Query 047212
Match_columns 93
No_of_seqs 122 out of 1000
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 08:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047212.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047212hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.4E-32 3E-37 230.6 7.0 90 1-92 82-171 (1153)
2 PLN03194 putative disease resi 99.9 1.1E-26 2.4E-31 163.2 5.9 75 1-92 97-173 (187)
3 PF01582 TIR: TIR domain; Int 99.0 6.3E-11 1.4E-15 78.7 0.4 65 1-65 71-140 (141)
4 smart00255 TIR Toll - interleu 98.6 1E-07 2.2E-12 62.2 5.2 68 1-69 71-139 (140)
5 KOG2792 Putative cytochrome C 83.0 0.93 2E-05 34.0 2.1 31 2-32 155-187 (280)
6 PF13676 TIR_2: TIR domain; PD 64.9 5.2 0.00011 24.2 1.8 22 1-28 66-87 (102)
7 PHA03073 late transcription fa 61.8 1.9 4.1E-05 29.6 -0.7 42 2-46 82-135 (150)
8 PF12128 DUF3584: Protein of u 57.0 2.4 5.3E-05 37.3 -1.0 29 20-49 34-62 (1201)
9 PHA00407 phage lambda Rz1-like 51.6 12 0.00025 23.2 1.6 24 54-77 25-53 (84)
10 COG3383 Uncharacterized anaero 45.2 6 0.00013 34.1 -0.4 55 38-92 305-381 (978)
11 COG2975 Uncharacterized protei 40.4 23 0.0005 20.8 1.7 23 67-89 34-56 (64)
12 cd01040 globin Globins are hem 37.0 38 0.00081 21.1 2.5 18 52-69 121-138 (140)
13 cd01241 PH_Akt Akt pleckstrin 36.1 34 0.00074 21.2 2.1 15 54-68 88-102 (102)
14 PRK05225 ketol-acid reductoiso 34.2 19 0.00042 29.2 0.9 61 2-68 253-337 (487)
15 TIGR02453 conserved hypothetic 33.8 46 0.00099 23.9 2.7 54 21-75 94-151 (217)
16 PF10579 Rapsyn_N: Rapsyn N-te 33.3 26 0.00056 21.7 1.2 19 54-72 23-41 (80)
17 KOG1076 Translation initiation 33.2 79 0.0017 27.3 4.3 47 3-72 270-324 (843)
18 PRK02797 4-alpha-L-fucosyltran 30.4 1.2E+02 0.0026 23.4 4.6 16 54-69 304-319 (322)
19 COG0059 IlvC Ketol-acid reduct 30.3 41 0.00089 26.1 2.1 62 2-64 229-310 (338)
20 cd01251 PH_centaurin_alpha Cen 28.4 64 0.0014 20.0 2.4 17 54-70 86-102 (103)
21 cd01219 PH_FGD FGD (faciogenit 26.8 69 0.0015 19.7 2.4 16 54-69 85-100 (101)
22 cd03063 TRX_Fd_FDH_beta TRX-li 26.3 33 0.00072 21.5 0.8 12 25-36 60-72 (92)
23 PF00169 PH: PH domain; Inter 26.2 77 0.0017 18.0 2.4 15 54-68 89-103 (104)
24 PRK13289 bifunctional nitric o 25.4 66 0.0014 24.3 2.5 43 27-69 88-131 (399)
25 KOG4302 Microtubule-associated 25.2 1.6E+02 0.0035 25.0 4.8 60 17-76 140-202 (660)
26 PF15043 CNRIP1: CB1 cannabino 24.6 33 0.00072 23.9 0.6 7 24-30 22-28 (161)
27 PF09838 DUF2065: Uncharacteri 24.5 66 0.0014 18.3 1.8 17 58-74 21-37 (57)
28 cd01266 PH_Gab Gab (Grb2-assoc 24.5 73 0.0016 19.8 2.2 15 54-68 94-108 (108)
29 smart00233 PH Pleckstrin homol 23.9 85 0.0018 17.3 2.3 15 54-68 87-101 (102)
30 KOG1136 Predicted cleavage and 23.3 63 0.0014 25.7 2.0 19 6-26 222-240 (501)
31 PF12006 DUF3500: Protein of u 23.0 59 0.0013 24.7 1.8 27 19-46 142-168 (313)
32 PF07521 RMMBL: RNA-metabolisi 22.1 1.1E+02 0.0024 16.0 2.3 19 3-25 20-38 (43)
33 cd01260 PH_CNK Connector enhan 22.1 78 0.0017 18.9 1.9 14 54-67 83-96 (96)
34 KOG1233 Alkyl-dihydroxyacetone 21.9 71 0.0015 25.9 2.0 23 2-26 169-191 (613)
35 PF07756 DUF1612: Protein of u 21.5 96 0.0021 20.8 2.4 19 54-72 10-28 (128)
36 PF04333 VacJ: VacJ like lipop 20.8 67 0.0015 22.9 1.6 27 17-46 117-143 (200)
37 PF15409 PH_8: Pleckstrin homo 20.8 89 0.0019 19.5 2.0 14 54-67 75-88 (89)
