Query 047211
Match_columns 282
No_of_seqs 143 out of 588
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 15:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cue_A Paired box protein PAX6 99.8 2.8E-21 9.6E-26 146.4 5.1 70 34-108 3-72 (80)
2 1puf_A HOX-1.7, homeobox prote 99.8 8.5E-21 2.9E-25 142.8 5.8 71 30-105 5-75 (77)
3 2dms_A Homeobox protein OTX2; 99.8 2.2E-21 7.5E-26 146.8 2.2 68 32-104 1-68 (80)
4 2dmu_A Homeobox protein goosec 99.8 4.3E-21 1.5E-25 141.6 3.7 65 33-102 2-66 (70)
5 2dmq_A LIM/homeobox protein LH 99.8 5.9E-21 2E-25 143.9 4.4 66 34-104 3-68 (80)
6 2da3_A Alpha-fetoprotein enhan 99.8 3.2E-21 1.1E-25 144.9 2.6 68 30-102 9-76 (80)
7 2da1_A Alpha-fetoprotein enhan 99.8 2.2E-21 7.6E-26 143.0 1.5 66 33-103 2-67 (70)
8 2cra_A Homeobox protein HOX-B1 99.8 4.3E-21 1.5E-25 141.9 2.7 66 32-102 1-66 (70)
9 1nk2_P Homeobox protein VND; h 99.8 1.2E-20 4.1E-25 142.0 4.9 67 34-105 5-71 (77)
10 2e1o_A Homeobox protein PRH; D 99.8 9.6E-21 3.3E-25 140.0 4.0 65 33-102 2-66 (70)
11 2da2_A Alpha-fetoprotein enhan 99.8 2.8E-21 9.6E-26 142.4 1.0 65 33-102 2-66 (70)
12 2dmt_A Homeobox protein BARH-l 99.8 1.3E-20 4.4E-25 142.7 4.3 66 32-102 11-76 (80)
13 2djn_A Homeobox protein DLX-5; 99.8 6E-21 2E-25 141.1 2.3 66 32-102 1-66 (70)
14 2kt0_A Nanog, homeobox protein 99.8 5.5E-21 1.9E-25 145.3 1.6 68 31-103 15-82 (84)
15 2da4_A Hypothetical protein DK 99.8 8.4E-21 2.9E-25 143.6 2.5 64 33-101 3-70 (80)
16 2vi6_A Homeobox protein nanog; 99.8 5.3E-21 1.8E-25 138.2 1.3 60 37-101 2-61 (62)
17 2h1k_A IPF-1, pancreatic and d 99.8 1.1E-20 3.9E-25 137.0 2.9 61 37-102 2-62 (63)
18 1zq3_P PRD-4, homeotic bicoid 99.8 1.7E-20 5.7E-25 138.2 3.7 64 37-105 1-64 (68)
19 2hdd_A Protein (engrailed home 99.8 1.6E-20 5.3E-25 135.3 2.3 58 38-100 3-60 (61)
20 1fjl_A Paired protein; DNA-bin 99.8 3.9E-20 1.3E-24 140.2 4.4 65 35-104 15-79 (81)
21 1ig7_A Homeotic protein MSX-1; 99.8 2.4E-20 8.1E-25 132.7 3.0 57 39-100 1-57 (58)
22 2cuf_A FLJ21616 protein; homeo 99.8 3.5E-20 1.2E-24 144.7 3.9 71 33-104 2-83 (95)
23 1yz8_P Pituitary homeobox 2; D 99.8 1.2E-20 4.3E-25 138.7 1.2 63 37-104 2-64 (68)
24 3a01_A Homeodomain-containing 99.8 2.4E-20 8.2E-25 145.7 2.7 69 35-108 14-82 (93)
25 1ahd_P Antennapedia protein mu 99.8 2.6E-20 8.8E-25 137.4 2.1 61 38-103 2-62 (68)
26 1wh5_A ZF-HD homeobox family p 99.8 3.4E-20 1.2E-24 141.8 2.8 61 35-100 14-78 (80)
27 1jgg_A Segmentation protein EV 99.8 4E-20 1.4E-24 132.8 2.5 58 39-101 2-59 (60)
28 2l7z_A Homeobox protein HOX-A1 99.8 6.9E-20 2.4E-24 136.8 3.8 63 36-103 5-67 (73)
29 2m0c_A Homeobox protein arista 99.8 3.3E-20 1.1E-24 137.6 1.8 65 34-103 5-69 (75)
30 1wh7_A ZF-HD homeobox family p 99.8 6.2E-20 2.1E-24 140.9 3.4 62 33-100 12-78 (80)
31 1bw5_A ISL-1HD, insulin gene e 99.8 2.8E-20 9.6E-25 135.9 1.4 61 37-102 2-62 (66)
32 2k40_A Homeobox expressed in E 99.8 1.5E-20 5.2E-25 137.7 -0.1 62 38-104 1-62 (67)
33 1b8i_A Ultrabithorax, protein 99.8 3.4E-20 1.1E-24 141.2 1.6 63 36-103 18-80 (81)
34 2r5y_A Homeotic protein sex co 99.8 2.7E-20 9.2E-25 143.3 0.9 64 34-102 24-87 (88)
35 3a02_A Homeobox protein arista 99.8 5.2E-20 1.8E-24 132.2 2.0 58 41-103 2-59 (60)
36 1ftt_A TTF-1 HD, thyroid trans 99.8 5.5E-20 1.9E-24 135.4 2.2 62 38-104 2-63 (68)
37 2da5_A Zinc fingers and homeob 99.8 1.1E-19 3.7E-24 136.6 3.4 61 38-103 7-67 (75)
38 1b72_A Protein (homeobox prote 99.8 7.9E-20 2.7E-24 143.2 2.4 64 36-104 32-95 (97)
39 2dn0_A Zinc fingers and homeob 99.8 5E-20 1.7E-24 138.3 1.0 65 34-103 4-68 (76)
40 3rkq_A Homeobox protein NKX-2. 99.8 1.3E-19 4.5E-24 127.9 2.9 57 38-99 2-58 (58)
41 1uhs_A HOP, homeodomain only p 99.8 2E-19 6.8E-24 133.6 3.8 59 39-102 2-61 (72)
42 2hi3_A Homeodomain-only protei 99.8 1.5E-19 5.3E-24 134.7 3.1 59 39-102 3-62 (73)
43 2ly9_A Zinc fingers and homeob 99.8 1.9E-19 6.7E-24 133.8 2.7 63 36-103 4-66 (74)
44 1akh_A Protein (mating-type pr 99.8 1.6E-19 5.4E-24 129.6 1.8 59 36-99 3-61 (61)
45 2da6_A Hepatocyte nuclear fact 99.7 5.2E-19 1.8E-23 142.7 4.8 70 36-106 4-90 (102)
46 3a03_A T-cell leukemia homeobo 99.7 3.2E-19 1.1E-23 126.9 2.7 54 43-101 2-55 (56)
47 1b72_B Protein (PBX1); homeodo 99.7 3E-19 1E-23 136.5 2.6 65 38-107 1-68 (87)
48 1x2n_A Homeobox protein pknox1 99.7 6.5E-19 2.2E-23 130.9 4.1 66 32-102 1-69 (73)
49 3nar_A ZHX1, zinc fingers and 99.7 3.2E-19 1.1E-23 139.6 1.6 70 31-105 18-87 (96)
50 1puf_B PRE-B-cell leukemia tra 99.7 3.8E-19 1.3E-23 132.1 1.2 63 38-105 1-66 (73)
51 1du6_A PBX1, homeobox protein 99.7 5.8E-19 2E-23 128.0 1.6 59 37-100 2-63 (64)
52 1lfb_A Liver transcription fac 99.7 5.4E-19 1.8E-23 140.9 0.6 69 36-105 7-92 (99)
53 2ecc_A Homeobox and leucine zi 99.7 1.7E-18 5.9E-23 132.9 3.3 60 40-104 5-64 (76)
54 1au7_A Protein PIT-1, GHF-1; c 99.7 4.8E-19 1.7E-23 148.5 0.3 62 35-101 84-145 (146)
55 2dmn_A Homeobox protein TGIF2L 99.7 3.9E-18 1.3E-22 130.7 4.4 66 33-103 2-70 (83)
56 1e3o_C Octamer-binding transcr 99.7 8.3E-19 2.8E-23 148.7 0.6 62 35-101 98-159 (160)
57 3d1n_I POU domain, class 6, tr 99.7 3E-18 1E-22 143.7 3.2 63 33-100 88-150 (151)
58 1k61_A Mating-type protein alp 99.7 2.6E-18 8.9E-23 123.1 2.2 55 41-100 1-58 (60)
59 2xsd_C POU domain, class 3, tr 99.7 1E-18 3.5E-23 149.4 -0.9 65 35-104 96-160 (164)
60 1mnm_C Protein (MAT alpha-2 tr 99.7 4.6E-18 1.6E-22 130.6 2.7 60 36-100 25-87 (87)
61 2ecb_A Zinc fingers and homeob 99.7 2.5E-18 8.6E-23 135.1 0.8 55 44-103 17-71 (89)
62 1wi3_A DNA-binding protein SAT 99.7 6.3E-18 2.2E-22 128.7 2.8 63 32-99 1-64 (71)
63 2cqx_A LAG1 longevity assuranc 99.7 2.3E-18 8E-23 129.3 -0.0 58 39-101 9-67 (72)
64 2dmp_A Zinc fingers and homeob 99.7 6.2E-18 2.1E-22 131.2 1.9 59 41-104 16-74 (89)
65 2e19_A Transcription factor 8; 99.7 6.6E-18 2.3E-22 124.4 1.5 55 41-100 6-60 (64)
66 1le8_B Mating-type protein alp 99.7 1.2E-17 4.1E-22 127.6 2.3 60 39-103 3-65 (83)
67 2d5v_A Hepatocyte nuclear fact 99.7 1.3E-17 4.4E-22 140.9 1.7 64 35-103 94-157 (164)
68 3l1p_A POU domain, class 5, tr 99.6 1.8E-17 6E-22 140.1 1.4 61 36-101 94-154 (155)
69 2l9r_A Homeobox protein NKX-3. 99.6 1.5E-17 5E-22 124.9 -0.1 55 44-103 10-64 (69)
70 3nau_A Zinc fingers and homeob 99.6 4.3E-17 1.5E-21 122.6 2.3 52 46-102 12-63 (66)
71 1x2m_A LAG1 longevity assuranc 99.6 4E-17 1.4E-21 121.6 0.0 49 47-100 9-58 (64)
72 3k2a_A Homeobox protein MEIS2; 99.5 7.2E-16 2.4E-20 114.0 0.8 58 44-106 4-64 (67)
73 1ic8_A Hepatocyte nuclear fact 99.5 9E-16 3.1E-20 135.3 -0.4 65 36-101 113-194 (194)
74 2h8r_A Hepatocyte nuclear fact 99.4 4.7E-14 1.6E-18 127.0 3.0 64 35-99 139-219 (221)
75 2da7_A Zinc finger homeobox pr 99.4 8.2E-14 2.8E-18 106.2 1.7 46 47-97 14-59 (71)
76 1mh3_A Maltose binding-A1 home 99.3 7.8E-14 2.7E-18 127.1 -0.3 56 39-99 366-421 (421)
77 2lk2_A Homeobox protein TGIF1; 99.3 6.3E-13 2.1E-17 104.9 2.3 58 43-105 10-70 (89)
78 2nzz_A Penetratin conjugated G 98.8 2.3E-10 7.8E-15 77.3 -0.6 23 85-107 1-23 (37)
79 1tyg_B YJBS; alpha beta barrel 81.5 1.3 4.4E-05 34.1 3.7 59 219-279 19-82 (87)
80 2ys9_A Homeobox and leucine zi 81.0 0.46 1.6E-05 36.0 1.0 43 45-92 13-55 (70)
81 2rgt_A Fusion of LIM/homeobox 74.0 0.056 1.9E-06 44.8 -6.5 30 36-66 134-163 (169)
82 1jko_C HIN recombinase, DNA-in 72.1 2.2 7.6E-05 27.0 2.3 43 44-96 5-47 (52)
83 3hug_A RNA polymerase sigma fa 71.9 2 6.9E-05 31.6 2.3 49 44-102 37-85 (92)
84 1ryj_A Unknown; beta/alpha pro 68.5 5.1 0.00018 28.8 3.8 55 220-280 4-66 (70)
85 2elh_A CG11849-PA, LD40883P; s 63.8 4.1 0.00014 30.0 2.5 43 39-91 17-59 (87)
86 2glo_A Brinker CG9653-PA; prot 63.0 4.1 0.00014 27.9 2.2 45 42-92 3-47 (59)
87 3lph_A Protein REV; helix-loop 63.0 5.1 0.00017 30.5 2.9 40 50-108 18-57 (72)
88 2x7l_M HIV REV; nuclear export 61.2 3 0.0001 34.2 1.4 40 50-108 15-54 (115)
89 1hlv_A CENP-B, major centromer 60.2 3.9 0.00013 31.4 1.9 51 40-98 3-53 (131)
90 2kmm_A Guanosine-3',5'-BIS(dip 59.4 14 0.00048 25.7 4.6 53 221-279 3-62 (73)
91 1tc3_C Protein (TC3 transposas 57.4 6.3 0.00022 24.2 2.2 40 44-93 5-44 (51)
92 3f6y_A ADP-ribosyl cyclase 1; 57.0 5 0.00017 37.0 2.3 39 218-261 163-215 (262)
93 2eqr_A N-COR1, N-COR, nuclear 56.1 6.7 0.00023 27.7 2.4 52 37-96 7-59 (61)
94 2k5p_A THis protein, thiamine- 54.6 3.6 0.00012 30.7 0.8 57 221-279 1-64 (78)
95 3mzy_A RNA polymerase sigma-H 54.2 6 0.0002 30.3 2.0 48 44-102 109-156 (164)
96 2o8x_A Probable RNA polymerase 54.2 3.5 0.00012 28.0 0.6 47 44-100 15-61 (70)
97 1p4w_A RCSB; solution structur 53.6 5.4 0.00018 30.7 1.7 46 42-98 32-77 (99)
98 3gc6_A ECTO-NAD+ glycohydrolas 53.6 6.8 0.00023 35.8 2.6 39 218-261 162-212 (247)
99 1f0z_A THis protein; ubiquitin 52.8 5.6 0.00019 28.0 1.6 57 221-279 1-61 (66)
100 1je8_A Nitrate/nitrite respons 51.2 3.1 0.0001 30.4 -0.1 51 41-102 18-68 (82)
101 1s7o_A Hypothetical UPF0122 pr 49.7 8.3 0.00028 30.2 2.2 49 44-102 22-70 (113)
102 3c57_A Two component transcrip 49.7 4.8 0.00017 30.1 0.8 44 44-98 27-70 (95)
103 1fse_A GERE; helix-turn-helix 48.0 4.8 0.00017 27.6 0.5 49 41-100 8-56 (74)
104 3fcg_A F1 capsule-anchoring pr 47.6 7.7 0.00026 30.2 1.7 24 219-242 27-53 (90)
105 1isi_A Bone marrow stromal cel 47.3 7.7 0.00026 35.8 1.9 36 218-256 152-201 (265)
106 2cu3_A Unknown function protei 47.3 20 0.0007 24.9 3.8 55 222-279 1-59 (64)
107 1xsv_A Hypothetical UPF0122 pr 46.7 10 0.00035 29.5 2.3 51 44-104 25-75 (113)
108 2rnj_A Response regulator prot 46.6 4.5 0.00015 29.7 0.2 47 43-100 28-74 (91)
109 3p5s_A CD38 molecule; cyclic A 45.8 11 0.00036 35.1 2.6 39 218-261 193-243 (278)
110 2l32_A Small archaeal modifier 45.6 16 0.00056 26.8 3.1 53 220-279 2-61 (74)
111 1iuf_A Centromere ABP1 protein 44.5 13 0.00044 29.9 2.6 52 38-93 5-59 (144)
112 3lag_A Uncharacterized protein 43.3 35 0.0012 25.5 4.8 59 219-277 6-71 (98)
113 1x3u_A Transcriptional regulat 41.0 3.8 0.00013 28.7 -0.9 45 45-100 17-61 (79)
114 3iz6_M 40S ribosomal protein S 40.4 34 0.0011 29.0 4.7 29 64-95 59-87 (152)
115 1ku3_A Sigma factor SIGA; heli 39.3 11 0.00038 26.4 1.3 46 44-99 10-59 (73)
116 1rp3_A RNA polymerase sigma fa 38.9 14 0.00047 30.2 2.0 48 44-101 187-234 (239)
117 2kl0_A Putative thiamin biosyn 38.5 18 0.0006 26.5 2.3 56 221-279 1-60 (73)
118 2lv7_A Calcium-binding protein 38.5 30 0.001 25.8 3.7 50 40-91 25-78 (100)
119 1or7_A Sigma-24, RNA polymeras 37.3 13 0.00044 29.5 1.6 48 45-102 141-188 (194)
120 2p7v_B Sigma-70, RNA polymeras 36.0 12 0.00041 25.8 1.0 46 44-99 5-54 (68)
121 2x48_A CAG38821; archeal virus 35.5 9.2 0.00032 25.1 0.4 40 43-92 12-53 (55)
122 1fi6_A EH domain protein REPS1 33.9 15 0.00052 26.5 1.4 42 43-88 1-46 (92)
123 2jn6_A Protein CGL2762, transp 32.9 19 0.00065 26.4 1.7 41 42-92 3-45 (97)
124 1wj7_A Hypothetical protein (R 32.5 44 0.0015 26.8 3.9 50 33-87 8-57 (104)
125 2q0o_A Probable transcriptiona 32.5 16 0.00054 31.0 1.4 48 41-99 172-219 (236)
126 2jpc_A SSRB; DNA binding prote 32.5 9.5 0.00033 25.4 0.0 42 48-100 2-43 (61)
127 3ulq_B Transcriptional regulat 31.9 13 0.00044 27.8 0.6 43 40-93 25-67 (90)
128 3fip_A Outer membrane usher pr 31.7 22 0.00077 34.7 2.5 39 218-256 128-174 (493)
129 2q1z_A RPOE, ECF SIGE; ECF sig 31.1 8.3 0.00028 30.5 -0.6 26 75-100 156-181 (184)
130 3fia_A Intersectin-1; EH 1 dom 30.3 27 0.00092 28.2 2.4 21 40-60 22-42 (121)
131 1tty_A Sigma-A, RNA polymerase 29.5 14 0.00049 26.9 0.6 47 44-100 18-68 (87)
132 1etf_B REV peptide; complex (R 28.7 22 0.00076 22.1 1.2 15 93-107 8-22 (26)
133 3i5g_B Myosin regulatory light 28.6 32 0.0011 27.0 2.5 30 40-69 5-38 (153)
134 3u5c_S 40S ribosomal protein S 28.2 40 0.0014 28.3 3.1 29 64-95 61-89 (146)
135 3fgx_A Rbstp2171; structural g 27.5 49 0.0017 27.0 3.5 39 45-88 73-112 (114)
136 1r12_A ADP-ribosyl cyclase; X- 27.4 33 0.0011 31.5 2.7 41 218-262 152-206 (258)
137 3fmy_A HTH-type transcriptiona 26.8 22 0.00075 24.8 1.1 42 44-97 10-51 (73)
138 1pdn_C Protein (PRD paired); p 25.7 48 0.0016 24.2 2.9 46 43-93 74-126 (128)
139 3o9x_A Uncharacterized HTH-typ 25.1 21 0.0007 27.6 0.8 23 75-97 89-111 (133)
140 3clo_A Transcriptional regulat 25.1 17 0.00057 31.4 0.3 49 43-102 196-244 (258)
141 1u78_A TC3 transposase, transp 24.9 38 0.0013 25.5 2.3 41 43-93 5-45 (141)
142 1k78_A Paired box protein PAX5 24.6 69 0.0024 24.8 3.8 50 42-95 88-143 (149)
143 1l0o_C Sigma factor; bergerat 24.5 16 0.00054 29.7 0.0 45 44-98 198-242 (243)
144 1l3l_A Transcriptional activat 24.4 23 0.00078 29.9 1.0 47 41-98 170-216 (234)
145 2k27_A Paired box protein PAX- 23.7 42 0.0014 26.5 2.4 47 42-92 81-133 (159)
146 3j20_O 30S ribosomal protein S 22.3 24 0.00081 29.8 0.7 9 87-95 74-82 (148)
