Query 047203
Match_columns 698
No_of_seqs 269 out of 3421
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 15:16:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.8E-69 1.6E-73 607.8 49.3 655 4-697 51-753 (768)
2 3rgz_A Protein brassinosteroid 100.0 8.7E-62 3E-66 548.6 47.3 610 1-663 75-744 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 6.4E-55 2.2E-59 489.1 42.9 593 6-664 7-627 (680)
4 3t6q_A CD180 antigen; protein- 100.0 9.7E-53 3.3E-57 465.1 45.1 540 6-665 15-566 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-52 8.2E-57 468.2 48.2 584 30-686 6-625 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.7E-51 1.6E-55 451.6 45.2 546 6-672 14-571 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.1E-49 3.8E-54 440.6 43.2 541 30-694 14-565 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-48 6.1E-53 431.0 38.6 535 29-685 12-560 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-47 6.6E-52 436.1 38.7 543 6-665 7-566 (844)
10 2z63_A TOLL-like receptor 4, v 100.0 1.5E-46 5E-51 413.0 36.9 522 5-668 9-540 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-45 3.8E-50 421.5 38.7 541 31-684 7-561 (844)
12 2z63_A TOLL-like receptor 4, v 100.0 7.4E-45 2.5E-49 399.4 37.8 497 3-639 28-535 (570)
13 4g8a_A TOLL-like receptor 4; l 100.0 1.6E-42 5.5E-47 386.6 43.1 542 7-664 35-585 (635)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-43 5.7E-48 386.5 34.2 498 5-665 7-516 (549)
15 2z81_A CD282 antigen, TOLL-lik 100.0 6.2E-42 2.1E-46 374.1 30.5 423 3-531 26-464 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-40 4E-45 361.1 27.8 457 6-533 3-483 (520)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-40 4.4E-45 360.8 26.0 461 31-637 3-483 (520)
18 4eco_A Uncharacterized protein 100.0 6.9E-41 2.4E-45 369.1 20.8 249 372-662 329-603 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 9.4E-39 3.2E-43 356.1 38.1 509 3-635 52-580 (635)
20 4eco_A Uncharacterized protein 100.0 8.1E-39 2.8E-43 352.6 29.2 159 349-532 434-601 (636)
21 4ecn_A Leucine-rich repeat pro 100.0 1.5E-39 5.1E-44 363.3 23.2 180 28-215 323-561 (876)
22 4ecn_A Leucine-rich repeat pro 100.0 1.3E-38 4.6E-43 355.5 29.0 202 3-215 323-608 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.6E-39 3.3E-43 348.7 24.5 468 27-667 30-518 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.5E-38 1.6E-42 343.4 29.3 458 4-533 32-512 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 8.4E-35 2.9E-39 309.7 30.5 176 6-193 13-194 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 7E-35 2.4E-39 310.4 28.7 387 133-667 12-416 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 5.2E-35 1.8E-39 307.8 22.6 409 26-675 9-422 (454)
28 2id5_A Lingo-1, leucine rich r 100.0 2.7E-33 9.1E-38 299.7 25.5 344 331-685 15-358 (477)
29 1jl5_A Outer protein YOPM; leu 100.0 5E-33 1.7E-37 292.6 25.6 413 2-542 10-440 (454)
30 1o6v_A Internalin A; bacterial 100.0 4.5E-31 1.6E-35 280.8 33.4 170 396-612 220-389 (466)
31 1o6v_A Internalin A; bacterial 100.0 8.1E-31 2.8E-35 278.9 32.2 61 153-216 44-104 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 6.4E-31 2.2E-35 281.2 29.0 231 372-635 103-333 (477)
33 1ogq_A PGIP-2, polygalacturona 100.0 2E-31 6.8E-36 267.2 21.6 260 397-693 50-313 (313)
34 3bz5_A Internalin-J, INLJ; leu 100.0 3.9E-30 1.3E-34 270.8 28.4 366 23-498 37-403 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 2.9E-30 1E-34 268.3 24.8 285 348-686 93-377 (390)
36 3bz5_A Internalin-J, INLJ; leu 100.0 3.6E-30 1.2E-34 271.1 24.7 354 253-665 40-393 (457)
37 3oja_B Anopheles plasmodium-re 100.0 1.3E-29 4.4E-34 277.8 24.6 285 348-686 99-383 (597)
38 4fmz_A Internalin; leucine ric 100.0 8.7E-29 3E-33 253.1 28.4 258 349-659 89-346 (347)
39 1ogq_A PGIP-2, polygalacturona 100.0 9.7E-30 3.3E-34 254.9 19.2 255 373-663 50-308 (313)
40 3o6n_A APL1; leucine-rich repe 100.0 3.1E-29 1.1E-33 260.5 23.3 309 348-684 45-353 (390)
41 1xku_A Decorin; proteoglycan, 100.0 2.3E-28 7.7E-33 247.8 27.4 287 330-657 34-330 (330)
42 4fmz_A Internalin; leucine ric 100.0 1.8E-28 6.3E-33 250.7 27.0 275 347-675 65-339 (347)
43 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-28 8.2E-33 247.7 24.9 286 330-657 36-331 (332)
44 3oja_B Anopheles plasmodium-re 100.0 1.8E-28 6.2E-33 268.7 23.4 309 348-684 51-359 (597)
45 1xku_A Decorin; proteoglycan, 100.0 1.1E-26 3.8E-31 235.4 26.8 269 349-660 32-307 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-30 4.5E-35 278.0 -2.7 64 372-435 169-241 (461)
47 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-30 3.8E-35 278.5 -5.4 283 349-660 114-441 (461)
48 2ft3_A Biglycan; proteoglycan, 99.9 1E-26 3.5E-31 235.7 23.0 267 349-659 34-307 (332)
49 2z66_A Variable lymphocyte rec 99.9 6E-26 2.1E-30 227.4 22.3 234 397-663 28-265 (306)
50 2z80_A TOLL-like receptor 2, v 99.9 6E-27 2E-31 239.6 13.3 259 373-664 52-319 (353)
51 3ogk_B Coronatine-insensitive 99.9 2.3E-28 8E-33 269.3 -0.3 133 74-211 110-252 (592)
52 2z66_A Variable lymphocyte rec 99.9 1E-25 3.5E-30 225.7 18.6 277 351-665 10-293 (306)
53 3zyi_A Leucine-rich repeat-con 99.9 7.7E-25 2.6E-29 231.8 26.2 231 397-662 75-306 (452)
54 1ozn_A Reticulon 4 receptor; N 99.9 9.4E-26 3.2E-30 223.4 17.2 166 372-538 31-197 (285)
55 3ogk_B Coronatine-insensitive 99.9 4.1E-28 1.4E-32 267.4 0.1 409 50-528 110-548 (592)
56 4fcg_A Uncharacterized protein 99.9 1.5E-25 5.2E-30 225.6 18.8 234 372-658 80-313 (328)
57 3zyj_A Leucine-rich repeat-con 99.9 1E-24 3.5E-29 230.0 25.6 230 397-661 64-294 (440)
58 1ozn_A Reticulon 4 receptor; N 99.9 2.1E-25 7.3E-30 220.8 19.1 211 421-664 32-243 (285)
59 2z80_A TOLL-like receptor 2, v 99.9 8.7E-26 3E-30 231.0 16.5 278 329-638 33-317 (353)
60 3zyi_A Leucine-rich repeat-con 99.9 1E-24 3.5E-29 230.9 24.1 247 351-635 57-303 (452)
61 4fcg_A Uncharacterized protein 99.9 6.7E-25 2.3E-29 220.9 21.6 235 347-635 80-314 (328)
62 3zyj_A Leucine-rich repeat-con 99.9 1.1E-24 3.8E-29 229.7 24.2 229 373-635 64-292 (440)
63 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-26 1.1E-30 230.1 4.1 262 350-659 12-275 (317)
64 2p1m_B Transport inhibitor res 99.9 7.3E-28 2.5E-32 265.6 -8.8 155 371-526 370-539 (594)
65 2p1m_B Transport inhibitor res 99.9 9.9E-27 3.4E-31 256.5 -5.1 436 23-506 61-543 (594)
66 3o53_A Protein LRIM1, AGAP0063 99.9 3.1E-24 1E-28 215.6 11.8 255 375-675 12-268 (317)
67 3g06_A SSPH2 (leucine-rich rep 99.9 4.1E-22 1.4E-26 215.6 28.3 242 348-664 61-302 (622)
68 1wwl_A Monocyte differentiatio 99.9 2.3E-25 7.8E-30 223.3 1.2 81 575-660 229-310 (312)
69 2z62_A TOLL-like receptor 4, v 99.9 1.6E-22 5.6E-27 199.0 21.2 211 422-666 29-244 (276)
70 3oja_A Leucine-rich immune mol 99.9 3.2E-24 1.1E-28 228.0 8.6 236 372-654 33-270 (487)
71 3oja_A Leucine-rich immune mol 99.9 9.1E-24 3.1E-28 224.4 11.7 218 395-659 32-250 (487)
72 3g06_A SSPH2 (leucine-rich rep 99.9 8E-22 2.7E-26 213.4 25.8 248 327-646 61-308 (622)
73 1wwl_A Monocyte differentiatio 99.9 4.3E-24 1.5E-28 214.0 7.0 245 349-636 44-310 (312)
74 2o6q_A Variable lymphocyte rec 99.9 6.5E-22 2.2E-26 193.7 22.4 205 423-663 18-222 (270)
75 2o6q_A Variable lymphocyte rec 99.9 2.4E-21 8.1E-26 189.7 22.6 203 4-217 17-220 (270)
76 1p9a_G Platelet glycoprotein I 99.9 1.9E-21 6.5E-26 191.8 21.5 203 1-217 8-210 (290)
77 2z62_A TOLL-like receptor 4, v 99.9 2.3E-21 7.9E-26 190.7 20.9 210 397-637 28-239 (276)
78 1p9a_G Platelet glycoprotein I 99.9 5.2E-21 1.8E-25 188.7 19.8 204 393-660 6-209 (290)
79 3rfs_A Internalin B, repeat mo 99.9 2.6E-21 8.7E-26 189.6 17.4 182 442-665 60-241 (272)
80 2ast_B S-phase kinase-associat 99.9 1.4E-22 4.8E-27 206.0 8.1 253 375-667 49-314 (336)
81 3goz_A Leucine-rich repeat-con 99.9 1.2E-22 4E-27 208.2 5.1 105 353-458 3-122 (362)
82 3rfs_A Internalin B, repeat mo 99.9 4.5E-21 1.5E-25 187.9 15.6 210 394-647 38-247 (272)
83 2ca6_A RAN GTPase-activating p 99.8 1.7E-22 5.9E-27 209.2 1.5 189 442-662 91-319 (386)
84 4glp_A Monocyte differentiatio 99.8 5.6E-21 1.9E-25 191.2 11.5 203 396-660 90-308 (310)
85 2xwt_C Thyrotropin receptor; s 99.8 2.1E-20 7.2E-25 179.5 14.8 209 12-236 20-235 (239)
86 2ast_B S-phase kinase-associat 99.8 2.5E-21 8.5E-26 196.8 8.3 255 349-644 48-315 (336)
87 2xwt_C Thyrotropin receptor; s 99.8 2.7E-20 9.2E-25 178.7 13.9 132 397-531 31-169 (239)
88 3m19_A Variable lymphocyte rec 99.8 2.5E-19 8.4E-24 173.2 20.2 177 4-191 15-191 (251)
89 4glp_A Monocyte differentiatio 99.8 2.2E-20 7.4E-25 186.9 12.9 203 3-215 91-307 (310)
90 3m19_A Variable lymphocyte rec 99.8 2.4E-19 8.4E-24 173.3 19.7 180 446-661 15-194 (251)
91 3goz_A Leucine-rich repeat-con 99.8 1.8E-21 6.1E-26 199.3 4.8 157 379-535 4-184 (362)
92 1h6u_A Internalin H; cell adhe 99.8 1.8E-19 6.3E-24 179.5 18.6 192 2-216 40-231 (308)
93 1h6u_A Internalin H; cell adhe 99.8 2E-19 6.8E-24 179.3 17.3 194 393-635 37-230 (308)
94 2ca6_A RAN GTPase-activating p 99.8 2.2E-21 7.4E-26 201.0 0.9 253 371-655 30-339 (386)
95 4ay9_X Follicle-stimulating ho 99.8 1.2E-17 4.1E-22 169.9 19.7 241 350-632 11-256 (350)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 1.9E-18 6.4E-23 162.8 12.6 160 472-667 14-174 (220)
97 4ay9_X Follicle-stimulating ho 99.8 8.2E-18 2.8E-22 171.1 17.6 241 330-609 12-257 (350)
98 2o6s_A Variable lymphocyte rec 99.8 1.7E-17 5.8E-22 155.4 16.6 180 6-203 10-190 (208)
99 2o6s_A Variable lymphocyte rec 99.7 1.2E-17 4.2E-22 156.3 13.8 81 577-664 103-183 (208)
100 2v9t_B SLIT homolog 2 protein 99.7 3.4E-17 1.2E-21 154.2 16.2 156 472-663 14-169 (220)
101 1h6t_A Internalin B; cell adhe 99.7 6E-17 2.1E-21 159.8 16.9 78 577-660 137-214 (291)
102 1h6t_A Internalin B; cell adhe 99.7 5.5E-17 1.9E-21 160.1 16.4 186 8-216 29-214 (291)
103 3e6j_A Variable lymphocyte rec 99.7 9.3E-17 3.2E-21 152.4 16.3 156 471-663 21-176 (229)
104 2v9t_B SLIT homolog 2 protein 99.7 1.8E-16 6.2E-21 149.2 16.6 151 6-167 14-164 (220)
105 3cvr_A Invasion plasmid antige 99.7 9.3E-17 3.2E-21 171.5 16.0 187 398-645 60-253 (571)
106 3cvr_A Invasion plasmid antige 99.7 2.8E-16 9.7E-21 167.8 18.7 182 4-220 60-248 (571)
107 2xot_A Amphoterin-induced prot 99.7 6.9E-17 2.3E-21 165.0 12.7 177 31-217 21-204 (361)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 3.4E-16 1.2E-20 147.3 16.5 151 7-192 15-166 (220)
109 3sb4_A Hypothetical leucine ri 99.7 3.7E-17 1.3E-21 164.8 9.4 264 348-653 25-328 (329)
110 1m9s_A Internalin B; cell inva 99.7 5.6E-16 1.9E-20 167.6 18.2 171 443-660 41-211 (605)
111 4ezg_A Putative uncharacterize 99.7 2.5E-16 8.5E-21 145.8 12.6 153 467-660 42-195 (197)
112 2xot_A Amphoterin-induced prot 99.7 2.9E-16 1E-20 160.3 14.3 176 351-531 21-202 (361)
113 1m9s_A Internalin B; cell inva 99.7 4.3E-16 1.5E-20 168.5 16.2 189 5-216 23-211 (605)
114 3e6j_A Variable lymphocyte rec 99.7 1.5E-15 5.2E-20 144.0 17.4 149 31-190 22-170 (229)
115 4ezg_A Putative uncharacterize 99.7 6.4E-16 2.2E-20 143.0 13.3 154 25-193 41-195 (197)
116 1xeu_A Internalin C; cellular 99.6 4.2E-16 1.4E-20 151.1 10.9 79 577-661 109-187 (263)
117 1xeu_A Internalin C; cellular 99.6 4E-16 1.4E-20 151.2 10.4 169 27-216 18-186 (263)
118 1w8a_A SLIT protein; signaling 99.6 1.1E-15 3.9E-20 140.4 11.1 128 472-635 11-139 (192)
119 4fdw_A Leucine rich hypothetic 99.6 3.1E-14 1.1E-18 146.2 21.7 240 374-657 136-381 (401)
120 3sb4_A Hypothetical leucine ri 99.6 2.6E-15 8.9E-20 151.3 11.8 222 372-629 100-328 (329)
121 1dce_A Protein (RAB geranylger 99.6 1.1E-17 3.7E-22 179.9 -9.1 84 577-663 466-550 (567)
122 1w8a_A SLIT protein; signaling 99.6 1.5E-14 5.2E-19 132.9 12.7 132 497-663 11-143 (192)
123 2ell_A Acidic leucine-rich nuc 99.6 1.1E-14 3.6E-19 131.1 10.3 133 493-659 23-160 (168)
124 1dce_A Protein (RAB geranylger 99.6 1.8E-17 6.2E-22 178.2 -9.9 123 494-653 441-567 (567)
125 4fdw_A Leucine rich hypothetic 99.5 2.5E-13 8.5E-18 139.4 21.2 245 371-661 111-360 (401)
126 2je0_A Acidic leucine-rich nuc 99.5 1E-14 3.5E-19 128.2 9.3 129 493-655 16-149 (149)
127 4fs7_A Uncharacterized protein 99.5 5.1E-13 1.7E-17 138.1 22.7 63 586-651 331-393 (394)
128 2ell_A Acidic leucine-rich nuc 99.5 3.1E-14 1.1E-18 128.0 11.5 132 27-167 23-159 (168)
129 4fs7_A Uncharacterized protein 99.5 6.6E-13 2.3E-17 137.2 22.4 159 40-212 59-218 (394)
130 2wfh_A SLIT homolog 2 protein 99.5 1.2E-13 4.2E-18 126.7 14.8 86 577-662 57-142 (193)
131 2o6r_A Variable lymphocyte rec 99.5 1.3E-13 4.3E-18 125.1 13.5 87 577-663 55-141 (177)
132 2je0_A Acidic leucine-rich nuc 99.5 6.3E-14 2.2E-18 123.1 10.3 128 27-163 16-148 (149)
133 2wfh_A SLIT homolog 2 protein 99.5 4.1E-13 1.4E-17 123.2 14.3 127 472-635 13-139 (193)
134 4b8c_D Glucose-repressible alc 99.5 1.9E-14 6.4E-19 159.9 5.1 142 461-639 216-358 (727)
135 4b8c_D Glucose-repressible alc 99.5 1.6E-14 5.5E-19 160.5 4.3 154 372-536 172-334 (727)
136 2o6r_A Variable lymphocyte rec 99.4 7.4E-13 2.5E-17 120.0 13.7 130 472-637 10-139 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.4 3.8E-13 1.3E-17 121.7 10.2 84 575-660 65-154 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.4 8.3E-13 2.8E-17 119.5 9.5 132 466-635 16-153 (176)
139 4gt6_A Cell surface protein; l 99.3 2E-10 6.8E-15 118.6 25.0 134 388-529 256-389 (394)
140 4gt6_A Cell surface protein; l 99.3 1.5E-10 5.1E-15 119.5 22.1 79 573-656 310-388 (394)
141 1ds9_A Outer arm dynein; leuci 99.3 2.9E-14 1E-18 131.9 -5.8 133 28-172 18-157 (198)
142 3g39_A Variable lymphocyte rec 99.3 1.9E-11 6.6E-16 109.4 12.4 107 5-116 11-117 (170)
143 3g39_A Variable lymphocyte rec 99.3 1.8E-11 6.3E-16 109.6 11.9 91 575-665 31-121 (170)
144 1ds9_A Outer arm dynein; leuci 99.3 5E-14 1.7E-18 130.3 -5.1 128 493-659 47-185 (198)
145 2r9u_A Variable lymphocyte rec 99.3 3.7E-11 1.3E-15 107.9 12.4 106 6-116 15-120 (174)
146 3un9_A NLR family member X1; l 99.3 8.2E-14 2.8E-18 141.6 -5.8 163 469-659 101-283 (372)
147 2r9u_A Variable lymphocyte rec 99.2 3.6E-11 1.2E-15 108.0 11.0 88 576-663 35-122 (174)
148 3un9_A NLR family member X1; l 99.2 1.1E-12 3.9E-17 133.2 -1.3 166 469-661 72-254 (372)
149 4h09_A Hypothetical leucine ri 99.1 2.4E-08 8.2E-13 102.5 24.6 165 444-647 193-357 (379)
150 4h09_A Hypothetical leucine ri 99.1 3.7E-08 1.3E-12 101.0 25.4 77 132-212 47-123 (379)
151 2ifg_A High affinity nerve gro 98.9 5E-09 1.7E-13 106.2 11.2 104 7-115 12-117 (347)
152 2ifg_A High affinity nerve gro 98.9 5.4E-09 1.9E-13 105.9 10.9 103 498-635 12-116 (347)
153 2ra8_A Uncharacterized protein 98.8 2E-09 6.8E-14 108.2 5.6 59 441-502 168-227 (362)
154 2ra8_A Uncharacterized protein 98.8 5E-09 1.7E-13 105.3 5.8 64 153-216 250-321 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 2E-08 7E-13 90.9 0.9 67 593-659 88-164 (185)
156 3e4g_A ATP synthase subunit S, 98.4 3E-08 1E-12 86.9 0.0 86 574-659 61-152 (176)
157 1io0_A Tropomodulin; LRR prote 98.4 1E-07 3.4E-12 86.3 2.9 61 575-635 94-164 (185)
158 3e4g_A ATP synthase subunit S, 98.1 1.3E-06 4.5E-11 76.5 3.9 33 133-165 116-149 (176)
159 3rw6_A Nuclear RNA export fact 98.0 4.5E-06 1.6E-10 79.1 5.6 64 573-638 169-236 (267)
160 3rw6_A Nuclear RNA export fact 98.0 8E-07 2.7E-11 84.3 -0.2 85 579-664 148-238 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.4 4.9E-05 1.7E-09 67.9 1.6 83 576-658 72-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00019 6.5E-09 64.1 2.6 86 571-656 38-136 (197)
163 3rfe_A Platelet glycoprotein I 96.5 0.0045 1.5E-07 51.5 6.1 57 577-635 11-68 (130)
164 3rfe_A Platelet glycoprotein I 96.3 0.0077 2.6E-07 50.0 6.9 35 29-63 32-66 (130)
165 2lz0_A Uncharacterized protein 80.0 4.8 0.00016 31.0 6.5 49 583-632 5-53 (100)
166 2lz0_A Uncharacterized protein 73.6 7.7 0.00026 29.8 6.1 48 38-86 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.8e-69 Score=607.84 Aligned_cols=655 Identities=32% Similarity=0.454 Sum_probs=448.1
Q ss_pred cceEEeCCCCCCCC----CCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCc--cccCCCC
Q 047203 4 SLVELHLPNCNLPI----PPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPD--GFSSLNS 77 (698)
Q Consensus 4 ~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~ 77 (698)
+++.|+|+++.+.+ ++ ..+.++++|+.++++.+.+. ..|..|..+++|++|++++|.+.+..|. .++++++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~--~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~ 127 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVS--SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSG 127 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHH--HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTT
T ss_pred cEEEEECCCCCcCCccCccC--hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCC
Confidence 46667777666654 23 24456666777776666654 2455677777777777777777666666 6677777
Q ss_pred CcEEECCCCCCCCcccchh-ccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCC
Q 047203 78 LQQLDLTGNSFLGGRLSRN-LGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKN 156 (698)
Q Consensus 78 L~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~ 156 (698)
|++|++++|.+ ....+.. +.++++|++|++++|.+++..+..+..+. ++++|++|++++|.+.+..+ +..+++
T Consensus 128 L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~---~l~~L~~L~Ls~n~l~~~~~--~~~l~~ 201 (768)
T 3rgz_A 128 LKFLNVSSNTL-DFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD---GCGELKHLAISGNKISGDVD--VSRCVN 201 (768)
T ss_dssp CCEEECCSSEE-ECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT---CCTTCCEEECCSSEEESCCB--CTTCTT
T ss_pred CCEEECcCCcc-CCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhc---cCCCCCEEECCCCcccccCC--cccCCc
Confidence 77777777763 2233333 36677777777777766655444321111 22257777777776664433 256677
Q ss_pred CcEEEccCceeeecCCCCCcCcccCCeeeccCcccCc-cccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecc
Q 047203 157 LRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNG-FPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY 235 (698)
Q Consensus 157 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 235 (698)
|++|++++|.+.+..|. ++.+++|++|++++|.++. +|..+..+++|+.|++++|.+.+..+.. .+++|++|++.
T Consensus 202 L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~ 277 (768)
T 3rgz_A 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLA 277 (768)
T ss_dssp CCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECC
T ss_pred CCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECc
Confidence 77777777776655554 6677777777777777664 5666677777777777777665544431 45555555555
Q ss_pred cccccceeeeecCCCccC-CcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccc
Q 047203 236 KLSENISLIFNISSHWIP-PFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSN 314 (698)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 314 (698)
++ ......+..+.. +++|++|++++|.+....|.++..+++|++|++++|.+.+..+.......++|++|++++|
T Consensus 278 ~n----~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 278 EN----KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp SS----EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred CC----ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 41 111122223322 2445555555555444445555555555555555555443333332222244445555444
Q ss_pred cccccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhc-CCCCCCEEEccCCcCCCCCCccc
Q 047203 315 ELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQ-KIPFLTDLDISFNSLNGSVPKSI 393 (698)
Q Consensus 315 ~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~ 393 (698)
.+.+.++..+.. ...+|+.|++++|.+.+..+..+.. .+++|++|++++|.+.+..+..+
T Consensus 354 ~l~~~~p~~l~~-------------------l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 354 EFSGELPESLTN-------------------LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp EEEECCCTTHHH-------------------HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred ccCccccHHHHh-------------------hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 444433332211 0126777777777776666555443 25678888888887776677777
Q ss_pred cCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCE
Q 047203 394 GNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDS 473 (698)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 473 (698)
.++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 77888888888888877777777888888888888888887777777778888888888888887777777888888888
Q ss_pred EEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcc
Q 047203 474 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVE 553 (698)
Q Consensus 474 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~ 553 (698)
|++++|++.+.+|..+.. +++|+.|++++|++.+.+|..+..+++|++|++++|++.+.+|..+.....+.........
T Consensus 495 L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp EECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred EEccCCccCCcCChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 888888887777776655 8888888888888887788888888888888888888888777777665554433221100
Q ss_pred c--------------------------------------ccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhh
Q 047203 554 Y--------------------------------------EGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELT 595 (698)
Q Consensus 554 ~--------------------------------------~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~ 595 (698)
. .......+.+.....+..+++|+.||+++|.+++.+|..+.
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 653 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence 0 00000112233334566788999999999999999999999
Q ss_pred ccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecCCCCCccccCCCCc
Q 047203 596 RLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPS 675 (698)
Q Consensus 596 ~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~ 675 (698)
++++|+.|+|++|.+++.+|+.++.+++|++|++++|++.+.+|+.+..+++|+.|+|++|++++.+|..++++++..++
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~ 733 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGG
T ss_pred ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccCCCCCcCCCCCCCCccccC
Q 047203 676 IYEGNLALCGDPLPERCSEIDG 697 (698)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~ 697 (698)
|.||+.+|++|+. .|....|
T Consensus 734 -~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 734 -FLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp -GCSCTEEESTTSC-CCCSCC-
T ss_pred -hcCCchhcCCCCc-CCCCCcc
Confidence 9999999999998 9987765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8.7e-62 Score=548.61 Aligned_cols=610 Identities=31% Similarity=0.409 Sum_probs=526.7
Q ss_pred CCCcceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCc--cccCCCCCCEEEcccCcccccCCccc-cCCCC
Q 047203 1 MLRSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPH--WLFNITRLSSLDLNTNDLQGDIPDGF-SSLNS 77 (698)
Q Consensus 1 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~ 77 (698)
+|++|+.++++.+.+...+. .+.++++|++|+|++|.+++..|. .++++++|++|++++|.+.+..|..+ .++++
T Consensus 75 ~L~~L~~l~~~~~~~~~l~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 75 SLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TCTTCCEEECTTSCEEECCC--CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred ccCcccccCCcCCCcCCCch--hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence 36788999999888755444 678999999999999999988888 89999999999999999988888766 89999
Q ss_pred CcEEECCCCCCCCcccchh---ccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCC
Q 047203 78 LQQLDLTGNSFLGGRLSRN---LGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYL 154 (698)
Q Consensus 78 L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l 154 (698)
|++|++++|.+ .+..+.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+.+..+. ++.+
T Consensus 153 L~~L~Ls~n~l-~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--------~~l~~L~~L~Ls~n~l~~~~~~-l~~l 222 (768)
T 3rgz_A 153 LEVLDLSANSI-SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--------SRCVNLEFLDVSSNNFSTGIPF-LGDC 222 (768)
T ss_dssp CSEEECCSSCC-EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--------TTCTTCCEEECCSSCCCSCCCB-CTTC
T ss_pred CCEEECCCCcc-CCcCChhhhhhccCCCCCEEECCCCcccccCCc--------ccCCcCCEEECcCCcCCCCCcc-cccC
Confidence 99999999994 4444544 78999999999999988754331 3445899999999999977776 9999
Q ss_pred CCCcEEEccCceeeecCCCCCcCcccCCeeeccCcccCc-cccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEe
Q 047203 155 KNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNG-FPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEIS 233 (698)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 233 (698)
++|++|++++|.+.+..|..++.+++|++|++++|.++. +|.. .+++|++|++++|.+.+.++......+++|++|+
T Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred CCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 999999999999998888899999999999999999886 4443 8999999999999999877775555569999999
Q ss_pred cccccccceeeeecCCCccCCcceeEEEeccccCCccCCcc-ccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEec
Q 047203 234 LYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTW-LRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVG 312 (698)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 312 (698)
+.++ ......+..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.+....+..+....++|++|+++
T Consensus 301 Ls~n----~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 301 LSGN----HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp CCSS----EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred CcCC----cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 9873 233455667778899999999999988677765 99999999999999999988888888876699999999
Q ss_pred cccccccCCCCcC---CCCCCeEECCCCCCcCCCCCc---ccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCC
Q 047203 313 SNELSGRIPNSLG---FRFPGTVDLSSNSFEGPLPLW---SFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLN 386 (698)
Q Consensus 313 ~~~l~~~~~~~~~---~~~l~~l~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 386 (698)
+|.+.+..+.... .+.++.+++++|.+.+..+.. +++|+.|++++|.+.+..+..+.. +++|++|++++|.+.
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLE 455 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-CTTCCEEECCSSCCC
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-CCCCCEEECCCCccc
Confidence 9999988777664 578999999999998766654 568999999999999888877654 999999999999999
Q ss_pred CCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCC
Q 047203 387 GSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLK 466 (698)
Q Consensus 387 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 466 (698)
+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+..|..+.
T Consensus 456 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 88888999999999999999999988899999999999999999999988999999999999999999999999999999
Q ss_pred CCCCCCEEEcCCCcCcccCchhhhhcCCCCcE----------------------------------------------EE
Q 047203 467 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSI----------------------------------------------LR 500 (698)
Q Consensus 467 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~----------------------------------------------L~ 500 (698)
.+++|++|++++|++.+.+|..++. ...+.. ++
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGT-TTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred CCCCCCEEECCCCccCCcCChHHhc-ccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 9999999999999999999987765 332222 22
Q ss_pred ccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEE
Q 047203 501 LRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMD 580 (698)
Q Consensus 501 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 580 (698)
+..+.+.+.+|..+..+++|++|++++|.+++.+|..+++++.| +.|+
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L--------------------------------~~L~ 662 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL--------------------------------FILN 662 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC--------------------------------CEEE
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC--------------------------------CEEe
Confidence 33355555667778888889999999999988888888877777 8899
Q ss_pred cCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeee
Q 047203 581 LSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSG 660 (698)
Q Consensus 581 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 660 (698)
+++|.+++.+|..+.++++|+.|+|++|++++.+|+.+..+++|++|++++|++.+.+|+. .++.++....+.+|+-..
T Consensus 663 Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 663 LGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEE
T ss_pred CcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhc
Confidence 9999999999999999999999999999999999999999999999999999999999975 456677778888998765
Q ss_pred cCC
Q 047203 661 EIP 663 (698)
Q Consensus 661 ~~p 663 (698)
-.|
T Consensus 742 g~~ 744 (768)
T 3rgz_A 742 GYP 744 (768)
T ss_dssp STT
T ss_pred CCC
Confidence 433
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.4e-55 Score=489.10 Aligned_cols=593 Identities=22% Similarity=0.209 Sum_probs=428.8
Q ss_pred eEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCC
Q 047203 6 VELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG 85 (698)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 85 (698)
+.+++++++++.+|...+ +++++|++++|.+++..+.+|.++++|++|++++|.+.+..|.+|+++++|++|++++
T Consensus 7 ~~~~cs~~~L~~ip~~~~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP----TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSSCCSCSC----TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCccccccccC----CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 568888999988887443 7899999999999988778899999999999999999988899999999999999999
Q ss_pred CCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCc
Q 047203 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDN 165 (698)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 165 (698)
|.+ ....+..|+++++|++|++++|.++...+..|..+. +|++|++++|.+++..+..+..+++|++|++++|
T Consensus 83 n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 83 NEL-SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK------NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp SCC-CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCT------TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred Ccc-CccChhhhccCCCCCEEECCCCccCccChhHccccC------CCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 984 333344689999999999999998877766666655 7999999999888888888888999999999998
Q ss_pred eeeecCCCCCc--CcccCCeeeccCcccCc-cccccCCCCCCcEEEccCCeeeeecCchhh--cCCCCccEEeccccccc
Q 047203 166 SFVGSIPPSIG--NLTFLKELYLSSNQMNG-FPESFGQLSAIEVLDLDENQWEGIITETHF--RNLSNLKEISLYKLSEN 240 (698)
Q Consensus 166 ~~~~~~~~~l~--~l~~L~~L~l~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~ 240 (698)
.+.+..+..++ .+++|++|++++|.++. .|..+..+++|+.+++.++.+......... ...++|+.|++
T Consensus 156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L------ 229 (680)
T 1ziw_A 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL------ 229 (680)
T ss_dssp CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC------
T ss_pred cccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc------
Confidence 88765555443 45789999999988887 456678888888888888765432111000 01244455544
Q ss_pred ceeeeecCCCccCCcceeEEEeccccCCccCCccccCCCC--ccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccc
Q 047203 241 ISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTE--LTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSG 318 (698)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 318 (698)
++|.+....+.++..++. |+.|++++|.+....+..+... ++|++|++++|.+.+
T Consensus 230 ----------------------~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 230 ----------------------SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL-PQLEYFFLEYNNIQH 286 (680)
T ss_dssp ----------------------TTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSCCBSE
T ss_pred ----------------------cCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCc-ccccEeeCCCCccCc
Confidence 444444444444444432 5555555555444433333322 455555555555544
Q ss_pred cCCCCc-CCCCCCeEECCCCCCcC------------CCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcC
Q 047203 319 RIPNSL-GFRFPGTVDLSSNSFEG------------PLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSL 385 (698)
Q Consensus 319 ~~~~~~-~~~~l~~l~l~~~~~~~------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 385 (698)
..+..+ ..+.++.++++++.... ..-..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~ 365 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF-TGLINLKYLSLSNSFT 365 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT-TTCTTCCEEECTTCBS
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh-ccccCCcEEECCCCch
Confidence 443322 23445555554432221 011235678888888888875444433 4588888888888764
Q ss_pred CC--CCCccccC--ccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccC-ccccccCCCcEEEccCCeeeee
Q 047203 386 NG--SVPKSIGN--LQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIP-DSIGCLLSVRFLILCNNHISGE 460 (698)
Q Consensus 386 ~~--~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~ 460 (698)
.. .....+.. .++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+...
T Consensus 366 ~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 445 (680)
T 1ziw_A 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445 (680)
T ss_dssp CCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC
T ss_pred hhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee
Confidence 32 11222222 2578888888888887777788888888888888888875443 5677788888888888888777
Q ss_pred CCCCCCCCCCCCEEEcCCCcCc--ccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCccc
Q 047203 461 VPPSLKNCSMMDSLDLGDNQLS--GNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCV 538 (698)
Q Consensus 461 ~~~~l~~~~~L~~L~L~~n~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 538 (698)
.+..|..+++|++|++++|.+. +.+|..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 446 ~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 524 (680)
T 1ziw_A 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN 524 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTS
T ss_pred ChhhhhcCcccccchhccccccccccCCcccc-cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhc
Confidence 7778888888888888888765 34444433 48888888888888886666678888888888888888765422211
Q ss_pred ccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccc
Q 047203 539 GNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQI 618 (698)
Q Consensus 539 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 618 (698)
.. .....+..+++|++|++++|.++...+..|.++++|++|++++|+++...+..|
T Consensus 525 ~~------------------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 580 (680)
T 1ziw_A 525 PG------------------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVF 580 (680)
T ss_dssp TT------------------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cC------------------------CcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHh
Confidence 10 011124556777999999999996666679999999999999999997767778
Q ss_pred cCCCCCCeEeccCCcccccCCcCcc-CCCCCCeEecccceeeecCCC
Q 047203 619 GKLEWLESLDLSKNKLSGSIPPSMV-SLTFMNHLNLSYNNLSGEIPK 664 (698)
Q Consensus 619 ~~l~sL~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~ 664 (698)
..+++|++|++++|.+....|+.+. .+++|+.|++++||+....+.
T Consensus 581 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 8999999999999999987777777 789999999999999998886
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.7e-53 Score=465.11 Aligned_cols=540 Identities=21% Similarity=0.192 Sum_probs=420.2
Q ss_pred eEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCC
Q 047203 6 VELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG 85 (698)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 85 (698)
+.++.++.++..+|...+ +++++|++++|.+++..|.+|.++++|++|++++|.+.+..|++|+++++|++|++++
T Consensus 15 ~~~~c~~~~l~~iP~~l~----~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTLP----NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TEEECTTSCCSSCCTTSC----TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCcccCcCCCC----CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 567888888988887544 5799999999999988899999999999999999999998999999999999999999
Q ss_pred CCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCc
Q 047203 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDN 165 (698)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 165 (698)
|. .....+..|+++++|++|++++|.++...+..+..++ +|++|++++|.+.+.....+..+++|++|++++|
T Consensus 91 n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 91 NP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK------TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp CC-CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT------TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred Cc-ccccChhhhcccccccEeeccccCcccCCcchhccCC------cccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence 98 4456678899999999999999999987666665555 8999999999998765555666999999999999
Q ss_pred eeeecCCCCCcCcccCC--eeeccCcccCccccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecc--cccccc
Q 047203 166 SFVGSIPPSIGNLTFLK--ELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY--KLSENI 241 (698)
Q Consensus 166 ~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~--~~~~~~ 241 (698)
.+.+..+..++.+++|+ +|++++|.++.++........|+.|++++|... ...+..+..+....+. .....
T Consensus 164 ~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~l~~l~~~~~~~~- 238 (606)
T 3t6q_A 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL----LVIFKGLKNSTIQSLWLGTFEDM- 238 (606)
T ss_dssp CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCH----HHHHHHTTTCEEEEEECCCCTTS-
T ss_pred cccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhH----HHHhhhccccchhheechhhccc-
Confidence 99877788889999999 899999999997666666688999999988621 1234444443322221 11100
Q ss_pred eeeeecCCCccCCcceeEEEeccccCCccCCccccCCC--CccEEEccCCcCcCCCCchhhhhccCCcEEEecccccccc
Q 047203 242 SLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQT--ELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGR 319 (698)
Q Consensus 242 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 319 (698)
......+..+..+. +++.+++++|.+.+..+..+... +
T Consensus 239 ------------------------~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l-~--------------- 278 (606)
T 3t6q_A 239 ------------------------DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF-S--------------- 278 (606)
T ss_dssp ------------------------CCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTC-T---------------
T ss_pred ------------------------cccccChhHhchhhcCceeEEEeecCccCccCHHHhccc-c---------------
Confidence 00011111222221 45556666655554443333221 2
Q ss_pred CCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCC
Q 047203 320 IPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQL 399 (698)
Q Consensus 320 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L 399 (698)
+|+.|++++|.+. .+|..+ ..+++|++|++++|.+....+..+..+++|
T Consensus 279 -----------------------------~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 327 (606)
T 3t6q_A 279 -----------------------------GLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSL 327 (606)
T ss_dssp -----------------------------TCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGGCTTC
T ss_pred -----------------------------CCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhccCcC
Confidence 3333333333333 333333 347788888888888876666677788888
Q ss_pred cEEEeeCCccccCc-CccCCCCCCccEEEcccCcccccc--CccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEc
Q 047203 400 LTLVISNNNLSGEI-PQLWSNISSLYILDMSNNTLSGEI--PDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDL 476 (698)
Q Consensus 400 ~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 476 (698)
+.|++++|.+.+.. +..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 407 (606)
T 3t6q_A 328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407 (606)
T ss_dssp SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEEC
T ss_pred CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEEC
Confidence 88888888776444 345888889999999999887655 667888899999999999988888888999999999999
Q ss_pred CCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCC---CcccccccCCCcCCCCCcc
Q 047203 477 GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFI---PSCVGNFSRMKIEPPDSVE 553 (698)
Q Consensus 477 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~~~~~~~~ 553 (698)
++|++.+..+...+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+.. +..+..
T Consensus 408 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~------------- 474 (606)
T 3t6q_A 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT------------- 474 (606)
T ss_dssp TTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG-------------
T ss_pred CCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc-------------
Confidence 9999886666655666899999999999998888888999999999999999887531 233443
Q ss_pred cccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCc
Q 047203 554 YEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNK 633 (698)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~ 633 (698)
+++|++|++++|.+++..|..+.++++|++|++++|++++..|+.+..+++| +|++++|.
T Consensus 475 -------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 475 -------------------LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp -------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred -------------------CCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 4555899999999998889999999999999999999999999999999999 99999999
Q ss_pred ccccCCcCccCCCCCCeEecccceeeecCCCC
Q 047203 634 LSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV 665 (698)
Q Consensus 634 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 665 (698)
+.+..|+.+..+++|+.|++++|++....|..
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred ccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 99888888999999999999999999877743
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.4e-52 Score=468.22 Aligned_cols=584 Identities=25% Similarity=0.229 Sum_probs=404.0
Q ss_pred CcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEEeCc
Q 047203 30 LQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLS 109 (698)
Q Consensus 30 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (698)
-+.++++++.++. +|..+. +++++|++++|.+.+..+.+|.++++|++|++++|. .....+..|.++++|++|+++
T Consensus 6 ~~~~~cs~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~ 81 (680)
T 1ziw_A 6 HEVADCSHLKLTQ-VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQ 81 (680)
T ss_dssp SSEEECCSSCCSS-CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECC
T ss_pred CCeeECCCCCccc-cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECC
Confidence 3678999999874 676554 799999999999998888889999999999999998 455667889999999999999
Q ss_pred CccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeeccCc
Q 047203 110 RNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSN 189 (698)
Q Consensus 110 ~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 189 (698)
+|.++......|..+. +|++|++++|.+++..+..|+++++|++|++++|.+.+..+..++++++|++|++++|
T Consensus 82 ~n~l~~l~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 82 HNELSQLSDKTFAFCT------NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp SSCCCCCCTTTTTTCT------TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred CCccCccChhhhccCC------CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 9999877766676665 7999999999998888888999999999999999998888888899999999999999
Q ss_pred ccCcccc-c--cCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEecccc
Q 047203 190 QMNGFPE-S--FGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQ 266 (698)
Q Consensus 190 ~~~~~~~-~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 266 (698)
.++.++. . ...+++|+.|++++|.+.+..+. .+..+++|+.+.+.. +.
T Consensus 156 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~----------------------------~~ 206 (680)
T 1ziw_A 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPG-CFHAIGRLFGLFLNN----------------------------VQ 206 (680)
T ss_dssp CCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT-GGGGSSEECEEECTT----------------------------CC
T ss_pred cccccCHHHhhccccccccEEECCCCcccccChh-hhhhhhhhhhhhccc----------------------------cc
Confidence 9888543 3 33568899999999987654433 566666666666544 22
Q ss_pred CCccCCccc---cCCCCccEEEccCCcCcCCCCchhhhhc-cCCcEEEeccccccccCCCCc-CCCCCCeEECCCCCCcC
Q 047203 267 LGPKFPTWL---RNQTELTTLVLNNARISDTVPNWFWQLD-LALDELDVGSNELSGRIPNSL-GFRFPGTVDLSSNSFEG 341 (698)
Q Consensus 267 ~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~~-~~~~l~~l~l~~~~~~~ 341 (698)
+.......+ ...++|+.|++++|.+.+..+..+.... ++|++|++++|.+.+..+..+ ..+.|+.+++++|.+.+
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSE
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCc
Confidence 211111111 1347888999999888877776666543 358888888888877665544 35666666666666655
Q ss_pred CCCCc---ccCccEEEcccCccccc--------CCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccc
Q 047203 342 PLPLW---SFNVTKLYLNNNSFSGP--------IPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLS 410 (698)
Q Consensus 342 ~~~~~---~~~L~~L~l~~~~~~~~--------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 410 (698)
..+.. +++|+.|+++++...+. +....+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 287 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp ECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred cChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence 43322 34566666655433211 11112234556666666666665555555555666666666655432
Q ss_pred c--CcCccCCC--CCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCC-CCCCCCCCCCEEEcCCCcCcccC
Q 047203 411 G--EIPQLWSN--ISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVP-PSLKNCSMMDSLDLGDNQLSGNI 485 (698)
Q Consensus 411 ~--~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~n~~~~~~ 485 (698)
. .....|.. .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++. .+
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~ 445 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL-QL 445 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE-EC
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc-ee
Confidence 1 11122222 1356666666666655555555556666666666666554333 34555666666666666555 23
Q ss_pred chhhhhcCCCCcEEEccCCccc--ccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeec
Q 047203 486 PAWIGESMPSLSILRLRSNYFN--GTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLK 563 (698)
Q Consensus 486 ~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~ 563 (698)
+...+..+++|+.|++++|.+. +..|..+..+++|++|++++|.+.+..+..+.+
T Consensus 446 ~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~----------------------- 502 (680)
T 1ziw_A 446 TRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG----------------------- 502 (680)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------
T ss_pred ChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc-----------------------
Confidence 3333333566666666665553 334555556666666666666655544444444
Q ss_pred ccceeeeccccccCeEEcCCCcCCccCC--------hhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 047203 564 GTQYVFYSTLYLVNLMDLSSNNLSGEMP--------VELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 635 (698)
Q Consensus 564 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~--------~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~ 635 (698)
+++|++|++++|.+++..+ ..+.++++|++|++++|+++...++.|.++++|++|++++|.+.
