Query 047214
Match_columns 658
No_of_seqs 277 out of 3356
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 08:52:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047214.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047214hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1E-74 2.2E-79 676.9 57.6 643 1-658 159-858 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 6.6E-61 1.4E-65 531.1 24.3 587 31-642 161-846 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 3.3E-36 7.2E-41 303.1 11.9 258 33-292 1-278 (287)
4 PLN00113 leucine-rich repeat r 99.9 1.2E-22 2.6E-27 238.9 20.2 280 361-656 70-366 (968)
5 KOG4194 Membrane glycoprotein 99.9 1.9E-23 4E-28 209.7 3.9 280 359-658 124-428 (873)
6 PLN00113 leucine-rich repeat r 99.9 8.3E-22 1.8E-26 231.8 18.6 243 414-658 204-464 (968)
7 KOG0444 Cytoskeletal regulator 99.9 2.9E-24 6.2E-29 216.8 -4.1 278 359-656 77-372 (1255)
8 PLN03210 Resistant to P. syrin 99.8 1.7E-19 3.7E-24 212.4 21.2 253 386-657 589-904 (1153)
9 KOG4194 Membrane glycoprotein 99.8 2.3E-21 4.9E-26 194.8 3.4 286 367-658 83-404 (873)
10 KOG0444 Cytoskeletal regulator 99.8 1.7E-21 3.7E-26 196.9 -5.2 260 380-658 49-351 (1255)
11 PRK15387 E3 ubiquitin-protein 99.8 1.7E-18 3.6E-23 189.4 16.8 233 386-658 222-457 (788)
12 PRK15387 E3 ubiquitin-protein 99.8 7E-18 1.5E-22 184.6 15.7 233 387-658 202-434 (788)
13 PRK15370 E3 ubiquitin-protein 99.7 7.5E-18 1.6E-22 185.6 13.3 219 424-658 200-427 (754)
14 KOG0472 Leucine-rich repeat pr 99.7 4.6E-20 9.9E-25 177.7 -5.2 253 385-658 182-540 (565)
15 KOG0472 Leucine-rich repeat pr 99.7 3.8E-20 8.1E-25 178.3 -9.4 193 380-591 108-308 (565)
16 PRK15370 E3 ubiquitin-protein 99.7 2.6E-16 5.6E-21 173.6 11.7 219 424-658 179-400 (754)
17 KOG0618 Serine/threonine phosp 99.6 1.6E-17 3.4E-22 176.3 -1.2 229 423-657 241-487 (1081)
18 KOG0618 Serine/threonine phosp 99.6 2E-16 4.4E-21 168.0 0.0 222 377-615 36-321 (1081)
19 PRK04841 transcriptional regul 99.6 1.6E-13 3.5E-18 160.9 21.1 289 23-332 9-335 (903)
20 KOG4237 Extracellular matrix p 99.5 4.1E-15 9E-20 143.7 -0.5 236 420-658 64-358 (498)
21 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.7E-20 130.5 -4.1 151 424-577 34-193 (264)
22 KOG0617 Ras suppressor protein 99.5 2E-15 4.4E-20 129.2 -3.8 165 434-621 22-189 (264)
23 COG2909 MalT ATP-dependent tra 99.4 5.6E-12 1.2E-16 134.4 16.0 292 22-333 13-342 (894)
24 COG3899 Predicted ATPase [Gene 99.4 6.5E-12 1.4E-16 141.7 14.6 297 29-332 1-389 (849)
25 cd00116 LRR_RI Leucine-rich re 99.3 1.7E-13 3.8E-18 140.3 1.0 101 557-658 193-319 (319)
26 PF01637 Arch_ATPase: Archaeal 99.3 6E-12 1.3E-16 122.6 9.5 188 30-222 1-233 (234)
27 PRK00411 cdc6 cell division co 99.3 3.6E-10 7.8E-15 119.1 19.9 277 24-311 26-358 (394)
28 TIGR00635 ruvB Holliday juncti 99.2 7E-11 1.5E-15 119.8 13.7 255 28-311 4-289 (305)
29 PRK00080 ruvB Holliday junctio 99.2 2.2E-10 4.7E-15 116.9 14.7 261 23-311 20-310 (328)
30 cd00116 LRR_RI Leucine-rich re 99.2 7.6E-12 1.7E-16 128.1 3.2 245 380-636 17-318 (319)
31 PF05729 NACHT: NACHT domain 99.1 5.5E-10 1.2E-14 102.3 12.5 139 53-192 1-163 (166)
32 KOG0532 Leucine-rich repeat (L 99.1 2.7E-12 5.9E-17 130.0 -3.2 199 429-635 56-270 (722)
33 TIGR02928 orc1/cdc6 family rep 99.1 3.5E-09 7.6E-14 110.4 19.8 276 26-311 13-350 (365)
34 KOG4237 Extracellular matrix p 99.1 6.7E-12 1.5E-16 121.8 -2.2 80 555-636 272-357 (498)
35 TIGR03015 pepcterm_ATPase puta 99.1 3.5E-09 7.7E-14 105.4 16.9 189 37-227 28-242 (269)
36 KOG0532 Leucine-rich repeat (L 99.0 1.2E-11 2.6E-16 125.4 -4.3 107 412-521 111-219 (722)
37 COG2256 MGS1 ATPase related to 99.0 2.7E-09 5.8E-14 105.0 11.8 174 24-218 20-207 (436)
38 COG4886 Leucine-rich repeat (L 99.0 4.4E-10 9.5E-15 118.6 5.2 180 415-597 109-294 (394)
39 KOG3207 Beta-tubulin folding c 99.0 9.5E-11 2.1E-15 115.5 0.1 206 352-570 113-339 (505)
40 PF14580 LRR_9: Leucine-rich r 99.0 4.1E-10 9E-15 101.6 4.1 93 433-528 7-102 (175)
41 KOG4658 Apoptotic ATPase [Sign 98.9 4.2E-10 9E-15 126.8 3.7 218 424-642 546-787 (889)
42 KOG1259 Nischarin, modulator o 98.9 1.9E-10 4.2E-15 107.7 0.6 125 445-592 284-411 (490)
43 PRK13342 recombination factor 98.9 9.2E-09 2E-13 108.2 12.8 179 23-223 7-196 (413)
44 PF14580 LRR_9: Leucine-rich r 98.9 9.2E-10 2E-14 99.3 4.1 122 385-521 18-148 (175)
45 PF13173 AAA_14: AAA domain 98.9 6.3E-09 1.4E-13 90.3 8.7 121 52-184 2-127 (128)
46 PRK07003 DNA polymerase III su 98.9 3.4E-08 7.5E-13 106.3 14.6 185 23-222 11-220 (830)
47 TIGR03420 DnaA_homol_Hda DnaA 98.8 3.5E-08 7.7E-13 95.4 12.8 174 27-225 14-203 (226)
48 PRK06893 DNA replication initi 98.8 6E-08 1.3E-12 93.3 13.6 151 52-224 39-204 (229)
49 COG3903 Predicted ATPase [Gene 98.8 1.6E-09 3.5E-14 107.3 2.5 278 50-332 12-317 (414)
50 KOG3207 Beta-tubulin folding c 98.8 6E-10 1.3E-14 110.0 -1.0 191 443-636 119-337 (505)
51 PRK14961 DNA polymerase III su 98.8 1.1E-07 2.5E-12 98.0 15.6 176 24-219 12-216 (363)
52 COG4886 Leucine-rich repeat (L 98.8 5.4E-09 1.2E-13 110.3 5.4 186 427-617 97-290 (394)
53 PRK14960 DNA polymerase III su 98.8 1.8E-07 3.9E-12 99.9 15.8 182 23-219 10-215 (702)
54 PRK14949 DNA polymerase III su 98.7 1.7E-07 3.6E-12 103.2 15.7 182 24-220 12-217 (944)
55 PLN03025 replication factor C 98.7 1.2E-07 2.7E-12 96.2 13.9 186 23-220 8-197 (319)
56 PRK12402 replication factor C 98.7 1.7E-07 3.7E-12 96.6 15.0 193 23-221 10-224 (337)
57 PRK12323 DNA polymerase III su 98.7 1.8E-07 3.9E-12 99.6 14.4 178 23-220 11-222 (700)
58 PRK04195 replication factor C 98.7 3.6E-07 7.8E-12 98.2 16.4 186 23-224 9-203 (482)
59 PRK14956 DNA polymerase III su 98.7 3.6E-07 7.8E-12 94.9 14.8 192 23-218 13-217 (484)
60 PRK07471 DNA polymerase III su 98.7 9.1E-07 2E-11 90.5 17.2 194 23-224 14-239 (365)
61 KOG1259 Nischarin, modulator o 98.7 2.1E-09 4.5E-14 100.9 -1.9 123 386-523 284-409 (490)
62 PRK00440 rfc replication facto 98.7 4.7E-07 1E-11 92.6 15.1 182 23-220 12-200 (319)
63 PRK14963 DNA polymerase III su 98.7 3.2E-07 7E-12 97.7 14.2 192 23-220 9-214 (504)
64 PRK14957 DNA polymerase III su 98.6 7.7E-07 1.7E-11 95.0 16.4 184 24-223 12-221 (546)
65 PTZ00112 origin recognition co 98.6 4.9E-07 1.1E-11 98.2 14.6 167 26-194 753-951 (1164)
66 PRK14962 DNA polymerase III su 98.6 5.5E-07 1.2E-11 95.2 14.9 183 23-225 9-221 (472)
67 PRK06645 DNA polymerase III su 98.6 7.4E-07 1.6E-11 94.5 15.8 185 23-218 16-224 (507)
68 PRK15386 type III secretion pr 98.6 1.4E-07 3.1E-12 95.5 9.5 62 465-530 49-111 (426)
69 PRK08691 DNA polymerase III su 98.6 4.4E-07 9.5E-12 97.9 13.4 183 23-220 11-217 (709)
70 TIGR02397 dnaX_nterm DNA polym 98.6 1.2E-06 2.7E-11 90.9 16.6 181 23-223 9-218 (355)
71 PRK07994 DNA polymerase III su 98.6 7.5E-07 1.6E-11 96.6 15.0 182 24-220 12-217 (647)
72 PRK14964 DNA polymerase III su 98.6 6.8E-07 1.5E-11 94.0 14.0 181 23-218 8-212 (491)
73 KOG2028 ATPase related to the 98.6 6.2E-07 1.3E-11 86.9 12.4 178 23-217 133-330 (554)
74 PRK09112 DNA polymerase III su 98.6 2.2E-06 4.7E-11 87.3 16.3 197 22-224 17-241 (351)
75 cd00009 AAA The AAA+ (ATPases 98.6 4.1E-07 8.8E-12 81.3 10.0 123 31-162 1-131 (151)
76 PRK05564 DNA polymerase III su 98.6 1.4E-06 3.1E-11 88.3 14.9 179 28-223 4-190 (313)
77 PRK14955 DNA polymerase III su 98.5 8.4E-07 1.8E-11 92.7 13.4 192 23-220 11-225 (397)
78 PRK14951 DNA polymerase III su 98.5 1.6E-06 3.4E-11 93.9 15.6 192 23-220 11-222 (618)
79 PRK07940 DNA polymerase III su 98.5 1.9E-06 4.2E-11 88.8 15.6 174 28-223 5-213 (394)
80 PRK13341 recombination factor 98.5 8.1E-07 1.8E-11 98.4 13.6 173 24-218 24-212 (725)
81 PRK08903 DnaA regulatory inact 98.5 1.1E-06 2.4E-11 84.8 13.1 175 25-227 15-203 (227)
82 PRK08084 DNA replication initi 98.5 1.7E-06 3.6E-11 83.6 14.1 171 28-223 23-209 (235)
83 PRK08727 hypothetical protein; 98.5 1.2E-06 2.7E-11 84.4 13.0 168 28-220 19-201 (233)
84 PRK05896 DNA polymerase III su 98.5 9.7E-07 2.1E-11 94.3 13.3 176 23-218 11-215 (605)
85 TIGR00678 holB DNA polymerase 98.5 3.7E-06 8E-11 78.5 15.5 160 39-218 3-186 (188)
86 KOG1909 Ran GTPase-activating 98.5 3.1E-08 6.7E-13 95.5 1.2 102 555-658 183-310 (382)
87 TIGR01242 26Sp45 26S proteasom 98.5 6.9E-07 1.5E-11 92.6 11.2 180 23-217 117-328 (364)
88 PRK14958 DNA polymerase III su 98.5 1.6E-06 3.4E-11 92.8 13.9 182 23-219 11-216 (509)
89 PRK14952 DNA polymerase III su 98.5 4.7E-06 1E-10 90.0 17.0 179 23-218 8-214 (584)
90 PRK14969 DNA polymerase III su 98.5 1.5E-06 3.2E-11 93.7 13.0 185 24-223 12-221 (527)
91 PRK05642 DNA replication initi 98.5 2.6E-06 5.6E-11 82.1 13.2 151 52-224 45-209 (234)
92 TIGR02639 ClpA ATP-dependent C 98.5 2.5E-06 5.5E-11 96.3 15.1 152 26-192 180-358 (731)
93 PRK07764 DNA polymerase III su 98.5 3.1E-06 6.7E-11 95.1 15.4 176 23-218 10-216 (824)
94 PF00308 Bac_DnaA: Bacterial d 98.4 2.3E-06 5E-11 81.5 12.2 180 29-221 10-206 (219)
95 KOG2120 SCF ubiquitin ligase, 98.4 7.3E-09 1.6E-13 97.3 -4.7 170 445-636 185-374 (419)
96 TIGR03345 VI_ClpV1 type VI sec 98.4 3.9E-06 8.5E-11 95.4 16.1 182 25-217 184-390 (852)
97 KOG2982 Uncharacterized conser 98.4 1.2E-07 2.6E-12 89.3 3.3 178 443-621 69-266 (418)
98 PRK14970 DNA polymerase III su 98.4 4.2E-06 9.2E-11 87.1 15.2 182 23-218 12-204 (367)
99 PF05496 RuvB_N: Holliday junc 98.4 1.9E-06 4.2E-11 79.5 10.9 178 23-222 19-220 (233)
100 PRK15386 type III secretion pr 98.4 5.4E-07 1.2E-11 91.4 7.8 155 486-656 48-210 (426)
101 KOG0989 Replication factor C, 98.4 1.4E-06 3.1E-11 82.9 9.7 183 23-218 31-225 (346)
102 KOG0531 Protein phosphatase 1, 98.4 4.1E-08 8.8E-13 103.8 -0.6 191 384-591 70-266 (414)
103 PRK09111 DNA polymerase III su 98.4 7E-06 1.5E-10 89.2 15.8 194 23-221 19-231 (598)
104 KOG0531 Protein phosphatase 1, 98.4 4.3E-08 9.3E-13 103.6 -1.2 217 380-615 89-316 (414)
105 PRK03992 proteasome-activating 98.4 2.5E-06 5.5E-11 88.8 11.8 179 24-217 127-337 (389)
106 PRK09087 hypothetical protein; 98.4 3.5E-06 7.6E-11 80.5 11.9 140 51-223 43-195 (226)
107 PRK14954 DNA polymerase III su 98.4 9.9E-06 2.1E-10 88.2 16.6 191 23-218 11-223 (620)
108 PRK14959 DNA polymerase III su 98.4 4.3E-06 9.2E-11 90.0 13.4 183 23-225 11-223 (624)
109 PRK06305 DNA polymerase III su 98.4 7.3E-06 1.6E-10 86.6 14.7 177 24-218 13-217 (451)
110 PRK07133 DNA polymerase III su 98.3 8.6E-06 1.9E-10 89.0 15.2 190 23-218 13-214 (725)
111 PTZ00202 tuzin; Provisional 98.3 1.6E-05 3.4E-10 80.4 15.5 164 22-192 256-434 (550)
112 PRK14953 DNA polymerase III su 98.3 1.2E-05 2.6E-10 85.6 15.7 193 24-221 12-218 (486)
113 PHA02544 44 clamp loader, smal 98.3 1.1E-05 2.3E-10 82.4 14.4 150 23-190 16-171 (316)
114 CHL00095 clpC Clp protease ATP 98.3 4.8E-06 1E-10 95.3 12.9 154 27-191 178-353 (821)
115 PF13401 AAA_22: AAA domain; P 98.3 1.6E-06 3.5E-11 75.6 6.9 107 51-160 3-125 (131)
116 COG1474 CDC6 Cdc6-related prot 98.3 2.9E-05 6.3E-10 79.4 16.8 196 26-224 15-239 (366)
117 PF13855 LRR_8: Leucine rich r 98.3 8.5E-07 1.8E-11 65.5 4.1 55 424-478 2-59 (61)
118 PF14516 AAA_35: AAA-like doma 98.3 5.1E-05 1.1E-09 77.3 18.4 196 24-230 7-246 (331)
119 PRK11034 clpA ATP-dependent Cl 98.3 3.8E-05 8.1E-10 85.8 18.7 149 28-191 186-361 (758)
120 PRK08451 DNA polymerase III su 98.3 1.9E-05 4.2E-10 84.0 15.4 184 23-221 9-216 (535)
121 PRK06620 hypothetical protein; 98.3 1.5E-05 3.3E-10 75.4 13.3 161 26-221 15-187 (214)
122 PRK10865 protein disaggregatio 98.3 1.8E-05 4E-10 90.4 16.1 152 26-191 176-353 (857)
123 PRK14087 dnaA chromosomal repl 98.2 1.2E-05 2.7E-10 84.9 13.2 165 52-225 141-321 (450)
124 PRK14950 DNA polymerase III su 98.2 3E-05 6.4E-10 85.2 16.4 180 23-222 11-220 (585)
125 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.6E-11 64.0 4.6 33 446-478 2-35 (61)
126 KOG2120 SCF ubiquitin ligase, 98.2 2.6E-08 5.6E-13 93.7 -6.3 172 423-615 185-374 (419)
127 PRK06647 DNA polymerase III su 98.2 3.7E-05 7.9E-10 83.3 16.5 189 23-220 11-217 (563)
128 PRK05707 DNA polymerase III su 98.2 2.7E-05 5.9E-10 78.6 14.4 155 50-223 20-203 (328)
129 TIGR02903 spore_lon_C ATP-depe 98.2 1.9E-05 4.2E-10 86.8 14.3 50 24-76 150-199 (615)
130 PRK05563 DNA polymerase III su 98.2 3E-05 6.5E-10 84.3 15.6 191 23-218 11-215 (559)
131 KOG0991 Replication factor C, 98.2 8.5E-06 1.8E-10 74.3 9.3 212 23-245 22-267 (333)
132 PRK14971 DNA polymerase III su 98.2 3.1E-05 6.7E-10 84.9 15.6 180 23-219 12-218 (614)
133 TIGR03346 chaperone_ClpB ATP-d 98.2 2.5E-05 5.5E-10 89.6 15.4 152 26-191 171-348 (852)
134 PRK14088 dnaA chromosomal repl 98.2 4.6E-05 9.9E-10 80.6 15.9 159 52-221 130-303 (440)
135 PRK14965 DNA polymerase III su 98.2 2.1E-05 4.5E-10 85.9 13.7 195 23-223 11-221 (576)
136 PF13191 AAA_16: AAA ATPase do 98.2 1.9E-06 4.1E-11 80.3 4.7 51 29-79 1-51 (185)
137 PRK14948 DNA polymerase III su 98.2 5.5E-05 1.2E-09 82.9 16.6 192 24-222 12-221 (620)
138 PRK00149 dnaA chromosomal repl 98.2 2.6E-05 5.7E-10 83.2 13.9 157 52-221 148-320 (450)
139 TIGR00362 DnaA chromosomal rep 98.2 3.1E-05 6.8E-10 81.6 14.2 157 52-221 136-308 (405)
140 PLN03150 hypothetical protein; 98.1 3.8E-06 8.2E-11 93.1 7.5 78 425-502 420-502 (623)
141 TIGR02881 spore_V_K stage V sp 98.1 2.2E-05 4.7E-10 77.4 12.0 155 29-194 7-193 (261)
142 COG1373 Predicted ATPase (AAA+ 98.1 3.5E-05 7.5E-10 80.3 13.7 163 35-223 24-192 (398)
143 PRK07399 DNA polymerase III su 98.1 5.2E-05 1.1E-09 76.2 14.2 185 28-222 4-220 (314)
144 PTZ00454 26S protease regulato 98.1 2.9E-05 6.4E-10 80.4 12.6 180 23-217 140-351 (398)
145 TIGR02880 cbbX_cfxQ probable R 98.1 6.9E-05 1.5E-09 74.5 14.6 154 29-193 23-209 (284)
146 PRK12422 chromosomal replicati 98.1 8.8E-05 1.9E-09 78.2 15.0 154 52-217 141-307 (445)
147 CHL00181 cbbX CbbX; Provisiona 98.0 0.00025 5.5E-09 70.4 17.4 155 29-194 24-211 (287)
148 PTZ00361 26 proteosome regulat 98.0 2E-05 4.4E-10 82.2 9.9 178 25-217 180-389 (438)
149 KOG2982 Uncharacterized conser 98.0 4.8E-07 1E-11 85.3 -2.2 195 417-611 65-286 (418)
150 PLN03150 hypothetical protein; 98.0 1.1E-05 2.3E-10 89.5 7.7 104 446-549 419-528 (623)
151 KOG2227 Pre-initiation complex 98.0 0.00027 5.9E-09 71.6 16.3 205 9-218 135-363 (529)
152 KOG4341 F-box protein containi 98.0 1E-07 2.2E-12 94.0 -8.0 216 424-640 191-441 (483)
153 KOG4341 F-box protein containi 98.0 2.9E-07 6.2E-12 90.9 -5.0 213 443-656 188-436 (483)
154 CHL00176 ftsH cell division pr 98.0 7E-05 1.5E-09 82.2 12.7 173 28-215 183-386 (638)
155 TIGR03689 pup_AAA proteasome A 98.0 9.4E-05 2E-09 78.4 13.1 163 23-192 177-378 (512)
156 TIGR00602 rad24 checkpoint pro 98.0 6.7E-05 1.5E-09 81.7 12.1 193 23-218 79-318 (637)
157 TIGR03345 VI_ClpV1 type VI sec 97.9 9.3E-05 2E-09 84.4 13.8 133 27-160 565-718 (852)
158 KOG1909 Ran GTPase-activating 97.9 4.9E-06 1.1E-10 80.6 3.0 208 443-658 28-282 (382)
159 COG1222 RPT1 ATP-dependent 26S 97.9 8.5E-05 1.8E-09 72.7 11.4 184 28-227 151-371 (406)
160 PRK14086 dnaA chromosomal repl 97.9 0.00022 4.7E-09 76.8 15.3 156 52-220 314-485 (617)
161 TIGR01241 FtsH_fam ATP-depende 97.9 8.6E-05 1.9E-09 80.3 12.6 177 26-217 53-260 (495)
162 PF05621 TniB: Bacterial TniB 97.9 0.00014 3E-09 70.7 12.0 196 26-221 32-259 (302)
163 TIGR02639 ClpA ATP-dependent C 97.9 0.00014 2.9E-09 82.5 13.5 116 27-146 453-578 (731)
164 COG0593 DnaA ATPase involved i 97.9 0.00019 4.1E-09 73.3 13.0 134 50-195 111-260 (408)
165 TIGR03346 chaperone_ClpB ATP-d 97.8 0.0002 4.4E-09 82.4 14.2 130 27-160 564-717 (852)
166 PRK06871 DNA polymerase III su 97.8 0.00074 1.6E-08 67.8 15.9 172 38-219 12-199 (325)
167 PRK08116 hypothetical protein; 97.8 0.00011 2.3E-09 72.3 9.7 102 53-161 115-221 (268)
168 PRK08769 DNA polymerase III su 97.8 0.00054 1.2E-08 68.6 14.8 166 37-224 13-209 (319)
169 PF05673 DUF815: Protein of un 97.8 0.00012 2.5E-09 69.0 9.3 120 23-161 22-150 (249)
170 PF13177 DNA_pol3_delta2: DNA 97.8 0.00014 3.1E-09 65.6 9.7 134 32-180 1-162 (162)
171 PRK08058 DNA polymerase III su 97.8 0.0007 1.5E-08 68.9 15.4 145 30-191 7-181 (329)
172 PF00004 AAA: ATPase family as 97.8 0.0002 4.4E-09 62.3 9.9 23 55-77 1-23 (132)
173 COG1223 Predicted ATPase (AAA+ 97.8 0.00026 5.6E-09 66.0 10.7 174 25-217 118-319 (368)
174 PRK07993 DNA polymerase III su 97.8 0.00079 1.7E-08 68.3 15.3 162 37-221 11-202 (334)
175 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00016 3.4E-09 75.4 10.2 175 28-217 190-396 (802)
176 COG2255 RuvB Holliday junction 97.7 0.0005 1.1E-08 65.3 12.6 261 23-311 21-311 (332)
177 PF12799 LRR_4: Leucine Rich r 97.7 3.7E-05 8E-10 51.9 3.8 33 446-478 2-34 (44)
178 PRK08181 transposase; Validate 97.7 0.00011 2.3E-09 71.8 8.5 100 52-161 106-209 (269)
179 smart00382 AAA ATPases associa 97.7 0.0002 4.2E-09 63.2 9.7 85 52-137 2-92 (148)
180 COG2812 DnaX DNA polymerase II 97.7 0.00012 2.7E-09 76.9 9.3 190 24-217 12-214 (515)
181 TIGR01243 CDC48 AAA family ATP 97.7 0.00028 6.1E-09 80.2 12.7 176 27-217 452-657 (733)
182 PRK10865 protein disaggregatio 97.7 0.00035 7.6E-09 80.1 13.1 115 27-145 567-694 (857)
183 PRK13531 regulatory ATPase Rav 97.7 0.00047 1E-08 71.8 12.7 47 27-78 19-65 (498)
184 COG0542 clpA ATP-binding subun 97.7 0.00011 2.5E-09 80.4 8.4 117 27-147 490-619 (786)
185 cd01128 rho_factor Transcripti 97.7 0.00012 2.6E-09 70.6 7.6 41 51-91 15-56 (249)
186 PRK11034 clpA ATP-dependent Cl 97.7 0.00057 1.2E-08 76.6 13.9 112 27-145 457-581 (758)
187 PRK10536 hypothetical protein; 97.7 0.00029 6.4E-09 67.2 9.9 124 28-160 55-212 (262)
188 TIGR01243 CDC48 AAA family ATP 97.6 0.0003 6.4E-09 80.0 11.6 177 27-218 177-382 (733)
189 PRK09376 rho transcription ter 97.6 9.1E-05 2E-09 74.7 6.4 83 51-136 168-269 (416)
190 KOG0741 AAA+-type ATPase [Post 97.6 0.00083 1.8E-08 69.0 13.1 150 50-213 536-704 (744)
191 CHL00195 ycf46 Ycf46; Provisio 97.6 0.00055 1.2E-08 72.8 12.5 177 28-217 228-429 (489)
192 CHL00095 clpC Clp protease ATP 97.6 0.00025 5.3E-09 81.4 10.5 119 27-146 508-636 (821)
193 PF10443 RNA12: RNA12 protein; 97.6 0.0027 5.9E-08 64.7 16.4 103 124-230 149-285 (431)