38 PF12515 CaATP_NAI: Ca2+-ATPas 20.5 1.5E+02 0.0032 16.5 2.6 16 54-69 15-30 (47)
39 cd01235 PH_SETbf Set binding f 20.5 95 0.0021 18.5 2.1 14 54-67 87-100 (101)
40 PF04899 MbeD_MobD: MbeD/MobD 20.3 84 0.0018 18.8 1.7 36 40-76 7-42 (70)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=1.4e-32 Score=230.64 Aligned_cols=90 Identities=31% Similarity=0.578 Sum_probs=86.9
Q ss_pred CchHHHHHHHhccccCCCCCeEEeeeeecCccccccccchHHHHHHHHHHhhCHHHHHHHHHHHHHhhcccccccCCCCC
Q 047212 1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHEAPK 80 (93)
Q Consensus 1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps~Vr~q~g~fg~af~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~~~~~ 80 (93)
||||||++|+||++ +.+++|+||||+|+|||||+|+|.||+||.+|+.+...+++++||+||++||+++||++.++++
T Consensus 82 wcl~el~~i~~~~~--~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~~~~ 159 (1153)
T PLN03210 82 WCLNELLEIVRCKE--ELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQWKQALTDVANILGYHSQNWPN 159 (1153)
T ss_pred HHHHHHHHHHHhhh--hcCceEEEEEecccHHHHhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhCcCceecCCCCC
Confidence 99999999999999 9999999999999999999999999999999998877899999999999999999999999999
Q ss_pred HhHHHchhhhcc
Q 047212 81 GLIAFRKIPCRL 92 (93)
Q Consensus 81 e~~~i~~Iv~~~ 92 (93)
|+++|++||.+|
T Consensus 160 E~~~i~~Iv~~v 171 (1153)
T PLN03210 160 EAKMIEEIANDV 171 (1153)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 2
>PLN03194 putative disease resistance protein; Provisional
Probab=99.93 E-value=1.1e-26 Score=163.21 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=65.7
Q ss_pred CchHHHHHHHhccccCCCCCeEEeeeeecCccccccc-cchHHHHHHHHHHhhCHHHHHHHHHHHHHhhcccccccCC-C
Q 047212 1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQ-NENFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALHE-A 78 (93)
Q Consensus 1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps~Vr~q-~g~fg~af~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~~-~ 78 (93)
||||||++|++|.+ .|+||||+|+|||||+| .|. ...+++++||.||++||+++|+++.. .
T Consensus 97 WCLdEL~~I~e~~~------~ViPIFY~VdPsdVr~q~~~~-----------~~~e~v~~Wr~AL~~va~l~G~~~~~~~ 159 (187)
T PLN03194 97 FCLHELALIMESKK------RVIPIFCDVKPSQLRVVDNGT-----------CPDEEIRRFNWALEEAKYTVGLTFDSLK 159 (187)
T ss_pred hHHHHHHHHHHcCC------EEEEEEecCCHHHhhccccCC-----------CCHHHHHHHHHHHHHHhccccccCCCCC
Confidence 99999999999855 79999999999999997 543 23689999999999999999998875 4
Q ss_pred CCHhHHHchhhhcc
Q 047212 79 PKGLIAFRKIPCRL 92 (93)
Q Consensus 79 ~~e~~~i~~Iv~~~ 92 (93)
++|+++|++||..+
T Consensus 160 ~~e~e~i~~iv~~v 173 (187)
T PLN03194 160 GNWSEVVTMASDAV 173 (187)
T ss_pred CCHHHHHHHHHHHH
Confidence 78999999998653
No 3
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.01 E-value=6.3e-11 Score=78.71 Aligned_cols=65 Identities=26% Similarity=0.373 Sum_probs=53.6
Q ss_pred CchHHHHHHHhccccCCCCCeEEeeeeecCccccc-cccchHHHHHHHHHHhhC----HHHHHHHHHHHH
Q 047212 1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVR-NQNENFAEAFVKHEARFM----LEKVKKWRAALT 65 (93)
Q Consensus 1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps~Vr-~q~g~fg~af~~~~~~~~----~e~v~~Wr~AL~ 65 (93)
||+.||..++++..+.....+|+||||+|.|++++ .+++.|+.+|..+..... ..+...|++++.