147 2k27_A Paired box protein PAX- 21.7 78 0.0027 24.9 3.6 40 44-93 25-64 (159)
148 1c07_A Protein (epidermal grow 20.9 25 0.00086 25.6 0.5 42 43-88 2-47 (95)
No 1
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=2.8e-21 Score=146.41 Aligned_cols=70 Identities=26% Similarity=0.363 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHHHHHh
Q 047211 34 RSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAS 108 (282)
Q Consensus 34 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~~q~~ 108 (282)
..+.++|+|+.||++|+.+||.+|..++ ||+..+|.+||.+| +|++++|++||||||+|+|++++..++.
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~~~~ 72 (80)
T 2cue_A 3 SGSSGQRNRTSFTQEQIEALEKEFERTH-YPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKLRNQR 72 (80)
T ss_dssp SCCSSCCCCCCSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhhhhcc
Confidence 3456788999999999999999999998 59999887666666 8999999999999999999998776543
No 2
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.82 E-value=8.5e-21 Score=142.82 Aligned_cols=71 Identities=24% Similarity=0.353 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHHH
Q 047211 30 GSAERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQL 105 (282)
Q Consensus 30 ~~~~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~~ 105 (282)
+........+|+|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+|+..++.
T Consensus 5 ~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 5 ANWLHARSTRKKRCPYTKHQTLELEKEFLFNM-YLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp TTSCCCCTTSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCCCCCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 44455667788999999999999999999998 59999987777777 7999999999999999999998764
No 3
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=2.2e-21 Score=146.79 Aligned_cols=68 Identities=25% Similarity=0.387 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHH
Q 047211 32 AERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQ 104 (282)
Q Consensus 32 ~~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~ 104 (282)
|+..++++|+|+.||++|+.+||.+|..++ ||+..+|.+||.+| +|++++|++||||||+|+|+++++
T Consensus 1 gs~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 1 GSSGSSGRRERTTFTRAQLDVLEALFAKTR-YPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCCCCCCCCCCSSCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHHc
Confidence 344567789999999999999999999999 59999887666665 899999999999999999997654
No 4
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4.3e-21 Score=141.65 Aligned_cols=65 Identities=25% Similarity=0.393 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 33 ERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 33 ~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
+..+.++|+|+.||++|+.+||.+|..++ ||+.++|.+||.+| +|++++|++||||||+|+|++.
T Consensus 2 s~~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 2 SSGSSGRRHRTIFTDEQLEALENLFQETK-YPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CSTTSSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH----CCCHHHeehccccccccccccC
Confidence 44556788999999999999999999998 59999998777777 7999999999999999999864
No 5
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=5.9e-21 Score=143.93 Aligned_cols=66 Identities=23% Similarity=0.329 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHH
Q 047211 34 RSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQ 104 (282)
Q Consensus 34 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~ 104 (282)
..+.++|+|+.||++|+.+||.+|..++ ||+.++|.+||.+| +|++++|++||||||+|+||+.++
T Consensus 3 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 3 SGSSGKRMRTSFKHHQLRTMKSYFAINH-NPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHHH
Confidence 3456789999999999999999999998 59999987666666 899999999999999999998654
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=3.2e-21 Score=144.91 Aligned_cols=68 Identities=29% Similarity=0.379 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 30 GSAERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 30 ~~~~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
.++....+++|.|+.||++||.+||.+|..++ ||+.++|.+||.+| +|++++|++||||||+|+||+.
T Consensus 9 ~~~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 9 TGGEEPQRDKRLRTTITPEQLEILYQKYLLDS-NPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCCCCCTTCCSSCCTTTHHHHHHHHHHCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhc
Confidence 44455667789999999999999999999998 59999988777777 7999999999999999999864
No 7
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-21 Score=142.96 Aligned_cols=66 Identities=15% Similarity=0.284 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 33 ERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 33 ~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
+..++++|+|+.||++|+.+||.+|..++ ||+.++|.+||.+| +|++++|++||||||+|+|++.+
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 2 SSGSSGKRPRTRITDDQLRVLRQYFDINN-SPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp CSSCCCCSCSCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhcc
Confidence 44567789999999999999999999998 59999988777777 89999999999999999998653
No 8
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=4.3e-21 Score=141.90 Aligned_cols=66 Identities=21% Similarity=0.335 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 32 AERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 32 ~~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
|+..+..+|+|+.||++|+.+||..|..++ ||+..+|.+||.+| +|++++|++||||||+|+|+..
T Consensus 1 Gs~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~ 66 (70)
T 2cra_A 1 GSSGSSGRKKRIPYSKGQLRELEREYAANK-FITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSG 66 (70)
T ss_dssp CCSSCCCCCSCCCSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCCCCCCcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccC
Confidence 344566788999999999999999999999 59999886666665 8999999999999999999864
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.81 E-value=1.2e-20 Score=142.04 Aligned_cols=67 Identities=22% Similarity=0.288 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHHH
Q 047211 34 RSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQL 105 (282)
Q Consensus 34 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~~ 105 (282)
...+++|.|+.||++|+.+||..|..++ ||+..+|.+||.+| +|++++|++||||||+|+|+...+.
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQR-YLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhccc
Confidence 3456688999999999999999999998 59999886666665 8999999999999999999977653
No 10
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=9.6e-21 Score=140.02 Aligned_cols=65 Identities=26% Similarity=0.376 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 33 ERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 33 ~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
+..+..+|+|+.||++|+.+||..|..++ ||+..+|.+||.+| +|++++|++||||||+|+|+..
T Consensus 2 s~~~~~~r~R~~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 2 SSGSSGKGGQVRFSNDQTIELEKKFETQK-YLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCC
Confidence 34456778999999999999999999998 59999886666666 8999999999999999999875
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-21 Score=142.40 Aligned_cols=65 Identities=25% Similarity=0.430 Sum_probs=57.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 33 ERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 33 ~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
+..+..+|+|+.||++|+.+||.+|..++ ||+.++|.+||.+| +|++++|++||||||+|+||+.
T Consensus 2 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da2_A 2 SSGSSGRSSRTRFTDYQLRVLQDFFDANA-YPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSG 66 (70)
T ss_dssp CCSCCSCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhcc
Confidence 44566788999999999999999999998 59999886666665 8999999999999999999864
No 12
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-20 Score=142.75 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 32 AERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 32 ~~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
+....+.+|+|+.||++||.+||.+|..++ ||+..+|.+||.+| +|++++|++||||||+|+||..
T Consensus 11 ~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 76 (80)
T 2dmt_A 11 GTKAKKGRRSRTVFTELQLMGLEKRFEKQK-YLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSG 76 (80)
T ss_dssp CCCCCCCCCSCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhccc
Confidence 344556789999999999999999999999 59999988777777 8999999999999999999864
No 13
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=6e-21 Score=141.11 Aligned_cols=66 Identities=20% Similarity=0.279 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 32 AERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 32 ~~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
|+..+.++|+|+.||++|+.+||.+|..++ ||+..+|.+||.+| +|++++|++||||||+|+||..
T Consensus 1 gs~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 1 GSSGSSGRKPRTIYSSFQLAALQRRFQKTQ-YLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCSCCCCCCSSCSSCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccC
Confidence 345667789999999999999999999998 59999886666655 8999999999999999999853
No 14
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=5.5e-21 Score=145.27 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 31 SAERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 31 ~~~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
.+....+.+|.|+.||++||.+||.+|..++ ||+..+|.+||.+| ||++++|++||||||+|+||.++
T Consensus 15 ~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 15 EDKVPVKKQKTRTVFSSTQLCVLNDRFQRQK-YLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp SCCCCSCSCCCSSCCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHhh
Confidence 3344556788999999999999999999998 59999886666665 89999999999999999998653
No 15
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=8.4e-21 Score=143.55 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHH
Q 047211 33 ERSTEPVRSRWTPKPEQILILESIFNSG----MVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRR 101 (282)
Q Consensus 33 ~~~~~~kR~Rt~fT~eQL~~LE~~F~~~----~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk 101 (282)
+..++++|.|+.||++|+.+||.+|+.+ + ||+.++|.+||.+| +|++++|+|||||||+|+|+.
T Consensus 3 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~-yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 3 SGSSGALQDRTQFSDRDLATLKKYWDNGMTSLG-SVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCS-HHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCC-CcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhc
Confidence 4456778999999999999999999999 7 59999987777777 799999999999999999984
No 16
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.80 E-value=5.3e-21 Score=138.17 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=50.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHH
Q 047211 37 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRR 101 (282)
Q Consensus 37 ~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk 101 (282)
+++|+|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+|++
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQK-YLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhc
Confidence 4678999999999999999999998 59999987777777 799999999999999999985
No 17
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.80 E-value=1.1e-20 Score=137.04 Aligned_cols=61 Identities=25% Similarity=0.384 Sum_probs=53.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 37 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 37 ~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
..+|+|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+|+++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNK-YISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 3578999999999999999999999 59999987777777 8999999999999999999874
No 18
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.80 E-value=1.7e-20 Score=138.23 Aligned_cols=64 Identities=33% Similarity=0.429 Sum_probs=57.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHHH
Q 047211 37 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQL 105 (282)
Q Consensus 37 ~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~~ 105 (282)
+++|+|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+|+...+.
