Query 047203
Match_columns 698
No_of_seqs 269 out of 3421
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 08:47:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.6E-55 7.7E-60 508.7 40.3 542 27-687 68-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.1E-50 4.6E-55 468.8 36.7 536 3-658 69-606 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.7E-36 1.4E-40 292.6 8.5 387 30-501 54-446 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.4E-36 5.3E-41 295.6 5.4 422 158-691 81-505 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 3.4E-36 7.4E-41 281.9 -15.2 480 28-664 45-544 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 3.1E-36 6.8E-41 282.1 -18.1 488 5-531 47-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 2.6E-32 5.7E-37 282.0 -5.0 504 8-656 3-510 (1081)
8 KOG0618 Serine/threonine phosp 100.0 1.2E-32 2.5E-37 284.6 -8.9 483 33-658 3-488 (1081)
9 KOG0444 Cytoskeletal regulator 99.9 3.9E-30 8.5E-35 254.2 -3.7 252 364-655 141-395 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 8.5E-30 1.8E-34 251.8 -5.6 274 350-664 105-380 (1255)
11 PLN03210 Resistant to P. syrin 99.9 6E-22 1.3E-26 230.4 28.1 348 271-664 550-911 (1153)
12 PLN03210 Resistant to P. syrin 99.9 8.4E-21 1.8E-25 220.9 27.5 344 147-532 550-907 (1153)
13 KOG4237 Extracellular matrix p 99.8 7.2E-23 1.6E-27 192.6 -3.6 268 8-292 51-359 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 1.1E-18 2.5E-23 187.8 17.1 258 331-663 205-462 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 5.9E-18 1.3E-22 182.3 16.3 245 328-644 223-467 (788)
16 KOG4237 Extracellular matrix p 99.8 2.1E-20 4.6E-25 176.1 -2.1 311 332-675 51-392 (498)
17 cd00116 LRR_RI Leucine-rich re 99.7 7.5E-19 1.6E-23 178.3 -0.5 278 353-658 3-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 4.8E-17 1E-21 176.6 12.6 246 349-659 179-428 (754)
19 PRK15370 E3 ubiquitin-protein 99.7 5.8E-16 1.3E-20 168.3 13.4 227 347-635 198-428 (754)
20 cd00116 LRR_RI Leucine-rich re 99.6 2.2E-17 4.9E-22 167.4 -0.7 256 377-661 2-293 (319)
21 KOG0617 Ras suppressor protein 99.6 6.3E-18 1.4E-22 140.8 -5.8 177 12-200 17-194 (264)
22 KOG0617 Ras suppressor protein 99.5 1.5E-16 3.2E-21 132.7 -4.3 178 443-659 31-212 (264)
23 KOG3207 Beta-tubulin folding c 99.2 1.9E-12 4.2E-17 124.7 -0.9 211 1-217 119-341 (505)
24 KOG1909 Ran GTPase-activating 99.1 1.9E-12 4.2E-17 121.3 -4.9 245 24-292 26-311 (382)
25 KOG1909 Ran GTPase-activating 99.1 1.2E-11 2.6E-16 116.1 -2.0 249 371-659 28-311 (382)
26 KOG1259 Nischarin, modulator o 99.1 4.2E-11 9.2E-16 109.7 1.3 202 391-660 208-413 (490)
27 KOG3207 Beta-tubulin folding c 99.0 5E-11 1.1E-15 115.2 1.1 117 417-533 142-261 (505)
28 PF14580 LRR_9: Leucine-rich r 99.0 1.1E-10 2.3E-15 103.3 3.0 130 24-164 15-149 (175)
29 PLN03150 hypothetical protein; 99.0 7.3E-10 1.6E-14 120.7 9.0 119 575-694 419-539 (623)
30 COG4886 Leucine-rich repeat (L 99.0 7.3E-10 1.6E-14 115.6 6.8 105 420-529 115-220 (394)
31 PF14580 LRR_9: Leucine-rich r 99.0 4.6E-10 9.9E-15 99.2 4.1 66 465-531 60-126 (175)
32 KOG0532 Leucine-rich repeat (L 98.9 2.5E-11 5.5E-16 120.9 -6.3 192 423-657 77-271 (722)
33 KOG4658 Apoptotic ATPase [Sign 98.9 1.7E-09 3.6E-14 120.3 6.1 130 26-189 521-652 (889)
34 COG4886 Leucine-rich repeat (L 98.9 2.5E-09 5.3E-14 111.7 7.0 181 24-218 112-293 (394)
35 KOG0532 Leucine-rich repeat (L 98.8 9.3E-11 2E-15 117.0 -5.2 189 8-236 55-243 (722)
36 KOG1259 Nischarin, modulator o 98.8 6.8E-10 1.5E-14 102.0 0.7 78 133-214 309-386 (490)
37 PF13855 LRR_8: Leucine rich r 98.8 2.2E-09 4.7E-14 77.8 3.2 61 598-658 1-61 (61)
38 PLN03150 hypothetical protein; 98.8 9.5E-09 2.1E-13 112.1 8.9 87 577-663 445-532 (623)
39 KOG4658 Apoptotic ATPase [Sign 98.8 6.5E-09 1.4E-13 115.7 6.7 271 327-611 523-807 (889)
40 PF13855 LRR_8: Leucine rich r 98.8 5.6E-09 1.2E-13 75.6 3.3 60 28-87 1-60 (61)
41 KOG0531 Protein phosphatase 1, 98.7 1.6E-09 3.5E-14 113.0 -0.9 246 372-663 71-322 (414)
42 KOG2120 SCF ubiquitin ligase, 98.7 2.6E-10 5.6E-15 104.6 -7.7 181 28-213 185-374 (419)
43 KOG0531 Protein phosphatase 1, 98.6 4.5E-09 9.8E-14 109.6 -1.1 195 3-215 72-268 (414)
44 KOG2120 SCF ubiquitin ligase, 98.4 1.5E-08 3.2E-13 93.4 -3.6 179 445-656 185-373 (419)
45 COG5238 RNA1 Ran GTPase-activa 98.3 7.1E-08 1.5E-12 87.7 -0.9 199 27-225 29-265 (388)
46 KOG1859 Leucine-rich repeat pr 98.3 1.8E-08 3.9E-13 103.8 -6.2 158 21-193 102-293 (1096)
47 PRK15386 type III secretion pr 98.3 2.7E-06 5.8E-11 85.0 8.8 55 443-504 50-104 (426)
48 KOG1859 Leucine-rich repeat pr 98.3 2E-08 4.3E-13 103.5 -6.4 109 571-686 184-295 (1096)
49 KOG2982 Uncharacterized conser 98.2 2E-07 4.2E-12 86.1 -1.5 106 398-504 46-156 (418)
50 KOG2982 Uncharacterized conser 98.2 2.5E-07 5.3E-12 85.5 -1.4 58 179-236 199-258 (418)
51 KOG4341 F-box protein containi 98.1 5E-08 1.1E-12 94.3 -6.9 280 29-315 139-437 (483)
52 KOG4341 F-box protein containi 98.0 1.4E-07 3E-12 91.3 -6.8 39 596-634 399-438 (483)
53 KOG1644 U2-associated snRNP A' 97.9 1.8E-05 3.9E-10 69.4 6.0 105 6-114 22-126 (233)
54 KOG4579 Leucine-rich repeat (L 97.9 4.4E-07 9.5E-12 73.9 -3.8 88 577-667 80-167 (177)
55 KOG3665 ZYG-1-like serine/thre 97.9 3.8E-06 8.3E-11 91.5 1.7 107 4-112 123-231 (699)
56 COG5238 RNA1 Ran GTPase-activa 97.8 6.5E-06 1.4E-10 75.3 1.3 66 595-660 211-286 (388)
57 KOG3665 ZYG-1-like serine/thre 97.8 6.1E-06 1.3E-10 89.9 0.6 199 28-234 60-282 (699)
58 PRK15386 type III secretion pr 97.8 7.5E-05 1.6E-09 74.8 8.1 54 420-479 51-104 (426)
59 PF12799 LRR_4: Leucine Rich r 97.7 1.9E-05 4.2E-10 51.9 2.2 36 623-659 2-37 (44)
60 KOG1644 U2-associated snRNP A' 97.7 9.6E-05 2.1E-09 65.0 7.0 85 445-532 42-127 (233)
61 PF12799 LRR_4: Leucine Rich r 97.7 3.6E-05 7.8E-10 50.6 3.2 38 28-66 1-38 (44)
62 PF13306 LRR_5: Leucine rich r 97.6 0.00022 4.8E-09 61.0 8.3 101 372-477 11-111 (129)
63 PF13306 LRR_5: Leucine rich r 97.6 0.00018 3.9E-09 61.6 7.0 122 392-520 7-128 (129)
64 KOG4579 Leucine-rich repeat (L 97.6 1.8E-06 3.9E-11 70.3 -5.2 113 374-489 28-142 (177)
65 KOG1947 Leucine rich repeat pr 97.3 1.6E-05 3.4E-10 85.9 -4.2 60 468-527 268-330 (482)
66 KOG2123 Uncharacterized conser 97.1 1.7E-05 3.8E-10 72.8 -5.6 101 2-107 18-123 (388)
67 KOG1947 Leucine rich repeat pr 97.0 6E-05 1.3E-09 81.4 -3.6 231 420-660 187-441 (482)
68 KOG2739 Leucine-rich acidic nu 97.0 0.0005 1.1E-08 63.4 2.6 115 44-165 35-153 (260)
69 KOG2123 Uncharacterized conser 96.9 4.1E-05 9E-10 70.5 -4.7 101 420-524 18-123 (388)
70 KOG2739 Leucine-rich acidic nu 96.9 0.00053 1.1E-08 63.2 1.9 87 394-482 40-129 (260)
71 KOG3864 Uncharacterized conser 95.1 0.0018 3.9E-08 57.3 -3.1 84 576-659 103-189 (221)
72 PF00560 LRR_1: Leucine Rich R 94.5 0.017 3.6E-07 31.4 0.8 12 624-635 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 94.2 0.026 5.7E-07 30.6 1.3 17 181-197 2-18 (22)
74 KOG4308 LRR-containing protein 93.6 0.00035 7.6E-09 73.0 -12.8 109 422-531 88-217 (478)
75 KOG3864 Uncharacterized conser 92.9 0.013 2.7E-07 52.1 -2.2 81 447-527 103-185 (221)
76 PF13504 LRR_7: Leucine rich r 91.5 0.14 2.9E-06 25.7 1.4 15 180-194 2-16 (17)
77 KOG4308 LRR-containing protein 91.1 0.001 2.3E-08 69.6 -13.1 186 30-215 89-303 (478)
78 KOG4242 Predicted myosin-I-bin 87.8 2.2 4.8E-05 43.5 7.7 60 576-635 415-481 (553)
79 PF13516 LRR_6: Leucine Rich r 86.6 0.11 2.3E-06 28.9 -1.2 13 599-611 3-15 (24)
80 smart00369 LRR_TYP Leucine-ric 86.5 0.66 1.4E-05 26.2 2.1 20 101-120 2-21 (26)
81 smart00370 LRR Leucine-rich re 86.5 0.66 1.4E-05 26.2 2.1 20 101-120 2-21 (26)
82 smart00370 LRR Leucine-rich re 86.1 0.6 1.3E-05 26.4 1.8 16 52-67 2-17 (26)
83 smart00369 LRR_TYP Leucine-ric 86.1 0.6 1.3E-05 26.4 1.8 16 52-67 2-17 (26)
84 KOG0473 Leucine-rich repeat pr 84.5 0.019 4E-07 52.1 -7.5 94 16-114 31-124 (326)
85 KOG0473 Leucine-rich repeat pr 83.7 0.029 6.3E-07 50.9 -6.6 83 2-88 41-123 (326)
86 KOG4242 Predicted myosin-I-bin 78.1 4.2 9.2E-05 41.6 5.4 63 598-660 413-482 (553)
87 smart00365 LRR_SD22 Leucine-ri 65.4 5.6 0.00012 22.5 1.8 14 598-611 2-15 (26)
88 smart00368 LRR_RI Leucine rich 64.8 2.5 5.4E-05 24.4 0.3 14 599-612 3-16 (28)
89 smart00364 LRR_BAC Leucine-ric 58.4 6.7 0.00015 22.2 1.2 17 180-196 3-19 (26)
90 smart00367 LRR_CC Leucine-rich 50.9 8.7 0.00019 21.6 1.0 11 77-87 3-13 (26)
91 KOG3763 mRNA export factor TAP 30.8 21 0.00045 37.6 0.7 64 571-636 215-284 (585)
92 KOG3763 mRNA export factor TAP 30.3 22 0.00049 37.4 0.9 81 25-107 215-307 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.6e-55 Score=508.69 Aligned_cols=542 Identities=36% Similarity=0.597 Sum_probs=458.9
Q ss_pred CCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccc-cCCCCCcEEECCCCCCCCcccchhccCCCCCCE
Q 047203 27 FTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGF-SSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRT 105 (698)
Q Consensus 27 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 105 (698)
..+++.|+|+++.+++..+.+|..+++|++|++++|.+.+.+|..+ .++++|++|++++|.+ .+..| .+.+++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l-~~~~p--~~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNF-TGSIP--RGSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcc-ccccC--ccccCCCCE
Confidence 3579999999999988888899999999999999999987777665 5899999999999984 33333 256889999
Q ss_pred EeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeee
Q 047203 106 LKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELY 185 (698)
Q Consensus 106 L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 185 (698)
|++++|.+.+..+..+..+. +|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..++++++|++|+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~------~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFS------SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred EECcCCcccccCChHHhcCC------CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 99999998877766666655 899999999998888899999999999999999999888899999999999999
Q ss_pred ccCcccCc-cccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEecc
Q 047203 186 LSSNQMNG-FPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRS 264 (698)
Q Consensus 186 l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 264 (698)
+++|.+.. +|..+.++++|++|++++|.+.+..+. .+.++++|+.|.+..
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~---------------------------- 269 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQ---------------------------- 269 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcC----------------------------
Confidence 99999875 888899999999999999988765554 566666666666544
Q ss_pred ccCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCCCC
Q 047203 265 CQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLP 344 (698)
Q Consensus 265 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 344 (698)
|.+....|.++..+++|+.|++++|.+....+..+... +
T Consensus 270 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l-~---------------------------------------- 308 (968)
T PLN00113 270 NKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL-Q---------------------------------------- 308 (968)
T ss_pred CeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCC-C----------------------------------------
Confidence 45555677778888889999998888776665544332 3
Q ss_pred CcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCcc
Q 047203 345 LWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLY 424 (698)
Q Consensus 345 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 424 (698)
+|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+
T Consensus 309 ----~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 309 ----NLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred ----CCcEEECCCCccCCcCChhHh-cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 344444444444444444433 478888888888888877777788888999999999988877888888889999
Q ss_pred EEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCC
Q 047203 425 ILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 504 (698)
Q Consensus 425 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 504 (698)
.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.++..... +++|+.|++++|
T Consensus 384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n 462 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD-MPSLQMLSLARN 462 (968)
T ss_pred EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc-CCCCcEEECcCc
Confidence 9999999998888888888999999999999998888888999999999999999998777766554 899999999999
Q ss_pred cccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCC
Q 047203 505 YFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSN 584 (698)
Q Consensus 505 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 584 (698)
.+.+.+|..+ ..++|++|++++|.+.+..|..+.++++| +.|++++|
T Consensus 463 ~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L--------------------------------~~L~Ls~N 509 (968)
T PLN00113 463 KFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL--------------------------------MQLKLSEN 509 (968)
T ss_pred eeeeecCccc-ccccceEEECcCCccCCccChhhhhhhcc--------------------------------CEEECcCC
Confidence 9987777655 46899999999999998888777766666 88999999
Q ss_pred cCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecCCC
Q 047203 585 NLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPK 664 (698)
Q Consensus 585 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 664 (698)
.+.+..|..+.++++|++|+|++|.+++.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++++|++.+.+|.
T Consensus 510 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCccccCCCCCcCCC
Q 047203 665 VNQFQSLKDPSIYEGNLALCGDP 687 (698)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~ 687 (698)
.|++.++...+ |.|++.+|++.
T Consensus 590 ~~~~~~~~~~~-~~~n~~lc~~~ 611 (968)
T PLN00113 590 TGAFLAINASA-VAGNIDLCGGD 611 (968)
T ss_pred cchhcccChhh-hcCCccccCCc
Confidence 99999998877 99999999865
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-50 Score=468.78 Aligned_cols=536 Identities=32% Similarity=0.517 Sum_probs=410.7
Q ss_pred CcceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCcccc-CCCCCCEEEcccCcccccCCccccCCCCCcEE
Q 047203 3 RSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLF-NITRLSSLDLNTNDLQGDIPDGFSSLNSLQQL 81 (698)
Q Consensus 3 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 81 (698)
.+++.|+++++++.+... ..+..+++|++|+|++|.+.+.+|..+. .+++|++|++++|.+.+..|. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 478999999999876654 5677899999999999999877887655 999999999999999887775 568999999
Q ss_pred ECCCCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEE
Q 047203 82 DLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLE 161 (698)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 161 (698)
++++|. ..+..+..++.+++|++|++++|.+.+..+..+..+. +|++|++++|.+.+..|..+..+++|++|+
T Consensus 146 ~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 146 DLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT------SLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred ECcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhhhhCc------CCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 999998 4557788899999999999999998877777776665 899999999999988999999999999999
Q ss_pred ccCceeeecCCCCCcCcccCCeeeccCcccCc-cccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEeccccccc
Q 047203 162 LWDNSFVGSIPPSIGNLTFLKELYLSSNQMNG-FPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSEN 240 (698)
Q Consensus 162 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 240 (698)
+++|.+.+..|..++++++|++|++++|.+.. +|..+.++++|+.|++++|.+.+..+. .+..+++|++|++
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L------ 291 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP-SIFSLQKLISLDL------ 291 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCch-hHhhccCcCEEEC------
Confidence 99999998899999999999999999999876 889999999999999999998765554 4555655555555
Q ss_pred ceeeeecCCCccCCcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccC
Q 047203 241 ISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRI 320 (698)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 320 (698)
++|.+....|.++..+++|+.|++++|.+....+..+... ++|+.|++++|.+.
T Consensus 292 ----------------------s~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~--- 345 (968)
T PLN00113 292 ----------------------SDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL-PRLQVLQLWSNKFS--- 345 (968)
T ss_pred ----------------------cCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcC-CCCCEEECcCCCCc---
Confidence 4456666778888888899999998888876666554432 34444444444433
Q ss_pred CCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCc
Q 047203 321 PNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLL 400 (698)
Q Consensus 321 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 400 (698)
+..+..+. .+++|+.|++++|++.+..+..+..+++|+
T Consensus 346 -----------------------------------------~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 346 -----------------------------------------GEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred -----------------------------------------CcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 33333332 256666666666666655555566666677
Q ss_pred EEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCc
Q 047203 401 TLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQ 480 (698)
Q Consensus 401 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~ 480 (698)
.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..++.|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus 384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 77777776666666666667777777777777766666666677777777777777766666666667777777777777
Q ss_pred CcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEE
Q 047203 481 LSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQV 560 (698)
Q Consensus 481 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~ 560 (698)
+.+.+|... ..++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.++++|
T Consensus 464 ~~~~~p~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L---------------- 525 (968)
T PLN00113 464 FFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL---------------- 525 (968)
T ss_pred eeeecCccc--ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC----------------
Confidence 766666543 25677778888777777777777777788888888887777777766665555
Q ss_pred eecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCc
Q 047203 561 VLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPP 640 (698)
Q Consensus 561 ~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~ 640 (698)
++|++++|.+++..|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|.