194 KOG2543 Origin recognition com 97.6 0.00022 4.7E-09 70.4 8.1 163 26-192 4-193 (438)
195 PF02562 PhoH: PhoH-like prote 97.6 0.00026 5.6E-09 65.7 8.2 120 33-160 5-155 (205)
196 COG0470 HolB ATPase involved i 97.6 0.00078 1.7E-08 69.0 12.8 149 29-185 2-174 (325)
197 PRK06090 DNA polymerase III su 97.6 0.0022 4.8E-08 64.2 15.1 162 38-224 13-202 (319)
198 PF01695 IstB_IS21: IstB-like 97.5 0.00015 3.2E-09 66.5 6.0 74 51-134 46-119 (178)
199 COG0466 Lon ATP-dependent Lon 97.5 0.00069 1.5E-08 72.5 11.5 182 2-192 288-508 (782)
200 PF12799 LRR_4: Leucine Rich r 97.5 8.3E-05 1.8E-09 50.2 3.0 38 424-461 2-40 (44)
201 KOG1644 U2-associated snRNP A' 97.5 0.00018 4E-09 64.6 5.9 76 446-523 43-123 (233)
202 KOG1644 U2-associated snRNP A' 97.5 0.00017 3.8E-09 64.8 5.6 105 418-522 37-149 (233)
203 PF03215 Rad17: Rad17 cell cyc 97.5 0.0011 2.3E-08 71.1 12.5 63 23-87 14-78 (519)
204 PHA00729 NTP-binding motif con 97.5 0.0012 2.6E-08 62.1 11.2 28 50-77 15-42 (226)
205 COG3267 ExeA Type II secretory 97.5 0.0026 5.6E-08 59.8 12.9 175 50-225 49-247 (269)
206 PRK10787 DNA-binding ATP-depen 97.5 0.00044 9.6E-09 78.1 9.5 184 2-192 287-506 (784)
207 TIGR00763 lon ATP-dependent pr 97.5 0.00047 1E-08 78.6 9.9 158 28-192 320-505 (775)
208 TIGR02640 gas_vesic_GvpN gas v 97.4 0.0013 2.8E-08 64.7 11.6 25 53-77 22-46 (262)
209 PRK09183 transposase/IS protei 97.4 0.00038 8.2E-09 68.1 7.6 35 52-86 102-136 (259)
210 KOG1859 Leucine-rich repeat pr 97.4 1.8E-06 4E-11 90.9 -9.0 127 359-506 163-295 (1096)
211 PRK07952 DNA replication prote 97.4 0.00059 1.3E-08 65.6 8.6 115 37-160 85-204 (244)
212 PRK06526 transposase; Provisio 97.4 0.00024 5.2E-09 69.0 6.0 34 52-85 98-131 (254)
213 TIGR02902 spore_lonB ATP-depen 97.4 0.00098 2.1E-08 72.3 11.3 50 24-76 61-110 (531)
214 KOG1859 Leucine-rich repeat pr 97.4 4.9E-06 1.1E-10 87.8 -6.1 55 424-478 233-289 (1096)
215 PF04665 Pox_A32: Poxvirus A32 97.4 0.00037 8E-09 66.2 6.8 36 52-87 13-48 (241)
216 KOG2035 Replication factor C, 97.4 0.0028 6E-08 60.0 12.3 214 26-244 11-260 (351)
217 PRK11331 5-methylcytosine-spec 97.4 0.00031 6.7E-09 72.5 6.4 101 28-136 175-285 (459)
218 PLN00020 ribulose bisphosphate 97.4 0.0018 3.8E-08 64.8 11.4 151 50-218 146-333 (413)
219 KOG0736 Peroxisome assembly fa 97.4 0.0026 5.6E-08 68.5 13.2 196 7-217 651-879 (953)
220 KOG4579 Leucine-rich repeat (L 97.4 5.2E-06 1.1E-10 69.4 -5.2 84 424-508 54-141 (177)
221 KOG0730 AAA+-type ATPase [Post 97.4 0.00082 1.8E-08 71.2 9.5 175 28-217 434-637 (693)
222 KOG0744 AAA+-type ATPase [Post 97.4 0.0013 2.9E-08 63.4 9.9 76 52-134 177-261 (423)
223 KOG3665 ZYG-1-like serine/thre 97.3 5.7E-05 1.2E-09 83.7 0.7 107 416-523 141-260 (699)
224 cd01131 PilT Pilus retraction 97.3 0.00087 1.9E-08 62.9 8.6 111 53-166 2-114 (198)
225 PRK12377 putative replication 97.3 0.00063 1.4E-08 65.6 7.7 100 52-160 101-205 (248)
226 PRK06964 DNA polymerase III su 97.3 0.0047 1E-07 62.5 14.2 92 122-223 131-225 (342)
227 KOG0735 AAA+-type ATPase [Post 97.3 0.0041 8.8E-08 66.4 14.0 161 51-222 430-615 (952)
228 COG0542 clpA ATP-binding subun 97.3 0.0017 3.7E-08 71.5 11.5 151 27-191 169-345 (786)
229 PRK08939 primosomal protein Dn 97.3 0.00085 1.8E-08 67.1 8.5 119 32-160 135-260 (306)
230 PF07728 AAA_5: AAA domain (dy 97.3 0.00036 7.8E-09 61.4 5.3 22 55-76 2-23 (139)
231 KOG1970 Checkpoint RAD17-RFC c 97.3 0.0049 1.1E-07 64.0 13.6 182 33-217 87-309 (634)
232 PRK08699 DNA polymerase III su 97.3 0.004 8.6E-08 63.0 13.0 88 122-219 112-202 (325)
233 TIGR00767 rho transcription te 97.2 0.00096 2.1E-08 67.8 7.9 41 51-91 167-208 (415)
234 PF14532 Sigma54_activ_2: Sigm 97.2 0.00036 7.7E-09 61.3 4.3 107 31-161 1-110 (138)
235 PRK04132 replication factor C 97.2 0.0051 1.1E-07 69.2 14.1 154 57-221 569-729 (846)
236 COG1484 DnaC DNA replication p 97.2 0.0011 2.4E-08 64.5 7.9 37 51-87 104-140 (254)
237 KOG3665 ZYG-1-like serine/thre 97.2 0.00019 4.1E-09 79.6 2.7 33 490-522 122-157 (699)
238 PRK06921 hypothetical protein; 97.2 0.00094 2E-08 65.5 7.3 37 51-87 116-153 (266)
239 PF00158 Sigma54_activat: Sigm 97.2 0.0005 1.1E-08 62.3 4.8 127 30-161 1-144 (168)
240 COG5238 RNA1 Ran GTPase-activa 97.2 0.00013 2.7E-09 68.5 0.8 178 464-658 88-315 (388)
241 PRK06696 uridine kinase; Valid 97.1 0.00071 1.5E-08 64.9 5.8 47 33-79 3-49 (223)
242 PRK08118 topology modulation p 97.1 0.00066 1.4E-08 61.7 5.3 32 54-85 3-37 (167)
243 cd00561 CobA_CobO_BtuR ATP:cor 97.1 0.0024 5.2E-08 56.7 8.6 110 53-162 3-139 (159)
244 PRK06835 DNA replication prote 97.1 0.00089 1.9E-08 67.5 6.5 101 53-161 184-289 (329)
245 COG1875 NYN ribonuclease and A 97.1 0.003 6.6E-08 62.2 9.6 124 32-159 228-386 (436)
246 TIGR02974 phageshock_pspF psp 97.1 0.0074 1.6E-07 61.4 12.7 45 30-75 1-45 (329)
247 KOG2228 Origin recognition com 97.1 0.0077 1.7E-07 58.8 11.8 164 27-192 23-219 (408)
248 PF13604 AAA_30: AAA domain; P 97.1 0.00078 1.7E-08 63.0 5.0 99 50-159 16-129 (196)
249 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00062 1.3E-08 68.4 4.4 50 29-78 52-104 (361)
250 KOG4579 Leucine-rich repeat (L 97.0 3.9E-05 8.5E-10 64.3 -3.6 99 424-523 28-133 (177)
251 PF13207 AAA_17: AAA domain; P 97.0 0.0006 1.3E-08 58.4 3.4 23 54-76 1-23 (121)
252 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0065 1.4E-07 63.8 11.3 130 52-193 545-693 (802)
253 KOG0734 AAA+-type ATPase conta 97.0 0.0078 1.7E-07 62.2 11.6 148 29-192 305-484 (752)
254 PRK10733 hflB ATP-dependent me 97.0 0.0043 9.4E-08 69.1 10.9 148 53-215 186-355 (644)
255 KOG0731 AAA+-type ATPase conta 97.0 0.0055 1.2E-07 67.1 11.3 181 26-220 309-521 (774)
256 COG4088 Predicted nucleotide k 97.0 0.0044 9.6E-08 56.0 8.6 132 53-190 2-137 (261)
257 KOG0735 AAA+-type ATPase [Post 97.0 0.0054 1.2E-07 65.5 10.6 153 52-219 701-872 (952)
258 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0024 5.2E-08 62.0 7.3 42 51-92 68-109 (274)
259 PF00448 SRP54: SRP54-type pro 96.9 0.0013 2.8E-08 61.3 5.3 79 52-132 1-92 (196)
260 KOG2123 Uncharacterized conser 96.9 4E-05 8.7E-10 72.0 -4.7 97 385-496 18-123 (388)
261 PF07724 AAA_2: AAA domain (Cd 96.9 0.0021 4.5E-08 58.4 6.1 78 52-137 3-82 (171)
262 TIGR01420 pilT_fam pilus retra 96.9 0.0043 9.3E-08 63.6 9.1 111 51-164 121-233 (343)
263 TIGR02237 recomb_radB DNA repa 96.9 0.0033 7.2E-08 59.7 7.8 38 50-87 10-47 (209)
264 PRK14974 cell division protein 96.9 0.015 3.3E-07 58.7 12.8 29 51-79 139-167 (336)
265 PRK07667 uridine kinase; Provi 96.9 0.0023 4.9E-08 59.8 6.4 42 37-79 3-44 (193)
266 KOG2004 Mitochondrial ATP-depe 96.9 0.006 1.3E-07 65.3 10.0 157 26-192 409-596 (906)
267 COG2607 Predicted ATPase (AAA+ 96.9 0.0066 1.4E-07 56.4 9.0 120 23-161 55-183 (287)
268 PRK09361 radB DNA repair and r 96.9 0.0046 9.9E-08 59.5 8.7 49 38-87 10-58 (225)
269 TIGR01817 nifA Nif-specific re 96.8 0.0057 1.2E-07 67.0 10.3 51 25-76 193-243 (534)
270 cd01394 radB RadB. The archaea 96.8 0.0049 1.1E-07 58.9 8.6 49 38-87 6-54 (218)
271 PRK11889 flhF flagellar biosyn 96.8 0.013 2.8E-07 59.6 11.5 37 51-87 240-276 (436)
272 cd01120 RecA-like_NTPases RecA 96.8 0.0053 1.1E-07 55.5 8.4 34 54-87 1-34 (165)
273 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0042 9.1E-08 60.9 8.0 110 51-165 79-188 (264)
274 COG0464 SpoVK ATPases of the A 96.8 0.0062 1.3E-07 66.2 10.1 153 50-215 274-445 (494)
275 PRK15429 formate hydrogenlyase 96.8 0.0065 1.4E-07 68.7 10.3 128 28-161 376-521 (686)
276 KOG1514 Origin recognition com 96.8 0.058 1.3E-06 58.0 16.3 176 9-194 381-591 (767)
277 PRK04296 thymidine kinase; Pro 96.8 0.0048 1E-07 57.4 7.6 104 53-161 3-116 (190)
278 PRK07261 topology modulation p 96.7 0.0031 6.7E-08 57.6 6.0 23 54-76 2-24 (171)
279 KOG0737 AAA+-type ATPase [Post 96.7 0.0075 1.6E-07 59.7 8.8 55 28-82 92-157 (386)
280 PRK11608 pspF phage shock prot 96.7 0.0035 7.5E-08 63.8 6.8 47 28-75 6-52 (326)
281 TIGR00708 cobA cob(I)alamin ad 96.6 0.014 3.1E-07 52.4 9.5 111 52-162 5-141 (173)
282 cd01393 recA_like RecA is a b 96.6 0.0077 1.7E-07 58.0 8.5 49 38-87 6-60 (226)
283 PRK05022 anaerobic nitric oxid 96.6 0.0081 1.7E-07 65.3 9.4 51 26-77 185-235 (509)
284 COG1618 Predicted nucleotide k 96.6 0.0023 4.9E-08 55.6 4.0 41 53-93 6-48 (179)
285 PF03308 ArgK: ArgK protein; 96.6 0.0049 1.1E-07 58.5 6.5 67 37-105 15-81 (266)
286 cd00544 CobU Adenosylcobinamid 96.6 0.0051 1.1E-07 55.7 6.4 74 55-132 2-82 (169)
287 PF01583 APS_kinase: Adenylyls 96.6 0.0034 7.4E-08 55.4 5.1 36 52-87 2-37 (156)
288 cd01123 Rad51_DMC1_radA Rad51_ 96.6 0.0075 1.6E-07 58.4 8.1 48 39-87 7-60 (235)
289 PF08433 KTI12: Chromatin asso 96.5 0.0069 1.5E-07 59.4 7.3 104 53-164 2-112 (270)
290 PRK05986 cob(I)alamin adenolsy 96.5 0.016 3.4E-07 53.0 9.1 112 51-162 21-159 (191)
291 PRK15455 PrkA family serine pr 96.5 0.0028 6E-08 67.2 4.3 51 29-79 77-130 (644)
292 PRK12724 flagellar biosynthesi 96.5 0.029 6.3E-07 57.9 11.5 25 52-76 223-247 (432)
293 PRK00771 signal recognition pa 96.5 0.039 8.4E-07 57.9 12.8 36 51-86 94-129 (437)
294 PF13671 AAA_33: AAA domain; P 96.5 0.0089 1.9E-07 52.8 7.1 24 54-77 1-24 (143)
295 PRK12608 transcription termina 96.5 0.0089 1.9E-07 60.5 7.7 40 39-80 122-161 (380)
296 PF00437 T2SE: Type II/IV secr 96.5 0.0063 1.4E-07 60.4 6.7 127 28-162 104-233 (270)
297 COG1703 ArgK Putative periplas 96.4 0.0056 1.2E-07 59.0 5.8 67 38-106 38-104 (323)
298 KOG0743 AAA+-type ATPase [Post 96.4 0.044 9.5E-07 56.1 12.3 148 53-227 236-413 (457)
299 KOG2170 ATPase of the AAA+ sup 96.4 0.025 5.5E-07 54.5 9.9 100 30-136 84-191 (344)
300 cd01121 Sms Sms (bacterial rad 96.4 0.0096 2.1E-07 61.3 7.7 50 37-87 68-117 (372)
301 COG0465 HflB ATP-dependent Zn 96.4 0.026 5.7E-07 60.6 11.0 178 26-218 148-356 (596)
302 PF13238 AAA_18: AAA domain; P 96.4 0.0028 6E-08 54.8 3.2 22 55-76 1-22 (129)
303 KOG1051 Chaperone HSP104 and r 96.4 0.015 3.3E-07 65.2 9.4 107 27-136 561-673 (898)
304 PRK10867 signal recognition pa 96.4 0.026 5.6E-07 59.1 10.7 38 50-87 98-136 (433)
305 PRK10463 hydrogenase nickel in 96.3 0.017 3.8E-07 56.5 8.8 46 39-87 94-139 (290)
306 PRK13695 putative NTPase; Prov 96.3 0.04 8.6E-07 50.5 10.7 23 55-77 3-25 (174)
307 PTZ00494 tuzin-like protein; P 96.3 0.095 2.1E-06 53.6 13.8 164 22-192 365-544 (664)
308 PRK05541 adenylylsulfate kinas 96.3 0.005 1.1E-07 56.6 4.7 38 50-87 5-42 (176)
309 KOG0739 AAA+-type ATPase [Post 96.3 0.037 7.9E-07 53.1 10.2 174 28-217 133-335 (439)
310 PRK14722 flhF flagellar biosyn 96.3 0.027 5.9E-07 57.6 10.2 29 51-79 136-164 (374)
311 PRK07132 DNA polymerase III su 96.3 0.097 2.1E-06 52.1 13.8 168 37-223 5-185 (299)
312 KOG0727 26S proteasome regulat 96.2 0.014 3E-07 54.5 6.9 149 28-192 155-339 (408)
313 PF06309 Torsin: Torsin; Inte 96.2 0.0079 1.7E-07 50.5 4.9 47 29-75 26-76 (127)
314 PF00910 RNA_helicase: RNA hel 96.2 0.0028 6E-08 52.8 2.2 26 55-80 1-26 (107)
315 COG1066 Sms Predicted ATP-depe 96.2 0.018 3.9E-07 58.1 8.1 91 37-132 79-177 (456)
316 COG2884 FtsE Predicted ATPase 96.2 0.02 4.4E-07 51.4 7.6 50 116-167 148-203 (223)
317 TIGR00064 ftsY signal recognit 96.2 0.015 3.3E-07 57.3 7.6 38 50-87 70-107 (272)
318 COG4608 AppF ABC-type oligopep 96.2 0.02 4.3E-07 54.8 8.1 117 50-167 37-176 (268)
319 TIGR00959 ffh signal recogniti 96.2 0.067 1.4E-06 56.1 12.7 27 51-77 98-124 (428)
320 KOG2123 Uncharacterized conser 96.2 0.00026 5.6E-09 66.7 -4.6 93 424-518 20-122 (388)
321 TIGR00416 sms DNA repair prote 96.2 0.014 3E-07 62.0 7.7 50 37-87 80-129 (454)
322 PRK11388 DNA-binding transcrip 96.2 0.084 1.8E-06 59.4 14.4 49 27-76 324-372 (638)
323 COG0572 Udk Uridine kinase [Nu 96.2 0.007 1.5E-07 56.2 4.7 30 50-79 6-35 (218)
324 PF00485 PRK: Phosphoribulokin 96.1 0.0049 1.1E-07 57.7 3.7 26 54-79 1-26 (194)
325 TIGR02858 spore_III_AA stage I 96.1 0.06 1.3E-06 52.8 11.3 113 50-166 109-234 (270)
326 TIGR02238 recomb_DMC1 meiotic 96.1 0.024 5.2E-07 57.0 8.7 60 37-98 82-147 (313)
327 PRK04301 radA DNA repair and r 96.1 0.019 4.2E-07 58.2 8.1 57 38-96 89-151 (317)
328 KOG2739 Leucine-rich acidic nu 96.1 0.0036 7.8E-08 59.0 2.5 99 534-636 41-154 (260)
329 PRK06547 hypothetical protein; 96.1 0.0088 1.9E-07 54.4 5.0 27 50-76 13-39 (172)
330 PRK12723 flagellar biosynthesi 96.1 0.088 1.9E-06 54.4 12.8 27 51-77 173-199 (388)
331 TIGR00150 HI0065_YjeE ATPase, 96.1 0.0077 1.7E-07 51.7 4.3 40 36-76 7-46 (133)
332 cd02019 NK Nucleoside/nucleoti 96.1 0.0055 1.2E-07 46.2 3.0 23 54-76 1-23 (69)
333 PF07726 AAA_3: ATPase family 96.1 0.0038 8.2E-08 52.6 2.2 28 55-82 2-29 (131)
334 PTZ00301 uridine kinase; Provi 96.1 0.0056 1.2E-07 57.6 3.7 28 52-79 3-30 (210)
335 KOG0738 AAA+-type ATPase [Post 96.0 0.034 7.3E-07 55.5 9.0 54 25-78 209-271 (491)
336 cd01130 VirB11-like_ATPase Typ 96.0 0.017 3.6E-07 53.6 6.6 90 51-141 24-118 (186)
337 CHL00206 ycf2 Ycf2; Provisiona 96.0 0.037 8.1E-07 66.4 10.7 28 50-77 1628-1655(2281)
338 cd00983 recA RecA is a bacter 96.0 0.022 4.9E-07 57.0 7.7 50 37-87 40-90 (325)
339 cd03223 ABCD_peroxisomal_ALDP 96.0 0.082 1.8E-06 48.0 10.9 110 51-164 26-151 (166)
340 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.031 6.6E-07 49.4 7.8 105 51-166 25-132 (144)
341 KOG2739 Leucine-rich acidic nu 96.0 0.0037 8E-08 58.9 1.9 32 424-455 44-75 (260)
342 PRK05917 DNA polymerase III su 96.0 0.16 3.4E-06 50.0 13.3 128 37-179 6-154 (290)
343 TIGR02012 tigrfam_recA protein 95.9 0.021 4.6E-07 57.1 7.3 50 37-87 40-90 (321)
344 cd03214 ABC_Iron-Siderophores_ 95.9 0.041 8.8E-07 50.8 8.9 115 51-166 24-163 (180)
345 PRK08233 hypothetical protein; 95.9 0.0068 1.5E-07 56.1 3.7 26 52-77 3-28 (182)
346 TIGR02524 dot_icm_DotB Dot/Icm 95.9 0.024 5.3E-07 58.1 7.9 108 51-162 133-248 (358)
347 PF06068 TIP49: TIP49 C-termin 95.9 0.019 4.2E-07 57.4 6.7 59 26-85 22-83 (398)
348 cd03238 ABC_UvrA The excision 95.9 0.063 1.4E-06 49.0 9.7 24 51-74 20-43 (176)
349 COG1224 TIP49 DNA helicase TIP 95.9 0.024 5.2E-07 55.9 7.2 56 25-81 36-94 (450)
350 COG0703 AroK Shikimate kinase 95.9 0.086 1.9E-06 47.2 10.1 28 53-80 3-30 (172)
351 KOG0728 26S proteasome regulat 95.9 0.087 1.9E-06 49.2 10.4 145 32-192 151-331 (404)
352 TIGR00390 hslU ATP-dependent p 95.9 0.014 3.1E-07 59.9 5.8 53 28-80 12-75 (441)
353 PRK06762 hypothetical protein; 95.9 0.0079 1.7E-07 54.7 3.7 25 52-76 2-26 (166)
354 PF12775 AAA_7: P-loop contain 95.9 0.025 5.4E-07 55.7 7.4 35 39-77 24-58 (272)
355 PRK05201 hslU ATP-dependent pr 95.9 0.015 3.2E-07 59.8 5.8 53 28-80 15-78 (443)
356 cd02027 APSK Adenosine 5'-phos 95.8 0.062 1.3E-06 47.7 9.2 24 54-77 1-24 (149)
357 cd03222 ABC_RNaseL_inhibitor T 95.8 0.032 6.8E-07 51.1 7.4 107 51-166 24-137 (177)
358 COG0467 RAD55 RecA-superfamily 95.8 0.03 6.6E-07 55.1 7.9 38 50-87 21-58 (260)
359 PRK05439 pantothenate kinase; 95.8 0.023 5.1E-07 56.5 7.0 29 50-78 84-112 (311)
360 TIGR03600 phage_DnaB phage rep 95.8 0.056 1.2E-06 57.4 10.4 57 29-87 173-230 (421)
361 KOG1947 Leucine rich repeat pr 95.8 0.0012 2.5E-08 71.9 -2.5 103 424-526 189-308 (482)
362 PRK12726 flagellar biosynthesi 95.8 0.071 1.5E-06 54.2 10.3 38 50-87 204-241 (407)
363 cd03216 ABC_Carb_Monos_I This 95.8 0.055 1.2E-06 48.9 8.9 114 51-166 25-147 (163)
364 PRK09270 nucleoside triphospha 95.8 0.014 3E-07 56.3 5.2 30 50-79 31-60 (229)
365 COG0194 Gmk Guanylate kinase [ 95.8 0.33 7.1E-06 43.8 13.3 25 52-76 4-28 (191)
366 PRK05480 uridine/cytidine kina 95.8 0.0094 2E-07 56.6 3.9 27 50-76 4-30 (209)
367 PRK09354 recA recombinase A; P 95.8 0.026 5.6E-07 57.0 7.1 50 37-87 45-95 (349)
368 PF00625 Guanylate_kin: Guanyl 95.7 0.012 2.6E-07 54.5 4.3 36 52-87 2-37 (183)
369 cd03247 ABCC_cytochrome_bd The 95.7 0.066 1.4E-06 49.3 9.3 111 51-165 27-161 (178)
370 TIGR02533 type_II_gspE general 95.7 0.028 6.1E-07 60.2 7.7 111 51-166 241-351 (486)
371 TIGR02236 recomb_radA DNA repa 95.7 0.031 6.7E-07 56.7 7.7 57 38-96 82-144 (310)
372 TIGR03499 FlhF flagellar biosy 95.7 0.033 7.2E-07 55.3 7.7 28 51-78 193-220 (282)
373 PRK04040 adenylate kinase; Pro 95.7 0.011 2.5E-07 54.7 4.1 26 52-77 2-27 (188)
374 PRK14737 gmk guanylate kinase; 95.7 0.024 5.3E-07 52.4 6.2 26 51-76 3-28 (186)
375 PRK11823 DNA repair protein Ra 95.7 0.026 5.6E-07 59.9 7.1 50 37-87 66-115 (446)
376 KOG0740 AAA+-type ATPase [Post 95.7 0.093 2E-06 54.1 10.7 72 4-80 134-214 (428)
377 KOG0079 GTP-binding protein H- 95.7 0.018 3.8E-07 48.9 4.5 21 55-75 11-31 (198)
378 PRK10820 DNA-binding transcrip 95.7 0.023 4.9E-07 61.9 6.8 49 26-75 202-250 (520)
379 COG0529 CysC Adenylylsulfate k 95.6 0.018 4E-07 51.0 4.8 35 50-84 21-55 (197)
380 PRK05703 flhF flagellar biosyn 95.6 0.067 1.4E-06 56.3 9.9 36 52-87 221-258 (424)
381 TIGR02788 VirB11 P-type DNA tr 95.6 0.048 1E-06 55.1 8.5 107 51-162 143-254 (308)
382 TIGR00235 udk uridine kinase. 95.6 0.012 2.6E-07 55.7 3.9 28 50-77 4-31 (207)
383 cd00227 CPT Chloramphenicol (C 95.6 0.012 2.5E-07 54.1 3.7 25 53-77 3-27 (175)
384 cd03115 SRP The signal recogni 95.6 0.075 1.6E-06 48.6 9.0 34 54-87 2-35 (173)
385 PRK00131 aroK shikimate kinase 95.6 0.012 2.5E-07 54.0 3.6 27 51-77 3-29 (175)
386 COG1121 ZnuC ABC-type Mn/Zn tr 95.5 0.088 1.9E-06 50.4 9.4 51 114-166 148-204 (254)
387 PRK03839 putative kinase; Prov 95.5 0.012 2.6E-07 54.3 3.6 24 54-77 2-25 (180)
388 cd02028 UMPK_like Uridine mono 95.5 0.015 3.4E-07 53.4 4.2 26 54-79 1-26 (179)
389 COG1419 FlhF Flagellar GTP-bin 95.5 0.11 2.5E-06 52.8 10.6 80 51-132 202-290 (407)
390 KOG0652 26S proteasome regulat 95.5 0.15 3.2E-06 48.0 10.5 54 27-80 170-233 (424)
391 PRK14723 flhF flagellar biosyn 95.5 0.15 3.3E-06 56.9 12.5 25 52-76 185-209 (767)
392 PF13245 AAA_19: Part of AAA d 95.5 0.034 7.4E-07 42.7 5.4 24 52-75 10-33 (76)
393 TIGR02525 plasmid_TraJ plasmid 95.5 0.046 1E-06 56.1 8.0 109 52-164 149-263 (372)
394 PF05970 PIF1: PIF1-like helic 95.5 0.027 5.9E-07 58.3 6.3 36 50-85 20-55 (364)
395 PF03205 MobB: Molybdopterin g 95.5 0.019 4.2E-07 50.2 4.4 35 53-87 1-36 (140)