T Consensus 71 wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 71 WCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred chhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 89999999999988322259999999999999999 799999999988765444 357889999875
No 4
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=98.60 E-value=1e-07 Score=62.22 Aligned_cols=68 Identities=25% Similarity=0.494 Sum_probs=55.9
Q ss_pred CchHHHHHHHhccccCCCCCeEEeeeeecCccccccccchHHHHHHHHHHhhCHHHH-HHHHHHHHHhhc
Q 047212 1 RCFGEIVKTGNCKKHNNVRQTVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKV-KKWRAALTRAAN 69 (93)
Q Consensus 1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~V~ps~Vr~q~g~fg~af~~~~~~~~~e~v-~~Wr~AL~~v~~ 69 (93)
||..|+..+.++... .....||||+|+..|+++..+.+.++.+|..+...+..+.. ..|+.++..+++
T Consensus 71 w~~~E~~~a~~~~~~-~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~~fW~~~~~~l~~ 139 (140)
T smart00255 71 WCLDELVAALENALE-EGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKERFWKKALYAVPS 139 (140)
T ss_pred hHHHHHHHHHHHHHH-cCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhHHHHHHHHHHhcc
Confidence 899999999998762 26689999999999999999999999999888555543333 689999987764
No 5
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=83.00 E-value=0.93 Score=34.01 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=23.0
Q ss_pred chHHHHHHHhcccc--CCCCCeEEeeeeecCcc
Q 047212 2 CFGEIVKTGNCKKH--NNVRQTVLPVFFDISPS 32 (93)
Q Consensus 2 CLdEL~~I~e~~~~--~~~~~~ViPVFY~V~ps 32 (93)
|-|||.||..-.++ ...+..++|||--|||.
T Consensus 155 CPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPe 187 (280)
T KOG2792|consen 155 CPDELEKMSAVVDEIEAKPGLPPVPLFISVDPE 187 (280)
T ss_pred ChHHHHHHHHHHHHHhccCCCCccceEEEeCcc
Confidence 88999887664331 15677788999999993
No 6
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=64.89 E-value=5.2 Score=24.22 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=16.3
Q ss_pred CchHHHHHHHhccccCCCCCeEEeeeee
Q 047212 1 RCFGEIVKTGNCKKHNNVRQTVLPVFFD 28 (93)
Q Consensus 1 wCLdEL~~I~e~~~~~~~~~~ViPVFY~ 28 (93)
||..|+.... ..+..|+||..+
T Consensus 66 ~~~~E~~~a~------~~~~~iipv~~~ 87 (102)
T PF13676_consen 66 WCRFELGAAW------KRGKPIIPVRLD 87 (102)
T ss_dssp HHHHHHHHHH------CTSESEEEEECS
T ss_pred HHHHHHHHHH------HCCCEEEEEEEC
Confidence 7999988873 344489999943
No 7
>PHA03073 late transcription factor VLTF-2; Provisional
Probab=61.84 E-value=1.9 Score=29.55 Aligned_cols=42 Identities=26% Similarity=0.629 Sum_probs=25.6
Q ss_pred chHHHHHHHhc----cccCCCCCeEEe-eeeecCcccc-------ccccchHHHHHH
Q 047212 2 CFGEIVKTGNC----KKHNNVRQTVLP-VFFDISPSDV-------RNQNENFAEAFV 46 (93)
Q Consensus 2 CLdEL~~I~e~----~~~~~~~~~ViP-VFY~V~ps~V-------r~q~g~fg~af~ 46 (93)
|-|-+++++.. ++ +..-..+| +||+ +|.+| |+-.|.||..|.
T Consensus 82 CRDSfa~~Vk~~vALRE--ePKi~LLPl~~y~-~pe~V~niIN~LrnkegvYG~C~~ 135 (150)
T PHA03073 82 CRDSFASMVKSHVALRE--EPKITLLPLVFYE-DPEEVINIINLLRNKEGVYGSCFY 135 (150)
T ss_pred HHHHHHHHHHHHhhhcc--CCceEEechhhhc-CHHHHHHHHHhhhhhcCccceEEE
Confidence 66777777663 34 56678889 6776 55444 344566665543
No 8
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=57.00 E-value=2.4 Score=37.27 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=19.7
Q ss_pred CeEEeeeeecCccccccccchHHHHHHHHH
Q 047212 20 QTVLPVFFDISPSDVRNQNENFAEAFVKHE 49 (93)
Q Consensus 20 ~~ViPVFY~V~ps~Vr~q~g~fg~af~~~~ 49 (93)
+..||+||+.+|+.|-..+ .=-+.|.+..
T Consensus 34 LRlip~FYGa~p~rlv~k~-~~rksF~~yY 62 (1201)
T PF12128_consen 34 LRLIPFFYGADPSRLVPKT-SGRKSFDDYY 62 (1201)
T ss_pred HHHHHHhcCCCccccCCcc-chhhhHHHHc
Confidence 6789999999999984433 1124555543
No 9
>PHA00407 phage lambda Rz1-like protein
Probab=51.64 E-value=12 Score=23.22 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=18.8
Q ss_pred HHHHHHHHHHH-----HHhhcccccccCC
Q 047212 54 LEKVKKWRAAL-----TRAANLSGWALHE 77 (93)
Q Consensus 54 ~e~v~~Wr~AL-----~~v~~~~G~~~~~ 77 (93)
..+..+|+.|| .-|+.++|+.+..