T Consensus 526 ----------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 526 ----------------VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ----------------CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 6778888888777887888888888888888888877888888888888888888888777775
Q ss_pred CccCCCCCCeEeccccee
Q 047203 641 SMVSLTFMNHLNLSYNNL 658 (698)
Q Consensus 641 ~l~~l~~L~~L~l~~n~~ 658 (698)
. .....+....+.+|+.
T Consensus 590 ~-~~~~~~~~~~~~~n~~ 606 (968)
T PLN00113 590 T-GAFLAINASAVAGNID 606 (968)
T ss_pred c-chhcccChhhhcCCcc
Confidence 3 3344455555666653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-36 Score=292.60 Aligned_cols=387 Identities=26% Similarity=0.301 Sum_probs=259.5
Q ss_pred CcEEECCCCCCCCCCCccccCCC--CCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEEe
Q 047203 30 LQVLDLSNNGFNSKIPHWLFNIT--RLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLK 107 (698)
Q Consensus 30 L~~L~L~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 107 (698)
-+.||.++..+..+.-..+.... .-+.|++++|.+..+-+..|.++++|+.+++..|.+ ...|.......+|+.|+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~L--t~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNEL--TRIPRFGHESGHLEKLD 131 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchh--hhcccccccccceeEEe
Confidence 56788888888754334444433 445699999999999999999999999999999985 46677777777899999
Q ss_pred CcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeecc
Q 047203 108 LSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLS 187 (698)
Q Consensus 108 l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 187 (698)
|.+|.|.++..+.++.+. .|+.||++.|.|+.+....|..-.++++|++++|+|+....+.|..+.+|-+|.++
T Consensus 132 L~~N~I~sv~se~L~~l~------alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALP------ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eeccccccccHHHHHhHh------hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 999999999888888777 79999999999998888889888999999999999999988999999999999999
Q ss_pred CcccCccc-cccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEecccc
Q 047203 188 SNQMNGFP-ESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQ 266 (698)
Q Consensus 188 ~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 266 (698)
+|.++.+| ..|+++++|+.|++..|.+.. .....|+++++|+.+.+.. +.
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~iri-ve~ltFqgL~Sl~nlklqr----------------------------N~ 256 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRI-VEGLTFQGLPSLQNLKLQR----------------------------ND 256 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceee-ehhhhhcCchhhhhhhhhh----------------------------cC
Confidence 99999987 568889999999999998763 3344677777777666654 33
Q ss_pred CCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCCCCCc
Q 047203 267 LGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLW 346 (698)
Q Consensus 267 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 346 (698)
+.......|..+.++++|++..|++......++++. .+|+.|+++.
T Consensus 257 I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL-t~L~~L~lS~--------------------------------- 302 (873)
T KOG4194|consen 257 ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL-TSLEQLDLSY--------------------------------- 302 (873)
T ss_pred cccccCcceeeecccceeecccchhhhhhccccccc-chhhhhccch---------------------------------
Confidence 333333445555566666666655554333333222 2222222222
Q ss_pred ccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEE
Q 047203 347 SFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYIL 426 (698)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 426 (698)
|.+.+.-.+.+ ...++|++|++++|+++....++|..+..|++|.++.|.+.......|..+.+|++|
T Consensus 303 -----------NaI~rih~d~W-sftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 303 -----------NAIQRIHIDSW-SFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred -----------hhhheeecchh-hhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 22221112221 225566666666666665555566666666666666666554444455556666666
Q ss_pred EcccCccccc---cCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEc
Q 047203 427 DMSNNTLSGE---IPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRL 501 (698)
Q Consensus 427 ~L~~n~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 501 (698)
+++.|.++.. ....|..+++|+.|.+.+|++..+...+|.++++|+.|+|.+|.|. .+....|..+ .|+.|.+
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Naia-SIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIA-SIQPNAFEPM-ELKELVM 446 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcce-eecccccccc-hhhhhhh
Confidence 6666655422 2233445555555555555555444455555555555555555555 3433334323 5555544
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-36 Score=295.64 Aligned_cols=422 Identities=21% Similarity=0.223 Sum_probs=293.6
Q ss_pred cEEEccCceeeecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccc
Q 047203 158 RYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKL 237 (698)
Q Consensus 158 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 237 (698)
+.|++++|++....+..|.++++|+++++.+|.++.+|.......+++.|++.+|.+...... .+..++.|+.+++
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDL--- 156 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDL--- 156 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHH-HHHhHhhhhhhhh---
Confidence 446666666665555556666666666666666666666666666666666666665533222 2332322222222
Q ss_pred cccceeeeecCCCccCCcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEecccccc
Q 047203 238 SENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELS 317 (698)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 317 (698)
+.+.+.......|..-.++++|++++|+|++.....|...
T Consensus 157 -------------------------SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~l--------------- 196 (873)
T KOG4194|consen 157 -------------------------SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSL--------------- 196 (873)
T ss_pred -------------------------hhchhhcccCCCCCCCCCceEEeecccccccccccccccc---------------
Confidence 2223332223334444555666666666554444333322
Q ss_pred ccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCcc
Q 047203 318 GRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQ 397 (698)
Q Consensus 318 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 397 (698)
.+|..|.+++|.++ .+|...|..+++|+.|++..|++.......|.+++
T Consensus 197 ------------------------------nsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~ 245 (873)
T KOG4194|consen 197 ------------------------------NSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLP 245 (873)
T ss_pred ------------------------------chheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCch
Confidence 14445555555554 56666777799999999999999866677899999
Q ss_pred CCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcC
Q 047203 398 QLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLG 477 (698)
Q Consensus 398 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 477 (698)
+|+.|.+..|++.....++|..+.++++|+++.|++.....+++.++++|+.|+++.|.|..+.++++..+++|++|+|+
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 99999999999997777899999999999999999998888889999999999999999988888999999999999999
Q ss_pred CCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccc
Q 047203 478 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGS 557 (698)
Q Consensus 478 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~ 557 (698)
+|+++ .+++..+..+..|++|++++|.+.......|..+.+|++|++++|.+...+.+.-
T Consensus 326 ~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa------------------- 385 (873)
T KOG4194|consen 326 SNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAA------------------- 385 (873)
T ss_pred ccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecch-------------------
Confidence 99999 8888888889999999999999986666688999999999999998875433221
Q ss_pred eEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccc-
Q 047203 558 LQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSG- 636 (698)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~- 636 (698)
..+..+++|+.|++-+|.+..+.-.+|.++.+|+.|+|.+|.|..+.+++|..+ .|++|.+..-.+.-
T Consensus 386 ----------~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 386 ----------VAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCD 454 (873)
T ss_pred ----------hhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEe
Confidence 124446777888888888887777888888888888888888888888888887 88888877554441
Q ss_pred cCCcCccCCCCCCeEecccceeeecCCCCCccccCCCCccccCCC--CCcCCCCCCC
Q 047203 637 SIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYEGNL--ALCGDPLPER 691 (698)
Q Consensus 637 ~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 691 (698)
....||++ .-.....-....-+.++|..|...+|+.-+. -.|.+-.+.|
T Consensus 455 Cql~Wl~q------Wl~~~~lq~sv~a~CayPe~Lad~~i~svd~~~lvC~Dspkpq 505 (873)
T KOG4194|consen 455 CQLKWLAQ------WLYRRKLQSSVIAKCAYPEPLADQSIVSVDTANLVCDDSPKPQ 505 (873)
T ss_pred ccHHHHHH------HHHhcccccceeeeccCCcccccceeEeechhhceecCCCCcc
Confidence 11122221 0011111123335667788887776543322 2266544443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.4e-36 Score=281.87 Aligned_cols=480 Identities=27% Similarity=0.371 Sum_probs=301.0
Q ss_pred CCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEEe
Q 047203 28 TSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLK 107 (698)
Q Consensus 28 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 107 (698)
..+..+.+++|.+... .+.+.++..|.+|++++|... .+|.+++.+..++.+++++|++ ..+|..+..+.+|++++
T Consensus 45 v~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l--s~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL--SELPEQIGSLISLVKLD 120 (565)
T ss_pred cchhhhhhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH--hhccHHHhhhhhhhhhh
Confidence 4577788888888754 444778888888888888777 6777888888888888888875 46778888888888888
Q ss_pred CcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeecc
Q 047203 108 LSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLS 187 (698)
Q Consensus 108 l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 187 (698)
++.|.+.....+..... .++.++..+|.+. ..|+++..+.++..+++.+|.+....|. .-.++.|++|+..
T Consensus 121 ~s~n~~~el~~~i~~~~-------~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~ 191 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLL-------DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCN 191 (565)
T ss_pred ccccceeecCchHHHHh-------hhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccc
Confidence 88887765443322222 3666666777666 5566666667777777777776633333 3336777777777
Q ss_pred CcccCccccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEeccccC
Q 047203 188 SNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQL 267 (698)
Q Consensus 188 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 267 (698)
.|-++.+|+.++.+..|..|++..|++.. .
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~~-l------------------------------------------------- 221 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRRNKIRF-L------------------------------------------------- 221 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhhccccc-C-------------------------------------------------
Confidence 77777777777777777777777766542 1
Q ss_pred CccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCCCCCcc
Q 047203 268 GPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWS 347 (698)
Q Consensus 268 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~ 347 (698)
| .|.+|..|++++++.|++.- .++....-.+
T Consensus 222 ----P-ef~gcs~L~Elh~g~N~i~~-lpae~~~~L~------------------------------------------- 252 (565)
T KOG0472|consen 222 ----P-EFPGCSLLKELHVGENQIEM-LPAEHLKHLN------------------------------------------- 252 (565)
T ss_pred ----C-CCCccHHHHHHHhcccHHHh-hHHHHhcccc-------------------------------------------
Confidence 1 23334444444444444431 1111111111
Q ss_pred cCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCC--CCccE
Q 047203 348 FNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNI--SSLYI 425 (698)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~ 425 (698)
++..|++.+|++. ..|+..+- +.+|+.||+++|.++ ..+..++++ .|+.|.+.+|.+.+.-.+.++.- .-|++
T Consensus 253 -~l~vLDLRdNklk-e~Pde~cl-LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKy 327 (565)
T KOG0472|consen 253 -SLLVLDLRDNKLK-EVPDEICL-LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKY 327 (565)
T ss_pred -cceeeeccccccc-cCchHHHH-hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHH
Confidence 2333333333333 44555443 677888888888777 355567777 77888888877653221111110 01111
Q ss_pred EE-------cccCcccc----c-cCc---cccccCCCcEEEccCCeeeeeCCC-CCCCC--CCCCEEEcCCCcCcccCch
Q 047203 426 LD-------MSNNTLSG----E-IPD---SIGCLLSVRFLILCNNHISGEVPP-SLKNC--SMMDSLDLGDNQLSGNIPA 487 (698)
Q Consensus 426 L~-------L~~n~~~~----~-~~~---~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~--~~L~~L~L~~n~~~~~~~~ 487 (698)
|. ++...-.. . .+. ......+.+.|++++-+++ ..|. .|..- .-....+++.|++. ++|.
T Consensus 328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk 405 (565)
T KOG0472|consen 328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPK 405 (565)
T ss_pred HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhh
Confidence 10 11100000 0 000 1122345666666666665 3333 22211 12556777777776 6666
Q ss_pred hhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccce
Q 047203 488 WIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQY 567 (698)
Q Consensus 488 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 567 (698)
.+.. +..+.+.-+..++..+..|..+..+++|..|++++|.+- .+|..++.+..|
T Consensus 406 ~L~~-lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~L----------------------- 460 (565)
T KOG0472|consen 406 RLVE-LKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRL----------------------- 460 (565)
T ss_pred hhHH-HHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhh-----------------------
Confidence 6544 444443333333334477777888888888888887765 344444444444
Q ss_pred eeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCC
Q 047203 568 VFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTF 647 (698)
Q Consensus 568 ~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~ 647 (698)
+.++++.|++. ..|.++.....|+.+-.++|.+...-+++++++..|..||+.+|.+. .+|..+.+|++
T Consensus 461 ---------q~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnmtn 529 (565)
T KOG0472|consen 461 ---------QTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTN 529 (565)
T ss_pred ---------heecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccc
Confidence 88999999887 88888888888888888889998777777999999999999999988 66778999999
Q ss_pred CCeEecccceeeecCCC
Q 047203 648 MNHLNLSYNNLSGEIPK 664 (698)
Q Consensus 648 L~~L~l~~n~~~~~~p~ 664 (698)
|++|.+++||+. .|.
T Consensus 530 L~hLeL~gNpfr--~Pr 544 (565)
T KOG0472|consen 530 LRHLELDGNPFR--QPR 544 (565)
T ss_pred eeEEEecCCccC--CCH
Confidence 999999999998 553
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.1e-36 Score=282.12 Aligned_cols=488 Identities=26% Similarity=0.386 Sum_probs=372.9
Q ss_pred ceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECC
Q 047203 5 LVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLT 84 (698)
Q Consensus 5 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 84 (698)
+..+.+++|.+..... .+.++..+.++++++|... .+|.+++.+..++.|+.++|.+. .+|..+..+.+|++++++
T Consensus 47 l~~lils~N~l~~l~~--dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLRE--DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred hhhhhhccCchhhccH--hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4567788888776665 6678899999999999998 57888999999999999999988 789999999999999999
Q ss_pred CCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccC
Q 047203 85 GNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWD 164 (698)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 164 (698)
+|.+ ...+..++.+-.|..++..+|++.+..++.+... ++..+++.+|.+....++.+. |+.|+++|...
T Consensus 123 ~n~~--~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~-------~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~ 192 (565)
T KOG0472|consen 123 SNEL--KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLS-------KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNS 192 (565)
T ss_pred ccce--eecCchHHHHhhhhhhhccccccccCchHHHHHH-------HHHHhhccccchhhCCHHHHH-HHHHHhcccch
Confidence 9986 5678899999999999999999987765544322 588999999999855555555 99999999999
Q ss_pred ceeeecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccceee
Q 047203 165 NSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLI 244 (698)
Q Consensus 165 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 244 (698)
|.+. .+|..++.+.+|..|++++|++..+| .|..+..|++++++.|.+. ..+.....+++++..+++.+ ...
T Consensus 193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRd-----Nkl 264 (565)
T KOG0472|consen 193 NLLE-TLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRD-----NKL 264 (565)
T ss_pred hhhh-cCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccc-----ccc
Confidence 8876 88888999999999999999999998 8999999999999999875 45555677999999999987 667
Q ss_pred eecCCCccCCcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCchhhh----hccCCcEEEeccccccccC
Q 047203 245 FNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQ----LDLALDELDVGSNELSGRI 320 (698)
Q Consensus 245 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~l~~~~ 320 (698)
...+++.+...+++.|+++++.++ ..|..++++ +|+.|-+.||++...-.+.+.. ....|+. .+.+..+...
T Consensus 265 ke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs-~~~~dglS~s- 340 (565)
T KOG0472|consen 265 KEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS-KIKDDGLSQS- 340 (565)
T ss_pred ccCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH-hhccCCCCCC-
Confidence 778888888888999999999876 567778998 9999999999876432111111 1111111 0111111100
Q ss_pred CCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCC--CCCCEEEccCCcCCCCCCccccCccC
Q 047203 321 PNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKI--PFLTDLDISFNSLNGSVPKSIGNLQQ 398 (698)
Q Consensus 321 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~ 398 (698)
.-.+-...+.....+.. .....+.+.|++++-+++ .+|..+|..- .-.+.++++.|++. .++..+..+..
T Consensus 341 ----e~~~e~~~t~~~~~~~~--~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lke 412 (565)
T KOG0472|consen 341 ----EGGTETAMTLPSESFPD--IYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKE 412 (565)
T ss_pred ----cccccccCCCCCCcccc--hhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHH
Confidence 00000000100000000 001236778888887777 6777776522 23788999999887 45555555555
Q ss_pred CcEE-EeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcC
Q 047203 399 LLTL-VISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLG 477 (698)
Q Consensus 399 L~~L-~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 477 (698)
+.+. .+++|.+. ..|..++.+++|..|++++|.+. ..|..++.+..|+.|+++.|++. ..|..+.....++.+-.+
T Consensus 413 lvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas 489 (565)
T KOG0472|consen 413 LVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLAS 489 (565)
T ss_pred HHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhc
Confidence 5554 44555554 77888889999999999999887 45667778888999999999987 677777777788888888
Q ss_pred CCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCc
Q 047203 478 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLS 531 (698)
Q Consensus 478 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (698)
+|++. .++..-..++.+|.+|++.+|.+. .+|+.++++++|++|++.+|++.
T Consensus 490 ~nqi~-~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 490 NNQIG-SVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred ccccc-ccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 89987 777765556999999999999988 88999999999999999999987
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2.6e-32 Score=281.98 Aligned_cols=504 Identities=27% Similarity=0.378 Sum_probs=250.4
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCC
Q 047203 8 LHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNS 87 (698)
Q Consensus 8 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 87 (698)
+|.+++.+.-+|. -+.....+..|+++.|.+...--+++.+..+|+.|++++|.+. ..|..+..+.+|+.|+++.|.
T Consensus 3 vd~s~~~l~~ip~--~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLELIPE--QILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCcccch--hhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence 4455555554443 2223333556666666543222233344445666666655555 355555566666666666655
Q ss_pred CCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCcee
Q 047203 88 FLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSF 167 (698)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~ 167 (698)
+ ...|..+.++.+|++|.|.+|.+... +..+..+. +|+.|++++|.+. ..|..+..+..++.++.++|..
T Consensus 80 i--~~vp~s~~~~~~l~~lnL~~n~l~~l-P~~~~~lk------nl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~ 149 (1081)
T KOG0618|consen 80 I--RSVPSSCSNMRNLQYLNLKNNRLQSL-PASISELK------NLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEK 149 (1081)
T ss_pred H--hhCchhhhhhhcchhheeccchhhcC-chhHHhhh------cccccccchhccC-CCchhHHhhhHHHHHhhhcchh
Confidence 4 23445555555666666655544422 11222222 4555555555544 4455555555555555555521
Q ss_pred eecCCCCCcCcccCCeeeccCcccCc-cccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeee
Q 047203 168 VGSIPPSIGNLTFLKELYLSSNQMNG-FPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFN 246 (698)
Q Consensus 168 ~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 246 (698)
... ++... ++++++..+.+.. ++..+..+.+ .+++.+|.+. .. .+..+..|+.+....
T Consensus 150 ~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~r---------- 208 (1081)
T KOG0618|consen 150 IQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCER---------- 208 (1081)
T ss_pred hhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhh----------
Confidence 111 11111 5555555555444 4444444444 4666665543 11 222333333332221
Q ss_pred cCCCccCCcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccCCCCcCC
Q 047203 247 ISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGF 326 (698)
Q Consensus 247 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 326 (698)
..|..+++.+ ++++.|+.+.|.++.. ...+.