396 PF03193 DUF258: Protein of un 95.5 0.02 4.4E-07 50.9 4.5 36 34-75 23-58 (161)
397 PRK10923 glnG nitrogen regulat 95.5 0.057 1.2E-06 58.4 9.0 48 28-76 138-185 (469)
398 PRK12727 flagellar biosynthesi 95.5 0.082 1.8E-06 56.1 9.7 28 51-78 349-376 (559)
399 TIGR03877 thermo_KaiC_1 KaiC d 95.4 0.028 6E-07 54.5 5.9 50 37-87 7-56 (237)
400 PF00560 LRR_1: Leucine Rich R 95.4 0.0095 2.1E-07 33.3 1.5 21 446-466 1-21 (22)
401 PRK14738 gmk guanylate kinase; 95.4 0.014 3E-07 55.1 3.6 26 50-75 11-36 (206)
402 PRK00625 shikimate kinase; Pro 95.4 0.014 3.1E-07 53.1 3.4 24 54-77 2-25 (173)
403 PF10236 DAP3: Mitochondrial r 95.4 0.23 5E-06 50.0 12.3 48 173-220 258-306 (309)
404 PRK13765 ATP-dependent proteas 95.3 0.019 4.1E-07 63.2 4.8 62 22-88 25-87 (637)
405 PRK05342 clpX ATP-dependent pr 95.3 0.03 6.5E-07 58.5 6.1 53 28-80 71-136 (412)
406 TIGR01360 aden_kin_iso1 adenyl 95.3 0.015 3.3E-07 54.0 3.6 25 52-76 3-27 (188)
407 cd01124 KaiC KaiC is a circadi 95.3 0.019 4E-07 53.4 4.1 33 55-87 2-34 (187)
408 COG3640 CooC CO dehydrogenase 95.3 0.026 5.6E-07 52.5 4.8 38 54-91 2-39 (255)
409 cd03230 ABC_DR_subfamily_A Thi 95.3 0.063 1.4E-06 49.1 7.5 115 51-166 25-160 (173)
410 TIGR01818 ntrC nitrogen regula 95.3 0.084 1.8E-06 57.0 9.7 49 28-77 134-182 (463)
411 KOG0730 AAA+-type ATPase [Post 95.3 0.05 1.1E-06 58.1 7.5 153 50-217 216-386 (693)
412 PF03266 NTPase_1: NTPase; In 95.3 0.014 3E-07 52.8 3.0 24 55-78 2-25 (168)
413 PRK03846 adenylylsulfate kinas 95.3 0.028 6.1E-07 52.7 5.2 37 50-86 22-58 (198)
414 TIGR01425 SRP54_euk signal rec 95.3 0.06 1.3E-06 56.1 8.0 37 51-87 99-135 (429)
415 PRK00889 adenylylsulfate kinas 95.3 0.026 5.6E-07 51.8 4.9 28 51-78 3-30 (175)
416 COG4618 ArpD ABC-type protease 95.3 0.058 1.3E-06 55.9 7.6 25 52-76 362-386 (580)
417 cd03281 ABC_MSH5_euk MutS5 hom 95.3 0.07 1.5E-06 50.6 7.8 24 52-75 29-52 (213)
418 KOG0651 26S proteasome regulat 95.2 0.053 1.1E-06 52.5 6.8 30 51-80 165-194 (388)
419 COG2805 PilT Tfp pilus assembl 95.2 0.12 2.6E-06 50.1 9.1 110 50-162 123-234 (353)
420 KOG3347 Predicted nucleotide k 95.2 0.015 3.2E-07 49.8 2.7 24 52-75 7-30 (176)
421 TIGR03878 thermo_KaiC_2 KaiC d 95.2 0.032 7E-07 54.7 5.6 38 50-87 34-71 (259)
422 COG1102 Cmk Cytidylate kinase 95.2 0.016 3.5E-07 50.5 3.0 24 54-77 2-25 (179)
423 cd00071 GMPK Guanosine monopho 95.2 0.015 3.3E-07 50.8 2.9 26 55-80 2-27 (137)
424 COG1936 Predicted nucleotide k 95.2 0.016 3.5E-07 51.2 3.0 20 54-73 2-21 (180)
425 cd03283 ABC_MutS-like MutS-lik 95.2 0.049 1.1E-06 51.0 6.5 23 53-75 26-48 (199)
426 COG0003 ArsA Predicted ATPase 95.2 0.027 5.9E-07 56.4 5.0 36 52-87 2-37 (322)
427 cd02024 NRK1 Nicotinamide ribo 95.2 0.015 3.3E-07 53.5 2.9 23 54-76 1-23 (187)
428 TIGR00554 panK_bact pantothena 95.2 0.053 1.1E-06 53.6 6.9 28 50-77 60-87 (290)
429 KOG1969 DNA replication checkp 95.2 0.032 7E-07 60.1 5.6 27 50-76 324-350 (877)
430 PRK07276 DNA polymerase III su 95.2 0.52 1.1E-05 46.6 13.8 68 122-190 103-173 (290)
431 cd02021 GntK Gluconate kinase 95.2 0.015 3.3E-07 51.8 2.9 22 54-75 1-22 (150)
432 PF08298 AAA_PrkA: PrkA AAA do 95.2 0.03 6.4E-07 56.0 5.1 53 27-79 60-115 (358)
433 cd03228 ABCC_MRP_Like The MRP 95.1 0.1 2.2E-06 47.6 8.4 114 51-166 27-160 (171)
434 COG1428 Deoxynucleoside kinase 95.1 0.02 4.3E-07 52.6 3.5 27 51-77 3-29 (216)
435 TIGR01359 UMP_CMP_kin_fam UMP- 95.1 0.016 3.4E-07 53.7 3.0 23 54-76 1-23 (183)
436 PHA02244 ATPase-like protein 95.1 0.021 4.6E-07 57.7 4.0 47 28-79 96-146 (383)
437 cd03246 ABCC_Protease_Secretio 95.1 0.071 1.5E-06 48.8 7.3 114 51-165 27-160 (173)
438 TIGR02322 phosphon_PhnN phosph 95.1 0.019 4.2E-07 52.9 3.5 25 53-77 2-26 (179)
439 PRK12339 2-phosphoglycerate ki 95.1 0.022 4.7E-07 53.1 3.8 25 52-76 3-27 (197)
440 PRK15115 response regulator Gl 95.1 0.093 2E-06 56.3 9.2 49 28-77 134-182 (444)
441 COG0396 sufC Cysteine desulfur 95.1 0.11 2.5E-06 48.3 8.2 57 116-175 155-217 (251)
442 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.044 9.5E-07 52.8 6.0 49 38-87 7-55 (229)
443 COG2804 PulE Type II secretory 95.1 0.12 2.5E-06 54.1 9.2 110 50-164 256-365 (500)
444 PRK10416 signal recognition pa 95.1 0.087 1.9E-06 53.1 8.2 36 51-86 113-148 (318)
445 PF02374 ArsA_ATPase: Anion-tr 95.0 0.024 5.1E-07 56.9 4.1 35 53-87 2-36 (305)
446 PRK10751 molybdopterin-guanine 95.0 0.041 8.9E-07 49.7 5.2 29 50-78 4-32 (173)
447 PRK06217 hypothetical protein; 95.0 0.019 4.1E-07 53.1 3.2 24 54-77 3-26 (183)
448 TIGR01069 mutS2 MutS2 family p 95.0 0.088 1.9E-06 59.8 9.0 183 51-244 321-522 (771)
449 PRK05973 replicative DNA helic 95.0 0.04 8.8E-07 52.6 5.4 38 50-87 62-99 (237)
450 TIGR02782 TrbB_P P-type conjug 95.0 0.072 1.6E-06 53.3 7.5 87 52-141 132-222 (299)
451 PRK09435 membrane ATPase/prote 95.0 0.06 1.3E-06 54.3 6.9 41 38-79 43-83 (332)
452 cd03284 ABC_MutS1 MutS1 homolo 95.0 0.078 1.7E-06 50.4 7.3 23 52-74 30-52 (216)
453 PRK00409 recombination and DNA 95.0 0.1 2.2E-06 59.4 9.5 177 50-244 325-527 (782)
454 cd01135 V_A-ATPase_B V/A-type 95.0 0.075 1.6E-06 51.7 7.1 27 51-77 68-94 (276)
455 cd02023 UMPK Uridine monophosp 95.0 0.018 3.8E-07 54.2 2.9 23 54-76 1-23 (198)
456 PLN03186 DNA repair protein RA 95.0 0.076 1.7E-06 53.9 7.6 60 37-98 109-174 (342)
457 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.13 2.8E-06 46.2 8.4 112 52-166 25-145 (157)
458 PLN03187 meiotic recombination 95.0 0.095 2.1E-06 53.2 8.2 59 38-98 113-177 (344)
459 TIGR01650 PD_CobS cobaltochela 95.0 0.034 7.5E-07 55.5 4.9 47 29-80 46-92 (327)
460 PRK13947 shikimate kinase; Pro 94.9 0.022 4.8E-07 52.0 3.4 24 54-77 3-26 (171)
461 COG0563 Adk Adenylate kinase a 94.9 0.022 4.7E-07 52.1 3.2 22 54-75 2-23 (178)
462 COG2019 AdkA Archaeal adenylat 94.9 0.029 6.2E-07 49.2 3.7 25 52-76 4-28 (189)
463 cd04121 Rab40 Rab40 subfamily. 94.9 0.13 2.8E-06 47.8 8.4 23 53-75 7-29 (189)
464 TIGR02768 TraA_Ti Ti-type conj 94.9 0.097 2.1E-06 59.4 9.0 100 52-158 368-474 (744)
465 COG0468 RecA RecA/RadA recombi 94.9 0.11 2.4E-06 50.8 8.2 38 50-87 58-95 (279)
466 PRK15453 phosphoribulokinase; 94.9 0.04 8.7E-07 53.5 5.1 29 50-78 3-31 (290)
467 cd02020 CMPK Cytidine monophos 94.9 0.021 4.5E-07 50.6 3.0 23 54-76 1-23 (147)
468 PF06414 Zeta_toxin: Zeta toxi 94.9 0.17 3.6E-06 47.5 9.3 92 50-146 13-116 (199)
469 PRK13948 shikimate kinase; Pro 94.9 0.027 5.7E-07 51.7 3.6 29 50-78 8-36 (182)
470 PRK13768 GTPase; Provisional 94.9 0.036 7.9E-07 54.1 4.8 35 53-87 3-37 (253)
471 COG0714 MoxR-like ATPases [Gen 94.9 0.028 6.2E-07 57.4 4.3 49 27-80 23-71 (329)
472 PF02367 UPF0079: Uncharacteri 94.9 0.046 1E-06 46.2 4.8 27 50-76 13-39 (123)
473 KOG0726 26S proteasome regulat 94.8 0.038 8.3E-07 52.8 4.6 53 28-80 185-247 (440)
474 PF13306 LRR_5: Leucine rich r 94.8 0.16 3.4E-06 43.7 8.4 82 378-476 4-89 (129)
475 PRK10436 hypothetical protein; 94.8 0.084 1.8E-06 56.0 7.7 108 50-163 216-324 (462)
476 PRK04220 2-phosphoglycerate ki 94.8 0.067 1.5E-06 52.8 6.5 26 51-76 91-116 (301)
477 PTZ00035 Rad51 protein; Provis 94.8 0.11 2.5E-06 52.8 8.4 39 37-76 104-142 (337)
478 PRK04328 hypothetical protein; 94.8 0.052 1.1E-06 52.9 5.7 49 38-87 10-58 (249)
479 COG1763 MobB Molybdopterin-gua 94.8 0.039 8.4E-07 49.1 4.3 36 52-87 2-37 (161)
480 PRK06067 flagellar accessory p 94.8 0.053 1.1E-06 52.5 5.7 50 37-87 11-60 (234)
481 TIGR01287 nifH nitrogenase iro 94.8 0.036 7.8E-07 55.1 4.6 35 53-87 1-35 (275)
482 cd02025 PanK Pantothenate kina 94.8 0.021 4.5E-07 54.5 2.7 24 54-77 1-24 (220)
483 PF06745 KaiC: KaiC; InterPro 94.8 0.025 5.4E-07 54.4 3.3 49 38-87 6-55 (226)
484 TIGR00382 clpX endopeptidase C 94.7 0.053 1.1E-06 56.4 5.9 54 27-80 76-144 (413)
485 cd03287 ABC_MSH3_euk MutS3 hom 94.7 0.094 2E-06 49.9 7.1 112 51-167 30-160 (222)
486 PRK13236 nitrogenase reductase 94.7 0.05 1.1E-06 54.6 5.5 38 50-87 4-41 (296)
487 PRK12597 F0F1 ATP synthase sub 94.7 0.084 1.8E-06 55.6 7.3 40 51-91 142-182 (461)
488 cd01122 GP4d_helicase GP4d_hel 94.7 0.14 3.1E-06 50.7 8.7 37 51-87 29-66 (271)
489 cd01983 Fer4_NifH The Fer4_Nif 94.7 0.039 8.4E-07 44.6 3.9 25 54-78 1-25 (99)
490 PRK05537 bifunctional sulfate 94.7 0.061 1.3E-06 58.8 6.5 51 27-78 368-418 (568)
491 cd02117 NifH_like This family 94.7 0.04 8.8E-07 52.3 4.5 35 53-87 1-35 (212)
492 smart00534 MUTSac ATPase domai 94.7 0.086 1.9E-06 48.8 6.6 112 54-167 1-128 (185)
493 smart00072 GuKc Guanylate kina 94.7 0.031 6.7E-07 51.8 3.6 30 52-81 2-31 (184)
494 PRK13764 ATPase; Provisional 94.7 0.1 2.2E-06 56.9 7.9 86 52-141 257-342 (602)
495 PF08477 Miro: Miro-like prote 94.6 0.03 6.6E-07 47.4 3.3 21 55-75 2-22 (119)
496 TIGR00176 mobB molybdopterin-g 94.6 0.039 8.4E-07 49.3 4.0 26 54-79 1-26 (155)
497 PRK13900 type IV secretion sys 94.6 0.099 2.2E-06 53.1 7.4 90 51-141 159-253 (332)
498 COG3854 SpoIIIAA ncharacterize 94.6 0.36 7.7E-06 44.9 10.0 106 52-162 137-254 (308)
499 PRK13230 nitrogenase reductase 94.6 0.047 1E-06 54.4 4.9 35 53-87 2-36 (279)
500 TIGR00455 apsK adenylylsulfate 94.6 0.18 3.9E-06 46.6 8.5 29 50-78 16-44 (184)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1e-74 Score=676.93 Aligned_cols=643 Identities=37% Similarity=0.633 Sum_probs=557.4
Q ss_pred ChhHHHHHHHHHHHHhhhhcccCCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 1 NDAQLVNKIVEDVLKNLEKATVATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 1 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
+|+.+|++|+++|.+++... ++...+.+|||+.+++++.+++.... ++.++|+|+||||+||||||+++++++...|
T Consensus 159 ~E~~~i~~Iv~~v~~~l~~~--~~~~~~~~vG~~~~l~~l~~lL~l~~-~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F 235 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKLNLT--PSNDFEDFVGIEDHIAKMSSLLHLES-EEVRMVGIWGSSGIGKTTIARALFSRLSRQF 235 (1153)
T ss_pred CHHHHHHHHHHHHHHhhccc--cCcccccccchHHHHHHHHHHHcccc-CceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence 47899999999999999876 66777899999999999999987544 6789999999999999999999999999999
Q ss_pred CceEEEecc--ccc---ccc------c-hh----hHhHHHhhhcCCCC--chhHHHHhcCcceEEEEeCCCCchhhhhhh
Q 047214 81 EGRCFLSDI--RKN---SET------G-GG----KILSEKLEVAGANI--PHFTKERVRRMKVLIVLDDVNEVGQLEGLI 142 (658)
Q Consensus 81 ~~~~~~~~~--~~~---~~~------~-~~----~~l~~~l~~~~~~~--~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~ 142 (658)
+..+|+... ... ... . .+ +.+.++++..+... ...++++++++++||||||||+...|+.+.
T Consensus 236 ~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~ 315 (1153)
T PLN03210 236 QSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALA 315 (1153)
T ss_pred CeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHH
Confidence 998887521 110 000 0 01 22333333322221 366888999999999999999999999998
Q ss_pred cccCCCCCCCEEEEEecchHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHH
Q 047214 143 GELDQFGPGSRIVVTTRDKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKV 222 (658)
Q Consensus 143 ~~l~~~~~~~~ilvttR~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 222 (658)
......++|++||||||+..++..+ +..++|.++.++.++|+++|.+++|+...+++.+.+++++|+++|+|+|||+++
T Consensus 316 ~~~~~~~~GsrIIiTTrd~~vl~~~-~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~v 394 (1153)
T PLN03210 316 GQTQWFGSGSRIIVITKDKHFLRAH-GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNV 394 (1153)
T ss_pred hhCccCCCCcEEEEEeCcHHHHHhc-CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHH
Confidence 7766667899999999999998776 667899999999999999999999987666677889999999999999999999
Q ss_pred hhcccccccHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCCh-hhhchhceeeecCCCCCHHHHHHHhcc---ccccc
Q 047214 223 LGSSLCLKRKSHWENLLHDLNRICESDIHDIYKKLKITFDELTP-RVQSIFLDIACFFEGEDKDFVARILDD---SESDG 298 (658)
Q Consensus 223 ~a~~l~~~~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~~a~fp~~~~~~~l~~~~~~---~~~~~ 298 (658)
+|+.+++++..+|..++.++...... .+..++++||+.|++ ..|.||+++|+|+.+.+.+.+..|+++ .+...
T Consensus 395 lgs~L~~k~~~~W~~~l~~L~~~~~~---~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~ 471 (1153)
T PLN03210 395 LGSYLRGRDKEDWMDMLPRLRNGLDG---KIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIG 471 (1153)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCccH---HHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhC
Confidence 99999999999999999998875543 459999999999987 489999999999999999999999887 55667
Q ss_pred hHHhhhccCceeeCCeEEeehHHHHHHHHHhhhcccCCCCCccccCChhHHHHHHhhccCCcceeEeeccCccccccccC
Q 047214 299 LDVLIDKSLISISGNCLQMHDLLQEMGQQIVRQESEKEPGKRSRLCDPKEIRRVLKHNKGTDAIEGISLDLSKIKGINLD 378 (658)
Q Consensus 299 l~~L~~~~ll~~~~~~~~~H~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 378 (658)
++.|++++|++...+.+.||+++|++++++++++. .+++++.++|...+++.++..+.+...+++++++.+++....+.
T Consensus 472 l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 472 LKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred hHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 99999999999888899999999999999999986 67899999999999999999999999999999999999888999
Q ss_pred chhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcc
Q 047214 379 SGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVE 458 (658)
Q Consensus 379 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~ 458 (658)
...|.+|++|+.|.+..+.... .......+|..+..+|.+|+.|++.++.++.+|..+.+.+|+.|++++|.+.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~------~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQ------KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccc------cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc
Confidence 9999999999999998764311 0111356888899998899999999999999999999999999999999999
Q ss_pred cccccccCCCCccEEeccCCCcccccC-CCcCCCccEEEeec-CCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCC
Q 047214 459 QLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDY-TNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFV 536 (658)
Q Consensus 459 ~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 536 (658)
.+|..+..+++|+.|++++|..+..+| ++.+++|+.|++.+ +.+..+|..+..+++|+.|++++|..+..+|...+++
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~ 704 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLK 704 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCC
Confidence 999999999999999999998889999 99999999999998 5678899999999999999999999999999988999
Q ss_pred CCcEEeccCCCCccccCcccCCccEEEccccccccccccc------------------------------cCCCCCCEEe
Q 047214 537 CPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSI------------------------------ECLTDLEVLD 586 (658)
Q Consensus 537 ~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~------------------------------~~l~~L~~L~ 586 (658)
+|+.|++++|..+..+|...++|+.|++++|.+..+|..+ ...++|+.|+
T Consensus 705 sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~ 784 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784 (1153)
T ss_pred CCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhee
Confidence 9999999999999999988899999999999988887532 1135788888
Q ss_pred cCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC---CCCCcccEEeccCCccccccCCCCCCccEEeccCCCC
Q 047214 587 LRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP---ALPLCLKSLDLRDCKMLQSLPELPSCLEALDLTSCNM 658 (658)
Q Consensus 587 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~---~l~~~L~~L~l~~~~~l~~i~~~~~~L~~L~l~~~~~ 658 (658)
+++|+....+|.+++++++|+.|++++|+.++.+| .+++ |+.|++++|..++.+|..+.+|+.|+|++|.+
T Consensus 785 Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~s-L~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLES-LESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858 (1153)
T ss_pred CCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccc-cCEEECCCCCccccccccccccCEeECCCCCC
Confidence 88888888899999999999999999999999988 4677 99999999998888887666777777776643
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.6e-61 Score=531.05 Aligned_cols=587 Identities=25% Similarity=0.304 Sum_probs=387.1
Q ss_pred ccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh---hccccCceEEEeccccccccchh-hHhHHHhh
Q 047214 31 VGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ---FSSEFEGRCFLSDIRKNSETGGG-KILSEKLE 106 (658)
Q Consensus 31 vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~-~~l~~~l~ 106 (658)
||.+..++.+.+.|.++ +.++++|+||||+||||||+++.++ ++.+|+.++|+. ++..+....+ +.+.+-++
T Consensus 161 VG~e~~~~kl~~~L~~d---~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMED---DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-VSKEFTTRKIQQTILERLG 236 (889)
T ss_pred ccHHHHHHHHHHHhccC---CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE-EcccccHHhHHHHHHHHhc
Confidence 99999999999999874 3499999999999999999999998 568999999999 7776666655 33333333
Q ss_pred hcCCC--------CchhHHHHhcCcceEEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchHHHHhhcCCCceEEcCC
Q 047214 107 VAGAN--------IPHFTKERVRRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRVLEKFRGEKKIYRVNG 178 (658)
Q Consensus 107 ~~~~~--------~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~~~~~~~~~~~~~l~~ 178 (658)
..+.. .+..+.+.|+.+||+||+||||+..+|+.+..+++....|++|++|||+..++....+....++++-
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~ 316 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVEC 316 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccc
Confidence 21111 1667888999999999999999999999999999988889999999999999999447789999999
Q ss_pred CChHHHHHHHHHHhcCC-CCCCchhHHHHHHHHHHcCCCcchhHHhhcccccc-cHHHHHHHHHHHhhcCCc----chhh
Q 047214 179 LEFEEAFEHFCNFAFEE-NHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCLK-RKSHWENLLHDLNRICES----DIHD 252 (658)
Q Consensus 179 L~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~-~~~~w~~~~~~l~~~~~~----~~~~ 252 (658)
|+.++||+||.+.++.. ....+.++++|++++++|+|+|||+.++|+.|+.+ +..+|.++.+.+...... ..+.
