BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047203
(698 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 222 bits (565), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 227/720 (31%), Positives = 354/720 (49%), Gaps = 105/720 (14%)
Query: 35 LSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPD--GFSSLNSLQQLDLTGNSF-LGG 91
LSN+ N + + + + L+SLDL+ N L G + S + L+ L+++ N+ G
Sbjct: 84 LSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 92 RLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSL 151
++S L KL +L L LS NSISG + G L+ L + N+++GD+ +
Sbjct: 143 KVSGGL-KLNSLEVLDLSANSISGAN---VVGWVLSDGCGELKHLAISGNKISGDV--DV 196
Query: 152 GYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNG-FPESFGQLSAIEVLDLD 210
NL +L++ N+F IP +G+ + L+ L +S N+++G F + + +++L++
Sbjct: 197 SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 211 ENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPF------KLTFIKIRS 264
NQ+ G I ++L + +SL N + IP F LT + +
Sbjct: 256 SNQFVGPIPPLPLKSL------------QYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 265 CQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSL 324
P + + + L +L L++ S +P L LD+ NE SG +P SL
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 325 GFRFPG--TVDLSSNSFEGP-LPLWSFN----VTKLYLNNNSFSGPIPRDFGQKIPFLTD 377
T+DLSSN+F GP LP N + +LYL NN F+G IP L
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVS 422
Query: 378 LDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEI 437
L +SFN L+G++P S+G+L +L L +LW N+ L GEI
Sbjct: 423 LHLSFNYLSGTIPSSLGSLSKLRDL------------KLWLNM------------LEGEI 458
Query: 438 PDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLS 497
P + + ++ LIL N ++GE+P L NC+ ++ + L +N+L+G IP WIG + +L+
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLA 517
Query: 498 ILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCV--------GNF-------- 541
IL+L +N F+G IP EL +L LDL+ N +G IP+ + NF
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 542 ---SRMKIEPPDS---VEYEG--SLQV--------------VLKGTQYVFYSTLYLVNLM 579
MK E + +E++G S Q+ V G + + +
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 580 DLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIP 639
D+S N LSG +P E+ + +L LNL N + G IP ++G L L LDLS NKL G IP
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Query: 640 PSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYEGNLALCGDPLPERC--SEIDG 697
+M +LT + ++LS NNLSG IP++ QF++ P+ + N LCG PLP RC S DG
Sbjct: 698 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP-PAKFLNNPGLCGYPLP-RCDPSNADG 755
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 157/501 (31%), Positives = 234/501 (46%), Gaps = 71/501 (14%)
Query: 16 PIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNIT-RLSSLDLNTNDLQGDIPDGFSS 74
PIPP L SLQ L L+ N F +IP +L L+ LDL+ N G +P F S
Sbjct: 262 PIPP-----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 75 LNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLE 134
+ L+ L L+ N+F G L K+ L+ L LS N SGE+ + + LS +SLL
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS----ASLL- 371
Query: 135 KLELGFNQLTGD-LPNSLGYLKN-LRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMN 192
L+L N +G LPN KN L+ L L +N F G IPP++ N + L L+LS N ++
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431
Query: 193 G-FPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHW 251
G P S G LS + L L N EG I + E+ K E + L FN
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQ----------ELMYVKTLETLILDFN----- 476
Query: 252 IPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDV 311
L + P+ L N T L + L+N R++ +P W +L+ L L +
Sbjct: 477 --------------DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKL 521
Query: 312 GSNELSGRIPNSLG-FRFPGTVDLSSNSFEGPLPLWSFNVTK------------LYLNNN 358
+N SG IP LG R +DL++N F G +P F + +Y+ N+
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 359 S-------------FSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVIS 405
F G I + ++ +I+ G + N ++ L +S
Sbjct: 582 GMKKECHGAGNLLEFQG-IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 406 NNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSL 465
N LSG IP+ ++ L+IL++ +N +SG IPD +G L + L L +N + G +P ++
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 466 KNCSMMDSLDLGDNQLSGNIP 486
+M+ +DL +N LSG IP
Sbjct: 701 SALTMLTEIDLSNNNLSGPIP 721
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 106/233 (45%), Gaps = 24/233 (10%)
Query: 451 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG-ESMPSLSILRLRSNY--FN 507
L N+HI+G V K + + SLDL N LSG + S L L + SN F
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 508 GTIPPELCKLSALHILDLSHNNLSG------FIPSCVGNFSRMKIEPPD-SVEYEGSLQV 560
G + L KL++L +LDLS N++SG + G + I S + + S V
Sbjct: 142 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 561 VLK---------GTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLV 611
L+ T F + +D+S N LSG+ ++ L LN+S N V
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 612 GKIPTQIGKLEWLESLDLSKNKLSGSIPPSMV-SLTFMNHLNLSYNNLSGEIP 663
G IP L+ L+ L L++NK +G IP + + + L+LS N+ G +P
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 26 NFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG 85
N S+ LD+S N + IP + ++ L L+L ND+ G IPD L L LDL+
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDF 120
N L GR+ + + L L + LS N++SG + +
Sbjct: 690 NK-LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 227/720 (31%), Positives = 354/720 (49%), Gaps = 105/720 (14%)
Query: 35 LSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPD--GFSSLNSLQQLDLTGNSF-LGG 91
LSN+ N + + + + L+SLDL+ N L G + S + L+ L+++ N+ G
Sbjct: 81 LSNSHINGSVSGFKCSAS-LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 92 RLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSL 151
++S L KL +L L LS NSISG + G L+ L + N+++GD+ +
Sbjct: 140 KVSGGL-KLNSLEVLDLSANSISGAN---VVGWVLSDGCGELKHLAISGNKISGDV--DV 193
Query: 152 GYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNG-FPESFGQLSAIEVLDLD 210
NL +L++ N+F IP +G+ + L+ L +S N+++G F + + +++L++
Sbjct: 194 SRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 211 ENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPF------KLTFIKIRS 264
NQ+ G I ++L + +SL N + IP F LT + +
Sbjct: 253 SNQFVGPIPPLPLKSL------------QYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 300
Query: 265 CQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSL 324
P + + + L +L L++ S +P L LD+ NE SG +P SL
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 360
Query: 325 GFRFPG--TVDLSSNSFEGP-LPLWSFN----VTKLYLNNNSFSGPIPRDFGQKIPFLTD 377
T+DLSSN+F GP LP N + +LYL NN F+G IP L
Sbjct: 361 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVS 419
Query: 378 LDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEI 437
L +SFN L+G++P S+G+L +L L +LW N+ L GEI
Sbjct: 420 LHLSFNYLSGTIPSSLGSLSKLRDL------------KLWLNM------------LEGEI 455
Query: 438 PDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLS 497
P + + ++ LIL N ++GE+P L NC+ ++ + L +N+L+G IP WIG + +L+
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLA 514
Query: 498 ILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCV--------GNF-------- 541
IL+L +N F+G IP EL +L LDL+ N +G IP+ + NF
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 574
Query: 542 ---SRMKIEPPDS---VEYEG--SLQV--------------VLKGTQYVFYSTLYLVNLM 579
MK E + +E++G S Q+ V G + + +
Sbjct: 575 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634
Query: 580 DLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIP 639
D+S N LSG +P E+ + +L LNL N + G IP ++G L L LDLS NKL G IP
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Query: 640 PSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYEGNLALCGDPLPERC--SEIDG 697
+M +LT + ++LS NNLSG IP++ QF++ P+ + N LCG PLP RC S DG
Sbjct: 695 QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFP-PAKFLNNPGLCGYPLP-RCDPSNADG 752
Score = 143 bits (361), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 157/501 (31%), Positives = 234/501 (46%), Gaps = 71/501 (14%)
Query: 16 PIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNIT-RLSSLDLNTNDLQGDIPDGFSS 74
PIPP L SLQ L L+ N F +IP +L L+ LDL+ N G +P F S
Sbjct: 259 PIPP-----LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 75 LNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLE 134
+ L+ L L+ N+F G L K+ L+ L LS N SGE+ + + LS +SLL
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS----ASLL- 368
Query: 135 KLELGFNQLTGD-LPNSLGYLKN-LRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMN 192
L+L N +G LPN KN L+ L L +N F G IPP++ N + L L+LS N ++
Sbjct: 369 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 428
Query: 193 G-FPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHW 251
G P S G LS + L L N EG I + E+ K E + L FN
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQ----------ELMYVKTLETLILDFN----- 473
Query: 252 IPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDV 311
L + P+ L N T L + L+N R++ +P W +L+ L L +
Sbjct: 474 --------------DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKL 518
Query: 312 GSNELSGRIPNSLG-FRFPGTVDLSSNSFEGPLPLWSFNVTK------------LYLNNN 358
+N SG IP LG R +DL++N F G +P F + +Y+ N+
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 578
Query: 359 S-------------FSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVIS 405
F G I + ++ +I+ G + N ++ L +S
Sbjct: 579 GMKKECHGAGNLLEFQG-IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 406 NNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSL 465
N LSG IP+ ++ L+IL++ +N +SG IPD +G L + L L +N + G +P ++
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 466 KNCSMMDSLDLGDNQLSGNIP 486
+M+ +DL +N LSG IP
Sbjct: 698 SALTMLTEIDLSNNNLSGPIP 718
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 106/233 (45%), Gaps = 24/233 (10%)
Query: 451 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG-ESMPSLSILRLRSNY--FN 507
L N+HI+G V K + + SLDL N LSG + S L L + SN F
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 508 GTIPPELCKLSALHILDLSHNNLSG------FIPSCVGNFSRMKIEPPD-SVEYEGSLQV 560
G + L KL++L +LDLS N++SG + G + I S + + S V
Sbjct: 139 GKVSGGL-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 197
Query: 561 VLK---------GTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLV 611
L+ T F + +D+S N LSG+ ++ L LN+S N V
Sbjct: 198 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 612 GKIPTQIGKLEWLESLDLSKNKLSGSIPPSMV-SLTFMNHLNLSYNNLSGEIP 663
G IP L+ L+ L L++NK +G IP + + + L+LS N+ G +P
Sbjct: 258 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 26 NFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG 85
N S+ LD+S N + IP + ++ L L+L ND+ G IPD L L LDL+
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDF 120
N L GR+ + + L L + LS N++SG + +
Sbjct: 687 NK-LDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 134/299 (44%), Gaps = 45/299 (15%)
Query: 401 TLVISNNNLSG-------EIPQLWSNISSLYILDMSN-NTLSGEIPDSIGCLLSVRFLIL 452
T ++N +LSG IP +N+ L L + N L G IP +I L + +L +
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 453 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP 512
+ ++SG +P L + +LD N LSG +P I S+P+L + N +G IP
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPD 167
Query: 513 ELCKLSALHI-LDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYS 571
S L + +S N L+G IP N +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLN----------------------------- 198
Query: 572 TLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSK 631
+ +DLS N L G+ V + ++L++N L + ++G + L LDL
Sbjct: 199 ----LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRN 253
Query: 632 NKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYEGNLALCGDPLPE 690
N++ G++P + L F++ LN+S+NNL GEIP+ Q D S Y N LCG PLP
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF-DVSAYANNKCLCGSPLPA 311
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 104/232 (44%), Gaps = 49/232 (21%)
Query: 363 PIPRDFGQKIPFLTDLDIS-FNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNIS 421
PIP +P+L L I N+L G +P +I L QL L I++ N+SG IP S I
Sbjct: 67 PIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 422 SLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCS-MMDSLDLGDNQ 480
+L LD S N LSG +P SI L ++ + N ISG +P S + S + S+ + N+
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 481 LSGNIP--------AWIGESM-------------------------------------PS 495
L+G IP A++ S +
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 496 LSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIE 547
L+ L LR+N GT+P L +L LH L++S NNL G IP GN R +
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/277 (24%), Positives = 109/277 (39%), Gaps = 66/277 (23%)
Query: 147 LPNSLGYLKNLRYLELWD-NSFVGSIPPSIGNLTFLKELYLSSNQMNG-FPESFGQLSAI 204
+P+SL L L +L + N+ VG IPP+I LT L LY++ ++G P+ Q+ +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 205 EVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRS 264
LD N G +
Sbjct: 128 VTLDFSYNALSGTL---------------------------------------------- 141
Query: 265 CQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSL 324
P + + L + + RIS +P+ + + + N L+G+IP +
Sbjct: 142 -------PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194
Query: 325 GFRFPGTVDLSSNSFEGPLPLW---SFNVTKLYLNNNSFSGPIPRDFGQKIPF---LTDL 378
VDLS N EG + N K++L NS + D G K+ L L
Sbjct: 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----FDLG-KVGLSKNLNGL 249
Query: 379 DISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQ 415
D+ N + G++P+ + L+ L +L +S NNL GEIPQ
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 119/273 (43%), Gaps = 42/273 (15%)
Query: 53 RLSSLDLNTNDLQGD--IPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSR 110
R+++LDL+ +L IP ++L L L + G + L G + + KL L L ++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 111 NSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGS 170
++SG + DF++ + L L+ +N L+G LP S+ L NL + N G+
Sbjct: 111 TNVSGAIPDFLSQIKT------LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164
Query: 171 IPPSIGNLTFL-KELYLSSNQMNG-FPESFGQLSAIEVLDLDENQWEGIITETHFRNLSN 228
IP S G+ + L + +S N++ G P +F L+ + +DL N EG F + N
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-DASVLFGSDKN 222
Query: 229 LKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNN 288
++I L K SL F++ + L L L N
Sbjct: 223 TQKIHLAK----NSLAFDLGKVGL-------------------------SKNLNGLDLRN 253
Query: 289 ARISDTVPNWFWQLDLALDELDVGSNELSGRIP 321
RI T+P QL L L+V N L G IP
Sbjct: 254 NRIYGTLPQGLTQLKF-LHSLNVSFNNLCGEIP 285
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 94/216 (43%), Gaps = 23/216 (10%)
Query: 16 PIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSL 75
PIPP T L L +++ + IP +L I L +LD + N L G +P SSL
Sbjct: 92 PIPP---AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 76 NSLQQLDLTGNSFLGGRLSRNLGKLCNLRT-LKLSRNSISGEVS-----------DFING 123
+L + GN + G + + G L T + +SRN ++G++ D
Sbjct: 149 PNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207
Query: 124 LSECTNSSLL------EKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGN 177
+ E S L +K+ L N L DL +G KNL L+L +N G++P +
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 178 LTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQ 213
L FL L +S N + G G L +V N+
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 110/273 (40%), Gaps = 60/273 (21%)
Query: 139 GFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNG-FPES 197
G N L G +P ++ L L YL + + G+IP + + L L S N ++G P S
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 198 FGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKL 257
L + + D N+ G I +++ S KL ++++ N + IPP
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYG---------SFSKLFTSMTISRNRLTGKIPP--- 192
Query: 258 TFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELS 317
TF L F RN E VL GS++ +
Sbjct: 193 TF-----ANLNLAFVDLSRNMLEGDASVL------------------------FGSDKNT 223
Query: 318 GRI---PNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPF 374
+I NSL F G V LS N+ L L NN G +P+ Q + F
Sbjct: 224 QKIHLAKNSLAFDL-GKVGLSK------------NLNGLDLRNNRIYGTLPQGLTQ-LKF 269
Query: 375 LTDLDISFNSLNGSVPKSIGNLQQLLTLVISNN 407
L L++SFN+L G +P+ GNLQ+ +NN
Sbjct: 270 LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 90/194 (46%), Gaps = 14/194 (7%)
Query: 31 QVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDG-FSSLNSLQQLDLTGNSFL 89
+ LDL +N +S +T+L L LN N LQ +P G F L +L+ L +T N
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQ 98
Query: 90 GGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPN 149
+ +L NL L+L RN + + L++ T L LG+N+L
Sbjct: 99 ALPIGV-FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY------LSLGYNELQSLPKG 151
Query: 150 SLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPE-SFGQLSAIEVLD 208
L +L+ L L++N + LT LK L L +NQ+ PE +F L +++L
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 209 LDENQWE----GII 218
L EN W+ GII
Sbjct: 212 LQENPWDCTCNGII 225
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 332 VDLSSNSFEGPLPLWSFN-VTKL---YLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNG 387
+DL SN LP +F+ +TKL YLN+N +P +++ L L ++ N L
Sbjct: 42 LDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ- 98
Query: 388 SVPKSIGNLQQLLTLV---ISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCL 444
++P IG QL+ L + N L P+++ +++ L L + N L L
Sbjct: 99 ALP--IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 445 LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 504
S++ L L NN + + + + +L L +NQL +P +S+ L +L+L+ N
Sbjct: 157 TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Query: 505 YFNGTI 510
++ T
Sbjct: 216 PWDCTC 221
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 15 LPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDG-FS 73
LPI F +L L L N S P ++T+L+ L L N+LQ +P G F
Sbjct: 100 LPIGVFD----QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFD 154
Query: 74 SLNSLQQLDLTGNSFLGGRLSRN-LGKLCNLRTLKLSRNSIS 114