T Consensus 209 --------------------------------n~ls~l~~~g---------------~~l~~L~a~~n~l~~~-~~~p~- 239 (1081)
T KOG0618|consen 209 --------------------------------NQLSELEISG---------------PSLTALYADHNPLTTL-DVHPV- 239 (1081)
T ss_pred --------------------------------cccceEEecC---------------cchheeeeccCcceee-ccccc-
Confidence 1122222222 4555555555555411 11111
Q ss_pred CCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeC
Q 047203 327 RFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISN 406 (698)
Q Consensus 327 ~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 406 (698)
+.+++.++++++.+. .+| .+...+++|+.++..+|++. ..+..+....+|+.|.+..
T Consensus 240 --------------------p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 240 --------------------PLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred --------------------cccceeeecchhhhh-cch-HHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhh
Confidence 234555555555554 344 33344666666666666664 3333444456666666666
Q ss_pred CccccCcCccCCCCCCccEEEcccCccccccCccccccCC-CcEEEccCCeeeeeCCC-CCCCCCCCCEEEcCCCcCccc
Q 047203 407 NNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLS-VRFLILCNNHISGEVPP-SLKNCSMMDSLDLGDNQLSGN 484 (698)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~L~~n~~~~~ 484 (698)
|.+. .+|.....+..|++|++..|++.......+..... |+.|+.+.+.+. ..|. .=..++.|+.|.+.+|.+++.
T Consensus 297 nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 297 NELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCccccc
Confidence 6666 34444555666666666666665433322332222 555555555544 2221 112344566666666666543
Q ss_pred CchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecc
Q 047203 485 IPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKG 564 (698)
Q Consensus 485 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 564 (698)
.-..+ .+.++|+.|++++|.+.......+.+++.|++|++++|.++ .+|....++..|
T Consensus 375 c~p~l-~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L-------------------- 432 (1081)
T KOG0618|consen 375 CFPVL-VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL-------------------- 432 (1081)
T ss_pred chhhh-ccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh--------------------
Confidence 33222 23666666666666665444445666666666666666655 334555555555
Q ss_pred cceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCccccc-CCccccCCCCCCeEeccCCcccccCCcCcc
Q 047203 565 TQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGK-IPTQIGKLEWLESLDLSKNKLSGSIPPSMV 643 (698)
Q Consensus 565 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~ 643 (698)
++|..-+|.+. .+| .+.++++|+.+|++.|.++.. +|+.... +.||+||+++|.-....-..|.
T Consensus 433 ------------~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~ 497 (1081)
T KOG0618|consen 433 ------------HTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLK 497 (1081)
T ss_pred ------------HHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhH
Confidence 33444444444 445 556666666666666665532 2333222 5666666666665545555555
Q ss_pred CCCCCCeEecccc
Q 047203 644 SLTFMNHLNLSYN 656 (698)
Q Consensus 644 ~l~~L~~L~l~~n 656 (698)
.+.++...++.-+
T Consensus 498 ~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 498 VLKSLSQMDITLN 510 (1081)
T ss_pred HhhhhhheecccC
Confidence 5566555555555
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-32 Score=284.59 Aligned_cols=483 Identities=29% Similarity=0.378 Sum_probs=322.8
Q ss_pred EECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEEeCcCcc
Q 047203 33 LDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNS 112 (698)
Q Consensus 33 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 112 (698)
+|.+++.+. .+|..+..-.+++.|++..|-.....-+.+.+.-+|+.|++++|.+ ...|..+..+.+|+.|+++.|.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~--~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI--SSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccccc--ccCCchhhhHHHHhhcccchhh
Confidence 456666665 4566666656677777777765543344455555677777777764 4556666666666666666665
Q ss_pred CCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeeccCcccC
Q 047203 113 ISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMN 192 (698)
Q Consensus 113 ~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 192 (698)
+. ..|....++.+|+++.|..|... ..|..+..+++|++|+++.|++.
T Consensus 80 i~-------------------------------~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 80 IR-------------------------------SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG 127 (1081)
T ss_pred Hh-------------------------------hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC
Confidence 44 33455666677777777766655 66767777777777777777777
Q ss_pred ccccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEeccccCCccCC
Q 047203 193 GFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFP 272 (698)
Q Consensus 193 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 272 (698)
.+|..+..+..+..+..++|......+ .. .++.+++..+.+...++
T Consensus 128 ~~Pl~i~~lt~~~~~~~s~N~~~~~lg-----~~-----------------------------~ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 128 PIPLVIEVLTAEEELAASNNEKIQRLG-----QT-----------------------------SIKKLDLRLNVLGGSFL 173 (1081)
T ss_pred CCchhHHhhhHHHHHhhhcchhhhhhc-----cc-----------------------------cchhhhhhhhhcccchh
Confidence 777777777777777777762111111 10 02222223333333333
Q ss_pred ccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccE
Q 047203 273 TWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTK 352 (698)
Q Consensus 273 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~ 352 (698)
.....+.. .+++++|.+..... ...+.++.+....|++.. +.+ ..++++.
T Consensus 174 ~~i~~l~~--~ldLr~N~~~~~dl----s~~~~l~~l~c~rn~ls~-------------l~~-----------~g~~l~~ 223 (1081)
T KOG0618|consen 174 IDIYNLTH--QLDLRYNEMEVLDL----SNLANLEVLHCERNQLSE-------------LEI-----------SGPSLTA 223 (1081)
T ss_pred cchhhhhe--eeecccchhhhhhh----hhccchhhhhhhhcccce-------------EEe-----------cCcchhe
Confidence 33333333 56777766551111 111344444444444331 111 1346777
Q ss_pred EEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCc
Q 047203 353 LYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNT 432 (698)
Q Consensus 353 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 432 (698)
|+.++|.+....... ...+|+.++++.+++.. ++..++.+.+|+.+.+.+|.+. ..|.......+|+.|++.+|.
T Consensus 224 L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 224 LYADHNPLTTLDVHP---VPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred eeeccCcceeecccc---ccccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhh
Confidence 777777776222221 25678888888888874 4467777888888888888886 556666677888888888888
Q ss_pred cccccCccccccCCCcEEEccCCeeeeeCCCCC-CCCCC-CCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccC
Q 047203 433 LSGEIPDSIGCLLSVRFLILCNNHISGEVPPSL-KNCSM-MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 510 (698)
Q Consensus 433 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~-L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 510 (698)
+.. ++.......+|++|++..|.+. ..|+.+ ..... |+.++.+.+++. ..|..-....+.|+.|++.+|.+++..
T Consensus 299 l~y-ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c 375 (1081)
T KOG0618|consen 299 LEY-IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSC 375 (1081)
T ss_pred hhh-CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccc
Confidence 874 4445666788888888888886 455432 33333 677777777776 555444444678999999999998888
Q ss_pred ChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccC
Q 047203 511 PPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEM 590 (698)
Q Consensus 511 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 590 (698)
.+.+.+...|+.|++++|.+..+....+.++..| ++|++|+|+++ .+
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~L--------------------------------eeL~LSGNkL~-~L 422 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEEL--------------------------------EELNLSGNKLT-TL 422 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHh--------------------------------HHHhcccchhh-hh
Confidence 8888999999999999998887666666555555 89999999998 77
Q ss_pred ChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCccccc-CCcCccCCCCCCeEeccccee
Q 047203 591 PVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGS-IPPSMVSLTFMNHLNLSYNNL 658 (698)
Q Consensus 591 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~ 658 (698)
|..+..+..|+.|...+|.+. ..| .+.+++.|+.+|++.|++... +|+...+ ++|+.||+++|..
T Consensus 423 p~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 423 PDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 789999999999999999998 777 678899999999999999854 4444433 8999999999984
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=3.9e-30 Score=254.15 Aligned_cols=252 Identities=30% Similarity=0.408 Sum_probs=149.2
Q ss_pred CCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccc-cccCcccc
Q 047203 364 IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLS-GEIPDSIG 442 (698)
Q Consensus 364 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~ 442 (698)
+|..++.++..|-.||+++|++. .++.....+..|++|.+++|.+.-.--..+..+++|+.|.+++.+-+ .-+|.++.
T Consensus 141 IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 141 IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred CCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence 33333333444444455555444 23333444455555555555443211122334444555555544321 22344455
Q ss_pred ccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCE
Q 047203 443 CLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHI 522 (698)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 522 (698)
.+.+|..++++.|++. ..|..+..+++|+.|++++|+|+ ++...... -.+|++|+++.|.++ .+|..+.+++.|+.
T Consensus 220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~-W~~lEtLNlSrNQLt-~LP~avcKL~kL~k 295 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGE-WENLETLNLSRNQLT-VLPDAVCKLTKLTK 295 (1255)
T ss_pred hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHH-Hhhhhhhccccchhc-cchHHHhhhHHHHH
Confidence 5555555555555554 55555555566666666666555 34333222 335666666666665 56666666666666
Q ss_pred EECCCCcCcc-CCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCC
Q 047203 523 LDLSHNNLSG-FIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLG 601 (698)
Q Consensus 523 L~l~~~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~ 601 (698)
|.+.+|+++- -+|.+++.+.+| +++..++|.+. .+|+.+++|..|+
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~L--------------------------------evf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQL--------------------------------EVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred HHhccCcccccCCccchhhhhhh--------------------------------HHHHhhccccc-cCchhhhhhHHHH
Confidence 6666666652 356666655555 55666666665 8899999999999
Q ss_pred EEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCcc-CCCCCCeEeccc
Q 047203 602 TLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMV-SLTFMNHLNLSY 655 (698)
Q Consensus 602 ~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~ 655 (698)
.|.|+.|++. ++|+++.-++-|+.||+.+|....-.| ... .-++|+.-+|..
T Consensus 343 kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP-KP~da~~~lefYNIDF 395 (1255)
T KOG0444|consen 343 KLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP-KPNDARKKLEFYNIDF 395 (1255)
T ss_pred Hhccccccee-echhhhhhcCCcceeeccCCcCccCCC-Ccchhhhcceeeecce
Confidence 9999999988 789999999999999999998884433 332 226777766654
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=8.5e-30 Score=251.80 Aligned_cols=274 Identities=25% Similarity=0.367 Sum_probs=229.3
Q ss_pred ccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcc
Q 047203 350 VTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMS 429 (698)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 429 (698)
|+.|++++|++. ..|..+ ..-+++-.|++++|+|..+....|-+++.|-.|++++|.+. .+|-....+..|++|+++
T Consensus 105 Lt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 105 LTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred ceeeecchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcC
Confidence 333444444433 344443 23667889999999999777777888999999999999998 455567889999999999
Q ss_pred cCccccccCccccccCCCcEEEccCCeee-eeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccc
Q 047203 430 NNTLSGEIPDSIGCLLSVRFLILCNNHIS-GEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 508 (698)
Q Consensus 430 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 508 (698)
+|++...-...+..+.+|+.|.+++.+-+ ...|.++.++.+|..++++.|.+. .+|..+.. +++|+.|++++|+++
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~-l~~LrrLNLS~N~it- 258 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYK-LRNLRRLNLSGNKIT- 258 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhh-hhhhheeccCcCcee-
Confidence 99987665566777888999999987654 357889999999999999999998 89999887 999999999999998
Q ss_pred cCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCc
Q 047203 509 TIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSG 588 (698)
Q Consensus 509 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 588 (698)
.+........+|++|++++|+++ .+|+++..+++| +.|.+.+|+++=
T Consensus 259 eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL--------------------------------~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 259 ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL--------------------------------TKLYANNNKLTF 305 (1255)
T ss_pred eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHH--------------------------------HHHHhccCcccc
Confidence 55556778899999999999987 688888888888 667777787742
Q ss_pred -cCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecCCC
Q 047203 589 -EMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPK 664 (698)
Q Consensus 589 -~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 664 (698)
-+|..++.+.+|+.+..++|++. ..|+++.-|..|+.|.+++|++. .+|+.+.-++-|+.||++.||-.-+=|+
T Consensus 306 eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 306 EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 47888999999999999999987 89999999999999999999998 8999999999999999999987765554
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=6e-22 Score=230.38 Aligned_cols=348 Identities=20% Similarity=0.186 Sum_probs=232.6
Q ss_pred CCccccCCCCccEEEccCCcCc------CCCCchhhhhccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCCCC
Q 047203 271 FPTWLRNQTELTTLVLNNARIS------DTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLP 344 (698)
Q Consensus 271 ~~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~ 344 (698)
.+.+|..+.+|+.|.+..+... ...+..+...+..|+.|++.++.+. ..|..+...+|+.+++.++.+.....
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFRPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCCccCCcEEECcCcccccccc
Confidence 3456888999999988765422 2344555555667899999888765 55666677788888888877654321
Q ss_pred --CcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCC
Q 047203 345 --LWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISS 422 (698)
Q Consensus 345 --~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 422 (698)
..+++|+.++++++.....+|. ...+++|+.|++++|.....++..+.++++|+.|++++|...+.+|..+ ++++
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 2355788888877765545554 2347788888888876655666677777888888888776444555443 5778
Q ss_pred ccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcc------cCchhhhhcCCCC
Q 047203 423 LYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG------NIPAWIGESMPSL 496 (698)
Q Consensus 423 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~------~~~~~~~~~l~~L 496 (698)
|++|++++|......+. ...+|++|+++++.+. ..|..+ .+++|++|.+.++.... .++......+++|
T Consensus 706 L~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 88888888765433332 2357778888877765 445443 46777777776643210 1112222235678
Q ss_pred cEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeecccccc
Q 047203 497 SILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLV 576 (698)
Q Consensus 497 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 576 (698)
+.|++++|.....+|..++++++|++|++++|...+.+|... + +++|
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~--------------------------------L~sL 827 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-N--------------------------------LESL 827 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-C--------------------------------cccc
Confidence 888888887666777778888888888888876555555443 3 3445
Q ss_pred CeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccc
Q 047203 577 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 656 (698)
Q Consensus 577 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 656 (698)
+.|++++|.....+|.. .++|++|++++|.+. .+|.++..+++|++|++++|+....+|..+.++++|+.+++++|
T Consensus 828 ~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 828 ESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 77777777655444432 357778888888777 66777777888888888887766677777777888888888888
Q ss_pred eeeecCCC
Q 047203 657 NLSGEIPK 664 (698)
Q Consensus 657 ~~~~~~p~ 664 (698)
+....++-
T Consensus 904 ~~L~~~~l 911 (1153)
T PLN03210 904 GALTEASW 911 (1153)
T ss_pred cccccccC
Confidence 76655443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=8.4e-21 Score=220.86 Aligned_cols=344 Identities=19% Similarity=0.256 Sum_probs=215.7
Q ss_pred CCccccCCCCCcEEEccCce------eeecCCCCCcCcc-cCCeeeccCcccCccccccCCCCCCcEEEccCCeeeeecC
Q 047203 147 LPNSLGYLKNLRYLELWDNS------FVGSIPPSIGNLT-FLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIIT 219 (698)
Q Consensus 147 ~~~~~~~l~~L~~L~l~~~~------~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 219 (698)
...+|.+|++|+.|.+..+. +....|..+..++ +|+.|.+.++.++.+|..+ ...+|+.|++.++.+.....
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~ 628 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWD 628 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccc
Confidence 34566777777777775442 1223455555553 5777777777777777666 45777777777776653221
Q ss_pred chhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCchh
Q 047203 220 ETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWF 299 (698)
Q Consensus 220 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 299 (698)
.+..+++|+.+++..+.. ....+.+...++|+.|++.+|.....+|..+..+++|+.|++++|......
T Consensus 629 --~~~~l~~Lk~L~Ls~~~~-----l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L---- 697 (1153)
T PLN03210 629 --GVHSLTGLRNIDLRGSKN-----LKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL---- 697 (1153)
T ss_pred --ccccCCCCCEEECCCCCC-----cCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc----
Confidence 245566666666654211 111112333455666666666555556666666666666666665433333
Q ss_pred hhhccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEE
Q 047203 300 WQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLD 379 (698)
Q Consensus 300 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 379 (698)
|.....++|+.+++++|......+....+|+.|+++++.+. .+|..+ .+++|++|.
T Consensus 698 ---------------------p~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~ 753 (1153)
T PLN03210 698 ---------------------PTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNL--RLENLDELI 753 (1153)
T ss_pred ---------------------CCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccc--ccccccccc
Confidence 33333444555555555444444444557777777777765 444433 367777777
Q ss_pred ccCCcCCC-------CCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEc
Q 047203 380 ISFNSLNG-------SVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLIL 452 (698)
Q Consensus 380 L~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 452 (698)
+.++.... ..+..+..+++|+.|++++|.....+|..+.++++|+.|++++|.....+|..+ .+++|+.|++
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 76643221 111112235688888888887666778788888888888888886544555444 5788888888
Q ss_pred cCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCcc
Q 047203 453 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSG 532 (698)
Q Consensus 453 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 532 (698)
++|......|. ..++|++|++++|.+. .+|..+.. +++|+.|++++|+....++..+..+++|+.+++++|....
T Consensus 833 s~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~-l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 833 SGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEK-FSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CCCCccccccc---cccccCEeECCCCCCc-cChHHHhc-CCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 88865434333 2367888888888887 77776654 8888899888887665677777888888888888886443
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=7.2e-23 Score=192.60 Aligned_cols=268 Identities=24% Similarity=0.286 Sum_probs=186.1
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCC-C
Q 047203 8 LHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG-N 86 (698)
Q Consensus 8 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~ 86 (698)
++.++.+++.+|...+ +....++|..|.|+.+-+++|+.+++||.|||++|.|+.+.|++|.++..|..|-+.+ |
T Consensus 51 VdCr~~GL~eVP~~LP----~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP----PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCcccCC----CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 4566677888888776 5689999999999988889999999999999999999999999999999998888877 6
Q ss_pred CCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCce
Q 047203 87 SFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNS 166 (698)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~ 166 (698)
+ .+..-...|.++..|+.|.+.-|++..+..++|..++ .+..|.+.+|.+..+-...|..+..++++.+..|.
T Consensus 127 k-I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~------~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 127 K-ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP------SLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred c-hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh------hcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 6 4445556799999999999999999999989998888 78899999999886666689999999999998876
Q ss_pred ee------------ecCCCCCcCcccCCeeeccCcccC------------c--------------cc-cccCCCCCCcEE
Q 047203 167 FV------------GSIPPSIGNLTFLKELYLSSNQMN------------G--------------FP-ESFGQLSAIEVL 207 (698)
Q Consensus 167 ~~------------~~~~~~l~~l~~L~~L~l~~~~~~------------~--------------~~-~~l~~l~~L~~L 207 (698)
.. ...|..++...-..-..+.+..+. . .| .-|+.+++|++|
T Consensus 200 ~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~l 279 (498)
T KOG4237|consen 200 FICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKL 279 (498)
T ss_pred cccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEe
Confidence 21 222333333222222222111111 1 11 126677777777
Q ss_pred EccCCeeeeecCchhhcCCCCccEEecccccccceeeeec-CCCccCCcceeEEEeccccCCccCCccccCCCCccEEEc
Q 047203 208 DLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNI-SSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVL 286 (698)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 286 (698)
++++|+++++ .+.+|.+...+++|.+... ....+ ...+.....|+.|++.++.++...|.+|.....|.+|.+
T Consensus 280 nlsnN~i~~i-~~~aFe~~a~l~eL~L~~N-----~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l 353 (498)
T KOG4237|consen 280 NLSNNKITRI-EDGAFEGAAELQELYLTRN-----KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNL 353 (498)
T ss_pred ccCCCccchh-hhhhhcchhhhhhhhcCcc-----hHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeeh
Confidence 7777777653 3446777777777776551 11111 112233444555555555555555555555555555555
Q ss_pred cCCcCc
Q 047203 287 NNARIS 292 (698)
Q Consensus 287 ~~~~~~ 292 (698)
-.|++.