T Consensus 317 L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~ 396 (889)
T KOG4658|consen 317 LTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEES 396 (889)
T ss_pred cCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhh
Confidence 99999999999999776 33445589999999999999999999999999999 777999999988776222 2356
Q ss_pred HHhhhhhhccCCChhhhchhceeeecCCCCCHHH---HHHHhcc--------------ccccchHHhhhccCceeeC---
Q 047214 253 IYKKLKITFDELTPRVQSIFLDIACFFEGEDKDF---VARILDD--------------SESDGLDVLIDKSLISISG--- 312 (658)
Q Consensus 253 l~~~l~~s~~~L~~~~~~~l~~~a~fp~~~~~~~---l~~~~~~--------------~~~~~l~~L~~~~ll~~~~--- 312 (658)
+..++.+||+.||++.|.||+|||.||+++.++. +..|+++ ++..++..|++++|+....
T Consensus 397 i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~ 476 (889)
T KOG4658|consen 397 ILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEG 476 (889)
T ss_pred hHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccc
Confidence 7899999999999889999999999999976654 6677766 6678899999999998874
Q ss_pred --CeEEeehHHHHHHHHHhhhcccCCCCCccccCChh-HHHHHHhhccCCcceeEeeccCccccccccCchhhcCCCCCc
Q 047214 313 --NCLQMHDLLQEMGQQIVRQESEKEPGKRSRLCDPK-EIRRVLKHNKGTDAIEGISLDLSKIKGINLDSGAFTNMSNLR 389 (658)
Q Consensus 313 --~~~~~H~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 389 (658)
..|.|||++||+|.+++++.+..... .+.... ...+ ..+...+..++++++..+.+....... ..+.|+
T Consensus 477 ~~~~~kmHDvvRe~al~ias~~~~~~e~---~iv~~~~~~~~-~~~~~~~~~~rr~s~~~~~~~~~~~~~----~~~~L~ 548 (889)
T KOG4658|consen 477 RKETVKMHDVVREMALWIASDFGKQEEN---QIVSDGVGLSE-IPQVKSWNSVRRMSLMNNKIEHIAGSS----ENPKLR 548 (889)
T ss_pred ceeEEEeeHHHHHHHHHHhccccccccc---eEEECCcCccc-cccccchhheeEEEEeccchhhccCCC----CCCccc
Confidence 78999999999999999955432211 111110 1111 222233445555555544442221111 112455
Q ss_pred EEEeecCcccCcchhhhcccCceecCCC-CCCcccccceEEeccc-CCCCCCCCC-CCCCccEEEecCCCcccccccccC
Q 047214 390 LLKFYVPKLLGMSIEEQLSDSKVLLPDG-LDYLPKNLRYLHWDKY-PLRTLPSNF-KPENLVELNLHFSKVEQLWEGKKE 466 (658)
Q Consensus 390 ~L~l~~~~~~~~~~~~~~~~~~~~~p~~-~~~l~~~L~~L~l~~~-~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~ 466 (658)
+|-+.+|.. . ...++.. |..+| .|++|+|++| .+..+|..+ .|.+|++|+++++.|..+|..+++
T Consensus 549 tLll~~n~~-~----------l~~is~~ff~~m~-~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~ 616 (889)
T KOG4658|consen 549 TLLLQRNSD-W----------LLEISGEFFRSLP-LLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN 616 (889)
T ss_pred eEEEeecch-h----------hhhcCHHHHhhCc-ceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH
Confidence 555555430 0 0122222 33344 5555555543 344555555 455555555555555555555555
Q ss_pred CCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcc---cccccccCCCCCCEEec---------------------
Q 047214 467 AFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFA---CVPSSIQNFKYLSALSF--------------------- 520 (658)
Q Consensus 467 l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~---~~~~~~~~l~~L~~L~l--------------------- 520 (658)
|++|.+|++.++.....+| ...|++|++|.+...... ..-..+.++.+|+.+..
T Consensus 617 Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~ 696 (889)
T KOG4658|consen 617 LKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLL 696 (889)
T ss_pred HHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHh
Confidence 5555555555554444444 333555555555442210 01112223333333322
Q ss_pred -----cCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcc---------cCCccEEEccccccccccccccCCCCCCEEe
Q 047214 521 -----EGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQI---------SGKITRLYLGQSAIEEVPSSIECLTDLEVLD 586 (658)
Q Consensus 521 -----~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---------~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~ 586 (658)
.+|...+..+....+.+|+.|.+.+|........+ ++++..+.+.++..-..+.+.-..|+|+.|.
T Consensus 697 ~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~ 776 (889)
T KOG4658|consen 697 QSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLS 776 (889)
T ss_pred HhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEE
Confidence 22222222333346778888888877654322222 2233333333333333444455678999999
Q ss_pred cCCCccchhhhhhhcCCCCC----------cEE----eccCCcCCccCC-CCCCcccEEeccCCccccccC
Q 047214 587 LRDCKRLKRISTRFCKLRSL----------VDL----FLHGCLNLQSLP-ALPLCLKSLDLRDCKMLQSLP 642 (658)
Q Consensus 587 l~~~~~~~~~~~~~~~l~~L----------~~L----~l~~~~~l~~l~-~l~~~L~~L~l~~~~~l~~i~ 642 (658)
+..|+....+......+..+ ..+ ++.+.+.+...| .+|. |+.+.+..||+++.+|
T Consensus 777 l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~-l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 777 LVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK-LEELIVEECPKLGKLP 846 (889)
T ss_pred EecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccc-hhheehhcCcccccCc
Confidence 99888665543322222222 222 222222233333 4566 8888888888888887
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=3.3e-36 Score=303.15 Aligned_cols=258 Identities=31% Similarity=0.461 Sum_probs=196.1
Q ss_pred ccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh--hccccCceEEEeccccccccch-hhHhHHHhhhcC
Q 047214 33 LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ--FSSEFEGRCFLSDIRKNSETGG-GKILSEKLEVAG 109 (658)
Q Consensus 33 R~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~ 109 (658)
||.++++|.++|.... ++.++|+|+|+||+||||||.+++++ .+++|+.++|+. +........ ++.+...+....
T Consensus 1 re~~~~~l~~~L~~~~-~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS-NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS-LSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTT-TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE-EES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCC-CCeEEEEEEcCCcCCcceeeeecccccccccccccccccc-cccccccccccccccccccccc
Confidence 7899999999999755 67999999999999999999999999 889999999998 444333332 233444444332
Q ss_pred CC-----C----chhHHHHhcCcceEEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchHHHHhhcCCCceEEcCCCC
Q 047214 110 AN-----I----PHFTKERVRRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRVLEKFRGEKKIYRVNGLE 180 (658)
Q Consensus 110 ~~-----~----~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~~~~~~~~~~~~~l~~L~ 180 (658)
.+ . .+.+.+.++++++||||||||+...|+.+...++....+++||+|||+..+...+......+.+++|+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~ 158 (287)
T PF00931_consen 79 SSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLS 158 (287)
T ss_dssp STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--
T ss_pred cccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 11 1 67788999999999999999999999998887776678999999999998877763447899999999
Q ss_pred hHHHHHHHHHHhcCCC-CCCchhHHHHHHHHHHcCCCcchhHHhhcccccc-cHHHHHHHHHHHhhcCC---cchhhHHh
Q 047214 181 FEEAFEHFCNFAFEEN-HCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCLK-RKSHWENLLHDLNRICE---SDIHDIYK 255 (658)
Q Consensus 181 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~-~~~~w~~~~~~l~~~~~---~~~~~l~~ 255 (658)
.++|++||.+.++... ...+..++.+++|++.|+|+|+||.++|++++.+ +..+|..+++.+..... .....+..
T Consensus 159 ~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~ 238 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999987654 3345556789999999999999999999999766 67889999988766532 13467899
Q ss_pred hhhhhccCCChhhhchhceeeecCCCCC--HHHH-HHHhc
Q 047214 256 KLKITFDELTPRVQSIFLDIACFFEGED--KDFV-ARILD 292 (658)
Q Consensus 256 ~l~~s~~~L~~~~~~~l~~~a~fp~~~~--~~~l-~~~~~ 292 (658)
++.+||+.|+++.|+||++||+||.++. .+.+ ..|.+
T Consensus 239 ~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~ 278 (287)
T PF00931_consen 239 ALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVA 278 (287)
T ss_dssp HHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT
T ss_pred cceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHH
Confidence 9999999999999999999999999865 5554 44443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=1.2e-22 Score=238.92 Aligned_cols=280 Identities=20% Similarity=0.213 Sum_probs=146.8
Q ss_pred ceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCC-CcccccceEEecccCCCCCC
Q 047214 361 AIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLD-YLPKNLRYLHWDKYPLRTLP 439 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~~~L~~L~l~~~~l~~lp 439 (658)
.+..+.+..+.+.. .....|.++++|++|++++|.+. ..+|..+. .+. +|++|++++|++....
T Consensus 70 ~v~~L~L~~~~i~~--~~~~~~~~l~~L~~L~Ls~n~~~------------~~ip~~~~~~l~-~L~~L~Ls~n~l~~~~ 134 (968)
T PLN00113 70 RVVSIDLSGKNISG--KISSAIFRLPYIQTINLSNNQLS------------GPIPDDIFTTSS-SLRYLNLSNNNFTGSI 134 (968)
T ss_pred cEEEEEecCCCccc--cCChHHhCCCCCCEEECCCCccC------------CcCChHHhccCC-CCCEEECcCCcccccc
Confidence 45556555444322 23456778888888888888873 23555544 444 6677777666665322
Q ss_pred CCCCCCCccEEEecCCCcc-cccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcc-cccccccCCCCC
Q 047214 440 SNFKPENLVELNLHFSKVE-QLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFA-CVPSSIQNFKYL 515 (658)
Q Consensus 440 ~~~~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L 515 (658)
+...+.+|++|+|++|.+. .+|..++.+++|++|++++|.....+| ++++++|++|++++|.+. .+|..+.++++|
T Consensus 135 p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 214 (968)
T PLN00113 135 PRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSL 214 (968)
T ss_pred CccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCc
Confidence 2234556666666666655 445556666666666666664444455 556666666666665543 345555666666
Q ss_pred CEEeccCCCCCCcCCCCC-CCCCCcEEeccCCCCccccCcc---cCCccEEEccccccc-cccccccCCCCCCEEecCCC
Q 047214 516 SALSFEGCKSLRSFPSNF-RFVCPVTINFSSCVNLIEFPQI---SGKITRLYLGQSAIE-EVPSSIECLTDLEVLDLRDC 590 (658)
Q Consensus 516 ~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~ 590 (658)
++|++++|.....+|..+ ++++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+..+++|++|++++|
T Consensus 215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 294 (968)
T PLN00113 215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294 (968)
T ss_pred cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence 666666554333444432 4555566666555433333332 234445555555544 34444455555555555555
Q ss_pred ccchhhhhhhcCCCCCcEEeccCCcCCccCC----CCCCcccEEeccCCccccccCC---CCCCccEEeccCC
Q 047214 591 KRLKRISTRFCKLRSLVDLFLHGCLNLQSLP----ALPLCLKSLDLRDCKMLQSLPE---LPSCLEALDLTSC 656 (658)
Q Consensus 591 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~----~l~~~L~~L~l~~~~~l~~i~~---~~~~L~~L~l~~~ 656 (658)
.....+|..+..+++|+.|++++|.....+| .+|+ |+.|++++|.....+|. .+++|+.|++++|
T Consensus 295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR-LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCC-CCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 4444444444555555555555544322222 3444 44555544443333332 2333444444444
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=1.9e-23 Score=209.68 Aligned_cols=280 Identities=20% Similarity=0.288 Sum_probs=222.0
Q ss_pred CcceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCC
Q 047214 359 TDAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTL 438 (658)
Q Consensus 359 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~l 438 (658)
...++.+.+..+.+ ..+..+.++.++.||+|+++.|.|...|- ..+|.. + ++++|+|++|.|+.+
T Consensus 124 sghl~~L~L~~N~I--~sv~se~L~~l~alrslDLSrN~is~i~~--------~sfp~~----~-ni~~L~La~N~It~l 188 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLI--SSVTSEELSALPALRSLDLSRNLISEIPK--------PSFPAK----V-NIKKLNLASNRITTL 188 (873)
T ss_pred ccceeEEeeecccc--ccccHHHHHhHhhhhhhhhhhchhhcccC--------CCCCCC----C-CceEEeecccccccc
Confidence 34466666665555 44677888899999999999999865431 223332 2 899999999999988
Q ss_pred CCCC--CCCCccEEEecCCCccccccc-ccCCCCccEEeccCCCccccc---CCCcCCCccEEEeecCCcccccc-cccC
Q 047214 439 PSNF--KPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCRHFIDM---SYPSAPNLETYLLDYTNFACVPS-SIQN 511 (658)
Q Consensus 439 p~~~--~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~-~~~~ 511 (658)
.... ++.+|..|.|+.|.++.+|.. ++.|++|+.|+|..|. +..+ .|.++++|+.|.+..|++..+.+ .|..
T Consensus 189 ~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~ 267 (873)
T KOG4194|consen 189 ETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYG 267 (873)
T ss_pred ccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceee
Confidence 7664 788999999999999999987 6679999999999985 3322 29999999999999999988765 4788
Q ss_pred CCCCCEEeccCCCCCCcCCCCC--CCCCCcEEeccCCCCccccC----cccCCccEEEcccccccccccc-ccCCCCCCE
Q 047214 512 FKYLSALSFEGCKSLRSFPSNF--RFVCPVTINFSSCVNLIEFP----QISGKITRLYLGQSAIEEVPSS-IECLTDLEV 584 (658)
Q Consensus 512 l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~ 584 (658)
|.++++|++..| .+..+..++ +++.|+.|+++.|. +..+. +..++|+.|+|++|.|..+++. |..++.|+.
T Consensus 268 l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~ 345 (873)
T KOG4194|consen 268 LEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEE 345 (873)
T ss_pred ecccceeecccc-hhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEeccccccccCChhHHHHHHHhhh
Confidence 999999999987 677776654 89999999999874 33222 3468999999999999998875 888999999
Q ss_pred EecCCCccchhhhhhhcCCCCCcEEeccCCcC---Ccc----CCCCCCcccEEeccCCccccccCC----CCCCccEEec
Q 047214 585 LDLRDCKRLKRISTRFCKLRSLVDLFLHGCLN---LQS----LPALPLCLKSLDLRDCKMLQSLPE----LPSCLEALDL 653 (658)
Q Consensus 585 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---l~~----l~~l~~~L~~L~l~~~~~l~~i~~----~~~~L~~L~l 653 (658)
|++++|....---..|.++++|++|++++|.. ++. +.++|+ |+.|++.+|. ++.||. +++.|++|+|
T Consensus 346 LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~-LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 346 LNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPS-LRKLRLTGNQ-LKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchh-hhheeecCce-eeecchhhhccCcccceecC
Confidence 99999874333334578899999999998762 221 227898 9999999888 888885 6888999999
Q ss_pred cCCCC
Q 047214 654 TSCNM 658 (658)
Q Consensus 654 ~~~~~ 658 (658)
.+|.+
T Consensus 424 ~~Nai 428 (873)
T KOG4194|consen 424 GDNAI 428 (873)
T ss_pred CCCcc
Confidence 99865
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=8.3e-22 Score=231.81 Aligned_cols=243 Identities=18% Similarity=0.184 Sum_probs=125.9
Q ss_pred cCCCCCCcccccceEEecccCCC-CCCCCC-CCCCccEEEecCCCcc-cccccccCCCCccEEeccCCCcccccC--CCc
Q 047214 414 LPDGLDYLPKNLRYLHWDKYPLR-TLPSNF-KPENLVELNLHFSKVE-QLWEGKKEAFKLKSINLSHCRHFIDMS--YPS 488 (658)
Q Consensus 414 ~p~~~~~l~~~L~~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~ 488 (658)
+|..++.+. +|++|++++|.+. .+|..+ .+.+|++|++++|.+. .+|..++.+++|++|++++|.....+| +.+
T Consensus 204 ~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 282 (968)
T PLN00113 204 IPRELGQMK-SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282 (968)
T ss_pred CChHHcCcC-CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh
Confidence 344444443 4444444444443 333333 4444444444444443 333344444444444444443333333 444
Q ss_pred CCCccEEEeecCCcc-cccccccCCCCCCEEeccCCCCCCcCCCCC-CCCCCcEEeccCCCCccccCcc---cCCccEEE
Q 047214 489 APNLETYLLDYTNFA-CVPSSIQNFKYLSALSFEGCKSLRSFPSNF-RFVCPVTINFSSCVNLIEFPQI---SGKITRLY 563 (658)
Q Consensus 489 l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~ 563 (658)
+++|++|++++|.+. .+|..+..+++|+.|++++|.....+|..+ .+++|+.|++++|.....+|.. ..+|+.|+
T Consensus 283 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 444444444444442 233344444455555554443333333322 4555555555555433334432 23455566
Q ss_pred ccccccc-cccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC----CCCCcccEEeccCCccc
Q 047214 564 LGQSAIE-EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP----ALPLCLKSLDLRDCKML 638 (658)
Q Consensus 564 l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~----~l~~~L~~L~l~~~~~l 638 (658)
+++|.+. .+|..+..+++|+.|++++|.....+|..++.+++|+.|++++|..-+.+| .+|. |+.|++++|...
T Consensus 363 Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~Ls~N~l~ 441 (968)
T PLN00113 363 LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPL-VYFLDISNNNLQ 441 (968)
T ss_pred CCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCC-CCEEECcCCccc
Confidence 6655554 445555555666666666665555566666777777777777766444444 5677 888888877755
Q ss_pred cccCC---CCCCccEEeccCCCC
Q 047214 639 QSLPE---LPSCLEALDLTSCNM 658 (658)
Q Consensus 639 ~~i~~---~~~~L~~L~l~~~~~ 658 (658)
..+|. .+++|+.|++++|++
T Consensus 442 ~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 442 GRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred CccChhhccCCCCcEEECcCcee
Confidence 55553 467788888888763
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.87 E-value=2.9e-24 Score=216.78 Aligned_cols=278 Identities=21% Similarity=0.295 Sum_probs=183.1
Q ss_pred CcceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCC
Q 047214 359 TDAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTL 438 (658)
Q Consensus 359 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~l 438 (658)
...++++.+.-++.++..++.+.| ++..|.+|+++.|++ ..+|..+.+-. ++.+|+|++|+|+.+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL-------------~EvP~~LE~AK-n~iVLNLS~N~IetI 141 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQL-------------REVPTNLEYAK-NSIVLNLSYNNIETI 141 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhc-ccccceeeecchhhh-------------hhcchhhhhhc-CcEEEEcccCccccC
Confidence 455566666666666666666655 799999999999997 56788887776 999999999999999
Q ss_pred CCCC--CCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccc-cC-CCcCCCccEEEeecCC--cccccccccCC
Q 047214 439 PSNF--KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFID-MS-YPSAPNLETYLLDYTN--FACVPSSIQNF 512 (658)
Q Consensus 439 p~~~--~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~-~~-l~~l~~L~~L~l~~~~--~~~~~~~~~~l 512 (658)
|... ++..|-+||||+|.+..+|+.+..+.+|++|.+++|+..-. +- +..|+.|++|.+++++ +..+|.++..+
T Consensus 142 Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 142 PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh
Confidence 9876 89999999999999999999999999999999999852111 11 4566677777777733 34567777777
Q ss_pred CCCCEEeccCCCCCCcCCCCC-CCCCCcEEeccCCCCccccC---cccCCccEEEccccccccccccccCCCCCCEEecC
Q 047214 513 KYLSALSFEGCKSLRSFPSNF-RFVCPVTINFSSCVNLIEFP---QISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLR 588 (658)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~ 588 (658)
.+|..++++.| ++..+|... ++++|+.|++++|. ++.+. ..+.+|++|+++.|.++.+|..+..+++|+.|.+.
T Consensus 222 ~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 222 HNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred hhhhhcccccc-CCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhc
Confidence 77777777754 666666643 67777777777753 33332 23556667777777766666666666666666665
Q ss_pred CCcc-chhhhhhhcCCCCCcEEeccCCcCCccCC----CCCCcccEEeccCCccccccCC---CCCCccEEeccCC
Q 047214 589 DCKR-LKRISTRFCKLRSLVDLFLHGCLNLQSLP----ALPLCLKSLDLRDCKMLQSLPE---LPSCLEALDLTSC 656 (658)
Q Consensus 589 ~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~----~l~~~L~~L~l~~~~~l~~i~~---~~~~L~~L~l~~~ 656 (658)
+|+. ...+|..++.+..|+++...+| +++-+| .++. |+.|.++.|. +-++|+ .++.|+.|++..|
T Consensus 300 ~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC~k-L~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 300 NNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRCVK-LQKLKLDHNR-LITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred cCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhhHH-HHHhcccccc-eeechhhhhhcCCcceeeccCC
Confidence 5542 1334555555555555444442 233333 2344 4444444333 333343 2344444444443
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.7e-19 Score=212.41 Aligned_cols=253 Identities=29% Similarity=0.474 Sum_probs=150.0
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC-CCCCccEEEecCCC-ccccccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF-KPENLVELNLHFSK-VEQLWEG 463 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~-i~~l~~~ 463 (658)
.+||.|.+.++.+ ..+|..+. . .+|+.|++.++.++.+|..+ .+.+|+.|+|+++. +..+| .
T Consensus 589 ~~Lr~L~~~~~~l-------------~~lP~~f~-~-~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ 652 (1153)
T PLN03210 589 PKLRLLRWDKYPL-------------RCMPSNFR-P-ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-D 652 (1153)
T ss_pred cccEEEEecCCCC-------------CCCCCcCC-c-cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-c
Confidence 3566666666654 33444432 2 25666666666666555554 55666666665542 34444 2
Q ss_pred ccCCCCccEEeccCCCcccccC--CCcCCCccEEEeec-CCcccccccccCCCCCCEEeccCCCCCCcC-----------
Q 047214 464 KKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDY-TNFACVPSSIQNFKYLSALSFEGCKSLRSF----------- 529 (658)
Q Consensus 464 ~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----------- 529 (658)
+..+++|++|++++|..+..+| ++.+++|+.|++++ +.+..+|..+ ++++|+.|++++|..+..+
T Consensus 653 ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~ 731 (1153)
T PLN03210 653 LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLD 731 (1153)
T ss_pred cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeee
Confidence 4555566666666665555555 55566666666655 3445555433 4555555555555544444
Q ss_pred ---------CCCCCCCCCcEEeccCCCCc------ccc----CcccCCccEEEcccc-ccccccccccCCCCCCEEecCC
Q 047214 530 ---------PSNFRFVCPVTINFSSCVNL------IEF----PQISGKITRLYLGQS-AIEEVPSSIECLTDLEVLDLRD 589 (658)
Q Consensus 530 ---------~~~~~~~~L~~L~l~~~~~l------~~~----~~~~~~L~~L~l~~~-~i~~~~~~~~~l~~L~~L~l~~ 589 (658)
|....+++|++|.+.+|... ..+ ...+++|+.|++++| .+..+|..++++++|+.|++++
T Consensus 732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 43334444444444432210 000 012357788888876 4557888889999999999999
Q ss_pred CccchhhhhhhcCCCCCcEEeccCCcCCccCCC------------------------CCCcccEEeccCCccccccCC--
Q 047214 590 CKRLKRISTRFCKLRSLVDLFLHGCLNLQSLPA------------------------LPLCLKSLDLRDCKMLQSLPE-- 643 (658)
Q Consensus 590 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~------------------------l~~~L~~L~l~~~~~l~~i~~-- 643 (658)
|..+..+|... .+++|+.|++++|..++.+|. +++ |+.|++++|+.++.+|.
T Consensus 812 C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~-L~~L~L~~C~~L~~l~~~~ 889 (1153)
T PLN03210 812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSN-LSFLDMNGCNNLQRVSLNI 889 (1153)
T ss_pred CCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCC-CCEEECCCCCCcCccCccc
Confidence 98888888755 688899999998887776653 344 56666666666666553
Q ss_pred -CCCCccEEeccCCC
Q 047214 644 -LPSCLEALDLTSCN 657 (658)
Q Consensus 644 -~~~~L~~L~l~~~~ 657 (658)
.+++|+.+++++|.