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 1 GPRRTRTTFTSSQIAELEQHFLQGR-YLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CCSCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCCcCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhccc
Confidence 3678999999999999999999998 59999988777777 7999999999999999999987653
No 19
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.79 E-value=1.6e-20 Score=135.33 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=50.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 38 PVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 38 ~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
++|+|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENR-YLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 578999999999999999999999 59999988777777 89999999999999999987
No 20
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.79 E-value=3.9e-20 Score=140.20 Aligned_cols=65 Identities=28% Similarity=0.379 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHH
Q 047211 35 STEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQ 104 (282)
Q Consensus 35 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~ 104 (282)
..+.+|.|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+|++.+.
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQ-YPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhccc
Confidence 456688999999999999999999998 59999998777777 799999999999999999998753
No 21
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=2.4e-20 Score=132.70 Aligned_cols=57 Identities=30% Similarity=0.439 Sum_probs=52.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 39 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 39 kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
+|+|+.||++|+.+||..|..++ ||+.++|.+||.+| ||++++|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQ-YLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 57899999999999999999999 59999987666666 89999999999999999987
No 22
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=3.5e-20 Score=144.67 Aligned_cols=71 Identities=27% Similarity=0.431 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----------CCCCCCceeecccccchhhHHH
Q 047211 33 ERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKF-----------GSVGDANVFYWFQNRRSRSRRR 101 (282)
Q Consensus 33 ~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~-----------~~Lse~qVkvWFQNRRAK~KRk 101 (282)
+..++.+|.|+.||++||.+||..|+.++ ||+.++|.+|+++|... ..|++.+|++||||||+|+|++
T Consensus 2 ~~~~~~rr~R~~ft~~ql~~Le~~F~~~~-yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~ 80 (95)
T 2cuf_A 2 SSGSSGRGSRFTWRKECLAVMESYFNENQ-YPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRR 80 (95)
T ss_dssp CSSSCCCCCSCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHH
Confidence 44566788999999999999999999998 59999999999988522 2299999999999999999988
Q ss_pred HHH
Q 047211 102 QRQ 104 (282)
Q Consensus 102 ~r~ 104 (282)
.++
T Consensus 81 ~~~ 83 (95)
T 2cuf_A 81 ANI 83 (95)
T ss_dssp HHC
T ss_pred hhc
Confidence 765
No 23
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.79 E-value=1.2e-20 Score=138.70 Aligned_cols=63 Identities=27% Similarity=0.399 Sum_probs=56.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHH
Q 047211 37 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQ 104 (282)
Q Consensus 37 ~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~ 104 (282)
+++|+|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+|++++.
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNR-YPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCS-SCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhhc
Confidence 4678999999999999999999998 59999987666666 899999999999999999998764
No 24
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.79 E-value=2.4e-20 Score=145.70 Aligned_cols=69 Identities=26% Similarity=0.344 Sum_probs=57.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHHHHHh
Q 047211 35 STEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAS 108 (282)
Q Consensus 35 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~~q~~ 108 (282)
..+.+|+|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+|++..+..++
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~~~~~ 82 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQK-YLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAEEREA 82 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHHHHHH
Confidence 345678999999999999999999998 59999886555555 8999999999999999999987765543
No 25
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.78 E-value=2.6e-20 Score=137.44 Aligned_cols=61 Identities=28% Similarity=0.391 Sum_probs=55.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 38 PVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 38 ~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
.+|.|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+|++.+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~ 62 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNR-YLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENK 62 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCS-SCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCC-CCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhcc
Confidence 468899999999999999999998 59999998777777 79999999999999999999764
No 26
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.78 E-value=3.4e-20 Score=141.82 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 35 STEPVRSRWTPKPEQILILESIFNS----GMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 35 ~~~~kR~Rt~fT~eQL~~LE~~F~~----~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
..+++|.|+.||++|+.+||.+|+. ++ ||+..+|.+|+.+| +|++++|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~-yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQ-RQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCC-TTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCC-CcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 3467889999999999999999999 88 59999886666665 89999999999999999875
No 27
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=4e-20 Score=132.79 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=53.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHH
Q 047211 39 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRR 101 (282)
Q Consensus 39 kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk 101 (282)
+|+|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKEN-YVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 57899999999999999999998 59999988777777 799999999999999999985
No 28
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.78 E-value=6.9e-20 Score=136.82 Aligned_cols=63 Identities=25% Similarity=0.334 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 36 TEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 36 ~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
.+.+|+|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNK-FITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTS-CCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCC-CcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHhc
Confidence 45678999999999999999999999 59999987777777 89999999999999999998654
No 29
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.78 E-value=3.3e-20 Score=137.57 Aligned_cols=65 Identities=29% Similarity=0.399 Sum_probs=58.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 34 RSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 34 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
..+.++|.|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++.+|++||||||+|+|++.+
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r 69 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTH-YPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRER 69 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHh
Confidence 3456788999999999999999999998 59999998777777 79999999999999999998754
No 30
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.78 E-value=6.2e-20 Score=140.87 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 33 ERSTEPVRSRWTPKPEQILILESIFNS-----GMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 33 ~~~~~~kR~Rt~fT~eQL~~LE~~F~~-----~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
....+++|.|+.||++||.+|| .|.. ++ ||+..+|.+|+.+| +|++++|+|||||||+|+|+
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~-yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 12 SSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQ-KHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCC-SSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCC-CCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 3455678999999999999999 7999 88 59999886666665 89999999999999999875
No 31
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.78 E-value=2.8e-20 Score=135.87 Aligned_cols=61 Identities=18% Similarity=0.371 Sum_probs=55.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 37 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 37 ~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
+++|+|+.||++|+.+||..|..++ ||+.++|.+||.+| ||++.+|++||||||+|+|++.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANP-RPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHh
Confidence 3578999999999999999999998 59999987777777 7999999999999999999864
No 32
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-20 Score=137.66 Aligned_cols=62 Identities=29% Similarity=0.445 Sum_probs=56.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHH
Q 047211 38 PVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQ 104 (282)
Q Consensus 38 ~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~ 104 (282)
.+|+|+.||++|+.+||..|..++ ||+.++|.+||.+| ||++++|++||||||+|+|++.++
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNC-YPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhchh
Confidence 368899999999999999999998 59999988777777 799999999999999999987654
No 33
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.77 E-value=3.4e-20 Score=141.20 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=52.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 36 TEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 36 ~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
+..+|.|+.||.+|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+||+.+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNH-YLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhcc
Confidence 45678999999999999999999999 59999987777777 79999999999999999998754
No 34
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.77 E-value=2.7e-20 Score=143.28 Aligned_cols=64 Identities=27% Similarity=0.371 Sum_probs=52.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 34 RSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 34 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
..++.+|.|+.||.+||.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+||+.
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNR-YLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 3456788999999999999999999998 59999887666666 8999999999999999999864
No 35
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.77 E-value=5.2e-20 Score=132.19 Aligned_cols=58 Identities=26% Similarity=0.375 Sum_probs=48.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 41 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 41 ~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
+|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+|++++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTH-YPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCC-CcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhcc
Confidence 589999999999999999998 59999988777777 89999999999999999999764
No 36
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.77 E-value=5.5e-20 Score=135.45 Aligned_cols=62 Identities=21% Similarity=0.329 Sum_probs=56.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHH
Q 047211 38 PVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQ 104 (282)
Q Consensus 38 ~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~ 104 (282)
.+|+|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+|+..++
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQK-YLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhhH
Confidence 468899999999999999999999 59999987777777 799999999999999999998754
No 37
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.1e-19 Score=136.62 Aligned_cols=61 Identities=25% Similarity=0.340 Sum_probs=54.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 38 PVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 38 ~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
.+++|..||++||.+||..|..++ ||+..+|.+||.+| +|++++|++||||||+|+|++++
T Consensus 7 ~~~kr~~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (75)
T 2da5_A 7 GPTKYKERAPEQLRALESSFAQNP-LPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEET 67 (75)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSC
T ss_pred CCCCCccCCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhh
Confidence 345688899999999999999999 59999987777777 89999999999999999998764
No 38
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=7.9e-20 Score=143.15 Aligned_cols=64 Identities=28% Similarity=0.435 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHH
Q 047211 36 TEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQ 104 (282)
Q Consensus 36 ~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~ 104 (282)
+.++|+|+.||.+||.+||..|..++ ||+..+|.+||.+| +|++++|++||||||+|+|++.++
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNK-YLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhcc
Confidence 56788999999999999999999998 59999998777777 799999999999999999998753
No 39
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=5e-20 Score=138.32 Aligned_cols=65 Identities=22% Similarity=0.302 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 34 RSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 34 ~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
....+.+.|+.||++||.+||..|..++ ||+..+|.+||++| +|++++|++||||||+|+||+.+
T Consensus 4 ~~~~~~~~R~~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~ 68 (76)
T 2dn0_A 4 GSSGASIYKNKKSHEQLSALKGSFCRNQ-FPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKG 68 (76)
T ss_dssp SCSCCCCCCCCCCHHHHHHHHHHHHHSS-SCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCS
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhcc
Confidence 3445667799999999999999999999 59999987777777 89999999999999999998654
No 40
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.76 E-value=1.3e-19 Score=127.86 Aligned_cols=57 Identities=26% Similarity=0.358 Sum_probs=52.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhH
Q 047211 38 PVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSR 99 (282)
Q Consensus 38 ~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~K 99 (282)
.+|.|+.||++|+.+||..|..++ ||+..+|.+||.+| ||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQR-YLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 367899999999999999999998 59999987777777 7999999999999999986
No 41
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=2e-19 Score=133.57 Aligned_cols=59 Identities=24% Similarity=0.315 Sum_probs=53.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 39 VRSRWTPKPEQILILESIFNS-GMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 39 kR~Rt~fT~eQL~~LE~~F~~-~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
.+.|+.||++|+.+||..|.. ++ ||+..+|.+||.+| ||++++|++||||||+|+|++.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCC-CCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhc
Confidence 467999999999999999996 88 69999998777777 7999999999999999999976
No 42
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=1.5e-19 Score=134.72 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=53.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 39 VRSRWTPKPEQILILESIFNS-GMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 39 kR~Rt~fT~eQL~~LE~~F~~-~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
++.|+.||++|+.+||..|.. ++ ||+..+|.+||.+| ||++++|++||||||+|+|++.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~-yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNK-HPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999995 88 69999998777777 7999999999999999999976
No 43
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.75 E-value=1.9e-19 Score=133.81 Aligned_cols=63 Identities=19% Similarity=0.342 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 36 TEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 36 ~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
..+++.|+.||++|+.+||..|..++ ||+..+|.+||.+| +|++++|++||||||+|+||.+.
T Consensus 4 ~~~~~~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 4 PDSFGIRAKKTKEQLAELKVSYLKNQ-FPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCCCCTTCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCc
Confidence 45678899999999999999999998 59999987777777 89999999999999999998653
No 44
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.75 E-value=1.6e-19 Score=129.60 Aligned_cols=59 Identities=22% Similarity=0.370 Sum_probs=46.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhH
Q 047211 36 TEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSR 99 (282)
Q Consensus 36 ~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~K 99 (282)
.+++|+|+.||++|+.+||..|..++ ||+.++|..||.+| ||++.+|++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~-yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQ-SLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCC-CcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 35678999999999999999999998 59999998777777 7999999999999999986
No 45
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=5.2e-19 Score=142.69 Aligned_cols=70 Identities=27% Similarity=0.429 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-------------C----CCCCCceeecccccchhh
Q 047211 36 TEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKF-------------G----SVGDANVFYWFQNRRSRS 98 (282)
Q Consensus 36 ~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~-------------~----~Lse~qVkvWFQNRRAK~ 98 (282)
++.+|.|+.||++|+.+||..|+.++ ||+.++|.+|+++|.+. + .|++.+|++||||||+|+
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45688999999999999999999999 69999999999999532 2 699999999999999999
Q ss_pred HHHHHHHH
Q 047211 99 RRRQRQLQ 106 (282)
Q Consensus 99 KRk~r~~q 106 (282)
|++++...
T Consensus 83 kr~~~~~~ 90 (102)
T 2da6_A 83 AFRQKLAM 90 (102)
T ss_dssp HHHHHHHH
T ss_pred HHhhHhhh
Confidence 98876543
No 46
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.74 E-value=3.2e-19 Score=126.88 Aligned_cols=54 Identities=35% Similarity=0.432 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHH
Q 047211 43 WTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRR 101 (282)
Q Consensus 43 t~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk 101 (282)
+.||++|+.+||..|..++ ||+..+|.+||.+| ||++++|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQK-YLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcC-CcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 5799999999999999998 59999987777777 799999999999999999986
No 47
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.74 E-value=3e-19 Score=136.45 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=56.4
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHHHHH
Q 047211 38 PVRSRWTPKPEQILILESIF---NSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQA 107 (282)
Q Consensus 38 ~kR~Rt~fT~eQL~~LE~~F---~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~~q~ 107 (282)
++|+|+.||++|+.+||..| ..++ ||+.++|.+|+.+| ||+++||++||||||+|+|++..+...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~-yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~~~~ 68 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKFQE 68 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSC-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGGGGHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhccccccc
Confidence 36889999999999999999 7888 69999998777777 899999999999999999998766544
No 48
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=6.5e-19 Score=130.88 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 32 AERSTEPVRSRWTPKPEQILILESIFNS---GMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 32 ~~~~~~~kR~Rt~fT~eQL~~LE~~F~~---~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
|+..+..+|+|+.|+++|+.+||..|.. ++ ||+.++|.+||.+| ||+++||++||||||+|+|+..
T Consensus 1 G~~~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 1 GSSGSSGKNKRGVLPKHATNVMRSWLFQHIGHP-YPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCCCSSSCCSSCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccc
Confidence 3445667889999999999999999987 77 69999997777777 8999999999999999999865
No 49
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.73 E-value=3.2e-19 Score=139.63 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHHH
Q 047211 31 SAERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQL 105 (282)
Q Consensus 31 ~~~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~~ 105 (282)
.+...+..+|+|+.||++|+.+||..|..++ ||+..+|.+|+.+| +|++++|++||||||+|+||...+-
T Consensus 18 ~p~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~lk~ 87 (96)
T 3nar_A 18 GPAPKSGSTGKICKKTPEQLHMLKSAFVRTQ-WPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGNLKW 87 (96)
T ss_dssp ---------CCSSSSCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhcccH
Confidence 3344455678999999999999999999998 59999987777777 8999999999999999999976444
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.73 E-value=3.8e-19 Score=132.14 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=56.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHHH
Q 047211 38 PVRSRWTPKPEQILILESIF---NSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQL 105 (282)
Q Consensus 38 ~kR~Rt~fT~eQL~~LE~~F---~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~~ 105 (282)
++|+|+.||++|+.+||..| ..++ ||+.++|.+||.+| ||++.+|++||||||+|+|++..+.