T Consensus 354 ~~Np~~ 359 (498)
T KOG4237|consen 354 LSNPFN 359 (498)
T ss_pred ccCccc
Confidence 555444
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.1e-18 Score=187.77 Aligned_cols=258 Identities=26% Similarity=0.317 Sum_probs=145.3
Q ss_pred eEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccc
Q 047203 331 TVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLS 410 (698)
Q Consensus 331 ~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 410 (698)
.++++.+.+....+..+.+++.|++.+|+++ .+|. .+++|++|++++|+++.. +. ..++|+.|++++|.+.
T Consensus 205 ~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 205 VLNVGESGLTTLPDCLPAHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLT 275 (788)
T ss_pred EEEcCCCCCCcCCcchhcCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcc-cC---cccccceeeccCCchh
Confidence 3444444444333223345566666665555 2332 145666666666665532 21 1355666666666655
Q ss_pred cCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhh
Q 047203 411 GEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG 490 (698)
Q Consensus 411 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 490 (698)
.+|.. .+.|+.|++++|++... +. .+++|+.|++++|.+.+ +|.. ..+|+.|.+++|.+. .+|..
T Consensus 276 -~Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l-- 340 (788)
T PRK15387 276 -HLPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL-- 340 (788)
T ss_pred -hhhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc--
Confidence 22322 24456666666665532 21 23556666666666552 2221 234556666666665 44431
Q ss_pred hcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeee
Q 047203 491 ESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFY 570 (698)
Q Consensus 491 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (698)
+++|+.|++++|++. .+|.. .++|+.|++++|.+.+ +|..
T Consensus 341 --p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l--------------------------------- 380 (788)
T PRK15387 341 --PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL--------------------------------- 380 (788)
T ss_pred --ccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---------------------------------
Confidence 345666666666665 23322 2455666666665542 2211
Q ss_pred ccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCe
Q 047203 571 STLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNH 650 (698)
Q Consensus 571 ~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~ 650 (698)
..+|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|..+ .+|+.|++++|.+. .+|..+.++++|+.
T Consensus 381 --~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~ 449 (788)
T PRK15387 381 --PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETT 449 (788)
T ss_pred --ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCe
Confidence 1234778888888773 4432 257888888888877 455432 46777888888887 67877888888888
Q ss_pred EecccceeeecCC
Q 047203 651 LNLSYNNLSGEIP 663 (698)
Q Consensus 651 L~l~~n~~~~~~p 663 (698)
|+|++|++++..|
T Consensus 450 LdLs~N~Ls~~~~ 462 (788)
T PRK15387 450 VNLEGNPLSERTL 462 (788)
T ss_pred EECCCCCCCchHH
Confidence 8888888876544
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.77 E-value=5.9e-18 Score=182.29 Aligned_cols=245 Identities=25% Similarity=0.311 Sum_probs=162.1
Q ss_pred CCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCC
Q 047203 328 FPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNN 407 (698)
Q Consensus 328 ~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~ 407 (698)
.++.+++++|++.. ++..+++|++|++++|.++ .+|. ..++|+.|++++|.+... +. .+++|+.|++++|
T Consensus 223 ~L~~L~L~~N~Lt~-LP~lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~L-p~---lp~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPALPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCC-CCCCCCCCcEEEecCCccC-cccC----cccccceeeccCCchhhh-hh---chhhcCEEECcCC
Confidence 34444444444443 2233567777777777776 3443 256777888887776532 22 1356778888888
Q ss_pred ccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCch
Q 047203 408 NLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPA 487 (698)
Q Consensus 408 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~ 487 (698)
++.. +|. ..++|++|++++|++... +. ...+|+.|.+++|.++ .+|. -..+|++|++++|++. .+|.
T Consensus 293 ~Lt~-LP~---~p~~L~~LdLS~N~L~~L-p~---lp~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls-~LP~ 359 (788)
T PRK15387 293 QLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLA-SLPT 359 (788)
T ss_pred cccc-ccc---cccccceeECCCCccccC-CC---CcccccccccccCccc-cccc---cccccceEecCCCccC-CCCC
Confidence 7763 333 246788888888877743 22 2346777888888876 3332 1246888888888887 5664
Q ss_pred hhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccce
Q 047203 488 WIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQY 567 (698)
Q Consensus 488 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 567 (698)
. +++|+.|++++|.+. .+|.. .++|+.|++++|.+.+ +|..
T Consensus 360 l----p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l------------------------------ 400 (788)
T PRK15387 360 L----PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL------------------------------ 400 (788)
T ss_pred C----Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc------------------------------
Confidence 2 567888888888877 34433 3578888888888763 2321
Q ss_pred eeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccC
Q 047203 568 VFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVS 644 (698)
Q Consensus 568 ~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~ 644 (698)
.++|+.|++++|.+++ +|... .+|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..|..+..
T Consensus 401 -----~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 401 -----PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred -----ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 1234778888888874 55432 46788889998888 67888888889999999999888776666543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=2.1e-20 Score=176.10 Aligned_cols=311 Identities=21% Similarity=0.260 Sum_probs=215.6
Q ss_pred EECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeC-Cccc
Q 047203 332 VDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISN-NNLS 410 (698)
Q Consensus 332 l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~ 410 (698)
++.++-.+.+.....++....+++..|++. .+|...|..+++|+.|||++|.|+.+.+.+|.+++++.+|.+-+ |+|+
T Consensus 51 VdCr~~GL~eVP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 444555555555566778888999999988 77777777789999999999999888888888888888877666 7888
Q ss_pred cCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCc-hh-
Q 047203 411 GEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIP-AW- 488 (698)
Q Consensus 411 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~-~~- 488 (698)
....+.|.++.+|+.|.+.-|++.-+..+.|..++++..|.+.+|.+..+-..+|+.+.+++.+.+..|++...-. .+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchh
Confidence 6666788888899998888888887777888888888888888888874444578888888888888877331100 00
Q ss_pred ---------hhhcCCCCcEEEccCCcccccCChhh-ccCCCCCEEECCCCcCccCCC-cccccccCCCcCCCCCcccccc
Q 047203 489 ---------IGESMPSLSILRLRSNYFNGTIPPEL-CKLSALHILDLSHNNLSGFIP-SCVGNFSRMKIEPPDSVEYEGS 557 (698)
Q Consensus 489 ---------~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~~~~~~~~~~~~ 557 (698)
.+++..-.....+...++..+.+.-+ ..+.++.+--.+.|...+..| .+
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~c-------------------- 269 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKC-------------------- 269 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHH--------------------
Confidence 00011111111122222221111111 111111111112221111111 11
Q ss_pred eEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCccccc
Q 047203 558 LQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGS 637 (698)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~ 637 (698)
+..+++|+.+++++|.++.+-+.+|.+...+++|.|..|++.......|.++..|+.|++++|+|+..
T Consensus 270 ------------f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 270 ------------FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred ------------HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 44556668888888888888888889999999999999988866678888889999999999999888
Q ss_pred CCcCccCCCCCCeEecccceeee-----------------cCCCCCccccCCCCc
Q 047203 638 IPPSMVSLTFMNHLNLSYNNLSG-----------------EIPKVNQFQSLKDPS 675 (698)
Q Consensus 638 ~~~~l~~l~~L~~L~l~~n~~~~-----------------~~p~~~~~~~~~~~~ 675 (698)
-|..|..+.+|.+|++-.||+-. -.|..+.|.+++.+.
T Consensus 338 ~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~ 392 (498)
T KOG4237|consen 338 APGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIP 392 (498)
T ss_pred ecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhcccc
Confidence 88888889999999998888754 347777777777665
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=7.5e-19 Score=178.28 Aligned_cols=278 Identities=24% Similarity=0.266 Sum_probs=169.1
Q ss_pred EEcccCcccccCCcchhcCCCCCCEEEccCCcCCCC----CCccccCccCCcEEEeeCCcccc------CcCccCCCCCC
Q 047203 353 LYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS----VPKSIGNLQQLLTLVISNNNLSG------EIPQLWSNISS 422 (698)
Q Consensus 353 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~ 422 (698)
|++..+.+.+.....++..++.|++++++++.++.. +...+...++++.+.++++.+.. ..+..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 444444444333334444466677777777776431 22334455667777777766541 12234556778
Q ss_pred ccEEEcccCccccccCccccccCC---CcEEEccCCeeeee----CCCCCCCC-CCCCEEEcCCCcCcccCchh---hhh
Q 047203 423 LYILDMSNNTLSGEIPDSIGCLLS---VRFLILCNNHISGE----VPPSLKNC-SMMDSLDLGDNQLSGNIPAW---IGE 491 (698)
Q Consensus 423 L~~L~L~~n~~~~~~~~~~~~~~~---L~~L~l~~~~~~~~----~~~~l~~~-~~L~~L~L~~n~~~~~~~~~---~~~ 491 (698)
|++|++++|.+....+..+..+.. |++|++++|.+... ....+..+ ++|++|++++|.+++..... .+.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 888888888776444444444443 88888888876521 12234455 77888888888876432221 223
Q ss_pred cCCCCcEEEccCCccccc----CChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccce
Q 047203 492 SMPSLSILRLRSNYFNGT----IPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQY 567 (698)
Q Consensus 492 ~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 567 (698)
.+++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+.....+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~---------------------------- 214 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALA---------------------------- 214 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHH----------------------------
Confidence 366788888888887632 233445567888888888877633221111
Q ss_pred eeeccccccCeEEcCCCcCCccCChhhh-c----cCCCCEEeCCCCcccc----cCCccccCCCCCCeEeccCCccccc-
Q 047203 568 VFYSTLYLVNLMDLSSNNLSGEMPVELT-R----LIHLGTLNLSQNHLVG----KIPTQIGKLEWLESLDLSKNKLSGS- 637 (698)
Q Consensus 568 ~~~~~~~~L~~l~l~~n~~~~~~~~~l~-~----l~~L~~L~l~~n~~~~----~~~~~l~~l~sL~~L~l~~~~~~~~- 637 (698)
..+..+++|+.|++++|.+++.....+. . .+.|++|++++|.+++ .+.+.+..++.|+++++++|.+...
T Consensus 215 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 215 ETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred HHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 0122345668888888887753332222 2 3688888888888863 2334556668888888888888854
Q ss_pred ---CCcCccCC-CCCCeEeccccee
Q 047203 638 ---IPPSMVSL-TFMNHLNLSYNNL 658 (698)
Q Consensus 638 ---~~~~l~~l-~~L~~L~l~~n~~ 658 (698)
.+..+... +.|+++++.+|++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 295 AQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHhhcCCchhhcccCCCCC
Confidence 44444455 7888888888764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=4.8e-17 Score=176.64 Aligned_cols=246 Identities=25% Similarity=0.419 Sum_probs=147.6
Q ss_pred CccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEc
Q 047203 349 NVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDM 428 (698)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 428 (698)
+...|++++++++ .+|..+ .+.++.|++++|+++. ++..+ .++|+.|++++|.+. .+|..+. ++|+.|++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhh--ccCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 3455555555554 344332 3456666666666653 22222 246666666666665 3343332 35667777
Q ss_pred ccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccc
Q 047203 429 SNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 508 (698)
Q Consensus 429 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 508 (698)
++|.+.. +|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|.+.
T Consensus 249 s~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---p~sL~~L~Ls~N~Lt- 317 (754)
T PRK15370 249 SINRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHL---PSGITHLNVQSNSLT- 317 (754)
T ss_pred cCCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccc---hhhHHHHHhcCCccc-
Confidence 7776653 333332 46777777777666 3444432 46777777777766 455433 346777777777776
Q ss_pred cCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCc
Q 047203 509 TIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSG 588 (698)
Q Consensus 509 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 588 (698)
.+|..+ .++|++|++++|.+++ +|..+ +++|+.|++++|.++
T Consensus 318 ~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l----------------------------------~~sL~~L~Ls~N~L~- 359 (754)
T PRK15370 318 ALPETL--PPGLKTLEAGENALTS-LPASL----------------------------------PPELQVLDVSKNQIT- 359 (754)
T ss_pred cCCccc--cccceeccccCCcccc-CChhh----------------------------------cCcccEEECCCCCCC-
Confidence 344333 2567777777777653 23222 134577888888776
Q ss_pred cCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCcc----CCCCCCeEecccceee
Q 047203 589 EMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMV----SLTFMNHLNLSYNNLS 659 (698)
Q Consensus 589 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~----~l~~L~~L~l~~n~~~ 659 (698)
.+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|++. .+|+.+. .++++..|++.+|+++
T Consensus 360 ~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 360 VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4554442 57888888888877 5565554 46888888888877 5555443 3477888888888876
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=5.8e-16 Score=168.27 Aligned_cols=227 Identities=26% Similarity=0.453 Sum_probs=117.6
Q ss_pred ccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEE
Q 047203 347 SFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYIL 426 (698)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 426 (698)
+..++.|++++|.+. .+|..+ +++|++|++++|++.. ++..+ .++|+.|++++|.+. .+|..+. .+|+.|
T Consensus 198 p~~L~~L~Ls~N~Lt-sLP~~l---~~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L 267 (754)
T PRK15370 198 PEQITTLILDNNELK-SLPENL---QGNIKTLYANSNQLTS-IPATL--PDTIQEMELSINRIT-ELPERLP--SALQSL 267 (754)
T ss_pred ccCCcEEEecCCCCC-cCChhh---ccCCCEEECCCCcccc-CChhh--hccccEEECcCCccC-cCChhHh--CCCCEE
Confidence 345555555555555 334333 2456666666665553 22222 235666666666655 3333332 356666
Q ss_pred EcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcc
Q 047203 427 DMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYF 506 (698)
Q Consensus 427 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 506 (698)
++++|++.. +|..+. ++|+.|++++|.++ ..|..+. ++|+.|++++|.+. .+|..+ +++|+.|++++|.+
T Consensus 268 ~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L 337 (754)
T PRK15370 268 DLFHNKISC-LPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENAL 337 (754)
T ss_pred ECcCCccCc-cccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcc
Confidence 666666553 333222 45666666666655 2333221 35666666666665 444432 34666666666666
Q ss_pred cccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcC
Q 047203 507 NGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNL 586 (698)
Q Consensus 507 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 586 (698)
++ +|..+ .++|+.|++++|.+.. +|..+ .+.|+.|++++|.+
T Consensus 338 t~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~l----------------------------------p~~L~~LdLs~N~L 379 (754)
T PRK15370 338 TS-LPASL--PPELQVLDVSKNQITV-LPETL----------------------------------PPTITTLDVSRNAL 379 (754)
T ss_pred cc-CChhh--cCcccEEECCCCCCCc-CChhh----------------------------------cCCcCEEECCCCcC
Confidence 53 44433 2566666666666542 22211 12335666666666
Q ss_pred CccCChhhhccCCCCEEeCCCCcccccCCcccc----CCCCCCeEeccCCccc
Q 047203 587 SGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIG----KLEWLESLDLSKNKLS 635 (698)
Q Consensus 587 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~----~l~sL~~L~l~~~~~~ 635 (698)
+ .+|..+. .+|+.|++++|++. .+|+.+. .++.+..|++.+|.+.
T Consensus 380 t-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 380 T-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred C-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5 3343333 24666666666665 4444332 2356666666666665
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=2.2e-17 Score=167.45 Aligned_cols=256 Identities=21% Similarity=0.225 Sum_probs=181.2
Q ss_pred EEEccCCcCCC-CCCccccCccCCcEEEeeCCccccC----cCccCCCCCCccEEEcccCcccc------ccCccccccC
Q 047203 377 DLDISFNSLNG-SVPKSIGNLQQLLTLVISNNNLSGE----IPQLWSNISSLYILDMSNNTLSG------EIPDSIGCLL 445 (698)
Q Consensus 377 ~L~L~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~------~~~~~~~~~~ 445 (698)
.|++..+.+.+ .....+..+..|+.+.+++|.+... ++..+...+.+++++++++.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46677777763 3344556678899999999987532 34456677889999999987762 2234566688
Q ss_pred CCcEEEccCCeeeeeCCCCCCCC---CCCCEEEcCCCcCcccCc----hhhhhcC-CCCcEEEccCCccccc----CChh
Q 047203 446 SVRFLILCNNHISGEVPPSLKNC---SMMDSLDLGDNQLSGNIP----AWIGESM-PSLSILRLRSNYFNGT----IPPE 513 (698)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~L~~n~~~~~~~----~~~~~~l-~~L~~L~l~~~~~~~~----~~~~ 513 (698)
+|++|++++|.+....+..+..+ ++|++|++++|.+.+... ..+. .+ ++|+.|++++|.+++. +...
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 99999999998864444444333 459999999998874222 2222 35 8999999999998732 3446
Q ss_pred hccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCcc----
Q 047203 514 LCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGE---- 589 (698)
Q Consensus 514 l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~---- 589 (698)
+..++.|++|++++|.+.+.....+. ..+...+.|+.|++++|.+++.
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~----------------------------~~l~~~~~L~~L~L~~n~i~~~~~~~ 212 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALA----------------------------EGLKANCNLEVLDLNNNGLTDEGASA 212 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHH----------------------------HHHHhCCCCCEEeccCCccChHHHHH
Confidence 77788999999999988743111110 0112235669999999998754
Q ss_pred CChhhhccCCCCEEeCCCCcccccCCcccc-----CCCCCCeEeccCCcccc----cCCcCccCCCCCCeEecccceeee
Q 047203 590 MPVELTRLIHLGTLNLSQNHLVGKIPTQIG-----KLEWLESLDLSKNKLSG----SIPPSMVSLTFMNHLNLSYNNLSG 660 (698)
Q Consensus 590 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~sL~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~~~~ 660 (698)
+...+..+++|++|++++|.+++.....+. ..+.|++|++++|.+.. .+++.+..+++|+.+++++|++.+
T Consensus 213 l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 213 LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 334567789999999999998863333222 24899999999999862 344566677999999999999996
Q ss_pred c
Q 047203 661 E 661 (698)
Q Consensus 661 ~ 661 (698)
.
T Consensus 293 ~ 293 (319)
T cd00116 293 E 293 (319)
T ss_pred H
Confidence 4
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=6.3e-18 Score=140.82 Aligned_cols=177 Identities=28% Similarity=0.446 Sum_probs=124.4
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCc
Q 047203 12 NCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGG 91 (698)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 91 (698)
+.+++...+...+.++.+++.|.|++|.++. .|..+..+.+|+.|++.+|++. .+|..++.+++|++|+++-|++ .
T Consensus 17 DrgiSsf~~~~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl--~ 92 (264)
T KOG0617|consen 17 DRGISSFEELPGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRL--N 92 (264)
T ss_pred ccccccHhhcccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhh--h
Confidence 3445444444455677889999999999985 5666999999999999999988 6888899999999999998885 5
Q ss_pred ccchhccCCCCCCEEeCcCccCCC-ccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeec
Q 047203 92 RLSRNLGKLCNLRTLKLSRNSISG-EVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGS 170 (698)
Q Consensus 92 ~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (698)
.+|..|+.++-|++||++.|++.. ..++.|..+. .|+.|++++|.++ .+|..++++++|+.|.+..|.+. .