T Consensus 890 ~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 890 SKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccCCCeeecCCCc
Confidence 34456666666663
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=2.3e-21 Score=194.84 Aligned_cols=286 Identities=22% Similarity=0.249 Sum_probs=152.9
Q ss_pred ccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhccc----------C-ceecCCCCCCcccccceEEecccCC
Q 047214 367 LDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSD----------S-KVLLPDGLDYLPKNLRYLHWDKYPL 435 (658)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~----------~-~~~~p~~~~~l~~~L~~L~l~~~~l 435 (658)
+++++...-.++...|.++++|+.+++.+|.+...|...+... . ...-.+++..+| .|+.|+|+.|.|
T Consensus 83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~-alrslDLSrN~i 161 (873)
T KOG4194|consen 83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALP-ALRSLDLSRNLI 161 (873)
T ss_pred eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHh-hhhhhhhhhchh
Confidence 3444444455677788888888888888888744432111000 0 000112233333 444444444444
Q ss_pred CCCCCCC--CCCCccEEEecCCCccccccc-ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccc-ccc
Q 047214 436 RTLPSNF--KPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACV-PSS 508 (658)
Q Consensus 436 ~~lp~~~--~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~-~~~ 508 (658)
..+|... .-.++++|+|++|.|+.+... +..+.+|.+|.|+.| .++.+| |..+++|+.|++..|.+.-+ .-.
T Consensus 162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeeehhhh
Confidence 4444322 223455555555555544332 444555555555555 344444 44555555555555555433 223
Q ss_pred ccCCCCCCEEeccCCCCCCcCCCCC--CCCCCcEEeccCCCCccccCc----ccCCccEEEccccccccccc-cccCCCC
Q 047214 509 IQNFKYLSALSFEGCKSLRSFPSNF--RFVCPVTINFSSCVNLIEFPQ----ISGKITRLYLGQSAIEEVPS-SIECLTD 581 (658)
Q Consensus 509 ~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~~~~~-~~~~l~~ 581 (658)
|.++++|+.|.+..| .+..+.++. .+.+++.|++..|. +..... .+..|+.|++++|.|..+.. .++..++
T Consensus 241 FqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~-l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk 318 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNR-LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK 318 (873)
T ss_pred hcCchhhhhhhhhhc-CcccccCcceeeecccceeecccch-hhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence 455555555555554 344444422 55666666665542 222222 23455566666666665432 3555666
Q ss_pred CCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC-----CCCCcccEEeccCCccccccCC------CCCCccE
Q 047214 582 LEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP-----ALPLCLKSLDLRDCKMLQSLPE------LPSCLEA 650 (658)
Q Consensus 582 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-----~l~~~L~~L~l~~~~~l~~i~~------~~~~L~~ 650 (658)
|+.|++++|....--+.++..+..|++|++++|. +..+. ++.+ |++||+++|...-.|-+ ++++|+.
T Consensus 319 L~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lss-L~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 319 LKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSS-LHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhh-hhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 7777777666433334456666677777776654 33332 4666 88888888874333321 5778888
Q ss_pred EeccCCCC
Q 047214 651 LDLTSCNM 658 (658)
Q Consensus 651 L~l~~~~~ 658 (658)
|.+.||++
T Consensus 397 L~l~gNql 404 (873)
T KOG4194|consen 397 LRLTGNQL 404 (873)
T ss_pred eeecCcee
Confidence 88888875
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.79 E-value=1.7e-21 Score=196.88 Aligned_cols=260 Identities=21% Similarity=0.310 Sum_probs=140.3
Q ss_pred hhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCC--CCCCCC-CCCCccEEEecCCC
Q 047214 380 GAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLR--TLPSNF-KPENLVELNLHFSK 456 (658)
Q Consensus 380 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~~~ 456 (658)
+.++++.+|..|.++.|++ .++-..+..+| .||.+.++.|+++ .+|+.+ .+..|.+||||.|+
T Consensus 49 eEL~~lqkLEHLs~~HN~L-------------~~vhGELs~Lp-~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq 114 (1255)
T KOG0444|consen 49 EELSRLQKLEHLSMAHNQL-------------ISVHGELSDLP-RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ 114 (1255)
T ss_pred HHHHHHhhhhhhhhhhhhh-------------Hhhhhhhccch-hhHHHhhhccccccCCCCchhcccccceeeecchhh
Confidence 4444555555555555554 23444455555 5555555555554 444443 55555555555555
Q ss_pred cccccccccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCC--------
Q 047214 457 VEQLWEGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKS-------- 525 (658)
Q Consensus 457 i~~l~~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------- 525 (658)
+.+.|..+...+++-.|++++| .+..+| +-+++.|-.||+++|.++.+|+-+..+..|++|.+++|+.
T Consensus 115 L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQL 193 (1255)
T KOG0444|consen 115 LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQL 193 (1255)
T ss_pred hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcC
Confidence 5555555555555555555555 444555 4455555555555555555555555555555555555431
Q ss_pred -----------------CCcCCCCC-CCCCCcEEeccCCCCccccCc---ccCCccEEEccccccccccccccCCCCCCE
Q 047214 526 -----------------LRSFPSNF-RFVCPVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEEVPSSIECLTDLEV 584 (658)
Q Consensus 526 -----------------l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~ 584 (658)
+..+|... .+.+|..++++.| ++..+|. ...+|++|+|++|.|+++........+|++
T Consensus 194 PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEt 272 (1255)
T KOG0444|consen 194 PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLET 272 (1255)
T ss_pred ccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc-CCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhh
Confidence 22233322 3444455555443 2333332 234455555555555555444445555555
Q ss_pred EecCCCccchhhhhhhcCCCCCcEEeccCCc-CCccCC----CCCCcccEEeccCCccccccCCCC---CCccEEeccCC
Q 047214 585 LDLRDCKRLKRISTRFCKLRSLVDLFLHGCL-NLQSLP----ALPLCLKSLDLRDCKMLQSLPELP---SCLEALDLTSC 656 (658)
Q Consensus 585 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~l~~l~----~l~~~L~~L~l~~~~~l~~i~~~~---~~L~~L~l~~~ 656 (658)
|++|.|. +..+|..++.+++|+.|.+.+|. ..+-+| .+.. |+.+...+|. +.-+|+++ ..|+.|.|+.|
T Consensus 273 LNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~-Levf~aanN~-LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 273 LNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ-LEVFHAANNK-LELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhh-hHHHHhhccc-cccCchhhhhhHHHHHhccccc
Confidence 5555554 45566666777777777666654 344455 3555 6666666555 66777643 34777877777
Q ss_pred CC
Q 047214 657 NM 658 (658)
Q Consensus 657 ~~ 658 (658)
.+
T Consensus 350 rL 351 (1255)
T KOG0444|consen 350 RL 351 (1255)
T ss_pred ce
Confidence 53
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=1.7e-18 Score=189.37 Aligned_cols=233 Identities=23% Similarity=0.289 Sum_probs=186.7
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccccccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKK 465 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~ 465 (658)
.+|+.|.+.+|.+. .+|. ++.+|++|++++|.++.+|.. ..+|+.|++++|.+..+|..
T Consensus 222 ~~L~~L~L~~N~Lt-------------~LP~----lp~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~l-- 280 (788)
T PRK15387 222 AHITTLVIPDNNLT-------------SLPA----LPPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPAL-- 280 (788)
T ss_pred cCCCEEEccCCcCC-------------CCCC----CCCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhc--
Confidence 47999999999973 3453 234999999999999999864 46899999999999888763
Q ss_pred CCCCccEEeccCCCcccccCCCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccC
Q 047214 466 EAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSS 545 (658)
Q Consensus 466 ~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 545 (658)
+.+|+.|++++| .+..+| ..+++|+.|++++|++..+|.. ..+|+.|.+++| .++.+|.. ..+|+.|++++
T Consensus 281 -p~~L~~L~Ls~N-~Lt~LP-~~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N-~L~~LP~l--p~~Lq~LdLS~ 351 (788)
T PRK15387 281 -PSGLCKLWIFGN-QLTSLP-VLPPGLQELSVSDNQLASLPAL---PSELCKLWAYNN-QLTSLPTL--PSGLQELSVSD 351 (788)
T ss_pred -hhhcCEEECcCC-cccccc-ccccccceeECCCCccccCCCC---cccccccccccC-cccccccc--ccccceEecCC
Confidence 357889999998 566777 1247899999999999888753 246788889887 67777752 35899999998
Q ss_pred CCCccccCcccCCccEEEccccccccccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCCCCCC
Q 047214 546 CVNLIEFPQISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLPALPL 625 (658)
Q Consensus 546 ~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~l~~ 625 (658)
| .+..+|..+.+|..|++++|.+..+|.. .++|+.|++++|. +..+|.. +++|+.|++++|. +..+|.+|.
T Consensus 352 N-~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l---~s~L~~LdLS~N~-LssIP~l~~ 422 (788)
T PRK15387 352 N-QLASLPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNR-LTSLPVL---PSELKELMVSGNR-LTSLPMLPS 422 (788)
T ss_pred C-ccCCCCCCCcccceehhhccccccCccc---ccccceEEecCCc-ccCCCCc---ccCCCEEEccCCc-CCCCCcchh
Confidence 6 5778888888999999999999988863 4679999999987 4556643 4689999999976 788887765
Q ss_pred cccEEeccCCccccccCC---CCCCccEEeccCCCC
Q 047214 626 CLKSLDLRDCKMLQSLPE---LPSCLEALDLTSCNM 658 (658)
Q Consensus 626 ~L~~L~l~~~~~l~~i~~---~~~~L~~L~l~~~~~ 658 (658)
+|+.|++++|. ++.+|. .+++|+.|+|++|++
T Consensus 423 ~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 423 GLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhhhhccCc-ccccChHHhhccCCCeEECCCCCC
Confidence 69999999888 778886 467899999999986
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=7e-18 Score=184.56 Aligned_cols=233 Identities=22% Similarity=0.247 Sum_probs=189.8
Q ss_pred CCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccC
Q 047214 387 NLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKE 466 (658)
Q Consensus 387 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~ 466 (658)
.-..|+++++.+ ..+|..+. .+|+.|.+.+|+++.+|.. +++|++|++++|+++.+|..
T Consensus 202 ~~~~LdLs~~~L-------------tsLP~~l~---~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l--- 260 (788)
T PRK15387 202 GNAVLNVGESGL-------------TTLPDCLP---AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL--- 260 (788)
T ss_pred CCcEEEcCCCCC-------------CcCCcchh---cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---
Confidence 456789999987 35777664 3899999999999999974 57999999999999999853
Q ss_pred CCCccEEeccCCCcccccCCCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCC
Q 047214 467 AFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSC 546 (658)
Q Consensus 467 l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 546 (658)
.++|+.|++++| .+..+| ..+++|+.|++.+|.+..+|.. +++|+.|++++| .+..+|.. ..+|+.|.+++|
T Consensus 261 p~sL~~L~Ls~N-~L~~Lp-~lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N 332 (788)
T PRK15387 261 PPGLLELSIFSN-PLTHLP-ALPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL--PSELCKLWAYNN 332 (788)
T ss_pred ccccceeeccCC-chhhhh-hchhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC--cccccccccccC
Confidence 468999999998 466666 1235788999999999988863 578999999998 67777763 357888999886
Q ss_pred CCccccCcccCCccEEEccccccccccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCCCCCCc
Q 047214 547 VNLIEFPQISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLPALPLC 626 (658)
Q Consensus 547 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~l~~~ 626 (658)
.+..+|..+.+|+.|++++|.++.+|.. .++|+.|++++|. +..+|.. +.+|+.|++++|. +..+|..+++
T Consensus 333 -~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~-L~~LP~l---~~~L~~LdLs~N~-Lt~LP~l~s~ 403 (788)
T PRK15387 333 -QLTSLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNR-LTSLPAL---PSGLKELIVSGNR-LTSLPVLPSE 403 (788)
T ss_pred -ccccccccccccceEecCCCccCCCCCC---Ccccceehhhccc-cccCccc---ccccceEEecCCc-ccCCCCcccC
Confidence 5677888778999999999999999873 4678899999886 4566653 4689999999975 7788876656
Q ss_pred ccEEeccCCccccccCCCCCCccEEeccCCCC
Q 047214 627 LKSLDLRDCKMLQSLPELPSCLEALDLTSCNM 658 (658)
Q Consensus 627 L~~L~l~~~~~l~~i~~~~~~L~~L~l~~~~~ 658 (658)
|+.|++++|. ++.+|..+.+|+.|++++|.+
T Consensus 404 L~~LdLS~N~-LssIP~l~~~L~~L~Ls~NqL 434 (788)
T PRK15387 404 LKELMVSGNR-LTSLPMLPSGLLSLSVYRNQL 434 (788)
T ss_pred CCEEEccCCc-CCCCCcchhhhhhhhhccCcc
Confidence 9999999998 778998888899999999875
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=7.5e-18 Score=185.59 Aligned_cols=219 Identities=20% Similarity=0.314 Sum_probs=131.7
Q ss_pred ccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccCCCcCCCccEEEeecCCcc
Q 047214 424 NLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFA 503 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 503 (658)
+++.|++++|.++.+|.... .+|+.|++++|+++.+|..+. .+|+.|++++| .+..+|-.-.++|+.|++++|++.
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLPSALQSLDLFHNKIS 275 (754)
T ss_pred CCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHhCCCCEEECcCCccC
Confidence 66677777777776665542 467777777776666665432 35667777766 344555111245677777776666
Q ss_pred cccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCc-ccCCccEEEccccccccccccccCCCCC
Q 047214 504 CVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQ-ISGKITRLYLGQSAIEEVPSSIECLTDL 582 (658)
Q Consensus 504 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~l~~L 582 (658)
.+|..+. ++|++|++++| .++.+|... .++|+.|++++|. +..+|. .+.+|+.|++++|.++.+|..+ .++|
T Consensus 276 ~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l-p~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l--~~sL 348 (754)
T PRK15370 276 CLPENLP--EELRYLSVYDN-SIRTLPAHL-PSGITHLNVQSNS-LTALPETLPPGLKTLEAGENALTSLPASL--PPEL 348 (754)
T ss_pred ccccccC--CCCcEEECCCC-ccccCcccc-hhhHHHHHhcCCc-cccCCccccccceeccccCCccccCChhh--cCcc
Confidence 6665443 46777777766 455555432 2356666666643 444443 3456777777777777666543 2577
Q ss_pred CEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC-CCCCcccEEeccCCccccccCCC-------CCCccEEecc
Q 047214 583 EVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP-ALPLCLKSLDLRDCKMLQSLPEL-------PSCLEALDLT 654 (658)
Q Consensus 583 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~l~~~L~~L~l~~~~~l~~i~~~-------~~~L~~L~l~ 654 (658)
+.|++++|. +..+|..+ .++|+.|++++|. +..+| .++.+|+.|++++|. +..+|.. .+++..|++.
T Consensus 349 ~~L~Ls~N~-L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 349 QVLDVSKNQ-ITVLPETL--PPTITTLDVSRNA-LTNLPENLPAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred cEEECCCCC-CCcCChhh--cCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEee
Confidence 777777765 34455443 3567777777764 55565 444347777777765 4555541 2456677777
Q ss_pred CCCC
Q 047214 655 SCNM 658 (658)
Q Consensus 655 ~~~~ 658 (658)
+|++
T Consensus 424 ~Npl 427 (754)
T PRK15370 424 YNPF 427 (754)
T ss_pred CCCc
Confidence 7764
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.73 E-value=4.6e-20 Score=177.72 Aligned_cols=253 Identities=25% Similarity=0.293 Sum_probs=178.0
Q ss_pred CCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccc
Q 047214 385 MSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGK 464 (658)
Q Consensus 385 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~ 464 (658)
|+.|+.|+...|.+ ..+|..++.+. .|.-|++.+|++..+|..-+|.-|..|.++.|.|+-+|...
T Consensus 182 m~~L~~ld~~~N~L-------------~tlP~~lg~l~-~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~ 247 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLL-------------ETLPPELGGLE-SLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEH 247 (565)
T ss_pred HHHHHhcccchhhh-------------hcCChhhcchh-hhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHH
Confidence 77777777777775 66889998888 89999999999999996668999999999999999998884
Q ss_pred c-CCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCC--------------
Q 047214 465 K-EAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLR-------------- 527 (658)
Q Consensus 465 ~-~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-------------- 527 (658)
. ++.+|.+|++.+| .+.++| +..+.+|+.||+++|.+..+|.+++++ .|+.|.+.||+.-+
T Consensus 248 ~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vL 325 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVL 325 (565)
T ss_pred hcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHH
Confidence 4 8999999999998 788888 888999999999999999999999999 88888887663100
Q ss_pred ----------------------------cCCCCCCCCCCcEEeccCCCCccccC--------------------------
Q 047214 528 ----------------------------SFPSNFRFVCPVTINFSSCVNLIEFP-------------------------- 553 (658)
Q Consensus 528 ----------------------------~~~~~~~~~~L~~L~l~~~~~l~~~~-------------------------- 553 (658)
.+|+...+.+.+.|++++- .++..|
T Consensus 326 KyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEVfea~~~~~Vt~VnfskNqL~elP 404 (565)
T KOG0472|consen 326 KYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEVFEAAKSEIVTSVNFSKNQLCELP 404 (565)
T ss_pred HHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHHHHHhhhcceEEEecccchHhhhh
Confidence 0011111233334444331 222222
Q ss_pred cccCCcc----EEEccccccccccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC--------
Q 047214 554 QISGKIT----RLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP-------- 621 (658)
Q Consensus 554 ~~~~~L~----~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-------- 621 (658)
.....+. .+.+++|.++-+|..++.+++|..|++++|. +..+|..++.+-.|+.|+++.|. +..+|
T Consensus 405 k~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~~~y~lq~ 482 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNR-FRMLPECLYELQT 482 (565)
T ss_pred hhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccc-cccchHHHhhHHH
Confidence 1111111 2233334444444445667777777777665 66777777777777777777653 33333
Q ss_pred --------------------CCCCcccEEeccCCccccccCC---CCCCccEEeccCCCC
Q 047214 622 --------------------ALPLCLKSLDLRDCKMLQSLPE---LPSCLEALDLTSCNM 658 (658)
Q Consensus 622 --------------------~l~~~L~~L~l~~~~~l~~i~~---~~~~L~~L~l~~~~~ 658 (658)
.|.+ |..||+.+|. +..+|. .+.+|++|++.||+|
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~n-L~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRN-LTTLDLQNND-LQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred HHHHHhccccccccChHHhhhhhh-cceeccCCCc-hhhCChhhccccceeEEEecCCcc
Confidence 2566 8999998777 778885 678899999999986
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=3.8e-20 Score=178.31 Aligned_cols=193 Identities=20% Similarity=0.287 Sum_probs=130.3
Q ss_pred hhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC-CCCCccEEEecCCCcc
Q 047214 380 GAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF-KPENLVELNLHFSKVE 458 (658)
Q Consensus 380 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~ 458 (658)
.......+|+.|+++.|.+ ..+|++++.+. .+..|+..+|.+.++|..+ ++..|..|++.+|++.
T Consensus 108 ~~i~s~~~l~~l~~s~n~~-------------~el~~~i~~~~-~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~ 173 (565)
T KOG0472|consen 108 EQIGSLISLVKLDCSSNEL-------------KELPDSIGRLL-DLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK 173 (565)
T ss_pred HHHhhhhhhhhhhccccce-------------eecCchHHHHh-hhhhhhccccccccCchHHHHHHHHHHhhccccchh
Confidence 3344455666666666664 45666666666 6666666777777777665 6667777777777777
Q ss_pred cccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCC--C
Q 047214 459 QLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNF--R 534 (658)
Q Consensus 459 ~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~ 534 (658)
.+|+..-.++.|++|+...| .++.+| ++.|.+|+-|++..|++..+| +|.+|..|+.|+++.| ++..+|... +
T Consensus 174 ~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~ 250 (565)
T KOG0472|consen 174 ALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKH 250 (565)
T ss_pred hCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcc
Confidence 66666555677777776666 566666 777777777777777777776 5677777777777655 566666533 5
Q ss_pred CCCCcEEeccCCCCccccCcc---cCCccEEEccccccccccccccCCCCCCEEecCCCc
Q 047214 535 FVCPVTINFSSCVNLIEFPQI---SGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCK 591 (658)
Q Consensus 535 ~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~ 591 (658)
++++..|++.++ ++++.|.. ..+|++|++++|.|+.+|..++++ .|++|.+.||+
T Consensus 251 L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 251 LNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence 777777777774 46666653 356667777777777777777777 77777777775
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=2.6e-16 Score=173.55 Aligned_cols=219 Identities=19% Similarity=0.291 Sum_probs=177.1
Q ss_pred ccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccCCCcCCCccEEEeecCCcc
Q 047214 424 NLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFA 503 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 503 (658)
+...|++++++++.+|..+. .+|+.|+|++|+++.+|..+. .+|++|++++| .+..+|-+-.++|+.|++++|.+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP-EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLPDTIQEMELSINRIT 254 (754)
T ss_pred CceEEEeCCCCcCcCCcccc-cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhhccccEEECcCCccC
Confidence 56778888888998887653 589999999999999998764 58999999998 567788223457999999999999
Q ss_pred cccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcc-cCCccEEEccccccccccccccCCCCC
Q 047214 504 CVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQI-SGKITRLYLGQSAIEEVPSSIECLTDL 582 (658)
Q Consensus 504 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~L~~L~l~~~~i~~~~~~~~~l~~L 582 (658)
.+|..+. ++|+.|++++| .+..+|... .++|+.|++++| .+..+|.. +.+|+.|++++|.++.+|..+ .++|
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l-~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l--~~sL 327 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHN-KISCLPENL-PEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETL--PPGL 327 (754)
T ss_pred cCChhHh--CCCCEEECcCC-ccCcccccc-CCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccc--cccc
Confidence 9987664 58999999976 677888754 368999999997 57777753 457899999999999888754 4789
Q ss_pred CEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC-CCCCcccEEeccCCccccccCC-CCCCccEEeccCCCC
Q 047214 583 EVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP-ALPLCLKSLDLRDCKMLQSLPE-LPSCLEALDLTSCNM 658 (658)
Q Consensus 583 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-~l~~~L~~L~l~~~~~l~~i~~-~~~~L~~L~l~~~~~ 658 (658)
+.|++++|. +..+|..+ +++|+.|++++|. +..+| .+|.+|++|++++|. +..+|. .+.+|+.|++++|++
T Consensus 328 ~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~-L~~LP~~lp~~L~~LdLs~N~-Lt~LP~~l~~sL~~LdLs~N~L 400 (754)
T PRK15370 328 KTLEAGENA-LTSLPASL--PPELQVLDVSKNQ-ITVLPETLPPTITTLDVSRNA-LTNLPENLPAALQIMQASRNNL 400 (754)
T ss_pred eeccccCCc-cccCChhh--cCcccEEECCCCC-CCcCChhhcCCcCEEECCCCc-CCCCCHhHHHHHHHHhhccCCc
Confidence 999999987 55677655 3799999999975 77777 455459999999997 778886 445799999999875
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.64 E-value=1.6e-17 Score=176.29 Aligned_cols=229 Identities=27% Similarity=0.325 Sum_probs=154.5
Q ss_pred cccceEEecccCCCCCCCCC-CCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeec
Q 047214 423 KNLRYLHWDKYPLRTLPSNF-KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDY 499 (658)
Q Consensus 423 ~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~ 499 (658)
.+|++++++++.+..+|+++ .+.+|+.|+...|.+..+|..+....+|+.|.+.+| .+..+| ..+++.|++|++..
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh
Confidence 36666666666666666444 666666666666666666666666666666666666 444555 44566666666666
Q ss_pred CCcccccccccC-CC-CCCEEeccCCCCCCcCCCCC--CCCCCcEEeccCCCCcc-ccC--cccCCccEEEccccccccc
Q 047214 500 TNFACVPSSIQN-FK-YLSALSFEGCKSLRSFPSNF--RFVCPVTINFSSCVNLI-EFP--QISGKITRLYLGQSAIEEV 572 (658)
Q Consensus 500 ~~~~~~~~~~~~-l~-~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~-~~~--~~~~~L~~L~l~~~~i~~~ 572 (658)
|++..+|+.+.. .. +|+.|+.+.+ .+..+|... .++.|+.|.+.+|.--. .+| ..+.+|+.|+|++|.+..+
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n-~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f 398 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSN-KLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF 398 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhc-cccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence 666666653211 11 1444444432 344444322 45566666666653222 223 3467899999999999999
Q ss_pred ccc-ccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC---CCCCcccEEeccCCcccc--ccCC-CC
Q 047214 573 PSS-IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP---ALPLCLKSLDLRDCKMLQ--SLPE-LP 645 (658)
Q Consensus 573 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~---~l~~~L~~L~l~~~~~l~--~i~~-~~ 645 (658)
|.. +.++..|+.|++|||+ +..+|..+..++.|++|...+|. +..+| .+|. |+.+|++.|. ++ .+|. .+
T Consensus 399 pas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~q-L~~lDlS~N~-L~~~~l~~~~p 474 (1081)
T KOG0618|consen 399 PASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQ-LKVLDLSCNN-LSEVTLPEALP 474 (1081)
T ss_pred CHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCc-ceEEecccch-hhhhhhhhhCC
Confidence 886 7889999999999988 88899999999999999988854 77777 6788 9999999776 44 3444 34
Q ss_pred -CCccEEeccCCC
Q 047214 646 -SCLEALDLTSCN 657 (658)
Q Consensus 646 -~~L~~L~l~~~~ 657 (658)
++|++||++||.