L SL++L L N R+ KL L+TLKL N +
Sbjct: 155 KLTSLKELRLYNNQL--KRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 29/130 (22%)
Query: 579 MDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGK-LEWLESLDLSKNKLSG- 636
+DL SN LS RL L L L+ N L +P I K L+ LE+L ++ NKL
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 637 ----------------------SIPPSMV-SLTFMNHLNLSYNNLSGEIPK--VNQFQSL 671
S+PP + SLT + +L+L YN L +PK ++ SL
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSL 159
Query: 672 KDPSIYEGNL 681
K+ +Y L
Sbjct: 160 KELRLYNNQL 169
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 110/232 (47%), Gaps = 39/232 (16%)
Query: 23 PSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLD 82
P N T+L L L NN P L N+T L+ L+L++N + DI S L SLQQL+
Sbjct: 102 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLN 157
Query: 83 LTGNSFLGGR------------LSRN-------LGKLCNLRTLKLSRNSISGEVSDFING 123
+ N + +S N L KL NL +L + N IS I
Sbjct: 158 FSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD-----ITP 212
Query: 124 LSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKE 183
L TN L++L L NQL D+ +L L NL L+L +N P + LT L E
Sbjct: 213 LGILTN---LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 265
Query: 184 LYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY 235
L L +NQ++ G L+A+ L+L+ENQ E I + NL NL ++LY
Sbjct: 266 LKLGANQISNISPLAG-LTALTNLELNENQLEDI---SPISNLKNLTYLTLY 313
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 130/302 (43%), Gaps = 42/302 (13%)
Query: 70 DGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTN 129
DG LN+L Q++ + N +NL KL ++ ++ N I+ I L+ TN
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL---MNNNQIAD-----ITPLANLTN 108
Query: 130 SSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSN 189
L L L NQ+T P L L NL LEL N+ S ++ LT L++L SSN
Sbjct: 109 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNFSSN 161
Query: 190 QMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISS 249
Q+ + L+ +E LD+ N+ I NL SL + IS
Sbjct: 162 QVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLE-----SLIATNNQIS------- 208
Query: 250 HWIPPF----KLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLA 305
I P L + + QL K L + T LT L L N +IS+ P
Sbjct: 209 -DITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLT---K 262
Query: 306 LDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSF-NVT--KLYLNNNSFSG 362
L EL +G+N++S P + G ++L+ N E P+ + N+T LY NN S
Sbjct: 263 LTELKLGANQISNISPLA-GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 321
Query: 363 PI 364
P+
Sbjct: 322 PV 323
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 124/313 (39%), Gaps = 70/313 (22%)
Query: 257 LTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVP--------------NWFWQL 302
LT I + QL P L+N T+L +++NN +I+D P N +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI 122
Query: 303 D-----LALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNN 357
D L+ L++ SN +S I G ++ SSN PL +
Sbjct: 123 DPLKNLTNLNRLELSSNTISD-ISALSGLTSLQQLNFSSNQVTDLKPLANLTT------- 174
Query: 358 NSFSGPIPRDFGQKIPFLTDLDISFNSLNG-SVPKSIGNLQQLLTLVISNNNLSGEIP-Q 415
L LDIS N ++ SV + NL+ +L+ +NN +S P
Sbjct: 175 -----------------LERLDISSNKVSDISVLAKLTNLE---SLIATNNQISDITPLG 214
Query: 416 LWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLI---LCNNHISGEVPPSLKNCSMMD 472
+ +N+ L +L+G IG L S+ L L NN IS P L + +
Sbjct: 215 ILTNLDEL--------SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 264
Query: 473 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSG 532
L LG NQ+S NI G + +L+ L L N P + L L L L NN+S
Sbjct: 265 ELKLGANQIS-NISPLAG--LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 319
Query: 533 FIP-SCVGNFSRM 544
P S + R+
Sbjct: 320 ISPVSSLTKLQRL 332
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 109/232 (46%), Gaps = 39/232 (16%)
Query: 23 PSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLD 82
P N T+L L L NN P L N+T L+ L+L++N + DI S L SLQQL
Sbjct: 102 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLS 157
Query: 83 LTGNSFLGGR------------LSRN-------LGKLCNLRTLKLSRNSISGEVSDFING 123
+ N + +S N L KL NL +L + N IS I
Sbjct: 158 FSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD-----ITP 212
Query: 124 LSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKE 183
L TN L++L L NQL D+ +L L NL L+L +N P + LT L E
Sbjct: 213 LGILTN---LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 265
Query: 184 LYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY 235
L L +NQ++ G L+A+ L+L+ENQ E I + NL NL ++LY
Sbjct: 266 LKLGANQISNISPLAG-LTALTNLELNENQLEDI---SPISNLKNLTYLTLY 313
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 130/302 (43%), Gaps = 42/302 (13%)
Query: 70 DGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTN 129
DG LN+L Q++ + N +NL KL ++ ++ N I+ I L+ TN
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL---MNNNQIAD-----ITPLANLTN 108
Query: 130 SSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSN 189
L L L NQ+T P L L NL LEL N+ S ++ LT L++L SSN
Sbjct: 109 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSN 161
Query: 190 QMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISS 249
Q+ + L+ +E LD+ N+ I NL SL + IS
Sbjct: 162 QVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLE-----SLIATNNQIS------- 208
Query: 250 HWIPPF----KLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLA 305
I P L + + QL K L + T LT L L N +IS+ P
Sbjct: 209 -DITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLT---K 262
Query: 306 LDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSF-NVT--KLYLNNNSFSG 362
L EL +G+N++S P + G ++L+ N E P+ + N+T LY NN S
Sbjct: 263 LTELKLGANQISNISPLA-GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 321
Query: 363 PI 364
P+
Sbjct: 322 PV 323
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 127/300 (42%), Gaps = 44/300 (14%)
Query: 257 LTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLA----LDELDVG 312
LT I + QL P L+N T+L +++NN +I+D P LA L L +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-------LANLTNLTGLTLF 115
Query: 313 SNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFG--Q 370
+N+++ P ++LSSN+ L L SFS D
Sbjct: 116 NNQITDIDPLK-NLTNLNRLELSSNTISDISALSGLT----SLQQLSFSSNQVTDLKPLA 170
Query: 371 KIPFLTDLDISFNSLNG-SVPKSIGNLQQLLTLVISNNNLSGEIP-QLWSNISSLYILDM 428
+ L LDIS N ++ SV + NL+ +L+ +NN +S P + +N+ L
Sbjct: 171 NLTTLERLDISSNKVSDISVLAKLTNLE---SLIATNNQISDITPLGILTNLDEL----- 222
Query: 429 SNNTLSGEIPDSIGCLLSVRFLI---LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI 485
+L+G IG L S+ L L NN IS P L + + L LG NQ+S NI
Sbjct: 223 ---SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NI 276
Query: 486 PAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIP-SCVGNFSRM 544
G + +L+ L L N P + L L L L NN+S P S + R+
Sbjct: 277 SPLAG--LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 109/232 (46%), Gaps = 39/232 (16%)
Query: 23 PSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLD 82
P N T+L L L NN P L N+T L+ L+L++N + DI S L SLQQL
Sbjct: 102 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLS 157
Query: 83 LTGNSFLGGR------------LSRN-------LGKLCNLRTLKLSRNSISGEVSDFING 123
+ N + +S N L KL NL +L + N IS I
Sbjct: 158 FSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD-----ITP 212
Query: 124 LSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKE 183
L TN L++L L NQL D+ +L L NL L+L +N P + LT L E
Sbjct: 213 LGILTN---LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 265
Query: 184 LYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY 235
L L +NQ++ G L+A+ L+L+ENQ E I + NL NL ++LY
Sbjct: 266 LKLGANQISNISPLAG-LTALTNLELNENQLEDI---SPISNLKNLTYLTLY 313
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 130/302 (43%), Gaps = 42/302 (13%)
Query: 70 DGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTN 129
DG LN+L Q++ + N +NL KL ++ ++ N I+ I L+ TN
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL---MNNNQIAD-----ITPLANLTN 108
Query: 130 SSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSN 189
L L L NQ+T P L L NL LEL N+ S ++ LT L++L SSN
Sbjct: 109 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSN 161
Query: 190 QMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISS 249
Q+ + L+ +E LD+ N+ I NL SL + IS
Sbjct: 162 QVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLE-----SLIATNNQIS------- 208
Query: 250 HWIPPF----KLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLA 305
I P L + + QL K L + T LT L L N +IS+ P
Sbjct: 209 -DITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLT---K 262
Query: 306 LDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSF-NVT--KLYLNNNSFSG 362
L EL +G+N++S P + G ++L+ N E P+ + N+T LY NN S
Sbjct: 263 LTELKLGANQISNISPLA-GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 321
Query: 363 PI 364
P+
Sbjct: 322 PV 323
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 127/300 (42%), Gaps = 44/300 (14%)
Query: 257 LTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLA----LDELDVG 312
LT I + QL P L+N T+L +++NN +I+D P LA L L +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-------LANLTNLTGLTLF 115
Query: 313 SNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFG--Q 370
+N+++ P ++LSSN+ L L SFS D
Sbjct: 116 NNQITDIDPLK-NLTNLNRLELSSNTISDISALSGLT----SLQQLSFSSNQVTDLKPLA 170
Query: 371 KIPFLTDLDISFNSLNG-SVPKSIGNLQQLLTLVISNNNLSGEIP-QLWSNISSLYILDM 428
+ L LDIS N ++ SV + NL+ +L+ +NN +S P + +N+ L
Sbjct: 171 NLTTLERLDISSNKVSDISVLAKLTNLE---SLIATNNQISDITPLGILTNLDEL----- 222
Query: 429 SNNTLSGEIPDSIGCLLSVRFLI---LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI 485
+L+G IG L S+ L L NN IS P L + + L LG NQ+S NI
Sbjct: 223 ---SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NI 276
Query: 486 PAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIP-SCVGNFSRM 544
G + +L+ L L N P + L L L L NN+S P S + R+
Sbjct: 277 SPLAG--LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRL 332
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 110/232 (47%), Gaps = 40/232 (17%)
Query: 23 PSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLD 82
P N T+L L L NN P L N+T L+ L+L++N + DI S L SLQQL+
Sbjct: 102 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLN 157
Query: 83 LTGNSFLGGR------------LSRN-------LGKLCNLRTLKLSRNSISGEVSDFING 123
GN + +S N L KL NL +L + N IS I
Sbjct: 158 F-GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD-----ITP 211
Query: 124 LSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKE 183
L TN L++L L NQL D+ +L L NL L+L +N P + LT L E
Sbjct: 212 LGILTN---LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 264
Query: 184 LYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY 235
L L +NQ++ G L+A+ L+L+ENQ E I + NL NL ++LY
Sbjct: 265 LKLGANQISNISPLAG-LTALTNLELNENQLEDI---SPISNLKNLTYLTLY 312
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 128/302 (42%), Gaps = 43/302 (14%)
Query: 70 DGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTN 129
DG LN+L Q++ + N +NL KL ++ ++ N I+ I L+ TN
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL---MNNNQIAD-----ITPLANLTN 108
Query: 130 SSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSN 189
L L L NQ+T P L L NL LEL N+ S ++ LT L++L N
Sbjct: 109 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNF-GN 160
Query: 190 QMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISS 249
Q+ + L+ +E LD+ N+ I NL SL + IS
Sbjct: 161 QVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLE-----SLIATNNQIS------- 207
Query: 250 HWIPPF----KLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLA 305
I P L + + QL K L + T LT L L N +IS+ P
Sbjct: 208 -DITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLT---K 261
Query: 306 LDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSF-NVT--KLYLNNNSFSG 362
L EL +G+N++S P + G ++L+ N E P+ + N+T LY NN S
Sbjct: 262 LTELKLGANQISNISPLA-GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 320
Query: 363 PI 364
P+
Sbjct: 321 PV 322
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 110/232 (47%), Gaps = 40/232 (17%)
Query: 23 PSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLD 82
P N T+L L L NN P L N+T L+ L+L++N + DI S L SLQQL+
Sbjct: 102 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLN 157
Query: 83 LTGNSFLGGR------------LSRN-------LGKLCNLRTLKLSRNSISGEVSDFING 123
GN + +S N L KL NL +L + N IS I
Sbjct: 158 F-GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD-----ITP 211
Query: 124 LSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKE 183
L TN L++L L NQL D+ +L L NL L+L +N P + LT L E
Sbjct: 212 LGILTN---LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 264
Query: 184 LYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY 235
L L +NQ++ G L+A+ L+L+ENQ E I + NL NL ++LY
Sbjct: 265 LKLGANQISNISPLAG-LTALTNLELNENQLEDI---SPISNLKNLTYLTLY 312
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 128/302 (42%), Gaps = 43/302 (14%)
Query: 70 DGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTN 129
DG LN+L Q++ + N +NL KL ++ ++ N I+ I L+ TN
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL---MNNNQIAD-----ITPLANLTN 108
Query: 130 SSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSN 189
L L L NQ+T P L L NL LEL N+ S ++ LT L++L N
Sbjct: 109 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLNF-GN 160
Query: 190 QMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISS 249
Q+ + L+ +E LD+ N+ I NL SL + IS
Sbjct: 161 QVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLE-----SLIATNNQIS------- 207
Query: 250 HWIPPF----KLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLA 305
I P L + + QL K L + T LT L L N +IS+ P
Sbjct: 208 -DITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLT---K 261
Query: 306 LDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSF-NVT--KLYLNNNSFSG 362
L EL +G+N++S P + G ++L+ N E P+ + N+T LY NN S
Sbjct: 262 LTELKLGANQISNISPLA-GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 320
Query: 363 PI 364
P+
Sbjct: 321 PV 322
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 116/246 (47%), Gaps = 42/246 (17%)
Query: 23 PSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLD 82
P N T+L L L NN P L N+T L+ L+L++N + DI S L SLQQL
Sbjct: 106 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLS 161
Query: 83 LTGNSFLGGR------------LSRN-------LGKLCNLRTLKLSRNSISGEVSDFING 123
GN + +S N L KL NL +L + N IS I
Sbjct: 162 F-GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD-----ITP 215
Query: 124 LSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKE 183
L TN L++L L NQL D+ +L L NL L+L +N P + LT L E
Sbjct: 216 LGILTN---LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 268
Query: 184 LYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISL 243
L L +NQ++ G L+A+ L+L+ENQ E I + NL NL ++LY NIS
Sbjct: 269 LKLGANQISNISPLAG-LTALTNLELNENQLEDI---SPISNLKNLTYLTLY--FNNISD 322
Query: 244 IFNISS 249
I +SS
Sbjct: 323 ISPVSS 328
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 128/302 (42%), Gaps = 43/302 (14%)
Query: 70 DGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTN 129
DG LN+L Q++ + N +NL KL ++ ++ N I+ I L+ TN
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL---MNNNQIAD-----ITPLANLTN 112
Query: 130 SSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSN 189
L L L NQ+T P L L NL LEL N+ S ++ LT L++L N
Sbjct: 113 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF-GN 164
Query: 190 QMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISS 249
Q+ + L+ +E LD+ N+ I NL SL + IS
Sbjct: 165 QVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLE-----SLIATNNQIS------- 211
Query: 250 HWIPPF----KLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLA 305
I P L + + QL K L + T LT L L N +IS+ P
Sbjct: 212 -DITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLT---K 265
Query: 306 LDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSF-NVT--KLYLNNNSFSG 362
L EL +G+N++S P + G ++L+ N E P+ + N+T LY NN S
Sbjct: 266 LTELKLGANQISNISPLA-GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 324
Query: 363 PI 364
P+
Sbjct: 325 PV 326
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 116/246 (47%), Gaps = 42/246 (17%)
Query: 23 PSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLD 82
P N T+L L L NN P L N+T L+ L+L++N + DI S L SLQQL
Sbjct: 107 PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLS 162
Query: 83 LTGNSFLGGR------------LSRN-------LGKLCNLRTLKLSRNSISGEVSDFING 123
GN + +S N L KL NL +L + N IS I
Sbjct: 163 F-GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD-----ITP 216
Query: 124 LSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKE 183
L TN L++L L NQL D+ +L L NL L+L +N P + LT L E
Sbjct: 217 LGILTN---LDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTE 269
Query: 184 LYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISL 243
L L +NQ++ G L+A+ L+L+ENQ E I + NL NL ++LY NIS
Sbjct: 270 LKLGANQISNISPLAG-LTALTNLELNENQLEDI---SPISNLKNLTYLTLY--FNNISD 323
Query: 244 IFNISS 249
I +SS
Sbjct: 324 ISPVSS 329
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 128/302 (42%), Gaps = 43/302 (14%)
Query: 70 DGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTN 129
DG LN+L Q++ + N +NL KL ++ ++ N I+ I L+ TN
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDIL---MNNNQIAD-----ITPLANLTN 113
Query: 130 SSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSN 189
L L L NQ+T P L L NL LEL N+ S ++ LT L++L N
Sbjct: 114 ---LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF-GN 165
Query: 190 QMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISS 249
Q+ + L+ +E LD+ N+ I NL SL + IS
Sbjct: 166 QVTDL-KPLANLTTLERLDISSNKVSDISVLAKLTNLE-----SLIATNNQIS------- 212
Query: 250 HWIPPF----KLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLA 305
I P L + + QL K L + T LT L L N +IS+ P
Sbjct: 213 -DITPLGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAPLSGLT---K 266
Query: 306 LDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSF-NVT--KLYLNNNSFSG 362
