BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047214
(658 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 83/329 (25%), Positives = 137/329 (41%), Gaps = 67/329 (20%)
Query: 55 VGIWGMGGIGKTTLATAIFNQFS---SEFEGRCFLSDIRKNSETGGGKILS------EKL 105
V I+GM G GK+ LA S F G I K ++G L ++
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 106 EVAGANIPHFTKERVRRMKVL---------IVLDDVNEVGQLEGLIGELDQFGPGSRIVV 156
E +P +E R++VL ++LDDV + L+ F +I++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDNQCQILL 262
Query: 157 TTRDKRVLEKFRGEKKIYRV-NGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADG 215
TTRDK V + G K + V +GL E+ E F N EDL + +++ G
Sbjct: 263 TTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSIIKECKG 319
Query: 216 NPLVPKVLGSSLCLKRKSHWENLLHDLN-----RICESDIHD---IYKKLKITFDELTPR 267
+PLV ++G +L + W L L RI +S +D + + + I+ + L
Sbjct: 320 SPLVVSLIG-ALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 378
Query: 268 VQSIFLDIACFFEGEDKDF-----VARILDDSES----DGLDVLIDKSLISISGN----C 314
++ + D++ KD V +L D E+ D L ++KSL+ + N C
Sbjct: 379 IKDYYTDLSIL----QKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFC 434
Query: 315 LQMHDL------------LQEMGQQIVRQ 331
+HDL LQ++ +++V Q
Sbjct: 435 YYLHDLQVDFLTEKNRSQLQDLHRKMVTQ 463
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 66/175 (37%), Gaps = 17/175 (9%)
Query: 492 LETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNL-- 549
LET L +P+SI + L LS C L P + VNL
Sbjct: 129 LETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTD-ASGEHQGLVNLQS 187
Query: 550 --IEFPQISG---------KITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRIST 598
+E+ I + L + S + + +I L LE LDLR C L+
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247
Query: 599 RFCKLRSLVDLFLHGCLNLQSLP---ALPLCLKSLDLRDCKMLQSLPELPSCLEA 650
F L L L C NL +LP L+ LDLR C L LP L + L A
Sbjct: 248 IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 62/170 (36%), Gaps = 55/170 (32%)
Query: 469 KLKSINLSHCRHFIDMSYPSAP-----------NLETYLLDYTNFACVPSSIQNFKYLSA 517
+L+ +++ C ++ P A NL++ L++T +P+SI N + L +
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 518 LS-----------------------FEGCKSLRSFPSNFRFVCPVT-INFSSCVNLIEFP 553
L GC +LR++P F P+ + C NL+ P
Sbjct: 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Query: 554 QISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKL 603
I LT LE LDLR C L R+ + +L
Sbjct: 271 L--------------------DIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
Query: 424 NLRYLHWDKYPLRTLPSNFKP-ENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHC---R 479
NL+ L + +R+LP++ +NL L + S + L KL+ ++L C R
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 480 HFIDMSYPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPS 531
++ + AP L D +N +P I L L GC +L PS
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 19/134 (14%)
Query: 540 TINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTR 599
TI+ + L + Q + L L ++ + +P+SI L L L +R C L +
Sbjct: 110 TIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169
Query: 600 FCKLRSLVDLFLHGCLNLQSL-------PALPLC------LKSLDLRDCKMLQSLP---E 643
+ + G +NLQSL +LP LKSL +R+ + P
Sbjct: 170 LASTDASGE--HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH 227
Query: 644 LPSCLEALDLTSCN 657
LP LE LDL C
Sbjct: 228 LPK-LEELDLRGCT 240
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 136/329 (41%), Gaps = 67/329 (20%)
Query: 55 VGIWGMGGIGKTTLATAIFNQFS---SEFEGRCFLSDIRKNSETGGGKILS------EKL 105
V I+GM G GK+ LA S F G I K ++G L ++
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 216