T Consensus 475 ~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNT 487 (1081)
T ss_pred CcccceeeccCCc
Confidence 789999999985
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.58 E-value=2e-16 Score=168.00 Aligned_cols=222 Identities=18% Similarity=0.153 Sum_probs=147.0
Q ss_pred cCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC-CCCCccEEEecCC
Q 047214 377 LDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF-KPENLVELNLHFS 455 (658)
Q Consensus 377 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~ 455 (658)
.+.++..+.-.|+.|++++|.+ ..+|..+..++ +|+.|.++.|.+..+|... .+++|++|+|.+|
T Consensus 36 ~pl~~~~~~v~L~~l~lsnn~~-------------~~fp~~it~l~-~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n 101 (1081)
T KOG0618|consen 36 RPLEFVEKRVKLKSLDLSNNQI-------------SSFPIQITLLS-HLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN 101 (1081)
T ss_pred CchHHhhheeeeEEeecccccc-------------ccCCchhhhHH-HHhhcccchhhHhhCchhhhhhhcchhheeccc
Confidence 3345555555588899998886 55777777777 8888888888888888666 7888888888888
Q ss_pred CcccccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecC-Cccc-------------------ccccccCCC
Q 047214 456 KVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYT-NFAC-------------------VPSSIQNFK 513 (658)
Q Consensus 456 ~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~-~~~~-------------------~~~~~~~l~ 513 (658)
....+|..+..+++|+.|++++| .+..+| +..++.++.+..++| ++.. ++..+..+.
T Consensus 102 ~l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~ 180 (1081)
T KOG0618|consen 102 RLQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLT 180 (1081)
T ss_pred hhhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhh
Confidence 88888888888888888888888 455555 666666666666654 1111 222222222
Q ss_pred CCCEEeccCCCCC----------CcCCC--------CCCCCCCcEEeccCCCCccccCc-ccCCccEEEccccccccccc
Q 047214 514 YLSALSFEGCKSL----------RSFPS--------NFRFVCPVTINFSSCVNLIEFPQ-ISGKITRLYLGQSAIEEVPS 574 (658)
Q Consensus 514 ~L~~L~l~~~~~l----------~~~~~--------~~~~~~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~i~~~~~ 574 (658)
. .|++..|... ..+-- ....++|+.|...+|+..+..+. .+.+|++++++.|.++.+|.
T Consensus 181 ~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~ 258 (1081)
T KOG0618|consen 181 H--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPE 258 (1081)
T ss_pred e--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchH
Confidence 2 3555554322 11100 01235666666666654443333 34678899999999999998
Q ss_pred cccCCCCCCEEecCCCcc----------------------chhhhhhhcCCCCCcEEeccCCc
Q 047214 575 SIECLTDLEVLDLRDCKR----------------------LKRISTRFCKLRSLVDLFLHGCL 615 (658)
Q Consensus 575 ~~~~l~~L~~L~l~~~~~----------------------~~~~~~~~~~l~~L~~L~l~~~~ 615 (658)
|+..+++|+.++..+|.. +..+|....++++|++|++..|.
T Consensus 259 wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 259 WIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN 321 (1081)
T ss_pred HHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc
Confidence 888899999988887653 12333444567788888887644
No 19
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.55 E-value=1.6e-13 Score=160.89 Aligned_cols=289 Identities=14% Similarity=0.154 Sum_probs=182.2
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc-ccchh-hH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS-ETGGG-KI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~-~~ 100 (658)
||.....+|-|..-++.+.+ . .+.+++.|+|++|.||||++.++++.. +.++|+. +.... +...+ ..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~----~--~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~d~~~~~f~~~ 77 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSG----A--NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDESDNQPERFASY 77 (903)
T ss_pred CCCCccccCcchHHHHHHhc----c--cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCcccCCHHHHHHH
Confidence 66677889999966655543 1 457899999999999999999988642 3688987 54333 22222 22
Q ss_pred hHHHhhhcC-C--------------CC----chhHHHHhc--CcceEEEEeCCCCch--hhhhhhccc-CCCCCCCEEEE
Q 047214 101 LSEKLEVAG-A--------------NI----PHFTKERVR--RMKVLIVLDDVNEVG--QLEGLIGEL-DQFGPGSRIVV 156 (658)
Q Consensus 101 l~~~l~~~~-~--------------~~----~~~l~~~l~--~~~~LlvlDdv~~~~--~~~~l~~~l-~~~~~~~~ilv 156 (658)
+...++... . .. ...+...+. +.+++|||||++... ....++..+ .....+..+|+
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 222222100 0 01 111222222 578999999997754 223333333 33345678889
Q ss_pred EecchHHHH--hhcCCCceEEcC----CCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhcccccc
Q 047214 157 TTRDKRVLE--KFRGEKKIYRVN----GLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCLK 230 (658)
Q Consensus 157 ttR~~~~~~--~~~~~~~~~~l~----~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~ 230 (658)
|||...... ..........+. +|+.+|+.+||....+.. -..+.+.+|++.|+|+|+++..++..++..
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 999853211 111122344555 999999999998765322 123457899999999999999988776443
Q ss_pred cHHHHHHHHHHHhhcCCcchhhHHhh-hhhhccCCChhhhchhceeeecCCCCCHHHHHHHhcc-ccccchHHhhhccCc
Q 047214 231 RKSHWENLLHDLNRICESDIHDIYKK-LKITFDELTPRVQSIFLDIACFFEGEDKDFVARILDD-SESDGLDVLIDKSLI 308 (658)
Q Consensus 231 ~~~~w~~~~~~l~~~~~~~~~~l~~~-l~~s~~~L~~~~~~~l~~~a~fp~~~~~~~l~~~~~~-~~~~~l~~L~~~~ll 308 (658)
... .......+....... +... ....++.||++.|++++..|+++ .++.+.+..+... +....+..|.+.+++
T Consensus 233 ~~~-~~~~~~~~~~~~~~~---~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~l~~~~l~ 307 (903)
T PRK04841 233 NSS-LHDSARRLAGINASH---LSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEENGQMRLEELERQGLF 307 (903)
T ss_pred CCc-hhhhhHhhcCCCchh---HHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCCcHHHHHHHHHHCCCe
Confidence 210 011111111111112 2333 33347899999999999999987 6776655555544 677889999999996
Q ss_pred eee----CCeEEeehHHHHHHHHHhhhc
Q 047214 309 SIS----GNCLQMHDLLQEMGQQIVRQE 332 (658)
Q Consensus 309 ~~~----~~~~~~H~~v~~~~~~~~~~~ 332 (658)
... ..+|++|++++++++.....+
T Consensus 308 ~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 308 IQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred eEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 543 347999999999999877444
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=4.1e-15 Score=143.71 Aligned_cols=236 Identities=20% Similarity=0.250 Sum_probs=171.1
Q ss_pred CcccccceEEecccCCCCCCCCC--CCCCccEEEecCCCcccc-cccccCCCCccEEeccCCCcccccC---CCcCCCcc
Q 047214 420 YLPKNLRYLHWDKYPLRTLPSNF--KPENLVELNLHFSKVEQL-WEGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLE 493 (658)
Q Consensus 420 ~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~ 493 (658)
++|.....+.|..|+|+.+|+.. .+++|+.|||+.|.|+.| |..++++.+|..|-+.+++.++++| |+++..|+
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 44557888999999999999886 899999999999999976 5569999999998888877899999 99999999
Q ss_pred EEEeecCCccccc-ccccCCCCCCEEeccCCCCCCcCCCCC--CCCCCcEEeccCCCCc------------cccCcccC-
Q 047214 494 TYLLDYTNFACVP-SSIQNFKYLSALSFEGCKSLRSFPSNF--RFVCPVTINFSSCVNL------------IEFPQISG- 557 (658)
Q Consensus 494 ~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l------------~~~~~~~~- 557 (658)
.|.+.-|++.+++ ..+..+++|..|.+.+| .+..++... .+..++.+++.-++.. ...|..++
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 9988888888775 46888899988888886 555555522 5666666666544311 01111111
Q ss_pred ------------------------Ccc----EEEccccccccccc-cccCCCCCCEEecCCCccchhhhhhhcCCCCCcE
Q 047214 558 ------------------------KIT----RLYLGQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVD 608 (658)
Q Consensus 558 ------------------------~L~----~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 608 (658)
+++ .+...++.....|. .|..+++|++|++++|+....-+.+|.+..++++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 111 11111222223333 3789999999999999866666778999999999
Q ss_pred EeccCCcCCccCC-----CCCCcccEEeccCCccccccCCC---CCCccEEeccCCCC
Q 047214 609 LFLHGCLNLQSLP-----ALPLCLKSLDLRDCKMLQSLPEL---PSCLEALDLTSCNM 658 (658)
Q Consensus 609 L~l~~~~~l~~l~-----~l~~~L~~L~l~~~~~l~~i~~~---~~~L~~L~l~~~~~ 658 (658)
|.+..|. ++.+. ++.. |+.|++.+|..-.--|.. ..+|.+|++-.|++
T Consensus 303 L~L~~N~-l~~v~~~~f~~ls~-L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 303 LYLTRNK-LEFVSSGMFQGLSG-LKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhcCcch-HHHHHHHhhhcccc-ceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 9999865 55544 6777 999999999844444443 34688888887764
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.2e-15 Score=130.50 Aligned_cols=151 Identities=21% Similarity=0.359 Sum_probs=87.8
Q ss_pred ccceEEecccCCCCCCCCC-CCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecC
Q 047214 424 NLRYLHWDKYPLRTLPSNF-KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYT 500 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~ 500 (658)
++..|.|++|+++.+|+.+ .+.+|++|++++|+|+++|..++.+++|++|++.-| .+..+| |+.+|.|++||++.|
T Consensus 34 ~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhcccc
Confidence 5556666666666666666 666666666666666666666666666666666655 344455 666666666666665
Q ss_pred Cc--ccccccccCCCCCCEEeccCCCCCCcCCCCC-CCCCCcEEeccCCCCccccCcccC---CccEEEccccccccccc
Q 047214 501 NF--ACVPSSIQNFKYLSALSFEGCKSLRSFPSNF-RFVCPVTINFSSCVNLIEFPQISG---KITRLYLGQSAIEEVPS 574 (658)
Q Consensus 501 ~~--~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~---~L~~L~l~~~~i~~~~~ 574 (658)
++ ..+|..|..|..|+-|++++| ....+|... ++++|+.|.+.++ .+-++|...+ .|+.|++.+|.+.-+|.
T Consensus 113 nl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred ccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhcccceeeecCh
Confidence 55 235555666666666666665 344444432 5556666555553 2334444333 23355566666666655
Q ss_pred ccc
Q 047214 575 SIE 577 (658)
Q Consensus 575 ~~~ 577 (658)
.++
T Consensus 191 el~ 193 (264)
T KOG0617|consen 191 ELA 193 (264)
T ss_pred hhh
Confidence 443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.46 E-value=2e-15 Score=129.18 Aligned_cols=165 Identities=27% Similarity=0.422 Sum_probs=129.2
Q ss_pred CCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcccccccccC
Q 047214 434 PLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFACVPSSIQN 511 (658)
Q Consensus 434 ~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~ 511 (658)
++.++|..+.+.+++.|-||.|+++.+|+.+..+.+|+.|++++| .+.++| ++.++.|+.|++..|.+..+|.+|+.
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 345677777888999999999999999999999999999998887 678888 88888888888888888888888888
Q ss_pred CCCCCEEeccCCCCC-CcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEccccccccccccccCCCCCCEEecCCC
Q 047214 512 FKYLSALSFEGCKSL-RSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDC 590 (658)
Q Consensus 512 l~~L~~L~l~~~~~l-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~ 590 (658)
+|-|+.|++..|+.. ..+|.++ -....|+.|+++.|.+.-+|..++.+++|+.|.+..|
T Consensus 101 ~p~levldltynnl~e~~lpgnf--------------------f~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNF--------------------FYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred CchhhhhhccccccccccCCcch--------------------hHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 888888888765311 1122211 0123455677788888888888899999999999887
Q ss_pred ccchhhhhhhcCCCCCcEEeccCCcCCccCC
Q 047214 591 KRLKRISTRFCKLRSLVDLFLHGCLNLQSLP 621 (658)
Q Consensus 591 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 621 (658)
. +-.+|..++.+..|++|++.+|. ++.+|
T Consensus 161 d-ll~lpkeig~lt~lrelhiqgnr-l~vlp 189 (264)
T KOG0617|consen 161 D-LLSLPKEIGDLTRLRELHIQGNR-LTVLP 189 (264)
T ss_pred c-hhhCcHHHHHHHHHHHHhcccce-eeecC
Confidence 6 56788888889999999999865 66665
No 23
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.39 E-value=5.6e-12 Score=134.39 Aligned_cols=292 Identities=15% Similarity=0.175 Sum_probs=186.4
Q ss_pred cCCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccc-cccchh-h
Q 047214 22 VATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKN-SETGGG-K 99 (658)
Q Consensus 22 ~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~-~ 99 (658)
.+|......|-|..-++.+.. . .+.|.+.|..|+|.||||++.++++. ...-..+.|.+ +++. .+...+ .
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~----~--~~~RL~li~APAGfGKttl~aq~~~~-~~~~~~v~Wls-lde~dndp~rF~~ 84 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRR----A--NDYRLILISAPAGFGKTTLLAQWREL-AADGAAVAWLS-LDESDNDPARFLS 84 (894)
T ss_pred CCCCCcccccccHHHHHHHhc----C--CCceEEEEeCCCCCcHHHHHHHHHHh-cCcccceeEee-cCCccCCHHHHHH
Confidence 456667778888865554443 1 47899999999999999999999984 34457889998 4443 333332 2
Q ss_pred HhHHHhhhcCCCC-------------------chhHHHHhc--CcceEEEEeCCCCchh--hhhhhcc-cCCCCCCCEEE
Q 047214 100 ILSEKLEVAGANI-------------------PHFTKERVR--RMKVLIVLDDVNEVGQ--LEGLIGE-LDQFGPGSRIV 155 (658)
Q Consensus 100 ~l~~~l~~~~~~~-------------------~~~l~~~l~--~~~~LlvlDdv~~~~~--~~~l~~~-l~~~~~~~~il 155 (658)
.+.+.++....+. .+.+..-+. .++..+||||.+-..+ ...-+.. +....++..++
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 2223232111111 111222222 3478999999876553 3322233 23344688999
Q ss_pred EEecchHHHHhh--cCCCceEEc----CCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhccccc
Q 047214 156 VTTRDKRVLEKF--RGEKKIYRV----NGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCL 229 (658)
Q Consensus 156 vttR~~~~~~~~--~~~~~~~~l----~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~ 229 (658)
+|||+.+...-. .-....+++ -.|+.+|+.+||...... +-.+..++.+.+.+.|.+-|+.+++-+.++
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-----~Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-----PLDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-----CCChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 999988532221 011112222 378999999999887522 222335789999999999999999988884
Q ss_pred c-cHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeeecCCCCCHHHHHHHhcc-ccccchHHhhhccC
Q 047214 230 K-RKSHWENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIACFFEGEDKDFVARILDD-SESDGLDVLIDKSL 307 (658)
Q Consensus 230 ~-~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp~~~~~~~l~~~~~~-~~~~~l~~L~~~~l 307 (658)
+ +...-...+..... .+ -.....--++.||++.|..+..+|+++. |..+....+... ++...+++|.+++|
T Consensus 240 ~~~~~q~~~~LsG~~~----~l--~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~ng~amLe~L~~~gL 312 (894)
T COG2909 240 NTSAEQSLRGLSGAAS----HL--SDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEENGQAMLEELERRGL 312 (894)
T ss_pred CCcHHHHhhhccchHH----HH--HHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCCcHHHHHHHHHhCCC
Confidence 4 33222221111100 01 1223344468999999999999999865 233334444444 67777999999999
Q ss_pred ceee----CCeEEeehHHHHHHHHHhhhcc
Q 047214 308 ISIS----GNCLQMHDLLQEMGQQIVRQES 333 (658)
Q Consensus 308 l~~~----~~~~~~H~~v~~~~~~~~~~~~ 333 (658)
+-.. ..+|++|.++.||.+.....+.
T Consensus 313 Fl~~Ldd~~~WfryH~LFaeFL~~r~~~~~ 342 (894)
T COG2909 313 FLQRLDDEGQWFRYHHLFAEFLRQRLQREL 342 (894)
T ss_pred ceeeecCCCceeehhHHHHHHHHhhhcccc
Confidence 9765 6789999999999998888754
No 24
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.36 E-value=6.5e-12 Score=141.70 Aligned_cols=297 Identities=14% Similarity=0.144 Sum_probs=184.2
Q ss_pred CcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh----hHhHHH
Q 047214 29 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG----KILSEK 104 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~----~~l~~~ 104 (658)
.++||+.+++.|...+.....+...++.+.|.+|+|||++++++.+.+.+.+...+-.. ..+......+ +.+.++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~-f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGK-FDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhh-cccccCCCchHHHHHHHHHH
Confidence 37999999999999998655467789999999999999999999999665422221111 1111111111 111111
Q ss_pred hhh-------------------------------------cCCCC------------------chhHHHHh-cCcceEEE
Q 047214 105 LEV-------------------------------------AGANI------------------PHFTKERV-RRMKVLIV 128 (658)
Q Consensus 105 l~~-------------------------------------~~~~~------------------~~~l~~~l-~~~~~Llv 128 (658)
.+. .+... ...+.... +.++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 110 01000 11111122 34599999
Q ss_pred EeCC-CCchhhhhhhcccCCCCC-----CCEEEE--Eecch--HHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCC
Q 047214 129 LDDV-NEVGQLEGLIGELDQFGP-----GSRIVV--TTRDK--RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHC 198 (658)
Q Consensus 129 lDdv-~~~~~~~~l~~~l~~~~~-----~~~ilv--ttR~~--~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 198 (658)
+||+ |-+...-.++..+..... ...+.. +.+.. .+... ......|.|.||+..+...+..........
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~-~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~- 237 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKS-ATNITTITLAPLSRADTNQLVAATLGCTKL- 237 (849)
T ss_pred EecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhc-CCceeEEecCcCchhhHHHHHHHHhCCccc-
Confidence 9999 555443333333222121 112322 22322 12222 255679999999999999999888754322
Q ss_pred CchhHHHHHHHHHHcCCCcchhHHhhcccccc-------cHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhch
Q 047214 199 PEDLNWHSQRVVEYADGNPLVPKVLGSSLCLK-------RKSHWENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSI 271 (658)
Q Consensus 199 ~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~-------~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~ 271 (658)
...+..+.|.+++.|+|+++..+-+++..+ +...|+.-...+.. .+..+++...+....+.||...|++
T Consensus 238 --~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~--~~~~~~vv~~l~~rl~kL~~~t~~V 313 (849)
T COG3899 238 --LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI--LATTDAVVEFLAARLQKLPGTTREV 313 (849)
T ss_pred --ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC--chhhHHHHHHHHHHHhcCCHHHHHH
Confidence 223357999999999999999999888653 34456555433332 2223344567888899999999999
Q ss_pred hceeeecCCCCCHHHHHHHhcc----ccccchHHhhhccCceee--------CC---eEEeehHHHHHHHHHhhhc
Q 047214 272 FLDIACFFEGEDKDFVARILDD----SESDGLDVLIDKSLISIS--------GN---CLQMHDLLQEMGQQIVRQE 332 (658)
Q Consensus 272 l~~~a~fp~~~~~~~l~~~~~~----~~~~~l~~L~~~~ll~~~--------~~---~~~~H~~v~~~~~~~~~~~ 332 (658)
+...|++.+.|+.+.+..+.++ .+...++.|....++..+ .. +-..|+.||+.+-...-+.
T Consensus 314 l~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 314 LKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh
Confidence 9999999999999998888875 444555555555544321 11 1147888887776544433
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=1.7e-13 Score=140.31 Aligned_cols=101 Identities=26% Similarity=0.261 Sum_probs=66.4
Q ss_pred CCccEEEcccccccc-----ccccccCCCCCCEEecCCCccchhhhhhhc-----CCCCCcEEeccCCcCC--------c
Q 047214 557 GKITRLYLGQSAIEE-----VPSSIECLTDLEVLDLRDCKRLKRISTRFC-----KLRSLVDLFLHGCLNL--------Q 618 (658)
Q Consensus 557 ~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~l--------~ 618 (658)
++|+.|++++|.+.. ++..+..+++|++|++++|+........+. ..+.|++|++++|..- .
T Consensus 193 ~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~ 272 (319)
T cd00116 193 CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAE 272 (319)
T ss_pred CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHH
Confidence 367777777766652 333466788999999999874432222121 2478999999988621 2
Q ss_pred cCCCCCCcccEEeccCCccccc----cCC---CC-CCccEEeccCCCC
Q 047214 619 SLPALPLCLKSLDLRDCKMLQS----LPE---LP-SCLEALDLTSCNM 658 (658)
Q Consensus 619 ~l~~l~~~L~~L~l~~~~~l~~----i~~---~~-~~L~~L~l~~~~~ 658 (658)
.++.++. |+++++++|..-.. +.. .+ +.|+++++.+|++
T Consensus 273 ~~~~~~~-L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 273 VLAEKES-LLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhcCCC-ccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 3446777 99999999874322 221 23 6799999998875
No 26
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.31 E-value=6e-12 Score=122.58 Aligned_cols=188 Identities=22% Similarity=0.262 Sum_probs=102.1
Q ss_pred cccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh-hH--------
Q 047214 30 LVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG-KI-------- 100 (658)
Q Consensus 30 ~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~~-------- 100 (658)
|+||++|+++|.+++.. +..+.+.|+|+.|+|||+|++++.+..++.-..++|+........ ... ..
T Consensus 1 F~gR~~el~~l~~~l~~---~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLES---GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH-----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHh---hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHH
Confidence 79999999999999976 346789999999999999999999987543334444432222111 111 11
Q ss_pred -hHHHhhhcC-------------CCC---chhHHHHhcC--cceEEEEeCCCCch-h-------hhhhhcccCC--CCCC
Q 047214 101 -LSEKLEVAG-------------ANI---PHFTKERVRR--MKVLIVLDDVNEVG-Q-------LEGLIGELDQ--FGPG 151 (658)
Q Consensus 101 -l~~~l~~~~-------------~~~---~~~l~~~l~~--~~~LlvlDdv~~~~-~-------~~~l~~~l~~--~~~~ 151 (658)
+...+...- ... ...+.+.+.. ++.+||+||+.... . ...+...+.. ....
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 156 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN 156 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC
Confidence 111111110 011 3333344433 35999999996655 1 1122222211 1334
Q ss_pred CEEEEEecchHHHHh-------hcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHH
Q 047214 152 SRIVVTTRDKRVLEK-------FRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKV 222 (658)
Q Consensus 152 ~~ilvttR~~~~~~~-------~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 222 (658)
..+++++........ ..+....+.+++|+.+++.+++....... ..-+..++..++|++.++|+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 455555554444433 12445569999999999999998865333 11122345679999999999988764
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.25 E-value=3.6e-10 Score=119.13 Aligned_cols=277 Identities=13% Similarity=0.042 Sum_probs=152.9
Q ss_pred CCCCCCcccccchHhhHHHHhccc-CCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc--CceEEEeccccccccchh-h
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF--EGRCFLSDIRKNSETGGG-K 99 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~-~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~-~ 99 (658)
-..++.++||++++++|...+... .+...+.+.|+|++|+|||++++++++...+.. -..+++.+.........+ +
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 345678999999999999998643 124456688999999999999999999876543 223444422221111111 2
Q ss_pred HhHHHhhhcCC----CC---chhHHHHhc--CcceEEEEeCCCCch------hhhhhhcccCCCCCC--CEEEEEecchH
Q 047214 100 ILSEKLEVAGA----NI---PHFTKERVR--RMKVLIVLDDVNEVG------QLEGLIGELDQFGPG--SRIVVTTRDKR 162 (658)
Q Consensus 100 ~l~~~l~~~~~----~~---~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~l~~~l~~~~~~--~~ilvttR~~~ 162 (658)
+..++.+.... .. .+.+.+.++ ++..+||||+++... .+..+...... ..+ ..+|.+++...
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 22222111110 11 234444554 346899999998753 23444333222 223 33566666553
Q ss_pred HHHhh------cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc----CCCcchhHHhhcccc----
Q 047214 163 VLEKF------RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYA----DGNPLVPKVLGSSLC---- 228 (658)
Q Consensus 163 ~~~~~------~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~----~g~Plai~~~a~~l~---- 228 (658)
..... .-....+.+.+++.++..+.+..++........-.++.++.+++.+ +..+.|+.++-.+..
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 32221 0123578999999999999998876322111111223344555544 445556655433221
Q ss_pred -cc---cHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeeecC----CCCCHHHHHHH-------hcc
Q 047214 229 -LK---RKSHWENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIACFF----EGEDKDFVARI-------LDD 293 (658)
Q Consensus 229 -~~---~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp----~~~~~~~l~~~-------~~~ 293 (658)
+. +......+.+... .....-.+..||.+.|..+..++... .......+..- +..