L EL +G+N++S P + G ++L+ N E P+ + N+T LY NN S
Sbjct: 267 LTELKLGANQISNISPLA-GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 325
Query: 363 PI 364
P+
Sbjct: 326 PV 327
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 16/164 (9%)
Query: 57 LDLNTNDLQGDIPDGFSSLNSLQQLDLTGNS----FLGGRLSRNLGKLCNLRTLKLSRNS 112
L+ N + G S+L LQ L L N F +++N+ +L TL +S NS
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS---SLETLDVSLNS 414
Query: 113 ISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIP 172
++ D C + + L L N LTG + L ++ L+L +N + SIP
Sbjct: 415 LNSHAYD-----RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIP 466
Query: 173 PSIGNLTFLKELYLSSNQMNGFPES-FGQLSAIEVLDLDENQWE 215
+ +L L+EL ++SNQ+ P+ F +L++++ + L +N W+
Sbjct: 467 KDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 130/530 (24%), Positives = 221/530 (41%), Gaps = 88/530 (16%)
Query: 79 QQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLEL 138
+ L L+ NS R+ ++ L LR L+LS N I DF L + LE L++
Sbjct: 55 KALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRS--LDFHVFLF----NQDLEYLDV 107
Query: 139 GFNQLTGDLPNSLGYLKNLRYLELWDNSF-VGSIPPSIGNLTFLKELYLSS---NQMNGF 194
N+L S + +LR+L+L N F V + GNLT L L LS+ Q++
Sbjct: 108 SHNRLQNI---SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLL 164
Query: 195 PESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISL-YKLSENISLIFNISSHWIP 253
P + LS I +LDL +G ET + N + L + + S+ N+S + +
Sbjct: 165 PVAHLHLSCI-LLDLVSYHIKG--GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALG 221
Query: 254 PFKLTFIKI--RSCQLGPKFPTWLRNQTELTTLVLNNA----RISDTVPNWFWQLDLALD 307
+L+ IK+ +CQ F + L L + L + + S + +FW ++
Sbjct: 222 HLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW--PRPVE 279
Query: 308 ELDVGSNELSGRIPNSLGFRFPGTV--DLSSNSFEGPLPLWS----------FNVTKLYL 355
L++ + ++ RI F + T L + + L+S N+ L +
Sbjct: 280 YLNIYNLTITERIDRE-EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338
Query: 356 NNNSF----SGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSG 411
++ F P P F T L+ + N SV + L++L TL++ N L
Sbjct: 339 SDTPFIHMVCPPSPSSF-------TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391
Query: 412 --EIPQLWSNISSLYILDMSNNTLSGEIPD-SIGCLLSVRFLILCNNHISGEV----PPS 464
++ + N+SSL LD+S N+L+ D + S+ L L +N ++G V PP
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK 451
Query: 465 LK-----------------NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 507
+K + + L++ NQL +P + + + SL + L N ++
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWD 510
Query: 508 GTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGS 557
T P + L N SG + + G+ + PDS + GS
Sbjct: 511 CTCP-------GIRYLSEWINKHSGVVRNSAGSVA------PDSAKCSGS 547
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 17/162 (10%)
Query: 28 TSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLN--SLQQLDLTG 85
+S L+ + N F + + RL +L L N L+ + N SL+ LD++
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412
Query: 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSISG----------EVSDFINGL-----SECTNS 130
NS R ++ L LS N ++G +V D N + T+
Sbjct: 413 NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHL 472
Query: 131 SLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIP 172
L++L + NQL L +L+Y+ L DN + + P
Sbjct: 473 QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 17 IPPFHFPSLNFTS-LQVLDLSNNGFNSKIPH-WLFNITRLSSLDLNTNDLQGDIPDGFSS 74
I P ++F S L+VL LS+N S H +LFN L LD++ N LQ
Sbjct: 64 ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN-QDLEYLDVSHNRLQNI---SCCP 119
Query: 75 LNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLS 109
+ SL+ LDL+ N F + + G L L L LS
Sbjct: 120 MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS 154
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 11/198 (5%)
Query: 22 FPSLNFTSLQVLDLSNNG--FNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQ 79
F ++ SL+ LDLS NG F F T L LDL+ N + + F L L+
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399
Query: 80 QLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELG 139
LD ++ L NL L +S + NGLS LE L++
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS------LEVLKMA 453
Query: 140 FNQLTGD-LPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPES- 197
N + LP+ L+NL +L+L P + +L+ L+ L ++SNQ+ P+
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Query: 198 FGQLSAIEVLDLDENQWE 215
F +L++++ + L N W+
Sbjct: 514 FDRLTSLQKIWLHTNPWD 531
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 127/540 (23%), Positives = 216/540 (40%), Gaps = 98/540 (18%)
Query: 33 LDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGR 92
LDLS N + F+ L LDL+ ++Q + SL+ L L LTGN
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---- 88
Query: 93 LSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLG 152
S LG L +L+ ++ E TN + LE +G
Sbjct: 89 QSLALGAFSGLSSLQ---KLVAVE-----------TNLASLENF-------------PIG 121
Query: 153 YLKNLRYLELWDN---SFVGSIPPSIGNLTFLKELYLSSNQMNGF--------------- 194
+LK L+ L + N SF +P NLT L+ L LSSN++
Sbjct: 122 HLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 195 --------PESFGQLSAIEVLDLDE----NQWEGI-ITETHFRNLSNLKEISLYKLSE-- 239
P +F Q A + + L + N ++ + + +T + L+ L E+ L E
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL-EVHRLVLGEFR 238
Query: 240 --------NISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARI 291
+ S + + + I F+L ++ + F L N + + + + R+
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIERV 297
Query: 292 SDTVPNWFWQ-LDL--------------ALDELDVGSNELSGRIPNSLGFRFPGTVDLSS 336
D N+ WQ L+L +L L SN+ G + + +DLS
Sbjct: 298 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLSR 356
Query: 337 N--SFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFG-QKIPFLTDLDISFNSLNGSVPKSI 393
N SF+G F T L + SF+G I + L LD ++L S+
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 394 G-NLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGE-IPDSIGCLLSVRFLI 451
+L+ L+ L IS+ + +++ +SSL +L M+ N+ +PD L ++ FL
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 452 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP 511
L + P + + S + L++ NQL ++P I + + SL + L +N ++ + P
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 130/315 (41%), Gaps = 32/315 (10%)
Query: 372 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNN 431
P L LD+S + + +L L TL+++ N + +S +SSL L
Sbjct: 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 432 TLSGEIPDSIGCLLSVRFLILCNNHI-SGEVPPSLKNCSMMDSLDLGDNQLSG--NIPAW 488
L+ IG L +++ L + +N I S ++P N + ++ LDL N++
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
Query: 489 IGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLS-GFIPSCVGNFSRMKI- 546
+ MP L++ S I P K LH L L +N S + +C+ + +++
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230
Query: 547 -------------EPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSS--NNLSGEMP 591
E D EG + ++ + Y YL +++DL + N+S
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA-YLDYYLDDIIDLFNCLTNVSSFSL 289
Query: 592 VELT-RLIHLGTLNLSQNHL------VGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVS 644
V +T + + N HL G+ PT KL+ L+ L + NK G S V
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL--KLKSLKRLTFTSNK--GGNAFSEVD 345
Query: 645 LTFMNHLNLSYNNLS 659
L + L+LS N LS
Sbjct: 346 LPSLEFLDLSRNGLS 360
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 106/403 (26%), Positives = 168/403 (41%), Gaps = 80/403 (19%)
Query: 54 LSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLC------NLRTLK 107
L LDL++N L+ P F ++ L L L N+ L L+ KLC +++ L
Sbjct: 173 LRKLDLSSNPLKEFSPGCFQTIGKLFAL-LLNNAQLNPHLTE---KLCWELSNTSIQNLS 228
Query: 108 LSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSF 167
L+ N + +GL + TN L +L+L +N L S YL +LRYL L N+
Sbjct: 229 LANNQLLATSESTFSGL-KWTN---LTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNI 284
Query: 168 VGSIPPSIGNLTFLKELYLS------SNQMNGFPE----SFGQLSAIEVLDLDENQWEGI 217
P S L+ L+ L L S + P SF L +E L++D+N
Sbjct: 285 QRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPST 344
Query: 218 ITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRN 277
+ T F L +LK +SL K ++ + N TF+ +
Sbjct: 345 KSNT-FTGLVSLKYLSLSKTFTSLQTLTNE----------TFVSLA-------------- 379
Query: 278 QTELTTLVLNN---ARISDTVPNWFWQLDLALDELDVGSNELSGRIPNS--LGFRFPGTV 332
+ L TL L ++I++ +W QL + LD+G NE+ ++ G R +
Sbjct: 380 HSPLLTLNLTKNHISKIANGTFSWLGQLRI----LDLGLNEIEQKLSGQEWRGLRNIFEI 435
Query: 333 DLSSNSFEGPLPLWSFNVTKLYLNNNSFS-GPIPRDFGQKIPFLTDLDISFNSLNGSVPK 391
LS N + L L+ +SF+ P + + L ++DIS P
Sbjct: 436 YLSYNKY-------------LQLSTSSFALVPSLQRLMLRRVALKNVDIS--------PS 474
Query: 392 SIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLS 434
L+ L L +SNNN++ L + +L ILD +N L+
Sbjct: 475 PFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 11/189 (5%)
Query: 331 TVDLSS---NSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNG 387
TVD S+ N +P ++ +L LNNN F+ +K+P L ++ S N +
Sbjct: 15 TVDCSNQKLNKIPEHIPQYT---AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD 71
Query: 388 SVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSV 447
+ + +++++N L +++ + SL L + +N ++ DS L SV
Sbjct: 72 IEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131
Query: 448 RFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIP-AWIGESMPSLSIL----RLR 502
R L L +N I+ P + + +L+L N + N AW+GE + I+ R +
Sbjct: 132 RLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQ 191
Query: 503 SNYFNGTIP 511
YF IP
Sbjct: 192 KPYFLKEIP 200
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 14/216 (6%)
Query: 102 NLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLE 161
N R L L NSI +D L LE L+L N + + L +L LE
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRH------LEILQLSKNLVRKIEVGAFNGLPSLNTLE 89
Query: 162 LWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPE-SFGQLSAIEVLDLDENQWEGIITE 220
L+DN + L+ L+EL+L +N + P +F ++ ++ LDL E + I+E
Sbjct: 90 LFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE 149
Query: 221 THFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTE 280
F L NL+ ++L N+ I N+++ +L +++ +L P + T
Sbjct: 150 AAFEGLVNLRYLNLGMC--NLKDIPNLTA----LVRLEELELSGNRLDLIRPGSFQGLTS 203
Query: 281 LTTLVLNNARISDTVPNWFWQLDLALDELDVGSNEL 316
L L L +A+++ N F L +L+EL++ N L
Sbjct: 204 LRKLWLMHAQVATIERNAFDDLK-SLEELNLSHNNL 238
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 99/216 (45%), Gaps = 14/216 (6%)
Query: 102 NLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLE 161
N R L L NSI +D L LE L+L N + + L +L LE
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRH------LEILQLSKNLVRKIEVGAFNGLPSLNTLE 89
Query: 162 LWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPE-SFGQLSAIEVLDLDENQWEGIITE 220
L+DN + L+ L+EL+L +N + P +F ++ ++ LDL E + I+E
Sbjct: 90 LFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISE 149
Query: 221 THFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTE 280
F L NL+ ++L N+ I N+++ +L +++ +L P + T
Sbjct: 150 AAFEGLVNLRYLNLGMC--NLKDIPNLTA----LVRLEELELSGNRLDLIRPGSFQGLTS 203
Query: 281 LTTLVLNNARISDTVPNWFWQLDLALDELDVGSNEL 316
L L L +A+++ N F L +L+EL++ N L
Sbjct: 204 LRKLWLMHAQVATIERNAFDDLK-SLEELNLSHNNL 238
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 8/186 (4%)
Query: 133 LEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMN 192
LE L+L N + + L NL LEL+DN + L+ LKEL+L +N +
Sbjct: 90 LEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149
Query: 193 GFPE-SFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHW 251
P +F ++ ++ LDL E + I+E F LSNL+ ++L N+ I N++
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC--NLREIPNLT--- 204
Query: 252 IPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDV 311
P KL + + L P + L L + ++I N F L +L E+++
Sbjct: 205 -PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQ-SLVEINL 262
Query: 312 GSNELS 317
N L+
Sbjct: 263 AHNNLT 268
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 28/232 (12%)
Query: 436 EIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG-NIPAWIGESMP 494
E+PD I + R L L N I S K+ ++ L L N + I A+ G +
Sbjct: 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG--LA 112
Query: 495 SLSILRLRSNYFNGTIP-PELCKLSALHILDLSHNNLSGFIPSCVGN----FSRMKIEPP 549
+L+ L L N TIP LS L L L +N + IPS N R+ +
Sbjct: 113 NLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGEL 170
Query: 550 DSVEY--EGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQ 607
+ Y EG+ + G + Y L + NL ++ + LT LI L L+LS
Sbjct: 171 KRLSYISEGAFE----GLSNLRYLNLAMCNLREIPN----------LTPLIKLDELDLSG 216
Query: 608 NHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 659
NHL P L L+ L + ++++ + +L + +NL++NNL+
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 106/434 (24%), Positives = 179/434 (41%), Gaps = 93/434 (21%)
Query: 257 LTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNEL 316
LTF+ + CQ+ ++ +L+TLVL P F + L
Sbjct: 56 LTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGN------PLIF-----------MAETSL 98
Query: 317 SGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSF-NVTKLYLNNNSFSG-PIPRDFGQKIPF 374
+G P SL F +S+ F +P+ + N+ LYL +N S P+DF +
Sbjct: 99 NG--PKSLKHLFLIQTGISNLEF---IPVHNLENLESLYLGSNHISSIKFPKDFPAR--N 151
Query: 375 LTDLDISFNSLNGSVPKSIGNLQQL--LTLVISNNNLSG-EIPQLWSNI----------- 420
L LD N+++ + + +L+Q L+L + NN+ G E+ S I
Sbjct: 152 LKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPN 211
Query: 421 -------------SSLYI---LDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPS 464
SL++ D+ + +S + + C +SV L L + S +
Sbjct: 212 LSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGL-CEMSVESLNLQEHRFSDISSTT 270
Query: 465 LKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILD 524
+ + + LDL L G +P+ + + + L L L N+F+ +LC++SA +
Sbjct: 271 FQCFTQLQELDLTATHLKG-LPSGM-KGLNLLKKLVLSVNHFD-----QLCQISAANFPS 323
Query: 525 LSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSN 584
L+H + G N ++ + +E G+LQ +DLS N
Sbjct: 324 LTHLYIRG-------NVKKLHL-GVGCLEKLGNLQT------------------LDLSHN 357
Query: 585 NLSGE--MPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPS- 641
++ ++L L HL TLNLS N +G + LE LDL+ +L + P S
Sbjct: 358 DIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSP 417
Query: 642 MVSLTFMNHLNLSY 655
+L F+ LNL+Y
Sbjct: 418 FQNLHFLQVLNLTY 431
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 142/596 (23%), Positives = 242/596 (40%), Gaps = 90/596 (15%)
Query: 67 DIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSE 126
+IPD N+ + L+ + N FL +R +L NL L L+R I+ D +
Sbjct: 23 EIPDTLP--NTTEFLEFSFN-FLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQ 79
Query: 127 CTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYL 186
L L L N L SL K+L++L L + NL L+ LYL
Sbjct: 80 ------LSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYL 133
Query: 187 SSNQMNG--FPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLI 244
SN ++ FP+ F + ++VLD N I E ++ +L++ + N+SL
Sbjct: 134 GSNHISSIKFPKDFPARN-LKVLDFQNNAIHYISRE----DMRSLEQ------AINLSLN 182
Query: 245 FNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRN----QTELTTLVLNNARISDTVPNWFW 300
FN ++ ++ +LG T ++ T +++ N + S T W
Sbjct: 183 FNGNN------------VKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLG 230
Query: 301 QLDLALDELDVGSNELSGRIP---NSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNN 357
+ +D+ D+ S L G SL + D+SS +F+ L ++T +L
Sbjct: 231 TFE-DIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG 289
Query: 358 NSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLW 417
+P + + L L +S N + S N L L I G + +L
Sbjct: 290 ------LPSGM-KGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIR-----GNVKKLH 337
Query: 418 ------SNISSLYILDMSNNTLSGEIPDSIGCLLSVR------FLILCNNHISGEVPPSL 465
+ +L LD+S+N +I S C L ++ L L +N G +
Sbjct: 338 LGVGCLEKLGNLQTLDLSHN----DIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAF 393
Query: 466 KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDL 525
K C ++ LDL +L N P +++ L +L L + + + L L L L+L
Sbjct: 394 KECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNL 453
Query: 526 SHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGT-------QYVFYSTLYLVNL 578
N +F I + ++ GSL+V++ + Q F+S L ++
Sbjct: 454 KGN-----------HFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHS-LGKMSH 501
Query: 579 MDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKL 634
+DLS N+L+ + L+ L + LNL+ N + P + L +++LS N L
Sbjct: 502 VDLSHNSLTCDSIDSLSHLKGI-YLNLAANSINIISPRLLPILSQQSTINLSHNPL 556
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 128/512 (25%), Positives = 198/512 (38%), Gaps = 85/512 (16%)
Query: 51 ITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFL-GGRLSRNLGKLCNLRTLKLS 109
+ L+ LDL + D F S + L L LTGN + S N K +L+ L L
Sbjct: 53 LMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPK--SLKHLFLI 110
Query: 110 RNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTG-----DLPNSLGYLKNLRYLELWD 164
+ IS +FI N LE L LG N ++ D P +NL+ L+ +
Sbjct: 111 QTGISN--LEFI----PVHNLENLESLYLGSNHISSIKFPKDFP-----ARNLKVLDFQN 159
Query: 165 NSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGI----ITE 220
N+ Y+S M ++ LS L+ + N +GI
Sbjct: 160 NAIH----------------YISREDMRSLEQAIN-LS----LNFNGNNVKGIELGAFDS 198
Query: 221 THFRNLSNLKEISLYKLSENISLIFN------ISSHWIPPFKLTFIKIRSCQLGPKFPTW 274
T F++L+ + + N+S+IFN S W+ TF I +
Sbjct: 199 TIFQSLN-------FGGTPNLSVIFNGLQNSTTQSLWLG----TFEDIDDEDISSAMLKG 247
Query: 275 LRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDL 334
L + + +L L R SD F Q L ELD+ + L G G + L
Sbjct: 248 LC-EMSVESLNLQEHRFSDISSTTF-QCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVL 305
Query: 335 SSNSFEGPLPLWSFN---VTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS--V 389
S N F+ + + N +T LY+ N + +K+ L LD+S N + S
Sbjct: 306 SVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCC 365
Query: 390 PKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDS-------IG 442
+ NL L TL +S+N G Q + L +LD++ L P S +