T Consensus 25 kktl~rwkaaLIGlllicv~tISGCaSes 53 (84)
T PHA00407 25 KKTLRRWKAALIGLLLICVATISGCASES 53 (84)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 46789999997 4578899987654
No 10
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=45.16 E-value=6 Score=34.09 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHHhhCH------HH--HHHHHHHHHHhhcccc-------------cccCCCCCH-hHHHchhhhcc
Q 047212 38 NENFAEAFVKHEARFML------EK--VKKWRAALTRAANLSG-------------WALHEAPKG-LIAFRKIPCRL 92 (93)
Q Consensus 38 ~g~fg~af~~~~~~~~~------e~--v~~Wr~AL~~v~~~~G-------------~~~~~~~~e-~~~i~~Iv~~~ 92 (93)
+|.||=.|..+.+|... ++ --.|-+||.-||+.-+ ..+....|| .-+++|+++++
T Consensus 305 KGkFgwdfvns~dRit~PlIR~~~~f~evsWeEAl~~vA~rl~~ik~~yg~dsigfI~Ssk~TNEE~Yl~QKLaR~v 381 (978)
T COG3383 305 KGKFGWDFVNSRDRITKPLIREGDRFREVSWEEALDLVASRLREIKEKYGGDSIGFIASSKCTNEENYLMQKLARQV 381 (978)
T ss_pred eceecccccCChhHhcccccccCCceeeeeHHHHHHHHHHHHHHHHHHhCccceeeeccCCCCcHHHHHHHHHHHHH
Confidence 69999999999988752 11 2479999999987433 445555554 45888888764
No 11
>COG2975 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.41 E-value=23 Score=20.83 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=17.1
Q ss_pred hhcccccccCCCCCHhHHHchhh
Q 047212 67 AANLSGWALHEAPKGLIAFRKIP 89 (93)
Q Consensus 67 v~~~~G~~~~~~~~e~~~i~~Iv 89 (93)
|+.+.||+-...++..++++.|.
T Consensus 34 i~eL~~FdDDp~rs~EkiLEAi~ 56 (64)
T COG2975 34 ICELEEFDDDPQRSNEKILEAIQ 56 (64)
T ss_pred HHhCcccCCChhhccHHHHHHHH
Confidence 67788888777776677777764
No 12
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=37.04 E-value=38 Score=21.09 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=14.2
Q ss_pred hCHHHHHHHHHHHHHhhc
Q 047212 52 FMLEKVKKWRAALTRAAN 69 (93)
Q Consensus 52 ~~~e~v~~Wr~AL~~v~~ 69 (93)
++.+..+.|..++..+++
T Consensus 121 ~~~~~~~aW~~~~~~i~~ 138 (140)
T cd01040 121 FTPEVKAAWDKLLDVIAD 138 (140)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 447788889999988775
No 13
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=36.15 E-value=34 Score=21.19 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhh
Q 047212 54 LEKVKKWRAALTRAA 68 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v~ 68 (93)
++..+.|.+||..|+
T Consensus 88 ~ee~~eWi~ai~~v~ 102 (102)
T cd01241 88 PEEREEWIHAIQTVA 102 (102)
T ss_pred HHHHHHHHHHHHhhC
Confidence 678999999998874
No 14
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=34.25 E-value=19 Score=29.17 Aligned_cols=61 Identities=18% Similarity=0.143 Sum_probs=37.2
Q ss_pred chHHHHHHHhccccCCCCCe------------------------EEeeeeecCccccccccchHHHHHHHHHHhhCHHHH
Q 047212 2 CFGEIVKTGNCKKHNNVRQT------------------------VLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKV 57 (93)
Q Consensus 2 CLdEL~~I~e~~~~~~~~~~------------------------ViPVFY~V~ps~Vr~q~g~fg~af~~~~~~~~~e~v 57 (93)
|++++..|.|... .+|.. .-|||=++-- + -|+|.|.+.+-.--+. ...++
T Consensus 253 ~~~~~E~I~e~i~--e~GI~~m~d~~S~tak~ga~~~~~~~k~~m~p~f~~~~~-~--I~sG~fak~~m~d~~~-~~~~l 326 (487)
T PRK05225 253 IQFGWETITEALK--QGGITLMMDRLSNPAKIRAFELSEQLKEIMAPLFQKHMD-D--IISGEFSSTMMADWAN-DDKKL 326 (487)
T ss_pred HhhhHHHHHHHHH--hccHHHHHHhccchhhcccccccHHHHHHHHHHHHHHHH-H--hhccHHHHHHHHHHhc-CChHH
Confidence 6677777877776 44433 4566633111 1 2678888776654332 35678
Q ss_pred HHHHHHHHHhh
Q 047212 58 KKWRAALTRAA 68 (93)
Q Consensus 58 ~~Wr~AL~~v~ 68 (93)
.+||+++..-.
T Consensus 327 ~~~r~~~~~~~ 337 (487)
T PRK05225 327 LTWREETGKTA 337 (487)
T ss_pred HHHHHHhhcCc
Confidence 99999876543
No 15
>TIGR02453 conserved hypothetical protein TIGR02453. Members of this family are widely (though sparsely) distributed bacterial proteins about 230 residues in length. All members have a motif RxxRDxRFxxx[DN]KxxY. The function of this protein family is unknown. In several fungi, this model identifies a conserved region of a longer protein. Therefore, it may be incorrect to speculate that all members share a common function.