T Consensus 503 ---------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 573 (680)
T 1ziw_A 503 ---------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN 573 (680)
T ss_dssp ---------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ---------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC
Confidence 4455899999999986422 23788999999999999999555567999999999999999999
Q ss_pred ccCCcCccCCCCCCeEecccceeeecCCCCC--ccccCCCCccccCCCCCcCC
Q 047203 636 GSIPPSMVSLTFMNHLNLSYNNLSGEIPKVN--QFQSLKDPSIYEGNLALCGD 686 (698)
Q Consensus 636 ~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~ 686 (698)
...+..|..+++|+.|++++|++.+..|... .+.+++.+. ..+|++.|.-
T Consensus 574 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~-l~~N~~~c~c 625 (680)
T 1ziw_A 574 TLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD-MRFNPFDCTC 625 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEE-CTTCCCCBCC
T ss_pred cCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEE-ccCCCcccCC
Confidence 7777788999999999999999987666542 567888887 6666666653
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.7e-51 Score=451.60 Aligned_cols=546 Identities=22% Similarity=0.165 Sum_probs=431.9
Q ss_pred eEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCC
Q 047203 6 VELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG 85 (698)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 85 (698)
+.+++++.+++.+|...+ +++++|++++|.+++..+.+|.++++|++|++++|.+.+..|.+|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP----SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCSSCCTTSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEccCCCcccCCCCCC----CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 578899999999997544 8899999999999988888999999999999999999988899999999999999999
Q ss_pred CCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccc-cCCccccCCCCCcEEEccC
Q 047203 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTG-DLPNSLGYLKNLRYLELWD 164 (698)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~ 164 (698)
|. .....+..|+++++|++|++++|.++...+..+..+. +|++|++++|.+.+ ..|..++++++|++|++++
T Consensus 90 n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 90 NP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLI------TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp CC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCT------TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred Cc-ccccChhhcCCcccCCEEEccCCccccccccccCCCC------CCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 99 4555688899999999999999999887766666655 89999999999986 4689999999999999999
Q ss_pred ceeeecCCCCCcCcccCC----eeeccCcccCccccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEeccccccc
Q 047203 165 NSFVGSIPPSIGNLTFLK----ELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSEN 240 (698)
Q Consensus 165 ~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 240 (698)
|.+.+..+..++.+.+|+ +|++++|.++.++.......+|+.|++++|.+.+......+..++.++.+.+......
T Consensus 163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp SCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred CcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 999988888888887776 8999999999987766666699999999998875555667888888888776431110
Q ss_pred ceeeeecCCCccCCcceeEEEeccccCCccCCccccCCC--CccEEEc-cCCcCcCCCCchhhhhccCCcEEEecccccc
Q 047203 241 ISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQT--ELTTLVL-NNARISDTVPNWFWQLDLALDELDVGSNELS 317 (698)
Q Consensus 241 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 317 (698)
.. . .+....+.++..+. .++.+++ ..+.+.+..+. + ..
T Consensus 243 ~~------------~----------~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~-~~--------------- 283 (606)
T 3vq2_A 243 DE------------R----------NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-F-HC--------------- 283 (606)
T ss_dssp TS------------C----------CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-C-GG---------------
T ss_pred cC------------C----------cccccChHHhhhhhhccHhheeccccccccccccc-c-cc---------------
Confidence 00 0 00001111111111 2333444 22233322222 1 11
Q ss_pred ccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCcc
Q 047203 318 GRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQ 397 (698)
Q Consensus 318 ~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 397 (698)
+++++.|+++++.+. .++ ....+++|++|++++|.+. .++ .+ .++
T Consensus 284 -----------------------------l~~L~~L~l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~ 328 (606)
T 3vq2_A 284 -----------------------------LANVSAMSLAGVSIK-YLE--DVPKHFKWQSLSIIRCQLK-QFP-TL-DLP 328 (606)
T ss_dssp -----------------------------GTTCSEEEEESCCCC-CCC--CCCTTCCCSEEEEESCCCS-SCC-CC-CCS
T ss_pred -----------------------------CCCCCEEEecCccch-hhh--hccccccCCEEEcccccCc-ccc-cC-CCC
Confidence 224444444444443 233 2234778888888888884 444 44 788
Q ss_pred CCcEEEeeCCccccCcCccCCCCCCccEEEcccCcccccc--CccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEE
Q 047203 398 QLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEI--PDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLD 475 (698)
Q Consensus 398 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 475 (698)
+|+.|++++|...+.. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+ .+..+..+++|++|+
T Consensus 329 ~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~ 405 (606)
T 3vq2_A 329 FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLD 405 (606)
T ss_dssp SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEE
T ss_pred ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeE
Confidence 8999999988544322 5678899999999999887653 6778889999999999999874 567889999999999
Q ss_pred cCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCcc-CCCcccccccCCCcCCCCCccc
Q 047203 476 LGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSG-FIPSCVGNFSRMKIEPPDSVEY 554 (698)
Q Consensus 476 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~~~~~~~~~ 554 (698)
+++|++.+..+...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|
T Consensus 406 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L---------- 475 (606)
T 3vq2_A 406 FQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL---------- 475 (606)
T ss_dssp CTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC----------
T ss_pred CCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC----------
Confidence 999999866664555669999999999999998888899999999999999999987 367667666666
Q ss_pred ccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcc
Q 047203 555 EGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKL 634 (698)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~ 634 (698)
++|++++|.+++..|..+.++++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus 476 ----------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 476 ----------------------TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ----------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred ----------------------CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 8999999999999999999999999999999999988899999999999999999999
Q ss_pred cccCCcCccCCC-CCCeEecccceeeecCCCCCccccCC
Q 047203 635 SGSIPPSMVSLT-FMNHLNLSYNNLSGEIPKVNQFQSLK 672 (698)
Q Consensus 635 ~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~~~~~~~~ 672 (698)
. .+|..+..++ +|+.|++++|++....|..+...-++
T Consensus 534 ~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 534 E-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp C-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTT
T ss_pred c-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHH
Confidence 8 6777798887 69999999999999888755444443
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.1e-49 Score=440.60 Aligned_cols=541 Identities=23% Similarity=0.225 Sum_probs=417.0
Q ss_pred CcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEEeCc
Q 047203 30 LQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLS 109 (698)
Q Consensus 30 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (698)
-+.++.++..++ .+|..+.. ++++|++++|.+.+..|.+|.++++|++|++++|. .....+..|.++++|++|+++
T Consensus 14 ~~~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCC
Confidence 457888888887 46776654 79999999999998889999999999999999998 445667889999999999999
Q ss_pred CccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeeccCc
Q 047203 110 RNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSN 189 (698)
Q Consensus 110 ~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 189 (698)
+|++....+..|..++ +|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 90 ~n~l~~~~~~~~~~l~------~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 163 (606)
T 3t6q_A 90 ANPLIFMAETALSGPK------ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163 (606)
T ss_dssp TCCCSEECTTTTSSCT------TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSS
T ss_pred CCcccccChhhhcccc------cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccC
Confidence 9998877777776665 7899999999888777778888889999999988887644344555888888888888
Q ss_pred ccCcc-ccccCCCCCCc--EEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEecccc
Q 047203 190 QMNGF-PESFGQLSAIE--VLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQ 266 (698)
Q Consensus 190 ~~~~~-~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 266 (698)
.++.+ +..+..+++|+ .|++++|.+.+..+. .+. ...++.+++.+|.
T Consensus 164 ~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~-~~~-----------------------------~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG-AFD-----------------------------SAVFQSLNFGGTQ 213 (606)
T ss_dssp CCCEECHHHHHTTTTCCSEEEECTTCCCCEECTT-TTT-----------------------------TCEEEEEECTTCS
T ss_pred cccccChhhhhhhcccceeEEecCCCccCccChh-Hhh-----------------------------hccccccccCCch
Confidence 88874 56677888888 788888877654433 221 1234444444433
Q ss_pred CCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCCCCCc
Q 047203 267 LGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLW 346 (698)
Q Consensus 267 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 346 (698)
..+.++..+.+++...+......+.. .. .+....+.+. .
T Consensus 214 ---~~~~~~~~l~~~~l~~l~~~~~~~~~------------~~-----------------------~i~~~~~~~l---~ 252 (606)
T 3t6q_A 214 ---NLLVIFKGLKNSTIQSLWLGTFEDMD------------DE-----------------------DISPAVFEGL---C 252 (606)
T ss_dssp ---CHHHHHHHTTTCEEEEEECCCCTTSC------------CC-----------------------CCCGGGGGGG---G
T ss_pred ---hHHHHhhhccccchhheechhhcccc------------cc-----------------------ccChhHhchh---h
Confidence 22233333333322222221111000 00 0000000000 0
Q ss_pred ccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEE
Q 047203 347 SFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYIL 426 (698)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 426 (698)
..+++.+++++|.+.+ ++...+..+++|++|++++|.+. .++..+..+++|+.|++++|.+.+..+..+..+++|++|
T Consensus 253 ~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 253 EMSVESINLQKHYFFN-ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GSEEEEEECTTCCCSS-CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred cCceeEEEeecCccCc-cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 1267788888888874 44444456999999999999998 566678889999999999999997778889999999999
Q ss_pred EcccCcccccc-CccccccCCCcEEEccCCeeeeeC--CCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccC
Q 047203 427 DMSNNTLSGEI-PDSIGCLLSVRFLILCNNHISGEV--PPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRS 503 (698)
Q Consensus 427 ~L~~n~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~ 503 (698)
++++|.+.... +..+..+++|++|++++|.+.+.. +..+..+++|++|++++|++.+..+.. +..+++|+.|++++
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA-FKECPQLELLDLAF 409 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT-TTTCTTCSEEECTT
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH-hcCCccCCeEECCC
Confidence 99999887444 445888999999999999998665 778999999999999999998555544 44599999999999
Q ss_pred CcccccCCh-hhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcC
Q 047203 504 NYFNGTIPP-ELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLS 582 (698)
Q Consensus 504 ~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 582 (698)
|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++| ++|+++
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------~~L~L~ 457 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL--------------------------------QHLNLQ 457 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC--------------------------------CEEECT
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC--------------------------------CEEECC
Confidence 999866554 48999999999999999998888777776666 899999
Q ss_pred CCcCCcc---CChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceee
Q 047203 583 SNNLSGE---MPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 659 (698)
Q Consensus 583 ~n~~~~~---~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 659 (698)
+|.+++. .+..+..+++|++|++++|++++..|..|..+++|++|++++|.+....|+.+.++++| .|++++|+++
T Consensus 458 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp TCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred CCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 9999862 34678999999999999999998889999999999999999999999999999999999 9999999999
Q ss_pred ecCCCC-CccccCCCCccccCCCCCcCCCCCCCCcc
Q 047203 660 GEIPKV-NQFQSLKDPSIYEGNLALCGDPLPERCSE 694 (698)
Q Consensus 660 ~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (698)
+..|.. +.+.+++.+. ..+ ||+.+.|+.
T Consensus 537 ~~~~~~~~~l~~L~~L~-l~~------N~~~c~c~~ 565 (606)
T 3t6q_A 537 IILPSLLPILSQQRTIN-LRQ------NPLDCTCSN 565 (606)
T ss_dssp CCCGGGHHHHHTSSEEE-CTT------CCEECSGGG
T ss_pred ccCHhhcccCCCCCEEe-CCC------CCccccCCc
Confidence 777764 5677787777 444 556666653
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-48 Score=430.96 Aligned_cols=535 Identities=21% Similarity=0.195 Sum_probs=403.2
Q ss_pred CCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEEeC
Q 047203 29 SLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKL 108 (698)
Q Consensus 29 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 108 (698)
.-++++.+++.++ .+|..+. ++|++|++++|.+.+..+.+|+++++|++|++++|. .....+..|.++++|++|++
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEEC
T ss_pred CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeEC
Confidence 3467899999887 4566554 789999999999998888889999999999999998 44455677889999999999
Q ss_pred cCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeee-cCCCCCcCcccCCeeecc
Q 047203 109 SRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVG-SIPPSIGNLTFLKELYLS 187 (698)
Q Consensus 109 ~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~ 187 (698)
++|.++...+..|..+. +|++|++++|.++...+..++++++|++|++++|.+.+ .+|..++++++|++|+++
T Consensus 88 s~n~l~~~~p~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLT------SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp TTCCCCCCCTTSSTTCT------TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred CCCcccccChhhcCCcc------cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 99888877666666555 67788888877776666777777778888877777764 356777777777777777
Q ss_pred CcccCcc-ccccCCCCCC----cEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEe
Q 047203 188 SNQMNGF-PESFGQLSAI----EVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKI 262 (698)
Q Consensus 188 ~~~~~~~-~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 262 (698)
+|.++.+ +..+..+++| +.+++++|.+...... . +...+++.+++
T Consensus 162 ~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~-~-----------------------------~~~~~L~~L~L 211 (606)
T 3vq2_A 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQ-A-----------------------------FQGIKLHELTL 211 (606)
T ss_dssp SSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTT-T-----------------------------TTTCEEEEEEE
T ss_pred CCcceecChhhhhhhhccccccceeeccCCCcceeCcc-c-----------------------------ccCceeeeeec
Confidence 7777764 3445444443 3677777765533221 1 12224566666
Q ss_pred ccccCC-ccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcC
Q 047203 263 RSCQLG-PKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEG 341 (698)
Q Consensus 263 ~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~ 341 (698)
++|.+. ...+.++..++.++.+.+....+..... +..+ ....+.+
T Consensus 212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---------l~~~-------------------------~~~~~~~ 257 (606)
T 3vq2_A 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN---------LEIF-------------------------EPSIMEG 257 (606)
T ss_dssp ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC---------CSCC-------------------------CGGGGTT
T ss_pred cCCccchhHHHHHhccccccccccccccccccCCc---------cccc-------------------------ChHHhhh
Confidence 666554 3455666777777766665443321110 0000 0000000
Q ss_pred CCCCcccCccEEEc-ccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCC
Q 047203 342 PLPLWSFNVTKLYL-NNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNI 420 (698)
Q Consensus 342 ~~~~~~~~L~~L~l-~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 420 (698)
.....++.+++ ..+.+.+..+. +..+++|+.|+++++.+... + .+..+++|+.|++++|.+. .+| .+ .+
T Consensus 258 ---l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l-~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l 327 (606)
T 3vq2_A 258 ---LCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYL-E-DVPKHFKWQSLSIIRCQLK-QFP-TL-DL 327 (606)
T ss_dssp ---GGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCC-C-CCCTTCCCSEEEEESCCCS-SCC-CC-CC
T ss_pred ---hhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhh-h-hccccccCCEEEcccccCc-ccc-cC-CC
Confidence 00114566666 55556655555 45699999999999999753 3 7888999999999999994 666 45 89
Q ss_pred CCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeC--CCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcE
Q 047203 421 SSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEV--PPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSI 498 (698)
Q Consensus 421 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 498 (698)
++|++|++++|...... .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+. .++..+ ..+++|+.
T Consensus 328 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~-~~l~~L~~ 403 (606)
T 3vq2_A 328 PFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANF-MGLEELQH 403 (606)
T ss_dssp SSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCC-TTCTTCCE
T ss_pred CccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhc-cCCCCCCe
Confidence 99999999999655433 5678999999999999998653 677889999999999999988 566444 44999999
Q ss_pred EEccCCcccccCC-hhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccC
Q 047203 499 LRLRSNYFNGTIP-PELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVN 577 (698)
Q Consensus 499 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 577 (698)
|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++| +
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------~ 451 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL--------------------------------N 451 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC--------------------------------C
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCC--------------------------------C
Confidence 9999999987776 688999999999999999998888887777666 8
Q ss_pred eEEcCCCcCCc-cCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccc
Q 047203 578 LMDLSSNNLSG-EMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 656 (698)
Q Consensus 578 ~l~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 656 (698)
+|++++|.+++ ..|..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..|+.+..+++|++|+|++|
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence 89999999987 47888999999999999999999988999999999999999999999888999999999999999999
Q ss_pred eeeecCCCC-Ccc-ccCCCCccccCCCCCcC
Q 047203 657 NLSGEIPKV-NQF-QSLKDPSIYEGNLALCG 685 (698)
Q Consensus 657 ~~~~~~p~~-~~~-~~~~~~~~~~~~~~~~~ 685 (698)
++. .+|.. +.. .+++.+. ..+|++.|.
T Consensus 532 ~l~-~~p~~~~~l~~~L~~l~-l~~N~~~c~ 560 (606)
T 3vq2_A 532 RIE-TSKGILQHFPKSLAFFN-LTNNSVACI 560 (606)
T ss_dssp CCC-CEESCGGGSCTTCCEEE-CCSCCCCCS
T ss_pred cCc-ccCHhHhhhcccCcEEE-ccCCCcccC
Confidence 988 67665 333 3577666 555554443
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-47 Score=436.05 Aligned_cols=543 Identities=21% Similarity=0.227 Sum_probs=405.8
Q ss_pred eEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccc-cCCccccCCCCCcEEECC
Q 047203 6 VELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQG-DIPDGFSSLNSLQQLDLT 84 (698)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~ 84 (698)
+..+.++++++.+|. . .+++++|+|++|.+++..+..|.++++|++|++++|.... +.|.+|.++++|++|+++
T Consensus 7 ~~~dcs~~~L~~vP~-l----p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-V----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS-S----CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC-C----CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 467888899998886 3 3789999999999998889999999999999999995544 448899999999999999
Q ss_pred CCCCCCcccchhccCCCCCCEEeCcCccCCCccch--hhccccccccCCCCcEEEccCCcccccCC-ccccCCCCCcEEE
Q 047203 85 GNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSD--FINGLSECTNSSLLEKLELGFNQLTGDLP-NSLGYLKNLRYLE 161 (698)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~ 161 (698)
+|. .....+..|.++++|++|++++|.+.+..+. .+..++ +|++|++++|.+++..+ ..|+++++|++|+
T Consensus 82 ~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~------~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 82 SSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK------ALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp TCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS------SCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred CCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC------CCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 999 4456688999999999999999998864332 254444 89999999999987654 5799999999999
Q ss_pred ccCceeeecCCCCCcCc--ccCCeeeccCcccCc-cccccCCCCC------CcEEEccCCeeeeecCchhhcC--CCCcc
Q 047203 162 LWDNSFVGSIPPSIGNL--TFLKELYLSSNQMNG-FPESFGQLSA------IEVLDLDENQWEGIITETHFRN--LSNLK 230 (698)
Q Consensus 162 l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~l~~l~~------L~~L~l~~~~~~~~~~~~~~~~--l~~L~ 230 (698)
+++|.+.+..+..++.+ ++|+.|++++|.+.. .|..+..+++ |+.|++++|.+....+...... ..++.
T Consensus 155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred CCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 99999988888888877 899999999999877 5666655554 9999999987765444322211 12333
Q ss_pred EEecccccccceeeeecCCCccCCcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCchhhhh-ccCCcEE
Q 047203 231 EISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQL-DLALDEL 309 (698)
Q Consensus 231 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L 309 (698)
.+.+. .+...... ..+.+.+.....+... .++++.|
T Consensus 235 ~L~l~----------------------------~~~~~~~~---------------~~~~l~~~~~~~f~~l~~~~L~~L 271 (844)
T 3j0a_A 235 SLILA----------------------------HHIMGAGF---------------GFHNIKDPDQNTFAGLARSSVRHL 271 (844)
T ss_dssp EEECC----------------------------SSCCBCSS---------------SCSSSTTGGGTTTTTTTTSCCCEE
T ss_pred ceecc----------------------------cccccccc---------------cccccCCCChhhhhccccCCccEE
Confidence 33332 11111000 0011111111111111 1455566
Q ss_pred EeccccccccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCC
Q 047203 310 DVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSV 389 (698)
Q Consensus 310 ~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~ 389 (698)
++++|.+.+..+..+. .+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+....
T Consensus 272 ~Ls~n~l~~~~~~~~~--------------------~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~ 330 (844)
T 3j0a_A 272 DLSHGFVFSLNSRVFE--------------------TLKDLKVLNLAYNKINKIADEAF-YGLDNLQVLNLSYNLLGELY 330 (844)
T ss_dssp ECTTCCCCEECSCCSS--------------------SCCCCCEEEEESCCCCEECTTTT-TTCSSCCEEEEESCCCSCCC
T ss_pred ECCCCcccccChhhhh--------------------cCCCCCEEECCCCcCCCCChHHh-cCCCCCCEEECCCCCCCccC
Confidence 6655555443332221 13466777777777765544444 45889999999999998777
Q ss_pred CccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCC
Q 047203 390 PKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCS 469 (698)
Q Consensus 390 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 469 (698)
+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+.. +..+++|+.|++++|.+. ..|.. ..
T Consensus 331 ~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~~---~~ 401 (844)
T 3j0a_A 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKI---NL 401 (844)
T ss_dssp SCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCCC---CT
T ss_pred HHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-ccccc---cc
Confidence 8888899999999999999887777788999999999999998874 234789999999999987 44432 46
Q ss_pred CCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCCh-hhccCCCCCEEECCCCcCccCCCcccccccCCCcCC
Q 047203 470 MMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP-ELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEP 548 (698)
Q Consensus 470 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~ 548 (698)
+++.|++++|++.+.-.......+++|+.|++++|.+.+..+. .+..+++|++|++++|.+....+...
T Consensus 402 ~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~---------- 471 (844)
T 3j0a_A 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL---------- 471 (844)
T ss_dssp TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCC----------
T ss_pred ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccccccc----------
Confidence 7899999999988433333444599999999999998754333 45678999999999998874332111
Q ss_pred CCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEe
Q 047203 549 PDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLD 628 (698)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~ 628 (698)
....+..+++|+.|++++|.+++..+..+.++++|++|+|++|++++..+..+. ++|+.|+
T Consensus 472 -----------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~ 532 (844)
T 3j0a_A 472 -----------------CWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILD 532 (844)
T ss_dssp -----------------CSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEE
T ss_pred -----------------chhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEE
Confidence 011234456668999999999999999999999999999999999976666665 8999999
Q ss_pred ccCCcccccCCcCccCCCCCCeEecccceeeecCCCC
Q 047203 629 LSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV 665 (698)
Q Consensus 629 l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 665 (698)
+++|.+.+..|+.+ ++|+.|++++||+....+..
T Consensus 533 Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 533 ISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS 566 (844)
T ss_dssp EEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred CCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence 99999998888775 48999999999999877644
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-46 Score=413.01 Aligned_cols=522 Identities=22% Similarity=0.221 Sum_probs=362.8
Q ss_pred ceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECC
Q 047203 5 LVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLT 84 (698)
Q Consensus 5 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 84 (698)
.+.++.++.++..+|...+ +++++|++++|.+++..+.+|..+++|++|++++|.+.+..|.+|+++++|++|+++
T Consensus 9 ~~~~~c~~~~l~~ip~~l~----~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TTEEECCSSCCSSCCSSSC----SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEeCCCCccccCCCcc----ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 3467778888888887443 679999999999998888899999999999999999998888999999999999999
Q ss_pred CCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCccccc-CCccccCCCCCcEEEcc
Q 047203 85 GNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGD-LPNSLGYLKNLRYLELW 163 (698)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~ 163 (698)
+|. .....+..|.++++|++|++++|.++......+..+. +|++|++++|.++.. .|..++++++|++|+++
T Consensus 85 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~------~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 85 GNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp TCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCT------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred CCc-CCccCHhhhcCccccccccccccccccCCCccccccc------cccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 998 4445567899999999999999998876655555444 799999999988863 58889999999999999
Q ss_pred CceeeecCCCCCcCcccC----CeeeccCcccCccccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccc
Q 047203 164 DNSFVGSIPPSIGNLTFL----KELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSE 239 (698)
Q Consensus 164 ~~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 239 (698)
+|.+....+..++.+++| ++|++++|.++.++.......+|+.|++++|..........+..++.++...+..
T Consensus 158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~--- 234 (570)
T 2z63_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL--- 234 (570)
T ss_dssp TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE---
T ss_pred CCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeecc---
Confidence 999887777778888888 7889999988885443333347888888887533222223344555554443321
Q ss_pred cceeeeecCCCccCCcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEecccccccc
Q 047203 240 NISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGR 319 (698)
Q Consensus 240 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 319 (698)
.. +.....++.+ .. ..+... +.+
T Consensus 235 -----------------------~~----------~~~~~~l~~~--~~--------~~~~~l-~~l------------- 257 (570)
T 2z63_A 235 -----------------------GE----------FRNEGNLEKF--DK--------SALEGL-CNL------------- 257 (570)
T ss_dssp -----------------------EE----------CCCCSSCEEC--CT--------TTTGGG-GGS-------------
T ss_pred -----------------------cc----------ccCchhhhhc--ch--------hhhccc-ccc-------------
Confidence 00 0000000000 00 000000 000
Q ss_pred CCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccC-cccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccC
Q 047203 320 IPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNN-SFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQ 398 (698)
Q Consensus 320 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 398 (698)
.++.+++.++ .+.+..+..+ ..+++|++|++++|.+.. ++..+..+ +
T Consensus 258 -----------------------------~l~~l~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~l~~-l~~~~~~~-~ 305 (570)
T 2z63_A 258 -----------------------------TIEEFRLAYLDYYLDDIIDLF-NCLTNVSSFSLVSVTIER-VKDFSYNF-G 305 (570)
T ss_dssp -----------------------------EEEEEEEEETTEEESCSTTTT-GGGTTCSEEEEESCEECS-CCBCCSCC-C
T ss_pred -----------------------------chhhhhhhcchhhhhhchhhh-cCcCcccEEEecCccchh-hhhhhccC-C
Confidence 2233333333 2222222222 235666666666665552 33444445 6
Q ss_pred CcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeC--CCCCCCCCCCCEEEc
Q 047203 399 LLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEV--PPSLKNCSMMDSLDL 476 (698)
Q Consensus 399 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~L~L 476 (698)
|+.|++++|.+. ..|. ..+++|++|++++|.+....+. ..+++|++|++++|.+.+.. +..+..+++|++|++
T Consensus 306 L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l 380 (570)
T 2z63_A 306 WQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380 (570)
T ss_dssp CSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEEC
T ss_pred ccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEEC
Confidence 666666666665 2332 3456666666666665543332 45666777777766665332 445566677777777
Q ss_pred CCCcCcccCchhhhhcCCCCcEEEccCCcccccCC-hhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccc
Q 047203 477 GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP-PELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYE 555 (698)
Q Consensus 477 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~ 555 (698)
++|.+. .++.. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+.++++|
T Consensus 381 ~~n~l~-~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----------- 447 (570)
T 2z63_A 381 SFNGVI-TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL----------- 447 (570)
T ss_dssp CSCSEE-EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-----------
T ss_pred CCCccc-ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcC-----------
Confidence 777766 33333 3347777777777777765544 356777777888887777776666666555555
Q ss_pred cceEEeecccceeeeccccccCeEEcCCCcCC-ccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcc
Q 047203 556 GSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLS-GEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKL 634 (698)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~ 634 (698)
++|++++|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus 448 ---------------------~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 448 ---------------------EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp ---------------------CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ---------------------cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 77888888776 46778888999999999999999988899999999999999999999
Q ss_pred cccCCcCccCCCCCCeEecccceeeecCCCCCcc
Q 047203 635 SGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQF 668 (698)
Q Consensus 635 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~ 668 (698)
....|+.+..+++|+.|++++|++.+..|..+..
T Consensus 507 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 9888888999999999999999999999876554
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=421.49 Aligned_cols=541 Identities=22% Similarity=0.214 Sum_probs=399.7
Q ss_pred cEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEEeCcC
Q 047203 31 QVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSR 110 (698)
Q Consensus 31 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (698)
+..+.+++.++. +|. ..++|++|++++|.+.+..|..|.++++|++|++++|.......+..|.++++|++|++++
T Consensus 7 ~~~dcs~~~L~~-vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQ-VPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSC-CCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCC-CCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 467888888874 565 5689999999999999888999999999999999999644334477899999999999999
Q ss_pred ccCCCccchhhccccccccCCCCcEEEccCCcccccCCcc--ccCCCCCcEEEccCceeeecCC-CCCcCcccCCeeecc
Q 047203 111 NSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNS--LGYLKNLRYLELWDNSFVGSIP-PSIGNLTFLKELYLS 187 (698)
Q Consensus 111 ~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~ 187 (698)
|.+....+..|..+. +|++|++++|.+++..+.. +..+++|++|++++|.+.+..+ ..|+++++|++|+++
T Consensus 83 N~l~~~~p~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls 156 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLF------HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156 (844)
T ss_dssp CCCCEECTTSSCSCS------SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE
T ss_pred CcCcccCHhHccCCc------ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC
Confidence 998877777776665 6888888888877654443 7788888888888887765543 457778888888888
Q ss_pred CcccCc-cccccCCC--CCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEecc
Q 047203 188 SNQMNG-FPESFGQL--SAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRS 264 (698)
Q Consensus 188 ~~~~~~-~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 264 (698)
+|.++. .+..+..+ ++|+.|++++|.+....+. .+..+++
T Consensus 157 ~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~------------------------------------ 199 (844)
T 3j0a_A 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMN------------------------------------ 199 (844)
T ss_dssp SSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSC------------------------------------
T ss_pred CCcCCeeCHHHcccccCCccceEECCCCcccccccc-chhhcCC------------------------------------
Confidence 887766 45556555 6777777777765542221 1111100
Q ss_pred ccCCccCCccccCCCCccEEEccCCcCcCCCCchhhhh--ccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCC
Q 047203 265 CQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQL--DLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGP 342 (698)
Q Consensus 265 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~ 342 (698)
.+.. ..|+.|++++|.+....+..+... ...+..+.+..+...... ....+.. .....+.
T Consensus 200 ---------~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~----~~~~l~~--~~~~~f~-- 261 (844)
T 3j0a_A 200 ---------PFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF----GFHNIKD--PDQNTFA-- 261 (844)
T ss_dssp ---------TTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS----SCSSSTT--GGGTTTT--
T ss_pred ---------cccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc----cccccCC--CChhhhh--
Confidence 0111 135555555555554444433322 134555555433221100 0000000 0001111
Q ss_pred CCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCC
Q 047203 343 LPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISS 422 (698)
Q Consensus 343 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 422 (698)
....++++.|++++|.+.+..+..+ ..+++|+.|++++|.+....+..|..+++|+.|++++|.+.+..+..|..+++
T Consensus 262 -~l~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 262 -GLARSSVRHLDLSHGFVFSLNSRVF-ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp -TTTTSCCCEEECTTCCCCEECSCCS-SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred -ccccCCccEEECCCCcccccChhhh-hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 1113578999999998885555444 56999999999999998877888999999999999999998777889999999
Q ss_pred ccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEcc
Q 047203 423 LYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR 502 (698)
Q Consensus 423 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 502 (698)
|++|++++|.+....+..|..+++|++|++++|.+++ +..+++|+.|++++|++. .+|.. ..+++.|+++
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls 409 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLS 409 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCCC----CTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-ccccc----ccccceeecc
Confidence 9999999999988877888999999999999999863 334889999999999988 66654 6689999999
Q ss_pred CCcccccC-ChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEc
Q 047203 503 SNYFNGTI-PPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDL 581 (698)
Q Consensus 503 ~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l 581 (698)
+|.+.+.. +..+..+++|++|++++|.+.+..+... +..+++|+.|++
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------------------------~~~~~~L~~L~L 458 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-------------------------------PSENPSLEQLFL 458 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS-------------------------------SCSCTTCCBCEE
T ss_pred cCccccCchhhhhhcCCccceeeCCCCcccccccccc-------------------------------cccCCccccccC
Confidence 99988542 2346789999999999999875533211 122456689999
Q ss_pred CCCcCC-----ccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccc
Q 047203 582 SSNNLS-----GEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 656 (698)
Q Consensus 582 ~~n~~~-----~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 656 (698)
++|.+. +..+..+.++++|+.|+|++|.+++..+..|..+++|++|++++|.+....|..+. ++|+.|++++|
T Consensus 459 s~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N 536 (844)
T 3j0a_A 459 GENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRN 536 (844)
T ss_dssp ESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEE
T ss_pred CCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCC
Confidence 999987 34456788999999999999999988889999999999999999999977776665 89999999999
Q ss_pred eeeecCCCCCccccCCCCccccCCCCCc
Q 047203 657 NLSGEIPKVNQFQSLKDPSIYEGNLALC 684 (698)
Q Consensus 657 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 684 (698)
++.+..|.. +.+++.+. ..+|++.|
T Consensus 537 ~l~~~~~~~--~~~L~~l~-l~~Np~~C 561 (844)
T 3j0a_A 537 QLLAPNPDV--FVSLSVLD-ITHNKFIC 561 (844)
T ss_dssp CCCCCCSCC--CSSCCEEE-EEEECCCC
T ss_pred cCCCCChhH--hCCcCEEE-ecCCCccc
Confidence 999988865 45777776 66767666
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-45 Score=399.43 Aligned_cols=497 Identities=21% Similarity=0.221 Sum_probs=352.9
Q ss_pred CcceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEE
Q 047203 3 RSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLD 82 (698)
Q Consensus 3 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 82 (698)
++++.|+++++++..++. ..+.++++|++|++++|.+++..+++|.++++|++|++++|.+.+..|.+|.++++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 479999999999988876 5678999999999999999988888999999999999999999988889999999999999
Q ss_pred CCCCCCCCcccchhccCCCCCCEEeCcCccCCCc-cchhhccccccccCCCCcEEEccCCcccccCCccccCCCCC----
Q 047203 83 LTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGE-VSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNL---- 157 (698)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L---- 157 (698)
+++|.+ ....+..++++++|++|++++|.++.. .+..+..++ +|++|++++|.++...+..++.+++|
T Consensus 107 L~~n~l-~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~ 179 (570)
T 2z63_A 107 AVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (570)
T ss_dssp CTTSCC-CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT------TCCEEECTTSCCCEECGGGGHHHHTCTTCC
T ss_pred cccccc-ccCCCccccccccccEEecCCCccceecChhhhcccC------CCCEEeCcCCccceecHHHccchhccchhh
Confidence 999985 333334599999999999999998874 356666555 89999999999998888889888888
Q ss_pred cEEEccCceeeecCCCCCcCcccCCeeeccCcccCc--cccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecc
Q 047203 158 RYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNG--FPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLY 235 (698)
Q Consensus 158 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 235 (698)
+++++++|.+....+..+... +|++|++++|.... ++..+..++.++...+....+. ....++.+.-.
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~---------~~~~l~~~~~~ 249 (570)
T 2z63_A 180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR---------NEGNLEKFDKS 249 (570)
T ss_dssp CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECC---------CCSSCEECCTT
T ss_pred hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccccc---------Cchhhhhcchh
Confidence 899999999998888777666 89999999885433 6677788888887766533221 11111111110
Q ss_pred cccccceeeeecCCCccCCcceeEEEeccc-cCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccc
Q 047203 236 KLSENISLIFNISSHWIPPFKLTFIKIRSC-QLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSN 314 (698)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 314 (698)
. ... .....++.+++..+ .+....+.++..+++|+.|++++|.+..
T Consensus 250 ~-----------~~~-l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--------------------- 296 (570)
T 2z63_A 250 A-----------LEG-LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER--------------------- 296 (570)
T ss_dssp T-----------TGG-GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS---------------------
T ss_pred h-----------hcc-ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh---------------------
Confidence 0 000 00113444444444 3333444444445555555544444331
Q ss_pred cccccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCcccc
Q 047203 315 ELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIG 394 (698)
Q Consensus 315 ~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 394 (698)
++..+.. + +|++|++++|.+... +. .
T Consensus 297 -------------------------------------------------l~~~~~~-~-~L~~L~l~~n~~~~l-~~--~ 322 (570)
T 2z63_A 297 -------------------------------------------------VKDFSYN-F-GWQHLELVNCKFGQF-PT--L 322 (570)
T ss_dssp -------------------------------------------------CCBCCSC-C-CCSEEEEESCBCSSC-CB--C
T ss_pred -------------------------------------------------hhhhhcc-C-CccEEeeccCccccc-Cc--c
Confidence 1211111 3 455555555555421 11 2
Q ss_pred CccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCcccccc--CccccccCCCcEEEccCCeeeeeCCCCCCCCCCCC
Q 047203 395 NLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEI--PDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMD 472 (698)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 472 (698)
.+++|+.|++++|.+....+. ..+++|++|++++|.+.... +..+..+++|++|++++|.+.+..+. +..+++|+
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~ 399 (570)
T 2z63_A 323 KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE 399 (570)
T ss_dssp BCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCC
T ss_pred cccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCC
Confidence 355666666666655433322 45666677777666665432 44556677777777777776644333 67777777
Q ss_pred EEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCc-cCCCcccccccCCCcCCCCC
Q 047203 473 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLS-GFIPSCVGNFSRMKIEPPDS 551 (698)
Q Consensus 473 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~~~~~~ 551 (698)
+|++++|.+.+..+...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L------- 472 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL------- 472 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC-------
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC-------
Confidence 78887777765444444555788888888888887777777888888888888888876 4566666555555
Q ss_pred cccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccC
Q 047203 552 VEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSK 631 (698)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~ 631 (698)
++|++++|.+++..|..+.++++|++|++++|++++..+..+..+++|++|++++
T Consensus 473 -------------------------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 527 (570)
T 2z63_A 473 -------------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527 (570)
T ss_dssp -------------------------CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -------------------------CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence 7888888888878788888899999999999998877778888899999999999
Q ss_pred CcccccCC
Q 047203 632 NKLSGSIP 639 (698)
Q Consensus 632 ~~~~~~~~ 639 (698)
|.+....|
T Consensus 528 N~~~~~~~ 535 (570)
T 2z63_A 528 NPWDCSCP 535 (570)
T ss_dssp SCBCCCTT
T ss_pred CcccCCCc
Confidence 98886654
No 13
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.6e-42 Score=386.57 Aligned_cols=542 Identities=22% Similarity=0.179 Sum_probs=400.4
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCC
Q 047203 7 ELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGN 86 (698)
Q Consensus 7 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 86 (698)
..+.++.+++.+|...+ +++++|||++|.|++..+.+|.++++|++|+|++|.+.++.|++|.++++|++|++++|
T Consensus 35 ~~~c~~~~l~~vP~~lp----~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP----FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCSSCCSSSC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcCccCCCCC----cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 45666677888887554 57999999999999888889999999999999999999888899999999999999999
Q ss_pred CCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCccccc-CCccccCCCCCcEEEccCc
Q 047203 87 SFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGD-LPNSLGYLKNLRYLELWDN 165 (698)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~ 165 (698)
.+ ....+..|.++++|++|++++|+++.+....|..++ +|++|++++|.++.. .|..+..+++|++|++++|
T Consensus 111 ~l-~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 111 PI-QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CC-CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCT------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cC-CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCc------ccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 84 444456789999999999999999987777776666 799999999998764 5788889999999999999
Q ss_pred eeeecCCCCCcCcccCC----eeeccCcccCccccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccc
Q 047203 166 SFVGSIPPSIGNLTFLK----ELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENI 241 (698)
Q Consensus 166 ~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 241 (698)
++.+..+..+..+.+++ .++++.+.++.++........++.+++.++..........+..+..++...+......
T Consensus 184 ~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~- 262 (635)
T 4g8a_A 184 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR- 262 (635)
T ss_dssp CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCT-
T ss_pred cccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccc-
Confidence 99887777777665544 6788888888877666666677788888775543344445566666655444320000
Q ss_pred eeeeecCCCccCCcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccCC
Q 047203 242 SLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIP 321 (698)
Q Consensus 242 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 321 (698)
....+.......+.....+....+..+....... +...
T Consensus 263 ---------------------~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---------------------~~~~ 300 (635)
T 4g8a_A 263 ---------------------NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD---------------------GIID 300 (635)
T ss_dssp ---------------------TSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEE---------------------ECTT
T ss_pred ---------------------cccccccccccccccccchhhhhhhhhhhccccc---------------------chhh
Confidence 0000001111112222222222222211110000 0000
Q ss_pred CCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcE
Q 047203 322 NSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLT 401 (698)
Q Consensus 322 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 401 (698)
......+++.+.+.++.+....+. .....++.|++.+|.+..... ..++.|+.
T Consensus 301 ---------------------~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~ 353 (635)
T 4g8a_A 301 ---------------------LFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQHLELVNCKFGQFPT---LKLKSLKR 353 (635)
T ss_dssp ---------------------TTGGGTTCSEEEEESCEEEECGGG---GSCCCCSEEEEESCEESSCCC---CBCTTCCE
T ss_pred ---------------------hhhhhccccccccccccccccccc---ccchhhhhhhcccccccCcCc---ccchhhhh
Confidence 001123555666665555432221 236678888888887764433 23677888
Q ss_pred EEeeCCccccCcCccCCCCCCccEEEcccCcccc--ccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCC
Q 047203 402 LVISNNNLSGEIPQLWSNISSLYILDMSNNTLSG--EIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN 479 (698)
Q Consensus 402 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n 479 (698)
+.+..+..... ..+..+++|+.+++++|.+.. ..+..+....+|+.+++..+... ..+..+..+++|+.+++.++
T Consensus 354 l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~ 430 (635)
T 4g8a_A 354 LTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 430 (635)
T ss_dssp EEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTS
T ss_pred cccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhc
Confidence 88888876532 234567889999999988753 23445566789999999998876 45567888999999999998
Q ss_pred cCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCcc-CCCcccccccCCCcCCCCCcccccce
Q 047203 480 QLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSG-FIPSCVGNFSRMKIEPPDSVEYEGSL 558 (698)
Q Consensus 480 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~~~ 558 (698)
......+...+..+++++.+++++|.+....+..+..+++|++|++++|...+ ..|..+..+++|
T Consensus 431 ~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L-------------- 496 (635)
T 4g8a_A 431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL-------------- 496 (635)
T ss_dssp EEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC--------------
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcccc--------------
Confidence 87766666667778999999999999988888888999999999999997543 456666555555
Q ss_pred EEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccC
Q 047203 559 QVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSI 638 (698)
Q Consensus 559 ~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~ 638 (698)
++|++++|.+++..|..|.++++|++|+|++|++++..+..|.++++|++|++++|++....
T Consensus 497 ------------------~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 558 (635)
T 4g8a_A 497 ------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558 (635)
T ss_dssp ------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCC
T ss_pred ------------------CEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCC
Confidence 88999999999999999999999999999999999888889999999999999999999999
Q ss_pred CcCccCC-CCCCeEecccceeeecCCC
Q 047203 639 PPSMVSL-TFMNHLNLSYNNLSGEIPK 664 (698)
Q Consensus 639 ~~~l~~l-~~L~~L~l~~n~~~~~~p~ 664 (698)
|+.+..+ ++|+.|+|++||+......
T Consensus 559 ~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 559 KQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp SSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred HHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 9999988 7899999999999986543
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.7e-43 Score=386.48 Aligned_cols=498 Identities=20% Similarity=0.217 Sum_probs=337.3
Q ss_pred ceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECC
Q 047203 5 LVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLT 84 (698)
Q Consensus 5 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 84 (698)
....+.++++++.+|...+ ++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|++|.++++|++|+++
T Consensus 7 ~~~c~~~~~~l~~ip~~~~----~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 7 SGVCDGRSRSFTSIPSGLT----AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp TSEEECTTSCCSSCCSCCC----TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CceEECCCCccccccccCC----CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 3446777888888887432 789999999999998888889999999999999999998888899999999999999
Q ss_pred CCCCCCcccchhccCCCCCCEEeCcCccCCCcc-chhhccccccccCCCCcEEEccCCc-ccccCCccccCCCCCcEEEc
Q 047203 85 GNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEV-SDFINGLSECTNSSLLEKLELGFNQ-LTGDLPNSLGYLKNLRYLEL 162 (698)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~l~~L~~L~l 162 (698)
+|.+ ....+..|+++++|++|++++|.++... +..+..++ +|++|++++|. +....+..+..+++|++|++
T Consensus 83 ~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~------~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 83 DNHL-SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp TSCC-CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT------TCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCcc-CccCHHHhccCCCCcEEECCCCcccccchhhhhhccC------CccEEECCCCccccccCHhhhhcccccCeeec
Confidence 9984 4455666899999999999999887532 23343333 78888888887 44444567778888888888
Q ss_pred cCceeeecCCCCCcCcccCCeeeccCcccCcccccc-CCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccc
Q 047203 163 WDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESF-GQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENI 241 (698)
Q Consensus 163 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 241 (698)
++|.+.+..|..++.+++|++|+++++.+..+|.++ ..+++|+.|++++|.+.+....
T Consensus 156 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------- 214 (549)
T 2z81_A 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS--------------------- 214 (549)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------
T ss_pred cCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccc---------------------
Confidence 888887777777888888888888877776655443 4567777777777765431100
Q ss_pred eeeeecCCCccCCcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCchhhh---hccCCcEEEeccccccc
Q 047203 242 SLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQ---LDLALDELDVGSNELSG 318 (698)
Q Consensus 242 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~l~~ 318 (698)
.......+++|+.|+++++.+.+..+..+.. ..+.++.+++++|.+.+
T Consensus 215 -----------------------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 215 -----------------------------PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp -----------------------------CCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred -----------------------------ccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 0001122344555555555444322211111 11223333333332221
Q ss_pred cCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccC
Q 047203 319 RIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQ 398 (698)
Q Consensus 319 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~ 398 (698)
.... . .........+++++.+++.++.+.... .+.