T Consensus 265 ~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 3444544444431 22234457889999888887766443 22333333321 111
Q ss_pred ------ccccchHHhhhccCceee
Q 047214 294 ------SESDGLDVLIDKSLISIS 311 (658)
Q Consensus 294 ------~~~~~l~~L~~~~ll~~~ 311 (658)
....+++.|...|+|...
T Consensus 335 ~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 234568889999998754
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.25 E-value=7e-11 Score=119.76 Aligned_cols=255 Identities=18% Similarity=0.151 Sum_probs=146.0
Q ss_pred CCcccccchHhhHHHHhcccC--CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHh
Q 047214 28 NGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKL 105 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~--~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 105 (658)
.+|+|+++.++++..++.... ....+.+.++|++|+|||+||+.+++.....+. ... ...... ...+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~-~~~~~~---~~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS-GPALEK---PGDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec-cchhcC---chhHHHHH
Confidence 469999999999999887321 134567889999999999999999998654321 111 110000 01111111
Q ss_pred hhcCCCCchhHHHHhcCcceEEEEeCCCCchh--hhhhhcccC-------------------CCCCCCEEEEEecchHHH
Q 047214 106 EVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ--LEGLIGELD-------------------QFGPGSRIVVTTRDKRVL 164 (658)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~l~~~l~-------------------~~~~~~~ilvttR~~~~~ 164 (658)
. .+ +...++++|+++.... .+.+...+. ...+.+-|..|++...+.
T Consensus 77 ~------------~~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~ 143 (305)
T TIGR00635 77 T------------NL-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLT 143 (305)
T ss_pred H------------hc-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccC
Confidence 1 01 1234666666654321 111111100 011234445566665443
Q ss_pred HhhcCC-CceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhcccccccHHHHHHHHHH-H
Q 047214 165 EKFRGE-KKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCLKRKSHWENLLHD-L 242 (658)
Q Consensus 165 ~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~~~~-l 242 (658)
...... ...+.+++++.++..+++.+.+..... .-.++.++.|++.|+|.|-.+..++..+ |..+... -
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~ 214 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQ 214 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCC
Confidence 332122 357899999999999999987754322 2334567899999999997655444322 1111000 0
Q ss_pred hhcCCcchhhHHhhhhhhccCCChhhhchhcee-eecCC-CCCHHHHHHHhcc---ccccchH-HhhhccCceee
Q 047214 243 NRICESDIHDIYKKLKITFDELTPRVQSIFLDI-ACFFE-GEDKDFVARILDD---SESDGLD-VLIDKSLISIS 311 (658)
Q Consensus 243 ~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~-a~fp~-~~~~~~l~~~~~~---~~~~~l~-~L~~~~ll~~~ 311 (658)
.......+......+...|..++...+..+..+ +.+.. ++..+.++..+.. .++..++ .|++.+|++..
T Consensus 215 ~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 215 KIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred CCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 001111112222225667888888888777633 55544 3677778877766 5566677 69999999755
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.20 E-value=2.2e-10 Score=116.91 Aligned_cols=261 Identities=19% Similarity=0.164 Sum_probs=153.9
Q ss_pred CCCCCCCcccccchHhhHHHHhccc--CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~--~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
.|..-.+|+||++.++.+..++... .+...+.+.|+|++|+|||++|+.+++.....+. +.. ....... ..
T Consensus 20 rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~~---~~ 92 (328)
T PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEKP---GD 92 (328)
T ss_pred CcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccCh---HH
Confidence 4456688999999999998888642 1144567889999999999999999998654321 111 1100000 11
Q ss_pred hHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccC-------------------CCCCCCEEEEEec
Q 047214 101 LSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELD-------------------QFGPGSRIVVTTR 159 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~-------------------~~~~~~~ilvttR 159 (658)
+...+ ..+ ...-+|++|+++... ..+.+...+. ...+.+-|..|++
T Consensus 93 l~~~l------------~~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~ 159 (328)
T PRK00080 93 LAAIL------------TNL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTR 159 (328)
T ss_pred HHHHH------------Hhc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCC
Confidence 11111 111 234577788876543 1111111100 0012233455666
Q ss_pred chHHHHhhcC-CCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhcccccccHHHHHHH
Q 047214 160 DKRVLEKFRG-EKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCLKRKSHWENL 238 (658)
Q Consensus 160 ~~~~~~~~~~-~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~ 238 (658)
...+...... ....+.+++++.++..+++.+.+..... .-.++.+..|++.|+|.|-.+..+...+ ..|...
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~ 232 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV--EIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQV 232 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHH
Confidence 4433333212 2357899999999999999987654332 2334568999999999996544443322 111111
Q ss_pred HHHHhhcCCcchhhHHhhhhhhccCCChhhhchhc-eeeecCCC-CCHHHHHHHhcc---ccccchH-HhhhccCceee
Q 047214 239 LHDLNRICESDIHDIYKKLKITFDELTPRVQSIFL-DIACFFEG-EDKDFVARILDD---SESDGLD-VLIDKSLISIS 311 (658)
Q Consensus 239 ~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~-~~a~fp~~-~~~~~l~~~~~~---~~~~~l~-~L~~~~ll~~~ 311 (658)
. .-.......+......+...+..|++..+..+. ....|+.+ +..+.++..+.. ..+..++ .|++.+|++..
T Consensus 233 ~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 233 K-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred c-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 0 000111122233344566778888888888886 55556554 778888888877 4556677 89999999754
No 30
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=7.6e-12 Score=128.14 Aligned_cols=245 Identities=16% Similarity=0.125 Sum_probs=136.0
Q ss_pred hhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-------C-CCCCccEEE
Q 047214 380 GAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-------F-KPENLVELN 451 (658)
Q Consensus 380 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-------~-~l~~L~~L~ 451 (658)
..+..+.+|+.|+++++.+..... ..++..+...+ .++.|+++++.+...+.. + .+.+|+.|+
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~--------~~i~~~l~~~~-~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 87 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAA--------KALASALRPQP-SLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELD 87 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHH--------HHHHHHHhhCC-CceEEeccccccCCcchHHHHHHHHHHhcCceeEEE
Confidence 344455567777777776532211 12344444444 567777766655432221 1 456777777
Q ss_pred ecCCCccc-ccccccCC---CCccEEeccCCCccc----ccC--CCcC-CCccEEEeecCCcc-----cccccccCCCCC
Q 047214 452 LHFSKVEQ-LWEGKKEA---FKLKSINLSHCRHFI----DMS--YPSA-PNLETYLLDYTNFA-----CVPSSIQNFKYL 515 (658)
Q Consensus 452 L~~~~i~~-l~~~~~~l---~~L~~L~l~~~~~~~----~~~--l~~l-~~L~~L~l~~~~~~-----~~~~~~~~l~~L 515 (658)
+++|.+.. .+..+..+ ++|++|++++|.... .+. +..+ ++|+.|++.+|.+. .++..+..+++|
T Consensus 88 l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L 167 (319)
T cd00116 88 LSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL 167 (319)
T ss_pred ccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc
Confidence 77776652 22223333 337777777774221 111 3444 67777777776664 233345566677
Q ss_pred CEEeccCCCCCCc-----CCC-CCCCCCCcEEeccCCCCc-------cccCcccCCccEEEccccccccccc-cc-----
Q 047214 516 SALSFEGCKSLRS-----FPS-NFRFVCPVTINFSSCVNL-------IEFPQISGKITRLYLGQSAIEEVPS-SI----- 576 (658)
Q Consensus 516 ~~L~l~~~~~l~~-----~~~-~~~~~~L~~L~l~~~~~l-------~~~~~~~~~L~~L~l~~~~i~~~~~-~~----- 576 (658)
++|++++|. +.. ++. ...+++|+.|++++|..- .......++|+.|++++|.+.+... .+
T Consensus 168 ~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~ 246 (319)
T cd00116 168 KELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246 (319)
T ss_pred CEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh
Confidence 777777763 321 111 113457777777776421 1112234577788888777763211 11
Q ss_pred cCCCCCCEEecCCCccc----hhhhhhhcCCCCCcEEeccCCcCCccCC---------CC-CCcccEEeccCCc
Q 047214 577 ECLTDLEVLDLRDCKRL----KRISTRFCKLRSLVDLFLHGCLNLQSLP---------AL-PLCLKSLDLRDCK 636 (658)
Q Consensus 577 ~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l~~l~---------~l-~~~L~~L~l~~~~ 636 (658)
...+.|++|++++|... ..+...+..+++|+.+++++|. +..-+ .. +. |++|++.+++
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 318 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK-FGEEGAQLLAESLLEPGNE-LESLWVKDDS 318 (319)
T ss_pred ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC-CcHHHHHHHHHHHhhcCCc-hhhcccCCCC
Confidence 12478888888888643 2344455667888888888865 33221 33 45 7888877765
No 31
>PF05729 NACHT: NACHT domain
Probab=99.13 E-value=5.5e-10 Score=102.31 Aligned_cols=139 Identities=24% Similarity=0.382 Sum_probs=86.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhcccc------CceEEEeccccccccch---h-hHhHHHhhhcCCCCchhHHHHh-c
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEF------EGRCFLSDIRKNSETGG---G-KILSEKLEVAGANIPHFTKERV-R 121 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~---~-~~l~~~l~~~~~~~~~~l~~~l-~ 121 (658)
|++.|+|.+|+||||++++++..+.... ...+|+. .+....... + +.+..............+...+ +
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEK 79 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHc
Confidence 5799999999999999999999855432 3444444 443333221 1 2222222211111122222222 4
Q ss_pred CcceEEEEeCCCCchh---------hhhhhcccCC--CCCCCEEEEEecchHH--HHhhcCCCceEEcCCCChHHHHHHH
Q 047214 122 RMKVLIVLDDVNEVGQ---------LEGLIGELDQ--FGPGSRIVVTTRDKRV--LEKFRGEKKIYRVNGLEFEEAFEHF 188 (658)
Q Consensus 122 ~~~~LlvlDdv~~~~~---------~~~l~~~l~~--~~~~~~ilvttR~~~~--~~~~~~~~~~~~l~~L~~~~~~~l~ 188 (658)
.++++||+|+++.... +..++..+.. ..++.++++|+|.... ..........+.+.+|+.++..+++
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYL 159 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHH
Confidence 6799999999976553 2223333222 2578999999998865 2222244468999999999999999
Q ss_pred HHHh
Q 047214 189 CNFA 192 (658)
Q Consensus 189 ~~~~ 192 (658)
++..
T Consensus 160 ~~~f 163 (166)
T PF05729_consen 160 RKYF 163 (166)
T ss_pred HHHh
Confidence 8764
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=2.7e-12 Score=130.03 Aligned_cols=199 Identities=21% Similarity=0.270 Sum_probs=104.6
Q ss_pred EecccCCCCCCCCC---CCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcc
Q 047214 429 HWDKYPLRTLPSNF---KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFA 503 (658)
Q Consensus 429 ~l~~~~l~~lp~~~---~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~ 503 (658)
.|.+-+++.+|... .+..-...||+.|.+.++|..+..+..|..+.++.| .+..+| ++++..|..|+++.|++.
T Consensus 56 ~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS 134 (722)
T KOG0532|consen 56 LLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLS 134 (722)
T ss_pred ccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhh
Confidence 34444444444432 344445555555666555555555555555555544 333444 555555666666666665
Q ss_pred cccccccCCCCCCEEeccCCCCCCcCCCCC-CCCCCcEEeccCCCCccccCccc---CCccEEEccccccccccccccCC
Q 047214 504 CVPSSIQNFKYLSALSFEGCKSLRSFPSNF-RFVCPVTINFSSCVNLIEFPQIS---GKITRLYLGQSAIEEVPSSIECL 579 (658)
Q Consensus 504 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~---~~L~~L~l~~~~i~~~~~~~~~l 579 (658)
.+|..+|.|+ |+.|.+++| +++.+|... ....|..|+.+.|. +..+|.-. .+|+.|.+..|.+..+|..+..+
T Consensus 135 ~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~L 211 (722)
T KOG0532|consen 135 HLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL 211 (722)
T ss_pred cCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC
Confidence 5655555555 555555544 455555543 34455555555542 33333322 23335555556666666555544
Q ss_pred CCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC-------CCCCcccEEeccCC
Q 047214 580 TDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP-------ALPLCLKSLDLRDC 635 (658)
Q Consensus 580 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-------~l~~~L~~L~l~~~ 635 (658)
| |.+|++++|+ +..+|-.|.+|..|++|.|.+|+ +++-| .+.- .++|++.-|
T Consensus 212 p-Li~lDfScNk-is~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHI-FKyL~~qA~ 270 (722)
T KOG0532|consen 212 P-LIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHI-FKYLSTQAC 270 (722)
T ss_pred c-eeeeecccCc-eeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceee-eeeecchhc
Confidence 3 5566666554 45555556666666666666655 44444 2334 555555555
No 33
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.13 E-value=3.5e-09 Score=110.45 Aligned_cols=276 Identities=15% Similarity=0.100 Sum_probs=148.4
Q ss_pred CCCCcccccchHhhHHHHhccc-CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccC------ceEEEeccccccccchh
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE------GRCFLSDIRKNSETGGG 98 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~-~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~ 98 (658)
.++.++||++++++|..++... .+...+.+.|+|++|+|||++++++++.+.+... ..+|+.+.........+
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 3457999999999999998742 1144567899999999999999999987543221 23444422221212222
Q ss_pred hHhHHHh---hhcCC----CC---chhHHHHhc--CcceEEEEeCCCCch-h----hhhhhccc-CCCC--CCCEEEEEe
Q 047214 99 KILSEKL---EVAGA----NI---PHFTKERVR--RMKVLIVLDDVNEVG-Q----LEGLIGEL-DQFG--PGSRIVVTT 158 (658)
Q Consensus 99 ~~l~~~l---~~~~~----~~---~~~l~~~l~--~~~~LlvlDdv~~~~-~----~~~l~~~l-~~~~--~~~~ilvtt 158 (658)
..+.+.+ +.... .. .+.+.+.+. +++++||||+++... . +..+.... .... ....+|+++
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 2222222 11110 00 233344443 457899999998772 1 22332221 1111 234556666
Q ss_pred cchHHHHhh----cCC--CceEEcCCCChHHHHHHHHHHhcC---CCCCCchhHHHHHHHHHHcCCCcchh-HHhhccc-
Q 047214 159 RDKRVLEKF----RGE--KKIYRVNGLEFEEAFEHFCNFAFE---ENHCPEDLNWHSQRVVEYADGNPLVP-KVLGSSL- 227 (658)
Q Consensus 159 R~~~~~~~~----~~~--~~~~~l~~L~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~i~~~~~g~Plai-~~~a~~l- 227 (658)
+.......+ ... ...+.+.+++.++..+++..++.. ...-.++.-+.+..+++.+.|.|-.+ ..+-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 554322221 111 257899999999999999887631 11122222234555677777887433 3222211
Q ss_pred ---c-c--c-cHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeeecCC----CCCHHHHHH----Hhc
Q 047214 228 ---C-L--K-RKSHWENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIACFFE----GEDKDFVAR----ILD 292 (658)
Q Consensus 228 ---~-~--~-~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp~----~~~~~~l~~----~~~ 292 (658)
. + . +......+.+... .....-.+..||.+.+.++..++..-. .+....+.. +.+
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 0 1 1 3333444433321 122334556788887777666553211 122322111 112
Q ss_pred c---------ccccchHHhhhccCceee
Q 047214 293 D---------SESDGLDVLIDKSLISIS 311 (658)
Q Consensus 293 ~---------~~~~~l~~L~~~~ll~~~ 311 (658)
. ....++..|...|+|+..
T Consensus 323 ~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 323 DIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred hcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 1 455678889999999865
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.09 E-value=6.7e-12 Score=121.79 Aligned_cols=80 Identities=23% Similarity=0.191 Sum_probs=47.2
Q ss_pred ccCCccEEEccccccccccc-cccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC-----CCCCccc
Q 047214 555 ISGKITRLYLGQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP-----ALPLCLK 628 (658)
Q Consensus 555 ~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-----~l~~~L~ 628 (658)
.+++|++|+|++|.|+.+.. +|.+...++.|.+..|+.-..-...|.++..|+.|++++|+ ++.+. .+.+ |.
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~-l~ 349 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFS-LS 349 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe-eEEEecccccccce-ee
Confidence 34566677777777776644 36677777777777766322223345667777777777754 33322 3444 66
Q ss_pred EEeccCCc
Q 047214 629 SLDLRDCK 636 (658)
Q Consensus 629 ~L~l~~~~ 636 (658)
+|.+-.||
T Consensus 350 ~l~l~~Np 357 (498)
T KOG4237|consen 350 TLNLLSNP 357 (498)
T ss_pred eeehccCc
Confidence 66665554
No 35
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.09 E-value=3.5e-09 Score=105.36 Aligned_cols=189 Identities=16% Similarity=0.127 Sum_probs=106.7
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCC----
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANI---- 112 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---- 112 (658)
.+++.+.+...-..+.+.++|+|++|+||||+++.++......--..+|+. .........+..+...++......
T Consensus 28 ~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~~~~~~ 106 (269)
T TIGR03015 28 HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-NTRVDAEDLLRMVAADFGLETEGRDKAA 106 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-CCCCCHHHHHHHHHHHcCCCCCCCCHHH
Confidence 344555444211134568999999999999999999988653211122222 111111111233333333322111
Q ss_pred -chhHHHH-----hcCcceEEEEeCCCCch--hhhhhhcccC---CCCCCCEEEEEecchHHHHhh---------cCCCc
Q 047214 113 -PHFTKER-----VRRMKVLIVLDDVNEVG--QLEGLIGELD---QFGPGSRIVVTTRDKRVLEKF---------RGEKK 172 (658)
Q Consensus 113 -~~~l~~~-----l~~~~~LlvlDdv~~~~--~~~~l~~~l~---~~~~~~~ilvttR~~~~~~~~---------~~~~~ 172 (658)
...+.+. ..+++.++|+||++... .++.+..... .......|++|.... ....+ .....
T Consensus 107 ~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~ 185 (269)
T TIGR03015 107 LLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIA 185 (269)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheee
Confidence 1222222 25678999999998865 3444332211 112233445555432 21111 01245
Q ss_pred eEEcCCCChHHHHHHHHHHhcCCCC--CCchhHHHHHHHHHHcCCCcchhHHhhccc
Q 047214 173 IYRVNGLEFEEAFEHFCNFAFEENH--CPEDLNWHSQRVVEYADGNPLVPKVLGSSL 227 (658)
Q Consensus 173 ~~~l~~L~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plai~~~a~~l 227 (658)
.+.+.+++.++..+++...+..... ...-.++..+.|++.++|+|..|..++..+
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 7889999999999999877643221 122345678999999999999998888765
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1.2e-11 Score=125.45 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=52.8
Q ss_pred eecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC--CCcC
Q 047214 412 VLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSA 489 (658)
Q Consensus 412 ~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l 489 (658)
..+|..+.++. .|.+|+|+.|.+..+|..++.--|+.|-+++|+++.+|..++.+.+|..|+.++| .+..+| ++++
T Consensus 111 r~ip~~i~~L~-~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l 188 (722)
T KOG0532|consen 111 RTIPEAICNLE-ALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYL 188 (722)
T ss_pred eecchhhhhhh-HHHHhhhccchhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhH
Confidence 34455555554 5555555555555555555444455555555555555555554455555555554 233333 4455
Q ss_pred CCccEEEeecCCcccccccccCCCCCCEEecc
Q 047214 490 PNLETYLLDYTNFACVPSSIQNFKYLSALSFE 521 (658)
Q Consensus 490 ~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 521 (658)
..|+.|++..|++..+|..++.+ .|.+|+++
T Consensus 189 ~slr~l~vrRn~l~~lp~El~~L-pLi~lDfS 219 (722)
T KOG0532|consen 189 TSLRDLNVRRNHLEDLPEELCSL-PLIRLDFS 219 (722)
T ss_pred HHHHHHHHhhhhhhhCCHHHhCC-ceeeeecc
Confidence 55555555555555554444433 24444444
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.01 E-value=2.7e-09 Score=104.97 Aligned_cols=174 Identities=21% Similarity=0.312 Sum_probs=112.5
Q ss_pred CCCCCCcccccchH---hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 24 TDSSNGLVGLNSRI---EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 24 ~~~~~~~vGR~~~~---~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
|.+-+++||.+.-+ +-|.+++.. ++.....+||++|+||||||+.++......|... + .....++.
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~---~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~---s-----Av~~gvkd 88 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA---GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEAL---S-----AVTSGVKD 88 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc---CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEe---c-----cccccHHH
Confidence 44567788877665 456666665 6688899999999999999999999877665432 1 11122233
Q ss_pred hHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEE--EecchH--HHHhhcCCCceE
Q 047214 101 LSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVV--TTRDKR--VLEKFRGEKKIY 174 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilv--ttR~~~--~~~~~~~~~~~~ 174 (658)
+.+++. +.-.....+++.+|++|+|+.-. +-+.+++.+ ..|.-|+| ||-|+. +.....+...++
T Consensus 89 lr~i~e-------~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf 158 (436)
T COG2256 89 LREIIE-------EARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVF 158 (436)
T ss_pred HHHHHH-------HHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhhee
Confidence 333332 11123334789999999997654 455555442 33444443 666662 444445778999
Q ss_pred EcCCCChHHHHHHHHHHhcCCCC-----CCchhHHHHHHHHHHcCCCcc
Q 047214 175 RVNGLEFEEAFEHFCNFAFEENH-----CPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 175 ~l~~L~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~i~~~~~g~Pl 218 (658)
.+++|+.++-.+++.+.+..... ...-.++..+.+++.++|..-
T Consensus 159 ~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 159 ELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred eeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 99999999999999885422211 111234467888999998764
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.97 E-value=4.4e-10 Score=118.59 Aligned_cols=180 Identities=22% Similarity=0.218 Sum_probs=143.3
Q ss_pred CCCCCCcccccceEEecccCCCCCCCCCCCC--CccEEEecCCCcccccccccCCCCccEEeccCCCcccccC--CCcCC
Q 047214 415 PDGLDYLPKNLRYLHWDKYPLRTLPSNFKPE--NLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAP 490 (658)
Q Consensus 415 p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~--~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~ 490 (658)
+..+..+. .+..|.+.++.+..+|+...+. +|+.|++++|.+..+|..+..+++|+.|++++| .+.++| .+.++
T Consensus 109 ~~~~~~~~-~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~ 186 (394)
T COG4886 109 ISELLELT-NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLS 186 (394)
T ss_pred chhhhccc-ceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhh
Confidence 33444444 7999999999999999988443 899999999999999888999999999999999 677788 44999
Q ss_pred CccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCcc--ccCcccCCccEEEccccc
Q 047214 491 NLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLI--EFPQISGKITRLYLGQSA 568 (658)
Q Consensus 491 ~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~L~~L~l~~~~ 568 (658)
+|+.|++++|.+..+|.....+..|+.|.+++|..+.......++..+..+.+.++.... .....+.+++.|++++|.