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCC-CcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcccccccc
Confidence 46889999999999999999 8888 59999998777777 8999999999999999999876553
No 51
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.72 E-value=5.8e-19 Score=127.97 Aligned_cols=59 Identities=20% Similarity=0.280 Sum_probs=53.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 37 EPVRSRWTPKPEQILILESIF---NSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 37 ~~kR~Rt~fT~eQL~~LE~~F---~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
.++|+|+.||++|+.+||..| ..++ ||+.++|.+||.+| ||++.||++||||||+|+||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNP-YPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 457889999999999999999 7888 59999998777777 79999999999999999986
No 52
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.72 E-value=5.4e-19 Score=140.89 Aligned_cols=69 Identities=25% Similarity=0.389 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc--------------CC---CCCCceeecccccchhh
Q 047211 36 TEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKF--------------GS---VGDANVFYWFQNRRSRS 98 (282)
Q Consensus 36 ~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~--------------~~---Lse~qVkvWFQNRRAK~ 98 (282)
.+.+|.|+.||++||.+||.+|+.++ ||+..+|.+|++++... +| |++.+|++||||||+|+
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~-yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 45678999999999999999999998 59999999998885532 67 99999999999999999
Q ss_pred HHHHHHH
Q 047211 99 RRRQRQL 105 (282)
Q Consensus 99 KRk~r~~ 105 (282)
|++++..
T Consensus 86 k~k~~~~ 92 (99)
T 1lfb_A 86 AFRHKLA 92 (99)
T ss_dssp SCCC---
T ss_pred HHhchhh
Confidence 8877544
No 53
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=1.7e-18 Score=132.94 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=52.3
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHH
Q 047211 40 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQ 104 (282)
Q Consensus 40 R~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~ 104 (282)
+.|..||++||.+||..|..++ ||+.++|.+||++| ||+++||++||||||+|+|+...+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~-YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQ-WARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHHHH
Confidence 4577899999999999999999 59999986666555 899999999999999999987543
No 54
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.72 E-value=4.8e-19 Score=148.52 Aligned_cols=62 Identities=27% Similarity=0.366 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHH
Q 047211 35 STEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRR 101 (282)
Q Consensus 35 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk 101 (282)
..+++|+|+.||++|+.+||..|..++ ||+..+|.+||++| +|++++|++||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEHS-KPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHcC-CCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 346678899999999999999999999 59999998777777 799999999999999999985
No 55
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-18 Score=130.67 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=56.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 33 ERSTEPVRSRWTPKPEQILILESIFNS---GMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 33 ~~~~~~kR~Rt~fT~eQL~~LE~~F~~---~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
+..+..+|+|+.|+.+|+.+||..|.. ++ ||+.++|.+||.+| +|+++||++||||||+|+|+...
T Consensus 2 s~~~~~rk~R~~~s~~q~~~L~~~f~~~~~~p-YPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 2 SSGSSGKKRKGNLPAESVKILRDWMYKHRFKA-YPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCCCCCSSCCHHHHHHHHHHHHHTTTTC-CCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHHH
Confidence 345566789999999999999999987 46 69999997777776 89999999999999999988644
No 56
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.71 E-value=8.3e-19 Score=148.69 Aligned_cols=62 Identities=21% Similarity=0.371 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHH
Q 047211 35 STEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRR 101 (282)
Q Consensus 35 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk 101 (282)
..+++|+|+.||++|+.+||..|..++ ||+..+|.+||++| ||++++|++||||||+|+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQ-KPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 346788999999999999999999998 59999998777777 799999999999999999985
No 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.70 E-value=3e-18 Score=143.67 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 33 ERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 33 ~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
.+.++++|+|+.||.+|+.+||..|..++ ||+..+|.+||++| ||++++|++||||||+|+||
T Consensus 88 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 88 GEPSKKRKRRTSFTPQAIEALNAYFEKNP-LPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SSCCCCCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 44567788999999999999999999998 59999998777777 79999999999999999986
No 58
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.70 E-value=2.6e-18 Score=123.08 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=50.4
Q ss_pred CCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 41 SRWTPKPEQILILESIFNS---GMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 41 ~Rt~fT~eQL~~LE~~F~~---~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
+|+.||++|+.+||..|.. ++ ||+.++|.+||.+| ||++++|++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~-yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCC-CcCHHHHHHHHHHH----CcCHHHHHHHHHHHHccccc
Confidence 4789999999999999999 88 69999987777777 89999999999999999986
No 59
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.69 E-value=1e-18 Score=149.38 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=50.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHH
Q 047211 35 STEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQ 104 (282)
Q Consensus 35 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~ 104 (282)
..+++|+|+.||.+|+.+||.+|..++ ||+..+|.+||++| +|++++|++||||||+|+||..+.
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~-yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCP-KPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhccCC
Confidence 456788999999999999999999998 59999998777777 799999999999999999997643
No 60
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.69 E-value=4.6e-18 Score=130.55 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 36 TEPVRSRWTPKPEQILILESIFNS---GMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 36 ~~~kR~Rt~fT~eQL~~LE~~F~~---~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
+.++|+|+.||++|+.+||..|.. ++ ||+.++|.+||.+| ||+++||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~-yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSC-CCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCC-CcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccC
Confidence 345677999999999999999999 88 59999997777777 89999999999999999973
No 61
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.5e-18 Score=135.06 Aligned_cols=55 Identities=16% Similarity=0.323 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
.||.+||.+||..|..++ ||+..+|.+||.+| ||+++||+|||||||+|+|++++
T Consensus 17 ~~t~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSS-VLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCS
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHH
Confidence 899999999999999999 59999887666665 89999999999999999988664
No 62
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=6.3e-18 Score=128.68 Aligned_cols=63 Identities=21% Similarity=0.311 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhH
Q 047211 32 AERSTEPVRSRWTPKPEQILILESIFNS-GMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSR 99 (282)
Q Consensus 32 ~~~~~~~kR~Rt~fT~eQL~~LE~~F~~-~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~K 99 (282)
|+..+.++|.||.||.+||.+|+..|+. +. ||+.++|.+| ++.+||++++|++||||||.-.|
T Consensus 1 ~~~~~~~kR~RT~~s~eQL~~Lqs~f~~~~~-yPd~~~r~~L----a~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 1 GSSGSSGPRSRTKISLEALGILQSFIHDVGL-YPDQEAIHTL----SAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCCCCCSHHHHHHHHHHHHHCS-CCCHHHHHHH----HHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCCCccCCHHHHHHHHHHHHhcCC-CCCHHHHHHH----HHHhCCCHHHHHHhhccceeeec
Confidence 3456688999999999999999999999 98 5998877555 45558999999999999997544
No 63
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=2.3e-18 Score=129.29 Aligned_cols=58 Identities=21% Similarity=0.335 Sum_probs=50.3
Q ss_pred CCCCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHH
Q 047211 39 VRSRWTPKPEQILILESIF-NSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRR 101 (282)
Q Consensus 39 kR~Rt~fT~eQL~~LE~~F-~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk 101 (282)
.+.|.+++++|+.+||.+| ..++ ||+..+|.+||.+| +|++++|++||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~-yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTK-YPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCS-SCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCC
Confidence 4567778899999999999 8888 69999886666665 899999999999999999863
No 64
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=6.2e-18 Score=131.24 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=51.4
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHH
Q 047211 41 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQ 104 (282)
Q Consensus 41 ~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~ 104 (282)
++..||++||.+||..|..++ ||+..+|.+||.+| +|++++|++||||||+|+|++++.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~-yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSS-FPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred ccccCCHHHHHHHHHHHccCC-CCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhHh
Confidence 345599999999999999998 59999987777777 899999999999999998876643
No 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=6.6e-18 Score=124.40 Aligned_cols=55 Identities=16% Similarity=0.285 Sum_probs=49.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 41 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 41 ~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
.+..++++|+.+||.+|..++ ||+..+|.+||++| +|++++|++||||||||+++
T Consensus 6 ~~~~p~~~Ql~~Le~~F~~~~-yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 6 SGQPPLKNLLSLLKAYYALNA-QPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp SCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCCccHHHHHHHHHHHhcCC-CcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 456678999999999999998 59999987777777 79999999999999999886
No 66
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.67 E-value=1.2e-17 Score=127.58 Aligned_cols=60 Identities=18% Similarity=0.178 Sum_probs=51.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 39 VRSRWTPKPEQILILESIFNS---GMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 39 kR~Rt~fT~eQL~~LE~~F~~---~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
+++|++||.+|+.+||..|.. ++ ||+.++|.+||.+| ||+++||++||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~-yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENP-YLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSC-CCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCC-CcCHHHHHHHHHHH----CCCHHHcccccHHHHcccccccc
Confidence 345777999999999999999 88 59999987777777 89999999999999999998643
No 67
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.66 E-value=1.3e-17 Score=140.86 Aligned_cols=64 Identities=25% Similarity=0.320 Sum_probs=52.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 35 STEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 35 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
...++|+|+.||++|+.+||..|..++ ||+.++|.+||.+| ||++++|++||||||+|+|+...
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~-yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKENK-RPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccCC
Confidence 345688999999999999999999998 59999998777777 79999999999999999997653
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.65 E-value=1.8e-17 Score=140.07 Aligned_cols=61 Identities=25% Similarity=0.383 Sum_probs=54.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHH
Q 047211 36 TEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRR 101 (282)
Q Consensus 36 ~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk 101 (282)
.+++|+|+.||++|+.+||..|..++ ||+..+|.+||.+| +|++++|++||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~-yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSP-KPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCS-CCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCC-CCCHHHHHHHHHHc----CCChhheeeccccccccccCC
Confidence 46788999999999999999999998 59999887666666 899999999999999999974
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-17 Score=124.88 Aligned_cols=55 Identities=29% Similarity=0.443 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHH
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQR 103 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r 103 (282)
..|++|+.+||..|..++ ||+..+|.+||.+| +|++++|++||||||+|+||+++
T Consensus 10 ~~t~~ql~~LE~~F~~~~-yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQK-YLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CCCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSS
T ss_pred cCCHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhh
Confidence 579999999999999999 59999886666665 89999999999999999998653
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.64 E-value=4.3e-17 Score=122.59 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 46 KPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 46 T~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
|.+||.+||..|..++ ||+..+|.+||..| ||++++|++||||||+|+|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~-YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQ-FPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGG-SCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCC-CCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 6899999999999999 59999998777777 8999999999999999999764
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.61 E-value=4e-17 Score=121.62 Aligned_cols=49 Identities=22% Similarity=0.418 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 47 PEQILILESIFN-SGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 47 ~eQL~~LE~~F~-~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
++|+.+||.+|. .++ ||+..+|.+||++| +|+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~-yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITK-HPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCS-SCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCC-CcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCC
Confidence 568999999995 566 69999887777777 89999999999999999985
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.54 E-value=7.2e-16 Score=113.97 Aligned_cols=58 Identities=14% Similarity=0.132 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHh---cCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHHHH
Q 047211 44 TPKPEQILILESIFN---SGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQ 106 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~---~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~~q 106 (282)
.|+++|+.+||..|. .++ ||+.++|.+||.++ ||+++||++||||||+|.|+...+..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~p-yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~~~ 64 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHP-YPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPMIDQS 64 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSC-CCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC----
T ss_pred cCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHHHHHh
Confidence 689999999999999 888 59999987777776 89999999999999999998766543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.51 E-value=9e-16 Score=135.26 Aligned_cols=65 Identities=28% Similarity=0.450 Sum_probs=52.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-------------CC----CCCCceeecccccchhh
Q 047211 36 TEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKF-------------GS----VGDANVFYWFQNRRSRS 98 (282)
Q Consensus 36 ~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~-------------~~----Lse~qVkvWFQNRRAK~ 98 (282)
.+.+|.|+.||+.|+.+||..|+.++ ||+..+|.+|+++|... +- |++.+|++||||||+|+
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~-yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQK-NPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHC-CCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 35678999999999999999999998 59999999999988520 00 99999999999999998
Q ss_pred HHH
Q 047211 99 RRR 101 (282)
Q Consensus 99 KRk 101 (282)
|.+
T Consensus 192 k~~ 194 (194)
T 1ic8_A 192 AFR 194 (194)
T ss_dssp C--
T ss_pred hcC
Confidence 864
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.41 E-value=4.7e-14 Score=127.05 Aligned_cols=64 Identities=25% Similarity=0.429 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhc-----------------CCCCCCceeecccccchh
Q 047211 35 STEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKF-----------------GSVGDANVFYWFQNRRSR 97 (282)
Q Consensus 35 ~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~-----------------~~Lse~qVkvWFQNRRAK 97 (282)
..+.+|.|+.|+++|+.+||..|+.++ ||+..+|.+|+++|... ..|++.+|++||||||++
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~-YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~ 217 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQK-NPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 217 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCS-SCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTT
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhh
Confidence 456789999999999999999999998 59999999999998742 248999999999999998
Q ss_pred hH
Q 047211 98 SR 99 (282)
Q Consensus 98 ~K 99 (282)
+.
T Consensus 218 ~~ 219 (221)
T 2h8r_A 218 EA 219 (221)
T ss_dssp CC
T ss_pred hh
Confidence 64
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=8.2e-14 Score=106.19 Aligned_cols=46 Identities=22% Similarity=0.479 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchh
Q 047211 47 PEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSR 97 (282)
Q Consensus 47 ~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK 97 (282)
++|+..||++|..++ +|+.++|.+||+.| ||++++|++||||||++
T Consensus 14 k~ql~~Lk~yF~~n~-~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNM-EPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCS-SCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 789999999999999 59999998888888 79999999999999974
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.34 E-value=7.8e-14 Score=127.14 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=50.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhH
Q 047211 39 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSR 99 (282)
Q Consensus 39 kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~K 99 (282)
++.|..++.+|+.+||+.|..++ ||+..+|.+|+++| +|+++||++||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~-yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQ-SLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCS-CCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCC-CcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 46788999999999999999998 59999987777777 8999999999999999986
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.29 E-value=6.3e-13 Score=104.91 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=49.2
Q ss_pred CCCCHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHHH
Q 047211 43 WTPKPEQILILESIFNS---GMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQL 105 (282)
Q Consensus 43 t~fT~eQL~~LE~~F~~---~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~~ 105 (282)
.-|+++++++|+.-|.. ++ ||+.++|.+||++ +||+++||++||||||.|.|+...+.