Sbjct: 366 SLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQ 425
Query: 443 CL-LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLS-GNIPAW-IGESMPSLSIL 499
L L+ FL N H+ +P ++ L+L N G I + +++ SL +L
Sbjct: 426 VLNLTYCFLDTSNQHLLAGLP-------VLRHLNLKGNHFQDGTITKTNLLQTVGSLEVL 478
Query: 500 RLRSNYFNGTIPPELCKLSALHILDLSHNNLS 531
L S L + +DLSHN+L+
Sbjct: 479 ILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLT 510
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 71/147 (48%), Gaps = 20/147 (13%)
Query: 153 YLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDEN 212
YL NL LEL DN P + NLT + EL LS N + + L +I+ LDL
Sbjct: 61 YLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTST 117
Query: 213 QWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLT---FIKIRSCQLGP 269
Q + T LSNL+ + L +++ I NIS P LT ++ I + Q+
Sbjct: 118 QITDV---TPLAGLSNLQVLYL-----DLNQITNIS----PLAGLTNLQYLSIGNAQVSD 165
Query: 270 KFPTWLRNQTELTTLVLNNARISDTVP 296
P L N ++LTTL ++ +ISD P
Sbjct: 166 LTP--LANLSKLTTLKADDNKISDISP 190
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 152 GYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPES-FGQLSAIEVLDLD 210
G N + L L DN P +L LKELYL SNQ+ P F L+ + VLDL
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 211 ENQWEGIITETHFRNLSNLKEI 232
NQ ++ F L +LKE+
Sbjct: 97 TNQLT-VLPSAVFDRLVHLKEL 117
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 133 LEKLELGFNQLTGDLP-NSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQM 191
L++L LG NQL G LP L L L+L N L LKEL++ N++
Sbjct: 66 LKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124
Query: 192 NGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY 235
P +L+ + L LD+NQ + I F LS+L L+
Sbjct: 125 TELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLF 167
Score = 32.7 bits (73), Expect = 0.78, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 570 YSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDL 629
+ +L + ++DL +N L+ RL+HL L + N L ++P I +L L L L
Sbjct: 84 FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLAL 142
Query: 630 SKNKLSGSIP 639
+N+L SIP
Sbjct: 143 DQNQLK-SIP 151
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 35/205 (17%)
Query: 42 SKIPHWLFNITR-LSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKL 100
S +P F R L+ L L++N L G F+ L L+QLDL+ N+ L L
Sbjct: 44 SYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGL 103
Query: 101 CNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYL 160
+L TL L R + ELG P L L+YL
Sbjct: 104 GHLHTLHLDRCGLQ----------------------ELG--------PGLFRGLAALQYL 133
Query: 161 ELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPE-SFGQLSAIEVLDLDENQWEGIIT 219
L DN+ + +L L L+L N++ PE +F L +++ L L +N +
Sbjct: 134 YLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
Query: 220 ETHFRNLSNLKEISLYKLSENISLI 244
FR+L L ++LY + N+S++
Sbjct: 194 HA-FRDLGRL--MTLYLFANNLSML 215
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 74/189 (39%), Gaps = 17/189 (8%)
Query: 485 IPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHN-NLSGFIPSC---VGN 540
+PA +S +L+IL L SN G L+ L LDLS N L P+ +G+
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGH 105
Query: 541 FSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSG------------ 588
+ ++ E L L QY++ L L D + +L
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP 165
Query: 589 EMPVELTRLIH-LGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTF 647
+P R +H L L L QNH+ P L L +L L N LS +V L
Sbjct: 166 SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRS 225
Query: 648 MNHLNLSYN 656
+ +L L+ N
Sbjct: 226 LQYLRLNDN 234
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 151 LGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLD 210
+ YL NL LEL DN P + NLT + EL LS N + G L +I+ LDL
Sbjct: 65 IQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNVSAIAG-LQSIKTLDLT 121
Query: 211 ENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLT---FIKIRSCQL 267
Q + T LSNL+ + L +++ I NIS P LT ++ I + Q+
Sbjct: 122 STQITDV---TPLAGLSNLQVLYL-----DLNQITNIS----PLAGLTNLQYLSIGNNQV 169
Query: 268 GPKFPTWLRNQTELTTLVLNNARISDTVP 296
P L N ++LTTL ++ +ISD P
Sbjct: 170 NDLTP--LANLSKLTTLRADDNKISDISP 196
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 35/205 (17%)
Query: 42 SKIPHWLFNITR-LSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKL 100
S +P F R L+ L L++N L F+ L L+QLDL+ N+ L L
Sbjct: 45 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104
Query: 101 CNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYL 160
L TL L R + ELG P L L+YL
Sbjct: 105 GRLHTLHLDRCGLQ----------------------ELG--------PGLFRGLAALQYL 134
Query: 161 ELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPE-SFGQLSAIEVLDLDENQWEGIIT 219
L DN+ + +L L L+L N+++ PE +F L +++ L L +N+ +
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 220 ETHFRNLSNLKEISLYKLSENISLI 244
FR+L L ++LY + N+S +
Sbjct: 195 HA-FRDLGRL--MTLYLFANNLSAL 216
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 63/160 (39%), Gaps = 24/160 (15%)
Query: 30 LQVLDLSNNG-FNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSF 88
L+ LDLS+N S P + RL +L L+ LQ P F L +LQ L L N+
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 89 --LGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSL-------------- 132
L R+LG NL L L N IS GL L
Sbjct: 142 QALPDDTFRDLG---NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198
Query: 133 ----LEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFV 168
L L L N L+ +L L+ L+YL L DN +V
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 349 NVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNN 408
N+T L+L+ N S R F + + L L + N + P + +L +L+TL + NN
Sbjct: 154 NLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 409 LSGEIPQLWSNISSLYILDMSNN 431
LS + + + +L L +++N
Sbjct: 213 LSALPTEALAPLRALQYLRLNDN 235
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 36/186 (19%)
Query: 33 LDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQ--GDIPDGFSSLNSLQQLDLTGNSFLG 90
LD SNN + ++T L +L L N L+ I + + + SLQQLD++ NS
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS--- 385
Query: 91 GRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNS 150
+S + G+ C+ + L L + N LT +
Sbjct: 386 -----------------VSYDEKKGD----------CSWTKSLLSLNMSSNILTDTIFRC 418
Query: 151 LGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPES-FGQLSAIEVLDL 209
L ++ L+L N + SIP + L L+EL ++SNQ+ P+ F +L++++ + L
Sbjct: 419 LP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475
Query: 210 DENQWE 215
N W+
Sbjct: 476 HTNPWD 481
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 33/174 (18%)
Query: 373 PFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLS--GEIPQLWSNISSLYILDMSN 430
PFL LD S N L +V ++ G+L +L TL++ N L +I ++ + + SL LD+S
Sbjct: 325 PFL-HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383
Query: 431 NTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG 490
N++S + C + L SL++ N L+ I +
Sbjct: 384 NSVSYDEKKG-DCSWTKSLL----------------------SLNMSSNILTDTIFRCLP 420
Query: 491 ESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRM 544
P + +L L SN +IP ++ KL AL L+++ N L +P G F R+
Sbjct: 421 ---PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPD--GIFDRL 467
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 85 GNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLT 144
N+ L + N G L L TL L N + E+S ++ + L++L++ N ++
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKS---LQQLDISQNSVS 387
Query: 145 GDLPN-SLGYLKNLRYLELWDNSFVGSI----PPSIGNLTFLKELYLSSNQMNGFPESFG 199
D + K+L L + N +I PP I K L L SN++ P+
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRI------KVLDLHSNKIKSIPKQVV 441
Query: 200 QLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY 235
+L A++ L++ NQ + + + F L++L++I L+
Sbjct: 442 KLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLH 476
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 35/205 (17%)
Query: 42 SKIPHWLFNITR-LSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKL 100
S +P F R L+ L L++N L F+ L L+QLDL+ N+ L L
Sbjct: 44 SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 103
Query: 101 CNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYL 160
L TL L R + ELG P L L+YL
Sbjct: 104 GRLHTLHLDRCGLQ----------------------ELG--------PGLFRGLAALQYL 133
Query: 161 ELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPE-SFGQLSAIEVLDLDENQWEGIIT 219
L DN+ + +L L L+L N+++ PE +F L +++ L L +N+ +
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 193
Query: 220 ETHFRNLSNLKEISLYKLSENISLI 244
FR+L L ++LY + N+S +
Sbjct: 194 HA-FRDLGRL--MTLYLFANNLSAL 215
Score = 32.3 bits (72), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 63/160 (39%), Gaps = 24/160 (15%)
Query: 30 LQVLDLSNNG-FNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSF 88
L+ LDLS+N S P + RL +L L+ LQ P F L +LQ L L N+
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 89 --LGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSL-------------- 132
L R+LG NL L L N IS GL L
Sbjct: 141 QALPDDTFRDLG---NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 197
Query: 133 ----LEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFV 168
L L L N L+ +L L+ L+YL L DN +V
Sbjct: 198 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 237
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 349 NVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNN 408
N+T L+L+ N S R F + + L L + N + P + +L +L+TL + NN
Sbjct: 153 NLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 211
Query: 409 LSGEIPQLWSNISSLYILDMSNN 431
LS + + + +L L +++N
Sbjct: 212 LSALPTEALAPLRALQYLRLNDN 234
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/303 (26%), Positives = 114/303 (37%), Gaps = 92/303 (30%)
Query: 22 FPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQL 81
F L S++ ++L + F+ TR+ LDL L G +P G +NSL++L
Sbjct: 247 FEGLCDMSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKL 305
Query: 82 DLTGNSF------------------LGGRL------SRNLGKLCNLRTLKLSRNSISGEV 117
L NSF + G + +R L KL NL+ L LS + I E
Sbjct: 306 VLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDI--EA 363
Query: 118 SDFIN-------------------------GLSECTNSSLLEKLELGFNQLTGDLPNS-- 150
SD N EC LE L++ F L P+S
Sbjct: 364 SDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQ---LELLDVAFTHLHVKAPHSPF 420
Query: 151 -----------------------LGYLKNLRYLELWDNSFV-GSIPPS-----IGNLTFL 181
L L++LR+L L NSF GSI + +G+L L
Sbjct: 421 QNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEIL 480
Query: 182 KELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENI 241
+ S N ++ ++F L + LDL N G + LS+LK + L S NI
Sbjct: 481 --ILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA----LSHLKGLYLNMASNNI 534
Query: 242 SLI 244
+I
Sbjct: 535 RII 537
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 85/344 (24%), Positives = 143/344 (41%), Gaps = 56/344 (16%)
Query: 328 FPGTVD--LSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSL 385
F T D L+S +FEG L +V + L + FS F + + +LD++ L
Sbjct: 234 FEDTDDQYLTSATFEG---LCDMSVESINLQKHRFSDLSSSTF-RCFTRVQELDLTAAHL 289
Query: 386 NGSVPKSIGNLQQLLTLVISNNNLSGEIPQL----WSNISSLYI------LDMSNNTLS- 434
NG +P I + L LV++ N+ ++ Q+ + ++ LYI LD+ L
Sbjct: 290 NG-LPSGIEGMNSLKKLVLNANSFD-QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEK 347
Query: 435 -----------GEIPDSIGC------LLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLG 477
+I S C L +++L L N G + K C ++ LD+
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 478 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSC 537
L P +++ L +L L + + L L DL H NL G
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQ-----DLRHLNLQG----- 457
Query: 538 VGNFSRMKIEPPDSVEYEGSLQVVLKGT-------QYVFYSTLYLVNLMDLSSNNLSGEM 590
+F I + ++ GSL++++ + Q F+ L VN +DLS N+L+G+
Sbjct: 458 -NSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG-LRNVNHLDLSHNSLTGDS 515
Query: 591 PVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKL 634
L+ L L LN++ N++ P + L ++LS N L
Sbjct: 516 MDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 37/199 (18%)
Query: 30 LQVLDLSNNGFNSKIPHWLF-NITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSF 88
L++LD++ + K PH F N+ L L+L+ L + L L+ L+L GNSF
Sbjct: 401 LELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSF 460
Query: 89 LGGRLSR-NLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDL 147
G +S+ NL ++ G + I LS C S+ ++ G
Sbjct: 461 QDGSISKTNLLQMV-------------GSLEILI--LSSCNLLSIDQQAFHG-------- 497
Query: 148 PNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYL--SSNQMNGFPES-FGQLSAI 204
L+N+ +L+L NS G S+ L+ LK LYL +SN + P LS
Sbjct: 498 ------LRNVNHLDLSHNSLTGD---SMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQ 548
Query: 205 EVLDLDENQWEGIITETHF 223
+++L N + + HF
Sbjct: 549 SIINLSHNPLDCTCSNIHF 567
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 91/338 (26%), Positives = 148/338 (43%), Gaps = 56/338 (16%)
Query: 333 DLSSNSFEG--PLPLWSFNVTKLYLNN------NSFSGPIPRDFGQKIPFLTDLDISFNS 384
D+S FEG + + S N+ K Y N + FSG L +LD++
Sbjct: 242 DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG------------LQELDLTATH 289
Query: 385 LNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCL 444
L +P + L L LV+S N SN SL L + NT E+ GCL
Sbjct: 290 L-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL--GTGCL 346
Query: 445 LSV---RFLILCNNHI--SGEVPPSLKNCSMMDSLDLGDNQ-LSGNIPAWIGESMPSLSI 498
++ R L L ++ I S L+N S + SL+L N+ LS A+ + P L +
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF--KECPQLEL 404
Query: 499 LRL---RSNYFNGTIPPELCKLSALHILDLSHN-------NLSGFIPSCV-----GN-FS 542
L L R + P + L L +L+LSH+ L +P+ GN F
Sbjct: 405 LDLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462
Query: 543 RMKIEPPDSVEYEGSLQVV------LKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTR 596
+ I+ +S++ G L+++ L +++L ++N +DLS N L+ L+
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522
Query: 597 LIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKL 634
L + LNL+ NH+ +P+ + L +++L +N L
Sbjct: 523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 118/471 (25%), Positives = 182/471 (38%), Gaps = 82/471 (17%)
Query: 257 LTFIKIRSCQLGPKFPTWLRNQTELTTLVLNN------ARISDTVPN-----WFWQLDLA 305
LTF+ + CQ+ ++Q L TLVL A + + P +F Q ++
Sbjct: 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS 118
Query: 306 ------------LDELDVGSNELSG-RIPNSLGFRFPGTVDLSSNSF-----EGPLPLWS 347
L+ L +GSN +S ++P +D +N+ E L
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178
Query: 348 FNVTKLYLNNNSFSGPIPRDFG----QKIPF--LTDLDISFNSLNGSVPKS--IGNLQQL 399
L LN N +G P F Q + F +L + F L S +S +G + +
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238
Query: 400 LTLVISNNNLSG--EIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHI 457
IS G E+ N+ Y ++S+NT C ++ L L H+
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFH--------CFSGLQELDLTATHL 290
Query: 458 SGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN---GTIPPEL 514
S E+P L S + L L N+ N+ + PSL+ L ++ N GT E
Sbjct: 291 S-ELPSGLVGLSTLKKLVLSANKFE-NLCQISASNFPSLTHLSIKGNTKRLELGTGCLE- 347
Query: 515 CKLSALHILDLSHNNLSGFIPSCVG----NFSRMK-----IEPPDSVEYE---------- 555
L L LDLSH+++ C N S ++ P S++ E
Sbjct: 348 -NLENLRELDLSHDDIE--TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLEL 404
Query: 556 ---GSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHL-V 611
++ +K Q F L+L+ +++LS + L L L LNL NH
Sbjct: 405 LDLAFTRLKVKDAQSPF-QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463
Query: 612 GKIPT--QIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSG 660
G I + L LE L LS LS + SL MNH++LS+N L+
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 132/536 (24%), Positives = 213/536 (39%), Gaps = 94/536 (17%)
Query: 154 LKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPES------FGQLSAIEVL 207
L NLR L+L + P + L L EL L G ++ F L A+ L
Sbjct: 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRL---YFCGLSDAVLKDGYFRNLKALTRL 128
Query: 208 DLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFK---LTFIKIRS 264
DL +NQ + F L++LK I S N IF + H + P + L+F + +
Sbjct: 129 DLSKNQIRSLYLHPSFGKLNSLKSID---FSSN--QIFLVCEHELEPLQGKTLSFFSLAA 183
Query: 265 CQLGPKFPT-WLRNQTELTTLVLNNARISDTVPNWFWQLDL------ALDELDVGSNELS 317
L + W + +VL I D N W +D+ A+ + S L+
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVL---EILDVSGNG-WTVDITGNFSNAISKSQAFSLILA 239
Query: 318 GRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTD 377
I + GF F D N+F G L +V L D F
Sbjct: 240 HHIMGA-GFGFHNIKDPDQNTFAG---LARSSVRHL-------------DLSHGFVF--- 279
Query: 378 LDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEI 437
SLN V +++ +L+ L ++ N ++ + + + +L +L++S N L
Sbjct: 280 ------SLNSRVFETLKDLK---VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Query: 438 PDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG-----NIPAWI--G 490
+ L V ++ L NHI+ + K + +LDL DN L+ +IP G
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390
Query: 491 ESMPSLSILRLRSNYF--------NGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFS 542
+ +L + L +N N I L ++ L IL L+ N S SC G+
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS----SCSGD-- 444
Query: 543 RMKIEPPDSVEY----EGSLQVVLKGT-QYVFYSTLYLVNLMDLSSNNLSGEMPVELTRL 597
+ E P S+E E LQ+ + + + L + ++ L+ N L+ P + L
Sbjct: 445 QTPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503
Query: 598 IHLGTLNLSQNHLV----GKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMN 649
L L+L+ N L +P LE LD+S+N+L P VSL+ ++
Sbjct: 504 TALRGLSLNSNRLTVLSHNDLPAN------LEILDISRNQLLAPNPDVFVSLSVLD 553
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 97/226 (42%), Gaps = 46/226 (20%)
Query: 30 LQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNS-- 87
LQVL+LS N + + +++ +DL N + F L LQ LDL N+
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 88 -----------FLGGRLSRNLGKLCNLRT--LKLSRNSISG-EVSDFI------------ 121
FL G L K+ NL + LS N + ++ F+
Sbjct: 376 TIHFIPSIPDIFLSGNKLVTLPKI-NLTANLIHLSENRLENLDILYFLLRVPHLQILILN 434