Query: 106 EVAGANIPHFTKERVRRMKVL---------IVLDDVNEVGQLEGLIGELDQFGPGSRIVV 156
E +P +E R++VL ++LDDV + L+ F +I++
Sbjct: 217 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDNQCQILL 269
Query: 157 TTRDKRVLEKFRGEKKIYRV-NGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADG 215
TT DK V + G K + V +GL E+ E F N EDL + +++ G
Sbjct: 270 TTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSIIKECKG 326
Query: 216 NPLVPKVLGSSLCLKRKSHWENLLHDLN-----RICESDIHD---IYKKLKITFDELTPR 267
+PLV ++G +L + W L L RI +S +D + + + I+ + L
Sbjct: 327 SPLVVSLIG-ALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 385
Query: 268 VQSIFLDIACFFEGEDKDF-----VARILDDSES----DGLDVLIDKSLISISGN----C 314
++ + D++ KD V +L D E+ D L ++KSL+ + N C
Sbjct: 386 IKDYYTDLSIL----QKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFC 441
Query: 315 LQMHDL------------LQEMGQQIVRQ 331
+HDL LQ++ +++V Q
Sbjct: 442 YYLHDLQVDFLTEKNRSQLQDLHRKMVTQ 470
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 38/249 (15%)
Query: 55 VGIWGMGGIGKTTLATAIFNQFS---SEFEGRCFLSDIRKNSETGGGKILS------EKL 105
V I GM G GK+ LA S F G + K ++G L ++
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 209
Query: 106 EVAGANIPHFTKERVRRMKVL---------IVLDDVNEVGQLEGLIGELDQFGPGSRIVV 156
E +P +E R+++L ++LDDV + L+ F +I++
Sbjct: 210 ESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILL 262
Query: 157 TTRDKRVLEKFRGEKKIYRV-NGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADG 215
TTRDK V + G K + V + L E+ E F N DL + +++ G
Sbjct: 263 TTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV---NMKKADLPEQAHSIIKECKG 319
Query: 216 NPLVPKVLGSSLCLKRKSHWENLLHDLN-----RICESDIHD---IYKKLKITFDELTPR 267
+PLV ++G +L + WE L L RI +S +D + + + I+ + L
Sbjct: 320 SPLVVSLIG-ALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 378
Query: 268 VQSIFLDIA 276
++ + D++
Sbjct: 379 IKDYYTDLS 387
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 38/249 (15%)
Query: 55 VGIWGMGGIGKTTLATAIFNQFS---SEFEGRCFLSDIRKNSETGGGKILS------EKL 105
V I GM G GK+ LA S F G + K ++G L ++
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQD 215
Query: 106 EVAGANIPHFTKERVRRMKVL---------IVLDDVNEVGQLEGLIGELDQFGPGSRIVV 156
E +P +E R+++L ++LDDV + L+ F +I++
Sbjct: 216 ESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA-------FDSQCQILL 268
Query: 157 TTRDKRVLEKFRGEKKIYRV-NGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADG 215
TTRDK V + G K + V + L E+ E F N DL + +++ G
Sbjct: 269 TTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFV---NMKKADLPEQAHSIIKECKG 325
Query: 216 NPLVPKVLGSSLCLKRKSHWENLLHDLN-----RICESDIHD---IYKKLKITFDELTPR 267
+PLV ++G +L + WE L L RI +S +D + + + I+ + L
Sbjct: 326 SPLVVSLIG-ALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED 384
Query: 268 VQSIFLDIA 276
++ + D++
Sbjct: 385 IKDYYTDLS 393
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 62/127 (48%), Gaps = 24/127 (18%)
Query: 547 VNLIEFP-QISGKITRLYLGQSAI---EEVPSSIECL--------------TDLEVLDLR 588
+NL P + +IT L + Q+A+ E+P+S+E L L+ LD+
Sbjct: 69 LNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDV- 127
Query: 589 DCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLPALPLCLKSLDLRDCKMLQSLPELPSCL 648
D +L T +L +L++ L LP LP L+ L +R+ L LPELP L
Sbjct: 128 DNNQL----TXLPELPALLEYINADNNQLTXLPELPTSLEVLSVRN-NQLTFLPELPESL 182
Query: 649 EALDLTS 655
EALD+++
Sbjct: 183 EALDVST 189
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 15/89 (16%)
Query: 377 LDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLR 436
L +G F ++NL+ L +E QL LPDG+ NL YL+ L+