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~np-YPs~~ek~~LA~~----tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNA-YPSEQEKALLSQQ----THLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGG-SCCHHHHHHHHHH----SSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCC-CCCHHHHHHHHHH----HCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 46899999999999987 67 6999988655555 58999999999999999999876554
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.84 E-value=2.3e-10 Score=77.31 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.6
Q ss_pred CceeecccccchhhHHHHHHHHH
Q 047211 85 ANVFYWFQNRRSRSRRRQRQLQA 107 (282)
Q Consensus 85 ~qVkvWFQNRRAK~KRk~r~~q~ 107 (282)
+||+|||||||||+||++++.+.
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~~ 23 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDAR 23 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHTT
T ss_pred CCceeccHHHHHHHHHHhHHHHH
Confidence 58999999999999999998654
No 79
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=81.50 E-value=1.3 Score=34.07 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=42.1
Q ss_pred ceEEEEECCeeeeecCc---ccchhhccC--CceEEEecCCCccccCCccccccccCCcceEEEee
Q 047211 219 GFITVFINGAPTEIPRG---PIDMKALFG--QDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVS 279 (282)
Q Consensus 219 g~~tVfINgv~~EV~~G---p~dvr~~FG--~davLvhSsG~pvptne~Gvt~~sLq~G~~Y~Lv~ 279 (282)
..|+|.|||.++|++.| --||.+.+| .+.|.|==.|++||-++|.=+ .|+-|..--+|+
T Consensus 19 ~~M~I~vNGe~~el~~~~~Tv~dLL~~L~~~~~~vaVavNg~iV~~~~~~~~--~L~dGD~Vei~~ 82 (87)
T 1tyg_B 19 GRHMLQLNGKDVKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKERYHEV--ELCDRDVIEIVH 82 (87)
T ss_dssp ---CEEETTEEECCSSSCCBHHHHHHHTTCTTSCCEEEETTEEECGGGTTTS--BCCSSSEEEEEE
T ss_pred cceEEEECCEEEECCCCCCcHHHHHHHhCCCCCCEEEEECCEECChhhcCCc--CCCCCCEEEEEc
Confidence 46899999999999987 256666666 344556667888888888643 588887776665
No 80
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.04 E-value=0.46 Score=35.97 Aligned_cols=43 Identities=21% Similarity=0.396 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 047211 45 PKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQ 92 (282)
Q Consensus 45 fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQ 92 (282)
.++--.+.|+.+|...+. +..+.. .+|..+.+|+-.||+-||-
T Consensus 13 ~~p~~~e~L~~Yy~~hk~-L~EeDl----~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQQ-LRETDI----PQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCCCCCHHHHHHHHHTCC-CCTTHH----HHHHHHTTCCHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhcc-cchhhH----HHHHHHhCCCHHHHHHHHH
Confidence 344556899999999874 776654 6777788999999999994
No 81
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=74.03 E-value=0.056 Score=44.81 Aligned_cols=30 Identities=0% Similarity=-0.250 Sum_probs=20.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhcCCCCCCH
Q 047211 36 TEPVRSRWTPKPEQILILESIFNSGMVNPPK 66 (282)
Q Consensus 36 ~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~ 66 (282)
...+|+|+.||.+||++|++.|+.++ ||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~-~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANP-VEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCC-CCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCC-Cccc
Confidence 56689999999999999999999987 4753
No 82
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=72.11 E-value=2.2 Score=26.95 Aligned_cols=43 Identities=12% Similarity=0.294 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccch
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRS 96 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRA 96 (282)
.+++++++.+...+..+. +. .+|++.+|++...|..|+.....
T Consensus 5 ~~~~~~~~~i~~l~~~g~---s~-------~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 5 AINKHEQEQISRLLEKGH---PR-------QQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SSCTTHHHHHHHHHHTTC---CH-------HHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCCHHHHHHHHHHHHcCC---CH-------HHHHHHHCCCHHHHHHHHHHccc
Confidence 466777777666676542 21 35555568999999999975543
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=71.85 E-value=2 Score=31.64 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
.+++.|.++|.-.|..+. . -.+||+.| |+++..|+.+...=|.|.|+..
T Consensus 37 ~L~~~~r~vl~l~~~~g~--s----~~eIA~~l----gis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGW--S----TAQIATDL----GIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSCC--C----HHHHHHHH----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--C----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHHH
Confidence 467888888888776653 2 13466666 8999999988766555555544
No 84
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=68.50 E-value=5.1 Score=28.76 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=40.7
Q ss_pred eEEEEECCee----eeecCcc--cchhhccC--CceEEEecCCCccccCCccccccccCCcceEEEeec
Q 047211 220 FITVFINGAP----TEIPRGP--IDMKALFG--QDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVSR 280 (282)
Q Consensus 220 ~~tVfINgv~----~EV~~Gp--~dvr~~FG--~davLvhSsG~pvptne~Gvt~~sLq~G~~Y~Lv~~ 280 (282)
.|+|.|||.+ +|++.|. -||....| .+.++|-=.|+.|+-++ .|+.|..--+++.
T Consensus 4 ~m~i~vNg~~~~~~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~~~v~~~~------~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 4 GMKFTVITDDGKKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEE------EIFDGDIIEVIRV 66 (70)
T ss_dssp CEEEEEEETTEEEEEEESSCCBHHHHHHHTTCCTTTEEEEETTEECCTTS------BCCTTCEEEEEEC
T ss_pred eEEEEEeCccCceeEECCCCCcHHHHHHHhCCCCCCEEEEECCEECCCcc------cCCCCCEEEEEec
Confidence 4889999999 9998864 56666665 34455666788888776 8999887777653
No 85
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=63.78 E-value=4.1 Score=30.01 Aligned_cols=43 Identities=12% Similarity=0.207 Sum_probs=28.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecc
Q 047211 39 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWF 91 (282)
Q Consensus 39 kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWF 91 (282)
++.|..|++++....-..+..+. + ..+|+++| ||+...|..|.
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g~---s---~~~iA~~~----gIs~sTl~rW~ 59 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDGE---S---KASVARDI----GVPESTLRGWC 59 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHTC---C---HHHHHHHH----TCCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCC---C---HHHHHHHH----CcCHHHHHHHH
Confidence 34567889998655555565542 2 23455555 89999999995
No 86
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=62.98 E-value=4.1 Score=27.86 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 047211 42 RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQ 92 (282)
Q Consensus 42 Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQ 92 (282)
|..||+|.......++..+. ....... ++++.+||+...|..|..
T Consensus 3 r~~ys~efK~~~~~~~~~g~--s~~~~~~----~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRNDN--DCKGNQR----ATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHCT--TTTTCHH----HHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcCC--CcchHHH----HHHHHHCcCHHHHHHHHH
Confidence 55799999887766666652 2101122 444455899999999954
No 87
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=62.96 E-value=5.1 Score=30.46 Aligned_cols=40 Identities=30% Similarity=0.534 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHHHHHh
Q 047211 50 ILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAS 108 (282)
Q Consensus 50 L~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~~q~~ 108 (282)
++++.-.|+.|+ ||+++-..+ +. -|||-|||++++|...-
T Consensus 18 vRiIkiLyQSNP-~P~p~GTrq-aR-----------------RNRRRRWR~RQrQI~~i 57 (72)
T 3lph_A 18 VRLIKFLYQSNP-PPNPEGTRQ-AR-----------------RNRRRRWRERQRQIHSI 57 (72)
T ss_dssp HHHHHHHHHTCC-CCCCCSCHH-HH-----------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-CCCCCCchH-HH-----------------HHHHHHHHHHHHHHHHH
Confidence 466777899998 588764321 11 28999999999998654
No 88
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=61.22 E-value=3 Score=34.21 Aligned_cols=40 Identities=30% Similarity=0.484 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHHHHHh
Q 047211 50 ILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAS 108 (282)
Q Consensus 50 L~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~~q~~ 108 (282)
++++.-.|+.|+ ||+++-.. |-. -|||-|||++++|...-
T Consensus 15 vRiIkiLyQSNP-yP~peGTR---------------qaR---RNRRRRWR~RQrQI~~i 54 (115)
T 2x7l_M 15 VRLIKFLYQSNP-PPNPEGTR---------------QAR---RNRRRRWRERQRQIHSI 54 (115)
T ss_dssp HHHHHHHHHSSC-CCCCCCCT---------------TTH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCC-CCCCCCch---------------hhh---HhHHHHHHHHHHHHHHH
Confidence 456677799998 58875321 111 38999999999998764
No 89
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=60.22 E-value=3.9 Score=31.44 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhh
Q 047211 40 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRS 98 (282)
Q Consensus 40 R~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~ 98 (282)
++|..||.|+...+-..+..+. .+.. .+||+++ ||+...|..|..+++...
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g-~~~~---~~~A~~~----gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENP-DLRK---GEIARRF----NIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCT-TSCH---HHHHHHH----TCCHHHHHHHHHTHHHHH
T ss_pred CcceeCCHHHHHHHHHHHHHCC-CCcH---HHHHHHh----CCCHHHHHHHHhchhhhc
Confidence 4688999999977777764432 2332 2355555 899999999987665543
No 90
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=59.37 E-value=14 Score=25.71 Aligned_cols=53 Identities=19% Similarity=0.372 Sum_probs=39.2
Q ss_pred EEEEE-CCeeeeecCc--ccchhhccC----CceEEEecCCCccccCCccccccccCCcceEEEee
Q 047211 221 ITVFI-NGAPTEIPRG--PIDMKALFG----QDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVS 279 (282)
Q Consensus 221 ~tVfI-Ngv~~EV~~G--p~dvr~~FG----~davLvhSsG~pvptne~Gvt~~sLq~G~~Y~Lv~ 279 (282)
|+|++ ||...|+|.| +.|+...++ .++|.+-=.|++++.+ .+|+.|..--+|.
T Consensus 3 i~i~~p~g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~------~~L~~~~~Veivt 62 (73)
T 2kmm_A 3 VMVFTPKGEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLS------YVLNSGDQVEVLS 62 (73)
T ss_dssp EEEECTTCCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTT------CBCCSSSBEEEEE
T ss_pred EEEEcCCCCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCC------cCcCCCCEEEEEE
Confidence 67777 9999999976 578877764 6688876689888886 5777776544443
No 91
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=57.42 E-value=6.3 Score=24.17 Aligned_cols=40 Identities=5% Similarity=0.045 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQN 93 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQN 93 (282)
.+++++...+...+..+. + ..+||+.| +++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g~---s---~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLNV---S---LHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTTC---C---HHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcCC---C---HHHHHHHH----CcCHHHHHHHHhh
Confidence 467887766666666653 2 23566666 7999999999754
No 92
>3f6y_A ADP-ribosyl cyclase 1; calcium loaded structure, active site closure, inhibitory conformation, alternative splicing, diabetes mellitus; 1.45A {Homo sapiens} SCOP: c.23.14.3 PDB: 2o3s_A* 3dzh_A* 2i67_A* 2pgj_A* 3dzf_A* 2i66_A* 3dzg_A* 3dzi_A* 3dzk_A* 3i9m_A* 3i9n_A* 3u4h_A* 3u4i_A* 2o3t_A* 2o3q_A* 2i65_A* 2o3u_A* 2pgl_A* 2o3r_A* 2hct_A* ...
Probab=57.04 E-value=5 Score=36.96 Aligned_cols=39 Identities=15% Similarity=0.350 Sum_probs=32.4
Q ss_pred eceEEEEECCeeeeecCcccchhhccCC--------------ceEEEecCCCccccCC
Q 047211 218 TGFITVFINGAPTEIPRGPIDMKALFGQ--------------DVVLVHSSGVPIPTNE 261 (282)
Q Consensus 218 ~g~~tVfINgv~~EV~~Gp~dvr~~FG~--------------davLvhSsG~pvptne 261 (282)
.|.++|++||- ++ +|||...+||+ .+.|||.-|.| +.+-
T Consensus 163 ~G~V~VmLNGS---~~-~af~~~S~Fg~vElpnL~~~kV~~l~iwVvh~i~~~-~~es 215 (262)
T 3f6y_A 163 CDVVHVMLDGS---RS-KIFDKDSTFGSVEVHNLQPEKVQTLEAWVIHGGRED-SRDL 215 (262)
T ss_dssp CEEEEEEEETT---SS-SSSCTTSHHHHTTGGGCCTTTEEEEEEEEECCSSSS-CSCG
T ss_pred CCcEEEEecCC---CC-CCcCCCCcceeeecccCCccceeEEEEEEEeCCCCC-ccCc
Confidence 58999999997 34 39999999999 99999998776 4443
No 93
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.09 E-value=6.7 Score=27.68 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCc-eeecccccch
Q 047211 37 EPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDAN-VFYWFQNRRS 96 (282)
Q Consensus 37 ~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~q-VkvWFQNRRA 96 (282)
+.++..-.+|+++.++++..|.. ||.. =..||..|. +-+..+ |..|+.+++.
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~---~gk~--w~~Ia~~l~---~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQ---HPKN--FGLIASYLE---RKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHH---STTC--HHHHHHHCT---TSCHHHHHHHHHHHTCC
T ss_pred cccccCCCCCHHHHHHHHHHHHH---hCCC--HHHHHHHcC---CCCHHHHHHHHHHhcCC
Confidence 33456678999999999999999 4653 346776664 334444 6688777654
No 94
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=54.59 E-value=3.6 Score=30.69 Aligned_cols=57 Identities=14% Similarity=0.314 Sum_probs=39.4
Q ss_pred EEEEECCeeeeec--Cc--ccchhhccCCc---eEEEecCCCccccCCccccccccCCcceEEEee
Q 047211 221 ITVFINGAPTEIP--RG--PIDMKALFGQD---VVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVS 279 (282)
Q Consensus 221 ~tVfINgv~~EV~--~G--p~dvr~~FG~d---avLvhSsG~pvptne~Gvt~~sLq~G~~Y~Lv~ 279 (282)
|+|.|||.++|++ .| --||-+.+|-+ .|.|==.|++||-++|.=+ .|+-|..--+|+
T Consensus 1 M~I~vNGe~~e~~~~~~~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~~--~L~dGD~IEIv~ 64 (78)
T 2k5p_A 1 MNLTVNGKPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDAT--TVKDGDAVEFLY 64 (78)
T ss_dssp CEEEETTEEEECSSCSCEEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHHC--EECSSBCEEECC
T ss_pred CEEEECCEEEEcCCCCCCcHHHHHHHcCCCCCCcEEEEECCEECChHHcCcc--cCCCCCEEEEEe
Confidence 5799999999998 54 35666677744 3345557899999988643 466666555544
No 95
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=54.22 E-value=6 Score=30.30 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
.+++.|.++|. .|-.+. . . .+||+.| |++...|+.+.+.=|.|.|+..