Query: 122 -NGLSECTNSSL------LEKLELGFNQLTGDLPNSLGY-----LKNLRYLELWDNSFVG 169
N S C+ LE+L LG N L L + L +L+ L L +++++
Sbjct: 435 QNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL-NHNYLN 493
Query: 170 SIPPSI-GNLTFLKELYLSSNQMNGFPESFGQLSA-IEVLDLDENQ 213
S+PP + +LT L+ L L+SN++ S L A +E+LD+ NQ
Sbjct: 494 SLPPGVFSHLTALRGLSLNSNRLTVL--SHNDLPANLEILDISRNQ 537
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 119/296 (40%), Gaps = 37/296 (12%)
Query: 366 RDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYI 425
+D P L +L+++ N ++ P + NL L TL + +N L +++ +S+L
Sbjct: 49 QDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108
Query: 426 LDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI 485
LD+S N I LL F L N + SL++GDN L I
Sbjct: 109 LDISEN--------KIVILLDYMFQDLYN----------------LKSLEVGDNDLV-YI 143
Query: 486 PAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMK 545
+ SL L L L L L +L L H N++ R+K
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203
Query: 546 IEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSN--NLSGEMPVELTRLIHLGTL 603
+ Y ++ + LY +NL LS NL+ + + L++L L
Sbjct: 204 VLEISHWPYLDTMTP----------NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253
Query: 604 NLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 659
NLS N + + + +L L+ + L +L+ P + L ++ LN+S N L+
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 114/266 (42%), Gaps = 27/266 (10%)
Query: 27 FTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG- 85
++L LD+S N + + ++ L SL++ NDL FS LNSL+QL L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 86 --NSFLGGRLSRNLGKLCNLRTLKLSRNSISG------------EVSD--FINGLS-ECT 128
S LS +L L LR L+ N+I E+S +++ ++ C
Sbjct: 163 NLTSIPTEALS-HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL 221
Query: 129 NSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSS 188
L L + LT ++ +L LR+L L N + L L+E+ L
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG 281
Query: 189 NQMNGF-PESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYK--LSENISLIF 245
Q+ P +F L+ + VL++ NQ + E+ F ++ NL+ + L L+ + L++
Sbjct: 282 GQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLACDCRLLW 340
Query: 246 NISSHWIPPFKLTFIKIRSCQLGPKF 271
W +L F + + P+F
Sbjct: 341 VFRRRW----RLNFNRQQPTCATPEF 362
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 76/208 (36%), Gaps = 33/208 (15%)
Query: 28 TSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNS 87
T ++LDL N + + L L+LN N + P F++
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNN------------- 78
Query: 88 FLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDL 147
L NLRTL L N + GLS T KL++ N++ L
Sbjct: 79 ------------LFNLRTLGLRSNRLKLIPLGVFTGLSNLT------KLDISENKIVILL 120
Query: 148 PNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFP-ESFGQLSAIEV 206
L NL+ LE+ DN V + L L++L L + P E+ L + V
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180
Query: 207 LDLDENQWEGIITETHFRNLSNLKEISL 234
L L I + F+ L LK + +
Sbjct: 181 LRLRHLNINA-IRDYSFKRLYRLKVLEI 207
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 85/198 (42%), Gaps = 15/198 (7%)
Query: 22 FPSLNFTSLQVLDLSNNG--FNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQ 79
F ++ SL+ LDLS NG F F T L LDL+ N + + F L L+
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLE 399
Query: 80 QLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELG 139
LD ++ L NL L +S + NGLS LE L++
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS------LEVLKMA 453
Query: 140 FNQLTGD-LPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSN---QMNGFP 195
N + LP+ L+NL +L+L P + +L+ L+ L +S N ++ FP
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 196 ESFGQLSAIEVLDLDENQ 213
+ L++++VLD N
Sbjct: 514 --YKCLNSLQVLDYSLNH 529
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 136/359 (37%), Gaps = 72/359 (20%)
Query: 13 CNLPIPPFHFPSLNFTSLQVLDLSNNGFN-SKIPHWLFNITRLSSLDLN--------TND 63
CNL I F L++ ++DL N N S I R+ N N
Sbjct: 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314
Query: 64 LQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGE----VSD 119
G P L SL++L T N GG + L +L L LSRN +S + SD
Sbjct: 315 KFGQFPT--LKLKSLKRLTFTSNK--GGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSD 369
Query: 120 FINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVG----SIPPSI 175
F ++ L+ L+L FN + N LG L+ L +L+ ++ S+ S+
Sbjct: 370 F--------GTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSL 420
Query: 176 GNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY 235
NL +L + ++ F F LS++EVL + N ++ F L N
Sbjct: 421 RNLIYLDISH--THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN------- 471
Query: 236 KLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVL--NNARISD 293
LTF+ + CQL PT + + L L + NN D
Sbjct: 472 ---------------------LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 510
Query: 294 TVP----NWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSF 348
T P N LD +L+ + + P+SL F ++L+ N F SF
Sbjct: 511 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF-----LNLTQNDFACTCEHQSF 564
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 125/517 (24%), Positives = 202/517 (39%), Gaps = 70/517 (13%)
Query: 25 LNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLT 84
+F LQVLDLS + +++ LS+L L N +Q FS L+SLQ+L +
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL-VA 107
Query: 85 GNSFLGGRLSRNLGKLCNLRTLKLSRNSI-SGEVSDFINGLSECTNSSLLEKLELGFNQL 143
+ L + +G L L+ L ++ N I S ++ ++ + L+ LE L+L N++
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN------LEHLDLSSNKI 161
Query: 144 TGDLPNSLGYLKNLRYLELWDNSF---VGSIPPSIGNLTFLKELYLSSN--QMNGFPESF 198
L L + L L + + I P L +L L +N +N
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221
Query: 199 GQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLT 258
L+ +EV L ++ E FRN NL++ + S + + + I F+L
Sbjct: 222 QGLAGLEVHRL-------VLGE--FRNEGNLEKF-------DKSALEGLCNLTIEEFRLA 265
Query: 259 FIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSG 318
++ + F L N + + + + R+ D N+ WQ L+ ++ +
Sbjct: 266 YLDYYLDDIIDLF-NCLTNVSSFSLVSVTIERVKDFSYNFGWQ---HLELVNCKFGQFPT 321
Query: 319 RIPNSLGFRFPGTVDLSSNSF-EGPLPLWSFNVTKLYLNNNSFSGPIPR-DFGQKIPFLT 376
SL R T + N+F E LP S L N SF G + DFG L
Sbjct: 322 LKLKSLK-RLTFTSNKGGNAFSEVDLP--SLEFLDLSRNGLSFKGCCSQSDFGTTS--LK 376
Query: 377 DLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGE 436
LD+SFN + +G L+QL L ++NL MS
Sbjct: 377 YLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLK----------------QMS------- 412
Query: 437 IPDSIGCLLSVRFLI---LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESM 493
LS+R LI + + H S ++ L + N N I +
Sbjct: 413 ---EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469
Query: 494 PSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNL 530
+L+ L L P LS+L +L++SHNN
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 133/562 (23%), Positives = 227/562 (40%), Gaps = 101/562 (17%)
Query: 33 LDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDG-FSSLNSLQQLDLTGNSFLGG 91
LDLS N + F+ L LDL+ ++Q I DG + SL+ L L LTGN
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPI--- 88
Query: 92 RLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSL 151
S LG L +L+ ++ E TN + LE + P +
Sbjct: 89 -QSLALGAFSGLSSLQ---KLVAVE-----------TNLASLE-----------NFP--I 120
Query: 152 GYLKNLRYLELWDN---SFVGSIPPSIGNLTFLKELYLSSNQMNGF-------------- 194
G+LK L+ L + N SF +P NLT L+ L LSSN++
Sbjct: 121 GHLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 195 ---------PESFGQLSAIEVLDLDE----NQWEGI-ITETHFRNLSNLKEISLYKLSE- 239
P +F Q A + + L + N ++ + + +T + L+ L E+ L E
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL-EVHRLVLGEF 237
Query: 240 ---------NISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNAR 290
+ S + + + I F+L ++ + F L N + + + + R
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIER 296
Query: 291 ISDTVPNWFWQ-LDL--------------ALDELDVGSNELSGRIPNSLGFRFPGTVDLS 335
+ D N+ WQ L+L +L L SN+ G + + +DLS
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNK-GGNAFSEVDLPSLEFLDLS 355
Query: 336 SN--SFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFG-QKIPFLTDLDISFNSLNGSVPKS 392
N SF+G F T L + SF+G I + L LD ++L S
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 415
Query: 393 IG-NLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGE-IPDSIGCLLSVRFL 450
+ +L+ L+ L IS+ + +++ +SSL +L M+ N+ +PD L ++ FL
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 451 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 510
L + P + + S + L++ N ++ + + + SL +L N+ +
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 511 PPELCKL-SALHILDLSHNNLS 531
EL S+L L+L+ N+ +
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFA 556
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 132 LLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQM 191
L +L L N LT +LP + L NLR L+L N S+P +G+ LK Y N +
Sbjct: 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMV 305
Query: 192 NGFPESFGQLSAIEVLDLD----ENQWEGIITE 220
P FG L ++ L ++ E Q+ I+TE
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 113 ISGEVSDFINGLSECTNSSLLEKLELGFNQLT--GDLPNSLGYLKNLRYL-ELWD----- 164
++ ++ F NG E N +LL+ +L + D+ N + K+ +Y +LW
Sbjct: 174 LTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLS 232
Query: 165 NSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITE 220
N + +I +I FL LYL+ N + P LS + VLDL N+ + E
Sbjct: 233 NLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAE 288
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 2/115 (1%)
Query: 399 LLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHIS 458
LT + N N E+P N+S+L +LD+S+N L+ +P +G +++ +N ++
Sbjct: 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 459 GEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE 513
+P N + L + N L + E + I LR N +P E
Sbjct: 307 T-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE 360
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 5/45 (11%)
Query: 505 YFNG----TIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMK 545
Y NG +P E+ LS L +LDLSHN L+ +P+ +G+ ++K
Sbjct: 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 364 IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSL 423
IPRD +T+L + N VPK + N + L + +SNN +S Q +SN++ L
Sbjct: 29 IPRD-------VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 424 YILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL 481
L +S N L P + L S+R L L N IS + + S + L +G N L
Sbjct: 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 36.2 bits (82), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 3 RSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTN 62
R + EL+L + P N+ L ++DLSNN ++ N+T+L +L L+ N
Sbjct: 31 RDVTELYLDGNQFTLVPKELS--NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 63 DLQGDIPDGFSSLNSLQQLDLTGN 86
L+ P F L SL+ L L GN
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGN 112
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 15/198 (7%)
Query: 22 FPSLNFTSLQVLDLSNNG--FNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQ 79
F ++ SL+ LDLS NG F F L LDL+ N + + F L L+
Sbjct: 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLE 423
Query: 80 QLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELG 139
LD ++ L NL L +S + NGLS LE L++
Sbjct: 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS------LEVLKMA 477
Query: 140 FNQLTGD-LPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSN---QMNGFP 195
N + LP+ L+NL +L+L P + +L+ L+ L +S N ++ FP
Sbjct: 478 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 537
Query: 196 ESFGQLSAIEVLDLDENQ 213
+ L++++VLD N
Sbjct: 538 --YKCLNSLQVLDYSLNH 553
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 125/517 (24%), Positives = 202/517 (39%), Gaps = 70/517 (13%)
Query: 25 LNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLT 84
+F LQVLDLS + +++ LS+L L N +Q FS L+SLQ+L +
Sbjct: 73 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL-VA 131
Query: 85 GNSFLGGRLSRNLGKLCNLRTLKLSRNSI-SGEVSDFINGLSECTNSSLLEKLELGFNQL 143
+ L + +G L L+ L ++ N I S ++ ++ + L+ LE L+L N++
Sbjct: 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN------LEHLDLSSNKI 185
Query: 144 TGDLPNSLGYLKNLRYLELWDNSF---VGSIPPSIGNLTFLKELYLSSN--QMNGFPESF 198
L L + L L + + I P L +L L +N +N
Sbjct: 186 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 245
Query: 199 GQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLT 258
L+ +EV L ++ E FRN NL++ + S + + + I F+L
Sbjct: 246 QGLAGLEVHRL-------VLGE--FRNEGNLEKF-------DKSALEGLCNLTIEEFRLA 289
Query: 259 FIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSG 318
++ + F L N + + + + R+ D N+ WQ L+ ++ +
Sbjct: 290 YLDYYLDGIIDLF-NCLTNVSSFSLVSVTIERVKDFSYNFGWQ---HLELVNCKFGQFPT 345
Query: 319 RIPNSLGFRFPGTVDLSSNSF-EGPLPLWSFNVTKLYLNNNSFSGPIPR-DFGQKIPFLT 376
SL R T + N+F E LP S L N SF G + DFG L
Sbjct: 346 LKLKSLK-RLTFTSNKGGNAFSEVDLP--SLEFLDLSRNGLSFKGCCSQSDFGTIS--LK 400
Query: 377 DLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGE 436
LD+SFN + +G L+QL L ++NL MS
Sbjct: 401 YLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLK----------------QMS------- 436
Query: 437 IPDSIGCLLSVRFLI---LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESM 493
LS+R LI + + H S ++ L + N N I +
Sbjct: 437 ---EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 493
Query: 494 PSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNL 530
+L+ L L P LS+L +L++SHNN
Sbjct: 494 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 134/547 (24%), Positives = 215/547 (39%), Gaps = 98/547 (17%)
Query: 33 LDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGR 92
LDLS N + F+ L LDL+ ++Q + SL+ L L LTGN
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI---- 112
Query: 93 LSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLG 152
S LG L +L+ ++ E TN + LE +G
Sbjct: 113 QSLALGAFSGLSSLQ---KLVAVE-----------TNLASLENF-------------PIG 145
Query: 153 YLKNLRYLELWDN---SFVGSIPPSIGNLTFLKELYLSSNQMNGF--------------- 194
+LK L+ L + N SF +P NLT L+ L LSSN++
Sbjct: 146 HLKTLKELNVAHNLIQSF--KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203
Query: 195 --------PESFGQLSAIEVLDLDE----NQWEGI-ITETHFRNLSNLKEISLYKLSE-- 239
P +F Q A + + L + N ++ + + +T + L+ L E+ L E
Sbjct: 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL-EVHRLVLGEFR 262
Query: 240 --------NISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARI 291
+ S + + + I F+L ++ + F L N + + + + R+
Sbjct: 263 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLF-NCLTNVSSFSLVSVTIERV 321
Query: 292 SDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSF-EGPLPLWSFNV 350
D N+ WQ L+ ++ + SL R T + N+F E LP S
Sbjct: 322 KDFSYNFGWQ---HLELVNCKFGQFPTLKLKSLK-RLTFTSNKGGNAFSEVDLP--SLEF 375
Query: 351 TKLYLNNNSFSGPIPR-DFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNL 409
L N SF G + DFG L LD+SFN + +G L+QL L ++NL
Sbjct: 376 LDLSRNGLSFKGCCSQSDFG--TISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNL 432
Query: 410 SGEIP-QLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPP----S 464
++ ++ +L LD+S+ L S+ L + N P
Sbjct: 433 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492
Query: 465 LKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRL-RSNYFNGTIPPELCKLSALHIL 523
L+N + LDL QL P S+ SL +L + +N+F+ P C L++L +L
Sbjct: 493 LRNLTF---LDLSQCQLEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKC-LNSLQVL 547
Query: 524 DLSHNNL 530
D S N++
Sbjct: 548 DYSLNHI 554
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 6/106 (5%)
Query: 133 LEKLELGFNQLTGDLPNSL-GYLKNLRYLELWDNSFVGSIPPSI-GNLTFLKELYLSSNQ 190
L +L LG N+L LPN + L +L YL L N S+P + LT LKEL L++NQ
Sbjct: 54 LTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKELALNTNQ 111
Query: 191 MNGFPES-FGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY 235
+ P+ F +L+ ++ L L +NQ + + + F L++L+ I L+
Sbjct: 112 LQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLH 156
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 73/161 (45%), Gaps = 34/161 (21%)
Query: 57 LDLNTNDLQGDIPDG-FSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISG 115
LDL TN L+ +P+G F L SL QL L GN L + KL +L L LS N +
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 116 EVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSI 175
+ + L++ L++L L NQL LP+ +
Sbjct: 91 LPNGVFDKLTQ------LKELALNTNQLQ-SLPDGV-----------------------F 120
Query: 176 GNLTFLKELYLSSNQMNGFPES-FGQLSAIEVLDLDENQWE 215
LT LK+L L NQ+ P+ F +L++++ + L +N W+
Sbjct: 121 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 26 NFTSLQVLDLSNNGFNSKIPHWLFN-ITRLSSLDLNTNDLQGDIPDG-FSSLNSLQQLDL 83
TSL L+LS N S +P+ +F+ +T+L L LNTN LQ +PDG F L L+ L L
Sbjct: 74 KLTSLTYLNLSTNQLQS-LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRL 131
Query: 84 TGNSF 88
N
Sbjct: 132 YQNQL 136
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 18/188 (9%)
Query: 376 TDLDISFNSLNGSVPKSI-GNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLS 434
T LD+ NSL S+P + L L L + N L +++ ++SL L++S N L
Sbjct: 31 TYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 435 GEIPDSI-GCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESM 493
+P+ + L ++ L L N + + + L L NQL ++P + + +
Sbjct: 90 -SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRL 147
Query: 494 PSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVE 553
SL + L N ++ T P + L N SG + + G+ + PDS +
Sbjct: 148 TSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGSVA------PDSAK 194
Query: 554 YEGSLQVV 561
GS + V
Sbjct: 195 CSGSGKPV 202
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 97/212 (45%), Gaps = 28/212 (13%)
Query: 2 LRSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITR-LSSLDLN 60
LR L +L++ +L P + PS SL L + +N K+P +F+ R ++ +++
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLPS----SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMG 155
Query: 61 TNDLQ--GDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISG-EV 117