T Consensus 266 ~~~~--------------------------------------~-~~~~~~~~~l~~L~~L~l~~~~i~~~~--~~~---- 300 (549)
T 2z81_A 266 LGDF--------------------------------------N-PSESDVVSELGKVETVTIRRLHIPQFY--LFY---- 300 (549)
T ss_dssp CSCC--------------------------------------C-CCTTTCCCCCTTCCEEEEESCBCSCGG--GSC----
T ss_pred cccc--------------------------------------c-ccchhhhhhhcccccccccccccchhh--hcc----
Confidence 0000 0 000000112444555555544432110 000
Q ss_pred CcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccc-cccCCCcEEEccCCeeeeeC---CCCCCCCCCCCEE
Q 047203 399 LLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSI-GCLLSVRFLILCNNHISGEV---PPSLKNCSMMDSL 474 (698)
Q Consensus 399 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L 474 (698)
..+..+...++|++|++++|.+.. .+..+ ..+++|++|++++|.+.+.. +..+..+++|++|
T Consensus 301 -------------~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 301 -------------DLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp -------------CCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred -------------cchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence 011112234567777777777653 33333 45777777777777776543 2346778889999
Q ss_pred EcCCCcCcccCch--hhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCc
Q 047203 475 DLGDNQLSGNIPA--WIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSV 552 (698)
Q Consensus 475 ~L~~n~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~ 552 (698)
++++|++. .++. ..+..+++|+.|++++|++. .+|..+..+++|++|++++|.+.+. |..+
T Consensus 367 ~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~-------------- 429 (549)
T 2z81_A 367 VLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI-------------- 429 (549)
T ss_dssp ECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--------------
T ss_pred EccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--------------
Confidence 99999887 3432 34556899999999999888 6777888899999999999987632 2111
Q ss_pred ccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCC
Q 047203 553 EYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKN 632 (698)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~ 632 (698)
.++|++|++++|.+++.. ..+++|++|++++|+++ .+|. ...+++|++|++++|
T Consensus 430 --------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 430 --------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRN 483 (549)
T ss_dssp --------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSS
T ss_pred --------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCC
Confidence 135688999999998643 57899999999999998 6665 467899999999999
Q ss_pred cccccCCcCccCCCCCCeEecccceeeecCCCC
Q 047203 633 KLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV 665 (698)
Q Consensus 633 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 665 (698)
.+.+..|+.+..+++|+.|++++|++.+..|..
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 484 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp CCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred ccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 999888888999999999999999999888843
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.2e-42 Score=374.07 Aligned_cols=423 Identities=18% Similarity=0.145 Sum_probs=282.9
Q ss_pred CcceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEE
Q 047203 3 RSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLD 82 (698)
Q Consensus 3 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 82 (698)
++|++|++++|++.+.+. ..+.++++|++|++++|.+++..+++|..+++|++|++++|.+.+..|.+|+++++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECS-STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccCh-hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 579999999999988765 4678999999999999999988889999999999999999999988888899999999999
Q ss_pred CCCCCCCCcccchhccCCCCCCEEeCcCcc-CCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEE
Q 047203 83 LTGNSFLGGRLSRNLGKLCNLRTLKLSRNS-ISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLE 161 (698)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 161 (698)
+++|.+.....+..++++++|++|++++|. +.......+..++ +|++|++++|.+++..+..+..+++|++|+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT------SLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC------EEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc------ccCeeeccCCcccccChhhhhccccCceEe
Confidence 999996444567789999999999999998 4444445565555 799999999999998999999999999999
Q ss_pred ccCceeeecCCCC-CcCcccCCeeeccCcccCccc----cccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEeccc
Q 047203 162 LWDNSFVGSIPPS-IGNLTFLKELYLSSNQMNGFP----ESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYK 236 (698)
Q Consensus 162 l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (698)
++++.+. ..+.+ +..+++|++|++++|.++..+ .....+++|+.|+++++.+.+.......
T Consensus 179 l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~------------- 244 (549)
T 2z81_A 179 LHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL------------- 244 (549)
T ss_dssp EECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH-------------
T ss_pred cccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH-------------
Confidence 9999876 33333 356899999999999998852 2335678999999999987654322110
Q ss_pred ccccceeeeecCCCccCCcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCch-----hhhhccCCcEEEe
Q 047203 237 LSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNW-----FWQLDLALDELDV 311 (698)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~~L~~L~l 311 (698)
..+..+++|+.+++++|.+....... .....++++.+.+
T Consensus 245 ------------------------------------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l 288 (549)
T 2z81_A 245 ------------------------------------KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI 288 (549)
T ss_dssp ------------------------------------GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred ------------------------------------HHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence 11122223333333333322110000 0000122333333
Q ss_pred ccccccccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCc
Q 047203 312 GSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPK 391 (698)
Q Consensus 312 ~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 391 (698)
.++.+..... ....+ ......++|++|++++|.+......
T Consensus 289 ~~~~i~~~~~---------------------------------------~~~l~-~~~~~~~~L~~L~l~~n~l~~ip~~ 328 (549)
T 2z81_A 289 RRLHIPQFYL---------------------------------------FYDLS-TVYSLLEKVKRITVENSKVFLVPCS 328 (549)
T ss_dssp ESCBCSCGGG---------------------------------------SCCCC-HHHHHSTTCCEEEEESSCCCCCCHH
T ss_pred cccccchhhh---------------------------------------cccch-hhhhhcccceEEEeccCccccCCHH
Confidence 2222110000 00001 1112245677777777766532222
Q ss_pred cccCccCCcEEEeeCCccccCcC---ccCCCCCCccEEEcccCccccccC--ccccccCCCcEEEccCCeeeeeCCCCCC
Q 047203 392 SIGNLQQLLTLVISNNNLSGEIP---QLWSNISSLYILDMSNNTLSGEIP--DSIGCLLSVRFLILCNNHISGEVPPSLK 466 (698)
Q Consensus 392 ~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 466 (698)
.+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++ ..|..+.
T Consensus 329 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 407 (549)
T 2z81_A 329 FSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ 407 (549)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC
T ss_pred HHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc
Confidence 22456777777777777665432 235667777777777777764422 34666777777777777776 5566677
Q ss_pred CCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCc
Q 047203 467 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLS 531 (698)
Q Consensus 467 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (698)
.+++|++|++++|++. .++..+ +++|+.|++++|.+++.. ..+++|++|++++|.++
T Consensus 408 ~~~~L~~L~Ls~N~l~-~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~ 464 (549)
T 2z81_A 408 WPEKMRFLNLSSTGIR-VVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK 464 (549)
T ss_dssp CCTTCCEEECTTSCCS-CCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS
T ss_pred ccccccEEECCCCCcc-cccchh---cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC
Confidence 7777777777777766 444332 346666666666655321 34555555555555544
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=361.07 Aligned_cols=457 Identities=19% Similarity=0.223 Sum_probs=339.7
Q ss_pred eEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCC
Q 047203 6 VELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG 85 (698)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 85 (698)
++|++++++++.+|...+ ++|++|++++|.+++..+.+|.++++|++|++++|.+.+..|++|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~----~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS----QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC----TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc----ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 679999999999887443 8999999999999988788999999999999999999988899999999999999999
Q ss_pred CCCCCcccchhccCCCCCCEEeCcCccCCCc-cchhhccccccccCCCCcEEEccCCcccccCCccccCCCCC--cEEEc
Q 047203 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSISGE-VSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNL--RYLEL 162 (698)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L--~~L~l 162 (698)
|.+. .++.. .+++|++|++++|.+++. .+..+..++ +|++|++++|.++. ..+..+++| ++|++
T Consensus 79 N~l~--~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~------~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 79 NKLV--KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMS------QLKFLGLSTTHLEK---SSVLPIAHLNISKVLL 145 (520)
T ss_dssp SCCC--EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCT------TCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred Ccee--ecCcc--ccCCccEEeccCCccccccchhhhccCC------cceEEEecCcccch---hhccccccceeeEEEe
Confidence 9863 45555 899999999999999874 446666665 79999999998875 467777788 99999
Q ss_pred cCcee--eecCCCCCcCcc-cCCeeeccCcccCc--cccccCCCCCCcEEEccCCe-------eeeecCchhhcCCCCcc
Q 047203 163 WDNSF--VGSIPPSIGNLT-FLKELYLSSNQMNG--FPESFGQLSAIEVLDLDENQ-------WEGIITETHFRNLSNLK 230 (698)
Q Consensus 163 ~~~~~--~~~~~~~l~~l~-~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~-------~~~~~~~~~~~~l~~L~ 230 (698)
++|.+ .+..|..+..+. +..++++++|.+.. .+..+..+++|+.+++++|. +.+.++ .+..+++|+
T Consensus 146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~ 223 (520)
T 2z7x_B 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLS 223 (520)
T ss_dssp EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCC
T ss_pred ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchh
Confidence 99988 667777777665 34456777777665 33467788899999998875 443332 467788888
Q ss_pred EEecccccccceeeeecCCCccCCcceeEEEeccccCCccCCccc-----cCCCCccEEEccCCcCcCCCCchhhhhccC
Q 047203 231 EISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWL-----RNQTELTTLVLNNARISDTVPNWFWQLDLA 305 (698)
Q Consensus 231 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 305 (698)
.+++..+............ .....+++.+++++|.+.+..|.++ ..++.|+.++++++.+ ......+....+.
T Consensus 224 ~L~l~~~~l~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~ 301 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIRILQ-LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSN 301 (520)
T ss_dssp EEEEEEEEEEHHHHHHHHH-HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHT
T ss_pred hccccccccCHHHHHHHHH-HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhccccc
Confidence 8887653211000000000 0112467777777777766666666 6677777777777766 2221223222110
Q ss_pred CcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcC
Q 047203 306 LDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSL 385 (698)
Q Consensus 306 L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 385 (698)
.+++.|++++|.+.... +...+++|++|++++|.+
T Consensus 302 ------------------------------------------~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 302 ------------------------------------------MNIKNFTVSGTRMVHML---CPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp ------------------------------------------CCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCC
T ss_pred ------------------------------------------CceeEEEcCCCcccccc---chhhCCcccEEEeECCcc
Confidence 13444444444443211 113478888888888888
Q ss_pred CCCCCccccCccCCcEEEeeCCcccc--CcCccCCCCCCccEEEcccCcccc-ccCccccccCCCcEEEccCCeeeeeCC
Q 047203 386 NGSVPKSIGNLQQLLTLVISNNNLSG--EIPQLWSNISSLYILDMSNNTLSG-EIPDSIGCLLSVRFLILCNNHISGEVP 462 (698)
Q Consensus 386 ~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~ 462 (698)
.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+.+ .....+..+++|++|++++|.+++..+
T Consensus 337 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp CTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred ChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence 87677778888899999999988875 344668888999999999999887 333457778899999999998876666
Q ss_pred CCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCCh-hhccCCCCCEEECCCCcCccC
Q 047203 463 PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP-ELCKLSALHILDLSHNNLSGF 533 (698)
Q Consensus 463 ~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~ 533 (698)
..+. ++|++|++++|++. .+|..++ .+++|+.|++++|++++ +|. .+..+++|++|++++|++...
T Consensus 417 ~~l~--~~L~~L~Ls~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 417 RCLP--PRIKVLDLHSNKIK-SIPKQVV-KLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp GSCC--TTCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred hhhc--ccCCEEECCCCccc-ccchhhh-cCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 5553 78999999999998 8888877 49999999999999984 554 488999999999999998754
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=360.76 Aligned_cols=461 Identities=20% Similarity=0.225 Sum_probs=298.4
Q ss_pred cEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEEeCcC
Q 047203 31 QVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSR 110 (698)
Q Consensus 31 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (698)
+++++++|.++ .+|..+. ++|++|++++|.+.+..|.+|.++++|++|++++|. .....+..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCC
Confidence 68999999998 4677665 899999999999998888899999999999999999 4455678899999999999999
Q ss_pred ccCCCccchhhccccccccCCCCcEEEccCCccccc-CCccccCCCCCcEEEccCceeeecCCCCCcCcccC--Ceeecc
Q 047203 111 NSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGD-LPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFL--KELYLS 187 (698)
Q Consensus 111 ~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~ 187 (698)
|+++.+... .+++|++|++++|.+++. .|..++.+++|++|++++|.+.+ ..+..+++| ++|+++
T Consensus 79 N~l~~lp~~---------~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 79 NKLVKISCH---------PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLV 146 (520)
T ss_dssp SCCCEEECC---------CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEE
T ss_pred CceeecCcc---------ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEee
Confidence 998854332 344899999999999874 67899999999999999998874 357778888 999999
Q ss_pred Cccc--Cc-cccccCCCC-CCcEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEec
Q 047203 188 SNQM--NG-FPESFGQLS-AIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIR 263 (698)
Q Consensus 188 ~~~~--~~-~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 263 (698)
+|.+ .. .|..+..+. ....+++++|.+.+......+..+++|+.+++..+... .
T Consensus 147 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~----------------------~ 204 (520)
T 2z7x_B 147 LGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED----------------------N 204 (520)
T ss_dssp ECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST----------------------T
T ss_pred cccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccc----------------------c
Confidence 9988 44 566666555 23345666666555444444455555555444331100 0
Q ss_pred cc-cCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCC
Q 047203 264 SC-QLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGP 342 (698)
Q Consensus 264 ~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~ 342 (698)
.+ .+....+ .+..+++|+.|+++++.+.+.....+...
T Consensus 205 ~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~---------------------------------------- 243 (520)
T 2z7x_B 205 KCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL---------------------------------------- 243 (520)
T ss_dssp TTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH----------------------------------------
T ss_pred ccceeecchh-hhccccchhhccccccccCHHHHHHHHHH----------------------------------------
Confidence 00 0111112 34445555555555544432211111000
Q ss_pred CCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccc-----cCccCCcEEEeeCCccccCcCccC
Q 047203 343 LPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSI-----GNLQQLLTLVISNNNLSGEIPQLW 417 (698)
Q Consensus 343 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~ 417 (698)
. ..++|++|++++|.+.+..+..+ ..+++|+.+++++|.+ ......+
T Consensus 244 -------------------------~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~ 295 (520)
T 2z7x_B 244 -------------------------V--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYI 295 (520)
T ss_dssp -------------------------H--HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHH
T ss_pred -------------------------h--hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhh
Confidence 0 01233333333333332222222 3445555555555544 1111112
Q ss_pred CCC---CCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcc--cCchhhhhc
Q 047203 418 SNI---SSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG--NIPAWIGES 492 (698)
Q Consensus 418 ~~l---~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~--~~~~~~~~~ 492 (698)
..+ ++|+.|++++|.+.... .+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+ .+|.. +..
T Consensus 296 ~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~~~ 372 (520)
T 2z7x_B 296 YEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM-TTQ 372 (520)
T ss_dssp HHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH-HTT
T ss_pred hcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH-Hhh
Confidence 111 34556666665554321 11455666667777776665566667777777777777777763 22232 334
Q ss_pred CCCCcEEEccCCcccccCCh-hhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeec
Q 047203 493 MPSLSILRLRSNYFNGTIPP-ELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYS 571 (698)
Q Consensus 493 l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (698)
+++|+.|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+.
T Consensus 373 l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-------------------------------- 420 (520)
T 2z7x_B 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP-------------------------------- 420 (520)
T ss_dssp CTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--------------------------------
T ss_pred CCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--------------------------------
Confidence 77888888888877764544 367778888888888877655443332
Q ss_pred cccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCc-cccCCCCCCeEeccCCccccc
Q 047203 572 TLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPT-QIGKLEWLESLDLSKNKLSGS 637 (698)
Q Consensus 572 ~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~sL~~L~l~~~~~~~~ 637 (698)
++|+.|++++|.++ .+|..+..+++|++|++++|+++ .+|. .+..+++|++|++++|.+...
T Consensus 421 --~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 421 --PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp --TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred --ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence 34478888888888 67777778899999999999888 4554 488889999999999988754
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.9e-41 Score=369.14 Aligned_cols=249 Identities=21% Similarity=0.292 Sum_probs=174.6
Q ss_pred CCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCC-ccEEEcccCccccccCccccccC--CCc
Q 047203 372 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISS-LYILDMSNNTLSGEIPDSIGCLL--SVR 448 (698)
Q Consensus 372 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~~~--~L~ 448 (698)
+++|++|++++|.+.+.++ .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .++..+...+ +|+
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMS 405 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEE
T ss_pred CCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccC
Confidence 5566666666666553344 5555666666666666666 45555666666 666666666666 4444444433 677
Q ss_pred EEEccCCeeeeeCCCCCC-------CCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCCh-hhccCC--
Q 047203 449 FLILCNNHISGEVPPSLK-------NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP-ELCKLS-- 518 (698)
Q Consensus 449 ~L~l~~~~~~~~~~~~l~-------~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~-- 518 (698)
+|++++|.+.+..|..+. .+++|++|++++|.+. .+|..++..+++|+.|++++|.+. .+|. .+....
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~ 483 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENEN 483 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEE
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccc
Confidence 777777776665666565 6677888888888877 677777766788888888888877 4443 333332
Q ss_pred -----CCCEEECCCCcCccCCCcccc--cccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCC
Q 047203 519 -----ALHILDLSHNNLSGFIPSCVG--NFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMP 591 (698)
Q Consensus 519 -----~L~~L~l~~~~~~~~~~~~~~--~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 591 (698)
+|++|++++|.+. .+|..+. .+++| +.|++++|.+++ +|
T Consensus 484 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L--------------------------------~~L~Ls~N~l~~-ip 529 (636)
T 4eco_A 484 FKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL--------------------------------VGIDLSYNSFSK-FP 529 (636)
T ss_dssp CTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC--------------------------------CEEECCSSCCSS-CC
T ss_pred ccccCCccEEECcCCcCC-ccChhhhhccCCCc--------------------------------CEEECCCCCCCC-cC
Confidence 7888888888877 4555443 44444 778888888886 77
Q ss_pred hhhhccCCCCEEeC------CCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecC
Q 047203 592 VELTRLIHLGTLNL------SQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEI 662 (698)
Q Consensus 592 ~~l~~l~~L~~L~l------~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 662 (698)
..+.++++|++|++ ++|++.+.+|..+..+++|++|++++|.+ +.+|..+. ++|+.|+|++|++...-
T Consensus 530 ~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 530 TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred hhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 78888888888888 55777778888898999999999999999 47777665 79999999999887543
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.4e-39 Score=356.12 Aligned_cols=509 Identities=22% Similarity=0.216 Sum_probs=335.1
Q ss_pred CcceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEE
Q 047203 3 RSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLD 82 (698)
Q Consensus 3 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 82 (698)
+++++|+|++|+++.++. ..|.++++|++|+|++|.++++.+++|.++++|++|+|++|++.+..+.+|.++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 378999999999999887 6778999999999999999988888999999999999999999987788899999999999
Q ss_pred CCCCCCCCcccchhccCCCCCCEEeCcCccCCCcc-chhhccccccccCCCCcEEEccCCcccccCCccccCCCC----C
Q 047203 83 LTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEV-SDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKN----L 157 (698)
Q Consensus 83 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~----L 157 (698)
+++|.+ ....+..|+++++|++|++++|.++... +..+..+. .|++|++++|.+++..+..+..+.+ .
T Consensus 131 Ls~N~l-~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 131 AVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp CTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT------TCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCcC-CCCChhhhhcCcccCeeccccCccccCCCchhhccch------hhhhhcccCccccccccccccchhhhhhhh
Confidence 999984 4444556999999999999999988643 45555555 8999999999999888888776544 4
Q ss_pred cEEEccCceeeecCCCCCcCcccCCeeeccCcccCc--cccccCCCCCCcEEEccCCeeeee-----cCchhhcCCCCcc
Q 047203 158 RYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNG--FPESFGQLSAIEVLDLDENQWEGI-----ITETHFRNLSNLK 230 (698)
Q Consensus 158 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~ 230 (698)
..++++.+.+....+. ......++.+++.++.... .+..+..++.++...+..+..... .....+.....+
T Consensus 204 ~~~~ls~n~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l- 281 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL- 281 (635)
T ss_dssp CEEECTTCCCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS-
T ss_pred hhhhcccCcccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch-
Confidence 4788999988855554 4444567788888776543 445566777777666543221110 001111222222
Q ss_pred EEecccccccceeeeecCCCccCCcceeEEEeccccC---CccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCc
Q 047203 231 EISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQL---GPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALD 307 (698)
Q Consensus 231 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 307 (698)
....+..... .......+....+++.+.+.++.+...... .....++
T Consensus 282 ---------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~L~ 331 (635)
T 4g8a_A 282 ---------------------------TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDF---SYNFGWQ 331 (635)
T ss_dssp ---------------------------EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGG---GSCCCCS
T ss_pred ---------------------------hhhhhhhhhhcccccchhhhhhhhccccccccccccccccccc---ccchhhh
Confidence 2222221111 112223344455556666555544322211 0112333
Q ss_pred EEEeccccccccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCC
Q 047203 308 ELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNG 387 (698)
Q Consensus 308 ~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 387 (698)
.+++.++ .+...... .++.|+.+++..+....
T Consensus 332 ~L~l~~~--------------------------------------------~~~~~~~~----~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 332 HLELVNC--------------------------------------------KFGQFPTL----KLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEESC--------------------------------------------EESSCCCC----BCTTCCEEEEESCCSCC
T ss_pred hhhcccc--------------------------------------------cccCcCcc----cchhhhhcccccccCCC
Confidence 3333333 33211111 24455555555554432
Q ss_pred CCCccccCccCCcEEEeeCCcccc--CcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCC-CC
Q 047203 388 SVPKSIGNLQQLLTLVISNNNLSG--EIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVP-PS 464 (698)
Q Consensus 388 ~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~ 464 (698)
. .....+++|+.+++++|.+.. ..+..+..+.+|+++++..+..... +..+..+++|+.+++..+......+ ..
T Consensus 364 ~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 364 A--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp B--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred C--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccc
Confidence 1 122345666666666665542 2233344556677777776665532 3345566777777777666543332 34
Q ss_pred CCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCccc-ccCChhhccCCCCCEEECCCCcCccCCCcccccccC
Q 047203 465 LKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN-GTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSR 543 (698)
Q Consensus 465 l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 543 (698)
+..+++++.+++++|.+.+ .+...+..+++|+.|++++|... ...|..+..+++|++|++++|.+.+..|..+.++++
T Consensus 441 ~~~l~~l~~l~ls~n~l~~-~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp TTTCTTCCEEECTTSCCEE-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccccccccccccccccccc-ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 6667777777777777763 33334444777777777777643 345667777778888888888777777766666666
Q ss_pred CCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCC-C
Q 047203 544 MKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKL-E 622 (698)
Q Consensus 544 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~ 622 (698)
| ++|++++|++++..+..|.++++|+.|++++|++++..|+.+..+ +
T Consensus 520 L--------------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 520 L--------------------------------QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 567 (635)
T ss_dssp C--------------------------------CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCT
T ss_pred C--------------------------------CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhC
Confidence 6 778888888877777778888888888888888887777777776 6
Q ss_pred CCCeEeccCCccc
Q 047203 623 WLESLDLSKNKLS 635 (698)
Q Consensus 623 sL~~L~l~~~~~~ 635 (698)
+|++|++++|.+.
T Consensus 568 ~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 568 SLAFLNLTQNDFA 580 (635)
T ss_dssp TCCEEECTTCCBC
T ss_pred cCCEEEeeCCCCc
Confidence 7888888887776
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.1e-39 Score=352.61 Aligned_cols=159 Identities=21% Similarity=0.275 Sum_probs=85.0
Q ss_pred CccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccC-------ccCCcEEEeeCCccccCcCccCC--C
Q 047203 349 NVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGN-------LQQLLTLVISNNNLSGEIPQLWS--N 419 (698)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~--~ 419 (698)
+|+.|++++|.+. .++..++..+++|++|++++|.+.......+.. +++|+.|++++|.+. .+|..+. .
T Consensus 434 ~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence 4555555555554 444444445666666666666665332222221 226666666666666 3444443 5
Q ss_pred CCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEE
Q 047203 420 ISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSIL 499 (698)
Q Consensus 420 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 499 (698)
+++|++|++++|++.+ +|..+..+++|++|++++|. ++++|.+.+.+|..+.. +++|+.|
T Consensus 512 l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~------------------~ls~N~l~~~~p~~l~~-l~~L~~L 571 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGITL-CPSLTQL 571 (636)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB------------------CTTCCBCCCCCCTTGGG-CSSCCEE
T ss_pred CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc------------------ccccCcccccChHHHhc-CCCCCEE
Confidence 6666666666666664 45555566666666664332 12344444445544433 5555555
Q ss_pred EccCCcccccCChhhccCCCCCEEECCCCcCcc
Q 047203 500 RLRSNYFNGTIPPELCKLSALHILDLSHNNLSG 532 (698)
Q Consensus 500 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 532 (698)
++++|.+. .+|..+. ++|++|++++|++..
T Consensus 572 ~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 572 QIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp ECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE
T ss_pred ECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc
Confidence 55555552 4444433 556666666665543
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-39 Score=363.25 Aligned_cols=180 Identities=20% Similarity=0.274 Sum_probs=104.5
Q ss_pred CCCcEEECCCCCCCCCCCccccCCCCCCEEEc-ccCcccccCCccccCC----CC-----CcE------EECC-CCCCCC
Q 047203 28 TSLQVLDLSNNGFNSKIPHWLFNITRLSSLDL-NTNDLQGDIPDGFSSL----NS-----LQQ------LDLT-GNSFLG 90 (698)
Q Consensus 28 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~~~~~~~~~l----~~-----L~~------L~l~-~~~~~~ 90 (698)
.+++.|+|+++.+.+.+|.+|+++++|++|+| ++|.+.+..|...... .. ++. +... ... ..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~-~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN-LS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGG-SC
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchh-hh
Confidence 56889999999999889999999999999999 7776655422110000 00 000 0000 000 00
Q ss_pred ccc-----------chhccCCCCCCEEeCcC--ccCCCccchhhccccccccCCCCcEEEccCCcccc------------
Q 047203 91 GRL-----------SRNLGKLCNLRTLKLSR--NSISGEVSDFINGLSECTNSSLLEKLELGFNQLTG------------ 145 (698)
Q Consensus 91 ~~~-----------~~~~~~l~~L~~L~l~~--~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~------------ 145 (698)
... +........++.+.+.. |++++ .+..+..++ +|++|++++|.+++
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~------~L~~L~Ls~N~Lsg~~i~~~~~~~s~ 474 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLT------KLQIIYFANSPFTYDNIAVDWEDANS 474 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCT------TCCEEEEESCCCCGGGBSSSCSCTTS
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCC------CCCEEECcCCcCCCCccccccccccc
Confidence 000 00001111122222221 33333 222233222 45555555555554
Q ss_pred -----cCCcccc--CCCCCcEEEccCceeeecCCCCCcCcccCCeeeccCcc-cCc--cccccCCC-------CCCcEEE
Q 047203 146 -----DLPNSLG--YLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQ-MNG--FPESFGQL-------SAIEVLD 208 (698)
Q Consensus 146 -----~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~--~~~~l~~l-------~~L~~L~ 208 (698)
..|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ ++. +|..+..+ ++|+.|+
T Consensus 475 n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~ 554 (876)
T 4ecn_A 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554 (876)
T ss_dssp HHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEE
T ss_pred ccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEE
Confidence 3777766 88888888888888877888888888888888888887 764 66554444 4888888
Q ss_pred ccCCeee
Q 047203 209 LDENQWE 215 (698)
Q Consensus 209 l~~~~~~ 215 (698)
+++|.+.
T Consensus 555 Ls~N~L~ 561 (876)
T 4ecn_A 555 MGYNNLE 561 (876)
T ss_dssp CCSSCCC
T ss_pred eeCCcCC
Confidence 8887765
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-38 Score=355.55 Aligned_cols=202 Identities=19% Similarity=0.196 Sum_probs=122.0
Q ss_pred CcceEEeCCCCCCCCCCCCCCCCCCCCCcEEEC-CCCCCCCCCCcc----------------------------------
Q 047203 3 RSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDL-SNNGFNSKIPHW---------------------------------- 47 (698)
Q Consensus 3 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L-~~~~~~~~~~~~---------------------------------- 47 (698)
.+++.|+|+++++.+... ..+.++++|++|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 368899999999874433 47789999999999 777654331100
Q ss_pred -----------------ccCCCCCCEEEccc--CcccccCCccccCCCCCcEEECCCCCCCCc-----------------
Q 047203 48 -----------------LFNITRLSSLDLNT--NDLQGDIPDGFSSLNSLQQLDLTGNSFLGG----------------- 91 (698)
Q Consensus 48 -----------------~~~l~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----------------- 91 (698)
......++.+.+.. |.+.+ +|..|.++++|++|++++|.+ .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~L-sg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPF-TYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcC-CCCcccccccccccccccc
Confidence 01111222222222 44554 566666666666666666663 22
Q ss_pred ccchhcc--CCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCc-ccc-cCCccccC-------CCCCcEE
Q 047203 92 RLSRNLG--KLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQ-LTG-DLPNSLGY-------LKNLRYL 160 (698)
Q Consensus 92 ~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~-i~~-~~~~~~~~-------l~~L~~L 160 (698)
.+|..++ ++++|++|++++|.+.+..+..+..++ +|++|++++|. +++ ..|..+.. +++|++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~------~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP------ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS------SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhCCC------CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 1555555 666666666666666555555554444 56666666665 554 44443333 3367777
Q ss_pred EccCceeeecCCC--CCcCcccCCeeeccCcccCccccccCCCCCCcEEEccCCeee
Q 047203 161 ELWDNSFVGSIPP--SIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWE 215 (698)
Q Consensus 161 ~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 215 (698)
++++|.+. .+|. .++++++|++|++++|.++.+| .+..+++|+.|++++|.+.
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc
Confidence 77766666 5665 5666667777777766666666 6666666666666666554
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.6e-39 Score=348.70 Aligned_cols=468 Identities=18% Similarity=0.174 Sum_probs=255.9
Q ss_pred CCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEE
Q 047203 27 FTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTL 106 (698)
Q Consensus 27 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 106 (698)
+...++++++++.+++ +|..+. ++|++|++++|.+.+..|.+|.++++|++|++++|. .....+..|.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEE
Confidence 4445777777777774 555443 677777777777776666777777777777777777 334446667777777777
Q ss_pred eCcCccCCCccchhhccccccccCCCCcEEEccCCccccc-CCccccCCCCCcEEEccCceeeecCCCCCcCcccC--Ce
Q 047203 107 KLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGD-LPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFL--KE 183 (698)
Q Consensus 107 ~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~ 183 (698)
++++|+++.+... .+++|++|++++|.++.. .|..|+++++|++|++++|.+.. ..+..+++| ++
T Consensus 106 ~Ls~N~l~~lp~~---------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~ 173 (562)
T 3a79_B 106 DVSHNRLQNISCC---------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSC 173 (562)
T ss_dssp ECTTSCCCEECSC---------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEE
T ss_pred ECCCCcCCccCcc---------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeE
Confidence 7777777643322 233677777777777653 35677788888888888877653 245555555 77
Q ss_pred eeccCccc--Cc-cccccCCCCC-CcEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeE
Q 047203 184 LYLSSNQM--NG-FPESFGQLSA-IEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTF 259 (698)
Q Consensus 184 L~l~~~~~--~~-~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~ 259 (698)
|++++|.+ +. .|..+..++. .-.+++++|.+........
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~------------------------------------- 216 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMS------------------------------------- 216 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEE-------------------------------------
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhc-------------------------------------
Confidence 77777776 43 4444444331 1133444444332222212
Q ss_pred EEeccccCCccCCccccCCCCccEEEccCCcCcCC----CCchhhhhccCCcEEEeccccccccCCCCcCCCCCCeEECC
Q 047203 260 IKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDT----VPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLS 335 (698)
Q Consensus 260 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~ 335 (698)
+..+++|+.+++++|..... ....+. ..+.++.+++.++.+.
T Consensus 217 ---------------~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~-~l~~L~~L~L~~~~l~------------------ 262 (562)
T 3a79_B 217 ---------------VNALGHLQLSNIKLNDENCQRLMTFLSELT-RGPTLLNVTLQHIETT------------------ 262 (562)
T ss_dssp ---------------ESSEEEEEEEEEECCSTTHHHHHHHHHHHH-SCSSCEEEEEEEEEEC------------------
T ss_pred ---------------ccccceEEEecccccccccchHHHHHHHHh-ccCcceEEEecCCcCc------------------
Confidence 22233344444444321000 000000 0122222222222111
Q ss_pred CCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccc-----cCccCCcEEEeeCCccc
Q 047203 336 SNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSI-----GNLQQLLTLVISNNNLS 410 (698)
Q Consensus 336 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~ 410 (698)
++.+.+ .+... ..++|++|++++|.+.+.++..+ .+++.|+.+++..+.+
T Consensus 263 ---------------------~~~~~~-~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~- 317 (562)
T 3a79_B 263 ---------------------WKCSVK-LFQFF--WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF- 317 (562)
T ss_dssp ---------------------HHHHHH-HHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-
T ss_pred ---------------------HHHHHH-HHHhh--hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-
Confidence 001100 00000 12244444444444433222222 2233333333333332
Q ss_pred cCcC-ccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhh
Q 047203 411 GEIP-QLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWI 489 (698)
Q Consensus 411 ~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~ 489 (698)
..| ..+.. +....+|++|++++|.+... .....+++|++|++++|.+.+.++..+
T Consensus 318 -~~p~~~~~~---------------------~~~~~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~ 373 (562)
T 3a79_B 318 -LFSKEALYS---------------------VFAEMNIKMLSISDTPFIHM--VCPPSPSSFTFLNFTQNVFTDSVFQGC 373 (562)
T ss_dssp -SSCHHHHHH---------------------HHHTCCCSEEEEESSCCCCC--CCCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred -ecChhhhhh---------------------hhccCcceEEEccCCCcccc--cCccCCCCceEEECCCCccccchhhhh
Confidence 111 10000 00113455555555554311 111455566666666666654444333
Q ss_pred hhcCCCCcEEEccCCccccc--CChhhccCCCCCEEECCCCcCccCCCc-ccccccCCCcCCCCCcccccceEEeecccc
Q 047203 490 GESMPSLSILRLRSNYFNGT--IPPELCKLSALHILDLSHNNLSGFIPS-CVGNFSRMKIEPPDSVEYEGSLQVVLKGTQ 566 (698)
Q Consensus 490 ~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 566 (698)
. .+++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+.+|. .+..++
T Consensus 374 ~-~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~------------------------ 428 (562)
T 3a79_B 374 S-TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE------------------------ 428 (562)
T ss_dssp C-SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT------------------------
T ss_pred c-ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc------------------------
Confidence 2 366666666666666532 234466677777777777776653332 233333
Q ss_pred eeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcC-ccCC
Q 047203 567 YVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPS-MVSL 645 (698)
Q Consensus 567 ~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~-l~~l 645 (698)
+|++|++++|.+++..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|.+. .+|.. +..+
T Consensus 429 --------~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 496 (562)
T 3a79_B 429 --------SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRL 496 (562)
T ss_dssp --------TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred --------cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence 336777777777655444433 68999999999888 67777778999999999999998 45554 8899
Q ss_pred CCCCeEecccceeeecCCCCCc
Q 047203 646 TFMNHLNLSYNNLSGEIPKVNQ 667 (698)
Q Consensus 646 ~~L~~L~l~~n~~~~~~p~~~~ 667 (698)
++|+.|++++|++.+..|..+.
T Consensus 497 ~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp TTCCCEECCSCCBCCCHHHHHH
T ss_pred CCCCEEEecCCCcCCCcchHHH
Confidence 9999999999999987775544
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.5e-38 Score=343.37 Aligned_cols=458 Identities=20% Similarity=0.213 Sum_probs=330.7
Q ss_pred cceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEEC
Q 047203 4 SLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDL 83 (698)
Q Consensus 4 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 83 (698)
..+++++++++++.+|...+ ++|++|++++|.+++..+.+|.++++|++|++++|.+.+..|++|.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~----~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP----PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC----TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCccCCCCCC----CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 34789999999999887443 89999999999999888889999999999999999999988999999999999999
Q ss_pred CCCCCCCcccchhccCCCCCCEEeCcCccCCCcc-chhhccccccccCCCCcEEEccCCcccccCCccccCCCCC--cEE
Q 047203 84 TGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEV-SDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNL--RYL 160 (698)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L--~~L 160 (698)
++|.+. .++.. .+++|++|++++|.++... +..+..++ +|++|++++|.++.. .+..+++| ++|
T Consensus 108 s~N~l~--~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~------~L~~L~L~~n~l~~~---~~~~l~~L~L~~L 174 (562)
T 3a79_B 108 SHNRLQ--NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLT------KLTFLGLSAAKFRQL---DLLPVAHLHLSCI 174 (562)
T ss_dssp TTSCCC--EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCT------TCCEEEEECSBCCTT---TTGGGTTSCEEEE
T ss_pred CCCcCC--ccCcc--ccccCCEEECCCCCccccCchHhhcccC------cccEEecCCCccccC---chhhhhhceeeEE
Confidence 999963 45555 8999999999999998754 35666665 899999999998754 45555566 999
Q ss_pred EccCcee--eecCCCCCcCcc-cCCeeeccCcccCc-c-ccccCCCCCCcEEEccCCee-----eeecCchhhcCCCCcc
Q 047203 161 ELWDNSF--VGSIPPSIGNLT-FLKELYLSSNQMNG-F-PESFGQLSAIEVLDLDENQW-----EGIITETHFRNLSNLK 230 (698)
Q Consensus 161 ~l~~~~~--~~~~~~~l~~l~-~L~~L~l~~~~~~~-~-~~~l~~l~~L~~L~l~~~~~-----~~~~~~~~~~~l~~L~ 230 (698)
++++|.+ .+..|..+..+. ..-++++++|.+.. + ...+..+++|+.+++++|.. .+.. ..+..+++++
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~--~~l~~l~~L~ 252 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL--SELTRGPTLL 252 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH--HHHHSCSSCE
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH--HHHhccCcce
Confidence 9999998 767777776654 12256777777665 3 34567889999999998741 1111 2467778888
Q ss_pred EEecccccccceeeeecCCCccCCcceeEEEeccccCCccCCccc-----cCCCCccEEEccCCcCcCCCC-chhhhhcc
Q 047203 231 EISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWL-----RNQTELTTLVLNNARISDTVP-NWFWQLDL 304 (698)
Q Consensus 231 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~ 304 (698)
.+.+..+............ .....++++|++++|.+.+..|.++ ..++.|+.+++..+.+ ..+ ..+....+
T Consensus 253 ~L~L~~~~l~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~ 329 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFA 329 (562)
T ss_dssp EEEEEEEEECHHHHHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHH
T ss_pred EEEecCCcCcHHHHHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhc
Confidence 8877653221100001111 1122367777777777665666555 4444444444444444 111 11111100
Q ss_pred CCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCc
Q 047203 305 ALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNS 384 (698)
Q Consensus 305 ~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 384 (698)
..+++.|++++|.+.... +...+++|++|++++|.
T Consensus 330 ------------------------------------------~~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~ 364 (562)
T 3a79_B 330 ------------------------------------------EMNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNV 364 (562)
T ss_dssp ------------------------------------------TCCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSC
T ss_pred ------------------------------------------cCcceEEEccCCCccccc---CccCCCCceEEECCCCc
Confidence 013555555555543211 11347888888888888
Q ss_pred CCCCCCccccCccCCcEEEeeCCccccC--cCccCCCCCCccEEEcccCcccc-ccCccccccCCCcEEEccCCeeeeeC
Q 047203 385 LNGSVPKSIGNLQQLLTLVISNNNLSGE--IPQLWSNISSLYILDMSNNTLSG-EIPDSIGCLLSVRFLILCNNHISGEV 461 (698)
Q Consensus 385 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~ 461 (698)
+.+..+..+..+++|+.|++++|.+.+. .+..|..+++|++|++++|.+.+ .....+..+++|++|++++|.+++..
T Consensus 365 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 365 FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 8877777788888888888888888753 24567888889999999998886 44445777888999999999887655
Q ss_pred CCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChh-hccCCCCCEEECCCCcCccC
Q 047203 462 PPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPE-LCKLSALHILDLSHNNLSGF 533 (698)
Q Consensus 462 ~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~ 533 (698)
+..+. ++|++|++++|++. .+|..++ ++++|+.|++++|.++ .+|.. +..+++|++|++++|++...
T Consensus 445 ~~~l~--~~L~~L~L~~N~l~-~ip~~~~-~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 445 FRCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp GSSCC--TTCSEEECCSSCCC-CCCTTTT-SSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred hhhhc--CcCCEEECCCCcCc-ccChhhc-CCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 55443 68999999999888 7888777 5899999999999988 45554 88899999999999987743
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.4e-35 Score=309.73 Aligned_cols=176 Identities=23% Similarity=0.212 Sum_probs=118.4
Q ss_pred eEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccc-cCCccccCCCCCcEEECC
Q 047203 6 VELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQG-DIPDGFSSLNSLQQLDLT 84 (698)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~ 84 (698)
+.++.++++++.+|. .+ ++|++|+|++|.+++..|..|.++++|++|++++|.+.+ ..+.+|.++++|++|+++
T Consensus 13 ~~~~c~~~~l~~lp~-l~----~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LP----AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSSCCC-CC----TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcccCCC-CC----CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 346677777777775 32 778888888888887778888888888888888887763 346678888888888888
Q ss_pred CCCCCCcccchhccCCCCCCEEeCcCccCCCccch--hhccccccccCCCCcEEEccCCcccccCCcc-ccCCCCCcEEE
Q 047203 85 GNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSD--FINGLSECTNSSLLEKLELGFNQLTGDLPNS-LGYLKNLRYLE 161 (698)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~-~~~l~~L~~L~ 161 (698)
+|. .....+..|+++++|++|++++|.+++.... .+..+. +|++|++++|.+++..|.. +..+++|++|+
T Consensus 88 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 160 (455)
T 3v47_A 88 YNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT------SLEMLVLRDNNIKKIQPASFFLNMRRFHVLD 160 (455)
T ss_dssp TCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT------TCCEEECCSSBCCSCCCCGGGGGCTTCCEEE
T ss_pred CCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc------cCCEEECCCCccCccCcccccCCCCcccEEe
Confidence 887 3445567788888888888888877653221 133333 5666666666666555544 56666666666
Q ss_pred ccCceeeecCCCCCcCc--ccCCeeeccCcccCc
Q 047203 162 LWDNSFVGSIPPSIGNL--TFLKELYLSSNQMNG 193 (698)
Q Consensus 162 l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~ 193 (698)
+++|.+.+..+..+..+ .+|+.|++++|.+..
T Consensus 161 L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~ 194 (455)
T 3v47_A 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQD 194 (455)
T ss_dssp CTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTT
T ss_pred CCCCcccccChhhhhccccccccccccccCcccc
Confidence 66666665555555444 445555555555444
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7e-35 Score=310.36 Aligned_cols=387 Identities=19% Similarity=0.185 Sum_probs=272.1
Q ss_pred CcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeeccCcccCc-c-ccccCCCCCCcEEEcc
Q 047203 133 LEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNG-F-PESFGQLSAIEVLDLD 210 (698)
Q Consensus 133 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~-~~~l~~l~~L~~L~l~ 210 (698)
-+.++.+++.++ ..|. +. ++|++|++++|.+.+..|..|+++++|++|++++|.+.. + +..+..+++|++|+++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TTEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred ccccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 345667777666 3343 22 678888888888877777778888888888888887753 3 4567777777777777
Q ss_pred CCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEeccccCCccCCccccCCCCccEEEccCCc
Q 047203 211 ENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNAR 290 (698)
Q Consensus 211 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 290 (698)
+|.+.... |.++..+++|++|++++|.
T Consensus 88 ~n~l~~~~-----------------------------------------------------~~~~~~l~~L~~L~L~~n~ 114 (455)
T 3v47_A 88 YNQFLQLE-----------------------------------------------------TGAFNGLANLEVLTLTQCN 114 (455)
T ss_dssp TCTTCEEC-----------------------------------------------------TTTTTTCTTCCEEECTTSC
T ss_pred CCccCccC-----------------------------------------------------hhhccCcccCCEEeCCCCC
Confidence 77665432 3334445555555555555
Q ss_pred CcCCCCch--hhhhccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcch
Q 047203 291 ISDTVPNW--FWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDF 368 (698)
Q Consensus 291 ~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 368 (698)
+.+..+.. +.. +++|+.|++++|.+.+..+..+
T Consensus 115 l~~~~~~~~~~~~---------------------------------------------l~~L~~L~L~~n~l~~~~~~~~ 149 (455)
T 3v47_A 115 LDGAVLSGNFFKP---------------------------------------------LTSLEMLVLRDNNIKKIQPASF 149 (455)
T ss_dssp CBTHHHHSSTTTT---------------------------------------------CTTCCEEECCSSBCCSCCCCGG
T ss_pred CCccccCcccccC---------------------------------------------cccCCEEECCCCccCccCcccc
Confidence 44311110 100 2244444444444444444444
Q ss_pred hcCCCCCCEEEccCCcCCCCCCccccCc--cCCcEEEeeCCccccCcCcc--------CCCCCCccEEEcccCccccccC
Q 047203 369 GQKIPFLTDLDISFNSLNGSVPKSIGNL--QQLLTLVISNNNLSGEIPQL--------WSNISSLYILDMSNNTLSGEIP 438 (698)
Q Consensus 369 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~--------~~~l~~L~~L~L~~n~~~~~~~ 438 (698)
+..+++|++|++++|.+....+..+..+ ++|+.|++++|.+....+.. +..+++|++|++++|.+.+..+
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~ 229 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMA 229 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHH
T ss_pred cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccch
Confidence 4457777777777777776655555554 57777888877776443332 2355788888888888776665
Q ss_pred cccccc---CCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhh-hcCCCCcEEEccCCcccccCChhh
Q 047203 439 DSIGCL---LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG-ESMPSLSILRLRSNYFNGTIPPEL 514 (698)
Q Consensus 439 ~~~~~~---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~l 514 (698)
..+... ++|+.|++++|...+... ..+.+.+..+..+. ...++|+.|++++|.+.+..+..+
T Consensus 230 ~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 295 (455)
T 3v47_A 230 KRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295 (455)
T ss_dssp HHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT
T ss_pred hhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhc
Confidence 555443 678888888776542211 11111111111110 115789999999999998888899
Q ss_pred ccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhh
Q 047203 515 CKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVEL 594 (698)
Q Consensus 515 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l 594 (698)
..+++|++|++++|.+.+..|..+.++++| ++|++++|.+++..+..+
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHL--------------------------------LKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------------------CEEECCSSCCCEECGGGG
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccC--------------------------------CEEECCCCccCCcChhHh
Confidence 999999999999999998888777776666 889999999998889999
Q ss_pred hccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecCCCCCc
Q 047203 595 TRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQ 667 (698)
Q Consensus 595 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 667 (698)
.++++|++|++++|++++..|..+..+++|++|++++|.+....++.+..+++|++|+|++|++.+..|....