T Consensus 93 ~lprgfgs~p~levldltynnl~e~~lpgnff~m~------tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~ 164 (264)
T KOG0617|consen 93 ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMT------TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-S 164 (264)
T ss_pred cCccccCCCchhhhhhccccccccccCCcchhHHH------HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-h
Confidence 789999999999999999887763 2233333333 4555566666555 55555666666666666665554 4
Q ss_pred CCCCCcCcccCCeeeccCcccCccccccCC
Q 047203 171 IPPSIGNLTFLKELYLSSNQMNGFPESFGQ 200 (698)
Q Consensus 171 ~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~ 200 (698)
+|..++.+..|++|.+.+|.++.+|..+++
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 555566666666666666666665554443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.5e-16 Score=132.72 Aligned_cols=178 Identities=28% Similarity=0.508 Sum_probs=106.6
Q ss_pred ccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCE
Q 047203 443 CLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHI 522 (698)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 522 (698)
.+...+.|.++.|.++ ..|..+..+.+|+.|++++|++. .+|..+.. +++|+.|++.-|++. ..|.+|+.+|.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~iss-l~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISS-LPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhh-chhhhheecchhhhh-cCccccCCCchhhh
Confidence 3455666777777776 55666667777777777777776 66666554 667777777666665 66667777777777
Q ss_pred EECCCCcCccC-CCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCC
Q 047203 523 LDLSHNNLSGF-IPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLG 601 (698)
Q Consensus 523 L~l~~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~ 601 (698)
|++..|.+... +|.-|-. +..|+-|++++|.+. .+|...+.+++||
T Consensus 107 ldltynnl~e~~lpgnff~--------------------------------m~tlralyl~dndfe-~lp~dvg~lt~lq 153 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFY--------------------------------MTTLRALYLGDNDFE-ILPPDVGKLTNLQ 153 (264)
T ss_pred hhccccccccccCCcchhH--------------------------------HHHHHHHHhcCCCcc-cCChhhhhhccee
Confidence 77766655432 2222221 222344566666665 5666666666666
Q ss_pred EEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCC---CCCCeEecccceee
Q 047203 602 TLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSL---TFMNHLNLSYNNLS 659 (698)
Q Consensus 602 ~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~n~~~ 659 (698)
.|.+..|.+. ++|..++.++.|++|+|.+|++. .+|..++++ .+-+...+.+||+.
T Consensus 154 il~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 154 ILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred EEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 6666666665 55666666666666666666666 344444443 23333445555554
No 23
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.9e-12 Score=124.75 Aligned_cols=211 Identities=23% Similarity=0.203 Sum_probs=147.9
Q ss_pred CCCcceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCC--CCccccCCCCCCEEEcccCcccccCCc-cccCCCC
Q 047203 1 MLRSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSK--IPHWLFNITRLSSLDLNTNDLQGDIPD-GFSSLNS 77 (698)
Q Consensus 1 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~ 77 (698)
+++.||.+.|.++.....+...-...|++++.|||+.|-++.. +......+++|+.|+++.|++...... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3567888889888887777655566789999999999977643 334456899999999999887522111 1236779
Q ss_pred CcEEECCCCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCccccc-CCccccCCCC
Q 047203 78 LQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGD-LPNSLGYLKN 156 (698)
Q Consensus 78 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~ 156 (698)
|+.|.++.|.+.-.........+|+|+.|++..|..-........-+ ..|+.|++++|.+.+. .....+.++.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~------~~L~~LdLs~N~li~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL------QTLQELDLSNNNLIDFDQGYKVGTLPG 272 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh------hHHhhccccCCcccccccccccccccc
Confidence 99999999986433344445678999999999885222222222222 2799999999876633 2345678889
Q ss_pred CcEEEccCceeeecC-CCC-----CcCcccCCeeeccCcccCccc--cccCCCCCCcEEEccCCeeeee
Q 047203 157 LRYLELWDNSFVGSI-PPS-----IGNLTFLKELYLSSNQMNGFP--ESFGQLSAIEVLDLDENQWEGI 217 (698)
Q Consensus 157 L~~L~l~~~~~~~~~-~~~-----l~~l~~L~~L~l~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~~~ 217 (698)
|+.|+++.|++...- |+. ...+++|+.|++..|++.+++ ..+..+++|+.|.+..+.+...
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 999999998887542 222 245788999999999887754 4566778888888888776543
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=1.9e-12 Score=121.33 Aligned_cols=245 Identities=20% Similarity=0.267 Sum_probs=171.0
Q ss_pred CCCCCCCcEEECCCCCCCCC----CCccccCCCCCCEEEcccC---cccccCC-------ccccCCCCCcEEECCCCCCC
Q 047203 24 SLNFTSLQVLDLSNNGFNSK----IPHWLFNITRLSSLDLNTN---DLQGDIP-------DGFSSLNSLQQLDLTGNSFL 89 (698)
Q Consensus 24 ~~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~---~~~~~~~-------~~~~~l~~L~~L~l~~~~~~ 89 (698)
+..+..++.++|++|.+... +...+.+.++|+..+++.- +..+.+| +++.++++|++|+||.|-+-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 34568899999999999754 4556678899999998853 2222333 44668889999999999853
Q ss_pred Ccc---cchhccCCCCCCEEeCcCccCCCccchhhcc-------ccccccCCCCcEEEccCCccccc----CCccccCCC
Q 047203 90 GGR---LSRNLGKLCNLRTLKLSRNSISGEVSDFING-------LSECTNSSLLEKLELGFNQLTGD----LPNSLGYLK 155 (698)
Q Consensus 90 ~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-------l~~~~~~~~L~~L~l~~~~i~~~----~~~~~~~l~ 155 (698)
... +...++.+.+|++|.|.+|.+.......++. .......+.|+++..+.|++.+. ....|+..+
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~ 185 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP 185 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence 322 2344678999999999999988655444322 22234556899999999988754 345678889
Q ss_pred CCcEEEccCceeeec----CCCCCcCcccCCeeeccCcccCc-----cccccCCCCCCcEEEccCCeeeeecCchhhcCC
Q 047203 156 NLRYLELWDNSFVGS----IPPSIGNLTFLKELYLSSNQMNG-----FPESFGQLSAIEVLDLDENQWEGIITETHFRNL 226 (698)
Q Consensus 156 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 226 (698)
.|+.+.+.+|.|... ....+..+++|++|++.+|.++. +...+..+++|+++++++|.+...-..+.+.-+
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 999999999987522 23446789999999999998876 456678889999999999987643222111000
Q ss_pred CCccEEecccccccceeeeecCCCccCCcceeEEEeccccCCc----cCCccccCCCCccEEEccCCcCc
Q 047203 227 SNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGP----KFPTWLRNQTELTTLVLNNARIS 292 (698)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~ 292 (698)
....+.|+.+.+.+|.++. .+...+...+.|+.|++++|++.
T Consensus 266 ------------------------~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 266 ------------------------KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ------------------------hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 0012345555555666553 23334556889999999999884
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.06 E-value=1.2e-11 Score=116.09 Aligned_cols=249 Identities=21% Similarity=0.225 Sum_probs=130.7
Q ss_pred CCCCCCEEEccCCcCCC----CCCccccCccCCcEEEeeCCccc---cCcCc-------cCCCCCCccEEEcccCccccc
Q 047203 371 KIPFLTDLDISFNSLNG----SVPKSIGNLQQLLTLVISNNNLS---GEIPQ-------LWSNISSLYILDMSNNTLSGE 436 (698)
Q Consensus 371 ~~~~L~~L~L~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~---~~~~~-------~~~~l~~L~~L~L~~n~~~~~ 436 (698)
.+..++++++++|.+.. .+...+.+.+.|+..++++-... ..+|. .+..+++|++++||.|-+...
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 46778888888888764 23344555667777777664321 11221 233445666666666655433
Q ss_pred cCcc----ccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCccccc---
Q 047203 437 IPDS----IGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT--- 509 (698)
Q Consensus 437 ~~~~----~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--- 509 (698)
.+.. +..+.+|++|.+.+|.+.......+.. .|..|. ........+.|+++....|.+...
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~----------~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA----------VNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH----------HHhccCCCcceEEEEeeccccccccHH
Confidence 2222 233455555555555543111000000 000000 000011234555555555544321
Q ss_pred -CChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCc
Q 047203 510 -IPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSG 588 (698)
Q Consensus 510 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 588 (698)
+...|...+.|+.+.+.+|.+....-.. -...+..+++|+.|||.+|-++.
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~a----------------------------l~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTA----------------------------LAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHH----------------------------HHHHHHhCCcceeeecccchhhh
Confidence 2234445555555555555443211000 01112334444556666665543
Q ss_pred c----CChhhhccCCCCEEeCCCCcccccCCccc-----cCCCCCCeEeccCCccccc----CCcCccCCCCCCeEeccc
Q 047203 589 E----MPVELTRLIHLGTLNLSQNHLVGKIPTQI-----GKLEWLESLDLSKNKLSGS----IPPSMVSLTFMNHLNLSY 655 (698)
Q Consensus 589 ~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-----~~l~sL~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~ 655 (698)
. +...+..+++|++|++++|.+.+.+..++ ...|+|+.|++.+|.|.+. +....+..+.|+.|+|++
T Consensus 228 egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 228 EGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNG 307 (382)
T ss_pred HHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCc
Confidence 2 34556777888888888888876655333 3368899999999988743 344455678899999999
Q ss_pred ceee
Q 047203 656 NNLS 659 (698)
Q Consensus 656 n~~~ 659 (698)
|++.
T Consensus 308 N~l~ 311 (382)
T KOG1909|consen 308 NRLG 311 (382)
T ss_pred cccc
Confidence 9883
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=4.2e-11 Score=109.72 Aligned_cols=202 Identities=24% Similarity=0.222 Sum_probs=105.7
Q ss_pred ccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCC---eeeeeCCCCCCC
Q 047203 391 KSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNN---HISGEVPPSLKN 467 (698)
Q Consensus 391 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~l~~ 467 (698)
..+..+.+|+++.++.|.-..+ .+.-..-|.|.++......+... ..+-....+. +..+. ..++.....+.-
T Consensus 208 f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~~--~~l~pe~~~~--D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 208 FNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQDV--PSLLPETILA--DPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cchHHhhhhheeeeeccchhhe-eceeecCchhheeeeeccccccc--ccccchhhhc--CccCCCCCccCCceEEecch
Confidence 3344466777777777654422 12222235666666665544321 0011001111 11111 011111122333
Q ss_pred CCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcC
Q 047203 468 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIE 547 (698)
Q Consensus 468 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~ 547 (698)
++.|+++++++|.|+ .+.+.+-- .|.++.|+++.|.+... ..++.+++|++|++++|.++.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL-~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~--------------- 343 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKL-APKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE--------------- 343 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhh-ccceeEEeccccceeee--hhhhhcccceEeecccchhHh---------------
Confidence 456677777777766 56555443 66777777777766532 236666666666666665442
Q ss_pred CCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeE
Q 047203 548 PPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESL 627 (698)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L 627 (698)
...+=..+-+.+.|.++.|.+.+. .++.++-+|..|
T Consensus 344 ------------------------------------------~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnL 379 (490)
T KOG1259|consen 344 ------------------------------------------CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNL 379 (490)
T ss_pred ------------------------------------------hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheec
Confidence 112223345566666666666422 455666677777
Q ss_pred eccCCccccc-CCcCccCCCCCCeEecccceeee
Q 047203 628 DLSKNKLSGS-IPPSMVSLTFMNHLNLSYNNLSG 660 (698)
Q Consensus 628 ~l~~~~~~~~-~~~~l~~l~~L~~L~l~~n~~~~ 660 (698)
|+++|+|.+. -.+.+.++|.|+++.+.+||+..
T Consensus 380 Dl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 380 DLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred cccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7777766533 22456677777777777777664
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=5e-11 Score=115.17 Aligned_cols=117 Identities=28% Similarity=0.251 Sum_probs=54.9
Q ss_pred CCCCCCccEEEcccCccccc--cCccccccCCCcEEEccCCeeeeeCCC-CCCCCCCCCEEEcCCCcCcccCchhhhhcC
Q 047203 417 WSNISSLYILDMSNNTLSGE--IPDSIGCLLSVRFLILCNNHISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESM 493 (698)
Q Consensus 417 ~~~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l 493 (698)
...++.++.|++++|-+... .......+|+|+.|+++.|.+...... .-..++.|+.|.++.|.++..-...+...+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 34455555555555544321 112223455555555555554311111 112345566666666666532222333346
Q ss_pred CCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccC
Q 047203 494 PSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGF 533 (698)
Q Consensus 494 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 533 (698)
|+|+.|++.+|.....-......+..|++|+|++|++.++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc
Confidence 6666666666632212222334445566666666665543
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.03 E-value=1.1e-10 Score=103.25 Aligned_cols=130 Identities=29% Similarity=0.302 Sum_probs=48.5
Q ss_pred CCCCCCCcEEECCCCCCCCCCCcccc-CCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhc-cCCC
Q 047203 24 SLNFTSLQVLDLSNNGFNSKIPHWLF-NITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNL-GKLC 101 (698)
Q Consensus 24 ~~~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~ 101 (698)
..+...++.|+|++|.|+.+ +.+. .+.+|+.|++++|.+... +.+..+++|++|++++|.+. .....+ ..++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~--~i~~~l~~~lp 88 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS--SISEGLDKNLP 88 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS-----S-CHHHHHH-T
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC--ccccchHHhCC
Confidence 34556688888888888754 3454 578888888888888754 34778888888888888853 233333 4688
Q ss_pred CCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCccccc---CCccccCCCCCcEEEccC
Q 047203 102 NLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGD---LPNSLGYLKNLRYLELWD 164 (698)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~---~~~~~~~l~~L~~L~l~~ 164 (698)
+|++|++++|++.+.. .+..+..+++|++|++.+|.+... ....+..+|+|+.||-..
T Consensus 89 ~L~~L~L~~N~I~~l~-----~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 89 NLQELYLSNNKISDLN-----ELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp T--EEE-TTS---SCC-----CCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cCCEEECcCCcCCChH-----HhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 8888888888887532 344445566888888888887643 122466778888887553
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.01 E-value=7.3e-10 Score=120.75 Aligned_cols=119 Identities=36% Similarity=0.602 Sum_probs=105.4
Q ss_pred ccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecc
Q 047203 575 LVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLS 654 (698)
Q Consensus 575 ~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 654 (698)
.++.|++++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|+.+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCCCCC--ccccCCCCccccCCCCCcCCCCCCCCcc
Q 047203 655 YNNLSGEIPKVN--QFQSLKDPSIYEGNLALCGDPLPERCSE 694 (698)
Q Consensus 655 ~n~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (698)
+|++.+.+|..- .+.++..+. +.++..+|+.|-...|..
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~-~~~N~~lc~~p~l~~C~~ 539 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFN-FTDNAGLCGIPGLRACGP 539 (623)
T ss_pred CCcccccCChHHhhccccCceEE-ecCCccccCCCCCCCCcc
Confidence 999999999752 233444445 889999999876667753
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=7.3e-10 Score=115.64 Aligned_cols=105 Identities=37% Similarity=0.587 Sum_probs=59.6
Q ss_pred CCCccEEEcccCccccccCccccccC-CCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcE
Q 047203 420 ISSLYILDMSNNTLSGEIPDSIGCLL-SVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSI 498 (698)
Q Consensus 420 l~~L~~L~L~~n~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 498 (698)
++.++.+++.+|.+..+ +....... +|+.|++++|.+. ..+..+..+++|+.|++++|++. .++..... .+.|+.
T Consensus 115 ~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~-~~~L~~ 190 (394)
T COG4886 115 LTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSN-LSNLNN 190 (394)
T ss_pred ccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhh-hhhhhh
Confidence 35566666666666533 22233332 6666666666665 33345566666777777777666 45443322 666666
Q ss_pred EEccCCcccccCChhhccCCCCCEEECCCCc
Q 047203 499 LRLRSNYFNGTIPPELCKLSALHILDLSHNN 529 (698)
Q Consensus 499 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 529 (698)
|++++|.+. .+|...+....|+++.+++|+
T Consensus 191 L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred eeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence 777776666 444444445556666666664
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=4.6e-10 Score=99.25 Aligned_cols=66 Identities=27% Similarity=0.414 Sum_probs=15.7
Q ss_pred CCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCccccc-CChhhccCCCCCEEECCCCcCc
Q 047203 465 LKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT-IPPELCKLSALHILDLSHNNLS 531 (698)
Q Consensus 465 l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 531 (698)
+..++.|++|++++|.++ .+...+...+|+|+.|++++|++.+. ....+..+++|++|++.+||+.
T Consensus 60 l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp ----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 333444444444444443 23222222244444444444444321 1123334444444444444443
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=2.5e-11 Score=120.94 Aligned_cols=192 Identities=29% Similarity=0.474 Sum_probs=123.2
Q ss_pred ccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEcc
Q 047203 423 LYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR 502 (698)
Q Consensus 423 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 502 (698)
-...+++.|++. ++|..+..+..|+.+.+..|.+. ..|..+.++..|..++++.|++. .+|..+.. --|+.|.++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~--lpLkvli~s 151 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCD--LPLKVLIVS 151 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhc--CcceeEEEe
Confidence 345677777776 45555666777777777777776 66777777888888888888877 66666542 357777777
Q ss_pred CCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcC
Q 047203 503 SNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLS 582 (698)
Q Consensus 503 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 582 (698)
+|+++ .+|+.++.++.|..|+.+.|.+. .+|..++.+.+| +.+.+.
T Consensus 152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl--------------------------------r~l~vr 197 (722)
T KOG0532|consen 152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL--------------------------------RDLNVR 197 (722)
T ss_pred cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH--------------------------------HHHHHh
Confidence 77777 66666777777777777777665 333344433333 455555
Q ss_pred CCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCcc---CCCCCCeEecccce
Q 047203 583 SNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMV---SLTFMNHLNLSYNN 657 (698)
Q Consensus 583 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~n~ 657 (698)
.|.+. .+|+.+. .-.|..||++.|+++ .+|-.|..+..|++|-|.+|.+. +.|+.+. ...-.+.|+++-|+
T Consensus 198 Rn~l~-~lp~El~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 198 RNHLE-DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhhh-hCCHHHh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 55555 4444555 344666666666666 56666666666666666666665 4454443 34555666666664
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.7e-09 Score=120.33 Aligned_cols=130 Identities=36% Similarity=0.444 Sum_probs=83.6
Q ss_pred CCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCc--ccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCC
Q 047203 26 NFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTND--LQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNL 103 (698)
Q Consensus 26 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 103 (698)
+....|.+.+.++.+.. .+... .+++|++|-+..|. +.....+.|..++.|++||+++|. ....+|..++++-+|
T Consensus 521 ~~~~~rr~s~~~~~~~~-~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEH-IAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-SLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchhh-ccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-ccCcCChHHhhhhhh
Confidence 34667888888887763 34433 44578888888875 454445557788888888888876 556788888888888
Q ss_pred CEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCe
Q 047203 104 RTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKE 183 (698)
Q Consensus 104 ~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 183 (698)
|+|+++++.+. .+|..+++++.|.+|++..+......|.....+++|++
T Consensus 598 ryL~L~~t~I~-------------------------------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 598 RYLDLSDTGIS-------------------------------HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRV 646 (889)
T ss_pred hcccccCCCcc-------------------------------ccchHHHHHHhhheeccccccccccccchhhhcccccE
Confidence 88888877665 34455555555555555554433333444444555555
Q ss_pred eeccCc
Q 047203 184 LYLSSN 189 (698)
Q Consensus 184 L~l~~~ 189 (698)
|.+...