Sbjct: 100 LPNGVFDKLTNLKELVL---------VENQLQS----LPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 437 TLPSNF--KPENLVELNLHFSKVEQLWEG 463
+LP K NL EL+L +++++ L EG
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 559 ITRLYLGQSAIEEVPSSIECLTDLEVLDL 587
+TRLYL +++ E+P+ I+ L++L VLDL
Sbjct: 249 LTRLYLNGNSLTELPAEIKNLSNLRVLDL 277
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 35/168 (20%)
Query: 417 GLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLS 476
GL LP NL YL+ +R+L P +L ELN+ +K+ +L ++
Sbjct: 291 GLSELPPNLYYLNASSNEIRSLCD--LPPSLEELNVSNNKL----------IELPAL--- 335
Query: 477 HCRHFIDMSYPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFV 536
P LE + + + A VP QN K L LR FP V
Sbjct: 336 ------------PPRLERLIASFNHLAEVPELPQNLKQLHV----EYNPLREFPDIPESV 379
Query: 537 CPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSIECLTDLEV 584
+ +N +L E P++ + +L++ + + E P E + DL +
Sbjct: 380 EDLRMN----SHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRM 423
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 617 LQSLPALPLCLKSLDLRDCKMLQSLPELPSCLEALDLT 654
L++LP LP L++L++RD L LPELP L LD++
Sbjct: 249 LKTLPDLPPSLEALNVRD-NYLTDLPELPQSLTFLDVS 285
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 599 RFCKLRSLVDLFLHGCLNLQSLPALPLCLKSLDLRDCKMLQSLPELPSCLEALDLTSCNM 658
R C R +L L+ L L SLP LP L+SL + C L LPELP L++L + + N+
Sbjct: 66 RDCLDRQAHELELNN-LGLSSLPELPPHLESL-VASCNSLTELPELPQSLKSLLVDNNNL 123
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 27/150 (18%)
Query: 511 NFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIE 570
N YL+A S E +SL P + +N S+ LIE P + ++ RL + +
Sbjct: 298 NLYYLNASSNE-IRSLCDLPPSLE-----ELNVSNN-KLIELPALPPRLERLIASFNHLA 350
Query: 571 EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLF-----LHGCLNLQSLPALPL 625
EVP + LK++ + LR D+ L +L +P LP
Sbjct: 351 EVPEL--------------PQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396
Query: 626 CLKSLDLRDCKMLQSLPELPSCLEALDLTS 655
LK L + + L+ P++P +E L + S
Sbjct: 397 NLKQLHV-ETNPLREFPDIPESVEDLRMNS 425
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 9/107 (8%)
Query: 549 LIEFPQISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLV- 607
L + P + + + G + +EE+P ++ L L + D LK++ L S+V
Sbjct: 165 LKKLPDLPPSLEFIAAGNNQLEELPE-LQNLPFLTAI-YADNNSLKKLPDLPLSLESIVA 222
Query: 608 -DLFLHGCLNLQSLPALPLCLKSLDLRDCKMLQSLPELPSCLEALDL 653
+ L LQ+LP L + D +L++LP+LP LEAL++
Sbjct: 223 GNNILEELPELQNLPFL-----TTIYADNNLLKTLPDLPPSLEALNV 264
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 22/152 (14%)
Query: 418 LDYLPKNLRY--LHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINL 475
LD LP L+ L +D L TLP F P L F + +LW K ++ K NL
Sbjct: 260 LDQLPSKLQKDPLKFDAPQLLTLPDIF-PNGLAN-KFTFMPIGELWYRKSGTYRNKVQNL 317
Query: 476 SHCRHFIDM------SYPSAPNLETYLLDYT----NFACVPSSIQNFKYLSALSF----- 520
+ H +DM +Y SA L+ + T F + IQ + S L+
Sbjct: 318 TQFYHPLDMFGEWNRAYGSAGFLQYQFVVPTEAVEEFKSIIVDIQRSGHYSFLNVFKLFG 377
Query: 521 EGCKSLRSFPSNFRFVCPVTINFSSCVNLIEF 552
G ++ SFP VC ++F L EF
Sbjct: 378 PGNQAPLSFPIPGWNVC---VDFPIKAGLHEF 406
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 92 NSETGGGKILSEKLE--VAGANIPHFTKERVRRMKVLIVLDDVN-EVGQ 137
N+ GG ++L+EKL VAG NIPH + V I + V +VGQ
Sbjct: 259 NTSPGGARLLAEKLRQSVAGMNIPHIAPVPGSSLTVSIGVATVTPQVGQ 307
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 22/152 (14%)
Query: 418 LDYLPKNLRY--LHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINL 475
LD LP L+ L +D L TLP F P L F + +LW K ++ K NL
Sbjct: 195 LDQLPSKLQKDPLKFDAPQLLTLPDIF-PNGLAN-KFTFMPIGELWYRKSGTYRNKVQNL 252
Query: 476 SHCRHFIDM------SYPSAPNLETYLLDYT----NFACVPSSIQNFKYLSALSF----- 520
