BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047211
         (282 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2YFK|A Chain A, Crystal Structure Of A Putative Transcarbamoylase From
           Enterococcus Faecalis
 pdb|2YFK|B Chain B, Crystal Structure Of A Putative Transcarbamoylase From
           Enterococcus Faecalis
          Length = 418

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 227 GAPTEIPRGPIDMKALFGQDVVLVHSSGVPI 257
           G P  +P+G + +    G DVVL H  G  I
Sbjct: 202 GKPLSVPQGIVGLMTRLGMDVVLAHPEGYEI 232


>pdb|3Q98|A Chain A, Structure Of Ygew Encoded Protein From E. Coli
          Length = 399

 Score = 30.0 bits (66), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 227 GAPTEIPRGPIDMKALFGQDVVLVHSSGVPI 257
           G P  +P+G I +   FG DV L H  G  +
Sbjct: 205 GKPLSVPQGIIGLXTRFGXDVTLAHPEGYDL 235


>pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis
 pdb|2FFL|B Chain B, Crystal Structure Of Dicer From Giardia Intestinalis
 pdb|2FFL|C Chain C, Crystal Structure Of Dicer From Giardia Intestinalis
 pdb|2FFL|D Chain D, Crystal Structure Of Dicer From Giardia Intestinalis
 pdb|2QVW|A Chain A, Structure Of Giardia Dicer Refined Against Twinned Data
 pdb|2QVW|B Chain B, Structure Of Giardia Dicer Refined Against Twinned Data
 pdb|2QVW|C Chain C, Structure Of Giardia Dicer Refined Against Twinned Data
 pdb|2QVW|D Chain D, Structure Of Giardia Dicer Refined Against Twinned Data
          Length = 756

 Score = 28.5 bits (62), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 17/92 (18%)

Query: 196 VDQNSSVTSMLCPSESSNLQ-YQTGFITVFINGAPTEIPRGPIDMKALFGQDVVLVHSS- 253
           V+Q +      CP     L  Y        + G+ TE P GP+  K L   + +L + S 
Sbjct: 548 VEQQTDKNESACPPTIPVLYIYHRSVQCPVLYGSLTETPTGPVASKVLALYEKILAYESS 607

Query: 254 ---------------GVPIPTNEFGFLMQSLQ 270
                           VPIP+    FL++ LQ
Sbjct: 608 GGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQ 639


>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin
           And Arm Domains Of Calreticulin
          Length = 332

 Score = 28.5 bits (62), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 163 FVAGSSSFCGVMGGDDGVET-----LYSVSGQMGFQEVVDQNSSVTSMLCPSESSNLQYQ 217
           FV  S  F G +  D G++T      Y++S +  F+   ++  ++          N+   
Sbjct: 35  FVLSSGKFYGDLEKDKGLQTSQDARFYALSAK--FEPFSNKGQTLVVQFTVKHEQNIDCG 92

Query: 218 TGFITVFINGAPTEIPRGPIDMKALFGQDV 247
            G++ +F +G   +   G  +   +FG D+
Sbjct: 93  GGYVKLFPSGLDQKDMHGDSEYNIMFGPDI 122


>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain
          Length = 273

 Score = 28.5 bits (62), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/90 (21%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 163 FVAGSSSFCGVMGGDDGVET-----LYSVSGQMGFQEVVDQNSSVTSMLCPSESSNLQYQ 217
           FV  S  F G +  D G++T      Y++S +  F+   ++  ++          N+   
Sbjct: 35  FVLSSGKFYGDLEKDKGLQTSQDARFYALSAK--FEPFSNKGQTLVVQFTVKHEQNIDCG 92

Query: 218 TGFITVFINGAPTEIPRGPIDMKALFGQDV 247
            G++ +F +G   +   G  +   +FG D+
Sbjct: 93  GGYVKLFPSGLDQKDMHGDSEYNIMFGPDI 122


>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By
           Calreticulin
 pdb|3O0X|A Chain A, Structural Basis Of Carbohydrate Recognition By
           Calreticulin
 pdb|3O0X|B Chain B, Structural Basis Of Carbohydrate Recognition By
           Calreticulin
          Length = 273

 Score = 27.3 bits (59), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 163 FVAGSSSFCGVMGGDDGVET-----LYSVSGQMGFQEVVDQNSSVTSMLCPSESSNLQYQ 217
           FV  S  F G +  D G++T      Y++S +  F+   ++  ++          N+   
Sbjct: 35  FVLSSGKFYGDLEKDKGLQTSQDARFYALSAK--FEPFSNKGQTLVVQFTVKHEQNIDCG 92

Query: 218 TGFITVFINGAPTEIPRGPIDMKALFGQDV 247
            G++ +F +G   +   G  +    FG D+
Sbjct: 93  GGYVKLFPSGLDQKDXHGDSEYNIXFGPDI 122


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,254,368
Number of Sequences: 62578
Number of extensions: 271069
Number of successful extensions: 553
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 7
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)