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence 9999999999999999988899999999999999999999987777889999999999999999999996543
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.2e-35 Score=307.76 Aligned_cols=409 Identities=25% Similarity=0.322 Sum_probs=219.2
Q ss_pred CCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCE
Q 047203 26 NFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRT 105 (698)
Q Consensus 26 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 105 (698)
+.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++++.+|+++++..|.. .++++
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~ 75 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHE 75 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCE
Confidence 457899999999998 57898899999999999999999888999999888887777766541 45677
Q ss_pred EeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeee
Q 047203 106 LKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELY 185 (698)
Q Consensus 106 L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 185 (698)
|++++|+++++.. + .++|++|++++|.+++ .|.. .++|++|++++|.+.+ ++.. .++|++|+
T Consensus 76 L~l~~~~l~~lp~-----~-----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~ 137 (454)
T 1jl5_A 76 LELNNLGLSSLPE-----L-----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLG 137 (454)
T ss_dssp EECTTSCCSCCCS-----C-----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEE
T ss_pred EEecCCccccCCC-----C-----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEE
Confidence 7777776664322 0 1256666666666654 3322 2556666666665542 1111 13555555
Q ss_pred ccCcccCccccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEeccc
Q 047203 186 LSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSC 265 (698)
Q Consensus 186 l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 265 (698)
+++|.++.+| .+.++++|++|++++|.+.+ +
T Consensus 138 L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l----------------------------------------------- 168 (454)
T 1jl5_A 138 VSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-L----------------------------------------------- 168 (454)
T ss_dssp CCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-C-----------------------------------------------
T ss_pred CcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-c-----------------------------------------------
Confidence 5555555554 35555555555555544321 0
Q ss_pred cCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCCCCC
Q 047203 266 QLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPL 345 (698)
Q Consensus 266 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 345 (698)
|..
T Consensus 169 ------p~~----------------------------------------------------------------------- 171 (454)
T 1jl5_A 169 ------PDL----------------------------------------------------------------------- 171 (454)
T ss_dssp ------CCC-----------------------------------------------------------------------
T ss_pred ------CCC-----------------------------------------------------------------------
Confidence 000
Q ss_pred cccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccE
Q 047203 346 WSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYI 425 (698)
Q Consensus 346 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 425 (698)
..+|+.|++++|.+.+ ++ . +..+++|++|++++|.+.+. +.. .++|+.|++++|.+. .+|. +..+++|++
T Consensus 172 -~~~L~~L~L~~n~l~~-l~-~-~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~ 241 (454)
T 1jl5_A 172 -PPSLEFIAAGNNQLEE-LP-E-LQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTT 241 (454)
T ss_dssp -CTTCCEEECCSSCCSS-CC-C-CTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCE
T ss_pred -cccccEEECcCCcCCc-Cc-c-ccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCC-cccc-cCCCCCCCE
Confidence 0022223333333322 22 1 23477888888888877642 221 368999999999888 5553 888999999
Q ss_pred EEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCc
Q 047203 426 LDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNY 505 (698)
Q Consensus 426 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 505 (698)
|++++|++.+. +. .+++|++|++++|.+.+ .|.. +++|++|++++|++.+ ++.. +++|+.|++++|.
T Consensus 242 L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~----~~~L~~L~l~~N~ 308 (454)
T 1jl5_A 242 IYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL----PPNLYYLNASSNE 308 (454)
T ss_dssp EECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC----CTTCCEEECCSSC
T ss_pred EECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc----CCcCCEEECcCCc
Confidence 99999988753 32 24788999999888874 3432 3788889998888874 3321 4688888888888
Q ss_pred ccccCChhhccC-CCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCC
Q 047203 506 FNGTIPPELCKL-SALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSN 584 (698)
Q Consensus 506 ~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 584 (698)
+.+. ..+ ++|++|++++|.+.+ +|.. +++|+.|++++|
T Consensus 309 l~~i-----~~~~~~L~~L~Ls~N~l~~-lp~~-----------------------------------~~~L~~L~L~~N 347 (454)
T 1jl5_A 309 IRSL-----CDLPPSLEELNVSNNKLIE-LPAL-----------------------------------PPRLERLIASFN 347 (454)
T ss_dssp CSEE-----CCCCTTCCEEECCSSCCSC-CCCC-----------------------------------CTTCCEEECCSS
T ss_pred CCcc-----cCCcCcCCEEECCCCcccc-cccc-----------------------------------CCcCCEEECCCC
Confidence 7742 223 478888888887764 3321 234477888888
Q ss_pred cCCccCChhhhccCCCCEEeCCCCcccc--cCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeee--
Q 047203 585 NLSGEMPVELTRLIHLGTLNLSQNHLVG--KIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSG-- 660 (698)
Q Consensus 585 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~-- 660 (698)
.++ .+|. .+++|++|++++|++++ .+|.+++.+ +.|...+.+|.. +++|+.|++++|++.+
T Consensus 348 ~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~ 412 (454)
T 1jl5_A 348 HLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFP 412 (454)
T ss_dssp CCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-----------------------------
T ss_pred ccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccc
Confidence 887 3454 46788888888888876 455554432 234444444442 4778888888888876
Q ss_pred cCCCCCccccCCCCc
Q 047203 661 EIPKVNQFQSLKDPS 675 (698)
Q Consensus 661 ~~p~~~~~~~~~~~~ 675 (698)
.+| .+++.+.
T Consensus 413 ~iP-----~sl~~L~ 422 (454)
T 1jl5_A 413 DIP-----ESVEDLR 422 (454)
T ss_dssp ---------------
T ss_pred cch-----hhHhhee
Confidence 444 4455554
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=299.69 Aligned_cols=344 Identities=20% Similarity=0.207 Sum_probs=281.0
Q ss_pred eEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccc
Q 047203 331 TVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLS 410 (698)
Q Consensus 331 ~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 410 (698)
.++.++..+.......+..++.|++++|.+.+..+..+ ..+++|++|++++|.+....+..|.++++|+.|++++|.+.
T Consensus 15 ~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEF-ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp EEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTT-TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHc-cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 45555555555554556688899999998886555544 45899999999999998777888889999999999999988
Q ss_pred cCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhh
Q 047203 411 GEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG 490 (698)
Q Consensus 411 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 490 (698)
...+..|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.+. .++...+
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l 172 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEAL 172 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHH
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHh
Confidence 666677889999999999999998888888889999999999999998888888999999999999999988 6776666
Q ss_pred hcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeee
Q 047203 491 ESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFY 570 (698)
Q Consensus 491 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (698)
.++++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......+|+.+.++.+.... .....+
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--------~~~~~~ 244 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA--------VPYLAV 244 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS--------CCHHHH
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc--------cCHHHh
Confidence 679999999999999987777788999999999999998887777766666677766666554332 112235
Q ss_pred ccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCe
Q 047203 571 STLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNH 650 (698)
Q Consensus 571 ~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~ 650 (698)
..+++|+.|++++|.+++..+..+.++++|++|++++|++++..+..|..+++|++|++++|.+....+..|..+++|++
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 324 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLET 324 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCE
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCE
Confidence 67889999999999999888888999999999999999999888999999999999999999999877788899999999
Q ss_pred EecccceeeecCCCCCccccCCCCccccCCCCCcC
Q 047203 651 LNLSYNNLSGEIPKVNQFQSLKDPSIYEGNLALCG 685 (698)
Q Consensus 651 L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 685 (698)
|++++|++....+..+......... +.++...|.
T Consensus 325 L~l~~N~l~c~c~~~~~~~~~~~~~-~~~~~~~C~ 358 (477)
T 2id5_A 325 LILDSNPLACDCRLLWVFRRRWRLN-FNRQQPTCA 358 (477)
T ss_dssp EECCSSCEECSGGGHHHHTTTTSSC-CTTCCCBEE
T ss_pred EEccCCCccCccchHhHHhhhhccc-cCccCceeC
Confidence 9999999998766555554444333 444444453
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5e-33 Score=292.63 Aligned_cols=413 Identities=24% Similarity=0.282 Sum_probs=218.3
Q ss_pred CCcceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCC-------------CEEEcccCcccccC
Q 047203 2 LRSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRL-------------SSLDLNTNDLQGDI 68 (698)
Q Consensus 2 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~~~~~ 68 (698)
.++||+|+++++.+..+|. .+.++++|++|++++|.+.+.+|..++.+++| ++|++++|.+.+ +
T Consensus 10 ~~~L~~L~l~~n~l~~iP~--~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPV--EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred cccchhhhcccCchhhCCh--hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 5789999999999988886 57899999999999999998999999998875 888888888774 3
Q ss_pred CccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCC
Q 047203 69 PDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLP 148 (698)
Q Consensus 69 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~ 148 (698)
|.. .++|++|++++|.+. .++. .+++|++|++++|.+++... .. ++|++|++++|.+++ .|
T Consensus 87 p~~---~~~L~~L~l~~n~l~--~lp~---~~~~L~~L~l~~n~l~~l~~-----~~-----~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLT--ELPE---LPQSLKSLLVDNNNLKALSD-----LP-----PLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp CSC---CTTCSEEECCSSCCS--SCCC---CCTTCCEEECCSSCCSCCCS-----CC-----TTCCEEECCSSCCSS-CC
T ss_pred CCC---cCCCCEEEccCCcCC--cccc---ccCCCcEEECCCCccCcccC-----CC-----CCCCEEECcCCCCCC-Cc
Confidence 431 368888888888752 2443 24788888888887775321 11 368888888888875 45
Q ss_pred ccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccCCeeeeecCchhhcCCCC
Q 047203 149 NSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSN 228 (698)
Q Consensus 149 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 228 (698)
.++.+++|++|++++|.+.+ +|..+ .+|++|++++|.++.+| .+..+++|+.|++++|.+.+. +.
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l-~~-------- 212 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKL-PD-------- 212 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSC-CC--------
T ss_pred -ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcC-CC--------
Confidence 58888888888888887763 45433 47888888888888776 577888888888888776531 11
Q ss_pred ccEEecccccccceeeeecCCCccCCcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcE
Q 047203 229 LKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDE 308 (698)
Q Consensus 229 L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 308 (698)
...+|+.|++++|.+. .+|. +..+++|+.|++++|++..... ..+++++
T Consensus 213 ------------------------~~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~ 261 (454)
T 1jl5_A 213 ------------------------LPLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPD-----LPPSLEA 261 (454)
T ss_dssp ------------------------CCTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCS-----CCTTCCE
T ss_pred ------------------------CcCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcccc-----cccccCE
Confidence 0125666666677665 4453 7777888888888877765321 1246666
Q ss_pred EEeccccccccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCC
Q 047203 309 LDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS 388 (698)
Q Consensus 309 L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 388 (698)
|++++|.+.+ ++ ..+++|+.|++++|.+.+ ++. ..++|++|++++|.+.+.
T Consensus 262 L~l~~N~l~~-l~-----------------------~~~~~L~~L~ls~N~l~~-l~~----~~~~L~~L~l~~N~l~~i 312 (454)
T 1jl5_A 262 LNVRDNYLTD-LP-----------------------ELPQSLTFLDVSENIFSG-LSE----LPPNLYYLNASSNEIRSL 312 (454)
T ss_dssp EECCSSCCSC-CC-----------------------CCCTTCCEEECCSSCCSE-ESC----CCTTCCEEECCSSCCSEE
T ss_pred EECCCCcccc-cC-----------------------cccCcCCEEECcCCccCc-ccC----cCCcCCEEECcCCcCCcc
Confidence 6666666553 12 223455666666665543 111 125666777766666531
Q ss_pred CCccccCc-cCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeee--eCCCCC
Q 047203 389 VPKSIGNL-QQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISG--EVPPSL 465 (698)
Q Consensus 389 ~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l 465 (698)
... ++|+.|++++|.+.+ +|.. +++|++|++++|.+.. ++. .+++|++|++++|.+.+ ..|..+
T Consensus 313 -----~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l 379 (454)
T 1jl5_A 313 -----CDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESV 379 (454)
T ss_dssp -----CCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred -----cCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHH
Confidence 122 467777777776663 3332 4667777777777663 333 35677777777777764 333333
Q ss_pred CCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccc--cCChhhccCCCCCEEECCCCcCccCCCccccccc
Q 047203 466 KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG--TIPPELCKLSALHILDLSHNNLSGFIPSCVGNFS 542 (698)
Q Consensus 466 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 542 (698)
. .| ..|...+.+|.. +++|+.|++++|.+.+ .+| ++++.|.+.+|.+.+..+.......
T Consensus 380 ~------~L--~~n~~~~~i~~~----~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~~~ 440 (454)
T 1jl5_A 380 E------DL--RMNSHLAEVPEL----PQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHETTD 440 (454)
T ss_dssp C------EE--ECCC----------------------------------------------------------------
T ss_pred H------hh--hhcccccccccc----cCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccCHHHhh
Confidence 2 22 234444455542 5688888888888775 333 3466777788877766555544433
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.5e-31 Score=280.81 Aligned_cols=170 Identities=28% Similarity=0.381 Sum_probs=82.7
Q ss_pred ccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEE
Q 047203 396 LQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLD 475 (698)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 475 (698)
+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 220 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence 34444444444443321 123344444444444444443222 4444555555555555442221 44555555555
Q ss_pred cCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccc
Q 047203 476 LGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYE 555 (698)
Q Consensus 476 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~ 555 (698)
+++|++.+ ++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+. ..+.+
T Consensus 294 L~~n~l~~-~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~--------------- 351 (466)
T 1o6v_A 294 LNENQLED-ISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLAN--------------- 351 (466)
T ss_dssp CCSSCCSC-CGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTT---------------
T ss_pred cCCCcccC-chh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhcc---------------
Confidence 55555552 222 2235566666666665554332 45566666666666655432 12222
Q ss_pred cceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccc
Q 047203 556 GSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVG 612 (698)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 612 (698)
+++|+.|++++|.+++..| +..+++|+.|++++|++++
T Consensus 352 -----------------l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 352 -----------------LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp -----------------CTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred -----------------CCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 2333556666666654444 5666666666666666653
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.1e-31 Score=278.87 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=47.2
Q ss_pred CCCCCcEEEccCceeeecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccCCeeee
Q 047203 153 YLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEG 216 (698)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 216 (698)
.+++++.|++.++.+. .+| .+..+++|++|++++|.++.++. +..+++|++|++++|.+..
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~ 104 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD 104 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCcccc
Confidence 3567888888888876 344 37778888888888888888766 7888888888888887653
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.98 E-value=6.4e-31 Score=281.19 Aligned_cols=231 Identities=22% Similarity=0.189 Sum_probs=146.9
Q ss_pred CCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEE
Q 047203 372 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLI 451 (698)
Q Consensus 372 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 451 (698)
+++|++|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|+.|+
T Consensus 103 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLR 182 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEE
T ss_pred CCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEe
Confidence 45555555555555544444555566666666666665555555566666666666666666554444556666666666
Q ss_pred ccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCc
Q 047203 452 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLS 531 (698)
Q Consensus 452 l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (698)
+++|.+....+..|..+++|++|++++|...+.++...+. ..+|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 183 l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 6666666555556666666777777666665555555544 446777777777666443345666777777777777766
Q ss_pred cCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCccc
Q 047203 532 GFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLV 611 (698)
Q Consensus 532 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 611 (698)
+..+..+..+++| ++|++++|.+++..+..|.++++|+.|++++|.++
T Consensus 262 ~~~~~~~~~l~~L--------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 262 TIEGSMLHELLRL--------------------------------QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp EECTTSCTTCTTC--------------------------------CEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred ccChhhccccccC--------------------------------CEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 5555555444444 66777777777666777777777777777777777
Q ss_pred ccCCccccCCCCCCeEeccCCccc
Q 047203 612 GKIPTQIGKLEWLESLDLSKNKLS 635 (698)
Q Consensus 612 ~~~~~~l~~l~sL~~L~l~~~~~~ 635 (698)
+..+..|..+++|++|++++|.+.
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCEE
T ss_pred eeCHhHcCCCcccCEEEccCCCcc
Confidence 555566667777777777777765
No 33
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=2e-31 Score=267.15 Aligned_cols=260 Identities=32% Similarity=0.569 Sum_probs=204.8
Q ss_pred cCCcEEEeeCCcccc--CcCccCCCCCCccEEEccc-CccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCE
Q 047203 397 QQLLTLVISNNNLSG--EIPQLWSNISSLYILDMSN-NTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDS 473 (698)
Q Consensus 397 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 473 (698)
.+++.|++++|.+.+ ..|..+..+++|++|++++ |.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 355666666666655 4556666666666666664 6666566666666777777777777776666666777777777
Q ss_pred EEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCC-CCCEEECCCCcCccCCCcccccccCCCcCCCCCc
Q 047203 474 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLS-ALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSV 552 (698)
Q Consensus 474 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~ 552 (698)
|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+..|..+..++ |
T Consensus 130 L~Ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L-------- 199 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L-------- 199 (313)
T ss_dssp EECCSSEEESCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C--------
T ss_pred EeCCCCccCCcCChHHhc-CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c--------
Confidence 777777776666665544 77777788877777777777777776 788888888888777776665544 4
Q ss_pred ccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCC
Q 047203 553 EYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKN 632 (698)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~ 632 (698)
+.|++++|.+++..+..+..+++|+.|++++|.+++..+. +..+++|++|++++|
T Consensus 200 ------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 200 ------------------------AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254 (313)
T ss_dssp ------------------------SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSS
T ss_pred ------------------------cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCC
Confidence 7788888888888888899999999999999999866555 788999999999999
Q ss_pred cccccCCcCccCCCCCCeEecccceeeecCCCCCccccCCCCccccCCCCCcCCCCCCCCc
Q 047203 633 KLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQFQSLKDPSIYEGNLALCGDPLPERCS 693 (698)
Q Consensus 633 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (698)
.+.+.+|..+..+++|+.|++++|++.+.+|..+.+++++.+. +.+++.+|+.|+. .|+
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~-l~~N~~lc~~p~~-~C~ 313 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA-YANNKCLCGSPLP-ACT 313 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG-TCSSSEEESTTSS-CCC
T ss_pred cccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHH-hcCCCCccCCCCC-CCC
Confidence 9999999999999999999999999999999999999999998 8899999999887 474
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.9e-30 Score=270.85 Aligned_cols=366 Identities=19% Similarity=0.150 Sum_probs=225.8
Q ss_pred CCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCC
Q 047203 23 PSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCN 102 (698)
Q Consensus 23 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 102 (698)
.+.++++|++|++++|.+++. | .+..+++|++|++++|.+.+. | ++.+++|++|++++|.+.. .+ ++.+++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN--LD--VTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC--CC--CTTCTT
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce--ee--cCCCCc
Confidence 445667777777777777653 4 477777777777777777653 3 6777777777777777422 22 677777
Q ss_pred CCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCC
Q 047203 103 LRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLK 182 (698)
Q Consensus 103 L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 182 (698)
|++|++++|++++.. + ..+++|++|++++|.+++. .++.+++|++|++++|...+.. .++.+++|+
T Consensus 108 L~~L~L~~N~l~~l~---~------~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD---V------SQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp CCEEECCSSCCSCCC---C------TTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred CCEEECCCCcCCeec---C------CCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 777777777776531 2 2333677777777777653 3667777778877777543333 366777788
Q ss_pred eeeccCcccCccccccCCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEe
Q 047203 183 ELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKI 262 (698)
Q Consensus 183 ~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 262 (698)
+|++++|.++.+| +..+++|+.|++++|.+... .+..+++|+.|++.
T Consensus 174 ~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls--------------------------- 220 (457)
T 3bz5_A 174 TLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCS--------------------------- 220 (457)
T ss_dssp EEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECC---------------------------
T ss_pred EEECCCCccceec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECc---------------------------
Confidence 8888877777765 67777788888877776543 23444444444443
Q ss_pred ccccCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccCCCCcCCCCCCeEECCCCCCcCC
Q 047203 263 RSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTVDLSSNSFEGP 342 (698)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~ 342 (698)
+|.+.. +| +..+++|+.|++++|++....+.. .++++.++++.+. ++.+++++|.+.+.
T Consensus 221 -~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~----l~~L~~L~l~~n~-------------L~~L~l~~n~~~~~ 279 (457)
T 3bz5_A 221 -SNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVST----LSKLTTLHCIQTD-------------LLEIDLTHNTQLIY 279 (457)
T ss_dssp -SSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTT----CTTCCEEECTTCC-------------CSCCCCTTCTTCCE
T ss_pred -CCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHH----CCCCCEEeccCCC-------------CCEEECCCCccCCc
Confidence 344433 22 455566666666666665543221 2455555554432 33445555544333
Q ss_pred CCC-cccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCC
Q 047203 343 LPL-WSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNIS 421 (698)
Q Consensus 343 ~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 421 (698)
.+. .+++|+.|++++|...+.++. ..+.|+.|++++ +++|+.|++++|++++. + +..++
T Consensus 280 ~~~~~l~~L~~L~Ls~n~~l~~l~~----~~~~L~~L~l~~-------------~~~L~~L~L~~N~l~~l-~--l~~l~ 339 (457)
T 3bz5_A 280 FQAEGCRKIKELDVTHNTQLYLLDC----QAAGITELDLSQ-------------NPKLVYLYLNNTELTEL-D--VSHNT 339 (457)
T ss_dssp EECTTCTTCCCCCCTTCTTCCEEEC----TTCCCSCCCCTT-------------CTTCCEEECTTCCCSCC-C--CTTCT
T ss_pred ccccccccCCEEECCCCcccceecc----CCCcceEechhh-------------cccCCEEECCCCccccc-c--cccCC
Confidence 221 235666666666665444432 234444444333 46778888888887753 2 67778
Q ss_pred CccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcE
Q 047203 422 SLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSI 498 (698)
Q Consensus 422 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 498 (698)
+|+.|++++|++.+ ++.|..|.+..|.+.+. ..+..|..+++++|.+++.+|..++....+...
T Consensus 340 ~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~~ 403 (457)
T 3bz5_A 340 KLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN 403 (457)
T ss_dssp TCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCCE
T ss_pred cCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCceee
Confidence 88888888887764 24566666777777654 244556777888888888888766543333333
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=2.9e-30 Score=268.27 Aligned_cols=285 Identities=24% Similarity=0.282 Sum_probs=216.8
Q ss_pred cCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEE
Q 047203 348 FNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILD 427 (698)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 427 (698)
++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 93 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRYLPP-HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp TTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred CCcCEEECCCCCCCcCCH-HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 355666666666553333 3334588888888888888866555677888899999998888877777788888999999
Q ss_pred cccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCccc
Q 047203 428 MSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 507 (698)
Q Consensus 428 L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 507 (698)
+++|.+... .+..+++|++|++++|.+... ...++|++|++++|.+. .++... +++|+.|++++|.+.
T Consensus 172 l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~-~~~~~~---~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 172 LSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLT 239 (390)
T ss_dssp CCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCC-EEECCC---CSSCCEEECCSSCCC
T ss_pred CCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeee-eccccc---cccccEEECCCCCCc
Confidence 999888754 356678899999988887632 34467899999999887 444432 678999999999887
Q ss_pred ccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCC
Q 047203 508 GTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLS 587 (698)
Q Consensus 508 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 587 (698)
+. +.+..+++|++|++++|.+.+..|..+..+++| ++|++++|.++
T Consensus 240 ~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------~~L~L~~n~l~ 285 (390)
T 3o6n_A 240 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL--------------------------------ERLYISNNRLV 285 (390)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC--------------------------------CEEECCSSCCC
T ss_pred cc--HHHcCCCCccEEECCCCcCCCcChhHccccccC--------------------------------CEEECCCCcCc
Confidence 54 578889999999999999887777777666666 88999999888
Q ss_pred ccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecCCCCCc
Q 047203 588 GEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQ 667 (698)
Q Consensus 588 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 667 (698)
+ ++..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+... | +..+++|+.|++++|++...-. ...
T Consensus 286 ~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~ 359 (390)
T 3o6n_A 286 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RAL 359 (390)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHH
T ss_pred c-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH-HHH
Confidence 4 4556678899999999999998 6677788899999999999999844 3 6788999999999999987532 233
Q ss_pred cccCCCCccccCCCCCcCC
Q 047203 668 FQSLKDPSIYEGNLALCGD 686 (698)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~ 686 (698)
+..++... +.+....|..
T Consensus 360 ~~~~~~~~-~~~~~~~c~~ 377 (390)
T 3o6n_A 360 FRNVARPA-VDDADQHCKI 377 (390)
T ss_dssp TTTCCTTT-BCCCCSCCCT
T ss_pred HHHHHhhc-ccccCceecc
Confidence 44444444 4455555554
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3.6e-30 Score=271.14 Aligned_cols=354 Identities=16% Similarity=0.126 Sum_probs=185.1
Q ss_pred CCcceeEEEeccccCCccCCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccccccccCCCCcCCCCCCeE
Q 047203 253 PPFKLTFIKIRSCQLGPKFPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSNELSGRIPNSLGFRFPGTV 332 (698)
Q Consensus 253 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~l~~l 332 (698)
.+++++.|+++++.+... | .+..+++|++|++++|.+.+.. +. ..++|++|++++|.+++. + ....+.|+.+
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~---~~-~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD---LS-QNTNLTYLACDSNKLTNL-D-VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC---CT-TCTTCSEEECCSSCCSCC-C-CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc---cc-cCCCCCEEECcCCCCcee-e-cCCCCcCCEE
Confidence 345566666666665543 3 4566666666666666655532 22 225566666666665543 1 2234555555
Q ss_pred ECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccC
Q 047203 333 DLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGE 412 (698)
Q Consensus 333 ~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 412 (698)
++++|.+.+.....+++|+.|++++|.+.+. + ...+++|++|++++|+..+.. .+..+++|+.|++++|.+.+
T Consensus 112 ~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l-~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 112 NCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-D---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp ECCSSCCSCCCCTTCTTCCEEECTTSCCSCC-C---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred ECCCCcCCeecCCCCCcCCEEECCCCcccee-c---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 5555555543222344555555555555431 1 123555555555555332222 24445555555555555543
Q ss_pred cCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhc
Q 047203 413 IPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGES 492 (698)
Q Consensus 413 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~ 492 (698)
++ +..+++|++|++++|.+.+. .+..+++|++|++++|.+++ .| +..+++|++|++++|++.+ ++.. .
T Consensus 185 l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~~~---~ 252 (457)
T 3bz5_A 185 LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LDVS---T 252 (457)
T ss_dssp CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CCCT---T
T ss_pred ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cCHH---H
Confidence 22 44455555555555555433 24445555555555555543 22 4455555555555555542 2211 1
Q ss_pred CCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeecc
Q 047203 493 MPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYST 572 (698)
Q Consensus 493 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (698)
+++|+.|+++++ +|++|++++|.+.+.+| ...+++|+.++++.+...+.++..........+..
T Consensus 253 l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 253 LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 333333333322 22233333333333222 22334444444444433333322212222223455
Q ss_pred ccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEe
Q 047203 573 LYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLN 652 (698)
Q Consensus 573 ~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 652 (698)
+++|++|++++|.+++. + +..+++|+.|++++|++++ +++|+.|++++|.+.+. .++.+|+.++
T Consensus 317 ~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~ 380 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKET 380 (457)
T ss_dssp CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBC
T ss_pred cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccc
Confidence 67788888888888763 3 7788888888888888874 24566667777777644 3456788899
Q ss_pred cccceeeecCCCC
Q 047203 653 LSYNNLSGEIPKV 665 (698)
Q Consensus 653 l~~n~~~~~~p~~ 665 (698)
+++|++++.+|..
T Consensus 381 l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 381 LTNNSLTIAVSPD 393 (457)
T ss_dssp CBTTBEEEECCTT
T ss_pred cccCcEEEEcChh
Confidence 9999999999864
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=1.3e-29 Score=277.81 Aligned_cols=285 Identities=24% Similarity=0.295 Sum_probs=223.8
Q ss_pred cCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEE
Q 047203 348 FNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILD 427 (698)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 427 (698)
++|+.|++++|.+.+ .+...+..+++|++|++++|.+....+..|.++++|+.|++++|.+.+..+..|..+++|++|+
T Consensus 99 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 99 HTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp TTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 356666666666654 3333344588899999999988876666678889999999999998877788888899999999
Q ss_pred cccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCccc
Q 047203 428 MSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 507 (698)
Q Consensus 428 L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 507 (698)
+++|.+.+. .+..+++|+.|++++|.+.+ +...++|++|++++|.+. .++... .++|+.|++++|.+.
T Consensus 178 L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~~---~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 178 LSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPV---NVELTILKLQHNNLT 245 (597)
T ss_dssp CTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC-EEECSC---CSCCCEEECCSSCCC
T ss_pred CcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc-cccccc---CCCCCEEECCCCCCC
Confidence 999988764 35667889999999988763 334567999999999887 444332 568999999999987
Q ss_pred ccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCC
Q 047203 508 GTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLS 587 (698)
Q Consensus 508 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 587 (698)
+ +..+..+++|++|++++|.+.+..|..+..+++| +.|++++|.++
T Consensus 246 ~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------~~L~Ls~N~l~ 291 (597)
T 3oja_B 246 D--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL--------------------------------ERLYISNNRLV 291 (597)
T ss_dssp C--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC--------------------------------CEEECTTSCCC
T ss_pred C--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCC--------------------------------CEEECCCCCCC
Confidence 5 3678899999999999999988888777776666 88999999998
Q ss_pred ccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecCCCCCc
Q 047203 588 GEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQ 667 (698)
Q Consensus 588 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 667 (698)
+ +|..+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+... | +..+++|+.|+|++|++.+..+ .+.
T Consensus 292 ~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~ 365 (597)
T 3oja_B 292 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RAL 365 (597)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHH
T ss_pred C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH-HHH
Confidence 5 4666777899999999999998 6788888899999999999999854 3 6778999999999999997642 233
Q ss_pred cccCCCCccccCCCCCcCC
Q 047203 668 FQSLKDPSIYEGNLALCGD 686 (698)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~ 686 (698)
+..+.... +.++...|+.
T Consensus 366 ~~~~~~~~-~~~~~~~C~~ 383 (597)
T 3oja_B 366 FRNVARPA-VDDADQHCKI 383 (597)
T ss_dssp TTTCCTTT-BCCCCCCCCT
T ss_pred HHHHhhhc-cccccccCCc
Confidence 44455444 5566666765
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=8.7e-29 Score=253.12 Aligned_cols=258 Identities=25% Similarity=0.371 Sum_probs=187.9
Q ss_pred CccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEc
Q 047203 349 NVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDM 428 (698)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 428 (698)
+|++|++++|.+.+ ++ . +..+++|++|++++|.+..... +..+++|+.|++++|...... ..+..+++|++|++
T Consensus 89 ~L~~L~L~~n~i~~-~~-~-~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l 162 (347)
T 4fmz_A 89 KLTNLYIGTNKITD-IS-A-LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTV 162 (347)
T ss_dssp TCCEEECCSSCCCC-CG-G-GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEEC
T ss_pred cCCEEEccCCcccC-ch-H-HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEe
Confidence 45555555555442 22 2 3457888888888888765332 677888888888888655333 33777888888888
Q ss_pred ccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccc
Q 047203 429 SNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNG 508 (698)
Q Consensus 429 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 508 (698)
++|.+....+ +..+++|++|++++|.+....+ +..+++|+++++++|.+.+ ++. +..+++|+.|++++|.+.+
T Consensus 163 ~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp CSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCC
T ss_pred cCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC-Cch--hhcCCcCCEEEccCCccCC
Confidence 8888765433 6778888888888888764322 7778888888888888773 333 3448888888888888874
Q ss_pred cCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCc
Q 047203 509 TIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSG 588 (698)
Q Consensus 509 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 588 (698)
..+ +..+++|++|++++|.+.+. ..+. .+++|+.|++++|.+++
T Consensus 236 ~~~--~~~l~~L~~L~l~~n~l~~~--~~~~--------------------------------~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 236 LSP--LANLSQLTWLEIGTNQISDI--NAVK--------------------------------DLTKLKMLNVGSNQISD 279 (347)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCC--GGGT--------------------------------TCTTCCEEECCSSCCCC
T ss_pred Ccc--hhcCCCCCEEECCCCccCCC--hhHh--------------------------------cCCCcCEEEccCCccCC
Confidence 432 78888888888888877642 2232 34555889999998875
Q ss_pred cCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceee
Q 047203 589 EMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 659 (698)
Q Consensus 589 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 659 (698)
. ..+..+++|++|++++|.+++..++.+..+++|++|++++|.+....| ++.+++|++|++++|+++
T Consensus 280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 280 I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 4 468888999999999999988888888889999999999999886655 788999999999999875
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=9.7e-30 Score=254.85 Aligned_cols=255 Identities=29% Similarity=0.447 Sum_probs=212.8
Q ss_pred CCCCEEEccCCcCCC--CCCccccCccCCcEEEeeC-CccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcE
Q 047203 373 PFLTDLDISFNSLNG--SVPKSIGNLQQLLTLVISN-NNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRF 449 (698)
Q Consensus 373 ~~L~~L~L~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 449 (698)
.++++|++++|.+.+ ..+..+.++++|+.|++++ |.+.+..|..|..+++|++|++++|.+.+..+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467778888887776 5667778888888888884 7777777777888888888888888888777778888888888
Q ss_pred EEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCC-CCcEEEccCCcccccCChhhccCCCCCEEECCCC
Q 047203 450 LILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMP-SLSILRLRSNYFNGTIPPELCKLSALHILDLSHN 528 (698)
Q Consensus 450 L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 528 (698)
|++++|.+.+..|..+..+++|++|++++|++.+.+|..+.. ++ +|+.|++++|.+.+..|..+..++ |++|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGC-CCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhh-hhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 888888888777888888888888888888888778877766 55 888999998888888888888887 999999999
Q ss_pred cCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCC
Q 047203 529 NLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQN 608 (698)
Q Consensus 529 ~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 608 (698)
.+.+..|..+..+++| +.|++++|.+++..+. +..+++|++|++++|
T Consensus 208 ~l~~~~~~~~~~l~~L--------------------------------~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNT--------------------------------QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNN 254 (313)
T ss_dssp EEEECCGGGCCTTSCC--------------------------------SEEECCSSEECCBGGG-CCCCTTCCEEECCSS
T ss_pred cccCcCCHHHhcCCCC--------------------------------CEEECCCCceeeecCc-ccccCCCCEEECcCC
Confidence 8887777777666666 7888999988866554 788899999999999
Q ss_pred cccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecCC
Q 047203 609 HLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIP 663 (698)
Q Consensus 609 ~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 663 (698)
.+++.+|..+..+++|++|++++|.+.+.+|+. ..+++|+.+++++|+.....|
T Consensus 255 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred cccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 999899999999999999999999999888886 889999999999999665444
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=3.1e-29 Score=260.53 Aligned_cols=309 Identities=18% Similarity=0.195 Sum_probs=221.8
Q ss_pred cCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEE
Q 047203 348 FNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILD 427 (698)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 427 (698)
.+++.++++++.+. .++..++..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..|..+++|++|+
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 46677777777665 45555445577777777777777665555677777777777777777766666677777777777
Q ss_pred cccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCccc
Q 047203 428 MSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 507 (698)
Q Consensus 428 L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 507 (698)
+++|.+....+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++. .++. ..+++|+.|++++|.+.
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~---~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL---SLIPSLFHANVSYNLLS 199 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCCG---GGCTTCSEEECCSSCCS
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-cccc---ccccccceeeccccccc
Confidence 7777777555555566777777777777776655666777777777777777766 3332 22667777777777665
Q ss_pred ccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCC
Q 047203 508 GTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLS 587 (698)
Q Consensus 508 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 587 (698)
+. ...++|++|++++|.+....... .++|+.+.++.....+ ...+..+++|++|++++|.++
T Consensus 200 ~~-----~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~----------~~~l~~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 200 TL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD----------TAWLLNYPGLVEVDLSYNELE 261 (390)
T ss_dssp EE-----ECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSCCCC----------CGGGGGCTTCSEEECCSSCCC
T ss_pred cc-----CCCCcceEEECCCCeeeeccccc---cccccEEECCCCCCcc----------cHHHcCCCCccEEECCCCcCC
Confidence 32 33456777777777766543222 2455555555554332 124567788899999999999
Q ss_pred ccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecCCCCCc
Q 047203 588 GEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQ 667 (698)
Q Consensus 588 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 667 (698)
+..+..+..+++|++|++++|++++ ++..+..+++|++|++++|.+. .+|..+..+++|++|++++|++... | .+.
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-~~~ 337 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LST 337 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCT
T ss_pred CcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C-chh
Confidence 8889999999999999999999984 5666778999999999999998 6677788999999999999998754 4 566
Q ss_pred cccCCCCccccCCCCCc
Q 047203 668 FQSLKDPSIYEGNLALC 684 (698)
Q Consensus 668 ~~~~~~~~~~~~~~~~~ 684 (698)
+.+++.+. ..++++.|
T Consensus 338 ~~~L~~L~-l~~N~~~~ 353 (390)
T 3o6n_A 338 HHTLKNLT-LSHNDWDC 353 (390)
T ss_dssp TCCCSEEE-CCSSCEEH
T ss_pred hccCCEEE-cCCCCccc
Confidence 77888887 55555554
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.3e-28 Score=247.81 Aligned_cols=287 Identities=19% Similarity=0.200 Sum_probs=212.6
Q ss_pred CeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCcc
Q 047203 330 GTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNL 409 (698)
Q Consensus 330 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 409 (698)
+.++++++.+.......++.++.|++++|.+.+..+.. +..+++|++|++++|.+....+..+..+++|+.|++++|.+
T Consensus 34 ~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 34 RVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112 (330)
T ss_dssp TEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred eEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhh-hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC
Confidence 34444444444333334557788888888877443333 34588888888888888877677888888888888888888
Q ss_pred ccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeee--eCCCCCCCCCCCCEEEcCCCcCcccCch
Q 047203 410 SGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISG--EVPPSLKNCSMMDSLDLGDNQLSGNIPA 487 (698)
Q Consensus 410 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~n~~~~~~~~ 487 (698)
.. +|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+. .+|.
T Consensus 113 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~ 188 (330)
T 1xku_A 113 KE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188 (330)
T ss_dssp SB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCS
T ss_pred Cc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCc
Confidence 73 343332 688888888888887766677888888888888888753 45667788888888888888887 5665
Q ss_pred hhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccce
Q 047203 488 WIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQY 567 (698)
Q Consensus 488 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 567 (698)
.+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 189 ~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L----------------------- 242 (330)
T 1xku_A 189 GL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL----------------------- 242 (330)
T ss_dssp SC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC-----------------------
T ss_pred cc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC-----------------------
Confidence 44 3688888888888887777888888888888888888877666566555555
Q ss_pred eeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccC------CCCCCeEeccCCcccc--cCC
Q 047203 568 VFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGK------LEWLESLDLSKNKLSG--SIP 639 (698)
Q Consensus 568 ~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~------l~sL~~L~l~~~~~~~--~~~ 639 (698)
++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .++|+.|++++|.+.. ..|
T Consensus 243 ---------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~ 312 (330)
T 1xku_A 243 ---------RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP 312 (330)
T ss_dssp ---------CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred ---------CEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence 78888888888 67777888888888888888888666555543 3778888888888763 566
Q ss_pred cCccCCCCCCeEecccce
Q 047203 640 PSMVSLTFMNHLNLSYNN 657 (698)
Q Consensus 640 ~~l~~l~~L~~L~l~~n~ 657 (698)
..+..+.+++.+++++|+
T Consensus 313 ~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 313 STFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGGTTCCCGGGEEC----
T ss_pred cccccccceeEEEecccC
Confidence 778888888888888874
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=1.8e-28 Score=250.67 Aligned_cols=275 Identities=22% Similarity=0.354 Sum_probs=218.7
Q ss_pred ccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEE
Q 047203 347 SFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYIL 426 (698)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 426 (698)
+++|++|++++|.+.+. +. +..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 65 ~~~L~~L~l~~n~i~~~-~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L 137 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDI-SP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSL 137 (347)
T ss_dssp CTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEE
T ss_pred cCCccEEEccCCccccc-hh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEE
Confidence 45777777777777633 32 45688999999999988753 357888899999999988875433 7788899999
Q ss_pred EcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcc
Q 047203 427 DMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYF 506 (698)
Q Consensus 427 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 506 (698)
++++|...... ..+..+++|++|++++|.+....+ +..+++|++|++++|.+. .++. +..+++|+.+++++|.+
T Consensus 138 ~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 138 NLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp ECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCC
T ss_pred ECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCC
Confidence 99998655433 347888899999999988864332 778888999999999887 4444 34588999999999888
Q ss_pred cccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcC
Q 047203 507 NGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNL 586 (698)
Q Consensus 507 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 586 (698)
.+..+ +..+++|++|++++|.+.+..+ +. .+++|++|++++|.+
T Consensus 212 ~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~--------------------------------~l~~L~~L~l~~n~l 255 (347)
T 4fmz_A 212 TDITP--VANMTRLNSLKIGNNKITDLSP--LA--------------------------------NLSQLTWLEIGTNQI 255 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GT--------------------------------TCTTCCEEECCSSCC
T ss_pred CCCch--hhcCCcCCEEEccCCccCCCcc--hh--------------------------------cCCCCCEEECCCCcc
Confidence 75433 7888899999999988775433 33 345559999999999
Q ss_pred CccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecCCCCC
Q 047203 587 SGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVN 666 (698)
Q Consensus 587 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~ 666 (698)
++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+....|+.+..+++|++|++++|++.+..| .+
T Consensus 256 ~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~ 330 (347)
T 4fmz_A 256 SDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LA 330 (347)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GG
T ss_pred CCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hh
Confidence 854 5689999999999999999864 568899999999999999998899999999999999999999988777 67
Q ss_pred ccccCCCCc
Q 047203 667 QFQSLKDPS 675 (698)
Q Consensus 667 ~~~~~~~~~ 675 (698)
.+.+++.+.
T Consensus 331 ~l~~L~~L~ 339 (347)
T 4fmz_A 331 SLSKMDSAD 339 (347)
T ss_dssp GCTTCSEES
T ss_pred hhhccceee
Confidence 777888777
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.4e-28 Score=247.72 Aligned_cols=286 Identities=21% Similarity=0.243 Sum_probs=214.6
Q ss_pred CeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCcc
Q 047203 330 GTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNL 409 (698)
Q Consensus 330 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 409 (698)
+.++++++.+.......+++++.|++++|.+.+..+..+ ..+++|++|++++|.+....+..+.++++|+.|++++|.+
T Consensus 36 ~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 36 RVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDF-KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114 (332)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred CEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHh-hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence 344444444443333335578888888888774444444 4588888888888888877677788888888888888888
Q ss_pred ccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeee--eCCCCCCCCCCCCEEEcCCCcCcccCch
Q 047203 410 SGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISG--EVPPSLKNCSMMDSLDLGDNQLSGNIPA 487 (698)
Q Consensus 410 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~n~~~~~~~~ 487 (698)
.. +|..+. ++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|++. .+|.
T Consensus 115 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~ 189 (332)
T 2ft3_A 115 VE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPK 189 (332)
T ss_dssp CS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCS
T ss_pred Cc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCc
Confidence 73 443333 788888888888887766678888888888888888753 456667666 8888888888887 5665
Q ss_pred hhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccce
Q 047203 488 WIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQY 567 (698)
Q Consensus 488 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 567 (698)
.+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 190 ~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L----------------------- 243 (332)
T 2ft3_A 190 DL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL----------------------- 243 (332)
T ss_dssp SS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC-----------------------
T ss_pred cc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC-----------------------
Confidence 54 4688888888888887777788888888888888888887766666655555
Q ss_pred eeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccC------CCCCCeEeccCCccc--ccCC
Q 047203 568 VFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGK------LEWLESLDLSKNKLS--GSIP 639 (698)
Q Consensus 568 ~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~------l~sL~~L~l~~~~~~--~~~~ 639 (698)
++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .++|+.|++++|.+. ...|
T Consensus 244 ---------~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 244 ---------RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp ---------CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred ---------CEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 88999999888 67777888999999999999988766666654 367889999999887 5677
Q ss_pred cCccCCCCCCeEecccce
Q 047203 640 PSMVSLTFMNHLNLSYNN 657 (698)
Q Consensus 640 ~~l~~l~~L~~L~l~~n~ 657 (698)
..+..+++|+.+++++|+
T Consensus 314 ~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGTTBCCSTTEEC----
T ss_pred ccccccchhhhhhccccc
Confidence 888889999999998885
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.8e-28 Score=268.72 Aligned_cols=309 Identities=19% Similarity=0.199 Sum_probs=220.1
Q ss_pred cCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEE
Q 047203 348 FNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILD 427 (698)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 427 (698)
.+++.++++++.+. .+|..++..+++|++|++++|.+.+..+..|..+++|+.|++++|.+.+..+..|..+++|++|+
T Consensus 51 ~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 51 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp CCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 35666666666665 44555445577777777777777665555667777777777777777766666667777777777
Q ss_pred cccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCccc
Q 047203 428 MSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 507 (698)
Q Consensus 428 L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 507 (698)
+++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+ ++. ..+++|+.|++++|.+.