T Consensus 647 L~l~~s 652 (889)
T KOG4658|consen 647 LRLPRS 652 (889)
T ss_pred EEeecc
Confidence 555443
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.89 E-value=2.5e-09 Score=111.66 Aligned_cols=181 Identities=38% Similarity=0.536 Sum_probs=121.2
Q ss_pred CCCCCCCcEEECCCCCCCCCCCccccCCC-CCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCC
Q 047203 24 SLNFTSLQVLDLSNNGFNSKIPHWLFNIT-RLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCN 102 (698)
Q Consensus 24 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 102 (698)
+..++.++.|++.++.++. ++....... +|+.|++++|.+. .+|..+..+++|+.|++++|.+ ...+...+..+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l--~~l~~~~~~~~~ 187 (394)
T COG4886 112 LLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDL--SDLPKLLSNLSN 187 (394)
T ss_pred hhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchh--hhhhhhhhhhhh
Confidence 3445677788888887773 455455664 7888888877777 3445677777888888887774 344444457777
Q ss_pred CCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCC
Q 047203 103 LRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLK 182 (698)
Q Consensus 103 L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 182 (698)
|+.|++++|++..+.... .. ...|+++.+++|.+. ..+..+..+.++..+.+.++++. ..+..++.++.++
T Consensus 188 L~~L~ls~N~i~~l~~~~-~~------~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~ 258 (394)
T COG4886 188 LNNLDLSGNKISDLPPEI-EL------LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE 258 (394)
T ss_pred hhheeccCCccccCchhh-hh------hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccc
Confidence 888888887777544321 11 114777777777533 34556667777777777777765 3355677777788
Q ss_pred eeeccCcccCccccccCCCCCCcEEEccCCeeeeec
Q 047203 183 ELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGII 218 (698)
Q Consensus 183 ~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 218 (698)
+|++++|.++.++. +..+.+++.++++++.+....
T Consensus 259 ~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 259 TLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred eecccccccccccc-ccccCccCEEeccCccccccc
Confidence 88888888777765 777778888888877765443
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=9.3e-11 Score=116.99 Aligned_cols=189 Identities=31% Similarity=0.449 Sum_probs=89.6
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCC
Q 047203 8 LHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNS 87 (698)
Q Consensus 8 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 87 (698)
|.|++.+++..|....--.+..-...|++.|++. .+|..+..+.-|+.+.+..|.+- ..|.++.++..|.+|+++.|.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence 3444455555444222123344445555555555 35555555555555555555554 445555555555555555555
Q ss_pred CCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCcee
Q 047203 88 FLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSF 167 (698)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~ 167 (698)
+ ..+|..++.++ |++|.+++|+++ .+|..++....|.+|+.+.|.+
T Consensus 133 l--S~lp~~lC~lp-------------------------------Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei 178 (722)
T KOG0532|consen 133 L--SHLPDGLCDLP-------------------------------LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEI 178 (722)
T ss_pred h--hcCChhhhcCc-------------------------------ceeEEEecCccc-cCCcccccchhHHHhhhhhhhh
Confidence 3 23333333332 444444444444 3344444444555555555544
Q ss_pred eecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEeccc
Q 047203 168 VGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYK 236 (698)
Q Consensus 168 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (698)
. .+|..++.+.+|+.|.+.+|.+..+|..+..+ .|..||++.|++.. ++. .|++++.|++|.+.+
T Consensus 179 ~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~-iPv-~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 179 Q-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISY-LPV-DFRKMRHLQVLQLEN 243 (722)
T ss_pred h-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceee-cch-hhhhhhhheeeeecc
Confidence 4 33444444555555555555555544444422 34445555554432 111 344555555555444
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=6.8e-10 Score=101.96 Aligned_cols=78 Identities=27% Similarity=0.303 Sum_probs=31.0
Q ss_pred CcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccCC
Q 047203 133 LEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDEN 212 (698)
Q Consensus 133 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~ 212 (698)
++.|+++.|.+... ..++.+++|++||+++|.+. ....|=.++-++++|.++.|.++.+ .++..+-+|..||+++|
T Consensus 309 ir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N 384 (490)
T KOG1259|consen 309 LRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSN 384 (490)
T ss_pred eeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheecccccc
Confidence 44444444444322 11344444444444444333 2222323333444444444444443 23333444444444444
Q ss_pred ee
Q 047203 213 QW 214 (698)
Q Consensus 213 ~~ 214 (698)
++
T Consensus 385 ~I 386 (490)
T KOG1259|consen 385 QI 386 (490)
T ss_pred ch
Confidence 43
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2.2e-09 Score=77.78 Aligned_cols=61 Identities=39% Similarity=0.515 Sum_probs=44.7
Q ss_pred CCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEeccccee
Q 047203 598 IHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 658 (698)
Q Consensus 598 ~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 658 (698)
++|++|++++|+++...++.|.++++|++|++++|.+....|+.|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777756556777777777777777777766677777777777777777764
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.82 E-value=9.5e-09 Score=112.11 Aligned_cols=87 Identities=32% Similarity=0.509 Sum_probs=50.8
Q ss_pred CeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCC-CCCCeEeccc
Q 047203 577 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSL-TFMNHLNLSY 655 (698)
Q Consensus 577 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~ 655 (698)
+.|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|+.+..+++|++|++++|.+.+.+|..+... .++..+++.+
T Consensus 445 ~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 445 QSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 455555555555555556666666666666666665666666666666666666666665666555442 3455666666
Q ss_pred ceeeecCC
Q 047203 656 NNLSGEIP 663 (698)
Q Consensus 656 n~~~~~~p 663 (698)
|+.....|
T Consensus 525 N~~lc~~p 532 (623)
T PLN03150 525 NAGLCGIP 532 (623)
T ss_pred CccccCCC
Confidence 65554433
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.79 E-value=6.5e-09 Score=115.71 Aligned_cols=271 Identities=22% Similarity=0.199 Sum_probs=164.7
Q ss_pred CCCCeEECCCCCCcCCC-CCcccCccEEEcccCcc-cccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEe
Q 047203 327 RFPGTVDLSSNSFEGPL-PLWSFNVTKLYLNNNSF-SGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVI 404 (698)
Q Consensus 327 ~~l~~l~l~~~~~~~~~-~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l 404 (698)
...+.+.+-++.+.... ...++.+++|-+..+.. ...++..|+..+|.|+.||+++|.-...+|..++.+-+|+.|++
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L 602 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL 602 (889)
T ss_pred hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence 34455555555554332 22344788888888762 33677777788999999999988777788888899999999999
Q ss_pred eCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeee--eeCCCCCCCCCCCCEEEcCCCcCc
Q 047203 405 SNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHIS--GEVPPSLKNCSMMDSLDLGDNQLS 482 (698)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~L~~n~~~ 482 (698)
+++.+. .+|..+.++.+|.+|++..+......+.....+++|++|.+...... ......+..+.+|+.+.......
T Consensus 603 ~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 603 SDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV- 680 (889)
T ss_pred cCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence 999888 78888999999999999988765555666666899999988765421 12223345566666666654432
Q ss_pred ccCchhhhhcCCCCc----EEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCC------CcCCCCCc
Q 047203 483 GNIPAWIGESMPSLS----ILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRM------KIEPPDSV 552 (698)
Q Consensus 483 ~~~~~~~~~~l~~L~----~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L------~~~~~~~~ 552 (698)
.+-..+. ..+.|. .+.+.++... ..+..+..+.+|+.|.+.+|.+.++..........+ .......+
T Consensus 681 -~~~e~l~-~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~ 757 (889)
T KOG4658|consen 681 -LLLEDLL-GMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNC 757 (889)
T ss_pred -HhHhhhh-hhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcc
Confidence 1111111 133333 3343333332 455677889999999999998875544332211111 11111111
Q ss_pred ccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCccc
Q 047203 553 EYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLV 611 (698)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 611 (698)
+. .....+....++|+.+++.+++...........+..++.+.+..+.+.
T Consensus 758 ~~---------~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 758 HM---------LRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLE 807 (889)
T ss_pred cc---------ccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccc
Confidence 10 111222234567777777777666555555555555555444444443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=5.6e-09 Score=75.64 Aligned_cols=60 Identities=42% Similarity=0.610 Sum_probs=45.6
Q ss_pred CCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCC
Q 047203 28 TSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNS 87 (698)
Q Consensus 28 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 87 (698)
++|++|++++|.++...+++|..+++|++|++++|.+....|++|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 467777787777776666777777888888888777777777777777778877777775
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.72 E-value=1.6e-09 Score=112.95 Aligned_cols=246 Identities=25% Similarity=0.275 Sum_probs=130.7
Q ss_pred CCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEE
Q 047203 372 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLI 451 (698)
Q Consensus 372 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 451 (698)
+..++.+.+..|.+.. ....+..+.+|+.|++.+|.+... ...+..+++|++|++++|.|..+ ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 4445555555555543 222345566666666666666522 22245566666666666666643 2345555566666
Q ss_pred ccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCc
Q 047203 452 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLS 531 (698)
Q Consensus 452 l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (698)
+.+|.+.. ...+..++.|+.+++++|++. .+.......+.+++.+++.+|.+... +.+..+..+..+++..|.+.
T Consensus 147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~-~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISD--ISGLESLKSLKLLDLSYNRIV-DIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchh--ccCCccchhhhcccCCcchhh-hhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccce
Confidence 66666642 234445666667777777665 33321023366666666666665422 22333333334455555444
Q ss_pred cCCCcccccccCCCcCCCCCcccccceEEeecccceeeecccc--ccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCc
Q 047203 532 GFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLY--LVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNH 609 (698)
Q Consensus 532 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 609 (698)
..-+. ..+. +|+++++++|++. ..+..+..+.++..|++.+|+
T Consensus 222 ~~~~l----------------------------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 222 KLEGL----------------------------------NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred eccCc----------------------------------ccchhHHHHHHhcccCccc-cccccccccccccccchhhcc
Confidence 22110 0011 2466666777665 222455566677777777777
Q ss_pred ccccCCccccCCCCCCeEeccCCccccc---CCcC-ccCCCCCCeEecccceeeecCC
Q 047203 610 LVGKIPTQIGKLEWLESLDLSKNKLSGS---IPPS-MVSLTFMNHLNLSYNNLSGEIP 663 (698)
Q Consensus 610 ~~~~~~~~l~~l~sL~~L~l~~~~~~~~---~~~~-l~~l~~L~~L~l~~n~~~~~~p 663 (698)
+... +.+...+.+..+....+.+... .... ....+.++.+.+..|+.....+
T Consensus 267 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 267 ISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 6533 3445556666666666655421 2222 4455677777777776666444
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=2.6e-10 Score=104.64 Aligned_cols=181 Identities=22% Similarity=0.156 Sum_probs=127.9
Q ss_pred CCCcEEECCCCCCCCC-CCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCc-ccchhccCCCCCCE
Q 047203 28 TSLQVLDLSNNGFNSK-IPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGG-RLSRNLGKLCNLRT 105 (698)
Q Consensus 28 ~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~ 105 (698)
..|++|||++..|+.. +...+..|.+|+.|.+.++++.+.+...+++-.+|+.|+++.|.-.+. ...-.+..++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4589999999988754 445567899999999999999888888889999999999998874333 33445778999999
Q ss_pred EeCcCccCCCccc-hhhccccccccCCCCcEEEccCCccc---ccCCccccCCCCCcEEEccCcee-eecCCCCCcCccc
Q 047203 106 LKLSRNSISGEVS-DFINGLSECTNSSLLEKLELGFNQLT---GDLPNSLGYLKNLRYLELWDNSF-VGSIPPSIGNLTF 180 (698)
Q Consensus 106 L~l~~~~~~~~~~-~~l~~l~~~~~~~~L~~L~l~~~~i~---~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~ 180 (698)
|++++|.+..... -.+..+. +.|..|+++++.-. ....--...+++|.+||+++|.. +......|.+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~his-----e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHIS-----ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred cCchHhhccchhhhHHHhhhc-----hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 9999998764322 1222222 26888888887421 11112235788999999998753 2223334677888
Q ss_pred CCeeeccCcccCc--cccccCCCCCCcEEEccCCe
Q 047203 181 LKELYLSSNQMNG--FPESFGQLSAIEVLDLDENQ 213 (698)
Q Consensus 181 L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~ 213 (698)
|++|.+++|..-. .--.+...|.|.+|++.++-
T Consensus 340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred heeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 9999998887432 22346677888888888764
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=4.5e-09 Score=109.64 Aligned_cols=195 Identities=32% Similarity=0.392 Sum_probs=122.8
Q ss_pred CcceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEE
Q 047203 3 RSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLD 82 (698)
Q Consensus 3 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 82 (698)
..++.+++..+.+.... -....+++++.|++.+|.|..+ ...+..+++|++|++++|.|.++-+ +..+..|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~~~--~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKIL--NHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhhhh--cccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccccc--hhhccchhhhe
Confidence 34455555555554411 1244567788888888877643 2226677888888888887775533 56666788888
Q ss_pred CCCCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEc
Q 047203 83 LTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLEL 162 (698)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l 162 (698)
+.+|.+ .....+..++.|+.+++++|++..+...... .+..++.+++.+|.+... ..+..+..+..+++
T Consensus 147 l~~N~i---~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~------~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l 215 (414)
T KOG0531|consen 147 LSGNLI---SDISGLESLKSLKLLDLSYNRIVDIENDELS------ELISLEELDLGGNSIREI--EGLDLLKKLVLLSL 215 (414)
T ss_pred eccCcc---hhccCCccchhhhcccCCcchhhhhhhhhhh------hccchHHHhccCCchhcc--cchHHHHHHHHhhc
Confidence 888874 3334455577788888888777755441012 222577777777776533 33444455555567
Q ss_pred cCceeeecCCCCCcCccc--CCeeeccCcccCccccccCCCCCCcEEEccCCeee
Q 047203 163 WDNSFVGSIPPSIGNLTF--LKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWE 215 (698)
Q Consensus 163 ~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 215 (698)
..+.+.... .+..+.. |+.++++++.+...+..+..++.+..+++..+.+.
T Consensus 216 ~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 216 LDNKISKLE--GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ccccceecc--CcccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 777666332 2333333 78888888888877667777788888888877654
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.5e-08 Score=93.35 Aligned_cols=179 Identities=22% Similarity=0.133 Sum_probs=120.9
Q ss_pred CCCcEEEccCCeeeeeC-CCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccC--ChhhccCCCCC
Q 047203 445 LSVRFLILCNNHISGEV-PPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI--PPELCKLSALH 521 (698)
Q Consensus 445 ~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~ 521 (698)
..|+.++++...++... ...+..|..|+.|.+.++++.|.+...+.+ -..|+.|+|++|.-.... .-.+..|+.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHh
Confidence 35777788777765322 223466777888888888777777666665 567778888777532221 12456777777
Q ss_pred EEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCC--c-cCChhhhccC
Q 047203 522 ILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLS--G-EMPVELTRLI 598 (698)
Q Consensus 522 ~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~--~-~~~~~l~~l~ 598 (698)
+|+++-|.+....- +-..-+-.+.|+.|+++++.-. . .+..-...|+
T Consensus 264 ~LNlsWc~l~~~~V------------------------------tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKV------------------------------TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred hcCchHhhccchhh------------------------------hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 77777776543210 1111233567788999887431 1 2233357789
Q ss_pred CCCEEeCCCCc-ccccCCccccCCCCCCeEeccCCcccccCCcCc---cCCCCCCeEecccc
Q 047203 599 HLGTLNLSQNH-LVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSM---VSLTFMNHLNLSYN 656 (698)
Q Consensus 599 ~L~~L~l~~n~-~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~n 656 (698)
+|.+|||++|- ++......|.+++-|++|.++.|... +|+.+ .+.|+|.+|++.+|
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence 99999999996 44444577788999999999999877 56554 57899999999987
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.33 E-value=7.1e-08 Score=87.74 Aligned_cols=199 Identities=18% Similarity=0.187 Sum_probs=140.2
Q ss_pred CCCCcEEECCCCCCCCC----CCccccCCCCCCEEEcccCc---cccc-------CCccccCCCCCcEEECCCCCCCCcc
Q 047203 27 FTSLQVLDLSNNGFNSK----IPHWLFNITRLSSLDLNTND---LQGD-------IPDGFSSLNSLQQLDLTGNSFLGGR 92 (698)
Q Consensus 27 ~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~---~~~~-------~~~~~~~l~~L~~L~l~~~~~~~~~ 92 (698)
+..+..++||+|.|... +...+.+-++|+..+++.-. ..+. +..++.+|++|+.++++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 57789999999999754 44455667888888887532 1222 3355789999999999999863322
Q ss_pred ---cchhccCCCCCCEEeCcCccCCCccchhhc-------cccccccCCCCcEEEccCCcccccCC----ccccCCCCCc
Q 047203 93 ---LSRNLGKLCNLRTLKLSRNSISGEVSDFIN-------GLSECTNSSLLEKLELGFNQLTGDLP----NSLGYLKNLR 158 (698)
Q Consensus 93 ---~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-------~l~~~~~~~~L~~L~l~~~~i~~~~~----~~~~~l~~L~ 158 (698)
+...++.-+.|.+|.+++|.+..+....++ ........|.|++..++.|++..... ..+....+|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 335577888999999999998865544332 33444567899999999998874322 2344557899
Q ss_pred EEEccCceeeecC-----CCCCcCcccCCeeeccCcccCc-----cccccCCCCCCcEEEccCCeeeeecCchhhcC
Q 047203 159 YLELWDNSFVGSI-----PPSIGNLTFLKELYLSSNQMNG-----FPESFGQLSAIEVLDLDENQWEGIITETHFRN 225 (698)
Q Consensus 159 ~L~l~~~~~~~~~-----~~~l~~l~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 225 (698)
.+.+.+|.|.-.- -..+..+++|+.|++.+|.++. +...+..++.|++|.+.+|-++..-....++.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~ 265 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR 265 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence 9999998764210 1123467899999999999876 34556777889999999998765444434433
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=1.8e-08 Score=103.78 Aligned_cols=158 Identities=27% Similarity=0.287 Sum_probs=86.5
Q ss_pred CCCCCCCCCCcEEECCCCCCCCCCCccccCC-CCCCEEEc--------------------------------ccCccccc
Q 047203 21 HFPSLNFTSLQVLDLSNNGFNSKIPHWLFNI-TRLSSLDL--------------------------------NTNDLQGD 67 (698)
Q Consensus 21 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~l--------------------------------~~~~~~~~ 67 (698)
...+..|..||+|.+.+|.++. ...+..+ .+|+.|-- ++|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 4677889999999999999864 1222221 23333332 222222 1
Q ss_pred CCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccC
Q 047203 68 IPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDL 147 (698)
Q Consensus 68 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~ 147 (698)
+-.++.-++.|+.|++++|++ .....+..+++|++|||+.|.++.+..-...+. +|+.|++++|.++..
