BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047212
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
          Length = 176

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 2   CFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWR 61
           C  E+V   + +K  ++  TV+P+F+ + P+ VR Q    AE F KH +R   EKV KWR
Sbjct: 80  CLDELVTIMDFEKKGSI--TVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWR 137

Query: 62  AALTRAANLSG 72
            ALT  A LSG
Sbjct: 138 QALTNFAQLSG 148


>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
 pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
           Resistance Protein L6
          Length = 204

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 5/83 (6%)

Query: 3   FGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRA 62
             EIV+    ++  + R+ +LP+F+ + PSDVR+Q   + +AF KH  +F  + ++ W+ 
Sbjct: 111 LAEIVR----RQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKD 166

Query: 63  ALTRAANLSGWALHEAPK-GLIA 84
           AL +  +L GW + +  K G IA
Sbjct: 167 ALKKVGDLKGWHIGKNDKQGAIA 189


>pdb|3IX3|A Chain A, Lasr-Oc12 Hsl Complex
 pdb|3IX3|B Chain B, Lasr-Oc12 Hsl Complex
 pdb|3IX4|A Chain A, Lasr-Tp1 Complex
 pdb|3IX4|B Chain B, Lasr-Tp1 Complex
 pdb|3IX4|C Chain C, Lasr-Tp1 Complex
 pdb|3IX4|D Chain D, Lasr-Tp1 Complex
 pdb|3IX4|E Chain E, Lasr-Tp1 Complex
 pdb|3IX4|F Chain F, Lasr-Tp1 Complex
 pdb|3IX4|G Chain G, Lasr-Tp1 Complex
 pdb|3IX4|H Chain H, Lasr-Tp1 Complex
 pdb|3IX8|A Chain A, Lasr-Tp3 Complex
 pdb|3IX8|B Chain B, Lasr-Tp3 Complex
 pdb|3IX8|C Chain C, Lasr-Tp3 Complex
 pdb|3IX8|D Chain D, Lasr-Tp3 Complex
 pdb|3JPU|A Chain A, Lasr-Tp4 Complex
 pdb|3JPU|B Chain B, Lasr-Tp4 Complex
 pdb|3JPU|C Chain C, Lasr-Tp4 Complex
 pdb|3JPU|D Chain D, Lasr-Tp4 Complex
 pdb|3JPU|E Chain E, Lasr-Tp4 Complex
          Length = 173

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 20  QTVLPVFFDISPSDVRNQNENFAEA 44
           Q+VLP+F++ S    R Q+E F EA
Sbjct: 81  QSVLPIFWEPSIYQTRKQHEFFEEA 105


>pdb|3D2U|A Chain A, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
           Bound To A Host Inhibitory Receptor
 pdb|3D2U|E Chain E, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
           Bound To A Host Inhibitory Receptor
          Length = 281

 Score = 27.7 bits (60), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 10  GNCKKHNNVRQTVLP-VFFDISPSDVRNQNENFAEAF 45
           GNC + + +     P V   +    VRNQN+N AEAF
Sbjct: 172 GNCTQWSVIYSGFQPPVTHPVVKGGVRNQNDNRAEAF 208


>pdb|2UV0|E Chain E, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain
           Bound To Its Autoinducer
 pdb|2UV0|F Chain F, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain
           Bound To Its Autoinducer
 pdb|2UV0|G Chain G, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain
           Bound To Its Autoinducer
 pdb|2UV0|H Chain H, Structure Of The P. Aeruginosa Lasr Ligand-Binding Domain
           Bound To Its Autoinducer
          Length = 175

 Score = 27.3 bits (59), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 20  QTVLPVFFDISPSDVRNQNENFAEA 44
           Q+VLP+F++ S    R Q+E F EA
Sbjct: 83  QSVLPIFWEPSIYQTRKQHEFFEEA 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,712,671
Number of Sequences: 62578
Number of extensions: 88270
Number of successful extensions: 217
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 5
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)