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~---~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL---SLIPSLFHANVSYNLLS 205 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCG---GGCTTCSEEECCSSCCS
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cCh---hhhhhhhhhhcccCccc
Confidence 77777765555556667777777777777766666667777777777777777663 332 22667777777777665
Q ss_pred ccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCC
Q 047203 508 GTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLS 587 (698)
Q Consensus 508 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 587 (698)
+ +...++|++|++++|.+....+... ++|+.+.++.+...+ ...+..+++|+.|++++|.++
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~----------~~~l~~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTD----------TAWLLNYPGLVEVDLSYNELE 267 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCEEECSCC---SCCCEEECCSSCCCC----------CGGGGGCTTCSEEECCSSCCC
T ss_pred c-----ccCCchhheeeccCCcccccccccC---CCCCEEECCCCCCCC----------ChhhccCCCCCEEECCCCccC
Confidence 3 2344567777777776664433332 345555555544332 134566788899999999999
Q ss_pred ccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecCCCCCc
Q 047203 588 GEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQ 667 (698)
Q Consensus 588 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 667 (698)
+..|..+..+++|+.|+|++|.+++ +|..+..+++|++|++++|.+. .+|..+..+++|+.|+|++|++.+. | .+.
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-~~~ 343 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-LST 343 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-CCT
T ss_pred CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-hhh
Confidence 9999999999999999999999985 5667778999999999999999 6788889999999999999999764 4 455
Q ss_pred cccCCCCccccCCCCCc
Q 047203 668 FQSLKDPSIYEGNLALC 684 (698)
Q Consensus 668 ~~~~~~~~~~~~~~~~~ 684 (698)
+.+|+.+. ..+|++.|
T Consensus 344 ~~~L~~L~-l~~N~~~~ 359 (597)
T 3oja_B 344 HHTLKNLT-LSHNDWDC 359 (597)
T ss_dssp TCCCSEEE-CCSSCEEH
T ss_pred cCCCCEEE-eeCCCCCC
Confidence 66888777 55555554
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.95 E-value=1.1e-26 Score=235.38 Aligned_cols=269 Identities=22% Similarity=0.295 Sum_probs=215.3
Q ss_pred CccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEc
Q 047203 349 NVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDM 428 (698)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 428 (698)
.++.++++++.+. .+|..+ .+.++.|++++|.+++.....+.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 7888999888877 555544 468899999999988776667888999999999999988777888889999999999
Q ss_pred ccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcc-cCchhhhhcCCCCcEEEccCCccc
Q 047203 429 SNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG-NIPAWIGESMPSLSILRLRSNYFN 507 (698)
Q Consensus 429 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~l~~~~~~ 507 (698)
++|.+... +..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ......+..+++|+.|++++|.+.
T Consensus 108 s~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKEL-PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSBC-CSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCcc-Chhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99988743 33332 789999999998886666668888999999999988753 133334455889999999999887
Q ss_pred ccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCC
Q 047203 508 GTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLS 587 (698)
Q Consensus 508 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 587 (698)
. +|..+. ++|++|++++|.+.+..|..+..+++| ++|++++|.++
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------~~L~Ls~n~l~ 229 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL--------------------------------AKLGLSFNSIS 229 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC--------------------------------CEEECCSSCCC
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC--------------------------------CEEECCCCcCc
Confidence 3 444433 789999999998887777666666555 88999999998
Q ss_pred ccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccC------CCCCCeEecccceeee
Q 047203 588 GEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVS------LTFMNHLNLSYNNLSG 660 (698)
Q Consensus 588 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~------l~~L~~L~l~~n~~~~ 660 (698)
+..+..+..+++|++|++++|+++ .+|.++..+++|++|++++|.+....+..|.. .++|+.+++++|++..
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred eeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 888778899999999999999988 77888888999999999999998777666653 3788999999998864
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.3e-30 Score=277.97 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=33.0
Q ss_pred CCCCCEEEccCCcCCCCCCcccc-----CccCCcEEEeeCCccccC----cCccCCCCCCccEEEcccCcccc
Q 047203 372 IPFLTDLDISFNSLNGSVPKSIG-----NLQQLLTLVISNNNLSGE----IPQLWSNISSLYILDMSNNTLSG 435 (698)
Q Consensus 372 ~~~L~~L~L~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~~~~ 435 (698)
+++|++|++++|.+.+.....+. ..++|+.|++++|.+... ++..+..+++|++|++++|.+.+
T Consensus 169 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 169 KPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp CTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred CCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 56677777776665432222221 134566666666655532 23334445555555555555543
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.1e-30 Score=278.52 Aligned_cols=283 Identities=18% Similarity=0.155 Sum_probs=164.2
Q ss_pred CccEEEcccCcccccCCcchh----cCCCCCCEEEccCCcCCCCC----CccccCccCCcEEEeeCCccccCcCccCC--
Q 047203 349 NVTKLYLNNNSFSGPIPRDFG----QKIPFLTDLDISFNSLNGSV----PKSIGNLQQLLTLVISNNNLSGEIPQLWS-- 418 (698)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-- 418 (698)
+|+.|++++|.+.+..+..+. ...++|++|++++|.++... ...+..+++|+.|++++|.+....+..+.
T Consensus 114 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 193 (461)
T 1z7x_W 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG 193 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHH
Confidence 455555555555433332222 22456888888888776532 33445567788888887776543222222
Q ss_pred ---CCCCccEEEcccCccccc----cCccccccCCCcEEEccCCeeeeeC-----CCCCCCCCCCCEEEcCCCcCccc--
Q 047203 419 ---NISSLYILDMSNNTLSGE----IPDSIGCLLSVRFLILCNNHISGEV-----PPSLKNCSMMDSLDLGDNQLSGN-- 484 (698)
Q Consensus 419 ---~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~L~~n~~~~~-- 484 (698)
..++|++|++++|.+... .+..+..+++|++|++++|.++... +..+..+++|++|++++|.+++.
T Consensus 194 l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~ 273 (461)
T 1z7x_W 194 LKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC 273 (461)
T ss_dssp HHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred HhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH
Confidence 245777778877777653 2444556677777777777765322 12223467777777777777642
Q ss_pred --CchhhhhcCCCCcEEEccCCcccccCChhhcc-----CCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccc
Q 047203 485 --IPAWIGESMPSLSILRLRSNYFNGTIPPELCK-----LSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGS 557 (698)
Q Consensus 485 --~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~ 557 (698)
++..+. .+++|+.|++++|.+.+..+..+.. .++|++|++++|.+++.....+.
T Consensus 274 ~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~------------------ 334 (461)
T 1z7x_W 274 GDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS------------------ 334 (461)
T ss_dssp HHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH------------------
T ss_pred HHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH------------------
Confidence 333332 3677777777777765443333322 25777777777776543111110
Q ss_pred eEEeecccceeeeccccccCeEEcCCCcCCccCChhhhc-----cCCCCEEeCCCCcccc----cCCccccCCCCCCeEe
Q 047203 558 LQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTR-----LIHLGTLNLSQNHLVG----KIPTQIGKLEWLESLD 628 (698)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~-----l~~L~~L~l~~n~~~~----~~~~~l~~l~sL~~L~ 628 (698)
..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .++..+..+++|++|+
T Consensus 335 ----------~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~ 404 (461)
T 1z7x_W 335 ----------SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELD 404 (461)
T ss_dssp ----------HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEE
T ss_pred ----------HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEE
Confidence 01122344477777777776554444432 5677777777777775 5566667777777777
Q ss_pred ccCCcccccCCcCcc-----CCCCCCeEecccceeee
Q 047203 629 LSKNKLSGSIPPSMV-----SLTFMNHLNLSYNNLSG 660 (698)
Q Consensus 629 l~~~~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~ 660 (698)
+++|.+.......+. ..+.|+.|++.++....
T Consensus 405 l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 405 LSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 777777644222221 23456666666665554
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=1e-26 Score=235.72 Aligned_cols=267 Identities=22% Similarity=0.308 Sum_probs=216.4
Q ss_pred CccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEc
Q 047203 349 NVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDM 428 (698)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 428 (698)
.++.++++++.+. .+|..+ .+.++.|++++|.+....+..+.++++|+.|++++|.+.+..+..|..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 6888999988887 566554 468899999999888766777888899999999999888777888888999999999
Q ss_pred ccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcc-cCchhhhhcCCCCcEEEccCCccc
Q 047203 429 SNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSG-NIPAWIGESMPSLSILRLRSNYFN 507 (698)
Q Consensus 429 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~l~~~~~~ 507 (698)
++|.+... +..+. ++|++|++++|.+....+..+..+++|++|++++|.+.+ .+....+..+ +|+.|++++|.+.
T Consensus 110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99988743 33333 789999999998886555668888999999999998852 1333333335 8889999998887
Q ss_pred ccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCC
Q 047203 508 GTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLS 587 (698)
Q Consensus 508 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 587 (698)
+ +|..+. ++|++|++++|.+.+..+..+..+++| +.|++++|.++
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L--------------------------------~~L~L~~N~l~ 230 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKL--------------------------------YRLGLGHNQIR 230 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTC--------------------------------SCCBCCSSCCC
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCC--------------------------------CEEECCCCcCC
Confidence 4 444433 788889999998887776666666666 88999999999
Q ss_pred ccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccC------CCCCCeEecccceee
Q 047203 588 GEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVS------LTFMNHLNLSYNNLS 659 (698)
Q Consensus 588 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~------l~~L~~L~l~~n~~~ 659 (698)
+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+....+..+.. .++|+.|++++|++.
T Consensus 231 ~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 231 MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred cCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 888888999999999999999998 78888999999999999999999877777765 378999999999987
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=6e-26 Score=227.38 Aligned_cols=234 Identities=21% Similarity=0.241 Sum_probs=144.6
Q ss_pred cCCcEEEeeCCccccCcCccCCCCCCccEEEcccCcccccc--CccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEE
Q 047203 397 QQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEI--PDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSL 474 (698)
Q Consensus 397 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 474 (698)
++|+.|++++|.+....+..|..+++|++|++++|.+.... +..+..+++|++|++++|.+. ..+..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 44555555555555333334555555555555555554221 233444556666666666555 333445556666666
Q ss_pred EcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCcc-CCCcccccccCCCcCCCCCcc
Q 047203 475 DLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSG-FIPSCVGNFSRMKIEPPDSVE 553 (698)
Q Consensus 475 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~~~~~~~~ 553 (698)
++++|++.+..+...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L--------- 177 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL--------- 177 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC---------
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC---------
Confidence 6666666532221333446666666666666665666666667777777777776654 344444444444
Q ss_pred cccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCc
Q 047203 554 YEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNK 633 (698)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~ 633 (698)
++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.
T Consensus 178 -----------------------~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 178 -----------------------TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp -----------------------CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred -----------------------CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 667777777776667777777777777777777776666667777777777777777
Q ss_pred ccccCCcCccCCC-CCCeEecccceeeecCC
Q 047203 634 LSGSIPPSMVSLT-FMNHLNLSYNNLSGEIP 663 (698)
Q Consensus 634 ~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p 663 (698)
+.+..|..+..++ +|+.|++++|++....+
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 7777777777773 77777777777776544
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=6e-27 Score=239.64 Aligned_cols=259 Identities=19% Similarity=0.194 Sum_probs=142.8
Q ss_pred CCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEc
Q 047203 373 PFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLIL 452 (698)
Q Consensus 373 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 452 (698)
++|++|++++|.+.......+.++++|+.|++++|.+.+..+..|.++++|++|++++|.+....+..+..+++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 34555555555554433334555555555555555555444445555555555555555555433333455555555555
Q ss_pred cCCeeeeeCC-CCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCc
Q 047203 453 CNNHISGEVP-PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLS 531 (698)
Q Consensus 453 ~~~~~~~~~~-~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (698)
++|.+..... ..+..+++|++|++++|...+.++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 5555542222 245555555555555553222333333333555556666555555555555555556666666555543
Q ss_pred cCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhh---hccCCCCEEeCCCC
Q 047203 532 GFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVEL---TRLIHLGTLNLSQN 608 (698)
Q Consensus 532 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n 608 (698)
...+..+ ..+++|+.|++++|.+++..+..+ ...+.++.++++++
T Consensus 212 ~~~~~~~--------------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 212 LLLEIFV--------------------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp THHHHHH--------------------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESC
T ss_pred cchhhhh--------------------------------hhcccccEEECCCCccccccccccccccccchhhccccccc
Confidence 2211111 122333556666665554333222 23456777777777
Q ss_pred cccc----cCCccccCCCCCCeEeccCCcccccCCcC-ccCCCCCCeEecccceeeecCCC
Q 047203 609 HLVG----KIPTQIGKLEWLESLDLSKNKLSGSIPPS-MVSLTFMNHLNLSYNNLSGEIPK 664 (698)
Q Consensus 609 ~~~~----~~~~~l~~l~sL~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~p~ 664 (698)
.+.+ .+|+.+..+++|++|++++|.+. .+|.. |..+++|++|++++|++.+..|.
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 7664 35667778888888888888888 44444 57888888888888888877663
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=2.3e-28 Score=269.30 Aligned_cols=133 Identities=15% Similarity=0.115 Sum_probs=67.9
Q ss_pred CCCCCcEEECCCCCCCCcccchhccC-CC-CCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccC----
Q 047203 74 SLNSLQQLDLTGNSFLGGRLSRNLGK-LC-NLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDL---- 147 (698)
Q Consensus 74 ~l~~L~~L~l~~~~~~~~~~~~~~~~-l~-~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~---- 147 (698)
.+++|++|++++|. ........+.. ++ +|++|++++|.. .....+..+. .++++|++|++++|.+++..
T Consensus 110 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~--~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~l 184 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSG--FTTDGLLSIV--THCRKIKTLLMEESSFSEKDGKWL 184 (592)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEE--EEHHHHHHHH--HHCTTCSEEECTTCEEECCCSHHH
T ss_pred hCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCC--cCHHHHHHHH--hhCCCCCEEECccccccCcchhHH
Confidence 45556666665554 22222333333 22 266666655541 1111111110 12335666666666554332
Q ss_pred CccccCCCCCcEEEccCceee----ecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccC
Q 047203 148 PNSLGYLKNLRYLELWDNSFV----GSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDE 211 (698)
Q Consensus 148 ~~~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 211 (698)
+.....+++|++|+++++.+. ..++..+..+++|++|++++|.+..++..+..+++|++|+++.
T Consensus 185 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 185 HELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECB
T ss_pred HHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccc
Confidence 223345566677776666654 1222334456677777777776666666666777777777764
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=1e-25 Score=225.69 Aligned_cols=277 Identities=21% Similarity=0.263 Sum_probs=208.8
Q ss_pred cEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccC--cCccCCCCCCccEEEc
Q 047203 351 TKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGE--IPQLWSNISSLYILDM 428 (698)
Q Consensus 351 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L 428 (698)
+.++++++.++ .+|..+ .+++++|++++|.+.......+.++++|+.|++++|.+... .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 45566665555 444433 45788888888887765555677788888888888877632 2445566788888888
Q ss_pred ccCccccccCccccccCCCcEEEccCCeeeeeCC-CCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCccc
Q 047203 429 SNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVP-PSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 507 (698)
Q Consensus 429 ~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 507 (698)
++|.+.. .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-IFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT-TTTTCTTCCEEECTTCEEG
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh-hcccCcCCCEEECCCCccc
Confidence 8888874 44557788899999999998875544 5788889999999999988754444 3445889999999999887
Q ss_pred c-cCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcC
Q 047203 508 G-TIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNL 586 (698)
Q Consensus 508 ~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 586 (698)
+ ..|..+..+++|++|++++|.+.+..|..+..+++| ++|++++|.+
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L--------------------------------~~L~L~~N~l 211 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL--------------------------------QVLNMSHNNF 211 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC--------------------------------CEEECTTSCC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC--------------------------------CEEECCCCcc
Confidence 6 577788999999999999999888777777666666 8899999999
Q ss_pred CccCChhhhccCCCCEEeCCCCcccccCCccccCC-CCCCeEeccCCcccccCC-cC-ccCCCCCCeEecccceeeecCC
Q 047203 587 SGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKL-EWLESLDLSKNKLSGSIP-PS-MVSLTFMNHLNLSYNNLSGEIP 663 (698)
Q Consensus 587 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~sL~~L~l~~~~~~~~~~-~~-l~~l~~L~~L~l~~n~~~~~~p 663 (698)
++..+..+..+++|+.|++++|++++..+..+..+ ++|++|++++|.+....+ .+ ..-+...+.+.+..+......|
T Consensus 212 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 88878789999999999999999998888889888 499999999999974321 11 1123445556666666666655
Q ss_pred CC
Q 047203 664 KV 665 (698)
Q Consensus 664 ~~ 665 (698)
..
T Consensus 292 ~~ 293 (306)
T 2z66_A 292 SD 293 (306)
T ss_dssp GG
T ss_pred hh
Confidence 43
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=7.7e-25 Score=231.79 Aligned_cols=231 Identities=20% Similarity=0.205 Sum_probs=165.1
Q ss_pred cCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEc
Q 047203 397 QQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDL 476 (698)
Q Consensus 397 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 476 (698)
++++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45666666666666555566666666666666666666665566666667777777777666555555666777777777
Q ss_pred CCCcCcccCchhhhhcCCCCcEEEccCCccccc-CChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccc
Q 047203 477 GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT-IPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYE 555 (698)
Q Consensus 477 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~ 555 (698)
++|++. .++...+..+++|+.|++++|...+. .+..+.++++|++|++++|.+.+. | .+.
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~---------------- 215 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLT---------------- 215 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCT----------------
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-ccc----------------
Confidence 777766 45555555577777777777443333 333577777788888887776643 2 122
Q ss_pred cceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 047203 556 GSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 635 (698)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~ 635 (698)
.+++|++|++++|.+++..+..|.++++|+.|++++|.++...+..|..+++|++|++++|.+.
T Consensus 216 ----------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 279 (452)
T 3zyi_A 216 ----------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279 (452)
T ss_dssp ----------------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ----------------ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC
Confidence 2345578888888888888888888889999999999988888888888899999999999888
Q ss_pred ccCCcCccCCCCCCeEecccceeeecC
Q 047203 636 GSIPPSMVSLTFMNHLNLSYNNLSGEI 662 (698)
Q Consensus 636 ~~~~~~l~~l~~L~~L~l~~n~~~~~~ 662 (698)
...++.+..+++|+.|+|++|++....
T Consensus 280 ~~~~~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 280 SLPHDLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp CCCTTSSTTCTTCCEEECCSSCEECST
T ss_pred ccChHHhccccCCCEEEccCCCcCCCC
Confidence 777777888899999999999877643
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=9.4e-26 Score=223.36 Aligned_cols=166 Identities=20% Similarity=0.175 Sum_probs=83.3
Q ss_pred CCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCc-cccccCccccccCCCcEE
Q 047203 372 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNT-LSGEIPDSIGCLLSVRFL 450 (698)
Q Consensus 372 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L 450 (698)
.++|++|++++|.+.......+..+++|+.|++++|.+.+..+..|..+++|++|++++|. +....+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 3455555555555554444445555555555555555554444555555555555555554 444434445555555555
Q ss_pred EccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcC
Q 047203 451 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNL 530 (698)
Q Consensus 451 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 530 (698)
++++|.+.+..+..+..+++|++|++++|++. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcc
Confidence 55555555444444555555555555555554 33333333345555555555554433333444455555555555544
Q ss_pred ccCCCccc
Q 047203 531 SGFIPSCV 538 (698)
Q Consensus 531 ~~~~~~~~ 538 (698)
.+..|..+
T Consensus 190 ~~~~~~~~ 197 (285)
T 1ozn_A 190 AHVHPHAF 197 (285)
T ss_dssp CEECTTTT
T ss_pred cccCHhHc
Confidence 44333333
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=4.1e-28 Score=267.38 Aligned_cols=409 Identities=16% Similarity=0.101 Sum_probs=198.3
Q ss_pred CCCCCCEEEcccCcccccCCccccC-CC-CCcEEECCCCCCC-CcccchhccCCCCCCEEeCcCccCCCccchhhccccc
Q 047203 50 NITRLSSLDLNTNDLQGDIPDGFSS-LN-SLQQLDLTGNSFL-GGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSE 126 (698)
Q Consensus 50 ~l~~L~~L~l~~~~~~~~~~~~~~~-l~-~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 126 (698)
.+++|++|++++|.+.+..+..+.. ++ +|++|++++|... ...+......+++|++|++++|.+++.....+..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~- 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA- 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH-
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH-
Confidence 4566666666666555444444443 22 3666666665411 111222234566666666666655433222111111
Q ss_pred cccCCCCcEEEccCCccc----ccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeeccCcccC----cccccc
Q 047203 127 CTNSSLLEKLELGFNQLT----GDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMN----GFPESF 198 (698)
Q Consensus 127 ~~~~~~L~~L~l~~~~i~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~----~~~~~l 198 (698)
.++++|++|++++|.++ ...+..+..+++|++|++++|.+.+ ++..+..+++|++|+++.+... ..+..+
T Consensus 189 -~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 189 -QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp -HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred -hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 12235666666666554 1223334456666666666665542 4445556666666666543221 133445
Q ss_pred CCCCCCcEEEccCCeeeeecCchhhcCCCCccEEecccccccceeeeecCCCccCCcceeEEEeccccCCccC-CccccC
Q 047203 199 GQLSAIEVLDLDENQWEGIITETHFRNLSNLKEISLYKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPKF-PTWLRN 277 (698)
Q Consensus 199 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~ 277 (698)
..+++|+.+++.++... .....+..+++|++|++.+ |.+.... +..+..
T Consensus 267 ~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~Ls~----------------------------~~l~~~~~~~~~~~ 316 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPN--EMPILFPFAAQIRKLDLLY----------------------------ALLETEDHCTLIQK 316 (592)
T ss_dssp CCCTTCCEEEETTCCTT--TGGGGGGGGGGCCEEEETT----------------------------CCCCHHHHHHHHTT
T ss_pred hccccccccCccccchh--HHHHHHhhcCCCcEEecCC----------------------------CcCCHHHHHHHHHh
Confidence 55666666666553211 1111233344444444433 2222111 122345
Q ss_pred CCCccEEEccCCcCcCCCCchhhhhccCCcEEEeccc---cccccCCCCcCCCCCCeEECCCCCCcCCCCCcccCccEEE
Q 047203 278 QTELTTLVLNNARISDTVPNWFWQLDLALDELDVGSN---ELSGRIPNSLGFRFPGTVDLSSNSFEGPLPLWSFNVTKLY 354 (698)
Q Consensus 278 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~L~~L~ 354 (698)
+++|+.|+++ +.+.+.....+....++|++|++++. ......
T Consensus 317 ~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~---------------------------------- 361 (592)
T 3ogk_B 317 CPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE---------------------------------- 361 (592)
T ss_dssp CTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST----------------------------------
T ss_pred CcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccc----------------------------------
Confidence 5666666665 33333333333333455555555520 000000
Q ss_pred cccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccC-ccCCcEEEee----CCccccC-----cCccCCCCCCcc
Q 047203 355 LNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGN-LQQLLTLVIS----NNNLSGE-----IPQLWSNISSLY 424 (698)
Q Consensus 355 l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~-----~~~~~~~l~~L~ 424 (698)
.+.+++.....+...+++|++|+++.+.+++.....+.. +++|+.|+++ .+.+++. .+..+.++++|+
T Consensus 362 --~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~ 439 (592)
T 3ogk_B 362 --EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLR 439 (592)
T ss_dssp --TCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCC
T ss_pred --cCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCC
Confidence 000111111111223555555555555444332223322 5556666654 2233321 112244566777
Q ss_pred EEEcccCc--cccccCcccc-ccCCCcEEEccCCeeeee-CCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEE
Q 047203 425 ILDMSNNT--LSGEIPDSIG-CLLSVRFLILCNNHISGE-VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILR 500 (698)
Q Consensus 425 ~L~L~~n~--~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 500 (698)
+|++++|. +++.....+. .+++|++|++++|.+++. .+..+..+++|++|++++|++++.....+...+++|+.|+
T Consensus 440 ~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 440 RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 77776543 3333222332 367777888877776542 2233466788888888888876554444445588888888
Q ss_pred ccCCcccccCChh-hccCCCCCEEECCCC
Q 047203 501 LRSNYFNGTIPPE-LCKLSALHILDLSHN 528 (698)
Q Consensus 501 l~~~~~~~~~~~~-l~~l~~L~~L~l~~~ 528 (698)
+++|++++..... ...+|.+....+..+
T Consensus 520 ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 520 VQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 8888876553332 345677776666554
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.5e-25 Score=225.62 Aligned_cols=234 Identities=21% Similarity=0.271 Sum_probs=156.3
Q ss_pred CCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEE
Q 047203 372 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLI 451 (698)
Q Consensus 372 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 451 (698)
.+.++.|++++|.+. .++..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+. .++..+..+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467777777777776 44555666777777777777776 56666677777777777777776 4455666677777777
Q ss_pred ccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCc
Q 047203 452 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLS 531 (698)
Q Consensus 452 l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 531 (698)
+++|.+.+..|..+.. ..+. . .+.++++|+.|++++|.+. .+|..+..+++|++|++++|.+.
T Consensus 157 L~~n~~~~~~p~~~~~------~~~~---------~-~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAS------TDAS---------G-EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEETTCCCCCSCSEE------EC-C---------C-CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCCccccChhHhh------ccch---------h-hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 7776655555554432 0000 0 0123666666666666666 55566666666666666666665
Q ss_pred cCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCccc
Q 047203 532 GFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLV 611 (698)
Q Consensus 532 ~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 611 (698)
+ +|..+..+++| ++|++++|.+.+.+|..+.++++|++|++++|.+.
T Consensus 220 ~-l~~~l~~l~~L--------------------------------~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 266 (328)
T 4fcg_A 220 A-LGPAIHHLPKL--------------------------------EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266 (328)
T ss_dssp C-CCGGGGGCTTC--------------------------------CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC
T ss_pred c-CchhhccCCCC--------------------------------CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch
Confidence 3 33334443333 66777776666677777777788888888888777
Q ss_pred ccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEeccccee
Q 047203 612 GKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNL 658 (698)
Q Consensus 612 ~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~ 658 (698)
+.+|..+..+++|++|++++|.+.+.+|+.+.++++|+.+++..+.+
T Consensus 267 ~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 77777777888888888888888778888888888888888776643
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=230.00 Aligned_cols=230 Identities=22% Similarity=0.242 Sum_probs=153.6
Q ss_pred cCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEc
Q 047203 397 QQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDL 476 (698)
Q Consensus 397 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 476 (698)
++++.|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45556666666655555555666666666666666665555555666666666666666665444445666666666666
Q ss_pred CCCcCcccCchhhhhcCCCCcEEEccCCccccc-CChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccc
Q 047203 477 GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT-IPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYE 555 (698)
Q Consensus 477 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~ 555 (698)
++|++. .++...+..+++|+.|++++|...+. .+..|.++++|++|++++|.+... | .+
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~----------------- 203 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NL----------------- 203 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CC-----------------
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-cc-----------------
Confidence 666665 44444444566666666666443323 333566777777777777766532 2 12
Q ss_pred cceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 047203 556 GSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 635 (698)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~ 635 (698)
..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+.
T Consensus 204 ---------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 204 ---------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp ---------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC
T ss_pred ---------------CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC
Confidence 22344577888888887777778888888888888888888777788888888888888888888
Q ss_pred ccCCcCccCCCCCCeEecccceeeec
Q 047203 636 GSIPPSMVSLTFMNHLNLSYNNLSGE 661 (698)
Q Consensus 636 ~~~~~~l~~l~~L~~L~l~~n~~~~~ 661 (698)
...++.+..+++|+.|+|++||+...
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred ccChhHhccccCCCEEEcCCCCccCC
Confidence 77777778888888888888887653
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.1e-25 Score=220.80 Aligned_cols=211 Identities=21% Similarity=0.205 Sum_probs=116.6
Q ss_pred CCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCc-CcccCchhhhhcCCCCcEE
Q 047203 421 SSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQ-LSGNIPAWIGESMPSLSIL 499 (698)
Q Consensus 421 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~L 499 (698)
++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|+ +. .++...+..+++|+.|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEE
Confidence 345555555555554444445555555555555555554445555555555555555554 33 3322223335555555
Q ss_pred EccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeE
Q 047203 500 RLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLM 579 (698)
Q Consensus 500 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 579 (698)
++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++| ++|
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------~~L 158 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL--------------------------------THL 158 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------CEE
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc--------------------------------cEE
Confidence 555555554445555555666666666665554444334333333 556
Q ss_pred EcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceee
Q 047203 580 DLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS 659 (698)
Q Consensus 580 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~ 659 (698)
++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+....++.+..+++|+.|++++|++.
T Consensus 159 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 66666665555555666666666666666666555666666666666666666666555555666666666666666666
Q ss_pred ecCCC
Q 047203 660 GEIPK 664 (698)
Q Consensus 660 ~~~p~ 664 (698)
...+.
T Consensus 239 c~~~~ 243 (285)
T 1ozn_A 239 CDCRA 243 (285)
T ss_dssp CSGGG
T ss_pred CCCCc
Confidence 54444
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=8.7e-26 Score=230.98 Aligned_cols=278 Identities=21% Similarity=0.178 Sum_probs=218.2
Q ss_pred CCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCc
Q 047203 329 PGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNN 408 (698)
Q Consensus 329 l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 408 (698)
....+.+++.+.......+++++.|++++|.+.+. +...+..+++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 33 ~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CeEeeCCCCCcccccccccccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 34456666766666555667899999999998854 44334569999999999999987777788899999999999999
Q ss_pred cccCcCccCCCCCCccEEEcccCccccccC-ccccccCCCcEEEccCC-eeeeeCCCCCCCCCCCCEEEcCCCcCcccCc
Q 047203 409 LSGEIPQLWSNISSLYILDMSNNTLSGEIP-DSIGCLLSVRFLILCNN-HISGEVPPSLKNCSMMDSLDLGDNQLSGNIP 486 (698)
Q Consensus 409 ~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~ 486 (698)
+.+..+..|..+++|++|++++|++..... ..+..+++|++|++++| .+....+..+..+++|++|++++|++.+..+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 191 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP 191 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence 986555668899999999999999886544 47888999999999998 4666667789999999999999999986556
Q ss_pred hhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccc
Q 047203 487 AWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQ 566 (698)
Q Consensus 487 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 566 (698)
..+. .+++|+.|++++|.+.......+..+++|++|++++|.+.+..+..+...
T Consensus 192 ~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~------------------------- 245 (353)
T 2z80_A 192 KSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG------------------------- 245 (353)
T ss_dssp TTTT-TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------------------------
T ss_pred HHHh-ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccc-------------------------
Confidence 5544 48999999999999874444456678999999999999887655443321
Q ss_pred eeeeccccccCeEEcCCCcCCc----cCChhhhccCCCCEEeCCCCcccccCCcc-ccCCCCCCeEeccCCcccccC
Q 047203 567 YVFYSTLYLVNLMDLSSNNLSG----EMPVELTRLIHLGTLNLSQNHLVGKIPTQ-IGKLEWLESLDLSKNKLSGSI 638 (698)
Q Consensus 567 ~~~~~~~~~L~~l~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~sL~~L~l~~~~~~~~~ 638 (698)
.....++.++++++.+++ .+|..+.++++|++|++++|+++ .+|.. |..+++|++|++++|.+....
T Consensus 246 ----~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 246 ----ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ----cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 122345667777777765 36777899999999999999999 55655 588999999999999988544
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1e-24 Score=230.87 Aligned_cols=247 Identities=21% Similarity=0.226 Sum_probs=168.0
Q ss_pred cEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEccc
Q 047203 351 TKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSN 430 (698)
Q Consensus 351 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 430 (698)
..++..+.++. .+|..+ .+++++|++++|++....+..|.++++|+.|++++|.+.+..+..|.++++|++|++++
T Consensus 57 ~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 57 SKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp CEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 34555554444 344433 35667777777776665566666777777777777777666666677777777777777
Q ss_pred CccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccC
Q 047203 431 NTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTI 510 (698)
Q Consensus 431 n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 510 (698)
|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|...+.++...+.++++|+.|++++|.+.+.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 7776665556666777777777777776555566777777777777775544466665555677777777777777633
Q ss_pred ChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccC
Q 047203 511 PPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEM 590 (698)
Q Consensus 511 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 590 (698)
+ .+..+++|++|++++|.+.+..|..+.++++| +.|++++|.+++..
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L--------------------------------~~L~L~~n~l~~~~ 258 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL--------------------------------KKLWVMNSQVSLIE 258 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTC--------------------------------CEEECTTSCCCEEC
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCC--------------------------------CEEEeCCCcCceEC
Confidence 2 46677777777777777776666666555555 66777777777777
Q ss_pred ChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 047203 591 PVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 635 (698)
Q Consensus 591 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~ 635 (698)
+..|.++++|+.|+|++|++++..++.+..+++|++|++++|.+.
T Consensus 259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 777777777777777777777665666777777777777777654
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=6.7e-25 Score=220.93 Aligned_cols=235 Identities=19% Similarity=0.277 Sum_probs=193.1
Q ss_pred ccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEE
Q 047203 347 SFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYIL 426 (698)
Q Consensus 347 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 426 (698)
...++.|+++++.+. .++..++. +++|++|++++|.+. .++..+..+++|+.|++++|.+. .+|..+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 358999999999998 77777766 999999999999998 67788999999999999999998 678889999999999
Q ss_pred EcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcc
Q 047203 427 DMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYF 506 (698)
Q Consensus 427 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 506 (698)
++++|.+.+..+..+.. . .....+..+++|++|++++|++. .+|..+.. +++|+.|++++|.+
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIAN-LQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGG-CTTCCEEEEESSCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcC-CCCCCEEEccCCCC
Confidence 99999877666654432 1 12234566778888888888877 67766444 88888888888888
Q ss_pred cccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcC
Q 047203 507 NGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNL 586 (698)
Q Consensus 507 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~ 586 (698)
. .+++.+..+++|++|++++|.+.+.+|..+..+++| +.|++++|.+
T Consensus 219 ~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L--------------------------------~~L~L~~n~~ 265 (328)
T 4fcg_A 219 S-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL--------------------------------KRLILKDCSN 265 (328)
T ss_dssp C-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC--------------------------------CEEECTTCTT
T ss_pred C-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC--------------------------------CEEECCCCCc
Confidence 7 456678888888888888888888777777666666 7888888888
Q ss_pred CccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 047203 587 SGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 635 (698)
Q Consensus 587 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~ 635 (698)
.+.+|..+..+++|++|+|++|.+.+.+|+.+..+++|+.+++..+.+.
T Consensus 266 ~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 8888888899999999999999988899999999999999988876554
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.1e-24 Score=229.68 Aligned_cols=229 Identities=22% Similarity=0.224 Sum_probs=133.8
Q ss_pred CCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEc
Q 047203 373 PFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLIL 452 (698)
Q Consensus 373 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 452 (698)
++++.|++++|++.......|.++++|+.|++++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 45555555555555444455555566666666666555444455556666666666666655544445555666666666
Q ss_pred cCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCcc
Q 047203 453 CNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSG 532 (698)
Q Consensus 453 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 532 (698)
++|.+....+..|..+++|++|++++|...+.++...+.++++|+.|++++|.+. .+| .+..+++|++|++++|.+.+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 6666655545555666666666666644333455544445666666666666655 222 35556666666666666665
Q ss_pred CCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccc
Q 047203 533 FIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVG 612 (698)
Q Consensus 533 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 612 (698)
..|..+.++++| +.|++++|.+++..+..|.++++|++|+|++|+++.
T Consensus 222 ~~~~~~~~l~~L--------------------------------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 222 IRPGSFQGLMHL--------------------------------QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp ECTTTTTTCTTC--------------------------------CEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred cChhhhccCccC--------------------------------CEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 555555544444 556666666666666666666666666666666665
Q ss_pred cCCccccCCCCCCeEeccCCccc
Q 047203 613 KIPTQIGKLEWLESLDLSKNKLS 635 (698)
Q Consensus 613 ~~~~~l~~l~sL~~L~l~~~~~~ 635 (698)
..++.|..+++|+.|++++|.+.
T Consensus 270 ~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 270 LPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhHhccccCCCEEEcCCCCcc
Confidence 55555566666666666666553
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=3.2e-26 Score=230.07 Aligned_cols=262 Identities=20% Similarity=0.169 Sum_probs=207.7
Q ss_pred ccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcc
Q 047203 350 VTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMS 429 (698)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 429 (698)
++..+++.+.+. ..+...+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 444455555554 3334444567889999999999987777788899999999999999885544 8889999999999
Q ss_pred cCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCccccc
Q 047203 430 NNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT 509 (698)
Q Consensus 430 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 509 (698)
+|.+.+.. ..++|++|++++|.+.+..+.. +++|++|++++|++.+ ++...+..+++|+.|++++|.+.+.
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCcc
Confidence 99987532 3489999999999988655443 5789999999999984 4444445589999999999999877
Q ss_pred CChhh-ccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCc
Q 047203 510 IPPEL-CKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSG 588 (698)
Q Consensus 510 ~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~ 588 (698)
.+..+ ..+++|++|++++|.+.+..+ . ..+++|++|++++|.+++
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~--~--------------------------------~~l~~L~~L~Ls~N~l~~ 205 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG--Q--------------------------------VVFAKLKTLDLSSNKLAF 205 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC--C--------------------------------CCCTTCCEEECCSSCCCE
T ss_pred cHHHHhhccCcCCEEECCCCcCccccc--c--------------------------------cccccCCEEECCCCcCCc
Confidence 66665 478999999999998875411 1 124566999999999985
Q ss_pred cCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCccc-ccCCcCccCCCCCCeEecccceee
Q 047203 589 EMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS-GSIPPSMVSLTFMNHLNLSYNNLS 659 (698)
Q Consensus 589 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~ 659 (698)
. +..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+. ...|+.+..+++|+.+++++|+..
T Consensus 206 l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l 275 (317)
T 3o53_A 206 M-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275 (317)
T ss_dssp E-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred c-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhc
Confidence 4 445889999999999999998 56888899999999999999998 778888999999999999955443
No 64
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=7.3e-28 Score=265.58 Aligned_cols=155 Identities=14% Similarity=0.138 Sum_probs=68.7
Q ss_pred CCCCCCEEEccCCcCCCCCCcccc-CccCCcEEEee--C----CccccC-----cCccCCCCCCccEEEcccCccccccC
Q 047203 371 KIPFLTDLDISFNSLNGSVPKSIG-NLQQLLTLVIS--N----NNLSGE-----IPQLWSNISSLYILDMSNNTLSGEIP 438 (698)
Q Consensus 371 ~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~l~~L~~L~L~~n~~~~~~~ 438 (698)
.+++|++|.+..+.++......+. .+++|+.|+++ + +.++.. .+..+..+++|++|++++ .+.+...
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 355666665555555432222222 35566666665 2 122210 111133455566666654 3333222
Q ss_pred ccccc-cCCCcEEEccCCeeeeeCCCCC-CCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhh-c
Q 047203 439 DSIGC-LLSVRFLILCNNHISGEVPPSL-KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-C 515 (698)
Q Consensus 439 ~~~~~-~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~ 515 (698)
..+.. +++|++|++++|.+++.....+ ..+++|++|++++|++++.....+...+++|+.|++++|+++......+ .
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence 22322 4555555555555433222222 3455555555555555433333333335555555555555532222222 3
Q ss_pred cCCCCCEEECC
Q 047203 516 KLSALHILDLS 526 (698)
Q Consensus 516 ~l~~L~~L~l~ 526 (698)
.+|.|+...+.
T Consensus 529 ~lp~l~i~~~~ 539 (594)
T 2p1m_B 529 KMPKLNVEVID 539 (594)
T ss_dssp HCTTEEEEEEC
T ss_pred hCCCCEEEEec
Confidence 34555444443
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=9.9e-27 Score=256.50 Aligned_cols=436 Identities=14% Similarity=0.103 Sum_probs=257.1
Q ss_pred CCCCCCCCcEEECCCCCCCCC---CC------------ccccCCCCCCEEEcccCcccccCCcccc-CCCCCcEEECCCC
Q 047203 23 PSLNFTSLQVLDLSNNGFNSK---IP------------HWLFNITRLSSLDLNTNDLQGDIPDGFS-SLNSLQQLDLTGN 86 (698)
Q Consensus 23 ~~~~~~~L~~L~L~~~~~~~~---~~------------~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~ 86 (698)
.+.++++|++|+++++..... .| .....+++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 345677788888887753211 11 1234677888888888877766666664 6788888888888
Q ss_pred CCCCc-ccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCc--cccc-CCccccCCCCCcEEEc
Q 047203 87 SFLGG-RLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQ--LTGD-LPNSLGYLKNLRYLEL 162 (698)
Q Consensus 87 ~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~--i~~~-~~~~~~~l~~L~~L~l 162 (698)
..... ..+..+..+++|++|++++|.+++.....+..+. ..+++|++|++++|. +... ....+..+++|++|++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~--~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP--DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC--TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh--hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 42222 2344455788888888888877665544444332 244578888888875 2211 1222345688888888
Q ss_pred cCceeeecCCCCCcCcccCCeeeccCcc-------cCccccccCCCCCCcEE-EccCCeeeeecCchhhcCCCCccEEec
Q 047203 163 WDNSFVGSIPPSIGNLTFLKELYLSSNQ-------MNGFPESFGQLSAIEVL-DLDENQWEGIITETHFRNLSNLKEISL 234 (698)
Q Consensus 163 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~~~~l~~L~~L~l 234 (698)
++|.....++..+..+++|++|++..+. +..++..+.++++|+.+ .+.+... ......+..+++|++|++
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~--~~l~~~~~~~~~L~~L~L 296 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP--AYLPAVYSVCSRLTTLNL 296 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG--GGGGGGHHHHTTCCEEEC
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch--hhHHHHHHhhCCCCEEEc
Confidence 8873322355566777888888865443 33455567778888887 3333221 111112234556666665
Q ss_pred ccccccceeeeecCCCccCCcceeEEEeccccCCcc-CCccccCCCCccEEEccCCcCcCCCCchhhhhccCCcEEEecc
Q 047203 235 YKLSENISLIFNISSHWIPPFKLTFIKIRSCQLGPK-FPTWLRNQTELTTLVLNNARISDTVPNWFWQLDLALDELDVGS 313 (698)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 313 (698)
.+ |.+... ....+..+++|++|++++| +.+.....+....++|++|++..
T Consensus 297 ~~----------------------------~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~ 347 (594)
T 2p1m_B 297 SY----------------------------ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFP 347 (594)
T ss_dssp TT----------------------------CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEEC
T ss_pred cC----------------------------CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEec
Confidence 54 222211 1122334556666666655 33222222333345566666643
Q ss_pred ccccccCCCCcCCCCCCeEECCCCCCcC----CCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEcc--C----C
Q 047203 314 NELSGRIPNSLGFRFPGTVDLSSNSFEG----PLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDIS--F----N 383 (698)
Q Consensus 314 ~~l~~~~~~~~~~~~l~~l~l~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~--~----~ 383 (698)
+.-.+. ...+.+.. .....+++|+.|.+..+.+++.....+...+++|++|+++ + +
T Consensus 348 ~~~~g~--------------~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 348 SEPFVM--------------EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp SCTTCS--------------SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred Cccccc--------------ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 221000 00000000 0001134677776666666655555555558889999998 3 3
Q ss_pred cCCCCCC-----ccccCccCCcEEEeeCCccccCcCccCC-CCCCccEEEcccCccccccCccc-cccCCCcEEEccCCe
Q 047203 384 SLNGSVP-----KSIGNLQQLLTLVISNNNLSGEIPQLWS-NISSLYILDMSNNTLSGEIPDSI-GCLLSVRFLILCNNH 456 (698)
Q Consensus 384 ~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~-~~~~~L~~L~l~~~~ 456 (698)
.++.... ..+..+++|+.|++++ .+.......+. .+++|++|++++|.+++.....+ ..+++|++|++++|.
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 4442111 1255678999999977 44433333333 37889999999999876544444 568999999999999
Q ss_pred eeeeCCC-CCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcc
Q 047203 457 ISGEVPP-SLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYF 506 (698)
Q Consensus 457 ~~~~~~~-~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 506 (698)
+++.... ....+++|++|++++|++++.....+...+|.|+...+.++..
T Consensus 493 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 493 FGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGA 543 (594)
T ss_dssp CCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred CcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCc
Confidence 8543332 3456899999999999987555555555689998887776653
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=3.1e-24 Score=215.57 Aligned_cols=255 Identities=18% Similarity=0.166 Sum_probs=202.8
Q ss_pred CCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccC
Q 047203 375 LTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCN 454 (698)
Q Consensus 375 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 454 (698)
++..+++.+.+.......+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455566665554444455667899999999999997777889999999999999999986554 88899999999999
Q ss_pred CeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCC
Q 047203 455 NHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFI 534 (698)
Q Consensus 455 ~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 534 (698)
|.+++.. ..++|++|++++|++.+ ++.. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred Ccccccc-----CCCCcCEEECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9997443 34899999999999984 3332 2789999999999999777778899999999999999988765
Q ss_pred CcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccC
Q 047203 535 PSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKI 614 (698)
Q Consensus 535 ~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 614 (698)
+..+. ..+++|++|++++|.+++.. ....+++|++|++++|++++ +
T Consensus 161 ~~~~~-------------------------------~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l 206 (317)
T 3o53_A 161 FAELA-------------------------------ASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-M 206 (317)
T ss_dssp GGGGG-------------------------------GGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-E
T ss_pred HHHHh-------------------------------hccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCc-c
Confidence 54442 12345599999999998652 33458999999999999995 4
Q ss_pred CccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceee-ecCCCC-CccccCCCCc
Q 047203 615 PTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLS-GEIPKV-NQFQSLKDPS 675 (698)
Q Consensus 615 ~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~p~~-~~~~~~~~~~ 675 (698)
+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++. +.+|.. +...+++.+.