T Consensus 109 ~L~~~~r~v~~-~~~~g~--s-~---~EIA~~l----gis~~tV~~~~~ra~~~Lr~~l 156 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRGY--S-Y---REIATIL----SKNLKSIDNTIQRIRKKSEEWI 156 (164)
T ss_dssp HSCHHHHHHHH-HHTTTC--C-H---HHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcCC--C-H---HHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
Confidence 57788888888 555542 2 1 3456666 8999999887765555555443
No 96
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=54.15 E-value=3.5 Score=28.02 Aligned_cols=47 Identities=9% Similarity=-0.091 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
.+++.+.++|...|..+. . . .+||+.| |+++..|+.|...=|.|.|+
T Consensus 15 ~L~~~~r~il~l~~~~g~--s-~---~eIA~~l----gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL--S-Y---ADAAAVC----GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC--C-H---HHHHHHH----TSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcCC--C-H---HHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 467999999999877753 2 1 3466676 89999999877555444443
No 97
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=53.64 E-value=5.4 Score=30.65 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhh
Q 047211 42 RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRS 98 (282)
Q Consensus 42 Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~ 98 (282)
...+|+.|.++|+-++ .+. .. .+||+.| +|++..|+.+..+=+.|.
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G~--s~----~EIA~~L----~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EGF--LV----TEIAKKL----NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HTC--CH----HHHHHHH----TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cCC--CH----HHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 5679999999998866 443 21 4567777 799999998876544443
No 98
>3gc6_A ECTO-NAD+ glycohydrolase (CD38 molecule); cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG; 1.51A {Bos taurus} SCOP: c.23.14.3 PDB: 3ghh_A* 3kou_A* 3gh3_A*
Probab=53.61 E-value=6.8 Score=35.75 Aligned_cols=39 Identities=31% Similarity=0.673 Sum_probs=32.2
Q ss_pred eceEEEEECCeeeeecCcccchhhccCC------------ceEEEecCCCccccCC
Q 047211 218 TGFITVFINGAPTEIPRGPIDMKALFGQ------------DVVLVHSSGVPIPTNE 261 (282)
Q Consensus 218 ~g~~tVfINgv~~EV~~Gp~dvr~~FG~------------davLvhSsG~pvptne 261 (282)
.|.++|++||-. .||||.+.+||. .+.|||.-|.| +.+-
T Consensus 162 ~G~V~VmLNGS~----~~af~~~S~Fg~vElpnL~~~k~l~i~Vvh~i~~~-~~es 212 (247)
T 3gc6_A 162 CNTVRVVLNGSL----ENAFDSMSIFGRVQAPNLRPQVELEAWLVHDTGKP-PSDS 212 (247)
T ss_dssp CSEEEEEEETTS----SCSCCTTSHHHHTTGGGCCTTCEEEEEEEECTTSC-CSCC
T ss_pred CCcEEEEecCCC----CCCcCCCCcceeeeccCCCCCceEEEEEEeCCCCC-ccCc
Confidence 589999999986 599999999993 48999997776 4443
No 99
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=52.84 E-value=5.6 Score=28.01 Aligned_cols=57 Identities=12% Similarity=0.279 Sum_probs=38.0
Q ss_pred EEEEECCeeeeecCcc--cchhhccC--CceEEEecCCCccccCCccccccccCCcceEEEee
Q 047211 221 ITVFINGAPTEIPRGP--IDMKALFG--QDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVS 279 (282)
Q Consensus 221 ~tVfINgv~~EV~~Gp--~dvr~~FG--~davLvhSsG~pvptne~Gvt~~sLq~G~~Y~Lv~ 279 (282)
|+|.|||.++|++.|. -||.+..| .+.+.|-=.|+.||-.+|.= ..|+.|..--+++
T Consensus 1 m~i~vNg~~~~~~~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~--~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILFNDQAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQ--HIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEESSCEECCCTTCCHHHHHHHHTCCCSSEEEEETTEEECHHHHTT--CCCCTTEEECEEE
T ss_pred CEEEECCEEEEcCCCCcHHHHHHHcCCCCCCEEEEECCEECCchhcCC--cCCCCCCEEEEEe
Confidence 4689999999998764 55556665 33344555667777666642 3678887666554
No 100
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=51.19 E-value=3.1 Score=30.37 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 41 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 41 ~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
.-..+|+.|.++|.-++ .+. + ..+||+.| ++++..|+.+..+=|.|.+...
T Consensus 18 ~~~~Lt~~e~~vl~l~~-~g~---s---~~eIA~~l----~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 18 DVNQLTPRERDILKLIA-QGL---P---NKMIARRL----DITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp CGGGSCHHHHHHHHHHT-TTC---C---HHHHHHHH----TSCHHHHHHHHHHHHHHTTCSS
T ss_pred HHccCCHHHHHHHHHHH-cCC---C---HHHHHHHH----CcCHHHHHHHHHHHHHHHcCCC
Confidence 34468999999999954 432 2 23567777 7999999988776555555443
No 101
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=49.74 E-value=8.3 Score=30.20 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
.+++.|.++|...|..+. .. .+||+.| |+++..|+.|...=|.|.|+..
T Consensus 22 ~L~~~~r~vl~l~y~~g~--s~----~EIA~~l----giS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY--SL----AEIADEF----GVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC--CH----HHHHHHH----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--CH----HHHHHHH----CcCHHHHHHHHHHHHHHHHHHH
Confidence 478999999999877763 22 3466666 8999999999987777666544
No 102
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=49.67 E-value=4.8 Score=30.09 Aligned_cols=44 Identities=7% Similarity=0.090 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhh
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRS 98 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~ 98 (282)
.+|+.|.++|+-+++. . . ..+||+.| ++++..|+.+..+=|.|.
T Consensus 27 ~Lt~~e~~vl~l~~~g-~--s----~~eIA~~l----~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGLLSEG-L--T----NKQIADRM----FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHHHHTT-C--C----HHHHHHHH----TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcC-C--C----HHHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 5899999999997443 2 2 13567777 799999987655444333
No 103
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=47.95 E-value=4.8 Score=27.60 Aligned_cols=49 Identities=12% Similarity=0.032 Sum_probs=33.6
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 41 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 41 ~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
.-..+|+.|.++|..+ ..+. +. .+||+.| |+++..|+.+...=+.|.+.
T Consensus 8 ~~~~L~~~e~~il~~~-~~g~---s~---~eIA~~l----~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 8 SKPLLTKREREVFELL-VQDK---TT---KEIASEL----FISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCCHHHHHHHHHH-TTTC---CH---HHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHH-HcCC---CH---HHHHHHH----CCCHHHHHHHHHHHHHHHCC
Confidence 3456899999999995 3332 22 3566666 89999999887655544443
No 104
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=47.58 E-value=7.7 Score=30.18 Aligned_cols=24 Identities=25% Similarity=0.578 Sum_probs=20.3
Q ss_pred ceEEEEECCee---eeecCcccchhhc
Q 047211 219 GFITVFINGAP---TEIPRGPIDMKAL 242 (282)
Q Consensus 219 g~~tVfINgv~---~EV~~Gp~dvr~~ 242 (282)
.+++|++||.. ..||.|||.+...
T Consensus 27 A~V~v~qnG~~iy~~~VppGpF~I~dl 53 (90)
T 3fcg_A 27 ARVEVLRDGYTVSNELVPSGPFELANL 53 (90)
T ss_dssp EEEEEESSSCEEEEEEECSEEEEECCC
T ss_pred cEEEEEECCEEEEEeEeCCCCeEEcCC
Confidence 58999999986 5799999988755
No 105
>1isi_A Bone marrow stromal cell antigen 1; ADP ribosyl cyclase, NAD glycohydrolase, CNS, ethenonad, HYD; HET: NAG ENQ; 2.10A {Homo sapiens} SCOP: c.23.14.3 PDB: 1isg_A* 1isf_A* 1ish_A* 1isj_A* 1ism_A*
Probab=47.33 E-value=7.7 Score=35.77 Aligned_cols=36 Identities=33% Similarity=0.740 Sum_probs=31.4
Q ss_pred eceEEEEECCeeeeecCcccchhhccCC--------------ceEEEecCCCc
Q 047211 218 TGFITVFINGAPTEIPRGPIDMKALFGQ--------------DVVLVHSSGVP 256 (282)
Q Consensus 218 ~g~~tVfINgv~~EV~~Gp~dvr~~FG~--------------davLvhSsG~p 256 (282)
.|.++|++||- .|.|+|+...+||+ .+.|||.-|.|
T Consensus 152 ~G~V~VmLNGS---~~~~af~~~S~Fg~vElpnL~p~kV~~v~iwV~h~i~~~ 201 (265)
T 1isi_A 152 SGVIHVMLNGS---EPTGAYPIKGFFADYEIPNLQKEKITRIEIWVMHEIGGP 201 (265)
T ss_dssp CEEEEEEEETT---CTTCSCCSSSHHHHHTGGGCCGGGEEEEEEEEECCSSCC
T ss_pred CceEEEEEcCC---CCCCCcCCCCceeeeecccCCccceeEEEEEEEeCCCCC
Confidence 58999999997 67899999999998 67899986665
No 106
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=47.26 E-value=20 Score=24.94 Aligned_cols=55 Identities=22% Similarity=0.261 Sum_probs=39.0
Q ss_pred EEEECCeeeeecCcc--cchhhccC--CceEEEecCCCccccCCccccccccCCcceEEEee
Q 047211 222 TVFINGAPTEIPRGP--IDMKALFG--QDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVS 279 (282)
Q Consensus 222 tVfINgv~~EV~~Gp--~dvr~~FG--~davLvhSsG~pvptne~Gvt~~sLq~G~~Y~Lv~ 279 (282)
+|.|||.+.|+ .|. -||.+..| .+.+.|-=.|+.|+-++|.=+ .|+.|..--+++
T Consensus 1 ~i~vNg~~~~~-~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~--~L~dgD~v~i~~ 59 (64)
T 2cu3_A 1 MVWLNGEPRPL-EGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDR--PLRDGDVVEVVA 59 (64)
T ss_dssp CEEETTEEECC-TTCCHHHHHHHHTBCGGGEEEEETTEEEEGGGCCCC--CCCTTCEEEEEE
T ss_pred CEEECCEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECCccccCCc--CCCCCCEEEEEe
Confidence 47899999999 553 45555555 344556668888888888654 688888776665
No 107
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=46.67 E-value=10 Score=29.50 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHHHH
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQ 104 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~r~ 104 (282)
.+++.|.++|.-.|..+. .. .+||+.| |+++..|+.|...=|.|.|+....
T Consensus 25 ~L~~~~r~vl~l~~~~g~--s~----~EIA~~l----giS~~tV~~~l~ra~~kLr~~l~~ 75 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY--SL----SEIADTF----NVSRQAVYDNIRRTGDLVEDYEKK 75 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC--CH----HHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC--CH----HHHHHHH----CcCHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999877763 21 2455555 899999999888777777665433
No 108
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=46.62 E-value=4.5 Score=29.72 Aligned_cols=47 Identities=17% Similarity=0.005 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 43 WTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 43 t~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
..+|+.|.++|.-++ .+. .. .+||+.| ++++..|+.+..+=|.|.+.
T Consensus 28 ~~Lt~~e~~vl~l~~-~g~--s~----~eIA~~l----~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 28 EMLTEREMEILLLIA-KGY--SN----QEIASAS----HITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp GGCCSHHHHHHHHHH-TTC--CT----THHHHHH----TCCHHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHH-cCC--CH----HHHHHHH----CcCHHHHHHHHHHHHHHHCC
Confidence 368999999999864 332 22 2467777 79999999887665555543
No 109
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=45.77 E-value=11 Score=35.08 Aligned_cols=39 Identities=31% Similarity=0.673 Sum_probs=32.1
Q ss_pred eceEEEEECCeeeeecCcccchhhccCC------------ceEEEecCCCccccCC
Q 047211 218 TGFITVFINGAPTEIPRGPIDMKALFGQ------------DVVLVHSSGVPIPTNE 261 (282)
Q Consensus 218 ~g~~tVfINgv~~EV~~Gp~dvr~~FG~------------davLvhSsG~pvptne 261 (282)
.|.++|+.||-. .||||.+.+||+ .+.|||.-|.| +.+-
T Consensus 193 ~G~V~VmLNGS~----~~af~~~S~FgsvElpnL~~~k~l~iwVvhdi~~~-~~es 243 (278)
T 3p5s_A 193 CNTVRVVLNGSL----ENAFDSMSIFGRVEAPNLRPQVELEAWLVHDTGKP-PSDS 243 (278)
T ss_dssp CSEEEEEEETTS----SCSSCTTSHHHHTTGGGCCTTCEEEEEEEECTTSC-CSCC
T ss_pred CCeEEEEEcCCC----CCCcCCCCcceeeeccCCCCCceEEEEEEeCCCCC-ccCc
Confidence 589999999986 599999999993 48999997766 4443
No 110
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=45.60 E-value=16 Score=26.78 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=39.2
Q ss_pred eEEEEECCee---eeecCc--ccchhhccC--CceEEEecCCCccccCCccccccccCCcceEEEee
Q 047211 220 FITVFINGAP---TEIPRG--PIDMKALFG--QDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVS 279 (282)
Q Consensus 220 ~~tVfINgv~---~EV~~G--p~dvr~~FG--~davLvhSsG~pvptne~Gvt~~sLq~G~~Y~Lv~ 279 (282)
+++|.+||.. .|+|.| .-||-+.+| .+-|+|==.|.+||-|+ .|. |...-+|+
T Consensus 2 ~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~------~l~-GD~VeIv~ 61 (74)
T 2l32_A 2 NVTVEVVGEETSEVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQ------SVE-VDRVKVLR 61 (74)
T ss_dssp EEEEECSSSSEEEEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTS------SSC-CCCEEECS
T ss_pred EEEEEEeCccceeEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHH------CCC-CCEEEEEE
Confidence 4789999998 899887 478888888 33345656888999988 344 77666654
No 111
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=44.54 E-value=13 Score=29.89 Aligned_cols=52 Identities=8% Similarity=-0.003 Sum_probs=35.3
Q ss_pred CCCCCCCCCHHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHhcC--CCCCCceeecccc
Q 047211 38 PVRSRWTPKPEQILILESIF-NSGMVNPPKDETVRIRKLLEKFG--SVGDANVFYWFQN 93 (282)
Q Consensus 38 ~kR~Rt~fT~eQL~~LE~~F-~~~~~yP~~~eR~~Ia~eLa~~~--~Lse~qVkvWFQN 93 (282)
++++|.++|-+|...|-..+ +.+ |... ..+|++-..+.+ +++...|..|..|
T Consensus 5 ~~~~R~~lT~~qK~~i~~~~~~~~---~~~~-q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 5 GKIKRRAITEHEKRALRHYFFQLQ---NRSG-QQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCCSSSCCCSHHHHHHHHHHHSSS---SCCC-HHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCCcCccCCHHHHHHHHHHHHHhC---CCCC-HHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 36789999999999999999 554 3322 124555222244 6888889888744
No 112
>3lag_A Uncharacterized protein RPA4178; functionally unknown protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.15A {Rhodopseudomonas palustris}
Probab=43.26 E-value=35 Score=25.48 Aligned_cols=59 Identities=17% Similarity=0.132 Sum_probs=45.0
Q ss_pred ceEEEEECCeeeee------cCcccchhhccCCceEEEecCCCccccCCccc-cccccCCcceEEE
Q 047211 219 GFITVFINGAPTEI------PRGPIDMKALFGQDVVLVHSSGVPIPTNEFGF-LMQSLQHGESYFL 277 (282)
Q Consensus 219 g~~tVfINgv~~EV------~~Gp~dvr~~FG~davLvhSsG~pvptne~Gv-t~~sLq~G~~Y~L 277 (282)
+..+|.|++--+.| |-+-+-+.....+..+.+=.+|...-+++-|- ..-.|..|++||.