T Consensus 179 mD~SLqll~ale~LnLshNk~---~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-------~L~~L~lrnN~l~tL- 247 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKF---TKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-------KLQLLNLRNNALTTL- 247 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhh---hhhHHHHhcccccccccccchhccccccchhhh-------hheeeeecccHHHhh-
Confidence 223334456667777777764 222356667777777777766653322111111 366677777665533
Q ss_pred CccccCCCCCcEEEccCceeeec-CCCCCcCcccCCeeeccCcccCc
Q 047203 148 PNSLGYLKNLRYLELWDNSFVGS-IPPSIGNLTFLKELYLSSNQMNG 193 (698)
Q Consensus 148 ~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~ 193 (698)
..+.++++|+.||+++|-+.+. .-..+..+..|++|.+.+|.+.-
T Consensus 248 -~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 248 -RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred -hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 3455666677777776655421 11223445566666777666543
No 47
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.28 E-value=2.7e-06 Score=84.95 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=30.4
Q ss_pred ccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCC
Q 047203 443 CLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 504 (698)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 504 (698)
.+..++.|++++|.++ .+| .-..+|++|.+++|.....+|..+ +++|+.|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 3466667777766554 333 112346666666654433455433 346666666666
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.28 E-value=2e-08 Score=103.50 Aligned_cols=109 Identities=31% Similarity=0.376 Sum_probs=84.6
Q ss_pred ccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCC-ccccCCCCCCeEeccCCcccccCCcCccCCCCCC
Q 047203 571 STLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIP-TQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMN 649 (698)
Q Consensus 571 ~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~ 649 (698)
.-++.++.|++++|+++..- .+..|+.|+.|||++|.++ .+| -...++. |+.|+|+||.+. . ...+.++.+|+
T Consensus 184 qll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-t-L~gie~LksL~ 257 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-T-LRGIENLKSLY 257 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-h-hhhHHhhhhhh
Confidence 44677799999999997443 7899999999999999988 444 3334445 999999999988 2 35678999999
Q ss_pred eEecccceeee--cCCCCCccccCCCCccccCCCCCcCC
Q 047203 650 HLNLSYNNLSG--EIPKVNQFQSLKDPSIYEGNLALCGD 686 (698)
Q Consensus 650 ~L~l~~n~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~ 686 (698)
.||+++|=+++ ++-..+.+.+|..|+ -+|||.-|.+
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~-LeGNPl~c~p 295 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLW-LEGNPLCCAP 295 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHh-hcCCccccCH
Confidence 99999998887 345557777777777 7787766655
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=2e-07 Score=86.11 Aligned_cols=106 Identities=24% Similarity=0.206 Sum_probs=53.1
Q ss_pred CCcEEEeeCCccccCcC-cc-CCCCCCccEEEcccCccccc--cCccccccCCCcEEEccCCeeeeeCCCCC-CCCCCCC
Q 047203 398 QLLTLVISNNNLSGEIP-QL-WSNISSLYILDMSNNTLSGE--IPDSIGCLLSVRFLILCNNHISGEVPPSL-KNCSMMD 472 (698)
Q Consensus 398 ~L~~L~l~~~~~~~~~~-~~-~~~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~ 472 (698)
.++-+.+.++.+.+... .. -..++.++++|+.+|.+++. +...+..+|.|++|+++.|.+. .....+ ....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccceE
Confidence 44455555655542211 11 12346667777777776642 2223445666777777666654 211222 2344566
Q ss_pred EEEcCCCcCcccCchhhhhcCCCCcEEEccCC
Q 047203 473 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSN 504 (698)
Q Consensus 473 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~ 504 (698)
+|.+.+..+...-.......+|.++.|.++.|
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 66666655442222333334555555555555
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=2.5e-07 Score=85.46 Aligned_cols=58 Identities=7% Similarity=0.221 Sum_probs=30.8
Q ss_pred ccCCeeeccCcccCcc--ccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEeccc
Q 047203 179 TFLKELYLSSNQMNGF--PESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYK 236 (698)
Q Consensus 179 ~~L~~L~l~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (698)
+++..+-+..|.+.+. -......+.+-.|+++.+++......+++.++++|.-+++.+
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~ 258 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSE 258 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccC
Confidence 4555555555555442 233444455555666666655555555555666665555554
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.12 E-value=5e-08 Score=94.35 Aligned_cols=280 Identities=17% Similarity=0.048 Sum_probs=130.9
Q ss_pred CCcEEECCCCCCCC--CCCccccCCCCCCEEEcccCcc-cccCC-ccccCCCCCcEEECCCCCCCCcccch-hccCCCCC
Q 047203 29 SLQVLDLSNNGFNS--KIPHWLFNITRLSSLDLNTNDL-QGDIP-DGFSSLNSLQQLDLTGNSFLGGRLSR-NLGKLCNL 103 (698)
Q Consensus 29 ~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L 103 (698)
.|+.|.++++.-.+ .+...-.+++++++|++.++.. ++..- ..-.+|.+|++|++..|...+..... ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46666666664321 1223334667777777666642 22111 11245667777777666533333333 23456777
Q ss_pred CEEeCcCcc-CCCccchhhccccccccCCCCcEEEccCCccccc--CCccccCCCCCcEEEccCceeeecCC--CCCcCc
Q 047203 104 RTLKLSRNS-ISGEVSDFINGLSECTNSSLLEKLELGFNQLTGD--LPNSLGYLKNLRYLELWDNSFVGSIP--PSIGNL 178 (698)
Q Consensus 104 ~~L~l~~~~-~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~--~~l~~l 178 (698)
++|+++++. +++.....+ . +.++.++.+...+|.-... +...=+.+..+..+++..|....... ..-..+
T Consensus 219 ~~lNlSwc~qi~~~gv~~~--~---rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQAL--Q---RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred HHhhhccCchhhcCcchHH--h---ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 777777664 222111111 0 1112344444444421100 11112234455666665664321111 011245
Q ss_pred ccCCeeeccCcccC-c--cccccCCCCCCcEEEccCCeeeeecCch-hhcCCCCccEEecccccccceeeeecCCCccCC
Q 047203 179 TFLKELYLSSNQMN-G--FPESFGQLSAIEVLDLDENQWEGIITET-HFRNLSNLKEISLYKLSENISLIFNISSHWIPP 254 (698)
Q Consensus 179 ~~L~~L~l~~~~~~-~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 254 (698)
..||.|+.+++.-. . +-.-..+..+|+.+.+++|+--...... .-++.+.|+.+++..+....+ .........+
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d--~tL~sls~~C 371 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITD--GTLASLSRNC 371 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehh--hhHhhhccCC
Confidence 56777777666532 2 1122345667777777776532111111 124556666666655333211 1233334456
Q ss_pred cceeEEEeccccCCccC-----CccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEecccc
Q 047203 255 FKLTFIKIRSCQLGPKF-----PTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNE 315 (698)
Q Consensus 255 ~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 315 (698)
+.++.+.++.|...... ...-..+..+..+++++++......-.+...+++|+.+++.+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 66677766666532211 12223455677777777765433332333334566666665554
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.98 E-value=1.4e-07 Score=91.32 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=21.1
Q ss_pred ccCCCCEEeCCCCccc-ccCCccccCCCCCCeEeccCCcc
Q 047203 596 RLIHLGTLNLSQNHLV-GKIPTQIGKLEWLESLDLSKNKL 634 (698)
Q Consensus 596 ~l~~L~~L~l~~n~~~-~~~~~~l~~l~sL~~L~l~~~~~ 634 (698)
++..|+.+.+++++.+ +...+.+..+++|+.+++.+|..
T Consensus 399 ~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 399 SLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 3455666666666533 23334455556666666666643
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=1.8e-05 Score=69.36 Aligned_cols=105 Identities=27% Similarity=0.260 Sum_probs=58.3
Q ss_pred eEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCC
Q 047203 6 VELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG 85 (698)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 85 (698)
+++++.+.++..... .-.-......+||++|.+-. -+.|..++.|.+|.+++|+|..+.|.--.-+++|+.|.+++
T Consensus 22 ~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchhh--ccccccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 345555555433322 00112456667777777642 23466777777777777777766665545556677777766
Q ss_pred CCCCCcccchhccCCCCCCEEeCcCccCC
Q 047203 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSIS 114 (698)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 114 (698)
|.+..-....-+..+|+|++|.+-+|.++
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchh
Confidence 66432233333445555555555555444
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=4.4e-07 Score=73.85 Aligned_cols=88 Identities=27% Similarity=0.300 Sum_probs=58.2
Q ss_pred CeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccc
Q 047203 577 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 656 (698)
Q Consensus 577 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 656 (698)
+.+++++|.|+ .+|+.+..+++|+.|+++.|++. ..|+-+..+.++-+|+..+|.+....-+ +.--+..-...+.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d-l~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD-LFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH-HhccccHHHHHhcCC
Confidence 66777777776 66666888888888888888877 4566666677777787777776633323 322233334455777
Q ss_pred eeeecCCCCCc
Q 047203 657 NLSGEIPKVNQ 667 (698)
Q Consensus 657 ~~~~~~p~~~~ 667 (698)
|+.+.-|+.++
T Consensus 157 pl~~~~~~klq 167 (177)
T KOG4579|consen 157 PLGDETKKKLQ 167 (177)
T ss_pred cccccCccccc
Confidence 77777776665
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.91 E-value=3.8e-06 Score=91.49 Aligned_cols=107 Identities=24% Similarity=0.304 Sum_probs=52.7
Q ss_pred cceEEeCCCCCCCCCCC-CCCCCCCCCCcEEECCCCCCCCC-CCccccCCCCCCEEEcccCcccccCCccccCCCCCcEE
Q 047203 4 SLVELHLPNCNLPIPPF-HFPSLNFTSLQVLDLSNNGFNSK-IPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQL 81 (698)
Q Consensus 4 ~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 81 (698)
+|++|++++........ ...-..+|+|+.|.+.+-.+... ......++++|+.||+++++++.. .+++.+++|++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 45555655543221111 11122356666666665544321 112223556666666666655533 445566666666
Q ss_pred ECCCCCCCCcccchhccCCCCCCEEeCcCcc
Q 047203 82 DLTGNSFLGGRLSRNLGKLCNLRTLKLSRNS 112 (698)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 112 (698)
.+.+=.+........+.++++|++||+|...
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 6655554333334455556666666666543
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.82 E-value=6.5e-06 Score=75.27 Aligned_cols=66 Identities=21% Similarity=0.201 Sum_probs=32.5
Q ss_pred hccCCCCEEeCCCCccccc----CCccccCCCCCCeEeccCCcccccCCcCcc------CCCCCCeEecccceeee
Q 047203 595 TRLIHLGTLNLSQNHLVGK----IPTQIGKLEWLESLDLSKNKLSGSIPPSMV------SLTFMNHLNLSYNNLSG 660 (698)
Q Consensus 595 ~~l~~L~~L~l~~n~~~~~----~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~------~l~~L~~L~l~~n~~~~ 660 (698)
..+++|+.|+|.+|.++-. +..++...+.|++|.+..|-++....+.+. -.|+|..|-..+|...+
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 3445666666666655422 123334445566666666655544332221 13555555555555443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=6.1e-06 Score=89.92 Aligned_cols=199 Identities=24% Similarity=0.295 Sum_probs=127.4
Q ss_pred CCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCccccc-------------CCccc--cCCCCCcEEECCCCCCCCcc
Q 047203 28 TSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGD-------------IPDGF--SSLNSLQQLDLTGNSFLGGR 92 (698)
Q Consensus 28 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------~~~~~--~~l~~L~~L~l~~~~~~~~~ 92 (698)
-++...++.+........+.+.... |+.|.+.+-...+. +-..+ ..-.+|++|++++.......
T Consensus 60 f~ltki~l~~~~~~~~~~~~l~~~~-L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~ 138 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQTLEMLRKQD-LESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNG 138 (699)
T ss_pred heeEEeeccceecchhHHHHHhhcc-ccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhcc
Confidence 4466677777666544444444444 88888876432111 00111 11258999999998766566
Q ss_pred cchhcc-CCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeee-c
Q 047203 93 LSRNLG-KLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVG-S 170 (698)
Q Consensus 93 ~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~-~ 170 (698)
.+..++ .+|+|++|.+++-.+.... |. .-|.++|+|..||++++.++.. ..++++++|+.|.+.+-.+.. .
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~d---F~--~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~ 211 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDD---FS--QLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQ 211 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchh---HH--HHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchh
Confidence 666665 4899999999987654322 21 2245566899999999988866 678888999988887765542 1
Q ss_pred CCCCCcCcccCCeeeccCcccCccc-------cccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEec
Q 047203 171 IPPSIGNLTFLKELYLSSNQMNGFP-------ESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISL 234 (698)
Q Consensus 171 ~~~~l~~l~~L~~L~l~~~~~~~~~-------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 234 (698)
.-..+..+++|+.||+++......+ +--..+|+|+.||.++..+...........=++|+.+.+
T Consensus 212 ~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 212 DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 1124678899999999877644422 122448899999999887766555444444455555443
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=7.5e-05 Score=74.81 Aligned_cols=54 Identities=11% Similarity=0.035 Sum_probs=27.6
Q ss_pred CCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCC
Q 047203 420 ISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN 479 (698)
Q Consensus 420 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n 479 (698)
+..++.|++++|.+... | .-+++|++|.+++|.-....|..+ .++|+.|.+++|
T Consensus 51 ~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 45566666666655422 2 123356666666554333444333 245666666665
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=1.9e-05 Score=51.93 Aligned_cols=36 Identities=44% Similarity=0.702 Sum_probs=19.1
Q ss_pred CCCeEeccCCcccccCCcCccCCCCCCeEecccceee
Q 047203 623 WLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 659 (698)
Q Consensus 623 sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 659 (698)
+|++|++++|.+. .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555666666555 33444556666666666666554
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=9.6e-05 Score=64.96 Aligned_cols=85 Identities=20% Similarity=0.207 Sum_probs=63.0
Q ss_pred CCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccC-ChhhccCCCCCEE
Q 047203 445 LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI-PPELCKLSALHIL 523 (698)
Q Consensus 445 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L 523 (698)
-+...+++++|.+. ....|..++.|++|.+.+|+|+ .+...+...+|.|+.|.+.+|.+.... ...+..||.|++|
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 45667788888874 3356778888888888888888 666666666888888888888875321 2356788889999
Q ss_pred ECCCCcCcc
Q 047203 524 DLSHNNLSG 532 (698)
Q Consensus 524 ~l~~~~~~~ 532 (698)
.+-+|++..
T Consensus 119 tll~Npv~~ 127 (233)
T KOG1644|consen 119 TLLGNPVEH 127 (233)
T ss_pred eecCCchhc
Confidence 988888763
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=3.6e-05 Score=50.63 Aligned_cols=38 Identities=37% Similarity=0.571 Sum_probs=21.6
Q ss_pred CCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccc
Q 047203 28 TSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQG 66 (698)
Q Consensus 28 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 66 (698)
++|++|++++|.|+. +|..+++|++|++|++++|.+.+
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 356666666666663 34446666666666666666553
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.65 E-value=0.00022 Score=60.97 Aligned_cols=101 Identities=17% Similarity=0.216 Sum_probs=33.5
Q ss_pred CCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEE
Q 047203 372 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLI 451 (698)
Q Consensus 372 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 451 (698)
+++|+.+.+.. .+......+|.++++|+.+.+.++ +.......|.++++++.+.+.. .+.......|..+++++.+.
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 44445544442 232233334444444555554442 3323333444444445444433 22222233344444444444
Q ss_pred ccCCeeeeeCCCCCCCCCCCCEEEcC
Q 047203 452 LCNNHISGEVPPSLKNCSMMDSLDLG 477 (698)
Q Consensus 452 l~~~~~~~~~~~~l~~~~~L~~L~L~ 477 (698)
+..+ +.......|.++ +++.+.+.
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cCcc-ccEEchhhhcCC-CceEEEEC
Confidence 4332 222333334443 44444444
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.60 E-value=0.00018 Score=61.57 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=49.5
Q ss_pred cccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCC
Q 047203 392 SIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMM 471 (698)
Q Consensus 392 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 471 (698)
+|.++++|+.+.+.+ .+.......|..+++|+.+.+.++ +.......|..+++++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455566666666654 344344455666666666666654 4444445555555666666654 3222344455556666
Q ss_pred CEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCC
Q 047203 472 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSAL 520 (698)
Q Consensus 472 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 520 (698)
+.+.+..+ +. .++...+.++ +++.+.+.+ .+.......|.++++|
T Consensus 84 ~~i~~~~~-~~-~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-IT-EIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--B-EEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-cc-EEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666543 32 4444444444 555555544 2222333344444444
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.59 E-value=1.8e-06 Score=70.34 Aligned_cols=113 Identities=20% Similarity=0.219 Sum_probs=63.8
Q ss_pred CCCEEEccCCcCCCC--CCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEE
Q 047203 374 FLTDLDISFNSLNGS--VPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLI 451 (698)
Q Consensus 374 ~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 451 (698)
.+..++++.|++... ....+.....|...++++|.+....+..-..++..+.+++.+|.+.+ .|..+..+++|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcc
Confidence 355566666655421 11122334556666777777664443434445566677777776663 344466667777777
Q ss_pred ccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhh
Q 047203 452 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWI 489 (698)
Q Consensus 452 l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~ 489 (698)
++.|.+. ..|..+..+.++-.|+..+|.+. .++..+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl 142 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL 142 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence 7666665 34444444666666666666665 555553
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.30 E-value=1.6e-05 Score=85.94 Aligned_cols=60 Identities=25% Similarity=0.244 Sum_probs=30.4
Q ss_pred CCCCCEEEcCCCc-CcccCchhhhhcCCCCcEEEccCCccccc--CChhhccCCCCCEEECCC
Q 047203 468 CSMMDSLDLGDNQ-LSGNIPAWIGESMPSLSILRLRSNYFNGT--IPPELCKLSALHILDLSH 527 (698)
Q Consensus 468 ~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~ 527 (698)
|++|++|.+.+|. +++..-..+...++.|+.|++++|..... +.....++++|+.|.+..
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 5566666655555 45444445555566666666666654211 222234455555544433
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=1.7e-05 Score=72.84 Aligned_cols=101 Identities=30% Similarity=0.247 Sum_probs=78.0
Q ss_pred CCcceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccC-CccccCCCCCcE
Q 047203 2 LRSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDI-PDGFSSLNSLQQ 80 (698)
Q Consensus 2 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~ 80 (698)
|.+++.|++.+|++.++. .+.+++.|++|.|+-|.|+.. ..|..|++|+.|.|..|.|.+.. ...+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 467888999999998776 356889999999999999853 45789999999999999987542 355788999999
Q ss_pred EECCCCCCCCccc----chhccCCCCCCEEe
Q 047203 81 LDLTGNSFLGGRL----SRNLGKLCNLRTLK 107 (698)
Q Consensus 81 L~l~~~~~~~~~~----~~~~~~l~~L~~L~ 107 (698)
|-+..|....... ...+..+|+|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9998876332222 23466788888876
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.99 E-value=6e-05 Score=81.42 Aligned_cols=231 Identities=16% Similarity=0.084 Sum_probs=119.3
Q ss_pred CCCccEEEcccCc-cccc-cCccccccCCCcEEEccCC-eeeeeC----CCCCCCCCCCCEEEcCCCc-CcccCchhhhh
Q 047203 420 ISSLYILDMSNNT-LSGE-IPDSIGCLLSVRFLILCNN-HISGEV----PPSLKNCSMMDSLDLGDNQ-LSGNIPAWIGE 491 (698)
Q Consensus 420 l~~L~~L~L~~n~-~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~l~~~~~L~~L~L~~n~-~~~~~~~~~~~ 491 (698)
++.|+.+.+.++. +... .......++.|+.|+++++ ...... ......++.|+.++++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4555555555552 2211 1122344566666666652 111011 1234567889999999988 77666667777
Q ss_pred cCCCCcEEEccCCc-cccc-CChhhccCCCCCEEECCCCcCccC--CCcccccccCCCcCCCCCccc---ccce-----E
Q 047203 492 SMPSLSILRLRSNY-FNGT-IPPELCKLSALHILDLSHNNLSGF--IPSCVGNFSRMKIEPPDSVEY---EGSL-----Q 559 (698)
Q Consensus 492 ~l~~L~~L~l~~~~-~~~~-~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~~~~~~~~~---~~~~-----~ 559 (698)
.+++|+.|.+.+|. +++. +......+++|++|+++.|..... +.....++++++.+....... .... .