T Consensus 207 ~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~ 268 (317)
T 3o53_A 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268 (317)
T ss_dssp CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHH
T ss_pred hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEE
Confidence 555899999999999999999 56888999999999999999999 444432 3333444443
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=4.1e-22 Score=215.65 Aligned_cols=242 Identities=27% Similarity=0.314 Sum_probs=148.7
Q ss_pred cCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEE
Q 047203 348 FNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILD 427 (698)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 427 (698)
++|+.|++++|.+. .++. .+++|++|++++|+++.. +. .+++|+.|++++|.+.+ ++. .+++|++|+
T Consensus 61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEE
Confidence 45666666666555 3333 256666666666666532 22 45666666766666663 222 346666777
Q ss_pred cccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCccc
Q 047203 428 MSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFN 507 (698)
Q Consensus 428 L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 507 (698)
+++|.+..+ +. .+++|++|++++|.+++ .+. .+++|+.|++++|.+. .+| ..+++|+.|++++|.+.
T Consensus 128 L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 128 IFGNQLTSL-PV---LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp CCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCS
T ss_pred CCCCCCCcC-CC---CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCC
Confidence 777666542 22 23667777777776652 222 2356777777777766 455 22567777777777766
Q ss_pred ccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCC
Q 047203 508 GTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLS 587 (698)
Q Consensus 508 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~ 587 (698)
+ +|. ..++|++|++++|.+... |. .+++|+.|++++|.++
T Consensus 195 ~-l~~---~~~~L~~L~L~~N~l~~l-~~-----------------------------------~~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 195 S-LPT---LPSELYKLWAYNNRLTSL-PA-----------------------------------LPSGLKELIVSGNRLT 234 (622)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSSC-CC-----------------------------------CCTTCCEEECCSSCCS
T ss_pred C-CCC---ccchhhEEECcCCccccc-CC-----------------------------------CCCCCCEEEccCCccC
Confidence 3 332 236677777777766532 11 1234477777777776
Q ss_pred ccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecCCC
Q 047203 588 GEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPK 664 (698)
Q Consensus 588 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 664 (698)
+ +| ..+++|+.|++++|.++ .+|. .+++|++|++++|.+. .+|..+..+++|+.|+|++|++.+..|.
T Consensus 235 ~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 235 S-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred c-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 4 34 34567788888888777 4444 4577788888888777 6677777788888888888877765543
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=2.3e-25 Score=223.27 Aligned_cols=81 Identities=30% Similarity=0.326 Sum_probs=54.4
Q ss_pred ccCeEEcCCCcCCccCC-hhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEec
Q 047203 575 LVNLMDLSSNNLSGEMP-VELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNL 653 (698)
Q Consensus 575 ~L~~l~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 653 (698)
+|+.|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+.+. |. +..+++|++|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 33555555555554442 33445677777777777777 6666655 7788888888877754 55 777788888888
Q ss_pred ccceeee
Q 047203 654 SYNNLSG 660 (698)
Q Consensus 654 ~~n~~~~ 660 (698)
++|++.+
T Consensus 304 ~~N~l~~ 310 (312)
T 1wwl_A 304 KGNPFLD 310 (312)
T ss_dssp TTCTTTC
T ss_pred cCCCCCC
Confidence 8887664
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.6e-22 Score=198.99 Aligned_cols=211 Identities=23% Similarity=0.226 Sum_probs=129.5
Q ss_pred CccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEc
Q 047203 422 SLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRL 501 (698)
Q Consensus 422 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l 501 (698)
+|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++.+ ++...+..+++|+.|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-cChhhhcCCccccEEEC
Confidence 45555555555554444445555555555555555554444455555555555555555552 22222333555666666
Q ss_pred cCCcccccCChhhccCCCCCEEECCCCcCccC-CCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEE
Q 047203 502 RSNYFNGTIPPELCKLSALHILDLSHNNLSGF-IPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMD 580 (698)
Q Consensus 502 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~ 580 (698)
++|.+.+..+..+..+++|++|++++|.+.+. +|..+.++++| ++|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L--------------------------------~~L~ 155 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL--------------------------------EHLD 155 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC--------------------------------CEEE
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC--------------------------------CEEE
Confidence 65555544444456666666666666666543 34444444444 5666
Q ss_pred cCCCcCCccCChhhhccCCCC----EEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccc
Q 047203 581 LSSNNLSGEMPVELTRLIHLG----TLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 656 (698)
Q Consensus 581 l~~n~~~~~~~~~l~~l~~L~----~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 656 (698)
+++|.+++..+..+..+++|+ +|++++|.+++..+..+ ...+|++|++++|.+....++.+..+++|+.|++++|
T Consensus 156 Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 666666655555666666666 78888888885554444 3458999999999988776677788999999999999
Q ss_pred eeeecCCCCC
Q 047203 657 NLSGEIPKVN 666 (698)
Q Consensus 657 ~~~~~~p~~~ 666 (698)
++....|...
T Consensus 235 ~~~c~c~~l~ 244 (276)
T 2z62_A 235 PWDCSCPRID 244 (276)
T ss_dssp CBCCCTTTTH
T ss_pred cccccCCchH
Confidence 9988877553
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.2e-24 Score=227.96 Aligned_cols=236 Identities=22% Similarity=0.192 Sum_probs=145.0
Q ss_pred CCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEE
Q 047203 372 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLI 451 (698)
Q Consensus 372 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 451 (698)
+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+ |..+++|++|++++|.+.+.. ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 4467777777777766656666777777777777777664443 666777777777777666432 236677777
Q ss_pred ccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhc-cCCCCCEEECCCCcC
Q 047203 452 LCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELC-KLSALHILDLSHNNL 530 (698)
Q Consensus 452 l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~ 530 (698)
+++|.+.+..+. .+++|++|++++|.+.+..+..+ ..+++|+.|++++|.+.+..|..+. .+++|++|++++|.+
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 777766644333 34566777777776664333333 3366677777777766655555554 566677777776666
Q ss_pred ccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcc
Q 047203 531 SGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHL 610 (698)
Q Consensus 531 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 610 (698)
.+..+. ..+++|+.|++++|.+++..+ .+..+++|+.|++++|.+
T Consensus 182 ~~~~~~----------------------------------~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 182 YDVKGQ----------------------------------VVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp CEEECC----------------------------------CCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCC
T ss_pred cccccc----------------------------------ccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcC
Confidence 543111 113444666666666664333 366666666777766666
Q ss_pred cccCCccccCCCCCCeEeccCCccc-ccCCcCccCCCCCCeEecc
Q 047203 611 VGKIPTQIGKLEWLESLDLSKNKLS-GSIPPSMVSLTFMNHLNLS 654 (698)
Q Consensus 611 ~~~~~~~l~~l~sL~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~ 654 (698)
+ .+|..+..+++|+.|++++|.+. ..+|..+..++.|+.++++
T Consensus 227 ~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp C-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred c-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 6 35555666666666666666665 4455666666666666665
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=9.1e-24 Score=224.42 Aligned_cols=218 Identities=20% Similarity=0.158 Sum_probs=180.9
Q ss_pred CccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEE
Q 047203 395 NLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSL 474 (698)
Q Consensus 395 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 474 (698)
.+++|+.|++++|.+.+..+..|..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 45689999999999987777889999999999999999886554 888899999999999987543 23889999
Q ss_pred EcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccc-cccCCCcCCCCCcc
Q 047203 475 DLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVG-NFSRMKIEPPDSVE 553 (698)
Q Consensus 475 ~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~~~~~~~~ 553 (698)
++++|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+. .+++|
T Consensus 105 ~L~~N~l~~~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L--------- 171 (487)
T 3oja_A 105 HAANNNISRVSCS----RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL--------- 171 (487)
T ss_dssp ECCSSCCCCEEEC----CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC---------
T ss_pred ECcCCcCCCCCcc----ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc---------
Confidence 9999998844332 278899999999999888788889999999999999999877666554 44444
Q ss_pred cccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCc
Q 047203 554 YEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNK 633 (698)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~ 633 (698)
+.|++++|.+++..+ +..+++|+.|++++|.+++. |..+..+++|+.|++++|.
T Consensus 172 -----------------------~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 172 -----------------------EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp -----------------------CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSC
T ss_pred -----------------------cEEecCCCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCc
Confidence 889999999986633 44589999999999999854 4458889999999999999
Q ss_pred ccccCCcCccCCCCCCeEecccceee
Q 047203 634 LSGSIPPSMVSLTFMNHLNLSYNNLS 659 (698)
Q Consensus 634 ~~~~~~~~l~~l~~L~~L~l~~n~~~ 659 (698)
+.. +|..+..+++|+.|++++|++.
T Consensus 226 l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 226 LVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred Ccc-cchhhccCCCCCEEEcCCCCCc
Confidence 984 6778889999999999999998
No 72
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=8e-22 Score=213.40 Aligned_cols=248 Identities=25% Similarity=0.286 Sum_probs=182.2
Q ss_pred CCCCeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeC
Q 047203 327 RFPGTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISN 406 (698)
Q Consensus 327 ~~l~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 406 (698)
+.++.+++++|.+..... .+++|+.|++++|.+. .++. .+++|++|++++|++..... .+++|+.|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA-LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC-CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC-cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCC
Confidence 344444444444443222 4567888888888776 3444 47888888888888875332 468888999998
Q ss_pred CccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCc
Q 047203 407 NNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIP 486 (698)
Q Consensus 407 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~ 486 (698)
|.+.. +|.. +++|++|++++|.+.+. +. .+++|+.|++++|.++. .+ ..+++|++|++++|.+. .+|
T Consensus 131 N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-~l~ 197 (622)
T 3g06_A 131 NQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-SLP 197 (622)
T ss_dssp SCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCC
T ss_pred CCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-CCC
Confidence 88874 3432 48899999999988753 22 35788999999998874 44 45688999999999887 465
Q ss_pred hhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccc
Q 047203 487 AWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQ 566 (698)
Q Consensus 487 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 566 (698)
.. +++|+.|++++|.+. .++. .+++|++|++++|.+++ +| ..
T Consensus 198 ~~----~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~-------------------------- 239 (622)
T 3g06_A 198 TL----PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VL-------------------------- 239 (622)
T ss_dssp CC----CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CC--------------------------
T ss_pred Cc----cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CC--------------------------
Confidence 42 678999999999887 4443 35789999999998775 22 11
Q ss_pred eeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCC
Q 047203 567 YVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLT 646 (698)
Q Consensus 567 ~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~ 646 (698)
+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..|..+..++
T Consensus 240 ------l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 240 ------PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp ------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred ------CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 244588999999988 4454 5688999999999998 7788899999999999999999888777776554
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=4.3e-24 Score=213.99 Aligned_cols=245 Identities=22% Similarity=0.264 Sum_probs=174.8
Q ss_pred CccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCC-CCCcccc-------CccCCcEEEeeCCccccCcCccC--C
Q 047203 349 NVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNG-SVPKSIG-------NLQQLLTLVISNNNLSGEIPQLW--S 418 (698)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~--~ 418 (698)
+++.+++++|.+ .+|..+... |+.|++++|.+.. ..+..+. ++++|+.|++++|.+.+..|..+ .
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 566666666666 455544332 6677777776642 2222222 57788888888888876666654 7
Q ss_pred CCCCccEEEcccCccccccCcccccc-----CCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccC--chhh-h
Q 047203 419 NISSLYILDMSNNTLSGEIPDSIGCL-----LSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNI--PAWI-G 490 (698)
Q Consensus 419 ~l~~L~~L~L~~n~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~--~~~~-~ 490 (698)
.+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+.+ +..+ +
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 788888888888888765 5666655 78888888888888777678888888888888888876442 2222 2
Q ss_pred hcCCCCcEEEccCCcccc---cCChhhccCCCCCEEECCCCcCccCCC-cccccccCCCcCCCCCcccccceEEeecccc
Q 047203 491 ESMPSLSILRLRSNYFNG---TIPPELCKLSALHILDLSHNNLSGFIP-SCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQ 566 (698)
Q Consensus 491 ~~l~~L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 566 (698)
..+++|+.|++++|.+.+ .....+..+++|++|++++|.+.+..| ..+..
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-------------------------- 251 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW-------------------------- 251 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC--------------------------
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh--------------------------
Confidence 458888889998888873 222344677889999999988876553 22222
Q ss_pred eeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccc
Q 047203 567 YVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSG 636 (698)
Q Consensus 567 ~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~ 636 (698)
+++|+.|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|.+.+
T Consensus 252 ------l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 252 ------PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ------CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred ------cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 344588899999888 6666555 7899999999999855 55 8888999999999998874
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=6.5e-22 Score=193.73 Aligned_cols=205 Identities=24% Similarity=0.267 Sum_probs=134.1
Q ss_pred ccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEcc
Q 047203 423 LYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLR 502 (698)
Q Consensus 423 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 502 (698)
.+.++++++.+.. +|..+ .+++++|++++|.+....+..|..+++|++|++++|.+. .++...+..+++|++|+++
T Consensus 18 ~~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSKKLTA-IPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCCCCCc-cCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECC
Confidence 3445555555442 22222 245566666666555444445666666666666666665 4555555556666666666
Q ss_pred CCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcC
Q 047203 503 SNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLS 582 (698)
Q Consensus 503 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~ 582 (698)
+|.+.+..+..+..+++|++|++++|.+.+..+..+..+++| +.|+++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------------------------------~~L~Ls 141 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL--------------------------------TYLSLG 141 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC--------------------------------CEEECC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC--------------------------------CEEECC
Confidence 666665555556666777777777776665555555444444 667777
Q ss_pred CCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecC
Q 047203 583 SNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEI 662 (698)
Q Consensus 583 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 662 (698)
+|.+++..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+....+..+..+++|+.|++++|++....
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 142 YNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 77777666666777888888888888887666667777888888888888887666666778888888888888887665
Q ss_pred C
Q 047203 663 P 663 (698)
Q Consensus 663 p 663 (698)
+
T Consensus 222 ~ 222 (270)
T 2o6q_A 222 N 222 (270)
T ss_dssp S
T ss_pred c
Confidence 5
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.4e-21 Score=189.72 Aligned_cols=203 Identities=29% Similarity=0.394 Sum_probs=175.3
Q ss_pred cceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEEC
Q 047203 4 SLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDL 83 (698)
Q Consensus 4 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 83 (698)
.++.++++++++..+|...+ +++++|++++|.+++..+.+|..+++|++|++++|.+....+..|.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~----~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP----ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC----TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCCCC----CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 46789999999998886443 68999999999999877778999999999999999999777777899999999999
Q ss_pred CCCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEcc
Q 047203 84 TGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELW 163 (698)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 163 (698)
++|.+ ....+..+.++++|++|++++|.++...+..|..++ +|++|++++|.++...+..|..+++|++|+++
T Consensus 93 ~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 93 TDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp CSSCC-CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcC-CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc------CCCEEECCCCcCCccCHhHccCCcccceeEec
Confidence 99984 444556788999999999999999988777676665 89999999999998777789999999999999
Q ss_pred CceeeecCCCCCcCcccCCeeeccCcccCcccc-ccCCCCCCcEEEccCCeeeee
Q 047203 164 DNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPE-SFGQLSAIEVLDLDENQWEGI 217 (698)
Q Consensus 164 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~ 217 (698)
+|.+....+..|..+++|++|++++|.++.+|. .+..+++|+.|++++|.+...
T Consensus 166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 166 NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 999987777778899999999999999998765 478899999999999987654
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.9e-21 Score=191.83 Aligned_cols=203 Identities=26% Similarity=0.259 Sum_probs=181.4
Q ss_pred CCCcceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcE
Q 047203 1 MLRSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQ 80 (698)
Q Consensus 1 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 80 (698)
++++++++++.+++++.+|...+ +++++|++++|.+++..+..|..+++|++|++++|.+.+..+. ..+++|++
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~~----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred ccCCccEEECCCCCCCcCCCCCC----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 46889999999999998887443 7899999999999988888999999999999999999865443 78999999
Q ss_pred EECCCCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEE
Q 047203 81 LDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYL 160 (698)
Q Consensus 81 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 160 (698)
|++++|.+ ..++..+..+++|++|++++|+++...+..|..+. +|++|++++|.++...+..|..+++|++|
T Consensus 82 L~Ls~N~l--~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 82 LDLSHNQL--QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG------ELQELYLKGNELKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp EECCSSCC--SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT------TCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred EECCCCcC--CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCC------CCCEEECCCCCCCccChhhcccccCCCEE
Confidence 99999996 36777889999999999999999988877777766 89999999999998888889999999999
Q ss_pred EccCceeeecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccCCeeeee
Q 047203 161 ELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGI 217 (698)
Q Consensus 161 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 217 (698)
++++|++....+..+..+++|++|++++|+++.+|..+...+.|+.+++++|.+...
T Consensus 154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 154 SLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 999999986666677889999999999999999999999999999999999988654
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=2.3e-21 Score=190.74 Aligned_cols=210 Identities=22% Similarity=0.222 Sum_probs=151.6
Q ss_pred cCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEc
Q 047203 397 QQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDL 476 (698)
Q Consensus 397 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 476 (698)
++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45677777777766555556677777777777777776666666777777777777777777666667777778888888
Q ss_pred CCCcCcccCchhhhhcCCCCcEEEccCCccccc-CChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccc
Q 047203 477 GDNQLSGNIPAWIGESMPSLSILRLRSNYFNGT-IPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYE 555 (698)
Q Consensus 477 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~ 555 (698)
++|.+. .++...+..+++|+.|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+..+++++
T Consensus 108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---------- 176 (276)
T 2z62_A 108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP---------- 176 (276)
T ss_dssp TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT----------
T ss_pred CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc----------
Confidence 887776 34433344477888888888887753 577888888888888888888776666666555552
Q ss_pred cceEEeecccceeeeccccccC-eEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcc
Q 047203 556 GSLQVVLKGTQYVFYSTLYLVN-LMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKL 634 (698)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~ 634 (698)
.+. ++++++|.+++..+..+. ..+|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 177 -------------------~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 177 -------------------LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp -------------------TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred -------------------ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 112 688888888865555444 35899999999998866666678889999999999988
Q ss_pred ccc
Q 047203 635 SGS 637 (698)
Q Consensus 635 ~~~ 637 (698)
...
T Consensus 237 ~c~ 239 (276)
T 2z62_A 237 DCS 239 (276)
T ss_dssp CCC
T ss_pred ccc
Confidence 743
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=5.2e-21 Score=188.70 Aligned_cols=204 Identities=24% Similarity=0.242 Sum_probs=105.8
Q ss_pred ccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCC
Q 047203 393 IGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMD 472 (698)
Q Consensus 393 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 472 (698)
+.+++++++++++++.++. +|..+. +.+++|++++|.+....+..|..+++|++|++++|.++...+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 4455666666666666653 332222 4566666666666655555555666666666666665533221 4455555
Q ss_pred EEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCc
Q 047203 473 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSV 552 (698)
Q Consensus 473 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~ 552 (698)
+|++++|++. .+|..+. .+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N------------------------ 134 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN------------------------ 134 (290)
T ss_dssp EEECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS------------------------
T ss_pred EEECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC------------------------
Confidence 5555555554 3443222 2455555555555554443344445555555555555
Q ss_pred ccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCC
Q 047203 553 EYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKN 632 (698)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~ 632 (698)
.+++..+..|..+++|+.|++++|+++...+..|..+++|++|++++|
T Consensus 135 --------------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 135 --------------------------------ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp --------------------------------CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------------------CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence 444444444455555555555555555333344445555555555555
Q ss_pred cccccCCcCccCCCCCCeEecccceeee
Q 047203 633 KLSGSIPPSMVSLTFMNHLNLSYNNLSG 660 (698)
Q Consensus 633 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 660 (698)
.+. .+|..+..+++|+.+++++||+..
T Consensus 183 ~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 183 SLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCC-ccChhhcccccCCeEEeCCCCccC
Confidence 555 444455555555555555555543
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.6e-21 Score=189.60 Aligned_cols=182 Identities=25% Similarity=0.279 Sum_probs=109.1
Q ss_pred cccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCC
Q 047203 442 GCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALH 521 (698)
Q Consensus 442 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 521 (698)
..+++|++|++++|.+.+ ...+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 60 ~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 334444444444444432 123444555555555555554 33333333355555555555555544444456666666
Q ss_pred EEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCC
Q 047203 522 ILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLG 601 (698)
Q Consensus 522 ~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~ 601 (698)
+|++++|.+.+..+..+..+++| +.|++++|.+++..+..+..+++|+
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L--------------------------------~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNL--------------------------------TELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTC--------------------------------CEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCccCccCHHHhccCccC--------------------------------CEEECCCCCcCccCHHHhcCCccCC
Confidence 66666666554444444444444 5666666666656666667777888
Q ss_pred EEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeecCCCC
Q 047203 602 TLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKV 665 (698)
Q Consensus 602 ~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~ 665 (698)
+|++++|++++..+..+..+++|++|++++|.+. ..+++|+.++++.|.+.+.+|..
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCc
Confidence 8888888877666666777788888888888665 23557788888888888877754
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.4e-22 Score=206.04 Aligned_cols=253 Identities=18% Similarity=0.191 Sum_probs=171.4
Q ss_pred CCEEEccCCcCCCCCCccccCc--cCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccc-cCccccccCCCcEEE
Q 047203 375 LTDLDISFNSLNGSVPKSIGNL--QQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGE-IPDSIGCLLSVRFLI 451 (698)
Q Consensus 375 L~~L~L~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~ 451 (698)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 556666666554 2233334 6677777777766654444 34577777777777776644 455566777888888
Q ss_pred ccCCeeeeeCCCCCCCCCCCCEEEcCCC-cCcccCchhhhhcCCCCcEEEccCC-ccccc-CChhhccCC-CCCEEECCC
Q 047203 452 LCNNHISGEVPPSLKNCSMMDSLDLGDN-QLSGNIPAWIGESMPSLSILRLRSN-YFNGT-IPPELCKLS-ALHILDLSH 527 (698)
Q Consensus 452 l~~~~~~~~~~~~l~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~ 527 (698)
+++|.+++..+..+..+++|++|++++| .+++......+..+++|+.|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888776555666777888888888888 5654322333444888888888888 77643 456677888 888888888
Q ss_pred Cc--Cc-cCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCc-CCccCChhhhccCCCCEE
Q 047203 528 NN--LS-GFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNN-LSGEMPVELTRLIHLGTL 603 (698)
Q Consensus 528 ~~--~~-~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~l~~l~~L~~L 603 (698)
|. ++ +.+|..+. .+++|++|++++|. +++..+..+.++++|++|
T Consensus 205 ~~~~~~~~~l~~~~~--------------------------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 205 YRKNLQKSDLSTLVR--------------------------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp CGGGSCHHHHHHHHH--------------------------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred CcccCCHHHHHHHHh--------------------------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 84 33 22233333 34455888888888 666777788888999999
Q ss_pred eCCCCc-ccccCCccccCCCCCCeEeccCCcccccCCcCccCC-CCCCeEecccceeeecCCCCCc
Q 047203 604 NLSQNH-LVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSL-TFMNHLNLSYNNLSGEIPKVNQ 667 (698)
Q Consensus 604 ~l~~n~-~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~p~~~~ 667 (698)
++++|. +.......+..+++|++|++++| +. .+.+..+ .+|+.|++++|++.+..|....
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccCCccc
Confidence 999995 44333346788899999999998 33 2234444 3477777899999988876543
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=1.2e-22 Score=208.19 Aligned_cols=105 Identities=24% Similarity=0.231 Sum_probs=52.2
Q ss_pred EEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCC----ccccCcc-CCcEEEeeCCccccCcCccCCCC-----CC
Q 047203 353 LYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVP----KSIGNLQ-QLLTLVISNNNLSGEIPQLWSNI-----SS 422 (698)
Q Consensus 353 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~ 422 (698)
.+++++.+.+.++... ...++|++|++++|.+.+... ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4455555554444332 224446666666666654443 4445555 56666666666554433333332 55
Q ss_pred ccEEEcccCccccccCcccc----cc-CCCcEEEccCCeee
Q 047203 423 LYILDMSNNTLSGEIPDSIG----CL-LSVRFLILCNNHIS 458 (698)
Q Consensus 423 L~~L~L~~n~~~~~~~~~~~----~~-~~L~~L~l~~~~~~ 458 (698)
|++|++++|.+.+..+..+. .+ ++|++|++++|.++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 55555555555543333222 22 45555555555544
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=4.5e-21 Score=187.87 Aligned_cols=210 Identities=21% Similarity=0.247 Sum_probs=144.1
Q ss_pred cCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCE
Q 047203 394 GNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDS 473 (698)
Q Consensus 394 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 473 (698)
..+++|+.|++++|.+.. . ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 345556666666555542 1 2245566666666666665542 24566667777777777666555555667777777
Q ss_pred EEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcc
Q 047203 474 LDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVE 553 (698)
Q Consensus 474 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~ 553 (698)
|++++|++. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 114 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--------- 183 (272)
T 3rfs_A 114 LVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL--------- 183 (272)
T ss_dssp EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC---------
T ss_pred EECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccC---------
Confidence 777777776 4444444457777777777777775555566777888888888887776655555555555
Q ss_pred cccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCc
Q 047203 554 YEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNK 633 (698)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~ 633 (698)
+.|++++|.+++..+..+..+++|+.|++++|.+.. .+++|+.++++.|.
T Consensus 184 -----------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 184 -----------------------KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINK 233 (272)
T ss_dssp -----------------------CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHH
T ss_pred -----------------------CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHh
Confidence 778888888887777778888899999999988763 35678888999999
Q ss_pred ccccCCcCccCCCC
Q 047203 634 LSGSIPPSMVSLTF 647 (698)
Q Consensus 634 ~~~~~~~~l~~l~~ 647 (698)
+.+.+|.++.+++.
T Consensus 234 ~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 234 HSGVVRNSAGSVAP 247 (272)
T ss_dssp TGGGBBCTTSCBCG
T ss_pred CCCcccCcccccCC
Confidence 88888888776654
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=1.7e-22 Score=209.21 Aligned_cols=189 Identities=17% Similarity=0.204 Sum_probs=101.1
Q ss_pred cccCCCcEEEccCCeeee----eCCCCCCCCCCCCEEEcCCCcCcccCchhhhh---cC---------CCCcEEEccCCc
Q 047203 442 GCLLSVRFLILCNNHISG----EVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGE---SM---------PSLSILRLRSNY 505 (698)
Q Consensus 442 ~~~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~---~l---------~~L~~L~l~~~~ 505 (698)
..+++|++|++++|.++. ..+..+..+++|++|++++|.+.+..+..+.. .+ ++|+.|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 344555555555555443 12334445555555555555554322222211 12 566666666666
Q ss_pred ccc-cCC---hhhccCCCCCEEECCCCcCccC-----CCcccccccCCCcCCCCCcccccceEEeecccceeeecccccc
Q 047203 506 FNG-TIP---PELCKLSALHILDLSHNNLSGF-----IPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLV 576 (698)
Q Consensus 506 ~~~-~~~---~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 576 (698)
+.. ..+ ..+..+++|++|++++|.+... .|..+. .+++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~--------------------------------~~~~L 218 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--------------------------------YCQEL 218 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG--------------------------------GCTTC
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh--------------------------------cCCCc
Confidence 542 222 2445566666666666655421 111222 23333
Q ss_pred CeEEcCCCcCC----ccCChhhhccCCCCEEeCCCCccccc----CCccccC--CCCCCeEeccCCcccc----cCCcCc
Q 047203 577 NLMDLSSNNLS----GEMPVELTRLIHLGTLNLSQNHLVGK----IPTQIGK--LEWLESLDLSKNKLSG----SIPPSM 642 (698)
Q Consensus 577 ~~l~l~~n~~~----~~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~--l~sL~~L~l~~~~~~~----~~~~~l 642 (698)
+.|++++|.++ ..++..+..+++|++|+|++|.+++. ++.++.. +++|++|++++|.+.. .+|..+
T Consensus 219 ~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 219 KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp CEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred cEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 66666666664 34555666667777777777776644 3444432 6677777777777665 355555
Q ss_pred -cCCCCCCeEecccceeeecC
Q 047203 643 -VSLTFMNHLNLSYNNLSGEI 662 (698)
Q Consensus 643 -~~l~~L~~L~l~~n~~~~~~ 662 (698)
.++++|++|++++|++.+..
T Consensus 299 ~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 299 DEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHCTTCCEEECTTSBSCTTS
T ss_pred HhcCCCceEEEccCCcCCcch
Confidence 44677777777777766544
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=5.6e-21 Score=191.18 Aligned_cols=203 Identities=25% Similarity=0.266 Sum_probs=120.7
Q ss_pred ccCCcEEEeeCCccccCcCccC--CCCCCccEEEcccCccccccC----ccccccCCCcEEEccCCeeeeeCCCCCCCCC
Q 047203 396 LQQLLTLVISNNNLSGEIPQLW--SNISSLYILDMSNNTLSGEIP----DSIGCLLSVRFLILCNNHISGEVPPSLKNCS 469 (698)
Q Consensus 396 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 469 (698)
+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 3557777777776665555555 666777777777777664322 2233567777777777777656666677777
Q ss_pred CCCEEEcCCCcCccc--Cc-hhhhhcCCCCcEEEccCCcccccCCh----hhccCCCCCEEECCCCcCccCCCccccccc
Q 047203 470 MMDSLDLGDNQLSGN--IP-AWIGESMPSLSILRLRSNYFNGTIPP----ELCKLSALHILDLSHNNLSGFIPSCVGNFS 542 (698)
Q Consensus 470 ~L~~L~L~~n~~~~~--~~-~~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 542 (698)
+|++|++++|++.+. ++ ......+++|++|++++|.++. ++. .+..+++|++|++++|.+.+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~-------- 240 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATV-------- 240 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCC--------
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccc--------
Confidence 777777777775431 11 1111235556666666665541 111 1344555555555555554433
Q ss_pred CCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhcc---CCCCEEeCCCCcccccCCcccc
Q 047203 543 RMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRL---IHLGTLNLSQNHLVGKIPTQIG 619 (698)
Q Consensus 543 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~~~~~~~~l~ 619 (698)
|..+..+ ++|++|++++|+++ .+|..+.
T Consensus 241 ------------------------------------------------p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~ 271 (310)
T 4glp_A 241 ------------------------------------------------NPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP 271 (310)
T ss_dssp ------------------------------------------------CSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC
T ss_pred ------------------------------------------------hhhHHhccCcCcCCEEECCCCCCC-chhhhhc
Confidence 3333333 46777777777766 5555553
Q ss_pred CCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeee
Q 047203 620 KLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSG 660 (698)
Q Consensus 620 ~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 660 (698)
++|++|++++|.+.+. |. +..+++|+.|++++|++++
T Consensus 272 --~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 --AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp --SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred --CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 6777777777777743 33 5667777777777777654
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.1e-20 Score=179.48 Aligned_cols=209 Identities=20% Similarity=0.257 Sum_probs=166.8
Q ss_pred CCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCc-ccccCCccccCCCCCcEEECCC-CCCC
Q 047203 12 NCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTND-LQGDIPDGFSSLNSLQQLDLTG-NSFL 89 (698)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~ 89 (698)
+..++.+|. .+ +++++|++++|.+++..+.+|..+++|++|++++|. +....+.+|.++++|++|++++ |.+
T Consensus 20 c~~l~~ip~-~~----~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l- 93 (239)
T 2xwt_C 20 CKDIQRIPS-LP----PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL- 93 (239)
T ss_dssp ECSCSSCCC-CC----TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-
T ss_pred ccCccccCC-CC----CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-
Confidence 334666665 22 589999999999998777789999999999999997 8877778899999999999998 774
Q ss_pred CcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCC-cccccCCccccCCCCCc-EEEccCcee
Q 047203 90 GGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFN-QLTGDLPNSLGYLKNLR-YLELWDNSF 167 (698)
Q Consensus 90 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~l~~L~-~L~l~~~~~ 167 (698)
....+..|.++++|++|++++|.++.... +..+. +++.|++|++++| .++...+..|..+++|+ +|++++|.+
T Consensus 94 ~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~---~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 94 TYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVY---STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp CEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCC---BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred eEcCHHHhCCCCCCCEEeCCCCCCccccc--ccccc---ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 44445678999999999999999886432 43333 2222449999999 99988888899999999 999999999
Q ss_pred eecCCCCCcCcccCCeeeccCcc-cCccc-cccCCC-CCCcEEEccCCeeeeecCchhhcCCCCccEEeccc
Q 047203 168 VGSIPPSIGNLTFLKELYLSSNQ-MNGFP-ESFGQL-SAIEVLDLDENQWEGIITETHFRNLSNLKEISLYK 236 (698)
Q Consensus 168 ~~~~~~~l~~l~~L~~L~l~~~~-~~~~~-~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 236 (698)
....+..+.. ++|++|++++|+ ++.++ ..+..+ ++|+.|++++|.+... +.. .+++|+.|.+.+
T Consensus 169 ~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 169 TSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK---GLEHLKELIARN 235 (239)
T ss_dssp CEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT---TCTTCSEEECTT
T ss_pred cccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Chh---HhccCceeeccC
Confidence 8444444444 899999999995 98865 568888 9999999999998753 332 577888888765
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=2.5e-21 Score=196.76 Aligned_cols=255 Identities=16% Similarity=0.131 Sum_probs=191.0
Q ss_pred CccEEEcccCcccccCCcchhcCC--CCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccC-cCccCCCCCCccE
Q 047203 349 NVTKLYLNNNSFSGPIPRDFGQKI--PFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGE-IPQLWSNISSLYI 425 (698)
Q Consensus 349 ~L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 425 (698)
..+.++++++.+.. .. ...+ +.++.+++++|.+.+..+. +..+++|+.|++++|.+... .+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~~---~~-~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLHP---DV-TGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCCH---HH-HHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCCH---HH-HHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 35677777766542 22 2224 7899999999988765544 45689999999999987754 6667888999999
Q ss_pred EEcccCccccccCccccccCCCcEEEccCC-eeeee-CCCCCCCCCCCCEEEcCCC-cCcccCchhhhhcCC-CCcEEEc
Q 047203 426 LDMSNNTLSGEIPDSIGCLLSVRFLILCNN-HISGE-VPPSLKNCSMMDSLDLGDN-QLSGNIPAWIGESMP-SLSILRL 501 (698)
Q Consensus 426 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~-~L~~L~l 501 (698)
|++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++......+..++ +|+.|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999988777777888999999999999 56532 4445778899999999999 887542233344588 9999999
Q ss_pred cCCc--cc-ccCChhhccCCCCCEEECCCCc-CccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccC
Q 047203 502 RSNY--FN-GTIPPELCKLSALHILDLSHNN-LSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVN 577 (698)
Q Consensus 502 ~~~~--~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 577 (698)
++|. ++ +.++..+..+++|++|++++|. +++..+..+..+++| +
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L--------------------------------~ 250 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL--------------------------------Q 250 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC--------------------------------C
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC--------------------------------C
Confidence 9994 44 3466678889999999999998 665555555555555 8
Q ss_pred eEEcCCCc-CCccCChhhhccCCCCEEeCCCCcccccCCccccCC-CCCCeEeccCCcccccCCcCccC
Q 047203 578 LMDLSSNN-LSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKL-EWLESLDLSKNKLSGSIPPSMVS 644 (698)
Q Consensus 578 ~l~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~sL~~L~l~~~~~~~~~~~~l~~ 644 (698)
.|++++|. +.+.....+.++++|+.|++++| ++. +.+..+ .+++.|++++|.+.+..|..+..
T Consensus 251 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 251 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred EeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 89999994 44333346888999999999999 443 234444 34788889999999888887765
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=2.7e-20 Score=178.71 Aligned_cols=132 Identities=20% Similarity=0.208 Sum_probs=74.1
Q ss_pred cCCcEEEeeCCccccCcCccCCCCCCccEEEcccCc-cccccCccccccCCCcEEEccC-CeeeeeCCCCCCCCCCCCEE
Q 047203 397 QQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNT-LSGEIPDSIGCLLSVRFLILCN-NHISGEVPPSLKNCSMMDSL 474 (698)
Q Consensus 397 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L 474 (698)
++++.|++++|.+.+..+..|..+++|++|++++|. +..+.+..|..+++|++|++++ |.++...+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 366666666666665555566666666666666665 5555555566666666666665 56654444555566666666
Q ss_pred EcCCCcCcccCchhhhhcCCCCc---EEEccCC-cccccCChhhccCCCCC-EEECCCCcCc
Q 047203 475 DLGDNQLSGNIPAWIGESMPSLS---ILRLRSN-YFNGTIPPELCKLSALH-ILDLSHNNLS 531 (698)
Q Consensus 475 ~L~~n~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~ 531 (698)
++++|++. .+|. +..+++|+ .|++++| .+.+..+..|..+++|+ +|++++|.+.
T Consensus 111 ~l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 111 GIFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred eCCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 66666655 3443 22344454 5555555 44433333444555555 5555544443
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=2.5e-19 Score=173.24 Aligned_cols=177 Identities=25% Similarity=0.282 Sum_probs=109.3
Q ss_pred cceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEEC
Q 047203 4 SLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDL 83 (698)
Q Consensus 4 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 83 (698)
..++++++++++..+|...+ +++++|++++|.+++..+.+|..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~----~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP----ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCCCC----CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45677888888877776433 57888888888887777777888888888888888887777777778888888888
Q ss_pred CCCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEcc
Q 047203 84 TGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELW 163 (698)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 163 (698)
++|.+ ....+..|..+++|++|++++|+++......|..+. +|++|++++|.++...+..+..+++|++|+++
T Consensus 91 ~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 91 ANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcc-cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCC------cccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 88774 334445566777777777777766654443333333 45555555554444444444444444444444
Q ss_pred CceeeecCCCCCcCcccCCeeeccCccc
Q 047203 164 DNSFVGSIPPSIGNLTFLKELYLSSNQM 191 (698)
Q Consensus 164 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 191 (698)
+|.+.+..+..+..+++|++|++++|.+
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 4444433333344444444444444443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=2.2e-20 Score=186.92 Aligned_cols=203 Identities=22% Similarity=0.223 Sum_probs=115.7
Q ss_pred CcceEEeCCCCCCCCCCCCCCC-CCCCCCcEEECCCCCCCCCCC----ccccCCCCCCEEEcccCcccccCCccccCCCC
Q 047203 3 RSLVELHLPNCNLPIPPFHFPS-LNFTSLQVLDLSNNGFNSKIP----HWLFNITRLSSLDLNTNDLQGDIPDGFSSLNS 77 (698)
Q Consensus 3 ~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 77 (698)
++|++|++++|.+.+......+ .++++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..|+++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 3466666666666544432222 556666666666666665333 23345666666666666666666666666666
Q ss_pred CcEEECCCCCCCCcc-c--chhccCCCCCCEEeCcCccCCCccch---hhccccccccCCCCcEEEccCCcccccCCccc
Q 047203 78 LQQLDLTGNSFLGGR-L--SRNLGKLCNLRTLKLSRNSISGEVSD---FINGLSECTNSSLLEKLELGFNQLTGDLPNSL 151 (698)
Q Consensus 78 L~~L~l~~~~~~~~~-~--~~~~~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~ 151 (698)
|++|++++|.+.... . ...+..+++|++|++++|+++..... .+..+. +|++|++++|.+++..|..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~------~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV------QPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC------CCSSEECTTSCCCCCCCSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC------CCCEEECCCCCCCccchhhH
Confidence 666666666632110 1 12234566666666666666532221 112222 56666666666665555555
Q ss_pred cCC---CCCcEEEccCceeeecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccCCeee
Q 047203 152 GYL---KNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWE 215 (698)
Q Consensus 152 ~~l---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 215 (698)
..+ ++|++|++++|.+. .+|..+. ++|++|++++|+++.+|. +..+++|+.|++++|.+.
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred HhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 554 46666666666666 4455443 566666666666666543 455666666666666553
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=2.4e-19 Score=173.25 Aligned_cols=180 Identities=21% Similarity=0.238 Sum_probs=109.0
Q ss_pred CCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEEC
Q 047203 446 SVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDL 525 (698)
Q Consensus 446 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 525 (698)
..++++++++.+. ..|..+. ++++.|++++|.+.+ ++...+..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 3445555555544 3333332 455555666555552 33222333566666666666665555555666666666666
Q ss_pred CCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeC
Q 047203 526 SHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNL 605 (698)
Q Consensus 526 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l 605 (698)
++|.+.+..+..+..+++| ++|++++|.+++..+..+..+++|++|++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L--------------------------------~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 138 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQL--------------------------------DKLYLGGNQLKSLPSGVFDRLTKLKELRL 138 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTC--------------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcccccChhHhcccCCC--------------------------------CEEEcCCCcCCCcChhHhccCCcccEEEC
Confidence 6666655544444444444 56666666666555555667777777777
Q ss_pred CCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeec
Q 047203 606 SQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGE 661 (698)
Q Consensus 606 ~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 661 (698)
++|++++..+..|..+++|++|++++|.+....++.+..+++|+.|++++|++...
T Consensus 139 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77777755555677777777777777777766666677777777777777777655
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=1.8e-21 Score=199.35 Aligned_cols=157 Identities=24% Similarity=0.222 Sum_probs=71.8
Q ss_pred EccCCcCCCCCCccccCccCCcEEEeeCCccccCcC----ccCCCCC-CccEEEcccCccccccCcccccc-----CCCc
Q 047203 379 DISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIP----QLWSNIS-SLYILDMSNNTLSGEIPDSIGCL-----LSVR 448 (698)
Q Consensus 379 ~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~-----~~L~ 448 (698)
+++.|.+.+..+..+...++|+.|++++|.+....+ ..|..++ +|++|++++|.+.+..+..+... ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 444454444333333333445555555555554333 3444454 55555555555554433333332 5555
Q ss_pred EEEccCCeeeeeCCCC----CCCC-CCCCEEEcCCCcCcccCchhhhh---c-CCCCcEEEccCCcccccC----Chhhc
Q 047203 449 FLILCNNHISGEVPPS----LKNC-SMMDSLDLGDNQLSGNIPAWIGE---S-MPSLSILRLRSNYFNGTI----PPELC 515 (698)
Q Consensus 449 ~L~l~~~~~~~~~~~~----l~~~-~~L~~L~L~~n~~~~~~~~~~~~---~-l~~L~~L~l~~~~~~~~~----~~~l~ 515 (698)
+|++++|.++...+.. +..+ ++|++|++++|++.+..+..+.. . +++|+.|++++|.+.+.. +..+.
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 163 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence 5555555554322221 2233 45555555555554333222211 1 235555555555554322 22223
Q ss_pred cCC-CCCEEECCCCcCccCCC
Q 047203 516 KLS-ALHILDLSHNNLSGFIP 535 (698)
Q Consensus 516 ~l~-~L~~L~l~~~~~~~~~~ 535 (698)
.++ +|++|++++|.+.+..+
T Consensus 164 ~~~~~L~~L~Ls~n~l~~~~~ 184 (362)
T 3goz_A 164 AIPANVNSLNLRGNNLASKNC 184 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCH
T ss_pred cCCccccEeeecCCCCchhhH
Confidence 333 55555555555554443
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.8e-19 Score=179.53 Aligned_cols=192 Identities=24% Similarity=0.327 Sum_probs=122.0
Q ss_pred CCcceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEE
Q 047203 2 LRSLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQL 81 (698)
Q Consensus 2 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 81 (698)
+++|++|+++++.+..++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+.+. ..+.++++|++|
T Consensus 40 l~~L~~L~l~~~~i~~l~---~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccCch---hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 456777777777766654 345667777777777777643 33 66777777777777776642 256677777777
Q ss_pred ECCCCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEE
Q 047203 82 DLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLE 161 (698)
Q Consensus 82 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 161 (698)
++++|.+. .. ..+..+++|++|++++|.++.... +. .+++|++|++++|.+++..+ +..+++|++|+
T Consensus 113 ~l~~n~l~--~~-~~l~~l~~L~~L~l~~n~l~~~~~--l~------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~ 179 (308)
T 1h6u_A 113 DLTSTQIT--DV-TPLAGLSNLQVLYLDLNQITNISP--LA------GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179 (308)
T ss_dssp ECTTSCCC--CC-GGGTTCTTCCEEECCSSCCCCCGG--GG------GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred ECCCCCCC--Cc-hhhcCCCCCCEEECCCCccCcCcc--cc------CCCCccEEEccCCcCCCChh--hcCCCCCCEEE
Confidence 77777642 12 236677777777777776664432 22 23367777777776664332 66677777777
Q ss_pred ccCceeeecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccCCeeee
Q 047203 162 LWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEG 216 (698)
Q Consensus 162 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 216 (698)
+++|.+.+..+ +..+++|++|++++|.++.++. +..+++|+.|++++|.+..
T Consensus 180 l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 180 ADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEEC
T ss_pred CCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeec
Confidence 77776653322 6666777777777777766553 6667777777777776643
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=2e-19 Score=179.28 Aligned_cols=194 Identities=20% Similarity=0.316 Sum_probs=115.0
Q ss_pred ccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCC
Q 047203 393 IGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMD 472 (698)
Q Consensus 393 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 472 (698)
...+++|+.|++++|.+.. .+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3457788888888887763 33 46667777777777777765433 66677777777777776532 3566667777
Q ss_pred EEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCc
Q 047203 473 SLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSV 552 (698)
Q Consensus 473 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~ 552 (698)
+|++++|++. .++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+
T Consensus 111 ~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l----------- 172 (308)
T 1h6u_A 111 TLDLTSTQIT-DVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANL----------- 172 (308)
T ss_dssp EEECTTSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTC-----------
T ss_pred EEECCCCCCC-Cchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCC-----------
Confidence 7777777766 3333 3346667777776666653322 5666666666666666553221 2222
Q ss_pred ccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCC
Q 047203 553 EYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKN 632 (698)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~ 632 (698)
++|+.|++++|.+++..+ +..+++|++|++++|++++.. .+..+++|++|++++|
T Consensus 173 ---------------------~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 173 ---------------------SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ 227 (308)
T ss_dssp ---------------------TTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE
T ss_pred ---------------------CCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC
Confidence 233555565555553322 555555555555555555332 2455555555555555
Q ss_pred ccc
Q 047203 633 KLS 635 (698)
Q Consensus 633 ~~~ 635 (698)
.+.