T Consensus 6 a~~~V~ien~~~rV~r~~i~PG~~~~~H~H~~~~e~~~v~~G~~~v~~~d~~~~~~~l~~G~~~~i 71 (98)
T 3lag_A 6 AKSEIQIDNDEVRVTEWRLPPGSATGHHTHGMDYVVVPMADGEMTIVAPDGTRSLAQLKTGRSYAR 71 (98)
T ss_dssp CEEEEEEESSSEEEEEEEECTTEECCSEECCSCEEEEESSCBC-CEECTTSCEECCCBCTTCCEEE
T ss_pred ceeeEEEcCCeEEEEEEEECCCCccCcEECCCcEEEEEEeccEEEEEeCCCceEEEEecCCcEEEE
Confidence 46788888876666 44558888888888888888899888877665 4567899999986
No 113
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=40.99 E-value=3.8 Score=28.69 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 45 PKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 45 fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
+++.|.++|.-+ ..+. . . .+||+.| ++++..|+.+..+=+.|.+.
T Consensus 17 L~~~e~~vl~l~-~~g~--s-~---~eIA~~l----~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 17 LSERERQVLSAV-VAGL--P-N---KSIAYDL----DISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HCHHHHHHHHHH-TTTC--C-H---HHHHHHT----TSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHH-HcCC--C-H---HHHHHHH----CcCHHHHHHHHHHHHHHHcC
Confidence 678999999885 3432 2 1 2455555 89999999877655555554
No 114
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=40.44 E-value=34 Score=28.97 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCceeecccccc
Q 047211 64 PPKDETVRIRKLLEKFGSVGDANVFYWFQNRR 95 (282)
Q Consensus 64 P~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRR 95 (282)
.+.+|..+|++.|. +-....|..||=|||
T Consensus 59 Lt~~ei~~l~~~i~---~~~~~~ip~w~lNr~ 87 (152)
T 3iz6_M 59 LSAEEMDRLMAVVH---NPRQFKVPDWFLNRK 87 (152)
T ss_dssp SCHHHHHHHHHHHH---SCSSCCCCCCSCSCC
T ss_pred CCHHHHHHHHHHHH---hhcccCcchhhhhhh
Confidence 55556666666664 112234678999998
No 115
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=39.33 E-value=11 Score=26.36 Aligned_cols=46 Identities=4% Similarity=-0.012 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhH
Q 047211 44 TPKPEQILILESIFN----SGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSR 99 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~----~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~K 99 (282)
.+++.|.++|+..|. .+. +. .+||+.| |+++..|+.|...=+.|.|
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~---s~---~eIA~~l----~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREH---TL---EEVGAYF----GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CH---HHHHHHH----TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCC---CH---HHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 478999999999986 442 22 3566666 8999999987655554444
No 116
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=38.90 E-value=14 Score=30.17 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHH
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRR 101 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk 101 (282)
.+++.|..+|+..|..+. . . +++++.+|+++..|+.+...=|.|.|+.
T Consensus 187 ~L~~~~r~vl~l~~~~g~--s-~-------~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEEL--P-A-------KEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp TSCHHHHHHHHHHHTSCC--C-H-------HHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCC--C-H-------HHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 467778888888776653 2 1 2444445899999998877666666554
No 117
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=38.53 E-value=18 Score=26.47 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=38.2
Q ss_pred EEEEECCeeeeecCc--ccchhhccC--CceEEEecCCCccccCCccccccccCCcceEEEee
Q 047211 221 ITVFINGAPTEIPRG--PIDMKALFG--QDVVLVHSSGVPIPTNEFGFLMQSLQHGESYFLVS 279 (282)
Q Consensus 221 ~tVfINgv~~EV~~G--p~dvr~~FG--~davLvhSsG~pvptne~Gvt~~sLq~G~~Y~Lv~ 279 (282)
|+|.|||.++|+ .| --||-+.+| .+.|.|==.|++||-++|.=+ .|+-|..--+|+
T Consensus 1 M~I~vNG~~~e~-~~~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~~~~--~L~dGD~veIv~ 60 (73)
T 2kl0_A 1 MLVTINGEQREV-QSASVAALMTELDCTGGHFAVALNYDVVPRGKWDET--PVTAGDEIEILT 60 (73)
T ss_dssp CCEEETTEEECC-CCSBHHHHHHHTTCCSSSCEEEESSSEECHHHHTTC--BCCTTCEEEEEC
T ss_pred CEEEECCEEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECChHHcCcc--cCCCCCEEEEEc
Confidence 568999999999 44 244455565 333445557899999988654 577777666654
No 118
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=38.50 E-value=30 Score=25.84 Aligned_cols=50 Identities=8% Similarity=-0.088 Sum_probs=33.9
Q ss_pred CCCCCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHhcCCCCCCceeecc
Q 047211 40 RSRWTPKPEQILILESIFNSG----MVNPPKDETVRIRKLLEKFGSVGDANVFYWF 91 (282)
Q Consensus 40 R~Rt~fT~eQL~~LE~~F~~~----~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWF 91 (282)
+....++++|++.|...|..- .-+.+.+|-.++-+.|+ ..+++..|+.+|
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg--~~~~~~ei~~l~ 78 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLG--YMPNEVELEVII 78 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHT--CCCCTTTHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhC--CCCCHHHHHHHH
Confidence 445689999999999999862 22477766555555543 246777777665
No 119
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=37.30 E-value=13 Score=29.55 Aligned_cols=48 Identities=8% Similarity=-0.045 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 45 PKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 45 fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
+++.|.++|.-.|-.+. + . .+||+. +|+++..|+.+...=|.|.|+..
T Consensus 141 L~~~~r~vl~l~~~~g~--s-~---~EIA~~----lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELDGL--S-Y---EEIAAI----MDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTTCC--C-H---HHHHHH----TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcCC--C-H---HHHHHH----HCCCHHHHHHHHHHHHHHHHHHH
Confidence 56667777777665542 2 1 234455 48999999988776666665543
No 120
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=35.96 E-value=12 Score=25.79 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHH----hcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhH
Q 047211 44 TPKPEQILILESIF----NSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSR 99 (282)
Q Consensus 44 ~fT~eQL~~LE~~F----~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~K 99 (282)
.+++.|.++|...| ..+. +- .+||+.| |+++..|+.+...=+.|.|
T Consensus 5 ~L~~~er~il~l~~~l~~~~g~---s~---~eIA~~l----gis~~tV~~~~~ra~~kLr 54 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTDY---TL---EEVGKQF----DVTRERIRQIEAKALRKLR 54 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSCC---CH---HHHHHHH----TCCHHHHHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHccCCCCCC---CH---HHHHHHH----CcCHHHHHHHHHHHHHHHH
Confidence 47899999999999 3432 22 3466666 8999999977554444443
No 121
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=35.52 E-value=9.2 Score=25.12 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=27.9
Q ss_pred CCCC--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 047211 43 WTPK--PEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQ 92 (282)
Q Consensus 43 t~fT--~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQ 92 (282)
+.++ +++.+.+...+..+. + ..+||+.| |++...|..|..
T Consensus 12 ~~l~~~~~~~~~i~~l~~~g~---s---~~eIA~~l----gis~~TV~~~l~ 53 (55)
T 2x48_A 12 YYVESEDDLVSVAHELAKMGY---T---VQQIANAL----GVSERKVRRYLE 53 (55)
T ss_dssp EEECSHHHHHHHHHHHHHTTC---C---HHHHHHHH----TSCHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHcCC---C---HHHHHHHH----CcCHHHHHHHHH
Confidence 3566 788777777776653 2 23466666 899999998874
No 122
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=33.93 E-value=15 Score=26.55 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=26.1
Q ss_pred CCCCHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCCCCCCcee
Q 047211 43 WTPKPEQILILESIFNSGM----VNPPKDETVRIRKLLEKFGSVGDANVF 88 (282)
Q Consensus 43 t~fT~eQL~~LE~~F~~~~----~yP~~~eR~~Ia~eLa~~~~Lse~qVk 88 (282)
|.+|++|+..|++.|..-- -+.+.+ +++.-|.+. ++++..+.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~---el~~~l~~~-g~~~~~~~ 46 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGS---AAKEFFTKS-KLPILELS 46 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHH---HHHHHHHHH-SSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHH---HHHHHHHHc-CCCHHHHH
Confidence 7899999999999998621 124444 444444332 46544443
No 123
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=32.85 E-value=19 Score=26.37 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=27.0
Q ss_pred CCCCCHHHHHHHHHHHh-c-CCCCCCHHHHHHHHHHHHhcCCCCCCceeeccc
Q 047211 42 RWTPKPEQILILESIFN-S-GMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQ 92 (282)
Q Consensus 42 Rt~fT~eQL~~LE~~F~-~-~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQ 92 (282)
|..||+++....-..+. . +. . ..+|++++ ||+...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~--s----~~~ia~~~----gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA--S----LQQIANDL----GINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS--C----HHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--h----HHHHHHHH----CcCHHHHHHHHH
Confidence 45788998866555553 3 32 1 23455555 899999999974
No 124
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.49 E-value=44 Score=26.76 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=35.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCce
Q 047211 33 ERSTEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANV 87 (282)
Q Consensus 33 ~~~~~~kR~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qV 87 (282)
.....+.+.+...|.|||++=+.++..+ .|+.++. | +.|..+.|+++..+
T Consensus 8 ~~~~~~~~~~~~aTaeQ~rLAq~i~~~~--d~d~eek--V-k~L~EmtG~seeeA 57 (104)
T 1wj7_A 8 NQNQTQHKQRPQATAEQIRLAQMISDHN--DADFEEK--V-KQLIDITGKNQDEC 57 (104)
T ss_dssp SCCCCTTCCSSSSSHHHHHHHHHHHHSC--CHHHHHH--H-HHHHHHTCCCHHHH
T ss_pred CCccCccccccccCHHHHHHHHHHhcCC--cccHHHH--H-HHHHHhhCCCHHHH
Confidence 3444566778899999999999998775 2544433 3 66666677877654
No 125
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=32.47 E-value=16 Score=30.99 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=34.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhH
Q 047211 41 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSR 99 (282)
Q Consensus 41 ~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~K 99 (282)
+...+|+.|+++|.-++ .+. .. ++|++.| +++++.|+.+..|=|.|..
T Consensus 172 ~~~~Lt~~e~~vl~~~~-~g~--s~----~eIa~~l----~is~~tV~~~~~~~~~kl~ 219 (236)
T 2q0o_A 172 PKQMLSPREMLCLVWAS-KGK--TA----SVTANLT----GINARTVQHYLDKARAKLD 219 (236)
T ss_dssp GGGSCCHHHHHHHHHHH-TTC--CH----HHHHHHH----CCCHHHHHHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHH-cCC--CH----HHHHHHH----CcCHHHHHHHHHHHHHHhC
Confidence 35679999999998865 442 21 3567777 8999999988766555543
No 126
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.46 E-value=9.5 Score=25.37 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 48 EQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 48 eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
.|.++|+-+ ..+. .. .+||+.| ++++..|+.+..+=+.|.+-
T Consensus 2 re~~vl~l~-~~g~--s~----~eIA~~l----~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 2 RERQVLKLI-DEGY--TN----HGISEKL----HISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp HHHHHHHHH-HTSC--CS----HHHHHHT----CSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHH-HcCC--CH----HHHHHHh----CCCHHHHHHHHHHHHHHHCC
Confidence 467788774 4442 32 2456665 89999999877655544443
No 127
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=31.87 E-value=13 Score=27.84 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=29.5
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 047211 40 RSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQN 93 (282)
Q Consensus 40 R~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQN 93 (282)
.....+|+.|+++|.-++ .+. . ..+||++| +|+++.|+....+
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-~G~--s----~~eIA~~L----~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-KGF--T----NQEIADAL----HLSKRSIEYSLTS 67 (90)
T ss_dssp ----CCCHHHHHHHHHHH-TTC--C----HHHHHHHH----TCCHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHH-cCC--C----HHHHHHHH----CcCHHHHHHHHHH
Confidence 456689999999999888 442 2 24567777 7999999865544
No 128
>3fip_A Outer membrane usher protein PAPC; beta barrel, protein translocase, cell membrane, cell outer fimbrium, transmembrane, transport; 3.15A {Escherichia coli} PDB: 2vqi_A*
Probab=31.65 E-value=22 Score=34.72 Aligned_cols=39 Identities=26% Similarity=0.494 Sum_probs=28.4
Q ss_pred eceEEEEECCee---eeecCcccchhhcc----CC-ceEEEecCCCc
Q 047211 218 TGFITVFINGAP---TEIPRGPIDMKALF----GQ-DVVLVHSSGVP 256 (282)
Q Consensus 218 ~g~~tVfINgv~---~EV~~Gp~dvr~~F----G~-davLvhSsG~p 256 (282)
+++++|++||.. +.||.|||.+.... || +|++....|..