Probab=33.76 E-value=46 Score=23.88 Aligned_cols=54 Identities=22% Similarity=0.395 Sum_probs=35.2
Q ss_pred eEEeeee-ecCccccccccchHH---HHHHHHHHhhCHHHHHHHHHHHHHhhccccccc
Q 047212 21 TVLPVFF-DISPSDVRNQNENFA---EAFVKHEARFMLEKVKKWRAALTRAANLSGWAL 75 (93)
Q Consensus 21 ~ViPVFY-~V~ps~Vr~q~g~fg---~af~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~ 75 (93)
.--|.|| +++|....--.|.|. +.+....+.. .+.-..|+++|.......|+.+
T Consensus 94 ~~~~gyY~hi~p~~~~~g~G~~~p~~~~L~~iR~~I-~~~~~~~~~il~~~~~~~~f~~ 151 (217)
T TIGR02453 94 LEAPGFYLHLQPDGSFAGGGLWGPEAETLAAVRAAI-AENPDGWKAAVAALKFLRGFPL 151 (217)
T ss_pred CCCceEEEEEcCCCeEEEEEeCCCCHHHHHHHHHHH-HhCHHHHHHHHhChhhhccCCC
Confidence 3467777 899988777677665 4444444433 3445788888877776566654
No 16
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=33.35 E-value=26 Score=21.69 Aligned_cols=19 Identities=26% Similarity=0.594 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 047212 54 LEKVKKWRAALTRAANLSG 72 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v~~~~G 72 (93)
.+-+.+|+.||..+.+..+
T Consensus 23 ~~Al~~W~~aL~k~~~~~~ 41 (80)
T PF10579_consen 23 QQALQKWRKALEKITDRED 41 (80)
T ss_pred HHHHHHHHHHHhhcCChHH
Confidence 4568999999999988654
No 17
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=33.19 E-value=79 Score=27.27 Aligned_cols=47 Identities=15% Similarity=0.336 Sum_probs=31.6
Q ss_pred hHHHHHHHhccccCCCCC--------eEEeeeeecCccccccccchHHHHHHHHHHhhCHHHHHHHHHHHHHhhcccc
Q 047212 3 FGEIVKTGNCKKHNNVRQ--------TVLPVFFDISPSDVRNQNENFAEAFVKHEARFMLEKVKKWRAALTRAANLSG 72 (93)
Q Consensus 3 LdEL~~I~e~~~~~~~~~--------~ViPVFY~V~ps~Vr~q~g~fg~af~~~~~~~~~e~v~~Wr~AL~~v~~~~G 72 (93)
|.||.+|.+ +.++ .|||.-|+++|.--. .-.+..|+.+|..+.++-.
T Consensus 270 L~~L~~IA~-----~~~~~~~v~i~f~iIsa~fD~N~~~s~------------------yMpid~W~~~l~~~~slLd 324 (843)
T KOG1076|consen 270 LEELLTIAE-----TPGQGVKVKIKFNIISARFDYNAGLSG------------------YMPIDQWKKCLNNMNSLLD 324 (843)
T ss_pred HHHHHHHHc-----ccCcceEEEEEEEEeehhhccCcCccc------------------CcCHHHHHHHHHHHHHHHH
Confidence 678888876 3343 577777887775221 2347789999888877654
No 18
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=30.37 E-value=1.2e+02 Score=23.41 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhhc
Q 047212 54 LEKVKKWRAALTRAAN 69 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v~~ 69 (93)
+.-++.|++||+.++.
T Consensus 304 pn~~~~W~~~l~~~~g 319 (322)
T PRK02797 304 PNYLQGWRNALAIAAG 319 (322)
T ss_pred HhHHHHHHHHHHHhhC
Confidence 5668999999987764
No 19
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=30.34 E-value=41 Score=26.06 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=36.7
Q ss_pred chHHHHHHHhccccC--------------CCCCeEEeeeee-cCcccccc-----ccchHHHHHHHHHHhhCHHHHHHHH
Q 047212 2 CFGEIVKTGNCKKHN--------------NVRQTVLPVFFD-ISPSDVRN-----QNENFAEAFVKHEARFMLEKVKKWR 61 (93)
Q Consensus 2 CLdEL~~I~e~~~~~--------------~~~~~ViPVFY~-V~ps~Vr~-----q~g~fg~af~~~~~~~~~e~v~~Wr 61 (93)
||+||..|++.+-+. -++.+.-|=.++ ..+...+. |+|+|.+.|..-.+. ...++.+||
T Consensus 229 ~lhE~klIvdLiyegGi~~M~~siSnTAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~~-g~p~l~~~r 307 (338)
T COG0059 229 CLHELKLIVDLIYEGGITNMRYSISNTAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQA-GRPKLEALR 307 (338)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcCCHHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhhc-CCHHHHHHH
Confidence 899999998866410 123566663333 33333332 789999888754332 245667776
Q ss_pred HHH
Q 047212 62 AAL 64 (93)
Q Consensus 62 ~AL 64 (93)
+..
