTPKLKVILMSATVDSNLF 66 (735)
Q Consensus 13 ~~~s~vIiDEvHER~~~tD~LL~~lk~ll~~r~~~~~~~lklIlmSAT~~~~~f 66 (735)
.+..+|||||||.-+...--.+..|..++.. .+..+|+.+++.....+
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~------~~~~iIli~~~~~~~~l 194 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK------TSTPLILICNERNLPKM 194 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH------CSSCEEEEESCTTSSTT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh------cCCCEEEEEcCCCCccc
Confidence 4568999999996332211112334444433 24568888888754333
No 132
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=20.13 E-value=3e+02 Score=28.27 Aligned_cols=83 Identities=8% Similarity=0.031 Sum_probs=53.1
Q ss_pred HHHHccCCCCcEEEEcCCHHHHHHHHHHHHhhhccCCCCCcEEEEecCCCCHHHHHHhcCCCCCCccEEEEecc-----c
Q 047202 183 CHVDETCGEGAILVFLPGVAEIHILLDRLAASYRFGGPSSDWLLALHSSVASVDQKKVFLRPPEKIRKVIIATN-----I 257 (735)
Q Consensus 183 ~~i~~~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~~~~~i~~LHs~l~~~eq~~vf~~~~~g~rkVIlaTn-----I 257 (735)
..+......+.+||.+|..+=+.+..+.+...... .+..+..++++.....+...+.. +...|+++|. .
T Consensus 100 ~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~iiv~T~~~l~~~ 173 (414)
T 3eiq_A 100 QQIELDLKATQALVLAPTRELAQQIQKVVMALGDY---MGASCHACIGGTNVRAEVQKLQM---EAPHIIVGTPGRVFDM 173 (414)
T ss_dssp HHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGG---SCCCEEECCCCTTHHHHHHHHTT---TCCSEEEECHHHHHHH
T ss_pred HHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcc---cCceEEEEECCcchHHHHHHHhc---CCCCEEEECHHHHHHH
Confidence 33333335678999999999888888877654321 24567888888877766554432 3357999994 2
Q ss_pred cc-cCCCCCCeEEEE
Q 047202 258 AE-TSITIDDVVYVF 271 (735)
Q Consensus 258 AE-tsitIpdV~~VI 271 (735)
.. ..+...++.+||
T Consensus 174 l~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 174 LNRRYLSPKYIKMFV 188 (414)
T ss_dssp HHHTSSCSTTCCEEE
T ss_pred HHcCCcccccCcEEE
Confidence 22 234566666655
Done!