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 79999999999898 4533 344567789999999999976522 223334455554433222221 0000 0
Q ss_pred Eee-cccceeeeccccccCeEEcCCCcCCccC-ChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccc-
Q 047203 560 VVL-KGTQYVFYSTLYLVNLMDLSSNNLSGEM-PVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSG- 636 (698)
Q Consensus 560 ~~~-~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~- 636 (698)
... +.........++.++.+.+..+.+.+.. ...+.+|+.|. ..+.. ......+++.|+++.|....
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~---------~~~~~~~l~~L~l~~~~~~t~ 416 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLEL---------RLCRSDSLRVLNLSDCRLVTD 416 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHH---------HhccCCccceEecccCccccc
Confidence 000 1222333344444444444444432221 12233333331 11100 01111226888888886542
Q ss_pred cCCcCccC-CCCCCeEecccceeee
Q 047203 637 SIPPSMVS-LTFMNHLNLSYNNLSG 660 (698)
Q Consensus 637 ~~~~~l~~-l~~L~~L~l~~n~~~~ 660 (698)
..-..+.. +..++.+++.+++...
T Consensus 417 ~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 417 KGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred cchHHHhhhhhccccCCccCccccc
Confidence 22222222 6777778888877664
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.96 E-value=0.0005 Score=63.40 Aligned_cols=115 Identities=25% Similarity=0.247 Sum_probs=67.0
Q ss_pred CCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCC-CCcccchhccCCCCCCEEeCcCccCCCccchhhc
Q 047203 44 IPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSF-LGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFIN 122 (698)
Q Consensus 44 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 122 (698)
+..-...+..|+.|.+.+..++.. ..|-.+++|++|.++.|.+ ....+..-..++++|++|++++|++.. +.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-----ls 107 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-----LS 107 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-----cc
Confidence 333344556666666665555422 2244567778888877732 222333334455888888888887764 22
Q ss_pred cccccccCCCCcEEEccCCccccc---CCccccCCCCCcEEEccCc
Q 047203 123 GLSECTNSSLLEKLELGFNQLTGD---LPNSLGYLKNLRYLELWDN 165 (698)
Q Consensus 123 ~l~~~~~~~~L~~L~l~~~~i~~~---~~~~~~~l~~L~~L~l~~~ 165 (698)
.+..+..+.+|..|++.+|..+.. .-..|..++.|++|+-...
T Consensus 108 tl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 108 TLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred ccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 333333444677888888765542 2345667788888765543
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=4.1e-05 Score=70.46 Aligned_cols=101 Identities=24% Similarity=0.201 Sum_probs=72.6
Q ss_pred CCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEE
Q 047203 420 ISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSIL 499 (698)
Q Consensus 420 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 499 (698)
+.+.++|+++||.+.++. .+..++.|+.|.|+-|.|+. ...+..|++|++|+|..|.|.+.-......++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 456778888888887653 35678888888888888852 34678888899999988888733333445668899999
Q ss_pred EccCCcccccCC-----hhhccCCCCCEEE
Q 047203 500 RLRSNYFNGTIP-----PELCKLSALHILD 524 (698)
Q Consensus 500 ~l~~~~~~~~~~-----~~l~~l~~L~~L~ 524 (698)
.|..|+=.+..+ ..+.-+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 998887544322 2456678888876
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.85 E-value=0.00053 Score=63.24 Aligned_cols=87 Identities=23% Similarity=0.263 Sum_probs=40.4
Q ss_pred cCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccC--ccccccCccccccCCCcEEEccCCeeeee-CCCCCCCCCC
Q 047203 394 GNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNN--TLSGEIPDSIGCLLSVRFLILCNNHISGE-VPPSLKNCSM 470 (698)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 470 (698)
..+..|+.+.+.++.+++. ..|..+++|++|.++.| ++.....-....+|+|+++++++|.+... ....+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3345555555555554422 22445566666666666 33322222223345666666666655410 1112333444
Q ss_pred CCEEEcCCCcCc
Q 047203 471 MDSLDLGDNQLS 482 (698)
Q Consensus 471 L~~L~L~~n~~~ 482 (698)
|..|++.+|..+
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 555555555443
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.10 E-value=0.0018 Score=57.29 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=65.5
Q ss_pred cCeEEcCCCcCCccCChhhhccCCCCEEeCCCCccc-ccCCccccC-CCCCCeEeccCC-cccccCCcCccCCCCCCeEe
Q 047203 576 VNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLV-GKIPTQIGK-LEWLESLDLSKN-KLSGSIPPSMVSLTFMNHLN 652 (698)
Q Consensus 576 L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~-l~sL~~L~l~~~-~~~~~~~~~l~~l~~L~~L~ 652 (698)
++.+|-++..|..+.-+-+..++.++.|.+.+|+-- +...+.+.+ .++|+.|+|++| .|+....+++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 477899999988787778888999999999999743 222233333 489999999988 66666778888999999999
Q ss_pred cccceee
Q 047203 653 LSYNNLS 659 (698)
Q Consensus 653 l~~n~~~ 659 (698)
|.+=+..
T Consensus 183 l~~l~~v 189 (221)
T KOG3864|consen 183 LYDLPYV 189 (221)
T ss_pred hcCchhh
Confidence 9875443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.46 E-value=0.017 Score=31.35 Aligned_cols=12 Identities=67% Similarity=0.822 Sum_probs=4.8
Q ss_pred CCeEeccCCccc
Q 047203 624 LESLDLSKNKLS 635 (698)
Q Consensus 624 L~~L~l~~~~~~ 635 (698)
|++|++++|++.
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444333
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.25 E-value=0.026 Score=30.58 Aligned_cols=17 Identities=41% Similarity=0.579 Sum_probs=7.4
Q ss_pred CCeeeccCcccCccccc
Q 047203 181 LKELYLSSNQMNGFPES 197 (698)
Q Consensus 181 L~~L~l~~~~~~~~~~~ 197 (698)
|++|++++|+++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 34444444444444433
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.64 E-value=0.00035 Score=73.03 Aligned_cols=109 Identities=25% Similarity=0.274 Sum_probs=57.3
Q ss_pred CccEEEcccCcccccc----CccccccCCCcEEEccCCeeeeeCC----CCCCCC-CCCCEEEcCCCcCcccCch----h
Q 047203 422 SLYILDMSNNTLSGEI----PDSIGCLLSVRFLILCNNHISGEVP----PSLKNC-SMMDSLDLGDNQLSGNIPA----W 488 (698)
Q Consensus 422 ~L~~L~L~~n~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~L~~n~~~~~~~~----~ 488 (698)
.+..+.+.+|.+.... ...+...++|..|++++|.++.... ..+... ..+++|.+..|.+++.... .
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 3777788888776432 2334446777777777777652211 122332 4456666666666543322 2
Q ss_pred hhhcCCCCcEEEccCCccccc----CChhhc----cCCCCCEEECCCCcCc
Q 047203 489 IGESMPSLSILRLRSNYFNGT----IPPELC----KLSALHILDLSHNNLS 531 (698)
Q Consensus 489 ~~~~l~~L~~L~l~~~~~~~~----~~~~l~----~l~~L~~L~l~~~~~~ 531 (698)
+.. ...++.++++.|.+... ++..+. ...++++|.+.+|.++
T Consensus 168 L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 168 LEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred Hhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 222 45666666666655311 122222 3455566666665544
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.92 E-value=0.013 Score=52.11 Aligned_cols=81 Identities=22% Similarity=0.172 Sum_probs=38.8
Q ss_pred CcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccC-chhhhhcCCCCcEEEccCCc-ccccCChhhccCCCCCEEE
Q 047203 447 VRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI-PAWIGESMPSLSILRLRSNY-FNGTIPPELCKLSALHILD 524 (698)
Q Consensus 447 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~ 524 (698)
++.++-+++.|....-..+.+++.++.|.+.+|.-.+.. -..+..-.++|+.|+|++|+ |++.-...+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 334444444444333344445555555555555422111 11122224566666666664 3433444556666666666
Q ss_pred CCC
Q 047203 525 LSH 527 (698)
Q Consensus 525 l~~ 527 (698)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.45 E-value=0.14 Score=25.70 Aligned_cols=15 Identities=33% Similarity=0.507 Sum_probs=5.6
Q ss_pred cCCeeeccCcccCcc
Q 047203 180 FLKELYLSSNQMNGF 194 (698)
Q Consensus 180 ~L~~L~l~~~~~~~~ 194 (698)
+|++|++++|+++.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344555555544443
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.11 E-value=0.001 Score=69.58 Aligned_cols=186 Identities=27% Similarity=0.283 Sum_probs=91.2
Q ss_pred CcEEECCCCCCCCC----CCccccCCCCCCEEEcccCcccccCCcc----ccCC-CCCcEEECCCCCCCCc---ccchhc
Q 047203 30 LQVLDLSNNGFNSK----IPHWLFNITRLSSLDLNTNDLQGDIPDG----FSSL-NSLQQLDLTGNSFLGG---RLSRNL 97 (698)
Q Consensus 30 L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~---~~~~~~ 97 (698)
+.++.|.+|.+... +..++....+|..|++++|.+.+.-... +... ..+++|.+..|.+... .....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66677777766543 3334556677777777777665321111 2221 4556666666653221 223444
Q ss_pred cCCCCCCEEeCcCccCCCccchhh-ccccc-cccCCCCcEEEccCCccccc----CCccccCCCC-CcEEEccCceeeec
Q 047203 98 GKLCNLRTLKLSRNSISGEVSDFI-NGLSE-CTNSSLLEKLELGFNQLTGD----LPNSLGYLKN-LRYLELWDNSFVGS 170 (698)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~-~~~~~~L~~L~l~~~~i~~~----~~~~~~~l~~-L~~L~l~~~~~~~~ 170 (698)
.....++.++++.|.+.......+ ..+.+ +....+++.|.+++|.++.. ...++...+. ++.+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 556667777777666542211111 11111 12233566666666655422 1122333333 44566666554422
Q ss_pred ----CCCCCcCc-ccCCeeeccCcccCc-----cccccCCCCCCcEEEccCCeee
Q 047203 171 ----IPPSIGNL-TFLKELYLSSNQMNG-----FPESFGQLSAIEVLDLDENQWE 215 (698)
Q Consensus 171 ----~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~ 215 (698)
....+..+ ..+++++++.|.++. +...+..++.++.+.+..|.+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 11122233 455666666666554 3344555556666666665544
No 78
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=87.75 E-value=2.2 Score=43.50 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=39.5
Q ss_pred cCeEEcCCCcCCccCChh---hhccCCCCEEeCCCCcccc----cCCccccCCCCCCeEeccCCccc
Q 047203 576 VNLMDLSSNNLSGEMPVE---LTRLIHLGTLNLSQNHLVG----KIPTQIGKLEWLESLDLSKNKLS 635 (698)
Q Consensus 576 L~~l~l~~n~~~~~~~~~---l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~sL~~L~l~~~~~~ 635 (698)
++++.++.|......... +.+-+.+.+|+|++|.... .+|.+++....++.+..+.|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 466777777765443333 2334678888888887653 35677777777777777777766
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=86.61 E-value=0.11 Score=28.86 Aligned_cols=13 Identities=46% Similarity=0.713 Sum_probs=4.9
Q ss_pred CCCEEeCCCCccc
Q 047203 599 HLGTLNLSQNHLV 611 (698)
Q Consensus 599 ~L~~L~l~~n~~~ 611 (698)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.52 E-value=0.66 Score=26.21 Aligned_cols=20 Identities=40% Similarity=0.390 Sum_probs=10.2
Q ss_pred CCCCEEeCcCccCCCccchh
Q 047203 101 CNLRTLKLSRNSISGEVSDF 120 (698)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~ 120 (698)
++|++|++++|+++.+....
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 44555555555555444433
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.52 E-value=0.66 Score=26.21 Aligned_cols=20 Identities=40% Similarity=0.390 Sum_probs=10.2
Q ss_pred CCCCEEeCcCccCCCccchh
Q 047203 101 CNLRTLKLSRNSISGEVSDF 120 (698)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~ 120 (698)
++|++|++++|+++.+....
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCCcCCHHH
Confidence 44555555555555444433
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.06 E-value=0.6 Score=26.37 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=8.3
Q ss_pred CCCCEEEcccCccccc
Q 047203 52 TRLSSLDLNTNDLQGD 67 (698)
Q Consensus 52 ~~L~~L~l~~~~~~~~ 67 (698)
++|++|+|++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4455555555555533
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.06 E-value=0.6 Score=26.37 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=8.3
Q ss_pred CCCCEEEcccCccccc
Q 047203 52 TRLSSLDLNTNDLQGD 67 (698)
Q Consensus 52 ~~L~~L~l~~~~~~~~ 67 (698)
++|++|+|++|.+...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 4455555555555533
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.52 E-value=0.019 Score=52.07 Aligned_cols=94 Identities=19% Similarity=0.208 Sum_probs=73.8
Q ss_pred CCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccch
Q 047203 16 PIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSR 95 (698)
Q Consensus 16 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 95 (698)
+.+|. ..+..+...++||++.|+.- .+...|+.+..|..|+++.|.+. ..|+.+.....+++++...|.. ...|.
T Consensus 31 s~~~v-~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~--~~~p~ 105 (326)
T KOG0473|consen 31 SEIPV-REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH--SQQPK 105 (326)
T ss_pred cccch-hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch--hhCCc
Confidence 34443 55667888999999999875 45566888888999999988877 6788888888888888877764 56788
Q ss_pred hccCCCCCCEEeCcCccCC
Q 047203 96 NLGKLCNLRTLKLSRNSIS 114 (698)
Q Consensus 96 ~~~~l~~L~~L~l~~~~~~ 114 (698)
.+++.++++++++.++.+.
T Consensus 106 s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccccCCcchhhhccCcch
Confidence 8889999999988887654
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.66 E-value=0.029 Score=50.86 Aligned_cols=83 Identities=18% Similarity=0.153 Sum_probs=70.4
Q ss_pred CCcceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEE
Q 047203 2 LRSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQL 81 (698)
Q Consensus 2 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 81 (698)
+.....||++.+++-.+...+ ..++.+..|+++.|.+. .+|..+.....++++++..|+.+ ..|..+...++++++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~--s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNF--SILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHHhhccch--HHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 456778999998876666534 44588999999999987 68999999999999999998887 789999999999999
Q ss_pred ECCCCCC
Q 047203 82 DLTGNSF 88 (698)
Q Consensus 82 ~l~~~~~ 88 (698)
+.-++.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 9988874
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=78.12 E-value=4.2 Score=41.57 Aligned_cols=63 Identities=22% Similarity=0.220 Sum_probs=44.5
Q ss_pred CCCCEEeCCCCcccccCC---ccccCCCCCCeEeccCCcccc----cCCcCccCCCCCCeEecccceeee
Q 047203 598 IHLGTLNLSQNHLVGKIP---TQIGKLEWLESLDLSKNKLSG----SIPPSMVSLTFMNHLNLSYNNLSG 660 (698)
Q Consensus 598 ~~L~~L~l~~n~~~~~~~---~~l~~l~sL~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~~~~ 660 (698)
.-+.++.++.|+...... ..+..-+.+++|++++|.... .+|+.++.-.+++.+..+.|....
T Consensus 413 g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~ 482 (553)
T KOG4242|consen 413 GVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPED 482 (553)
T ss_pred ccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccc
Confidence 457788888887764332 333445788999999998764 366777777888888888876554
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.37 E-value=5.6 Score=22.54 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=8.3
Q ss_pred CCCCEEeCCCCccc
Q 047203 598 IHLGTLNLSQNHLV 611 (698)
Q Consensus 598 ~~L~~L~l~~n~~~ 611 (698)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=64.82 E-value=2.5 Score=24.43 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=7.8
Q ss_pred CCCEEeCCCCcccc
Q 047203 599 HLGTLNLSQNHLVG 612 (698)
Q Consensus 599 ~L~~L~l~~n~~~~ 612 (698)
+|++|+|++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45555566555543
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=58.44 E-value=6.7 Score=22.19 Aligned_cols=17 Identities=53% Similarity=0.763 Sum_probs=12.5
Q ss_pred cCCeeeccCcccCcccc
Q 047203 180 FLKELYLSSNQMNGFPE 196 (698)
Q Consensus 180 ~L~~L~l~~~~~~~~~~ 196 (698)
+|+.|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57777777777777764
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=50.86 E-value=8.7 Score=21.59 Aligned_cols=11 Identities=45% Similarity=0.866 Sum_probs=4.9
Q ss_pred CCcEEECCCCC
Q 047203 77 SLQQLDLTGNS 87 (698)
Q Consensus 77 ~L~~L~l~~~~ 87 (698)
+|++|++++|.
T Consensus 3 ~L~~L~l~~C~ 13 (26)
T smart00367 3 NLRELDLSGCT 13 (26)
T ss_pred CCCEeCCCCCC
Confidence 44444444443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.84 E-value=21 Score=37.64 Aligned_cols=64 Identities=27% Similarity=0.207 Sum_probs=36.4
Q ss_pred ccccccCeEEcCCCcCCcc--CChhhhccCCCCEEeCCCC--cccccCCccccC--CCCCCeEeccCCcccc
Q 047203 571 STLYLVNLMDLSSNNLSGE--MPVELTRLIHLGTLNLSQN--HLVGKIPTQIGK--LEWLESLDLSKNKLSG 636 (698)
Q Consensus 571 ~~~~~L~~l~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n--~~~~~~~~~l~~--l~sL~~L~l~~~~~~~ 636 (698)
.+.+.+..+++++|++-.. +...-..-+.|+.|+|++| .+.. ...+.+ ..-|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 3455667777888877421 1111223377888888888 3331 122222 2457788888887763
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.32 E-value=22 Score=37.44 Aligned_cols=81 Identities=25% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCCCCCcEEECCCCCCCCC--CCccccCCCCCCEEEcccC--cccccCCcccc--CCCCCcEEECCCCCCCCccc--chh
Q 047203 25 LNFTSLQVLDLSNNGFNSK--IPHWLFNITRLSSLDLNTN--DLQGDIPDGFS--SLNSLQQLDLTGNSFLGGRL--SRN 96 (698)
Q Consensus 25 ~~~~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~--~~~ 96 (698)
.+++.+..++|++|++... +..--..-++|+.|+|++| .+.. ...+. +...|+.|-+.+|++.+... ...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 4678888889999987532 2222245688999999988 3331 11122 33578888899988643221 122
Q ss_pred cc----CCCCCCEEe
Q 047203 97 LG----KLCNLRTLK 107 (698)
Q Consensus 97 ~~----~l~~L~~L~ 107 (698)
+. .+|+|..||
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 22 578887775
Done!