T Consensus 308 ~~~ 310 (338)
T COG0059 308 EET 310 (338)
T ss_pred HHh
Confidence 554
No 20
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=28.43 E-value=64 Score=20.01 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhcc
Q 047212 54 LEKVKKWRAALTRAANL 70 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v~~~ 70 (93)
++....|.+||..|.+.
T Consensus 86 ~~e~~~Wi~ai~~v~~~ 102 (103)
T cd01251 86 EQDRREWIAAFQNVLSR 102 (103)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 67789999999998764
No 21
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=26.83 E-value=69 Score=19.74 Aligned_cols=16 Identities=13% Similarity=0.331 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhc
Q 047212 54 LEKVKKWRAALTRAAN 69 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v~~ 69 (93)
++...+|.+||..+.+
T Consensus 85 ~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 85 QKEKNDWVQAIFSIID 100 (101)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6788999999998864
No 22
>cd03063 TRX_Fd_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NAD-dependent formate dehydrogenase (FDH) beta subunit; composed of proteins similar to the beta subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH beta subunit contains a NADH:ubiquinone oxidoreductase (Nuo) F domain C-terminal to a Fd-like domain without the active site cysteines. The absence of conserved metal-binding residues in the putative active site suggests that members of this subfamily have lost the ability to bind iron-sulfur clusters in the N-terminal Fd-like domain. The C-terminal NuoF domain is a component of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. NuoF contains one [4Fe-4S] c
Probab=26.28 E-value=33 Score=21.47 Aligned_cols=12 Identities=33% Similarity=0.755 Sum_probs=9.9
Q ss_pred eee-ecCcccccc
Q 047212 25 VFF-DISPSDVRN 36 (93)
Q Consensus 25 VFY-~V~ps~Vr~ 36 (93)
||| +|+|.||..
T Consensus 60 v~Y~~V~~edv~~ 72 (92)
T cd03063 60 VAYGPVTPADVAS 72 (92)
T ss_pred EEEEeCCHHHHHH
Confidence 999 599999854
No 23
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=26.18 E-value=77 Score=18.02 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHhh
Q 047212 54 LEKVKKWRAALTRAA 68 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v~ 68 (93)
.+....|.+||..+.
T Consensus 89 ~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 89 EEERKRWIQAIQKAI 103 (104)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 678999999998875
No 24
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=25.43 E-value=66 Score=24.33 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=26.5
Q ss_pred eecCccccccccchHHHHHHHHHH-hhCHHHHHHHHHHHHHhhc
Q 047212 27 FDISPSDVRNQNENFAEAFVKHEA-RFMLEKVKKWRAALTRAAN 69 (93)
Q Consensus 27 Y~V~ps~Vr~q~g~fg~af~~~~~-~~~~e~v~~Wr~AL~~v~~ 69 (93)
|+|+|.+-..-.+.+=.++.++-. .++++....|.+++..+++
T Consensus 88 ~gV~~~~f~~~~~~ll~~l~~~~~~~~t~~~~~AW~~~~~~l~~ 131 (399)
T PRK13289 88 LQIKPEHYPIVGEHLLAAIREVLGDAATDEVLDAWGEAYGVLAD 131 (399)
T ss_pred cCCChHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 667776654433334444444433 4567788899998876664
No 25
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.16 E-value=1.6e+02 Score=24.96 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=45.1
Q ss_pred CCCCeEEeeeeecCccccccc-cchHHHHHHHHHHhhC--HHHHHHHHHHHHHhhcccccccC
Q 047212 17 NVRQTVLPVFFDISPSDVRNQ-NENFAEAFVKHEARFM--LEKVKKWRAALTRAANLSGWALH 76 (93)
Q Consensus 17 ~~~~~ViPVFY~V~ps~Vr~q-~g~fg~af~~~~~~~~--~e~v~~Wr~AL~~v~~~~G~~~~ 76 (93)
.+|...+|-|.-+|++|+-.. ...|...+..+.+.+. .++|...+.++...+..-|..+.
T Consensus 140 l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~ 202 (660)
T KOG4302|consen 140 LGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFS 202 (660)
T ss_pred hcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 455689999999999999743 3456666655554333 67788899999999998888776
No 26
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=24.59 E-value=33 Score=23.90 Aligned_cols=7 Identities=57% Similarity=1.383 Sum_probs=6.5
Q ss_pred eeeeecC
Q 047212 24 PVFFDIS 30 (93)
Q Consensus 24 PVFY~V~ 30 (93)
||||+||
T Consensus 22 PVffKvD 28 (161)
T PF15043_consen 22 PVFFKVD 28 (161)
T ss_pred cEEEEec
Confidence 8999998
No 27
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=24.54 E-value=66 Score=18.34 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=13.2
Q ss_pred HHHHHHHHHhhcccccc
Q 047212 58 KKWRAALTRAANLSGWA 74 (93)
Q Consensus 58 ~~Wr~AL~~v~~~~G~~ 74 (93)
++||+.+.++++++.-.