N L+ G P F L L L ++ G + ++L + N L L N I E+
Sbjct: 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG--IPKDLPETLN--ELHLDHNKIQAIEL 210
Query: 118 SDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGN 177
D + S L +L LG NQ+ SL +L LR L L DN+ + +P + +
Sbjct: 211 EDLLR-------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL-DNNKLSRVPAGLPD 262
Query: 178 LTFLKELYLSSNQM-----NGF-PESFGQLSA 203
L L+ +YL +N + N F P FG A
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 18/206 (8%)
Query: 32 VLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGG 91
+LDL NN + + L +L L N + FS L LQ+L ++ N +
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-- 115
Query: 92 RLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQL--TGDLPN 149
+ NL +L L++ N I +GL + +E+G N L +G P
Sbjct: 116 EIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRN------MNCIEMGGNPLENSGFEPG 167
Query: 150 SLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFP-ESFGQLSAIEVLD 208
+ LK L YL + + G IP + L EL+L N++ E + S + L
Sbjct: 168 AFDGLK-LNYLRISEAKLTG-IPKDLPET--LNELHLDHNKIQAIELEDLLRYSKLYRLG 223
Query: 209 LDENQWEGIITETHFRNLSNLKEISL 234
L NQ +I L L+E+ L
Sbjct: 224 LGHNQIR-MIENGSLSFLPTLRELHL 248
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 30/139 (21%)
Query: 303 DLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSG 362
L LD ++ ++ G +P GT+DLS N + LPL
Sbjct: 59 QLNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL----------------- 94
Query: 363 PIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISS 422
GQ +P LT LD+SFN L ++ L +L L + N L P L +
Sbjct: 95 -----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 423 LYILDMSNNTLSGEIPDSI 441
L L ++NN L+ E+P +
Sbjct: 150 LEKLSLANNQLT-ELPAGL 167
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 58/139 (41%), Gaps = 30/139 (21%)
Query: 303 DLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSG 362
L LD ++ ++ G +P GT+DLS N + LPL
Sbjct: 59 QLNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL----------------- 94
Query: 363 PIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISS 422
GQ +P LT LD+SFN L ++ L +L L + N L P L +
Sbjct: 95 -----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 423 LYILDMSNNTLSGEIPDSI 441
L L ++NN L+ E+P +
Sbjct: 150 LEKLSLANNQLT-ELPAGL 167
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 12/139 (8%)
Query: 97 LGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSL-GYLK 155
L +L NL L L+ N + + + L+ L++L L NQL LP+ + L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTN------LKELVLVENQLQS-LPDGVFDKLT 133
Query: 156 NLRYLELWDNSFVGSIPPSI-GNLTFLKELYLSSNQMNGFPES-FGQLSAIEVLDLDENQ 213
NL YL L+ N S+P + LT L L L +NQ+ PE F +L+ ++ L L++NQ
Sbjct: 134 NLTYLYLYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ 192
Query: 214 WEGIITETHFRNLSNLKEI 232
+ + + F L++L I
Sbjct: 193 LKS-VPDGVFDRLTSLTHI 210
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 27 FTSLQVLDLSNNGFNSKIPHWLFN-ITRLSSLDLNTNDLQGDIPDG-FSSLNSLQQLDLT 84
T+L LDL NN S +P +F+ +T+L L LN N L+ +PDG F L SL + L
Sbjct: 156 LTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKS-VPDGVFDRLTSLTHIWLL 213
Query: 85 GN 86
N
Sbjct: 214 NN 215
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 96/209 (45%), Gaps = 33/209 (15%)
Query: 28 TSLQVLDLSNNGFNSKIPHWLFNI---TRLSSLDLNTNDLQG--------DIPDGFS--- 73
TS+ LDLS NGF + F+ T++ SL L+ + G PD F+
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 74 -SLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSL 132
+ ++ DL+ + L +L L L++N I+ + GL+
Sbjct: 272 LEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH------ 324
Query: 133 LEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTF-----LKELYLS 187
L KL L N L G + + + +NL LE+ D S+ + ++G+ +F LKEL L
Sbjct: 325 LLKLNLSQNFL-GSIDSRM--FENLDKLEVLDLSY--NHIRALGDQSFLGLPNLKELALD 379
Query: 188 SNQMNGFPES-FGQLSAIEVLDLDENQWE 215
+NQ+ P+ F +L++++ + L N W+
Sbjct: 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 26 NFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDG-FSSLNSLQQLDLT 84
N L+VLDLS N + + L L L+TN L+ +PDG F L SLQ++ L
Sbjct: 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLH 403
Query: 85 GN 86
N
Sbjct: 404 TN 405
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 597 LIHLGTLNLSQNHLVGKIPTQIGK-LEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSY 655
L HL LNLSQN L G I +++ + L+ LE LDLS N + S + L + L L
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT 380
Query: 656 NNL 658
N L
Sbjct: 381 NQL 383
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 12/142 (8%)
Query: 97 LGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSL-GYLK 155
L +L NL L L+ N + + + L+ L++L L NQL LP+ + L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTN------LKELVLVENQLQS-LPDGVFDKLT 133
Query: 156 NLRYLELWDNSFVGSIPPSI-GNLTFLKELYLSSNQMNGFPES-FGQLSAIEVLDLDENQ 213
NL YL L N S+P + LT L EL LS NQ+ PE F +L+ ++ L L +NQ
Sbjct: 134 NLTYLNLAHNQL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192
Query: 214 WEGIITETHFRNLSNLKEISLY 235
+ + + F L++L+ I L+
Sbjct: 193 LKS-VPDGVFDRLTSLQYIWLH 213
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 596 RLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMV-SLTFMNHLNLS 654
+L +L L L +N L KL L L+L+ N+L S+P + LT + L+LS
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLS 165
Query: 655 YNNLSGEIPK--VNQFQSLKDPSIYEGNLALCGDPLPERCSEI 695
YN L +P+ ++ LKD +Y+ L D + +R + +
Sbjct: 166 YNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 207
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 349 NVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSI-GNLQQLLTLVISNN 407
N+T L L +N +P+ K+ LT+LD+S+N L S+P+ + L QL L + N
Sbjct: 134 NLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN 191
Query: 408 NLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLI-LCNNH------ISGE 460
L ++ ++SL + + +N P +R+L N H +G
Sbjct: 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRNSAGS 244
Query: 461 VPPSLKNCS 469
V P CS
Sbjct: 245 VAPDSAKCS 253
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 10/105 (9%)
Query: 91 GRLSRN--LGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLP 148
GR+S + G+L +L L+L RN ++G + G +S +++L+LG N++ ++
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG------ASHIQELQLGENKIK-EIS 94
Query: 149 NSLGY-LKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMN 192
N + L L+ L L+DN +P S +L L L L+SN N
Sbjct: 95 NKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 133 LEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMN 192
L KLEL NQLTG PN+ +++ L+L +N L LK L L NQ++
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115
Query: 193 G-FPESFGQLSAIEVLDLDEN 212
P SF L+++ L+L N
Sbjct: 116 CVMPGSFEHLNSLTSLNLASN 136
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 569 FYSTLYLVN---LMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLE 625
++T L+N L +SS+ L G +P HL L L +N L G P ++
Sbjct: 29 LHTTELLLNDNELGRISSDGLFGRLP-------HLVKLELKRNQLTGIEPNAFEGASHIQ 81
Query: 626 SLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIP 663
L L +NK+ + L + LNL N +S +P
Sbjct: 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 28 TSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNS 87
+ +Q L L N + +L +L+L N + +P F LNSL L+L N
Sbjct: 78 SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137
Query: 88 F 88
F
Sbjct: 138 F 138
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 304 LALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGP 363
L LD ++ ++ G +P GT+DLS N + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 364 IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSL 423
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 424 YILDMSNNTLSGEIPDSI 441
L ++NN L+ E+P +
Sbjct: 151 EKLSLANNQLT-ELPAGL 167
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 304 LALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGP 363
L LD ++ ++ G +P GT+DLS N + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 364 IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSL 423
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 424 YILDMSNNTLSGEIPDSI 441
L ++NN L+ E+P +
Sbjct: 151 EKLSLANNQLT-ELPAGL 167
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 304 LALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGP 363
L LD ++ ++ G +P GT+DLS N + LPL
Sbjct: 61 LNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 95
Query: 364 IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSL 423
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 96 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 424 YILDMSNNTLSGEIPDSI 441
L ++NN L+ E+P +
Sbjct: 152 EKLSLANNNLT-ELPAGL 168
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%)
Query: 509 TIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYV 568
+PP+L K + IL LS N L F + + ++R+ D E T+
Sbjct: 25 ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRCEL----------TKLQ 72
Query: 569 FYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLD 628
TL ++ +DLS N L +P+ L L L++S N L + L L+ L
Sbjct: 73 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 131
Query: 629 LSKNKLSGSIPPSMVSLT-FMNHLNLSYNNLSGEIP 663
L N+L ++PP +++ T + L+L+ NNL+ E+P
Sbjct: 132 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELP 165
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 346 WSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSI-GNLQQLLTLVI 404
++ + KLY+ N+ P F Q +P LT L + N L S+P+ I N +L TL +
Sbjct: 97 YAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSM 154
Query: 405 SNNNLSGEIPQLWSNISSLYILDMSNNTLS 434
SNNNL + +SL L +S+N L+
Sbjct: 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLT 184
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 72/164 (43%), Gaps = 26/164 (15%)
Query: 375 LTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLS 434
+ L + FN++ P N+ L LV+ N+LS ++ N L L MSNN L
Sbjct: 101 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 160
Query: 435 GEIPDSIGCLLSVRFLILCNN---HISGEVPPSLKNCSMMDSLDLGDNQLSG-NIPAWIG 490
D+ S++ L L +N H+ + PSL + ++ N LS IP +
Sbjct: 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA------NVSYNLLSTLAIPIAVE 214
Query: 491 E---SMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLS 531
E S S++++R G + EL IL L HNNL+
Sbjct: 215 ELDASHNSINVVR-------GPVNVELT------ILKLQHNNLT 245
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 17 IPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLF-NITRLSSLDLNTNDLQGDIPDGFSSL 75
+PP F N L VL L N +S +P +F N +L++L ++ N+L+ D F +
Sbjct: 114 LPPHVFQ--NVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 170
Query: 76 NSLQQLDLTGNSFLGGRLS 94
SLQ L L+ N LS
Sbjct: 171 TSLQNLQLSSNRLTHVDLS 189
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 373 PFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSN-ISSLYILDMSNN 431
P L ++D+S+N L + +Q+L L ISNN L L+ I +L +LD+S+N
Sbjct: 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHN 311
Query: 432 TL 433
L
Sbjct: 312 HL 313
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 304 LALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGP 363
L LD ++ ++ G +P GT+DLS N + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 364 IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSL 423
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 424 YILDMSNNTLSGEIPDSI 441
L ++NN L+ E+P +
Sbjct: 151 EKLSLANNNLT-ELPAGL 167
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%)
Query: 509 TIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYV 568
+PP+L K + IL LS N L F + + ++R+ D E T+
Sbjct: 24 ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRCEL----------TKLQ 71
Query: 569 FYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLD 628
TL ++ +DLS N L +P+ L L L++S N L + L L+ L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 629 LSKNKLSGSIPPSMVSLT-FMNHLNLSYNNLSGEIP 663
L N+L ++PP +++ T + L+L+ NNL+ E+P
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELP 164
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 304 LALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGP 363
L LD ++ ++ G +P GT+DLS N + LPL
Sbjct: 60 LNLDRCELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 364 IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSL 423
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 424 YILDMSNNTLSGEIPDSI 441
L ++NN L+ E+P +
Sbjct: 151 EKLSLANNDLT-ELPAGL 167
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 304 LALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGP 363
L LD ++ ++ G +P GT+DLS N + LPL
Sbjct: 60 LNLDRAELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 364 IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSL 423
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 424 YILDMSNNTLSGEIPDSI 441
L ++NN L+ E+P +
Sbjct: 151 EKLSLANNNLT-ELPAGL 167
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%)
Query: 509 TIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYV 568
+PP+L K + IL LS N L F + + ++R+ D E T+
Sbjct: 24 ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL----------TKLQ 71
Query: 569 FYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLD 628
TL ++ +DLS N L +P+ L L L++S N L + L L+ L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 629 LSKNKLSGSIPPSMVSLT-FMNHLNLSYNNLSGEIP 663
L N+L ++PP +++ T + L+L+ NNL+ E+P
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELP 164
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 304 LALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGP 363
L LD ++ ++ G +P GT+DLS N + LPL
Sbjct: 60 LNLDRAELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 364 IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSL 423
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 424 YILDMSNNTLSGEIPDSI 441
L ++NN L+ E+P +
Sbjct: 151 EKLSLANNNLT-ELPAGL 167
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%)
Query: 509 TIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYV 568
+PP+L K + IL LS N L F + + ++R+ D E T+
Sbjct: 24 ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL----------TKLQ 71
Query: 569 FYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLD 628
TL ++ +DLS N L +P+ L L L++S N L + L L+ L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 629 LSKNKLSGSIPPSMVSLT-FMNHLNLSYNNLSGEIP 663
L N+L ++PP +++ T + L+L+ NNL+ E+P
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELP 164
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 58/138 (42%), Gaps = 30/138 (21%)
Query: 304 LALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGP 363
L LD ++ ++ G +P GT+DLS N + LPL
Sbjct: 60 LNLDRAELTKLQVDGTLP------VLGTLDLSHNQLQS-LPL------------------ 94
Query: 364 IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSL 423
GQ +P LT LD+SFN L ++ L +L L + N L P L + L
Sbjct: 95 ----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 424 YILDMSNNTLSGEIPDSI 441
L ++NN L+ E+P +
Sbjct: 151 EKLSLANNNLT-ELPAGL 167
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 74/156 (47%), Gaps = 16/156 (10%)
Query: 509 TIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYV 568
+PP+L K + IL LS N L F + + ++R+ D E T+
Sbjct: 24 ALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL----------TKLQ 71
Query: 569 FYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLD 628
TL ++ +DLS N L +P+ L L L++S N L + L L+ L
Sbjct: 72 VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 629 LSKNKLSGSIPPSMVSLT-FMNHLNLSYNNLSGEIP 663
L N+L ++PP +++ T + L+L+ NNL+ E+P
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELP 164
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 346 WSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSI-GNLQQLLTLVI 404
++ + KLY+ N+ P F Q +P LT L + N L S+P+ I N +L TL +
Sbjct: 91 YAHTIQKLYMGFNAIRYLPPHVF-QNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSM 148
Query: 405 SNNNLSGEIPQLWSNISSLYILDMSNNTLS 434
SNNNL + +SL L +S+N L+
Sbjct: 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLT 178
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 125/300 (41%), Gaps = 61/300 (20%)
Query: 375 LTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLS 434
+ L + FN++ P N+ L LV+ N+LS ++ N L L MSNN L
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154
Query: 435 GEIPDSIGCLLSVRFLILCNN---HISGEVPPSLKNCSMMDSLDLGDNQLSG-NIPAWIG 490
D+ S++ L L +N H+ + PSL + ++ N LS IP +
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA------NVSYNLLSTLAIPIAVE 208
Query: 491 E---SMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIE 547
E S S++++R G + EL IL L HNNL+ + + N+
Sbjct: 209 ELDASHNSINVVR-------GPVNVELT------ILKLQHNNLTD--TAWLLNY------ 247
Query: 548 PPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLM----DLSSNNLSGE-MPVELTRLIHLGT 602
P VE + S + K + F L L L + NL G+ +P L
Sbjct: 248 -PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT-------LKV 299
Query: 603 LNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNH-----LNLSYNN 657
L+LS NHL+ Q + + LE+L L N S+V+L H L LS+N+
Sbjct: 300 LDLSHNHLLHVERNQ-PQFDRLENLYLDHN--------SIVTLKLSTHHTLKNLTLSHND 350
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 17 IPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLF-NITRLSSLDLNTNDLQGDIPDGFSSL 75
+PP F N L VL L N +S +P +F N +L++L ++ N+L+ D F +
Sbjct: 108 LPPHVFQ--NVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQAT 164
Query: 76 NSLQQLDLTGNSFLGGRLS 94
SLQ L L+ N LS
Sbjct: 165 TSLQNLQLSSNRLTHVDLS 183
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 373 PFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNT 432
P L ++D+S+N L + +Q+L L ISNN L + I +L +LD+S+N
Sbjct: 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH 306
Query: 433 L 433
L
Sbjct: 307 L 307
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 92/243 (37%), Gaps = 34/243 (13%)
Query: 135 KLELGFNQLTGDLPNSLGYLKNLRYLELWDN--SFVGSIPPSIGNLTFLKELYLSSNQMN 192
+LEL N+L L L L L N SF G S T LK L LS N +