+ H +DM +Y SA L+ + T F + IQ + S L+
Sbjct: 253 TQFYHPLDMFGEWNRAYGSAGFLQYQFVVPTEAVEEFKSIIVDIQRSGHYSFLNVFKLFG 312
Query: 521 EGCKSLRSFPSNFRFVCPVTINFSSCVNLIEF 552
G ++ SFP VC ++F L EF
Sbjct: 313 PGNQAPLSFPIPGWNVC---VDFPIKAGLHEF 341
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 143 GELDQFGPGSRIVVTTRDKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDL 202
GEL+Q GPG + +T D+ ++ RG+ ++ N + +AF+ + EE P
Sbjct: 295 GELEQAGPGQAVTLTXEDE--IDISRGDLLVHADNVPQVSDAFDAXLVWXAEEPXLPGK- 351
Query: 203 NWHSQRVVEYADGN 216
+ +R Y G+
Sbjct: 352 KYDIKRATSYVPGS 365
>pdb|4FDN|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Hexagonal Crystal Form
pdb|4FDO|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct319
pdb|4FDP|A Chain A, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FDP|B Chain B, Mycobacterium Tuberculosis Dpre1 - Monoclinic Crystal Form
pdb|4FEH|A Chain A, Mycobacterium Tuberculosis Dpre1 - Hexagonal Crystal Form
pdb|4FF6|A Chain A, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
pdb|4FF6|B Chain B, Mycobacterium Tuberculosis Dpre1 In Complex With Ct325 -
Monoclinic Crystal Form
Length = 481
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 418 LDYLPKNLRY--LHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINL 475
++ LP LR L +D L TLP F P L F + +LW K ++ K NL
Sbjct: 273 VEQLPAKLRSEPLKFDAPQLLTLPDVF-PNGLAN-KYTFGPIGELWYRKSGTYRGKVQNL 330
Query: 476 SHCRHFIDM 484
+ H +DM
Sbjct: 331 TQFYHPLDM 339
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 25 DSSNGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEG 82
D+++ ++ + + + I L D S+ ++ +G G + L A+ +FS+E+E
Sbjct: 794 DATSTIISITNNV--IGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYEL 851
Query: 83 RCFLSDIRKNSETG---GGKILSEKLEVAGANI 112
+ + N ETG G + L + LE ANI
Sbjct: 852 QQLEQFKKDNEETGFGSGTRALEQALEKTKANI 884
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 549 LIEFPQISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVD 608
L P + ++ +L+ + + +P L +L V D L + + KL + +
Sbjct: 153 LASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSD-NQLASLPTLPSELYKLWAYNN 211
Query: 609 LFLHGCLNLQSLPALPLCLKSLDLRDCKMLQSLPELPSCLEAL 651
L SLPALP LK L + + L SLP LPS L+ L
Sbjct: 212 -------RLTSLPALPSGLKELIVSGNR-LTSLPVLPSELKEL 246
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 377 LDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLR 436
L +G F ++NL+ L +E QL LPDG+ NL YL+ L+
Sbjct: 100 LPNGVFDKLTNLKELVL---------VENQLQS----LPDGVFDKLTNLTYLYLYHNQLQ 146
Query: 437 TLPSNF--KPENLVELNLHFSKVEQLWEG 463
+LP K NL L+L ++++ L EG
Sbjct: 147 SLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 57 IWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGAN 111
+WG G GKTTLA I +++ E R ++ T G K + E +E A N
Sbjct: 55 LWGPPGTGKTTLAEVIARYANADVE--------RISAVTSGVKEIREAIERARQN 101
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 496 LLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPV 539
+L YTNFA +P + + L LS E +S ++ + R + P+
Sbjct: 666 VLGYTNFASIPQKMTHLPELDTLSSERARSFITWLRDSRPLSPI 709
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,279,960
Number of Sequences: 62578
Number of extensions: 823793
Number of successful extensions: 2154
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 2114
Number of HSP's gapped (non-prelim): 48
length of query: 658
length of database: 14,973,337
effective HSP length: 105
effective length of query: 553
effective length of database: 8,402,647
effective search space: 4646663791
effective search space used: 4646663791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)