T Consensus 21 ~~~r~~l~~l~~~p~~~ 37 (57)
T PF09838_consen 21 ERWRRMLRQLAQLPDRQ 37 (57)
T ss_pred HHHHHHHHHHHhCCHHH
Confidence 46899999998887543
No 28
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=24.49 E-value=73 Score=19.78 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhh
Q 047212 54 LEKVKKWRAALTRAA 68 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v~ 68 (93)
++.++.|..|+.+++
T Consensus 94 ~ee~~~Wi~~I~~~~ 108 (108)
T cd01266 94 EEEMTLWVNCICKLC 108 (108)
T ss_pred HHHHHHHHHHHHhhC
Confidence 788999999998774
No 29
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=23.92 E-value=85 Score=17.34 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhh
Q 047212 54 LEKVKKWRAALTRAA 68 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v~ 68 (93)
.+...+|..||..++
T Consensus 87 ~~~~~~W~~~i~~~~ 101 (102)
T smart00233 87 EEEREEWVDALRKAI 101 (102)
T ss_pred HHHHHHHHHHHHHhh
Confidence 678999999998765
No 30
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=23.33 E-value=63 Score=25.72 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=17.2
Q ss_pred HHHHHhccccCCCCCeEEeee
Q 047212 6 IVKTGNCKKHNNVRQTVLPVF 26 (93)
Q Consensus 6 L~~I~e~~~~~~~~~~ViPVF 26 (93)
|.+.-||.. .+|.++||||
T Consensus 222 Lk~VhecVa--~GGkvlIPvF 240 (501)
T KOG1136|consen 222 LKKVHECVA--RGGKVLIPVF 240 (501)
T ss_pred HHHHHHHHh--cCCeEEEEee
Confidence 778888988 8999999999
No 31
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=22.99 E-value=59 Score=24.66 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=20.0
Q ss_pred CCeEEeeeeecCccccccccchHHHHHH
Q 047212 19 RQTVLPVFFDISPSDVRNQNENFAEAFV 46 (93)
Q Consensus 19 ~~~ViPVFY~V~ps~Vr~q~g~fg~af~ 46 (93)
...+-|+||+.+|..|....| -.+.|.
T Consensus 142 ~v~~tP~F~Ga~P~~~~~~~G-~~~~l~ 168 (313)
T PF12006_consen 142 QVSITPTFFGAEPAEVDEYKG-TLRVLA 168 (313)
T ss_pred CEEECceeeCCCCCcccccCC-ccchhH
Confidence 346789999999999987777 333443
No 32
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=22.14 E-value=1.1e+02 Score=16.01 Aligned_cols=19 Identities=16% Similarity=0.071 Sum_probs=13.9
Q ss_pred hHHHHHHHhccccCCCCCeEEee
Q 047212 3 FGEIVKTGNCKKHNNVRQTVLPV 25 (93)
Q Consensus 3 LdEL~~I~e~~~~~~~~~~ViPV 25 (93)
-++|.++++..+ . ..++||
T Consensus 20 ~~~L~~~i~~~~--p--~~vilV 38 (43)
T PF07521_consen 20 REELLEFIEQLN--P--RKVILV 38 (43)
T ss_dssp HHHHHHHHHHHC--S--SEEEEE
T ss_pred HHHHHHHHHhcC--C--CEEEEe
Confidence 367888888776 4 677776
No 33
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=22.07 E-value=78 Score=18.90 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHh
Q 047212 54 LEKVKKWRAALTRA 67 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v 67 (93)
.+.+++|..||..+
T Consensus 83 ~~e~~~Wi~ai~~~ 96 (96)
T cd01260 83 LDDLSQWVNHLITA 96 (96)
T ss_pred HHHHHHHHHHHHhC
Confidence 67899999999753
No 34
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=21.87 E-value=71 Score=25.91 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=18.5
Q ss_pred chHHHHHHHhccccCCCCCeEEeee
Q 047212 2 CFGEIVKTGNCKKHNNVRQTVLPVF 26 (93)
Q Consensus 2 CLdEL~~I~e~~~~~~~~~~ViPVF 26 (93)
|-||.++|++..- +-...++||=
T Consensus 169 chdevVkiv~lA~--khN~~iiPiG 191 (613)
T KOG1233|consen 169 CHDEVVKIVELAM--KHNCAIIPIG 191 (613)
T ss_pred chHHHHHHHHHHh--hcCeEEEEeC
Confidence 8999999999755 5667888864
No 35
>PF07756 DUF1612: Protein of unknown function (DUF1612); InterPro: IPR011670 This family includes sequences of largely unknown function but which share a number of features in common. They are expressed by bacterial species, and in many cases these bacteria are known to associate symbiotically with plants. Moreover, the majority are coded for by plasmids, which in many cases are known to confer on the organism the ability to interact symbiotically with leguminous plants. An example of such a plasmid is NGR234, which encodes Y4CF, a protein of unknown function that is a member of this family []. Other members of this family are expressed by organisms with a documented genomic similarity to plant symbionts [].