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 193 GFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISL--IFN---- 246
+F L +E LD + + + + F +L NL + + ++ IFN
Sbjct: 92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 247 ----------ISSHWIPPF-----KLTFIKIRSCQLGPKFPTWLRNQTELTTLVL--NNA 289
+++P LTF+ + CQL PT + + L L + NN
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 290 RISDTVP----NWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPL 345
DT P N LD +L+ + + P+SL F ++L+ N F
Sbjct: 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF-----LNLTQNDFACTCEH 266
Query: 346 WSF 348
SF
Sbjct: 267 QSF 269
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 15/192 (7%)
Query: 28 TSLQVLDLSNNG--FNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG 85
T L L LS+NG F F T L LDL+ N + + F L L+ LD
Sbjct: 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQH 110
Query: 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTG 145
++ L NL L +S + NGLS LE L++ N
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS------LEVLKMAGNSFQE 164
Query: 146 D-LPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSN---QMNGFPESFGQL 201
+ LP+ L+NL +L+L P + +L+ L+ L +S N ++ FP + L
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YKCL 222
Query: 202 SAIEVLDLDENQ 213
++++VLD N
Sbjct: 223 NSLQVLDYSLNH 234
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 14/211 (6%)
Query: 451 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN--YFNG 508
I CN+ VP + S L+L N+L +P + + + L+ L L SN F G
Sbjct: 12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 509 TIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYV 568
++L LDLS N + + NF + +E + ++++ S + + +++
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNG----VITMSSNF--LGLEQLEHLDFQHS--NLKQMSEFS 120
Query: 569 FYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGK-IPTQIGKLEWLESL 627
+ +L + +D+S + L L L ++ N +P +L L L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
Query: 628 DLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 658
DLS+ +L P + SL+ + LN+S+NN
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.8 bits (81), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 12/158 (7%)
Query: 370 QKIPFLTDL-DISFNSLNG----SVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLY 424
Q +P T L D+S N+L+ P + NL LL +S+N+L+ + + + +L
Sbjct: 35 QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLL---LSHNHLNFISSEAFVPVPNLR 91
Query: 425 ILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGN 484
LD+S+N L L ++ L+L NNHI + ++ + + L L NQ+S
Sbjct: 92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-R 150
Query: 485 IPAWI---GESMPSLSILRLRSNYFNGTIPPELCKLSA 519
P + G +P L +L L SN +L KL A
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA 188
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 67 DIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSE 126
++P S +L LDL+ N+ R +L NL +L LS N ++ S+ +
Sbjct: 32 NVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 127 CTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYL 186
L L+L N L L+ L L L++N V + ++ L++LYL
Sbjct: 90 ------LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143
Query: 187 SSNQMNGFPESF----GQLSAIEVLDLDENQWEGI 217
S NQ++ FP +L + +LDL N+ + +
Sbjct: 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 47/192 (24%)
Query: 28 TSLQVLDLSNNGFNSKIPHWLFNI---TRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLT 84
TS+ LDLS NGF + F+ T++ SL L+ + G SS D
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG------SSFGHTNFKDPD 265
Query: 85 GNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLT 144
+F G S ++T LS++ I + + ++ LE+L L N++
Sbjct: 266 NFTFKGLEAS-------GVKTCDLSKSKIFALLKSVFSHFTD------LEQLTLAQNEIN 312
Query: 145 GDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPES-FGQLSA 203
++ DN+F G LT LKEL L +NQ+ P+ F +L++
Sbjct: 313 ----------------KIDDNAFWG--------LTHLKELALDTNQLKSVPDGIFDRLTS 348
Query: 204 IEVLDLDENQWE 215
++ + L N W+
Sbjct: 349 LQKIWLHTNPWD 360
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 26 NFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDG-FSSLNSLQQLDLT 84
+FT L+ L L+ N N + + +T L L L+TN L+ +PDG F L SLQ++ L
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKS-VPDGIFDRLTSLQKIWLH 355
Query: 85 GN 86
N
Sbjct: 356 TN 357
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 133 LEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPP-SIGNLTFLKELYLSSNQM 191
L+KL LG NQL L L+ L L N SIP + LT L+ L LS+NQ+
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Query: 192 NGFPE-SFGQLSAIEVLDLDENQWEGIITETHF 223
P +F +L ++ + L NQ++ ET +
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQFDCSRCETLY 200
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 21/159 (13%)
Query: 431 NTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG 490
TLS + D L + L L NN ++ + + +D L LG NQL ++P+ +
Sbjct: 72 QTLSAGVFDD---LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVF 127
Query: 491 ESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPD 550
+ + L LRL +N KL+ L L LS N L +P G F R+
Sbjct: 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPH--GAFDRL------ 178
Query: 551 SVEYEGSLQ-VVLKGTQY--VFYSTLYLVNLMDLSSNNL 586
G LQ + L G Q+ TLYL + +SN +
Sbjct: 179 -----GKLQTITLFGNQFDCSRCETLYLSQWIRENSNKV 212
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 27 FTSLQVLDLSNNGFNSKIPHWLFN-ITRLSSLDLNTNDLQGDIPDG-FSSLNSLQQLDLT 84
T L+ L L+ N S IP F+ +T L +L L+TN LQ +P G F L LQ + L
Sbjct: 130 LTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLF 187
Query: 85 GNSF 88
GN F
Sbjct: 188 GNQF 191
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 14 NLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFN-ITRLSSLDLNTNDLQGDIPDG- 71
+LP+ F + T L L L N S +P +F+ +T+L L LNTN LQ IP G
Sbjct: 97 SLPLGVFD----HLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQS-IPAGA 150
Query: 72 FSSLNSLQQLDLTGNSFLG---GRLSRNLGKL 100
F L +LQ L L+ N G R LGKL
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDR-LGKL 181
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 109 SRNSISGEVSDFINGLSECTNS------SLLEKLELGFNQLTGDLPNSLGYLKNLRYLEL 162
++ S+S + S +G S S + ++ L+L FN++T L NL+ L L
Sbjct: 24 AQESLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLIL 83
Query: 163 WD---NSFVGSIPPSIGNLTFLKELYLSSNQMNGFPES-FGQLSAIEVLDLDENQWEGII 218
N+ G S+G+L + L LS N ++ S FG LS+++ L+L N ++ +
Sbjct: 84 KSSRINTIEGDAFYSLGSL---EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 140
Query: 219 TETHFRNLSNLKEISL 234
+ F NL+NL+ + +
Sbjct: 141 VTSLFPNLTNLQTLRI 156
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 30 LQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFL 89
LQVL L ++ N+ +++ L LDL+ N L F L+SL+ L+L GN +
Sbjct: 78 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
Query: 90 GGRLSRNLGKLCNLRTLKLSRNSISGEVS--DFINGLSECTNSSLLEKLELGFNQLTGDL 147
++ L NL+TL++ E+ DF GL+ L +LE+ L
Sbjct: 138 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-GLTS------LNELEIKALSLRNYQ 190
Query: 148 PNSLGYLKNLRYLEL 162
SL ++++ +L L
Sbjct: 191 SQSLKSIRDIHHLTL 205
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 419 NISSLYILDMSNNTLSGEIPDSIGC---LLSVRFLILCNNHI-----SGEVPPSLKNCSM 470
++ SL LD+S N + E + C S++ L+L NH+ +GE+ +LKN
Sbjct: 358 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN--- 414
Query: 471 MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN----GTIPPELCKLSALHILDLS 526
+ SLD+ N MP + + N G + C L +LD+S
Sbjct: 415 LTSLDISRNTF---------HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS 465
Query: 527 HNNLSGF 533
+NNL F
Sbjct: 466 NNNLDSF 472
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 469 SMMDSLDLGDNQLSGNIPAWIG----ESMPSLSILRLRSNYFNGTIPPELCKLSALHILD 524
+ M SLDL N+++ +IG + +L +L L+S+ N L +L LD
Sbjct: 52 AAMKSLDLSFNKIT-----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 106
Query: 525 LSHNNLSGFIPSCVGNFSRMK 545
LS N+LS S G S +K
Sbjct: 107 LSDNHLSSLSSSWFGPLSSLK 127
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 34/215 (15%)
Query: 29 SLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSF 88
S + LDLS N + F+ L LDL+ ++Q + SL+ L L LTGN
Sbjct: 31 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 89 ----LGG-----------RLSRNL--------GKLCNLRTLKLSRNSI-SGEVSDFINGL 124
LG L NL G L L+ L ++ N I S ++ ++ + L
Sbjct: 91 QSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 150
Query: 125 SECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSF---VGSIPPSIGNLTFL 181
+ LE L+L N++ L L + L L + + I P L
Sbjct: 151 TN------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 204
Query: 182 KELYLSSNQMNGFPES-FGQLSAIEVLDLDENQWE 215
KEL L +NQ+ P+ F +L++++ + L N W+
Sbjct: 205 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 239
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 175 IGNLTFLKELYLSSNQMNGF--PESFGQLSAIEVLDLDENQWEGI 217
IG+L LKEL ++ N + F PE F L+ +E LDL N+ + I
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 112 SISGEVSDFINGLSECTNS------SLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWD- 164
S+S + S +G S S + ++ L+L FN++T L NL+ L L
Sbjct: 1 SLSCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS 60
Query: 165 --NSFVGSIPPSIGNLTFLKELYLSSNQMNGFPES-FGQLSAIEVLDLDENQWEGIITET 221
N+ G S+G+L + L LS N ++ S FG LS+++ L+L N ++ + +
Sbjct: 61 RINTIEGDAFYSLGSL---EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117
Query: 222 HFRNLSNLKEISL 234
F NL+NL+ + +
Sbjct: 118 LFPNLTNLQTLRI 130
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 9/135 (6%)
Query: 30 LQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFL 89
LQVL L ++ N+ +++ L LDL+ N L F L+SL+ L+L GN +
Sbjct: 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 90 GGRLSRNLGKLCNLRTLKLSRNSISGEVS--DFINGLSECTNSSLLEKLELGFNQLTGDL 147
++ L NL+TL++ E+ DF GL+ L +LE+ L
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-GLTS------LNELEIKALSLRNYQ 164
Query: 148 PNSLGYLKNLRYLEL 162
SL ++++ +L L
Sbjct: 165 SQSLKSIRDIHHLTL 179
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 24/127 (18%)
Query: 419 NISSLYILDMSNNTLSGEIPDSIGC---LLSVRFLILCNNHI-----SGEVPPSLKNCSM 470
++ SL LD+S N + E + C S++ L+L NH+ +GE+ +LKN
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKN--- 388
Query: 471 MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN----GTIPPELCKLSALHILDLS 526
+ SLD+ N MP + + N G + C L +LD+S
Sbjct: 389 LTSLDISRNTF---------HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS 439
Query: 527 HNNLSGF 533
+NNL F
Sbjct: 440 NNNLDSF 446
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 469 SMMDSLDLGDNQLSGNIPAWIG----ESMPSLSILRLRSNYFNGTIPPELCKLSALHILD 524
+ M SLDL N+++ +IG + +L +L L+S+ N L +L LD
Sbjct: 26 AAMKSLDLSFNKIT-----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80
Query: 525 LSHNNLSGFIPSCVGNFSRMK 545
LS N+LS S G S +K
Sbjct: 81 LSDNHLSSLSSSWFGPLSSLK 101
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 110/463 (23%), Positives = 183/463 (39%), Gaps = 73/463 (15%)
Query: 30 LQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFL 89
LQ L L++NG N+ ++ L LDL+ N L F L+SL L+L GN +
Sbjct: 52 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 90 GGRLSRNLGKLCNLRTLKLSRNSISGEV--SDFINGLSECTNSSLLEKLELGFNQLTGDL 147
+ L L+ L++ ++ DF GL + LE+LE+ + L
Sbjct: 112 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GL------TFLEELEIDASDLQSYE 164
Query: 148 PNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVL 207
P SL ++N+ +L L + + + + ++ L L ++ F F +LS E
Sbjct: 165 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF--HFSELSTGET- 221
Query: 208 DLDENQWEGIITETHFRNLSNLKE--ISLYKLSENISLIFNIS----------------- 248
+I + FRN+ E + KL IS + +
Sbjct: 222 -------NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFDDCTLNGVGNFRASDN 274
Query: 249 SHWIPPFKLTFIKIRSCQLGPKFPTW-----LRNQTE-LTTLVLNNARISDTVPNWFWQL 302
I P K+ + IR + P+F + L + TE + + + N+++ VP Q
Sbjct: 275 DRVIDPGKVETLTIRRLHI-PRFYLFYDLSTLYSLTERVKRITVENSKVF-LVPCLLSQH 332
Query: 303 DLALDELDVGSNELSGRIPN---------SLGFRFPGTVDLSSNSFEGPLPLWSFNVTKL 353
+L+ LD+ N + SL L+S G L N+T +
Sbjct: 333 LKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNI 392
Query: 354 YLNNNSF-SGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQ--------------Q 398
++ NSF S P + +K+ +L +S+ G +PK++ L Q
Sbjct: 393 DISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDVSNNNLNLFSLNLPQ 452
Query: 399 LLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSI 441
L L IS N L +P S + L +L +S N L +PD I
Sbjct: 453 LKELYISRNKLMT-LPDA-SLLPMLLVLKISRNQLKS-VPDGI 492
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 576 VNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKN--- 632
V +DLS+N ++ +L R ++L L L+ N + L LE LDLS N
Sbjct: 28 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 633 KLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLK 672
LS S + SLTF+N L Y L GE + L+
Sbjct: 88 NLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKLQ 126
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 40/218 (18%)
Query: 29 SLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSF 88
S + LDLS N + F+ L LDL+ ++Q + SL+ L L LTGN
Sbjct: 30 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 89 LGGRLSRNLGKLCNLRTLK--LSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTG- 145
S LG L +L+ ++ + + +F G + L++L + N +
Sbjct: 90 ----QSLALGAFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSF 140
Query: 146 DLPNSLGYLKNLRYLELWDNSF---------------------------VGSIPPSIGNL 178
LP L NL +L+L N + I P
Sbjct: 141 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 200
Query: 179 TFLKELYLSSNQMNGFPES-FGQLSAIEVLDLDENQWE 215
LKEL L +NQ+ P+ F +L++++ + L N W+
Sbjct: 201 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 238
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 175 IGNLTFLKELYLSSNQMNGF--PESFGQLSAIEVLDLDENQWEGI 217
IG+L LKEL ++ N + F PE F L+ +E LDL N+ + I
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 40/218 (18%)
Query: 29 SLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSF 88
S + LDLS N + F+ L LDL+ ++Q + SL+ L L LTGN
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 89 LGGRLSRNLGKLCNLRTLK--LSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTG- 145
S LG L +L+ ++ + + +F G + L++L + N +
Sbjct: 89 ----QSLALGAFSGLSSLQKLVAVETNLASLENFPIG-----HLKTLKELNVAHNLIQSF 139
Query: 146 DLPNSLGYLKNLRYLELWDNSF---------------------------VGSIPPSIGNL 178
LP L NL +L+L N + I P
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 179 TFLKELYLSSNQMNGFPES-FGQLSAIEVLDLDENQWE 215
LKEL L +NQ+ P+ F +L++++ + L N W+
Sbjct: 200 IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 175 IGNLTFLKELYLSSNQMNGF--PESFGQLSAIEVLDLDENQWEGI 217
IG+L LKEL ++ N + F PE F L+ +E LDL N+ + I
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 136 LELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFP 195
L+L N++T LKNL L L +N P + L L+ LYLS NQ+ P
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 196 ESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSEN 240
E + ++ L + EN+ IT+ + L ++ + +L N
Sbjct: 117 EKMPK--TLQELRVHENE----ITKVRKSVFNGLNQMIVVELGTN 155
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 45/275 (16%)
Query: 364 IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSL 423
+P+D P LD+ N + NL+ L TL++ NN +S P ++ + L
Sbjct: 46 VPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 424 YILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL-S 482
L +S N L E+P+ + L + L + N I+ + M ++LG N L S
Sbjct: 103 ERLYLSKNQLK-ELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 483 GNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-CKLSALHILDLSHNNLSGFIPSCVGNF 541
I + M LS +R+ TIP L L+ LH LD GN
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELH-LD--------------GN- 202
Query: 542 SRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLG 601
KI D+ +G L + + LS N++S L HL
Sbjct: 203 ---KITKVDAASLKG----------------LNNLAKLGLSFNSISAVDNGSLANTPHLR 243
Query: 602 TLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSG 636
L+L+ N LV K+P + ++++ + L N +S
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Query: 133 LEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPP-SIGNLTFLKELYLSSNQM 191
L+KL LG NQL L L+ L L N SIP + LT L+ L LS+NQ+
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQL 167
Query: 192 NGFPE-SFGQLSAIEVLDLDENQWE 215
P +F +L ++ + L NQ++
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 431 NTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG 490
TLS + D L + L L NN ++ + + +D L LG NQL ++P+ +
Sbjct: 72 QTLSAGVFDD---LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVF 127
Query: 491 ESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRM 544
+ + L LRL +N KL+ L L LS N L +P G F R+
Sbjct: 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPH--GAFDRL 178
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 27 FTSLQVLDLSNNGFNSKIPHWLFN-ITRLSSLDLNTNDLQGDIPDG-FSSLNSLQQLDLT 84
T L+ L L+ N S IP F+ +T L +L L+TN LQ +P G F L LQ + L
Sbjct: 130 LTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLF 187
Query: 85 GNSF 88
GN F
Sbjct: 188 GNQF 191
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 14 NLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFN-ITRLSSLDLNTNDLQGDIPDG- 71
+LP+ F + T L L L N S +P +F+ +T+L L LNTN LQ IP G
Sbjct: 97 SLPLGVFD----HLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQS-IPAGA 150
Query: 72 FSSLNSLQQLDLTGNSFLG---GRLSRNLGKL 100
F L +LQ L L+ N G R LGKL
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDR-LGKL 181
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Query: 136 LELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFP 195
L+L N++T LKNL L L +N P + L L+ LYLS NQ+ P
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 196 ESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSEN 240
E + ++ L + EN+ IT+ + L ++ + +L N
Sbjct: 117 EKMPK--TLQELRVHENE----ITKVRKSVFNGLNQMIVVELGTN 155
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 70/275 (25%), Positives = 111/275 (40%), Gaps = 45/275 (16%)