T Consensus 128 ~A~V~v~qnG~~iy~t~VppGpF~i~dl~~~~~Gdl~V~v~EadG~~ 174 (493)
T 3fip_A 128 NARVVVSQQGRVLYDSMVPAGPFSIQDLDSSVRGRLDVEVIEQNGRK 174 (493)
T ss_dssp SCEEEEEETTEEEEEEECCSEEECCCCSCSCCCSEEEEEEECTTSCB
T ss_pred CcEEEEEECCEEEEEEEeCCCCeEecCCCCCCceeEEEEEEECCCcE
Confidence 468999999986 57999999887654 43 34445557764
No 129
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=31.13 E-value=8.3 Score=30.54 Aligned_cols=26 Identities=12% Similarity=-0.052 Sum_probs=19.6
Q ss_pred HHHhcCCCCCCceeecccccchhhHH
Q 047211 75 LLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 75 eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
++++.+|+++..|+.|...=|.|.|+
T Consensus 156 eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 156 ELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 56777799999998887766666554
No 130
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=30.27 E-value=27 Score=28.16 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=18.6
Q ss_pred CCCCCCCHHHHHHHHHHHhcC
Q 047211 40 RSRWTPKPEQILILESIFNSG 60 (282)
Q Consensus 40 R~Rt~fT~eQL~~LE~~F~~~ 60 (282)
+..|..|++++..++++|..-
T Consensus 22 ~~~W~it~ee~~~y~~iF~~l 42 (121)
T 3fia_A 22 LDTWAITVEERAKHDQQFHSL 42 (121)
T ss_dssp TTTSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHh
Confidence 358999999999999999874
No 131
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=29.54 E-value=14 Score=26.87 Aligned_cols=47 Identities=11% Similarity=0.132 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHh----cCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHH
Q 047211 44 TPKPEQILILESIFN----SGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRR 100 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~----~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KR 100 (282)
.+++.|.++|...|. .+. +. .+||+.| |+++..|+.|...=+.|.|+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~---s~---~EIA~~l----gis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK---TL---EEVGQYF----NVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CH---HHHHHHH----TCCHHHHHHHHHHHHHHHBT
T ss_pred hCCHHHHHHHHHHHccCCCCCC---CH---HHHHHHH----CCCHHHHHHHHHHHHHHHHH
Confidence 468899999999986 432 22 3566666 89999999886555555443
No 132
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=28.73 E-value=22 Score=22.14 Aligned_cols=15 Identities=60% Similarity=0.720 Sum_probs=12.3
Q ss_pred ccchhhHHHHHHHHH
Q 047211 93 NRRSRSRRRQRQLQA 107 (282)
Q Consensus 93 NRRAK~KRk~r~~q~ 107 (282)
|||-|||+++++...
T Consensus 8 nRRRRWR~Rq~qi~~ 22 (26)
T 1etf_B 8 NRRRRWRERQRAAAA 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 889999988888754
No 133
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=28.61 E-value=32 Score=27.04 Aligned_cols=30 Identities=13% Similarity=-0.011 Sum_probs=20.9
Q ss_pred CCCCCCCHHHHHHHHHHHhc----CCCCCCHHHH
Q 047211 40 RSRWTPKPEQILILESIFNS----GMVNPPKDET 69 (282)
Q Consensus 40 R~Rt~fT~eQL~~LE~~F~~----~~~yP~~~eR 69 (282)
.+|..+|++||+.|..+|.. +.-+.+..+-
T Consensus 5 ~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El 38 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDL 38 (153)
T ss_dssp --CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHH
Confidence 35678999999999999975 1123666543
No 134
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=28.24 E-value=40 Score=28.33 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCceeecccccc
Q 047211 64 PPKDETVRIRKLLEKFGSVGDANVFYWFQNRR 95 (282)
Q Consensus 64 P~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRR 95 (282)
.+.+|..+|++.|. +-....|-.||=|||
T Consensus 61 Lt~~ei~~l~~~i~---~~~~~~iP~w~lNR~ 89 (146)
T 3u5c_S 61 LTQEELERIVQIMQ---NPTHYKIPAWFLNRQ 89 (146)
T ss_dssp CCHHHHHHHHHHHT---CTTTTTCCSTTCTBC
T ss_pred CCHHHHHHHHHHHH---hhcccCccHHHhhhh
Confidence 56666666666663 112234667999996
No 135
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=27.55 E-value=49 Score=26.97 Aligned_cols=39 Identities=15% Similarity=0.032 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCC-Ccee
Q 047211 45 PKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGD-ANVF 88 (282)
Q Consensus 45 fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse-~qVk 88 (282)
..+||.+.|+..+++ ||... .+|+..|-+.+||++ .+|+
T Consensus 73 V~~E~KeaL~ellEE---~PGaa--lqia~~Li~~lGls~~~~lk 112 (114)
T 3fgx_A 73 IVPEQEEELRQAAEE---FPGLT--FNTASRLMEIVGASAATSLK 112 (114)
T ss_dssp BCGGGHHHHHHHHHH---STTHH--HHHHHHHHHHHTCCCCCCCC
T ss_pred cCcccHHHHHHHHHH---CccHH--HHHHHHHHHHhCCcchhhhh
Confidence 468899999999998 58876 679999999999987 4554
No 136
>1r12_A ADP-ribosyl cyclase; X-RAY crystallography, cyclic ADP- ribose, naadp, Ca2+ signalling, hydrolase; 1.70A {Aplysia californica} SCOP: c.23.14.3 PDB: 1lbe_A 1r15_A 1r16_A 3i9j_A* 3i9o_A* 3zwn_A* 3zwm_A* 3zwp_A* 3zwv_A* 3zww_A* 3zwo_A* 1r0s_A 3i9l_A* 3i9k_A*
Probab=27.36 E-value=33 Score=31.45 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=32.4
Q ss_pred eceEEEEECCeeeeecCc-ccchhhccCC-------------ceEEEecCCCccccCCc
Q 047211 218 TGFITVFINGAPTEIPRG-PIDMKALFGQ-------------DVVLVHSSGVPIPTNEF 262 (282)
Q Consensus 218 ~g~~tVfINgv~~EV~~G-p~dvr~~FG~-------------davLvhSsG~pvptne~ 262 (282)
.|.++|+.||- .|.| +|+...+||+ .+.|||.-|.| +.+-.
T Consensus 152 ~G~V~VmLNGS---~~~g~af~~~S~Fg~vElp~L~~kV~~v~i~V~h~~~~~-~~esC 206 (258)
T 1r12_A 152 EGEVTYMVDGS---NPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVLHRLGEK-IIEKC 206 (258)
T ss_dssp CEEEEEEEESS---CSSSCSSCTTSHHHHTTGGGCCTTEEEEEEEEECCTTSC-CCCCT
T ss_pred CCcEEEEEcCC---CCCCcccCCCCeeEEEeccccccceeEEEEEEEeCCCCC-ccCcc
Confidence 58999999995 4778 7999999998 57899987776 44433
No 137
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=26.84 E-value=22 Score=24.82 Aligned_cols=42 Identities=14% Similarity=0.043 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchh
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSR 97 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK 97 (282)
.++++.|+.|-....-.+ ++|++.+|++...|..|=.+++.-
T Consensus 10 ~~~g~~lr~~R~~~gltq------------~elA~~~gvs~~tis~~E~G~~~p 51 (73)
T 3fmy_A 10 TVAPEFIVKVRKKLSLTQ------------KEASEIFGGGVNAFSRYEKGNAXP 51 (73)
T ss_dssp CCCHHHHHHHHHHTTCCH------------HHHHHHHCSCTTHHHHHHTTSSCC
T ss_pred CCCHHHHHHHHHHcCCCH------------HHHHHHhCcCHHHHHHHHcCCCCC
Confidence 688999998887654432 355555589999999999988743
No 138
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=25.74 E-value=48 Score=24.17 Aligned_cols=46 Identities=15% Similarity=-0.030 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-------CCCCceeecccc
Q 047211 43 WTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGS-------VGDANVFYWFQN 93 (282)
Q Consensus 43 t~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~-------Lse~qVkvWFQN 93 (282)
..+++++.+.|++....++. .+. .+|+.+|.+. | ++...|..|...
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~-~s~---~~i~~~l~~~-g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPG-MFS---WEIREKLIRE-GVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTT-CCH---HHHHHHHHHT-SSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHHhCcc-hHH---HHHHHHHHHc-CCccccCCcCHHHHHHHHHh
Confidence 35778888888888876542 343 3577778655 4 466778877753
No 139
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=25.13 E-value=21 Score=27.57 Aligned_cols=23 Identities=4% Similarity=-0.142 Sum_probs=18.8
Q ss_pred HHHhcCCCCCCceeecccccchh
Q 047211 75 LLEKFGSVGDANVFYWFQNRRSR 97 (282)
Q Consensus 75 eLa~~~~Lse~qVkvWFQNRRAK 97 (282)
+||+.+|++...|..|=.+++.-
T Consensus 89 ~la~~~g~s~~~i~~~E~g~~~p 111 (133)
T 3o9x_A 89 EASEIFGGGVNAFSRYEKGNAQP 111 (133)
T ss_dssp HHHHHHCSCTTHHHHHHHTSSCC
T ss_pred HHHHHHCCCHHHHHHHHCCCCCC
Confidence 55667799999999999987753
No 140
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=25.12 E-value=17 Score=31.43 Aligned_cols=49 Identities=18% Similarity=0.056 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhhHHHH
Q 047211 43 WTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQ 102 (282)
Q Consensus 43 t~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~KRk~ 102 (282)
-.+++.|.++|.-.+ .+. .. .+||+.| |+++..|++...+=|.|.|..-
T Consensus 196 ~~L~~~erevl~L~~-~G~--s~----~EIA~~L----~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIR-KGL--SS----KEIAATL----YISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHH-TTC--CH----HHHHHHH----TCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHH-cCC--CH----HHHHHHH----CcCHHHHHHHHHHHHHHHcCCC
Confidence 478999999999985 442 22 3567777 8999999988776666665543
No 141
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=24.90 E-value=38 Score=25.49 Aligned_cols=41 Identities=5% Similarity=0.017 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 047211 43 WTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQN 93 (282)
Q Consensus 43 t~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQN 93 (282)
..+|.++...+...+..+. + ..+||+.| |++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G~---s---~~~ia~~l----gis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV---S---LHEMSRKI----SRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC---C---HHHHHHHH----TCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcCC---C---HHHHHHHH----CcCHHHHHHHHHc
Confidence 4678999888888887663 2 23566666 7999999999864
No 142
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=24.56 E-value=69 Score=24.79 Aligned_cols=50 Identities=8% Similarity=-0.055 Sum_probs=33.3
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC----C--CCCCceeecccccc
Q 047211 42 RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFG----S--VGDANVFYWFQNRR 95 (282)
Q Consensus 42 Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~----~--Lse~qVkvWFQNRR 95 (282)
+..+++++.+.|+.....++. .+. .+|+.+|.+.. + ++...|..|...+.
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~-~s~---~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPT-MFA---WEIRDRLLAERVCDNDTVPSVSSINRIIRTKV 143 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTT-CCH---HHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC-
T ss_pred CCCCCHHHHHHHHHHHHhCcc-hhH---HHHHHHHHHhcccccCCCcCHHHHHHHHHHHh
Confidence 346789999999999887542 343 35677775442 3 67777888876543
No 143
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=24.55 E-value=16 Score=29.70 Aligned_cols=45 Identities=7% Similarity=0.011 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhh
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRS 98 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~ 98 (282)
.+++.|.++|.-.|..+. +. .+||+.| |+++..|+.+...=|.|.
T Consensus 198 ~L~~~~r~vl~l~~~~g~--s~----~EIA~~l----gis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 198 ELDERERLIVYLRYYKDQ--TQ----SEVASRL----GISQVQMSRLEKKILQHI 242 (243)
T ss_dssp -------------------------------------------------------
T ss_pred hCCHHHHHHHHHHHhcCC--CH----HHHHHHH----CcCHHHHHHHHHHHHHHc
Confidence 467777888887666552 21 2345555 899999999887655554
No 144
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=24.40 E-value=23 Score=29.91 Aligned_cols=47 Identities=17% Similarity=0.051 Sum_probs=33.2
Q ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccccchhh
Q 047211 41 SRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRS 98 (282)
Q Consensus 41 ~Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQNRRAK~ 98 (282)
+...+|+.|+++|.-++ .+. . -.+||+.| ++++..|+...+|=|.|.
T Consensus 170 ~~~~Lt~~e~~vl~~~~-~g~--s----~~eIa~~l----~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 170 DAAWLDPKEATYLRWIA-VGK--T----MEEIADVE----GVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCCCHHHHHHHHHHT-TTC--C----HHHHHHHH----TCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH-cCC--C----HHHHHHHH----CcCHHHHHHHHHHHHHHh
Confidence 45679999999998864 443 2 13567777 799999998766544443
No 145
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=23.68 E-value=42 Score=26.50 Aligned_cols=47 Identities=11% Similarity=-0.027 Sum_probs=30.2
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC------CCCCCceeeccc
Q 047211 42 RWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFG------SVGDANVFYWFQ 92 (282)
Q Consensus 42 Rt~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~------~Lse~qVkvWFQ 92 (282)
+..+++++.+.|......++. .+. .+|+.+|.+.. .++...|..|..
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~-~s~---~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPT-MFA---WEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSS-SCH---HHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCcc-chH---HHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 346788888888888877532 343 35677775443 356666766654
No 146
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.31 E-value=24 Score=29.77 Aligned_cols=9 Identities=33% Similarity=0.575 Sum_probs=7.7
Q ss_pred eeecccccc
Q 047211 87 VFYWFQNRR 95 (282)
Q Consensus 87 VkvWFQNRR 95 (282)
|-.||-|||
T Consensus 74 iP~w~lNr~ 82 (148)
T 3j20_O 74 IPRWAVNRP 82 (148)
T ss_dssp CCTTTSSEE
T ss_pred CChhhhccc
Confidence 557999999
No 147
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=21.67 E-value=78 Score=24.88 Aligned_cols=40 Identities=13% Similarity=0.060 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCCCCCceeecccc
Q 047211 44 TPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQN 93 (282)
Q Consensus 44 ~fT~eQL~~LE~~F~~~~~yP~~~eR~~Ia~eLa~~~~Lse~qVkvWFQN 93 (282)
.++.++...+-..+..+. + ..+||++| +++...|..|...
T Consensus 25 ~~s~e~r~~ii~l~~~G~---s---~~~IA~~l----gis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAHQGV---R---PCDISRQL----RVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHHHTC---C---HHHHHHHH----TCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcCC---C---HHHHHHHH----CcCHHHHHHHHHH
Confidence 688888887777777653 2 23466666 7999999999864
No 148
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=20.95 E-value=25 Score=25.56 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHHhcCCCCCCcee
Q 047211 43 WTPKPEQILILESIFNSG----MVNPPKDETVRIRKLLEKFGSVGDANVF 88 (282)
Q Consensus 43 t~fT~eQL~~LE~~F~~~----~~yP~~~eR~~Ia~eLa~~~~Lse~qVk 88 (282)
|.+|++|+..|+++|..- .-+.+.+ +++.-|.+ +++++..|.
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~---el~~~l~~-~g~~~~~~~ 47 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGL---EVREIFLK-TGLPSTLLA 47 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHH---HHHHHHHT-TTCCHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHH---HHHHHHHH-cCCCHHHHH
Confidence 778999999999999751 1124544 45555543 345544443
Done!