T Consensus 228 ~i~ 230 (308)
T 1h6u_A 228 TIT 230 (308)
T ss_dssp EEE
T ss_pred eee
Confidence 554
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=2.2e-21 Score=200.95 Aligned_cols=253 Identities=19% Similarity=0.206 Sum_probs=178.4
Q ss_pred CCCCCCEEEccCCcCCCCC----CccccCccCCcEEEeeCCccc---cCcCcc-------CCCCCCccEEEcccCcccc-
Q 047203 371 KIPFLTDLDISFNSLNGSV----PKSIGNLQQLLTLVISNNNLS---GEIPQL-------WSNISSLYILDMSNNTLSG- 435 (698)
Q Consensus 371 ~~~~L~~L~L~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~---~~~~~~-------~~~l~~L~~L~L~~n~~~~- 435 (698)
.+++|++|++++|.+.... ...+..+++|+.|++++|.+. +..|.. +..+++|++|++++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 3677888888888776532 233566788888888886443 222322 3677888888888888876
Q ss_pred ---ccCccccccCCCcEEEccCCeeeeeCCCC----CCCC---------CCCCEEEcCCCcCcc-cCch--hhhhcCCCC
Q 047203 436 ---EIPDSIGCLLSVRFLILCNNHISGEVPPS----LKNC---------SMMDSLDLGDNQLSG-NIPA--WIGESMPSL 496 (698)
Q Consensus 436 ---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~---------~~L~~L~L~~n~~~~-~~~~--~~~~~l~~L 496 (698)
..+..+..+++|++|++++|.++...+.. +..+ ++|++|++++|++.+ .++. ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 34556677888999999888876333322 3333 889999999999873 3332 233458899
Q ss_pred cEEEccCCcccc-----cCChhhccCCCCCEEECCCCcCc----cCCCcccccccCCCcCCCCCcccccceEEeecccce
Q 047203 497 SILRLRSNYFNG-----TIPPELCKLSALHILDLSHNNLS----GFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQY 567 (698)
Q Consensus 497 ~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~ 567 (698)
+.|++++|.+.. ..+..+..+++|++|++++|.++ ..+|..+..+++
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~------------------------ 245 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN------------------------ 245 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT------------------------
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC------------------------
Confidence 999999998873 23337788999999999999886 334444444444
Q ss_pred eeeccccccCeEEcCCCcCCcc----CChhhhc--cCCCCEEeCCCCcccc----cCCccc-cCCCCCCeEeccCCcccc
Q 047203 568 VFYSTLYLVNLMDLSSNNLSGE----MPVELTR--LIHLGTLNLSQNHLVG----KIPTQI-GKLEWLESLDLSKNKLSG 636 (698)
Q Consensus 568 ~~~~~~~~L~~l~l~~n~~~~~----~~~~l~~--l~~L~~L~l~~n~~~~----~~~~~l-~~l~sL~~L~l~~~~~~~ 636 (698)
|+.|++++|.+++. ++..+.. +++|+.|+|++|.+++ .+|..+ ..+++|++|++++|.+..
T Consensus 246 --------L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 246 --------LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp --------CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred --------cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 48899999999865 4556644 8999999999999997 477777 558999999999999986
Q ss_pred cCC--cCcc-CCCCCCeEeccc
Q 047203 637 SIP--PSMV-SLTFMNHLNLSY 655 (698)
Q Consensus 637 ~~~--~~l~-~l~~L~~L~l~~ 655 (698)
..+ ..+. .+++++.+.+..
T Consensus 318 ~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 318 EDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp TSHHHHHHHHHHHHHTCCEECC
T ss_pred chhHHHHHHHHhhhcCcchhhh
Confidence 653 3332 345555555544
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1.2e-17 Score=169.93 Aligned_cols=241 Identities=20% Similarity=0.182 Sum_probs=149.1
Q ss_pred ccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCc-CccCCCCCCccE-EE
Q 047203 350 VTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEI-PQLWSNISSLYI-LD 427 (698)
Q Consensus 350 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~ 427 (698)
-+.++.++++++ .+|..+ .+++++|++++|+++.....+|.++++|+.|++++|.+.+.+ +..|.+++++.+ +.
T Consensus 11 ~~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 11 NRVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TTEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CCEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 356777777776 556544 456788888888877655566777888888888888765443 346777777665 44
Q ss_pred cccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCC-cCcccCchhhhhcC-CCCcEEEccCCc
Q 047203 428 MSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDN-QLSGNIPAWIGESM-PSLSILRLRSNY 505 (698)
Q Consensus 428 L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n-~~~~~~~~~~~~~l-~~L~~L~l~~~~ 505 (698)
+.+|++..+.+..|..+++|++|++++|.+....+..+.....+..+++.++ .+. .++...+.++ ..++.|++++|.
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~ 165 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNG 165 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhcccccc
Confidence 4557777666777777777888877777776555555556666777777553 444 5554444333 356777777777
Q ss_pred ccccCChhhccCCCCCEEECCCC-cCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCC
Q 047203 506 FNGTIPPELCKLSALHILDLSHN-NLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSN 584 (698)
Q Consensus 506 ~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n 584 (698)
+.. ++.......+|++++++++ .+....+..+..+++| ++||+++|
T Consensus 166 i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L--------------------------------~~LdLs~N 212 (350)
T 4ay9_X 166 IQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP--------------------------------VILDISRT 212 (350)
T ss_dssp CCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECC--------------------------------SEEECTTS
T ss_pred ccC-CChhhccccchhHHhhccCCcccCCCHHHhccCccc--------------------------------chhhcCCC
Confidence 763 3333344556777777653 3333333344444444 66777777
Q ss_pred cCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCC
Q 047203 585 NLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKN 632 (698)
Q Consensus 585 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~ 632 (698)
.++...+.. +.+|+.|.+.++.....+| .+..+++|+.+++.++
T Consensus 213 ~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 213 RIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred CcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 776433322 3455566655555444555 3566777777777654
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=162.84 Aligned_cols=160 Identities=23% Similarity=0.222 Sum_probs=114.6
Q ss_pred CEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCC-hhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCC
Q 047203 472 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIP-PELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPD 550 (698)
Q Consensus 472 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~ 550 (698)
+.+++++|.+. .+|..+ .+.++.|++++|.+.+..+ ..|..+++|++|++++|.+.+..+..+.++++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L------ 83 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV------ 83 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC------
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC------
Confidence 35666666655 455433 3355667777776665433 346677777777777777766655555555555
Q ss_pred CcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEecc
Q 047203 551 SVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLS 630 (698)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~ 630 (698)
++|++++|.+++..+..|.++++|++|++++|++++..|..|..+++|++|+++
T Consensus 84 --------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 84 --------------------------NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp --------------------------CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECT
T ss_pred --------------------------CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECC
Confidence 677777777776777778888888888888888887778888888888888888
Q ss_pred CCcccccCCcCccCCCCCCeEecccceeeecCCCCCc
Q 047203 631 KNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIPKVNQ 667 (698)
Q Consensus 631 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~~~ 667 (698)
+|.+....|..|..+++|+.|++++|++....+..+.
T Consensus 138 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l 174 (220)
T 2v70_A 138 DNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWL 174 (220)
T ss_dssp TSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHH
T ss_pred CCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHH
Confidence 8888877788888888888888888888876654443
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=8.2e-18 Score=171.15 Aligned_cols=241 Identities=18% Similarity=0.094 Sum_probs=177.6
Q ss_pred CeEECCCCCCcCCCCCcccCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCC-CCccccCccCCcE-EEeeCC
Q 047203 330 GTVDLSSNSFEGPLPLWSFNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGS-VPKSIGNLQQLLT-LVISNN 407 (698)
Q Consensus 330 ~~l~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~-L~l~~~ 407 (698)
++++.+++.++......+.++++|++++|.+. .++...+.++++|++|+|++|++.+. ...+|.+++++.. +.+..|
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 46777788887765556778999999999988 56655556699999999999988653 3456788888765 555667
Q ss_pred ccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccC-CeeeeeCCCCCCCCC-CCCEEEcCCCcCcccC
Q 047203 408 NLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCN-NHISGEVPPSLKNCS-MMDSLDLGDNQLSGNI 485 (698)
Q Consensus 408 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~-~L~~L~L~~n~~~~~~ 485 (698)
++....+..|..+++|++|++++|++....+..+.....+..+++.+ +.+....+..|..+. .++.|++++|++. .+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EE
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CC
Confidence 88877788899999999999999998876666666677788888866 456655556676664 5888999999988 67
Q ss_pred chhhhhcCCCCcEEEccC-CcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecc
Q 047203 486 PAWIGESMPSLSILRLRS-NYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKG 564 (698)
Q Consensus 486 ~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~ 564 (698)
+...+. .++|+.+++.+ |.+....+..|..+++|++|++++|.++...+..+.++++|
T Consensus 170 ~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L-------------------- 228 (350)
T 4ay9_X 170 HNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL-------------------- 228 (350)
T ss_dssp CTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEE--------------------
T ss_pred Chhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHh--------------------
Confidence 777665 67899999976 44553334567889999999999998886655555444444
Q ss_pred cceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCc
Q 047203 565 TQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNH 609 (698)
Q Consensus 565 ~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 609 (698)
.+.++.-...+| .+..+++|+.+++.++.
T Consensus 229 ---------------~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 229 ---------------RARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp ---------------ECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred ---------------hhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 333333333555 47788899999998764
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=1.7e-17 Score=155.35 Aligned_cols=180 Identities=24% Similarity=0.243 Sum_probs=146.2
Q ss_pred eEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCC
Q 047203 6 VELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG 85 (698)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 85 (698)
+.+++.++++..+|... .++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~----~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI----PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC----CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 46777788887777533 36899999999999977777889999999999999999977777789999999999999
Q ss_pred CCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCc
Q 047203 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDN 165 (698)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 165 (698)
|.+ ....+..+.++++|++|++++|.++......+..+. +|++|++++|.+++..+..+..+++|++|++++|
T Consensus 86 n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 86 NQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CcC-CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC------cCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 984 344455678999999999999998877666665555 7999999999888777777888999999999988
Q ss_pred eeeecCCCCCcCcccCCeeeccCcccCc-cccccCCCCC
Q 047203 166 SFVGSIPPSIGNLTFLKELYLSSNQMNG-FPESFGQLSA 203 (698)
Q Consensus 166 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~l~~l~~ 203 (698)
.+. +.+++|++|++..|.++. +|.+++.++.
T Consensus 159 ~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 159 PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred Cee-------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 554 355688888888888876 7877776654
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.2e-17 Score=156.28 Aligned_cols=81 Identities=22% Similarity=0.189 Sum_probs=43.4
Q ss_pred CeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccc
Q 047203 577 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 656 (698)
Q Consensus 577 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 656 (698)
++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+. ..+++|+.|+++.|
T Consensus 103 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n 175 (208)
T 2o6s_A 103 KELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWIN 175 (208)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHH
T ss_pred CEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHH
Confidence 44444445444444444555555666666665555444444555556666666665443 23445566666666
Q ss_pred eeeecCCC
Q 047203 657 NLSGEIPK 664 (698)
Q Consensus 657 ~~~~~~p~ 664 (698)
.+.+.+|.
T Consensus 176 ~~~g~ip~ 183 (208)
T 2o6s_A 176 KHSGVVRN 183 (208)
T ss_dssp HCTTTBBC
T ss_pred hCCceeec
Confidence 66665553
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=3.4e-17 Score=154.21 Aligned_cols=156 Identities=21% Similarity=0.264 Sum_probs=112.8
Q ss_pred CEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCC
Q 047203 472 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDS 551 (698)
Q Consensus 472 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~ 551 (698)
+.++++++.+. .+|..+ .++++.|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L------- 82 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL------- 82 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSC-------
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCC-------
Confidence 35566666655 555543 3567777777777765555567777777777777777776666666655555
Q ss_pred cccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccC
Q 047203 552 VEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSK 631 (698)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~ 631 (698)
+.|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++
T Consensus 83 -------------------------~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 83 -------------------------NSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp -------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred -------------------------CEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence 6677777777766666677788888888888888877778888888888888888
Q ss_pred CcccccCCcCccCCCCCCeEecccceeeecCC
Q 047203 632 NKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIP 663 (698)
Q Consensus 632 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 663 (698)
|.+....++.+..+++|+.|++++|++....+
T Consensus 138 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 138 NKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 88887777778888888888888888876443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=6e-17 Score=159.76 Aligned_cols=78 Identities=28% Similarity=0.416 Sum_probs=41.7
Q ss_pred CeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccc
Q 047203 577 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 656 (698)
Q Consensus 577 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 656 (698)
+.|++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.. +| .+..+++|+.|++++|
T Consensus 137 ~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 137 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQ 210 (291)
T ss_dssp CEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEE
T ss_pred CEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCC
Confidence 4555555555433 345555556666666665553322 5555566666666665553 22 2555566666666666
Q ss_pred eeee
Q 047203 657 NLSG 660 (698)
Q Consensus 657 ~~~~ 660 (698)
++..
T Consensus 211 ~i~~ 214 (291)
T 1h6t_A 211 ECLN 214 (291)
T ss_dssp EEEC
T ss_pred cccC
Confidence 5543
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=5.5e-17 Score=160.06 Aligned_cols=186 Identities=27% Similarity=0.323 Sum_probs=146.9
Q ss_pred EeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCC
Q 047203 8 LHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNS 87 (698)
Q Consensus 8 L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 87 (698)
+.+....+.+. .....+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +.++++|++|++++|.
T Consensus 29 ~~l~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 29 DNLKKKSVTDA---VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHTTCSCTTSE---ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHhcCCCcccc---cchhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 34444444332 2334678899999999988754 4 48889999999999999886544 8899999999999998
Q ss_pred CCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCcee
Q 047203 88 FLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSF 167 (698)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~ 167 (698)
+. . ...+..+++|++|++++|+++.. ..+. .+++|+.|++++|.+++. ..+..+++|++|++++|.+
T Consensus 102 l~--~-~~~l~~l~~L~~L~L~~n~i~~~--~~l~------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 102 VK--D-LSSLKDLKKLKSLSLEHNGISDI--NGLV------HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp CC--C-GGGGTTCTTCCEEECTTSCCCCC--GGGG------GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred CC--C-ChhhccCCCCCEEECCCCcCCCC--hhhc------CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 52 2 34588999999999999988764 2233 344899999999998865 6788899999999999998
Q ss_pred eecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccCCeeee
Q 047203 168 VGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEG 216 (698)
Q Consensus 168 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 216 (698)
.+..+ +..+++|++|++++|.++.++. +..+++|+.|++++|.+..
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence 85543 8889999999999999988864 8889999999999998764
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=9.3e-17 Score=152.36 Aligned_cols=156 Identities=25% Similarity=0.314 Sum_probs=123.8
Q ss_pred CCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCC
Q 047203 471 MDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPD 550 (698)
Q Consensus 471 L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~ 550 (698)
-+.++.+++.+. .+|..+ +++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L------ 90 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL------ 90 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC------
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCc------
Confidence 345666666665 666544 4678888888888877777778888888888888888765555555555555
Q ss_pred CcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEecc
Q 047203 551 SVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLS 630 (698)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~ 630 (698)
+.|++++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 91 --------------------------~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~ 143 (229)
T 3e6j_A 91 --------------------------TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143 (229)
T ss_dssp --------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECC
T ss_pred --------------------------CEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECC
Confidence 77888888888777777888999999999999988 778888889999999999
Q ss_pred CCcccccCCcCccCCCCCCeEecccceeeecCC
Q 047203 631 KNKLSGSIPPSMVSLTFMNHLNLSYNNLSGEIP 663 (698)
Q Consensus 631 ~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 663 (698)
+|.+....+..+..+++|+.|++++|++....+
T Consensus 144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999987777778889999999999999887665
No 104
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.8e-16 Score=149.24 Aligned_cols=151 Identities=25% Similarity=0.281 Sum_probs=90.6
Q ss_pred eEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCC
Q 047203 6 VELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG 85 (698)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 85 (698)
+.+++++++++.+|...+ +++++|++++|.+++..+..|..+++|++|++++|.+.+..|.+|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~~l~----~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP----ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC----TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC----cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 356666677766665332 5677777777777766666677777777777777777766677777777777777777
Q ss_pred CCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCc
Q 047203 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDN 165 (698)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 165 (698)
|.+ ....+..|.++++|++|++++|.++...+..|..+. +|++|++++|.++...+..|..+++|++|++++|
T Consensus 90 N~l-~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NKI-TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLH------NLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcC-CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCC------CCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 763 223333456666666666666666554444443333 4555555555554444444444455555555544
Q ss_pred ee
Q 047203 166 SF 167 (698)
Q Consensus 166 ~~ 167 (698)
.+
T Consensus 163 ~~ 164 (220)
T 2v9t_B 163 PF 164 (220)
T ss_dssp CE
T ss_pred Cc
Confidence 44
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=9.3e-17 Score=171.54 Aligned_cols=187 Identities=25% Similarity=0.398 Sum_probs=116.2
Q ss_pred CCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcC
Q 047203 398 QLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLG 477 (698)
Q Consensus 398 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~ 477 (698)
+++.|++++|.+.+ +|..+ .++|++|++++|.+.. ++ ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888775 44433 2678888888887773 33 345777777777777764 444 443 77777777
Q ss_pred CCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccc
Q 047203 478 DNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGS 557 (698)
Q Consensus 478 ~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~ 557 (698)
+|.+.+ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. +
T Consensus 129 ~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~--------------- 180 (571)
T 3cvr_A 129 NNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--E--------------- 180 (571)
T ss_dssp SSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--T---------------
T ss_pred CCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--C---------------
Confidence 777763 555 26777777777777764 443 45677777777776664 332 21 2
Q ss_pred eEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCC-------CEEeCCCCcccccCCccccCCCCCCeEecc
Q 047203 558 LQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHL-------GTLNLSQNHLVGKIPTQIGKLEWLESLDLS 630 (698)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L-------~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~ 630 (698)
+|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+++
T Consensus 181 -----------------~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 181 -----------------SLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238 (571)
T ss_dssp -----------------TCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECC
T ss_pred -----------------CCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEee
Confidence 2366666666666 3443 332 44 66666666666 455555556666666666
Q ss_pred CCcccccCCcCccCC
Q 047203 631 KNKLSGSIPPSMVSL 645 (698)
Q Consensus 631 ~~~~~~~~~~~l~~l 645 (698)
+|.+.+..|..+..+
T Consensus 239 ~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 239 DNPLSSRIRESLSQQ 253 (571)
T ss_dssp SSSCCHHHHHHHHHH
T ss_pred CCcCCCcCHHHHHHh
Confidence 666665555555443
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.70 E-value=2.8e-16 Score=167.81 Aligned_cols=182 Identities=26% Similarity=0.316 Sum_probs=152.1
Q ss_pred cceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEEC
Q 047203 4 SLVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDL 83 (698)
Q Consensus 4 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 83 (698)
+|+.|++++++++++|... +++|++|+|++|.++ .+| ..+++|++|++++|.+.+ +|. +.+ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL----PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC----CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhH----cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 7899999999999888633 388999999999998 566 468999999999999987 666 665 9999999
Q ss_pred CCCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEcc
Q 047203 84 TGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELW 163 (698)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 163 (698)
++|.+. .++. .+++|++|++++|.++.+.. .+++|++|++++|.+++ +|. +. ++|++|+++
T Consensus 128 s~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp~----------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 128 DNNQLT--MLPE---LPALLEYINADNNQLTMLPE----------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp CSSCCS--CCCC---CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCcCC--CCCC---cCccccEEeCCCCccCcCCC----------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 999953 2554 68999999999999986443 23489999999999986 555 65 899999999
Q ss_pred CceeeecCCCCCcCcccC-------CeeeccCcccCccccccCCCCCCcEEEccCCeeeeecCc
Q 047203 164 DNSFVGSIPPSIGNLTFL-------KELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEGIITE 220 (698)
Q Consensus 164 ~~~~~~~~~~~l~~l~~L-------~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 220 (698)
+|.+. .+|. +.. +| ++|++++|.++.+|..+..+++|+.|++++|.+.+..+.
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 99998 6666 554 77 999999999999999998999999999999998875554
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=6.9e-17 Score=164.97 Aligned_cols=177 Identities=27% Similarity=0.220 Sum_probs=100.4
Q ss_pred cEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCcccc-CCCCCcEEECCCCCCCCcccchhccCCCCCCEEeCc
Q 047203 31 QVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFS-SLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLS 109 (698)
Q Consensus 31 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (698)
++++++++.++. +|..+. +.+++|++++|.+.+..+..|. ++++|++|++++|.+ ....+..|.++++|++|+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i-~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC-CEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC-CccChhhccCCCCCCEEECC
Confidence 345555555542 333322 2355555555555544444444 555555555555552 22233345555555555555
Q ss_pred CccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCC---cCcccCCeeec
Q 047203 110 RNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSI---GNLTFLKELYL 186 (698)
Q Consensus 110 ~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l 186 (698)
+|+++......|..+. +|++|++++|.+....+..|..+++|++|++++|.+...-+..+ ..+++|++|++
T Consensus 97 ~N~l~~~~~~~~~~l~------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQ------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp SSCCCEECTTTTTTCT------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CCcCCcCCHHHhCCCc------CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 5555544444444443 56666666666665666677777777777777777764333333 45777888888
Q ss_pred cCcccCccc-cccCCCCC--CcEEEccCCeeeee
Q 047203 187 SSNQMNGFP-ESFGQLSA--IEVLDLDENQWEGI 217 (698)
Q Consensus 187 ~~~~~~~~~-~~l~~l~~--L~~L~l~~~~~~~~ 217 (698)
++|.++.+| ..+..++. ++.|++++|.+...
T Consensus 171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 888777765 34555665 37788888877654
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=3.4e-16 Score=147.34 Aligned_cols=151 Identities=25% Similarity=0.306 Sum_probs=82.7
Q ss_pred EEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCC-ccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCC
Q 047203 7 ELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIP-HWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG 85 (698)
Q Consensus 7 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 85 (698)
.++++++.++.+|...+ +.+++|++++|.+++..+ ..|..+++|++|++++|.+.+..+.+|.++++|++|++++
T Consensus 15 ~l~~s~n~l~~iP~~~~----~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP----QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCSSCCSCCC----TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcccCccCCC----CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 45566666655554221 345566666666654432 3455666666666666666555555566666666666666
Q ss_pred CCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCc
Q 047203 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDN 165 (698)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~ 165 (698)
|.+ ....+..|.++++|++|++++|+++. ..+..|..+++|++|++++|
T Consensus 91 N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------------~~~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 91 NRL-ENVQHKMFKGLESLKTLMLRSNRITC------------------------------VGNDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp SCC-CCCCGGGGTTCSSCCEEECTTSCCCC------------------------------BCTTSSTTCTTCSEEECTTS
T ss_pred Ccc-CccCHhHhcCCcCCCEEECCCCcCCe------------------------------ECHhHcCCCccCCEEECCCC
Confidence 652 23333445555555555555555544 44455555555555555555
Q ss_pred eeeecCCCCCcCcccCCeeeccCcccC
Q 047203 166 SFVGSIPPSIGNLTFLKELYLSSNQMN 192 (698)
Q Consensus 166 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 192 (698)
.+.+..|..|..+++|++|++++|.+.
T Consensus 140 ~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 140 QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 555444555555555555555555543
No 109
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=3.7e-17 Score=164.81 Aligned_cols=264 Identities=13% Similarity=0.038 Sum_probs=161.2
Q ss_pred cCccEEEcccCcccccCCcchhcCCCCCCEEEccCCcCC--CCCCccccCccCCcEEEeeCCccccCcCccCCC------
Q 047203 348 FNVTKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLN--GSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSN------ 419 (698)
Q Consensus 348 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------ 419 (698)
.+++.|.+++.--. .....+...+++|+.|+|++|++. ..... .++.++.+.+..+. ....+|.+
T Consensus 25 ~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETTEE
T ss_pred CceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhcccccccc
Confidence 35667766653211 111112122677788888777765 11111 12223334444432 22345555
Q ss_pred --CCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCc---ccCchhhhhcCC
Q 047203 420 --ISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLS---GNIPAWIGESMP 494 (698)
Q Consensus 420 --l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~---~~~~~~~~~~l~ 494 (698)
+++|+++++.. .+..+....|..+++|++++++++.+..+.+.+|.++.++..+........ ..+....+.++.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 66666666666 555555566666666777777666665566666666665555554442210 011222222233
Q ss_pred --------------------------CCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCC
Q 047203 495 --------------------------SLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEP 548 (698)
Q Consensus 495 --------------------------~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~ 548 (698)
++..+.+.+.-...........+++|+++++++|.+..+.+..|.++++|
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L---- 252 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL---- 252 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC----
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC----
Confidence 34444444332111111111247889999999888887777777776666
Q ss_pred CCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCC-EEeCCCCcccccCCccccCCCCCCeE
Q 047203 549 PDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLG-TLNLSQNHLVGKIPTQIGKLEWLESL 627 (698)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~sL~~L 627 (698)
+++++++| +....+.+|.+|++|+ .+++.+ .++...+.+|.++++|+++
T Consensus 253 ----------------------------~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 253 ----------------------------LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp ----------------------------CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred ----------------------------CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 77888887 7777888899999998 999988 7776777889999999999
Q ss_pred eccCCcccccCCcCccCCCCCCeEec
Q 047203 628 DLSKNKLSGSIPPSMVSLTFMNHLNL 653 (698)
Q Consensus 628 ~l~~~~~~~~~~~~l~~l~~L~~L~l 653 (698)
++++|.+....+..|..+++|+.++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999888888888999999988864
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=5.6e-16 Score=167.57 Aligned_cols=171 Identities=27% Similarity=0.345 Sum_probs=91.5
Q ss_pred ccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCE
Q 047203 443 CLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHI 522 (698)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 522 (698)
.++.|+.|++++|.+.. . ..+..+++|+.|+|++|++.+ ++. +..+++|+.|++++|.+.+ + +.+..+++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~-l-~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-C-TTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred cCCCCCEEECcCCCCCC-C-hHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 34455555555555432 1 234555555555555555552 222 2235555666665555543 2 24555666666
Q ss_pred EECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCE
Q 047203 523 LDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGT 602 (698)
Q Consensus 523 L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~ 602 (698)
|++++|.+.+. ..+.. +++|+.|++++|.+++. ..+..+++|+.
T Consensus 114 L~Ls~N~l~~l--~~l~~--------------------------------l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 157 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVH--------------------------------LPQLESLYLGNNKITDI--TVLSRLTKLDT 157 (605)
T ss_dssp EECTTSCCCCC--GGGGG--------------------------------CTTCSEEECCSSCCCCC--GGGGSCTTCSE
T ss_pred EEecCCCCCCC--ccccC--------------------------------CCccCEEECCCCccCCc--hhhcccCCCCE
Confidence 66666655431 11222 23335566666666543 45566666666
Q ss_pred EeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeee
Q 047203 603 LNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSG 660 (698)
Q Consensus 603 L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 660 (698)
|+|++|.+.+..| +..+++|++|+|++|.+... | .+..+++|+.|+|++|++.+
T Consensus 158 L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEEC
T ss_pred EECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcC
Confidence 6666666664433 56666666666666666532 2 45666666666666666654
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=2.5e-16 Score=145.75 Aligned_cols=153 Identities=14% Similarity=0.206 Sum_probs=95.3
Q ss_pred CCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCc
Q 047203 467 NCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKI 546 (698)
Q Consensus 467 ~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 546 (698)
.+++|++|++++|.+. .++ . +..+++|+.|++++|.+. .++.+..+++|++|++++|.+.+..+..+..+++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-- 114 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL-- 114 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC--
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCC--
Confidence 3445555555555554 344 2 223566666666666443 12355666666666666666665545444444444
Q ss_pred CCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCc-ccccCCccccCCCCCC
Q 047203 547 EPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNH-LVGKIPTQIGKLEWLE 625 (698)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~sL~ 625 (698)
+.|++++|.+++..+..+..+++|++|++++|+ ++ .++ .+..+++|+
T Consensus 115 ------------------------------~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~ 162 (197)
T 4ezg_A 115 ------------------------------TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELK 162 (197)
T ss_dssp ------------------------------CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCC
T ss_pred ------------------------------CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCC
Confidence 667777777766666777778888888888887 54 444 577788888
Q ss_pred eEeccCCcccccCCcCccCCCCCCeEecccceeee
Q 047203 626 SLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSG 660 (698)
Q Consensus 626 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 660 (698)
+|++++|.+.. ++ .+..+++|+.|++++|++.+
T Consensus 163 ~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 163 SLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred EEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 88888888774 33 67778888888888887653
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=2.9e-16 Score=160.29 Aligned_cols=176 Identities=26% Similarity=0.312 Sum_probs=110.3
Q ss_pred cEEEcccCcccccCCcchhcCCCCCCEEEccCCcCCCCCCcccc-CccCCcEEEeeCCccccCcCccCCCCCCccEEEcc
Q 047203 351 TKLYLNNNSFSGPIPRDFGQKIPFLTDLDISFNSLNGSVPKSIG-NLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMS 429 (698)
Q Consensus 351 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 429 (698)
+.++++++.+. .+|..+ .+.++.|++++|.++......+. .+++|+.|++++|.+....+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34555555554 344332 33466666666666655454554 56667777777776665555666667777777777
Q ss_pred cCccccccCccccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhh---hcCCCCcEEEccCCcc
Q 047203 430 NNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG---ESMPSLSILRLRSNYF 506 (698)
Q Consensus 430 ~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~---~~l~~L~~L~l~~~~~ 506 (698)
+|.+....+..|..+++|++|++++|.+....+..|..+++|+.|++++|++. .+|...+ ..+++|+.|++++|.+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCC
Confidence 77766655556666677777777777776666666777777777777777766 4555554 3366777777777777
Q ss_pred cccCChhhccCCC--CCEEECCCCcCc
Q 047203 507 NGTIPPELCKLSA--LHILDLSHNNLS 531 (698)
Q Consensus 507 ~~~~~~~l~~l~~--L~~L~l~~~~~~ 531 (698)
....+..+..++. ++.|++++|++.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 6544455666665 366777776654
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=4.3e-16 Score=168.49 Aligned_cols=189 Identities=26% Similarity=0.322 Sum_probs=137.2
Q ss_pred ceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECC
Q 047203 5 LVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLT 84 (698)
Q Consensus 5 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 84 (698)
+..+++....+.+.. ....+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..| +..+++|++|+++
T Consensus 23 l~~l~l~~~~i~~~~---~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAV---TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHTTCSCTTSEE---CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHhccCCCccccc---chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 334455555554433 34467788888888888764 33 47788888888888888776544 7888888888888
Q ss_pred CCCCCCcccchhccCCCCCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccC
Q 047203 85 GNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWD 164 (698)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 164 (698)
+|.+. .+..+..+++|++|++++|.+.... .+ ..+++|+.|++++|.+++. ..+..+++|++|++++
T Consensus 96 ~N~l~---~l~~l~~l~~L~~L~Ls~N~l~~l~--~l------~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 96 ENKIK---DLSSLKDLKKLKSLSLEHNGISDIN--GL------VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLED 162 (605)
T ss_dssp SSCCC---CCTTSTTCTTCCEEECTTSCCCCCG--GG------GGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCS
T ss_pred CCCCC---CChhhccCCCCCEEEecCCCCCCCc--cc------cCCCccCEEECCCCccCCc--hhhcccCCCCEEECcC
Confidence 88752 2346778888888888888777531 22 3344788888888888755 5678888888888888
Q ss_pred ceeeecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccCCeeee
Q 047203 165 NSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDENQWEG 216 (698)
Q Consensus 165 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 216 (698)
|.+.+..| +..+++|++|++++|.+..++ .+..+++|+.|++++|.+..
T Consensus 163 N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 163 NQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred CcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 88875544 778888888888888888774 57788888888888888765
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=1.5e-15 Score=143.97 Aligned_cols=149 Identities=26% Similarity=0.306 Sum_probs=62.5
Q ss_pred cEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEEeCcC
Q 047203 31 QVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSR 110 (698)
Q Consensus 31 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (698)
+.++.+++.++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+ ....+..|..+++|++|++++
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 34444444444 2233222 4455555555555544444455555555555555542 222223344455555555555
Q ss_pred ccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeeccCcc
Q 047203 111 NSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQ 190 (698)
Q Consensus 111 ~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 190 (698)
|.++......|..+. +|++|++++|.++ .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 98 N~l~~l~~~~~~~l~------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLV------HLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCT------TCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcch------hhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 544433222222222 2333333333333 223334444444444444444443333334444444444444443
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=6.4e-16 Score=142.99 Aligned_cols=154 Identities=21% Similarity=0.302 Sum_probs=111.2
Q ss_pred CCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCC
Q 047203 25 LNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLR 104 (698)
Q Consensus 25 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 104 (698)
.++++|++|++++|.+. .++ .+..+++|++|++++|.+.. +..+.++++|++|++++|.+ ....+..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l-~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDV-TSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTC-BGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCcc-CcccChhhcCCCCCC
Confidence 46677888888888887 345 57788888888888886552 34677888888888888873 334566778888888
Q ss_pred EEeCcCccCCCccchhhccccccccCCCCcEEEccCCc-ccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCe
Q 047203 105 TLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQ-LTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKE 183 (698)
Q Consensus 105 ~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 183 (698)
+|++++|.+++..+..+..++ +|++|++++|. ++.. + .+..+++|++|++++|.+.+ .+ .+..+++|++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~------~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~ 185 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLP------KVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQ 185 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCS------SCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCE
T ss_pred EEEecCCccCcHhHHHHhhCC------CCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCE
Confidence 888888887765555555444 78888888887 5533 3 67888888888888888874 33 6788888888
Q ss_pred eeccCcccCc
Q 047203 184 LYLSSNQMNG 193 (698)
Q Consensus 184 L~l~~~~~~~ 193 (698)
|++++|++..
T Consensus 186 L~l~~N~i~~ 195 (197)
T 4ezg_A 186 LYAFSQTIGG 195 (197)
T ss_dssp EEECBC----
T ss_pred EEeeCcccCC
Confidence 8888887653
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=4.2e-16 Score=151.09 Aligned_cols=79 Identities=27% Similarity=0.349 Sum_probs=47.9
Q ss_pred CeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccc
Q 047203 577 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 656 (698)
Q Consensus 577 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 656 (698)
+.|++++|.+++. ..+..+++|+.|++++|++++. ..+..+++|++|++++|.+... ..+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 109 SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred cEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 5555666655532 2456666666666666666643 2456666666666666666644 45666666666666666
Q ss_pred eeeec
Q 047203 657 NLSGE 661 (698)
Q Consensus 657 ~~~~~ 661 (698)
++...
T Consensus 183 ~~~~~ 187 (263)
T 1xeu_A 183 KCVNE 187 (263)
T ss_dssp EEECC
T ss_pred cccCC
Confidence 66543
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=4e-16 Score=151.22 Aligned_cols=169 Identities=22% Similarity=0.318 Sum_probs=99.7
Q ss_pred CCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEE
Q 047203 27 FTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTL 106 (698)
Q Consensus 27 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 106 (698)
+.+++.++++++.+++. + .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. ..+. +.++++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~--~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS--DLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC--CCGG-GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC--CChh-hccCCCCCEE
Confidence 44455555555555532 2 35556666666666665553 23 4555666666666666531 1222 5566666666
Q ss_pred eCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeec
Q 047203 107 KLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYL 186 (698)
Q Consensus 107 ~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 186 (698)
++++|++++... +.. ++|++|++++|.+++. ..+..+++|++|++++|++.+. + .++.+++|++|++
T Consensus 91 ~L~~N~l~~l~~--~~~-------~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-------ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL 157 (263)
T ss_dssp ECCSSCCSCCTT--CCC-------SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred ECCCCccCCcCc--ccc-------CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence 666666554321 111 3566666666666643 3466677777777777776643 2 4667777777777
Q ss_pred cCcccCccccccCCCCCCcEEEccCCeeee
Q 047203 187 SSNQMNGFPESFGQLSAIEVLDLDENQWEG 216 (698)
Q Consensus 187 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 216 (698)
++|.++.+ ..+..+++|+.|++++|.+..
T Consensus 158 ~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 158 HGNEITNT-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSCCCBC-TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCcCcch-HHhccCCCCCEEeCCCCcccC
Confidence 77777766 566677777777777777654
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=1.1e-15 Score=140.42 Aligned_cols=128 Identities=26% Similarity=0.318 Sum_probs=70.6
Q ss_pred CEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCCh-hhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCC
Q 047203 472 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPP-ELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPD 550 (698)
Q Consensus 472 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~ 550 (698)
++++++++.+. .+|..+ .++++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+.++++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L------ 80 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI------ 80 (192)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC------
T ss_pred CEEEcCCCCcC-cCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccC------
Confidence 56666666665 555543 23666666666666544432 35666666666666666555545444444444
Q ss_pred CcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEecc
Q 047203 551 SVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLS 630 (698)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~ 630 (698)
++|++++|.+++..+..|.++++|++|++++|++++..|..+..+++|++|+++
T Consensus 81 --------------------------~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 81 --------------------------QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp --------------------------CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred --------------------------CEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 455555555555555445555555555555555555555555555555555555
Q ss_pred CCccc
Q 047203 631 KNKLS 635 (698)
Q Consensus 631 ~~~~~ 635 (698)
+|.+.
T Consensus 135 ~N~l~ 139 (192)
T 1w8a_A 135 SNPFN 139 (192)
T ss_dssp TCCBC
T ss_pred CCCcc
Confidence 55554
No 119
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=3.1e-14 Score=146.16 Aligned_cols=240 Identities=8% Similarity=0.079 Sum_probs=178.2
Q ss_pred CCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEcc
Q 047203 374 FLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILC 453 (698)
Q Consensus 374 ~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 453 (698)
+|+.+.+.++ +......+|.++ +|+.+.+.. .+......+|.++++|+.+++.+|.+..+....|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 6888888765 555566677764 688888886 55556667888899999999988888877677776 4889999988
Q ss_pred CCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCc--
Q 047203 454 NNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLS-- 531 (698)
Q Consensus 454 ~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-- 531 (698)
.+ +..+...+|.+|++|+.+++.++ +. .+....|.+ .+|+.+.+. +.+.......|.+|++|+.+++.++.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 55 66577788889999999998875 44 667777765 788988884 4455566678888999999998877654
Q ss_pred ---cCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCC
Q 047203 532 ---GFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQN 608 (698)
Q Consensus 532 ---~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 608 (698)
...+..|.+|++ |+.+++. +++......+|.+|++|+.++|.++
T Consensus 287 ~~~~I~~~aF~~c~~--------------------------------L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPK--------------------------------LARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TTCEECTTTTTTCTT--------------------------------CCEECCC-TTCCEECTTTTTTCCSCCEEEECTT
T ss_pred cccEECHHHhhCCcc--------------------------------CCeEEeC-CceEEEhhhhhcCCCCccEEEECcc
Confidence 233334444444 4777777 4466677778888888888888655
Q ss_pred cccccCCccccCCCCCCeEeccCCcccccCCcCccCCC-CCCeEecccce
Q 047203 609 HLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLT-FMNHLNLSYNN 657 (698)
Q Consensus 609 ~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~n~ 657 (698)
++.....+|.++ +|+++++++|......+..|..++ +++.|++-.+.
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 665667888888 888888888888777777777774 77888877664
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=2.6e-15 Score=151.26 Aligned_cols=222 Identities=10% Similarity=0.002 Sum_probs=155.2
Q ss_pred CCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCcc----ccccCccccccCCC
Q 047203 372 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTL----SGEIPDSIGCLLSV 447 (698)
Q Consensus 372 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~----~~~~~~~~~~~~~L 447 (698)
+++|+++++.+ .+......+|.++++|+.+++++|.+....+.+|..+.++..+....... .......|..+..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888887 77766667788888888888888877766677787777777666655322 12223345555566
Q ss_pred c-EEEccCCeee-eeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEEC
Q 047203 448 R-FLILCNNHIS-GEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDL 525 (698)
Q Consensus 448 ~-~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 525 (698)
+ .+.+...... ......-....++..+.+.++-.. .....+..++++|+.+++.+|.++......|.++++|+++++
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 5 3444322110 000011123445566666554222 122233345899999999999988777778999999999999
Q ss_pred CCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccC-eEEcCCCcCCccCChhhhccCCCCEEe
Q 047203 526 SHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVN-LMDLSSNNLSGEMPVELTRLIHLGTLN 604 (698)
Q Consensus 526 ~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~l~~l~~L~~L~ 604 (698)
.++ +..+.+..|.++++| + .+++.+ .++.+.+.+|.+|++|+.++
T Consensus 258 ~~n-i~~I~~~aF~~~~~L--------------------------------~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 258 PHN-LKTIGQRVFSNCGRL--------------------------------AGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp CTT-CCEECTTTTTTCTTC--------------------------------CEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred Ccc-cceehHHHhhCChhc--------------------------------cEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 987 666666677776666 7 888888 77778889999999999999
Q ss_pred CCCCcccccCCccccCCCCCCeEec
Q 047203 605 LSQNHLVGKIPTQIGKLEWLESLDL 629 (698)
Q Consensus 605 l~~n~~~~~~~~~l~~l~sL~~L~l 629 (698)
+++|.++...+.+|.++++|+.++.
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred eCCCccCccchhhhcCCcchhhhcc
Confidence 9999999888899999999999874
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.57 E-value=1.1e-17 Score=179.92 Aligned_cols=84 Identities=33% Similarity=0.370 Sum_probs=40.3
Q ss_pred CeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccC-CcCccCCCCCCeEeccc
Q 047203 577 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSI-PPSMVSLTFMNHLNLSY 655 (698)
Q Consensus 577 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~ 655 (698)
+.|++++|.++ .+|..+.++++|+.|++++|.+++ +| .+..+++|++|++++|.+.... |..+..+++|+.|++++
T Consensus 466 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 466 THLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp CEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTT
T ss_pred cEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecC
Confidence 44444444444 344444445555555555555442 33 4444555555555555544333 44455555555555555
Q ss_pred ceeeecCC
Q 047203 656 NNLSGEIP 663 (698)
Q Consensus 656 n~~~~~~p 663 (698)
|++.+..|
T Consensus 543 N~l~~~~~ 550 (567)
T 1dce_A 543 NSLCQEEG 550 (567)
T ss_dssp SGGGGSSS
T ss_pred CcCCCCcc
Confidence 55444433
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=1.5e-14 Score=132.89 Aligned_cols=132 Identities=22% Similarity=0.297 Sum_probs=87.0
Q ss_pred cEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCc-ccccccCCCcCCCCCcccccceEEeecccceeeeccccc
Q 047203 497 SILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPS-CVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYL 575 (698)
Q Consensus 497 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (698)
+.++++++.+. .+|..+. ++|++|++++|.+.+..+. .+..+++|
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L------------------------------- 56 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL------------------------------- 56 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC-------------------------------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCC-------------------------------
Confidence 56677777665 4444332 2677777777776655443 24444444
Q ss_pred cCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEeccc
Q 047203 576 VNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSY 655 (698)
Q Consensus 576 L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 655 (698)
+.|++++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|.+....|+.+..+++|+.|++++
T Consensus 57 -~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 57 -VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp -CEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred -CEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 6677777777766666777777777777777777766666677777777777777777766677777777777777777
Q ss_pred ceeeecCC
Q 047203 656 NNLSGEIP 663 (698)
Q Consensus 656 n~~~~~~p 663 (698)
|++.+..|
T Consensus 136 N~l~c~c~ 143 (192)
T 1w8a_A 136 NPFNCNCH 143 (192)
T ss_dssp CCBCCSGG
T ss_pred CCccCcCc
Confidence 77765544
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.1e-14 Score=131.05 Aligned_cols=133 Identities=25% Similarity=0.221 Sum_probs=95.7
Q ss_pred CCCCcEEEccCCccc-ccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeec
Q 047203 493 MPSLSILRLRSNYFN-GTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYS 571 (698)
Q Consensus 493 l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (698)
+++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 69 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------------- 69 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence 456777777777765 45566667777777777777776543 33333
Q ss_pred cccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccC-CccccCCCCCCeEeccCCcccccCC---cCccCCCC
Q 047203 572 TLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKI-PTQIGKLEWLESLDLSKNKLSGSIP---PSMVSLTF 647 (698)
Q Consensus 572 ~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~sL~~L~l~~~~~~~~~~---~~l~~l~~ 647 (698)
+++|+.|++++|.+++..|..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+....+ ..+..+++
T Consensus 70 -l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 70 -LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp -CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred -CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 334477788888887667777777888888888888887532 2677888888888888888885544 47788888
Q ss_pred CCeEecccceee
Q 047203 648 MNHLNLSYNNLS 659 (698)
Q Consensus 648 L~~L~l~~n~~~ 659 (698)
|+.|++++|++.