Query: 364 IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSL 423
+P+D P LD+ N + NL+ L TL++ NN +S P ++ + L
Sbjct: 46 VPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102
Query: 424 YILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQL-S 482
L +S N L E+P+ + L + L + N I+ + M ++LG N L S
Sbjct: 103 ERLYLSKNQLK-ELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS 159
Query: 483 GNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-CKLSALHILDLSHNNLSGFIPSCVGNF 541
I + M LS +R+ TIP L L+ LH LD GN
Sbjct: 160 SGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELH-LD--------------GN- 202
Query: 542 SRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLG 601
KI D+ +G L + + LS N++S L HL
Sbjct: 203 ---KITKVDAASLKG----------------LNNLAKLGLSFNSISAVDNGSLANTPHLR 243
Query: 602 TLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSG 636
L+L+ N LV K+P + ++++ + L N +S
Sbjct: 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 7/144 (4%)
Query: 69 PDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDF--INGLSE 126
PD L+ LQ + L + L TL L+RN + + +N L E
Sbjct: 97 PDQAFRLSHLQHXTIDAAGLX--ELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRE 154
Query: 127 CTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLEL-WDNSFVGSIPPSIGNLTFLKELY 185
+ + E EL + D L NL+ L L W + + S+P SI NL LK L
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW--TGIRSLPASIANLQNLKSLK 212
Query: 186 LSSNQMNGFPESFGQLSAIEVLDL 209
+ ++ ++ + L +E LDL
Sbjct: 213 IRNSPLSALGPAIHHLPKLEELDL 236
Score = 33.1 bits (74), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 388 SVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSV 447
S+P SI NLQ L +L I N+ LS P + ++ L LD+ T P G +
Sbjct: 197 SLPASIANLQNLKSLKIRNSPLSALGPAI-HHLPKLEELDLRGCTALRNYPPIFGGRAPL 255
Query: 448 RFLIL--CNNHISGEVPPSLKNCSMMDSLDL 476
+ LIL C+N ++ +P + + ++ LDL
Sbjct: 256 KRLILKDCSNLLT--LPLDIHRLTQLEKLDL 284
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 34/215 (15%)
Query: 29 SLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSF 88
S + LDLS N + F+ L LDL+ ++Q + SL+ L L LTGN
Sbjct: 30 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 89
Query: 89 ----LGG-----------RLSRNL--------GKLCNLRTLKLSRNSI-SGEVSDFINGL 124
LG + NL G L L+ L ++ N I S ++ ++ + L
Sbjct: 90 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 149
Query: 125 SECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSF---VGSIPPSIGNLTFL 181
+ LE L+L N++ L L + L L + + I P L
Sbjct: 150 TN------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 203
Query: 182 KELYLSSNQMNGFPES-FGQLSAIEVLDLDENQWE 215
KEL L +NQ+ P+ F +L++++ + L N W+
Sbjct: 204 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 238
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 175 IGNLTFLKELYLSSNQMNGF--PESFGQLSAIEVLDLDENQWEGI 217
IG+L LKEL ++ N + F PE F L+ +E LDL N+ + I
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 90/215 (41%), Gaps = 34/215 (15%)
Query: 29 SLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSF 88
S + LDLS N + F+ L LDL+ ++Q + SL+ L L LTGN
Sbjct: 31 STKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 90
Query: 89 ----LGG-----------RLSRNL--------GKLCNLRTLKLSRNSI-SGEVSDFINGL 124
LG + NL G L L+ L ++ N I S ++ ++ + L
Sbjct: 91 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 150
Query: 125 SECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSF---VGSIPPSIGNLTFL 181
+ LE L+L N++ L L + L L + + I P L
Sbjct: 151 TN------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 204
Query: 182 KELYLSSNQMNGFPES-FGQLSAIEVLDLDENQWE 215
KEL L +NQ+ P+ F +L++++ + L N W+
Sbjct: 205 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 239
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 175 IGNLTFLKELYLSSNQMNGF--PESFGQLSAIEVLDLDENQWEGI 217
IG+L LKEL ++ N + F PE F L+ +E LDL N+ + I
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 133 LEKLELGFNQLTGDLPNSL-GYLKNLRYLELWDNSFVGSIPPSI-GNLTFLKELYLSSNQ 190
L KL L NQ+ LP+ + L L L L +N S+P + LT LKEL L +NQ
Sbjct: 54 LTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKELALDTNQ 111
Query: 191 MNGFPES-FGQLSAIEVLDLDENQWE 215
+ P+ F +L++++ + L N W+
Sbjct: 112 LKSVPDGIFDRLTSLQKIWLHTNPWD 137
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 9/133 (6%)
Query: 109 SRNSISG-EVSDFINGLSECTNS--SLLEKLELGFNQLTGDLPNSL-GYLKNLRYLELWD 164
SR S SG E+ GL+ S +LEL N+L LP+ + L L L L
Sbjct: 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQ 61
Query: 165 NSFVGSIPPSI-GNLTFLKELYLSSNQMNGFPES-FGQLSAIEVLDLDENQWEGIITETH 222
N + S+P + LT L LYL N++ P F +L+ ++ L LD NQ + + +
Sbjct: 62 NQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGI 119
Query: 223 FRNLSNLKEISLY 235
F L++L++I L+
Sbjct: 120 FDRLTSLQKIWLH 132
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 26 NFTSLQVLDLSNNGFNSKIPHWLFN-ITRLSSLDLNTNDLQGDIPDG-FSSLNSLQQLDL 83
T L +L L N S +P+ +F+ +T+L L L+TN L+ +PDG F L SLQ++ L
Sbjct: 74 KLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWL 131
Query: 84 TGNSF 88
N +
Sbjct: 132 HTNPW 136
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 33/138 (23%)
Query: 99 KLCNLRTLKLSRNSISG-EVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNL 157
L +L L+L RNSI EV F NGL+ L LEL N LT + YL L
Sbjct: 97 HLHHLEVLQLGRNSIRQIEVGAF-NGLAS------LNTLELFDNWLTVIPSGAFEYLSKL 149
Query: 158 RYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPE-SFGQLSAIEVLDLDENQWEG 216
R EL+L +N + P +F ++ ++ LDL E +
Sbjct: 150 R------------------------ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185
Query: 217 IITETHFRNLSNLKEISL 234
I+E F L NLK ++L
Sbjct: 186 YISEGAFEGLFNLKYLNL 203
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 95/226 (42%), Gaps = 16/226 (7%)
Query: 436 EIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPS 495
E+P I + R+L L N+I + ++ ++ L LG N + I + S
Sbjct: 68 EVPQGIPS--NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLAS 124
Query: 496 LSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNF--SRMKIEPPDSVE 553
L+ L L N+ LS L L L +N + IPS N S M+++ + +
Sbjct: 125 LNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKK 183
Query: 554 YEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGK 613
E + +G + Y L + N+ D MP LT L+ L L +S NH
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKD---------MP-NLTPLVGLEELEMSGNHFPEI 233
Query: 614 IPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 659
P L L+ L + +++S + L + LNL++NNLS
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 152 GYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPES-FGQLSAIEVLDLD 210
G + L L+DN P LT L L L +NQ+ P F +L+ + L L+
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 211 ENQWEGIITETHFRNLSNLKEISL 234
+NQ + I F NL +L I L
Sbjct: 87 DNQLKS-IPRGAFDNLKSLTHIWL 109
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 152 GYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPES-FGQLSAIEVLDLD 210
G + L L+DN P LT L L L +NQ+ P F +L+ + L L+
Sbjct: 35 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 94
Query: 211 ENQWEGIITETHFRNLSNLKEISL 234
+NQ + I F NL +L I L
Sbjct: 95 DNQLKS-IPRGAFDNLKSLTHIWL 117
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 152 GYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPES-FGQLSAIEVLDLD 210
G + L L+DN P LT L L L +NQ+ P F +L+ + L L+
Sbjct: 27 GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 211 ENQWEGIITETHFRNLSNLKEISL 234
+NQ + I F NL +L I L
Sbjct: 87 DNQLKS-IPRGAFDNLRSLTHIWL 109
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 133/335 (39%), Gaps = 65/335 (19%)
Query: 153 YLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDEN 212
YL NL YL L N P + NL L LY+ +N++
Sbjct: 64 YLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI------------------ 103
Query: 213 QWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFP 272
+ +NL+NL+E LY +NIS I P LT K S LG
Sbjct: 104 --------SALQNLTNLRE--LYLNEDNISDIS-------PLANLT--KXYSLNLGANHN 144
Query: 273 ----TWLRNQTELTTLVLNNARISDTVP----NWFWQLDLALDELDVGSNELSGRIPNSL 324
+ L N T L L + +++ D P + L L ++++ ++S +
Sbjct: 145 LSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIE----DISPLASLTS 200
Query: 325 GFRFPGTVDLSSNSFEGPLPLWSFN-VTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFN 383
F V N P+ + + L + NN + P + LT L+I N
Sbjct: 201 LHYFTAYV----NQITDITPVANXTRLNSLKIGNNKITDLSPL---ANLSQLTWLEIGTN 253
Query: 384 SLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGC 443
+ S ++ +L +L L + +N +S + +N+S L L ++NN L E + IG
Sbjct: 254 QI--SDINAVKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGG 309
Query: 444 LLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGD 478
L ++ L L NHI+ P L + S DS D +
Sbjct: 310 LTNLTTLFLSQNHITDIRP--LASLSKXDSADFAN 342
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 72/284 (25%), Positives = 125/284 (44%), Gaps = 34/284 (11%)
Query: 27 FTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQL----- 81
T+L+ L+L+ N P L N+ +L++L + TN + DI +L +L++L
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DIS-ALQNLTNLRELYLNED 120
Query: 82 ---DLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSIS----GEVSDFINGLSECTNSSLLE 134
D++ + L S NLG NL L N + ++ N + L
Sbjct: 121 NISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLY 180
Query: 135 KLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGF 194
L L +NQ+ P L L +L Y + N P + N T L L + +N++
Sbjct: 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDL 236
Query: 195 PESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISL--YKLSENISLIFNISSHWI 252
LS + L++ NQ I ++L+ LK +++ ++S+ IS++ N+S
Sbjct: 237 -SPLANLSQLTWLEIGTNQISDI---NAVKDLTKLKXLNVGSNQISD-ISVLNNLS---- 287
Query: 253 PPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVP 296
+L + + + QLG + + T LTTL L+ I+D P
Sbjct: 288 ---QLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 133 LEKLELGFNQLTGDLPNSL-GYLKNLRYLELWDNSFVGSIPPSI-GNLTFLKELYLSSNQ 190
L LEL N ++P+ L L+NL +E N + +P I G + LK+L L+SNQ
Sbjct: 149 LSHLELRAN--IEEMPSHLFDDLENLESIEFGSNK-LRQMPRGIFGKMPKLKQLNLASNQ 205
Query: 191 MNGFPES-FGQLSAIEVLDLDENQWE 215
+ P+ F +L++++ + L N W+
Sbjct: 206 LKSVPDGIFDRLTSLQKIWLHTNPWD 231
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 30 LQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFL 89
LQ L L++NG N+ ++ L LDL+ N L F L+SL L+L GN +
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 90 GGRLSRNLGKLCNLRTLKLSRNSISGEV--SDFINGLSECTNSSLLEKLELGFNQLTGDL 147
+ L L+ L++ ++ DF GL + LE+LE+ + L
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GL------TFLEELEIDASDLQSYE 190
Query: 148 PNSLGYLKNLRYLEL 162
P SL ++N+ +L L
Sbjct: 191 PKSLKSIQNVSHLIL 205
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 4/100 (4%)
Query: 576 VNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKN--- 632
V +DLS+N ++ +L R ++L L L+ N + L LE LDLS N
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 633 KLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLK 672
LS S + SLTF+N L Y L GE + L+
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTKLQ 152
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 26/103 (25%)
Query: 134 EKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNG 193
++L L NQ+T P +L N L++LY +SN++
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVN------------------------LQQLYFNSNKLTA 71
Query: 194 FPES-FGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY 235
P F +L+ + LDL++N + I F NL +L I LY
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLY 113
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 348 FNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPK-SIGNLQQLLTLVISN 406
N+ +LY N+N + IP K+ LT LD++ N L S+P+ + NL+ L + + N
Sbjct: 57 VNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYN 114
Query: 407 NNLSGEI 413
N E
Sbjct: 115 NPWDCEC 121
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 97/227 (42%), Gaps = 36/227 (15%)
Query: 454 NNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE 513
NN + V SL+ + L+ NQL G +PA+ E L+ L L N IP
Sbjct: 315 NNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEI--KLASLNLAYNQIT-EIPAN 371
Query: 514 LCKLS-ALHILDLSHNNLSGFIPSCVG----------NFSRMKIEPPDSVEYEGSLQVVL 562
C + + L +HN L +IP+ +FS +I D ++
Sbjct: 372 FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPF 430
Query: 563 KGTQYVFYSTLYLVNLMDLSSNNLSGEMPVEL-TRLIHLGTLNLSQNHLVGKIPTQIGKL 621
KG V+ ++LS+N +S + P EL + L ++NL N L +IP K
Sbjct: 431 KGIN---------VSSINLSNNQIS-KFPKELFSTGSPLSSINLXGNXLT-EIPKNSLKD 479
Query: 622 E--------WLESLDLSKNKLSG-SIPPSMVSLTFMNHLNLSYNNLS 659
E L S+DL NKL+ S +L ++ ++LSYN+ S
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 9/99 (9%)
Query: 584 NNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQI-GKLEWLESLDLSKNKLSGSIPP-- 640
N L G++P I L +LNL+ N + +IP G E +E+L + NKL IP
Sbjct: 340 NQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396
Query: 641 SMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYEG 679
S++ + ++ SYN + G + N F L DP+ ++G
Sbjct: 397 DAKSVSVXSAIDFSYNEI-GSVDGKN-FDPL-DPTPFKG 432
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 577 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSG 636
N++D L+ E+P L I + L QN + P + L +DLS N++S
Sbjct: 14 NIVDCRGKGLT-EIPTNLPETI--TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 637 SIPPSMVSLTFMNHLNLSYNNLSGEIPK 664
P + L +N L L Y N E+PK
Sbjct: 71 LAPDAFQGLRSLNSLVL-YGNKITELPK 97
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 395 NLQQLLTLV-ISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILC 453
NL + +T + + N + P +S L +D+SNN +S PD+ L S+ L+L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 454 NNHISGEVPPSL 465
N I+ E+P SL
Sbjct: 89 GNKIT-ELPKSL 99
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 577 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSG 636
N++D L+ E+P L I + L QN + P + L +DLS N++S
Sbjct: 14 NIVDCRGKGLT-EIPTNLPETI--TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISE 70
Query: 637 SIPPSMVSLTFMNHLNLSYNNLSGEIPK 664
P + L +N L L Y N E+PK
Sbjct: 71 LAPDAFQGLRSLNSLVL-YGNKITELPK 97
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 395 NLQQLLTLV-ISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILC 453
NL + +T + + N + P +S L +D+SNN +S PD+ L S+ L+L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 454 NNHISGEVPPSL 465
N I+ E+P SL
Sbjct: 89 GNKIT-ELPKSL 99
>pdb|3ZZM|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|3ZZM|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh With
A Novel Bound Nucleotide Cfair, At 2.2 A Resolution.
pdb|4A1O|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution.
pdb|4A1O|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Purh
Complexed With Aicar And A Novel Nucleotide Cfair, At
2.48 A Resolution
Length = 523
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 486 PAWIGESMPSLSILRLRSN-------YFNGTIPPELCKLSALHILDLSHNNLS 531
P W G S +++LR N Y + T P L + LH D+S+NN +
Sbjct: 210 PQWFGRSWRRVAMLRYGENPHQQAALYGDPTAWPGLAQAEQLHGKDMSYNNFT 262
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Query: 134 EKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNG 193
+ L L NQ+T P L L YL L N LT L L L NQ+
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 194 FPES-FGQLSAIEVLDLDENQWE 215
P F L ++ + L N W+
Sbjct: 103 IPMGVFDNLKSLTHIYLFNNPWD 125
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 30 LQVLDLSNNGFNSKIPHWLF-NITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSF 88
LQ LD ++ F ++ +L LD++ + + D F L SL L + GNSF
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460
Query: 89 LGGRLSRNLGKLCNLRTLKLSR 110
LS NL L LS+
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSK 482
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 55/251 (21%)
Query: 309 LDVGSNELSG--RIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPR 366
+DV +N L +P SL F G L LP +T +Y +NNS
Sbjct: 158 IDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPF----LTAIYADNNSL------ 207
Query: 367 DFGQKIPFLTDLDISFNSL--NGSVPKSIGNLQQL--LTLVISNNNLSGEIPQLWSNISS 422
+K+P DL +S S+ ++ + + LQ L LT + ++NNL +P L ++ +
Sbjct: 208 ---KKLP---DLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEA 261
Query: 423 LYILDMSNNTLSG--EIPDSIGCLLSVRFLILCNNHISG--EVPPSLKNCSMMDSLDLGD 478
L + D N L+ E+P S+ FL + N SG E+PP+L L+
Sbjct: 262 LNVRD---NYLTDLPELPQSLT------FLDVSENIFSGLSELPPNLY------YLNASS 306
Query: 479 NQLSGNIPAWIGESMPSLSILRLRSNYFNG--TIPPELCKLSALHILDLSHNNLSGFIPS 536
N++ + + PSL L + +N +PP L +L A S N+L+ +P
Sbjct: 307 NEIRS-----LCDLPPSLEELNVSNNKLIELPALPPRLERLIA------SFNHLAE-VPE 354
Query: 537 CVGNFSRMKIE 547
N ++ +E
Sbjct: 355 LPQNLKQLHVE 365
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 30 LQVLDLSNNGFNSKIPHWLF-NITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSF 88
LQ LD ++ F ++ +L LD++ + + D F L SL L + GNSF
Sbjct: 396 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 455
Query: 89 LGGRLSRNLGKLCNLRTLKLSR 110
LS NL L LS+
Sbjct: 456 KDNTLSNVFANTTNLTFLDLSK 477
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 6/113 (5%)
Query: 147 LPNSLGYLKNLRYLELWDNSFVGSIPPSIGN-LTFLKELYLSSNQMNGFPESFGQLSAIE 205
+P S G + ++++ I SIG + + +L +N +N PE Q +
Sbjct: 114 MPRSAGKKQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGIN--PEDLSQKEYSD 171
Query: 206 VLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLT 258
+++ E + +I HF N N KE+ L K I + + S +P L
Sbjct: 172 IINTQEMYNDDLI---HFSNSENCKELQLEKHKGEILGVVVVESSILPTVILA 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,101,428
Number of Sequences: 62578
Number of extensions: 891389
Number of successful extensions: 2993
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1808
Number of HSP's gapped (non-prelim): 568
length of query: 698
length of database: 14,973,337
effective HSP length: 106
effective length of query: 592
effective length of database: 8,340,069
effective search space: 4937320848
effective search space used: 4937320848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)