BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047206
(373 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KKU|A Chain A, Crystal Structure Of Nuclear Human Nicotinamide
Mononucleotide Adenylyltransferase
Length = 279
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 76 SGRYTNGKNVIDLLGEQLQLPGLIPPF-----ADPSTKASKIVHGVNFAS 120
+GRYT K +I +G+ + GLIP + A+ +TK SK V + S
Sbjct: 38 TGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATKNSKWVEVDTWES 87
>pdb|1KQN|A Chain A, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|B Chain B, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|C Chain C, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|D Chain D, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|E Chain E, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQN|F Chain F, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Nad
pdb|1KQO|A Chain A, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|B Chain B, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|C Chain C, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|D Chain D, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|E Chain E, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KQO|F Chain F, Crystal Structure Of NmnNAMN ADENYLYLTRANSFERASE COMPLEXED
With Deamido-Nad
pdb|1KR2|A Chain A, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|B Chain B, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|C Chain C, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|D Chain D, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|E Chain E, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
pdb|1KR2|F Chain F, Crystal Structure Of Human NmnNAMN ADENYLYL TRANSFERASE
Complexed With Tiazofurin Adenine Dinucleotide (Tad)
Length = 279
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 76 SGRYTNGKNVIDLLGEQLQLPGLIPPF-----ADPSTKASKIVHGVNFAS 120
+GRYT K +I +G+ + GLIP + A+ +TK SK V + S
Sbjct: 38 TGRYTVVKGIISPVGDAYKKKGLIPAYHRVIMAELATKNSKWVEVDTWES 87
>pdb|1GZU|A Chain A, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|B Chain B, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
pdb|1GZU|C Chain C, Crystal Structure Of Human Nicotinamide Mononucleotide
Adenylyltransferase In Complex With Nmn
Length = 290
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 76 SGRYTNGKNVIDLLGEQLQLPGLIPPF-----ADPSTKASKIVHGVNFAS 120
+GRYT K +I +G+ + GLIP + A+ +TK SK V + S
Sbjct: 49 TGRYTVVKGIISPVGDAYKKKGLIPAYHRVIXAELATKNSKWVEVDTWES 98
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 47 LVDNGNNNFLQNKAKVNYLPYGIDFPYGPSGRYTNGKNVIDLL 89
++G+N + + +AK + LP G P P+G +T +++D+
Sbjct: 487 FAEHGSNIWFEREAK-DLLPEGFTHPGSPNGTFTKETDIMDVW 528
>pdb|3RLG|A Chain A, Crystal Structure Of Loxosceles Intermedia Phospholipase D
Isoform 1 H12a Mutant
Length = 302
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 203 LTNSLSQHLKKLYSLGGRKFVLMSLYPIGCIPMVKSFKPK 242
L +L QH + GGR ++++S+ + P++K FK +
Sbjct: 132 LAKNLLQHYWNNGNNGGRAYIVLSIPDLNHYPLIKGFKDQ 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,002,373
Number of Sequences: 62578
Number of extensions: 495339
Number of successful extensions: 1033
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1030
Number of HSP's gapped (non-prelim): 7
length of query: 373
length of database: 14,973,337
effective HSP length: 100
effective length of query: 273
effective length of database: 8,715,537
effective search space: 2379341601
effective search space used: 2379341601
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)