T Consensus 149 L~~L~l~~n~~~ 160 (168)
T 2ell_A 149 LTYLDGYDREDQ 160 (168)
T ss_dssp CCEETTEETTSC
T ss_pred CcEecCCCCChh
Confidence 888888888664
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.55 E-value=1.8e-17 Score=178.22 Aligned_cols=123 Identities=22% Similarity=0.245 Sum_probs=106.1
Q ss_pred CCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccc
Q 047203 494 PSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTL 573 (698)
Q Consensus 494 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (698)
..|+.|++++|.+++ +|. +..+++|++|++++|.+. .+|..+.++++|
T Consensus 441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L----------------------------- 488 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCL----------------------------- 488 (567)
T ss_dssp TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTC-----------------------------
T ss_pred cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCC-----------------------------
Confidence 369999999999985 565 999999999999999998 667777776666
Q ss_pred cccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccC-CccccCCCCCCeEeccCCcccccCCcC---ccCCCCCC
Q 047203 574 YLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKI-PTQIGKLEWLESLDLSKNKLSGSIPPS---MVSLTFMN 649 (698)
Q Consensus 574 ~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~sL~~L~l~~~~~~~~~~~~---l~~l~~L~ 649 (698)
+.|++++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|.+.+..|.. +..+++|+
T Consensus 489 ---~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 489 ---EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp ---CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred ---CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 899999999996 66 8999999999999999999776 999999999999999999999665432 23489999
Q ss_pred eEec
Q 047203 650 HLNL 653 (698)
Q Consensus 650 ~L~l 653 (698)
.|++
T Consensus 564 ~L~l 567 (567)
T 1dce_A 564 SILT 567 (567)
T ss_dssp EEEC
T ss_pred ccCC
Confidence 9874
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=2.5e-13 Score=139.44 Aligned_cols=245 Identities=10% Similarity=0.055 Sum_probs=185.6
Q ss_pred CCCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEE
Q 047203 371 KIPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFL 450 (698)
Q Consensus 371 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 450 (698)
.+..++.+.+.+. ++.....+|.++ +|+.+.+..+ +......+|.++ +|+.+.+.. .+..+....|..+++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 4577788887653 444555677765 7999998776 554566678774 699999886 5666667788888999999
Q ss_pred EccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcC
Q 047203 451 ILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNL 530 (698)
Q Consensus 451 ~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 530 (698)
++.++.+.......|. +.+|+.+.+.++ +. .++...|.++++|+.+++.++ +.......|.+ .+|+.+.+. +.+
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 9988888866666666 688999998855 44 677777878889999998775 44455556666 688888884 334
Q ss_pred ccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCC-----ccCChhhhccCCCCEEeC
Q 047203 531 SGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLS-----GEMPVELTRLIHLGTLNL 605 (698)
Q Consensus 531 ~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~-----~~~~~~l~~l~~L~~L~l 605 (698)
.......|.+|++| +.+++.++.+. ...+.+|.+|++|+.++|
T Consensus 260 ~~I~~~aF~~c~~L--------------------------------~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 260 TNIASRAFYYCPEL--------------------------------AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp CEECTTTTTTCTTC--------------------------------CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred cEEChhHhhCCCCC--------------------------------CEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 44455555555555 78888777664 467788999999999999
Q ss_pred CCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccceeeec
Q 047203 606 SQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYNNLSGE 661 (698)
Q Consensus 606 ~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 661 (698)
.+ .+......+|.++++|+.++|.++ +....+..|..+ +|+.+++.+|.....
T Consensus 308 ~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l 360 (401)
T 4fdw_A 308 PE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQV 360 (401)
T ss_dssp CT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBC
T ss_pred CC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccc
Confidence 94 577777899999999999999665 666778899999 999999999966543
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=1e-14 Score=128.22 Aligned_cols=129 Identities=23% Similarity=0.223 Sum_probs=100.8
Q ss_pred CCCCcEEEccCCccc-ccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeec
Q 047203 493 MPSLSILRLRSNYFN-GTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYS 571 (698)
Q Consensus 493 l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (698)
+++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 467888888888876 56677778888888888888877654 33333
Q ss_pred cccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCccccc-CCccccCCCCCCeEeccCCcccccCC---cCccCCCC
Q 047203 572 TLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGK-IPTQIGKLEWLESLDLSKNKLSGSIP---PSMVSLTF 647 (698)
Q Consensus 572 ~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~sL~~L~l~~~~~~~~~~---~~l~~l~~ 647 (698)
+++|+.|++++|.+++.+|..+..+++|++|++++|++++. .+..+..+++|++|++++|.+....+ ..+..+++
T Consensus 63 -l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 141 (149)
T 2je0_A 63 -LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQ 141 (149)
T ss_dssp -CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTT
T ss_pred -CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCC
Confidence 34448888888888877788888899999999999998853 34778889999999999999886655 57888999
Q ss_pred CCeEeccc
Q 047203 648 MNHLNLSY 655 (698)
Q Consensus 648 L~~L~l~~ 655 (698)
|+.|++++
T Consensus 142 L~~L~l~d 149 (149)
T 2je0_A 142 LTYLDGYD 149 (149)
T ss_dssp CCEETTBC
T ss_pred cccccCCC
Confidence 99998864
No 127
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=5.1e-13 Score=138.11 Aligned_cols=63 Identities=11% Similarity=0.011 Sum_probs=41.3
Q ss_pred CCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeE
Q 047203 586 LSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHL 651 (698)
Q Consensus 586 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L 651 (698)
++.....+|.+|++|+.+++..+ ++.....+|.++++|+++++..+-- .....|..+++|+.+
T Consensus 331 v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~~--~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 331 VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRLE--QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGGG--GGGGGBCTTCEEEEE
T ss_pred ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCCE--EhhheecCCCCCcEE
Confidence 33355567777778888877665 5556667777788888887765422 223457777777654
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=3.1e-14 Score=127.98 Aligned_cols=132 Identities=27% Similarity=0.258 Sum_probs=80.9
Q ss_pred CCCCcEEECCCCCCC-CCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCE
Q 047203 27 FTSLQVLDLSNNGFN-SKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRT 105 (698)
Q Consensus 27 ~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 105 (698)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+ ....+..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRI-FGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCC-CSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcC-chHHHHHHhhCCCCCE
Confidence 367888888888776 45677677788888888888877754 6677777888888887774 3335666666777777
Q ss_pred EeCcCccCCCccc-hhhccccccccCCCCcEEEccCCcccccCC---ccccCCCCCcEEEccCcee
Q 047203 106 LKLSRNSISGEVS-DFINGLSECTNSSLLEKLELGFNQLTGDLP---NSLGYLKNLRYLELWDNSF 167 (698)
Q Consensus 106 L~l~~~~~~~~~~-~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~---~~~~~l~~L~~L~l~~~~~ 167 (698)
|++++|.+++... ..+..+ ++|++|++++|.++...+ ..+..+++|++|++++|.+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l------~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKL------ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSC------SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcC------CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 7777776664321 222222 245555555554443322 2444444555555444443
No 129
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=6.6e-13 Score=137.24 Aligned_cols=159 Identities=11% Similarity=0.081 Sum_probs=92.4
Q ss_pred CCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCEEeCcCccCCCccch
Q 047203 40 FNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRTLKLSRNSISGEVSD 119 (698)
Q Consensus 40 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 119 (698)
++.+-..+|.+|.+|+.+++.. .+..+...+|.+|.+|+.+++.++ ........|.++.+|+.+.+..+ +..+...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecce
Confidence 4445566788888888888864 366566777888888888888654 22334556777777777666543 4444444
Q ss_pred hhccccccccCCCCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeeccCcccCcc-cccc
Q 047203 120 FINGLSECTNSSLLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGF-PESF 198 (698)
Q Consensus 120 ~l~~l~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~l 198 (698)
+|.... +........ +......+|.++++|+.+.+..+.. ......|.++.+|+.+++..+ ++.+ ...+
T Consensus 135 aF~~~~-------~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F 204 (394)
T 4fs7_A 135 AFKGCD-------FKEITIPEG-VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCF 204 (394)
T ss_dssp TTTTCC-------CSEEECCTT-CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTT
T ss_pred eeeccc-------ccccccCcc-ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhh
Confidence 444332 222222221 2224455677777777777765432 244456666777777766544 3332 3345
Q ss_pred CCCCCCcEEEccCC
Q 047203 199 GQLSAIEVLDLDEN 212 (698)
Q Consensus 199 ~~l~~L~~L~l~~~ 212 (698)
.++..|+.+.+..+
T Consensus 205 ~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 205 AECILLENMEFPNS 218 (394)
T ss_dssp TTCTTCCBCCCCTT
T ss_pred ccccccceeecCCC
Confidence 55566655555544
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.53 E-value=1.2e-13 Score=126.68 Aligned_cols=86 Identities=29% Similarity=0.301 Sum_probs=54.2
Q ss_pred CeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccc
Q 047203 577 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 656 (698)
Q Consensus 577 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 656 (698)
+.|++++|.+++..+..|.++++|++|++++|+++...+..|..+++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 57 ~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 44445555555455555666666666666666666555566666677777777777666555555666777777777777
Q ss_pred eeeecC
Q 047203 657 NLSGEI 662 (698)
Q Consensus 657 ~~~~~~ 662 (698)
++....
T Consensus 137 ~~~C~c 142 (193)
T 2wfh_A 137 PLYCDC 142 (193)
T ss_dssp CEECSG
T ss_pred CeecCC
Confidence 766533
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1.3e-13 Score=125.10 Aligned_cols=87 Identities=24% Similarity=0.229 Sum_probs=64.0
Q ss_pred CeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecccc
Q 047203 577 NLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSYN 656 (698)
Q Consensus 577 ~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 656 (698)
++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+....++.+..+++|+.|++++|
T Consensus 55 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 55 TKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp SEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 55555556665555555677778888888888887666666777888888888888887665666677888888888888
Q ss_pred eeeecCC
Q 047203 657 NLSGEIP 663 (698)
Q Consensus 657 ~~~~~~p 663 (698)
++.+..|
T Consensus 135 ~~~~~~~ 141 (177)
T 2o6r_A 135 PWDCSCP 141 (177)
T ss_dssp CBCCCHH
T ss_pred CeeccCc
Confidence 8877665
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=6.3e-14 Score=123.08 Aligned_cols=128 Identities=27% Similarity=0.259 Sum_probs=83.5
Q ss_pred CCCCcEEECCCCCCC-CCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCCCCCE
Q 047203 27 FTSLQVLDLSNNGFN-SKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLCNLRT 105 (698)
Q Consensus 27 ~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 105 (698)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+.+. ..+.++++|++|++++|.+ ....+..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRV-SGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCC-CSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcc-cchHHHHhhhCCCCCE
Confidence 366778888888776 55677777778888888887777755 6677777788888877774 3335666666777777
Q ss_pred EeCcCccCCCcc-chhhccccccccCCCCcEEEccCCcccccCC---ccccCCCCCcEEEcc
Q 047203 106 LKLSRNSISGEV-SDFINGLSECTNSSLLEKLELGFNQLTGDLP---NSLGYLKNLRYLELW 163 (698)
Q Consensus 106 L~l~~~~~~~~~-~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~---~~~~~l~~L~~L~l~ 163 (698)
|++++|.+++.. ...+..++ +|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~------~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLE------NLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCT------TCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCC------CCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777766432 12233222 56666666666654443 355666666666554
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.48 E-value=4.1e-13 Score=123.17 Aligned_cols=127 Identities=25% Similarity=0.307 Sum_probs=89.9
Q ss_pred CEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCC
Q 047203 472 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDS 551 (698)
Q Consensus 472 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~ 551 (698)
+.++++++.+. .+|..+ .++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+.++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L------- 80 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL------- 80 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC-------
Confidence 45666666665 555443 346777777777766 555667777777777777777776666556555555
Q ss_pred cccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccC
Q 047203 552 VEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSK 631 (698)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~ 631 (698)
++|++++|.+++..+..|.++++|+.|++++|.++...+..|..+++|+.|++++
T Consensus 81 -------------------------~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 81 -------------------------LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp -------------------------CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred -------------------------CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 6777777777777777788888888888888888855556677788888888888
Q ss_pred Cccc
Q 047203 632 NKLS 635 (698)
Q Consensus 632 ~~~~ 635 (698)
|.+.
T Consensus 136 N~~~ 139 (193)
T 2wfh_A 136 NPLY 139 (193)
T ss_dssp SCEE
T ss_pred CCee
Confidence 8775
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=1.9e-14 Score=159.90 Aligned_cols=142 Identities=27% Similarity=0.324 Sum_probs=75.2
Q ss_pred CCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCccccc
Q 047203 461 VPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGN 540 (698)
Q Consensus 461 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 540 (698)
.+..+..++.|+.|+|++|.+. .++..++. +++|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 3445555666666666666665 55555553 666666666666665 55555666666666666666665 44555554
Q ss_pred ccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccC
Q 047203 541 FSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGK 620 (698)
Q Consensus 541 l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 620 (698)
+++| +.|++++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..
T Consensus 292 l~~L--------------------------------~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 292 CFQL--------------------------------KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp GTTC--------------------------------SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CCCC--------------------------------CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 4444 55666666555 44555666666666666666665555544433
Q ss_pred CCC-CCeEeccCCcccccCC
Q 047203 621 LEW-LESLDLSKNKLSGSIP 639 (698)
Q Consensus 621 l~s-L~~L~l~~~~~~~~~~ 639 (698)
+.. +..+++++|.+...+|
T Consensus 339 ~~~~~~~l~l~~N~l~~~~p 358 (727)
T 4b8c_D 339 KSVTGLIFYLRDNRPEIPLP 358 (727)
T ss_dssp HHHHHHHHHHHHCCCCCCCC
T ss_pred cchhhhHHhhccCcccCcCc
Confidence 211 1124455555444443
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=1.6e-14 Score=160.46 Aligned_cols=154 Identities=23% Similarity=0.266 Sum_probs=54.0
Q ss_pred CCCCCEEEccCCcCCCCCCccccCccCCcEEEeeCCcccc---------CcCccCCCCCCccEEEcccCccccccCcccc
Q 047203 372 IPFLTDLDISFNSLNGSVPKSIGNLQQLLTLVISNNNLSG---------EIPQLWSNISSLYILDMSNNTLSGEIPDSIG 442 (698)
Q Consensus 372 ~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---------~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 442 (698)
-+.++.|++.++.+... +. ..++.++++.+.+.+ ..+..|..++.|+.|+|++|.+. .++..+.
T Consensus 172 ~~~~~~l~L~~n~~~~~-~~-----~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~ 244 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEA-NQ-----ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIF 244 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG
T ss_pred CCccceEEeeCCCCCcc-hh-----hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhc
Confidence 34566777776666532 11 122333333332221 23344555555555555555554 2233333
Q ss_pred ccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCE
Q 047203 443 CLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHI 522 (698)
Q Consensus 443 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 522 (698)
.+++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..+.. +++|+.|++++|.+. .+|..|..+++|++
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~-l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~ 320 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS-CFQLKYFYFFDNMVT-TLPWEFGNLCNLQF 320 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG-GTTCSEEECCSSCCC-CCCSSTTSCTTCCC
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC-CCCCCEEECCCCCCC-ccChhhhcCCCccE
Confidence 4455555555555544 44444444555555555555544 44444332 445555555555444 33444444555555
Q ss_pred EECCCCcCccCCCc
Q 047203 523 LDLSHNNLSGFIPS 536 (698)
Q Consensus 523 L~l~~~~~~~~~~~ 536 (698)
|+|++|.+.+.+|.
T Consensus 321 L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 321 LGVEGNPLEKQFLK 334 (727)
T ss_dssp EECTTSCCCSHHHH
T ss_pred EeCCCCccCCCChH
Confidence 55555544444333
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=7.4e-13 Score=120.01 Aligned_cols=130 Identities=22% Similarity=0.265 Sum_probs=83.9
Q ss_pred CEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCC
Q 047203 472 DSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDS 551 (698)
Q Consensus 472 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~ 551 (698)
+.++++++++. .+|..+ .++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L------- 78 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL------- 78 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC-------
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCcc-------
Confidence 45556666555 455332 3566666676666665544556666777777777776665544444444444
Q ss_pred cccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccC
Q 047203 552 VEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSK 631 (698)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~ 631 (698)
++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 79 -------------------------~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 79 -------------------------TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp -------------------------CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred -------------------------CEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 6677777777766666677777788888888877755455566777788888888
Q ss_pred Cccccc
Q 047203 632 NKLSGS 637 (698)
Q Consensus 632 ~~~~~~ 637 (698)
|.+...
T Consensus 134 N~~~~~ 139 (177)
T 2o6r_A 134 NPWDCS 139 (177)
T ss_dssp SCBCCC
T ss_pred CCeecc
Confidence 777643
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=3.8e-13 Score=121.71 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=55.7
Q ss_pred ccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCc--cccCCCCCCeEeccCCcccccCCcC----ccCCCCC
Q 047203 575 LVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPT--QIGKLEWLESLDLSKNKLSGSIPPS----MVSLTFM 648 (698)
Q Consensus 575 ~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~l~~l~sL~~L~l~~~~~~~~~~~~----l~~l~~L 648 (698)
+|+.|++++|.+++..+..+..+++|++|++++|.++ .+|. .+..+++|++|++++|.+. ..|.. +..+++|
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L 142 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQV 142 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTC
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCcc
Confidence 3356666666666444444577777777777777775 3443 6677777777777777776 34443 6777777
Q ss_pred CeEecccceeee
Q 047203 649 NHLNLSYNNLSG 660 (698)
Q Consensus 649 ~~L~l~~n~~~~ 660 (698)
+.|++++|+..+
T Consensus 143 ~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 143 RVLDFQKVKLKE 154 (176)
T ss_dssp SEETTEECCHHH
T ss_pred ceeCCCcCCHHH
Confidence 777777776654
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=8.3e-13 Score=119.46 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=77.1
Q ss_pred CCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCC
Q 047203 466 KNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMK 545 (698)
Q Consensus 466 ~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 545 (698)
..+++|++|++++|++. .++. +....++|+.|++++|.+.+. +.+..+++|++|++++|.+.+..+..+..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L- 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL- 90 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC-
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC-
Confidence 34455555555555555 3332 222234666666666665543 455666666666666666654433333333333
Q ss_pred cCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCCh--hhhccCCCCEEeCCCCcccccCCc----ccc
Q 047203 546 IEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPV--ELTRLIHLGTLNLSQNHLVGKIPT----QIG 619 (698)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~----~l~ 619 (698)
+.|++++|.++ .+|. .+..+++|+.|++++|+++ ..|. .+.
T Consensus 91 -------------------------------~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~ 137 (176)
T 1a9n_A 91 -------------------------------TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIY 137 (176)
T ss_dssp -------------------------------CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHH
T ss_pred -------------------------------CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHH
Confidence 66666666664 3333 5667777777777777776 3444 367
Q ss_pred CCCCCCeEeccCCccc
Q 047203 620 KLEWLESLDLSKNKLS 635 (698)
Q Consensus 620 ~l~sL~~L~l~~~~~~ 635 (698)
.+++|+.|++++|...
T Consensus 138 ~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 138 KVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HCTTCSEETTEECCHH
T ss_pred HCCccceeCCCcCCHH
Confidence 7777888877777665
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.34 E-value=2e-10 Score=118.58 Aligned_cols=134 Identities=10% Similarity=0.148 Sum_probs=91.5
Q ss_pred CCCccccCccCCcEEEeeCCccccCcCccCCCCCCccEEEcccCccccccCccccccCCCcEEEccCCeeeeeCCCCCCC
Q 047203 388 SVPKSIGNLQQLLTLVISNNNLSGEIPQLWSNISSLYILDMSNNTLSGEIPDSIGCLLSVRFLILCNNHISGEVPPSLKN 467 (698)
Q Consensus 388 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 467 (698)
....+|.++..|+.+.+.+.... ....+|.+++.|+.+.+.. .+..+....|..+.+|+.+.+.++ ++.+...+|.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 34456777888888888765443 5556788888888888863 444556677888888888888764 55566778888
Q ss_pred CCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEEECCCCc
Q 047203 468 CSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNN 529 (698)
Q Consensus 468 ~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 529 (698)
|.+|+.+.+..+ ++ .+....|.+|++|+.+++.++.... ..+..+.+|+.+.+..+.
T Consensus 333 C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 333 CEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred CCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 889999888654 44 6777778888899998888875431 356777888888876654
No 140
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.31 E-value=1.5e-10 Score=119.50 Aligned_cols=79 Identities=6% Similarity=0.098 Sum_probs=38.3
Q ss_pred ccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEe
Q 047203 573 LYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLN 652 (698)
Q Consensus 573 ~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 652 (698)
+.+|+++++..+ ++.....+|.+|++|+++.|..+ ++.....+|.++++|+.+++.++.... ..+..+++|+.+.
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~ 384 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLP 384 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----
T ss_pred CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEE
Confidence 334455555433 44445556666666666666433 443445566666666666666654331 3445556666665
Q ss_pred cccc
Q 047203 653 LSYN 656 (698)
Q Consensus 653 l~~n 656 (698)
+..+
T Consensus 385 i~~~ 388 (394)
T 4gt6_A 385 VAPG 388 (394)
T ss_dssp ----
T ss_pred eCCC
Confidence 5544
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.30 E-value=2.9e-14 Score=131.89 Aligned_cols=133 Identities=23% Similarity=0.219 Sum_probs=82.7
Q ss_pred CCCcEEECCCCCCCCCCCc------cccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCCCCCCcccchhccCCC
Q 047203 28 TSLQVLDLSNNGFNSKIPH------WLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGNSFLGGRLSRNLGKLC 101 (698)
Q Consensus 28 ~~L~~L~L~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 101 (698)
..++.++++.+.+.+..|. .|..+++|++|++++|.+.+ +| .+.++++|++|++++|.+. .++..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK--KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--SCSSHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--cccchhhcCC
Confidence 3444444444444444443 77778888888888877775 45 6777778888888877742 4555666667
Q ss_pred CCCEEeCcCccCCCccchhhccccccccCCCCcEEEccCCcccccCC-ccccCCCCCcEEEccCceeeecCC
Q 047203 102 NLRTLKLSRNSISGEVSDFINGLSECTNSSLLEKLELGFNQLTGDLP-NSLGYLKNLRYLELWDNSFVGSIP 172 (698)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~ 172 (698)
+|++|++++|++++.. .+..+. +|++|++++|.++...+ ..+..+++|++|++++|.+.+..|
T Consensus 94 ~L~~L~L~~N~l~~l~--~~~~l~------~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 94 TLEELWISYNQIASLS--GIEKLV------NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HCSEEEEEEEECCCHH--HHHHHH------HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCCEEECcCCcCCcCC--ccccCC------CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 7777777777776532 233332 56777777766654322 356666666777666666654433
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=1.9e-11 Score=109.44 Aligned_cols=107 Identities=25% Similarity=0.232 Sum_probs=90.3
Q ss_pred ceEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECC
Q 047203 5 LVELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLT 84 (698)
Q Consensus 5 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 84 (698)
.+.+++++++++.+|... .++|++|+|++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 467899999998888643 2789999999999998888889999999999999999998778888999999999999
Q ss_pred CCCCCCcccchhccCCCCCCEEeCcCccCCCc
Q 047203 85 GNSFLGGRLSRNLGKLCNLRTLKLSRNSISGE 116 (698)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 116 (698)
+|.+ ....+..|..+++|++|++++|.+...
T Consensus 87 ~N~l-~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQL-KSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCC-CCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCcc-CEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9984 344455688899999999999988744
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=1.8e-11 Score=109.58 Aligned_cols=91 Identities=23% Similarity=0.259 Sum_probs=73.2
Q ss_pred ccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEecc
Q 047203 575 LVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLS 654 (698)
Q Consensus 575 ~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 654 (698)
.++.|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|++|++++|.+....++.|..+++|+.|+|+
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 33677888888887777788888888888888888886666777888888888888888887667778888888888888
Q ss_pred cceeeecCCCC
Q 047203 655 YNNLSGEIPKV 665 (698)
Q Consensus 655 ~n~~~~~~p~~ 665 (698)
+|++....+..
T Consensus 111 ~N~~~c~c~~l 121 (170)
T 3g39_A 111 NNPWDCACSDI 121 (170)
T ss_dssp SSCBCTTBGGG
T ss_pred CCCCCCCchhH
Confidence 88888766533
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.29 E-value=5e-14 Score=130.30 Aligned_cols=128 Identities=21% Similarity=0.264 Sum_probs=70.9
Q ss_pred CCCCcEEEccCCcccccCChhhccCCCCCEEECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeecc
Q 047203 493 MPSLSILRLRSNYFNGTIPPELCKLSALHILDLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYST 572 (698)
Q Consensus 493 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (698)
+++|+.|++++|.+.+ +| .+..+++|++|++++|.+. .+|..+..
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-------------------------------- 91 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV-------------------------------- 91 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH--------------------------------
T ss_pred CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc--------------------------------
Confidence 5666666666665553 33 5555666666666666554 22322222
Q ss_pred ccccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCC-ccccCCCCCCeEeccCCcccccCCcC----------
Q 047203 573 LYLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIP-TQIGKLEWLESLDLSKNKLSGSIPPS---------- 641 (698)
Q Consensus 573 ~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~sL~~L~l~~~~~~~~~~~~---------- 641 (698)
+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+....|..
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 2333566666666653 22 45666666666666666663222 35566666666666666665444432
Q ss_pred ccCCCCCCeEecccceee
Q 047203 642 MVSLTFMNHLNLSYNNLS 659 (698)
Q Consensus 642 l~~l~~L~~L~l~~n~~~ 659 (698)
+..+++|+.|+ +|++.
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 55666777665 44443
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=3.7e-11 Score=107.91 Aligned_cols=106 Identities=27% Similarity=0.279 Sum_probs=84.0
Q ss_pred eEEeCCCCCCCCCCCCCCCCCCCCCcEEECCCCCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCC
Q 047203 6 VELHLPNCNLPIPPFHFPSLNFTSLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTG 85 (698)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 85 (698)
+.++++++++..+|...+ ++|++|+|++|.+++..|..|..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 15 ~~l~~~~n~l~~iP~~~~----~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP----TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCCC----TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCcC----CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 568888888888776432 7888899999988877788888888999999998888876666778888888888888
Q ss_pred CCCCCcccchhccCCCCCCEEeCcCccCCCc
Q 047203 86 NSFLGGRLSRNLGKLCNLRTLKLSRNSISGE 116 (698)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 116 (698)
|.+ ....+..|..+++|++|++++|.+...
T Consensus 91 N~l-~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHL-KSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCC-CCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred Ccc-ceeCHHHhccccCCCEEEeCCCCcccc
Confidence 884 333344588888888888888887743
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=8.2e-14 Score=141.64 Aligned_cols=163 Identities=20% Similarity=0.092 Sum_probs=85.6
Q ss_pred CCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhh-----ccCCCCCEEECCCCcCccCCCcccccccC
Q 047203 469 SMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPEL-----CKLSALHILDLSHNNLSGFIPSCVGNFSR 543 (698)
Q Consensus 469 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 543 (698)
++|++|++++|.+.+.....+...+++|+.|++++|.+.+.....+ ...++|++|++++|.+++.....+..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~--- 177 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME--- 177 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH---
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH---
Confidence 4566666666665543333334345566666666666654322222 23466777777776655321111100
Q ss_pred CCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccC----ChhhhccCCCCEEeCCCCcccccC----C
Q 047203 544 MKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEM----PVELTRLIHLGTLNLSQNHLVGKI----P 615 (698)
Q Consensus 544 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~----~ 615 (698)
.+...++|++|++++|.+++.. +..+..+++|++|+|++|.+++.. .
T Consensus 178 -------------------------~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~ 232 (372)
T 3un9_A 178 -------------------------GLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA 232 (372)
T ss_dssp -------------------------HHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred -------------------------HHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence 0112334466666666665432 445566677777777777776532 3
Q ss_pred ccccCCCCCCeEeccCCcccccCCcCccCC---C--CCCeEe--cccceee
Q 047203 616 TQIGKLEWLESLDLSKNKLSGSIPPSMVSL---T--FMNHLN--LSYNNLS 659 (698)
Q Consensus 616 ~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l---~--~L~~L~--l~~n~~~ 659 (698)
.++..+++|++|++++|.+.......++.+ . .|+.+. +..|.+.
T Consensus 233 ~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 233 RAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 444556777888888877775544444332 1 155555 5555554
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=3.6e-11 Score=108.00 Aligned_cols=88 Identities=24% Similarity=0.260 Sum_probs=65.6
Q ss_pred cCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCCCCeEeccc
Q 047203 576 VNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTFMNHLNLSY 655 (698)
Q Consensus 576 L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 655 (698)
|+.|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|.+....++.|..+++|+.|++++
T Consensus 35 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 35 KQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCC
Confidence 36677777777766677777788888888888888755555567788888888888888765555677888888888888
Q ss_pred ceeeecCC
Q 047203 656 NNLSGEIP 663 (698)
Q Consensus 656 n~~~~~~p 663 (698)
|++....+
T Consensus 115 N~~~c~~~ 122 (174)
T 2r9u_A 115 NPWDCECR 122 (174)
T ss_dssp SCBCTTBG
T ss_pred CCcccccc
Confidence 88775544
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.19 E-value=1.1e-12 Score=133.17 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=119.6
Q ss_pred CCCCEEEcCCCcCcccCchhhh----hcCCCCcEEEccCCcccccCChh-hccCCCCCEEECCCCcCccCCCcccccccC
Q 047203 469 SMMDSLDLGDNQLSGNIPAWIG----ESMPSLSILRLRSNYFNGTIPPE-LCKLSALHILDLSHNNLSGFIPSCVGNFSR 543 (698)
Q Consensus 469 ~~L~~L~L~~n~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 543 (698)
+.|++|++++|.+.+.....+. ...++|+.|++++|.+.+..... ...+++|++|++++|.+.+.....+...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~-- 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL-- 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH--
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH--
Confidence 4577777888777643222222 22479999999999987543332 3446789999999998875433332210
Q ss_pred CCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCcc----CChhhhccCCCCEEeCCCCcccccC----C
Q 047203 544 MKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGE----MPVELTRLIHLGTLNLSQNHLVGKI----P 615 (698)
Q Consensus 544 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~----~ 615 (698)
.....+.|++|++++|.+++. ++..+..+++|++|+|++|.+++.. +
T Consensus 150 -------------------------L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 150 -------------------------LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp -------------------------HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred -------------------------HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 001235679999999999764 4445578899999999999998643 5
Q ss_pred ccccCCCCCCeEeccCCccccc----CCcCccCCCCCCeEecccceeeec
Q 047203 616 TQIGKLEWLESLDLSKNKLSGS----IPPSMVSLTFMNHLNLSYNNLSGE 661 (698)
Q Consensus 616 ~~l~~l~sL~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~ 661 (698)
+++...++|++|++++|.+... +++.+...++|++|+|++|++.+.
T Consensus 205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 6778889999999999999854 444556679999999999998753
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.07 E-value=2.4e-08 Score=102.49 Aligned_cols=165 Identities=8% Similarity=0.014 Sum_probs=92.1
Q ss_pred cCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhhhcCCCCcEEEccCCcccccCChhhccCCCCCEE
Q 047203 444 LLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIGESMPSLSILRLRSNYFNGTIPPELCKLSALHIL 523 (698)
Q Consensus 444 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 523 (698)
...+..+.+...... .....+..+.+|+.+.+..+- . .+....+.++..|+.+.+..+ ++......+..+.+|+.+
T Consensus 193 ~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 193 AKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTL 268 (379)
T ss_dssp TCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred cccccccccccceeE-Eeecccccccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEeCccccceeehhccc
Confidence 344444444433322 444555666666666665442 2 344444445666777666554 333444556666667766
Q ss_pred ECCCCcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccccCeEEcCCCcCCccCChhhhccCCCCEE
Q 047203 524 DLSHNNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYLVNLMDLSSNNLSGEMPVELTRLIHLGTL 603 (698)
Q Consensus 524 ~l~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L 603 (698)
.+... +.......+.+ +.+|+.+.+..+.+......+|.+|++|+.+
T Consensus 269 ~l~~~-i~~i~~~aF~~--------------------------------c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 269 NFYAK-VKTVPYLLCSG--------------------------------CSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp EECCC-CSEECTTTTTT--------------------------------CTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred ccccc-ceecccccccc--------------------------------ccccccccccccccceehhhhhcCCCCCCEE
Confidence 66432 22222223333 3333666666666665666677777777777
Q ss_pred eCCCCcccccCCccccCCCCCCeEeccCCcccccCCcCccCCCC
Q 047203 604 NLSQNHLVGKIPTQIGKLEWLESLDLSKNKLSGSIPPSMVSLTF 647 (698)
Q Consensus 604 ~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~~~~~~~l~~l~~ 647 (698)
+|..+ ++.....+|.++++|+++.+..+ +.......|.+++.
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 77644 55455667777777777777544 44445566665543
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.06 E-value=3.7e-08 Score=101.04 Aligned_cols=77 Identities=6% Similarity=0.018 Sum_probs=41.3
Q ss_pred CCcEEEccCCcccccCCccccCCCCCcEEEccCceeeecCCCCCcCcccCCeeeccCcccCccccccCCCCCCcEEEccC
Q 047203 132 LLEKLELGFNQLTGDLPNSLGYLKNLRYLELWDNSFVGSIPPSIGNLTFLKELYLSSNQMNGFPESFGQLSAIEVLDLDE 211 (698)
Q Consensus 132 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~l~~l~~L~~L~l~~ 211 (698)
+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+.. .++.+........+|+.+.+..
T Consensus 47 ~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 47 RISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp GCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCT
T ss_pred CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCC
Confidence 466666654 244456667777777777777543 443444556555 566555542 2333332222223566666655
Q ss_pred C
Q 047203 212 N 212 (698)
Q Consensus 212 ~ 212 (698)
+
T Consensus 123 ~ 123 (379)
T 4h09_A 123 A 123 (379)
T ss_dssp T
T ss_pred c
Confidence 4
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=5e-09 Score=106.19 Aligned_cols=104 Identities=21% Similarity=0.170 Sum_probs=68.4
Q ss_pred EEeCCCC-CCCCCCCCCCCCCCCCCcEEECCC-CCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECC
Q 047203 7 ELHLPNC-NLPIPPFHFPSLNFTSLQVLDLSN-NGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLT 84 (698)
Q Consensus 7 ~L~l~~~-~~~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 84 (698)
.++++++ ++..+|. +..+++|++|+|++ |.+++..+.+|..+++|++|+|++|.+.+..|.+|.++++|++|+|+
T Consensus 12 ~v~~~~~n~l~~ip~---l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH---LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTT---SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCC---CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3566666 6666664 55667777777775 77776666677777777777777777777777777777777777777
Q ss_pred CCCCCCcccchhccCCCCCCEEeCcCccCCC
Q 047203 85 GNSFLGGRLSRNLGKLCNLRTLKLSRNSISG 115 (698)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 115 (698)
+|.+ ....+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l-~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNAL-ESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCC-SCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCcc-ceeCHHHcccCC-ceEEEeeCCCccC
Confidence 7774 222233344343 7777777776653
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.88 E-value=5.4e-09 Score=105.91 Aligned_cols=103 Identities=21% Similarity=0.178 Sum_probs=65.8
Q ss_pred EEEccCC-cccccCChhhccCCCCCEEECCC-CcCccCCCcccccccCCCcCCCCCcccccceEEeecccceeeeccccc
Q 047203 498 ILRLRSN-YFNGTIPPELCKLSALHILDLSH-NNLSGFIPSCVGNFSRMKIEPPDSVEYEGSLQVVLKGTQYVFYSTLYL 575 (698)
Q Consensus 498 ~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (698)
.++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..+.++++|
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L------------------------------- 58 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGEL------------------------------- 58 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCC-------------------------------
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCC-------------------------------
Confidence 4566666 555 4555 77777777777775 76665555555555555
Q ss_pred cCeEEcCCCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 047203 576 VNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 635 (698)
Q Consensus 576 L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~ 635 (698)
+.|+|++|.+++..+..|.++++|+.|+|++|+++...+..+..++ |++|++.+|.+.
T Consensus 59 -~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 59 -RNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -SEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred -CEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6677777777766666667777777777777777644444444444 777777776665
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.84 E-value=2e-09 Score=108.20 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=32.3
Q ss_pred ccccCCCcEEEccCCeeeeeCCCCCCCCCCCCEEEcCCCcCcccCchhhh-hcCCCCcEEEcc
Q 047203 441 IGCLLSVRFLILCNNHISGEVPPSLKNCSMMDSLDLGDNQLSGNIPAWIG-ESMPSLSILRLR 502 (698)
Q Consensus 441 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~-~~l~~L~~L~l~ 502 (698)
+..+|+|+.|.+++|.-. ..+. +. +++|+.|++..|.+.+.....+. ..+|+|+.|+++
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 445677777777666311 1222 32 56777777777766533322232 136677777664
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=5e-09 Score=105.31 Aligned_cols=64 Identities=13% Similarity=0.243 Sum_probs=38.5
Q ss_pred CCCCCcEEEccCceeeecCCCCC---cCcccCCeeeccCcccCc-----cccccCCCCCCcEEEccCCeeee
Q 047203 153 YLKNLRYLELWDNSFVGSIPPSI---GNLTFLKELYLSSNQMNG-----FPESFGQLSAIEVLDLDENQWEG 216 (698)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~ 216 (698)
.+++|++|++.+|.+.+..+..+ ..+++|++|+++.|.+.. ++..+..+++|+.|++++|.++.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 35677777777666543221111 245677777777776655 33444566777777777776543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=2e-08 Score=90.85 Aligned_cols=67 Identities=16% Similarity=0.195 Sum_probs=37.7
Q ss_pred hhhccCCCCEEeCCCCccccc----CCccccCCCCCCeEec--cCCccccc----CCcCccCCCCCCeEecccceee
Q 047203 593 ELTRLIHLGTLNLSQNHLVGK----IPTQIGKLEWLESLDL--SKNKLSGS----IPPSMVSLTFMNHLNLSYNNLS 659 (698)
Q Consensus 593 ~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~sL~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 659 (698)
.+...++|++|+|++|.+++. +.+++...++|++|++ ++|.+... +.+.+...++|++|+|++|.+.
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 344445666666666666543 2345555566666666 55666533 2334444566666666666554
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.41 E-value=3e-08 Score=86.85 Aligned_cols=86 Identities=10% Similarity=0.077 Sum_probs=73.1
Q ss_pred cccCeEEcCCCcCCccCChhhhccCCCCEEeCCCCc-ccccCCccccCC----CCCCeEeccCCc-ccccCCcCccCCCC
Q 047203 574 YLVNLMDLSSNNLSGEMPVELTRLIHLGTLNLSQNH-LVGKIPTQIGKL----EWLESLDLSKNK-LSGSIPPSMVSLTF 647 (698)
Q Consensus 574 ~~L~~l~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l----~sL~~L~l~~~~-~~~~~~~~l~~l~~ 647 (698)
..|++||+++|.+++..-..+.+|++|++|+|++|. +++.....+..+ ++|++|+|++|. ++...-..++.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357999999999998877888999999999999996 887666666664 589999999995 77666677889999
Q ss_pred CCeEecccceee
Q 047203 648 MNHLNLSYNNLS 659 (698)
Q Consensus 648 L~~L~l~~n~~~ 659 (698)
|++|+|++|+..
T Consensus 141 L~~L~L~~c~~I 152 (176)
T 3e4g_A 141 LKYLFLSDLPGV 152 (176)
T ss_dssp CCEEEEESCTTC
T ss_pred CCEEECCCCCCC
Confidence 999999999743
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=1e-07 Score=86.26 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=39.9
Q ss_pred ccCeEEcCCCcCCcc----CChhhhccCCCCEEeC--CCCcccccC----CccccCCCCCCeEeccCCccc
Q 047203 575 LVNLMDLSSNNLSGE----MPVELTRLIHLGTLNL--SQNHLVGKI----PTQIGKLEWLESLDLSKNKLS 635 (698)
Q Consensus 575 ~L~~l~l~~n~~~~~----~~~~l~~l~~L~~L~l--~~n~~~~~~----~~~l~~l~sL~~L~l~~~~~~ 635 (698)
.|++|++++|.|++. +...+...++|++|+| ++|.++... .+.+...++|++|++++|.+.
T Consensus 94 ~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 94 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 345666666666543 3445666677888888 777777543 345555678888888888775
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=1.3e-06 Score=76.47 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=13.5
Q ss_pred CcEEEccCCc-ccccCCccccCCCCCcEEEccCc
Q 047203 133 LEKLELGFNQ-LTGDLPNSLGYLKNLRYLELWDN 165 (698)
Q Consensus 133 L~~L~l~~~~-i~~~~~~~~~~l~~L~~L~l~~~ 165 (698)
|+.|++++|. +++.....+..+++|++|++++|
T Consensus 116 L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp CCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 3444444332 33333333444444444444444
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=4.5e-06 Score=79.11 Aligned_cols=64 Identities=30% Similarity=0.359 Sum_probs=31.7
Q ss_pred ccccCeEEcCCCcCCc--cCChhhhccCCCCEEeCCCCcccccCCccccCCC--CCCeEeccCCcccccC
Q 047203 573 LYLVNLMDLSSNNLSG--EMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLE--WLESLDLSKNKLSGSI 638 (698)
Q Consensus 573 ~~~L~~l~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~--sL~~L~l~~~~~~~~~ 638 (698)
+++|++|++++|.+++ .++..+..+++|+.|+|++|.+.+. +.+..+. +|++|++++|.+.+..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 3444556666665554 2234445555555555555555533 2222222 5555555555555433
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=8e-07 Score=84.29 Aligned_cols=85 Identities=26% Similarity=0.280 Sum_probs=63.3
Q ss_pred EEcCCCcCC---ccCChhhhccCCCCEEeCCCCcccc--cCCccccCCCCCCeEeccCCccccc-CCcCccCCCCCCeEe
Q 047203 579 MDLSSNNLS---GEMPVELTRLIHLGTLNLSQNHLVG--KIPTQIGKLEWLESLDLSKNKLSGS-IPPSMVSLTFMNHLN 652 (698)
Q Consensus 579 l~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~sL~~L~l~~~~~~~~-~~~~l~~l~~L~~L~ 652 (698)
++++.|... +.+......+++|+.|+|++|++++ .++..+..+++|+.|+|++|.+... ..+.+..+ +|++|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 566666432 1222223568999999999999986 4456677899999999999999854 12333444 999999
Q ss_pred cccceeeecCCC
Q 047203 653 LSYNNLSGEIPK 664 (698)
Q Consensus 653 l~~n~~~~~~p~ 664 (698)
+++|++.+.+|.
T Consensus 227 L~~Npl~~~~~~ 238 (267)
T 3rw6_A 227 LDGNSLCDTFRD 238 (267)
T ss_dssp CTTSTTGGGCSS
T ss_pred ccCCcCccccCc
Confidence 999999988874
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.36 E-value=4.9e-05 Score=67.88 Aligned_cols=83 Identities=11% Similarity=0.171 Sum_probs=51.4
Q ss_pred cCeEEcCCCcCCcc----CChhhhccCCCCEEeCCCCcccccC----CccccCCCCCCeEeccCCc---ccc----cCCc
Q 047203 576 VNLMDLSSNNLSGE----MPVELTRLIHLGTLNLSQNHLVGKI----PTQIGKLEWLESLDLSKNK---LSG----SIPP 640 (698)
Q Consensus 576 L~~l~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~sL~~L~l~~~~---~~~----~~~~ 640 (698)
|+.|+|++|.+++. +.+.+...++|++|+|++|.|+... .+++...+.|++|+|++|. +.. .+.+
T Consensus 72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~ 151 (197)
T 1pgv_A 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM 151 (197)
T ss_dssp CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH
T ss_pred cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH
Confidence 35555555555443 3344556677888888888777543 3556666778888887653 232 2345
Q ss_pred CccCCCCCCeEeccccee
Q 047203 641 SMVSLTFMNHLNLSYNNL 658 (698)
Q Consensus 641 ~l~~l~~L~~L~l~~n~~ 658 (698)
.+..-++|++|+++.|..
T Consensus 152 aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 152 AIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHCSSCCEEECCCCCH
T ss_pred HHHhCCCcCeEeccCCCc
Confidence 556667888888877654
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.10 E-value=0.00019 Score=64.07 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=69.4
Q ss_pred ccccccCeEEcCCC-cCCcc----CChhhhccCCCCEEeCCCCcccccC----CccccCCCCCCeEeccCCccccc----
Q 047203 571 STLYLVNLMDLSSN-NLSGE----MPVELTRLIHLGTLNLSQNHLVGKI----PTQIGKLEWLESLDLSKNKLSGS---- 637 (698)
Q Consensus 571 ~~~~~L~~l~l~~n-~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~sL~~L~l~~~~~~~~---- 637 (698)
..-+.|++|+++++ .|.+. +.+++...++|+.|+|++|.+.+.. .+++...++|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44568899999986 88753 4556777899999999999998654 35566779999999999999854
Q ss_pred CCcCccCCCCCCeEecccc
Q 047203 638 IPPSMVSLTFMNHLNLSYN 656 (698)
Q Consensus 638 ~~~~l~~l~~L~~L~l~~n 656 (698)
+.+.+..-+.|++|+|++|
T Consensus 118 la~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHTTTTCCCSEEECCCC
T ss_pred HHHHHhhCCceeEEECCCC
Confidence 4566777788999999876
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.47 E-value=0.0045 Score=51.46 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=35.0
Q ss_pred CeEEcCCCcCC-ccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCCccc
Q 047203 577 NLMDLSSNNLS-GEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKNKLS 635 (698)
Q Consensus 577 ~~l~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~~~~ 635 (698)
..++.+++.++ ..+|..+. ++|+.|+|++|.++..-++.|..+++|+.|+|++|...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46677777665 23443222 35777777777777555556666677777777776654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.35 E-value=0.0077 Score=50.04 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=17.1
Q ss_pred CCcEEECCCCCCCCCCCccccCCCCCCEEEcccCc
Q 047203 29 SLQVLDLSNNGFNSKIPHWLFNITRLSSLDLNTND 63 (698)
Q Consensus 29 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 63 (698)
+|++|+|++|.|+..-++.|..+++|++|+|++|.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 35555555555554444444445555555544443
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.05 E-value=4.8 Score=31.02 Aligned_cols=49 Identities=12% Similarity=0.022 Sum_probs=35.3
Q ss_pred CCcCCccCChhhhccCCCCEEeCCCCcccccCCccccCCCCCCeEeccCC
Q 047203 583 SNNLSGEMPVELTRLIHLGTLNLSQNHLVGKIPTQIGKLEWLESLDLSKN 632 (698)
Q Consensus 583 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~sL~~L~l~~~ 632 (698)
+..++.+...+|.+|++|+++.|-.+ ++.+...+|.+|++|+.+.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34455566677888888888888765 44466678888888888888764
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=73.57 E-value=7.7 Score=29.84 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=33.3
Q ss_pred CCCCCCCCccccCCCCCCEEEcccCcccccCCccccCCCCCcEEECCCC
Q 047203 38 NGFNSKIPHWLFNITRLSSLDLNTNDLQGDIPDGFSSLNSLQQLDLTGN 86 (698)
Q Consensus 38 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 86 (698)
..++.+-..+|.+|..|+.+.+..+ +..+-..+|.+|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455566677778888888887753 55566677788888887777654
Done!