Probab=21.54 E-value=96 Score=20.83 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhcccc
Q 047212 54 LEKVKKWRAALTRAANLSG 72 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v~~~~G 72 (93)
.+++..|+..|.++.+++.
T Consensus 10 ~~RL~eWr~vl~~~~~LPp 28 (128)
T PF07756_consen 10 DERLDEWRAVLREAEALPP 28 (128)
T ss_pred HHHHHHHHHHHHHHhhCCH
Confidence 5789999999999999875
No 36
>PF04333 VacJ: VacJ like lipoprotein; InterPro: IPR007428 Lipoproteins in Gram-negative microbes also act as structural stabilisers, forming non-covalent bonds with peptidoglycan on the outer membrane of the cell []. Following completion of the genomes of several Gram-negative prokaryotes, a putative lipoprotein, VacJ, has been discovered in the raw sequence open reading frames. Biochemical analysis of the Shigella flexneri VacJ protein revealed it to be essential for virulence, promoting spread of bacterial cells through the intercellular space of tissues []. Upon expression in the facultative intracellular microbe, host cells form membranous protrusions containing the pathogen, allowing it to move to the cytoplasm of the next target cell. As homologues of this lipoprotein have largely been found in obligate or facultative intracellular microbial genomes, it appears to be specific for that particular lifestyle []. ; GO: 0016020 membrane
Probab=20.82 E-value=67 Score=22.92 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCCCeEEeeeeecCccccccccchHHHHHH
Q 047212 17 NVRQTVLPVFFDISPSDVRNQNENFAEAFV 46 (93)
Q Consensus 17 ~~~~~ViPVFY~V~ps~Vr~q~g~fg~af~ 46 (93)
.+.-+|+|++ -||.+|.-.|..++.+.
T Consensus 117 ~GpYlvLP~l---GPst~RD~~G~~~d~~~ 143 (200)
T PF04333_consen 117 EGPYLVLPFL---GPSTLRDAVGLVVDSFL 143 (200)
T ss_pred CCCeEEEecC---CCCchhhccchhhhhcc
Confidence 4557899986 89999999999888875
No 37
>PF15409 PH_8: Pleckstrin homology domain
Probab=20.80 E-value=89 Score=19.48 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHh
Q 047212 54 LEKVKKWRAALTRA 67 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v 67 (93)
++..+.|..||..+
T Consensus 75 ~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 75 QEDFQRWVSALQKA 88 (89)
T ss_pred HHHHHHHHHHHHhc
Confidence 67899999999864
No 38
>PF12515 CaATP_NAI: Ca2+-ATPase N terminal autoinhibitory domain; InterPro: IPR024750 This entry represents the N-terminal autoinhibitory calmodulin-binding domain characteristic of certain calcium-transporting ATPases []. This domain binds calmodulin in a calcium-dependent fashion and has a conserved RRFR sequence motif. There are two completely conserved residues (F and W) that may be functionally important.; GO: 0005516 calmodulin binding
Probab=20.50 E-value=1.5e+02 Score=16.50 Aligned_cols=16 Identities=31% Similarity=0.640 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHhhc
Q 047212 54 LEKVKKWRAALTRAAN 69 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v~~ 69 (93)
.|..++||.|..-|-|
T Consensus 15 ~e~l~rWR~a~~lv~N 30 (47)
T PF12515_consen 15 EEALRRWRQAVGLVKN 30 (47)
T ss_pred HHHHHHHHHHhHHhcc
Confidence 7889999999764444
No 39
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=20.47 E-value=95 Score=18.45 Aligned_cols=14 Identities=7% Similarity=0.726 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHh
Q 047212 54 LEKVKKWRAALTRA 67 (93)
Q Consensus 54 ~e~v~~Wr~AL~~v 67 (93)
++..+.|..||.++
T Consensus 87 ~~e~~~Wi~ai~~~ 100 (101)
T cd01235 87 INEAQRWKEKIQQC 100 (101)
T ss_pred HHHHHHHHHHHHhh
Confidence 67889999999875
No 40
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=20.28 E-value=84 Score=18.78 Aligned_cols=36 Identities=6% Similarity=0.235 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhhCHHHHHHHHHHHHHhhcccccccC
Q 047212 40 NFAEAFVKHEARFMLEKVKKWRAALTRAANLSGWALH 76 (93)
Q Consensus 40 ~fg~af~~~~~~~~~e~v~~Wr~AL~~v~~~~G~~~~ 76 (93)
.+-.||..+...| ...-+.|..|....-...+....
T Consensus 7 qLl~ale~Lq~~y-~~q~~~Wq~sy~~Lq~~~~~t~~ 42 (70)
T PF04899_consen 7 QLLSALEELQQSY-EKQQQEWQSSYADLQHMFEQTSQ 42 (70)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHH
Confidence 3456777777776 45677888888777766665543
Done!