T Consensus 187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred hhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc
Confidence 999999999999999987667777999999988555555555577778777766653222 233345668899999999
Q ss_pred cccccccccCCCCCCEEecCCCccchhhh
Q 047214 569 IEEVPSSIECLTDLEVLDLRDCKRLKRIS 597 (658)
Q Consensus 569 i~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 597 (658)
++.++. ++.+.+|+.|+++++......+
T Consensus 267 i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 267 ISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccccc-ccccCccCEEeccCccccccch
Confidence 998887 8899999999999987544433
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=9.5e-11 Score=115.52 Aligned_cols=206 Identities=15% Similarity=0.103 Sum_probs=138.3
Q ss_pred HHhhccCCcceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEec
Q 047214 352 VLKHNKGTDAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWD 431 (658)
Q Consensus 352 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~ 431 (658)
....+...++++.++++....+..... +....++++|.|++++|-+... ..+-.-...+| +|+.|+|+
T Consensus 113 i~akQsn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw----------~~v~~i~eqLp-~Le~LNls 180 (505)
T KOG3207|consen 113 IAAKQSNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNW----------FPVLKIAEQLP-SLENLNLS 180 (505)
T ss_pred HHHHhhhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhH----------HHHHHHHHhcc-cchhcccc
Confidence 344445566777788776666444333 5667889999999999876432 12333445677 99999999
Q ss_pred ccCCCCCCCCC---CCCCccEEEecCCCcc--cccccccCCCCccEEeccCCCccccc--CCCcCCCccEEEeecCCccc
Q 047214 432 KYPLRTLPSNF---KPENLVELNLHFSKVE--QLWEGKKEAFKLKSINLSHCRHFIDM--SYPSAPNLETYLLDYTNFAC 504 (658)
Q Consensus 432 ~~~l~~lp~~~---~l~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~ 504 (658)
.|++...-++. .+.+|+.|.|++|.++ ++-.....+++|+.|++.+|..+.-. +...++.|++|+|++|++.+
T Consensus 181 ~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 181 SNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred cccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence 99887555443 7889999999999887 23233556789999999988532222 26677889999999988877
Q ss_pred cc--ccccCCCCCCEEeccCCCCCCcC--CCC------CCCCCCcEEeccCCCC--ccccC--cccCCccEEEccccccc
Q 047214 505 VP--SSIQNFKYLSALSFEGCKSLRSF--PSN------FRFVCPVTINFSSCVN--LIEFP--QISGKITRLYLGQSAIE 570 (658)
Q Consensus 505 ~~--~~~~~l~~L~~L~l~~~~~l~~~--~~~------~~~~~L~~L~l~~~~~--l~~~~--~~~~~L~~L~l~~~~i~ 570 (658)
++ ..+..++.|+.|+++.| .+.++ |+. -.+++|++|++..|+. ..++- ...++|..|.+.+|.++
T Consensus 261 ~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 261 FDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 76 45788889999988876 44443 222 2467777777777643 11221 13455666666666555
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.97 E-value=4.1e-10 Score=101.56 Aligned_cols=93 Identities=19% Similarity=0.303 Sum_probs=24.9
Q ss_pred cCCCCCCCCCCCCCccEEEecCCCccccccccc-CCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCcccccccc-
Q 047214 433 YPLRTLPSNFKPENLVELNLHFSKVEQLWEGKK-EAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVPSSI- 509 (658)
Q Consensus 433 ~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~-~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~- 509 (658)
+.|+..|...++.+++.|+|++|.|+.+. .++ .+.+|+.|++++| .+..++ +..+++|++|++++|.+.+++..+
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~ 84 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNRISSISEGLD 84 (175)
T ss_dssp ------------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHH
T ss_pred ccccccccccccccccccccccccccccc-chhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCCCCCCccccchH
Confidence 34555555556666777777777777663 344 4677777887777 566666 777888888888888888776544
Q ss_pred cCCCCCCEEeccCCCCCCc
Q 047214 510 QNFKYLSALSFEGCKSLRS 528 (658)
Q Consensus 510 ~~l~~L~~L~l~~~~~l~~ 528 (658)
..+++|+.|++++| .+.+
T Consensus 85 ~~lp~L~~L~L~~N-~I~~ 102 (175)
T PF14580_consen 85 KNLPNLQELYLSNN-KISD 102 (175)
T ss_dssp HH-TT--EEE-TTS----S
T ss_pred HhCCcCCEEECcCC-cCCC
Confidence 35788888888876 3443
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.94 E-value=4.2e-10 Score=126.79 Aligned_cols=218 Identities=18% Similarity=0.230 Sum_probs=108.4
Q ss_pred ccceEEecccC--CCCCCCCC--CCCCccEEEecCC-CcccccccccCCCCccEEeccCCCcccccC--CCcCCCccEEE
Q 047214 424 NLRYLHWDKYP--LRTLPSNF--KPENLVELNLHFS-KVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYL 496 (658)
Q Consensus 424 ~L~~L~l~~~~--l~~lp~~~--~l~~L~~L~L~~~-~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~ 496 (658)
.|+.|-+.+|. +..++..+ .++.|++|||++| .+.++|..+++|.+|++|+++++ .+..+| ++++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheec
Confidence 45555555554 44554432 5666666666644 34566666666666666666655 445555 66666666666
Q ss_pred eecCCc-ccccccccCCCCCCEEeccCCCCCC---cCCCCCCCCCCcEEeccCCCC--cccc---CcccCCccEEEcccc
Q 047214 497 LDYTNF-ACVPSSIQNFKYLSALSFEGCKSLR---SFPSNFRFVCPVTINFSSCVN--LIEF---PQISGKITRLYLGQS 567 (658)
Q Consensus 497 l~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~---~~~~~~~~~~L~~L~l~~~~~--l~~~---~~~~~~L~~L~l~~~ 567 (658)
+..+.- ..+|.....|.+|++|.+..-.... .+.....+.+|+.+.+..+.. +..+ +........+.+.++
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~ 704 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC 704 (889)
T ss_pred cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc
Confidence 655332 2233333446666666554321000 011112344444444433221 0000 000111112333333
Q ss_pred ccccccccccCCCCCCEEecCCCccchhhhhh-----hc-CCCCCcEEeccCCcCCccCC--CCCCcccEEeccCCcccc
Q 047214 568 AIEEVPSSIECLTDLEVLDLRDCKRLKRISTR-----FC-KLRSLVDLFLHGCLNLQSLP--ALPLCLKSLDLRDCKMLQ 639 (658)
Q Consensus 568 ~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~-~l~~L~~L~l~~~~~l~~l~--~l~~~L~~L~l~~~~~l~ 639 (658)
.....+..+..+++|+.|.+.+|......... .. .++++..+.+.+|.....+. .++.+|+.|.+.+|..+.
T Consensus 705 ~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e 784 (889)
T KOG4658|consen 705 SKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLE 784 (889)
T ss_pred ccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccc
Confidence 43444555677888888888887754322211 11 14456666666666555444 233338888888888776
Q ss_pred ccC
Q 047214 640 SLP 642 (658)
Q Consensus 640 ~i~ 642 (658)
.+.
T Consensus 785 ~~i 787 (889)
T KOG4658|consen 785 DII 787 (889)
T ss_pred cCC
Confidence 554
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=1.9e-10 Score=107.73 Aligned_cols=125 Identities=22% Similarity=0.224 Sum_probs=82.2
Q ss_pred CCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCC
Q 047214 445 ENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGC 523 (658)
Q Consensus 445 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 523 (658)
..|+.||||+|.|+.+-...+-+++++.|++++| .+..+. +..+++|+.||+++|.+..+..+--++-++++|.+++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 5677788888887777666777777888888877 444455 77777777888877777666555556667777777776
Q ss_pred CCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEcccccccccc--ccccCCCCCCEEecCCCcc
Q 047214 524 KSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVP--SSIECLTDLEVLDLRDCKR 592 (658)
Q Consensus 524 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~l~~L~~L~l~~~~~ 592 (658)
.+.++....++.+|.+|+++ +|.|..+. .+++++|.|+++.+.+|+.
T Consensus 363 -~iE~LSGL~KLYSLvnLDl~---------------------~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 363 -KIETLSGLRKLYSLVNLDLS---------------------SNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred -hHhhhhhhHhhhhheecccc---------------------ccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 44544443344444444444 44444332 2467788888888877763
No 43
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.92 E-value=9.2e-09 Score=108.19 Aligned_cols=179 Identities=20% Similarity=0.291 Sum_probs=111.8
Q ss_pred CCCCCCCcccccchHhh---HHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhh
Q 047214 23 ATDSSNGLVGLNSRIEQ---IKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGK 99 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~---l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 99 (658)
.|..-.++||++..+.. +.+++.. +....+.|+|++|+||||+|+.+++.....|. .+.... ...+
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~~---~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a~~-----~~~~ 75 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIEA---GRLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSAVT-----SGVK 75 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHHc---CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEeccc-----ccHH
Confidence 34566789999988777 8888865 44567889999999999999999998654432 122111 1112
Q ss_pred HhHHHhhhcCCCCchhHH-HHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEE--EecchH--HHHhhcCCCc
Q 047214 100 ILSEKLEVAGANIPHFTK-ERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVV--TTRDKR--VLEKFRGEKK 172 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilv--ttR~~~--~~~~~~~~~~ 172 (658)
.+.+++. ... ....+++.+|++|+++... ..+.++..+. .+..+++ ||.+.. +.........
T Consensus 76 ~ir~ii~--------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~ 144 (413)
T PRK13342 76 DLREVIE--------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQ 144 (413)
T ss_pred HHHHHHH--------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccce
Confidence 2222221 111 1124578899999998764 3455555433 2343443 344432 2233335568
Q ss_pred eEEcCCCChHHHHHHHHHHhcCCCCCC-chhHHHHHHHHHHcCCCcchhHHh
Q 047214 173 IYRVNGLEFEEAFEHFCNFAFEENHCP-EDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 173 ~~~l~~L~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
.+.+.+++.++..+++.+.+....... ...++..+.|++.++|.+..+..+
T Consensus 145 ~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 145 VFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred eeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999999988653211111 233456788999999998755433
No 44
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.91 E-value=9.2e-10 Score=99.32 Aligned_cols=122 Identities=20% Similarity=0.226 Sum_probs=38.9
Q ss_pred CCCCcEEEeecCcccCcchhhhcccCceecCCCCC-CcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccccc
Q 047214 385 MSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLD-YLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEG 463 (658)
Q Consensus 385 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~ 463 (658)
...++.|++.+|.|.. + +.++ .+. +|+.|++++|.|+.++....+++|+.|++++|.|+.+...
T Consensus 18 ~~~~~~L~L~~n~I~~-------------I-e~L~~~l~-~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST-------------I-ENLGATLD-KLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp --------------------------------S--TT-T-T--EEE-TTS--S--TT----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccc-------------c-cchhhhhc-CCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccc
Confidence 3456777777777621 1 2333 233 6777777777777776555677777777777777766544
Q ss_pred c-cCCCCccEEeccCCC--cccccC-CCcCCCccEEEeecCCcccccc----cccCCCCCCEEecc
Q 047214 464 K-KEAFKLKSINLSHCR--HFIDMS-YPSAPNLETYLLDYTNFACVPS----SIQNFKYLSALSFE 521 (658)
Q Consensus 464 ~-~~l~~L~~L~l~~~~--~~~~~~-l~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~ 521 (658)
+ ..+++|++|++++|. .+.++. ++.+++|++|++.+|.+..-+. .+..+|+|+.|+-.
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred hHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 3 346667777776663 122222 5566666666666665544332 34556666666543
No 45
>PF13173 AAA_14: AAA domain
Probab=98.89 E-value=6.3e-09 Score=90.32 Aligned_cols=121 Identities=21% Similarity=0.322 Sum_probs=84.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeC
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDD 131 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDd 131 (658)
.+++.|+|+.|+||||++++++++.. ....++++. ..+..... . . ..+..+.+.+....++.+++||+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~~~----~----~--~~~~~~~~~~~~~~~~~~i~iDE 69 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRDRR----L----A--DPDLLEYFLELIKPGKKYIFIDE 69 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHHHH----H----h--hhhhHHHHHHhhccCCcEEEEeh
Confidence 46899999999999999999998865 334455555 22211100 0 0 00023444444445789999999
Q ss_pred CCCchhhhhhhcccCCCCCCCEEEEEecchHHHHh-----hcCCCceEEcCCCChHHH
Q 047214 132 VNEVGQLEGLIGELDQFGPGSRIVVTTRDKRVLEK-----FRGEKKIYRVNGLEFEEA 184 (658)
Q Consensus 132 v~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~~~~-----~~~~~~~~~l~~L~~~~~ 184 (658)
+....+|...+..+.+..+..+|++|+.+...... ..+....+.+.||+..|.
T Consensus 70 iq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 70 IQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 99999999988888776678899999988765432 235566889999998763
No 46
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.86 E-value=3.4e-08 Score=106.33 Aligned_cols=185 Identities=15% Similarity=0.149 Sum_probs=118.8
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cc--------------------cC
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SE--------------------FE 81 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~--------------------f~ 81 (658)
.|..-++++|.+..++.|.+++... .-...+.++|..|+||||+|+.+++.+. +. |.
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~g--RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~ 88 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGG--RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFV 88 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCc
Confidence 3456678999999999999999753 2245667999999999999999999742 11 11
Q ss_pred ceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh--hhhhhcccCCCCCCCEEEEEec
Q 047214 82 GRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ--LEGLIGELDQFGPGSRIVVTTR 159 (658)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~ilvttR 159 (658)
.++++... ....++.+.+++... ...-..++.-++|||+++.... ++.++..+-+-....++|++|+
T Consensus 89 DviEIDAa----s~rgVDdIReLIe~a-------~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 89 DYVEMDAA----SNRGVDEMAALLERA-------VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred eEEEeccc----ccccHHHHHHHHHHH-------HhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 11111100 001111222211100 0001124556899999998764 7777777655455778887777
Q ss_pred chH-HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc-chhHH
Q 047214 160 DKR-VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP-LVPKV 222 (658)
Q Consensus 160 ~~~-~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~ 222 (658)
+.. +.....+.+..+.+.+++.++..+.+.+.+..+... -.++.+..|++.++|.. -++.+
T Consensus 158 d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 158 DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred ChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 653 333444667899999999999999998876544322 23456788999999865 35544
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.84 E-value=3.5e-08 Score=95.35 Aligned_cols=174 Identities=13% Similarity=0.163 Sum_probs=105.6
Q ss_pred CCCccc--ccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHH
Q 047214 27 SNGLVG--LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEK 104 (658)
Q Consensus 27 ~~~~vG--R~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~ 104 (658)
-+.|++ .+..++.+.+++.. ...+.+.|+|++|+|||++|+.+++...+.....+++. +...... .
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~-----~--- 81 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG---KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA-----D--- 81 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh-----H---
Confidence 345653 44466777777653 45678999999999999999999998655444455554 2221110 0
Q ss_pred hhhcCCCCchhHHHHhcCcceEEEEeCCCCch---hhh-hhhcccCC-CCCCCEEEEEecchHH---------HHhhcCC
Q 047214 105 LEVAGANIPHFTKERVRRMKVLIVLDDVNEVG---QLE-GLIGELDQ-FGPGSRIVVTTRDKRV---------LEKFRGE 170 (658)
Q Consensus 105 l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~~~-~l~~~l~~-~~~~~~ilvttR~~~~---------~~~~~~~ 170 (658)
..+.+.++. .-+||+||++... .|. .+...+.. ...+.++|+|++.... ...+ ..
T Consensus 82 ---------~~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~-~~ 150 (226)
T TIGR03420 82 ---------PEVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL-AW 150 (226)
T ss_pred ---------HHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH-hc
Confidence 111122222 3489999997654 222 33332221 1234578888875431 1122 23
Q ss_pred CceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhc
Q 047214 171 KKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGS 225 (658)
Q Consensus 171 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~ 225 (658)
...+.+.+++.++...++......... .-.++.++.|++.+.|+|..+..+..
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 468999999999999998775432221 22334567888888888877665544
No 48
>PRK06893 DNA replication initiation factor; Validated
Probab=98.82 E-value=6e-08 Score=93.26 Aligned_cols=151 Identities=17% Similarity=0.208 Sum_probs=92.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeC
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDD 131 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDd 131 (658)
.+.+.|+|++|+|||+|+..+++.+.+....+.|+. ...... . ...+.+.++ +.-+|++||
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~-~~~~~~-----~------------~~~~~~~~~-~~dlLilDD 99 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP-LSKSQY-----F------------SPAVLENLE-QQDLVCLDD 99 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee-HHHhhh-----h------------hHHHHhhcc-cCCEEEEeC
Confidence 457899999999999999999999665555566665 211000 0 011112222 335899999
Q ss_pred CCCc---hhhhh-hhcccCCC-CCCCEEEE-Eecc---------hHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCC
Q 047214 132 VNEV---GQLEG-LIGELDQF-GPGSRIVV-TTRD---------KRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEEN 196 (658)
Q Consensus 132 v~~~---~~~~~-l~~~l~~~-~~~~~ilv-ttR~---------~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~ 196 (658)
++.. ..|+. +...+... ..+..+++ |++. +.+.+.+ .....++++++++++.++++.+.+....
T Consensus 100 i~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl-~~g~~~~l~~pd~e~~~~iL~~~a~~~~ 178 (229)
T PRK06893 100 LQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRL-TWGEIYQLNDLTDEQKIIVLQRNAYQRG 178 (229)
T ss_pred hhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHH-hcCCeeeCCCCCHHHHHHHHHHHHHHcC
Confidence 9874 34542 22222221 23555554 4443 2344444 4567899999999999999998875443
Q ss_pred CCCchhHHHHHHHHHHcCCCcchhHHhh
Q 047214 197 HCPEDLNWHSQRVVEYADGNPLVPKVLG 224 (658)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~g~Plai~~~a 224 (658)
. .--++..+-|++.+.|..-.+..+-
T Consensus 179 l--~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 179 I--ELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred C--CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 2 2224456778888887765555443
No 49
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.81 E-value=1.6e-09 Score=107.31 Aligned_cols=278 Identities=21% Similarity=0.209 Sum_probs=186.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh-hHhHHHhhhcCCC---CchhHHHHhcCcce
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG-KILSEKLEVAGAN---IPHFTKERVRRMKV 125 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~---~~~~l~~~l~~~~~ 125 (658)
...+.+.++|.|||||||++-++.. +...|...+|+.+.....+...+ -.+...++....+ ....+...+.+++.
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~rr~ 90 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDRRA 90 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhhhH
Confidence 3468899999999999999999999 78889888888878887777655 3444444444333 36678888999999
Q ss_pred EEEEeCCCCchh-hhhhhcccCCCCCCCEEEEEecchHHHHhhcCCCceEEcCCCChH-HHHHHHHHHhcCCCC---CCc
Q 047214 126 LIVLDDVNEVGQ-LEGLIGELDQFGPGSRIVVTTRDKRVLEKFRGEKKIYRVNGLEFE-EAFEHFCNFAFEENH---CPE 200 (658)
Q Consensus 126 LlvlDdv~~~~~-~~~l~~~l~~~~~~~~ilvttR~~~~~~~~~~~~~~~~l~~L~~~-~~~~l~~~~~~~~~~---~~~ 200 (658)
++|+||.....+ -..+...+........|+.|+|..... ....+..+.+|+.. ++.++|...+..... -..
T Consensus 91 llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~----~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~ 166 (414)
T COG3903 91 LLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILV----AGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTD 166 (414)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcc----cccccccCCccccCCchhHHHHHHHHHhccceeecC
Confidence 999999977663 334444444446667888999865322 33457778888866 788888766532211 112
Q ss_pred hhHHHHHHHHHHcCCCcchhHHhhcccccccHHHHHHHHHH----HhhcC---CcchhhHHhhhhhhccCCChhhhchhc
Q 047214 201 DLNWHSQRVVEYADGNPLVPKVLGSSLCLKRKSHWENLLHD----LNRIC---ESDIHDIYKKLKITFDELTPRVQSIFL 273 (658)
Q Consensus 201 ~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~~~~----l~~~~---~~~~~~l~~~l~~s~~~L~~~~~~~l~ 273 (658)
.......+|.+..+|.|++|..++...+.-........++. +.... ......+...+.+||.-|..-.+-.+.
T Consensus 167 ~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~ 246 (414)
T COG3903 167 DNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWERALFG 246 (414)
T ss_pred CchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHHHHhc
Confidence 33446899999999999999999988876544333222221 11110 111134688899999999999999999
Q ss_pred eeeecCCCCCHHHHHHHhcc--------ccccchHHhhhccCceee----CCeEEeehHHHHHHHHHhhhc
Q 047214 274 DIACFFEGEDKDFVARILDD--------SESDGLDVLIDKSLISIS----GNCLQMHDLLQEMGQQIVRQE 332 (658)
Q Consensus 274 ~~a~fp~~~~~~~l~~~~~~--------~~~~~l~~L~~~~ll~~~----~~~~~~H~~v~~~~~~~~~~~ 332 (658)
.++.|...|+.+........ ....++..+++.+++... .-.|+.-+.++.|+.....+.
T Consensus 247 rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 247 RLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred chhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888743322222 122334556677766543 223455555666665555444
No 50
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=6e-10 Score=109.97 Aligned_cols=191 Identities=17% Similarity=0.110 Sum_probs=124.6
Q ss_pred CCCCccEEEecCCCcccccc--cccCCCCccEEeccCCCcccccC----CCcCCCccEEEeecCCccccccc--ccCCCC
Q 047214 443 KPENLVELNLHFSKVEQLWE--GKKEAFKLKSINLSHCRHFIDMS----YPSAPNLETYLLDYTNFACVPSS--IQNFKY 514 (658)
Q Consensus 443 ~l~~L~~L~L~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~--~~~l~~ 514 (658)
++++|+...|.++.+...+. ....+++++.|+++.|=.....| ...+|+|+.|+++.|.+.....+ -..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 67889999999988876664 57788999999999884322333 56789999999988887554322 235678
Q ss_pred CCEEeccCCCCCCcC--CC-CCCCCCCcEEeccCCCCcccc--C-cccCCccEEEcccccccccc--ccccCCCCCCEEe
Q 047214 515 LSALSFEGCKSLRSF--PS-NFRFVCPVTINFSSCVNLIEF--P-QISGKITRLYLGQSAIEEVP--SSIECLTDLEVLD 586 (658)
Q Consensus 515 L~~L~l~~~~~l~~~--~~-~~~~~~L~~L~l~~~~~l~~~--~-~~~~~L~~L~l~~~~i~~~~--~~~~~l~~L~~L~ 586 (658)
|+.|.+++|. ++.- .. ...+|+|+.|.+..|...... + ..+..|+.|+|++|.+-..+ .....+|.|..|+
T Consensus 199 lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 8888888883 3321 11 125788888888877433211 1 24567778888888777666 3367788888888
Q ss_pred cCCCccch-hhhhh-----hcCCCCCcEEeccCCcCCccCC------CCCCcccEEeccCCc
Q 047214 587 LRDCKRLK-RISTR-----FCKLRSLVDLFLHGCLNLQSLP------ALPLCLKSLDLRDCK 636 (658)
Q Consensus 587 l~~~~~~~-~~~~~-----~~~l~~L~~L~l~~~~~l~~l~------~l~~~L~~L~l~~~~ 636 (658)
++.|..-. ..|+. ...+++|+.|++..|+ +..|+ .+++ |+.|.+..++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~n-lk~l~~~~n~ 337 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLEN-LKHLRITLNY 337 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccch-hhhhhccccc
Confidence 88776322 12221 2456777777777765 22222 3555 6666665544
No 51
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.80 E-value=1.1e-07 Score=98.03 Aligned_cols=176 Identities=12% Similarity=0.170 Sum_probs=113.8
Q ss_pred CCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc--c-------------------Cc
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE--F-------------------EG 82 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~--f-------------------~~ 82 (658)
|..-++++|.+..++.+.+.+... .-...+.++|+.|+||||+|+.+++.+... . ..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~--~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d 89 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLG--RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLD 89 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcC--CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 445678999999999999988753 234567899999999999999999985311 1 01
Q ss_pred eEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEE
Q 047214 83 RCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIV 155 (658)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~il 155 (658)
..++.. .....++.+ +.+.+.+ .++.-++|+|+++... .++.++..+.......++|
T Consensus 90 ~~~~~~----~~~~~v~~i------------r~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fI 153 (363)
T PRK14961 90 LIEIDA----ASRTKVEEM------------REILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFI 153 (363)
T ss_pred eEEecc----cccCCHHHH------------HHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 111110 000011111 1222222 2345699999998876 3667777765545566677
Q ss_pred EEecch-HHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcch
Q 047214 156 VTTRDK-RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLV 219 (658)
Q Consensus 156 vttR~~-~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 219 (658)
++|.+. .+.....+.+..+.+.+++.++..+.+...+...+. .-.++.++.|++.++|.|-.
T Consensus 154 l~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~--~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 154 LATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI--DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred EEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 666544 344444466789999999999999988876644322 12234578899999998853
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.78 E-value=5.4e-09 Score=110.28 Aligned_cols=186 Identities=23% Similarity=0.338 Sum_probs=145.2
Q ss_pred eEEecccCCC-CCCCCCCCCCccEEEecCCCcccccccccCCC-CccEEeccCCCcccccC--CCcCCCccEEEeecCCc
Q 047214 427 YLHWDKYPLR-TLPSNFKPENLVELNLHFSKVEQLWEGKKEAF-KLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNF 502 (658)
Q Consensus 427 ~L~l~~~~l~-~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~-~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~ 502 (658)
.+.+..+.+. .......+..+..|++.+|.+..++.....+. +|+.|++++| .+..+| +..+++|+.|++..|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCchh
Confidence 4667777663 33333477889999999999999998888885 9999999999 667773 89999999999999999
Q ss_pred ccccccccCCCCCCEEeccCCCCCCcCCCCC-CCCCCcEEeccCCCCccccCc---ccCCccEEEccccccccccccccC
Q 047214 503 ACVPSSIQNFKYLSALSFEGCKSLRSFPSNF-RFVCPVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEEVPSSIEC 578 (658)
Q Consensus 503 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~~~~~~~~ 578 (658)
.++|...+..+.|+.|++++| .+..+|... ....|+.+.++++... ..+. ...++..|.+.+|.+..++..+..
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~ 253 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIGN 253 (394)
T ss_pred hhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchhcc
Confidence 999887778999999999987 788888875 4555888988886422 2222 234555677778888877777888
Q ss_pred CCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCC
Q 047214 579 LTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNL 617 (658)
Q Consensus 579 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 617 (658)
++++++|++++|. +..++. ++.+.+|+.|+++++...
T Consensus 254 l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 254 LSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred ccccceecccccc-cccccc-ccccCccCEEeccCcccc
Confidence 8889999999886 455554 778889999999886543
No 53
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.76 E-value=1.8e-07 Score=99.88 Aligned_cols=182 Identities=16% Similarity=0.127 Sum_probs=115.8
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-c--------------------cC
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-E--------------------FE 81 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~--------------------f~ 81 (658)
+|..-.+++|.+...+.|.+++... .-...+.++|+.|+||||+|+.+++.+.- . +.
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~g--rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hp 87 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERG--RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFI 87 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCC
Confidence 3456688999999999999999853 23467799999999999999999988421 1 11
Q ss_pred ceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEec
Q 047214 82 GRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTR 159 (658)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR 159 (658)
.++.+...+ ...++.+.+++... -..-..++.-++|+|+++... ....++..+-....+.++|++|.
T Consensus 88 DviEIDAAs----~~~VddIReli~~~-------~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 88 DLIEIDAAS----RTKVEDTRELLDNV-------PYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred ceEEecccc----cCCHHHHHHHHHHH-------hhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 111111000 01111122211100 000113556799999998765 46666666654445667777776
Q ss_pred chH-HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcch
Q 047214 160 DKR-VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLV 219 (658)
Q Consensus 160 ~~~-~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 219 (658)
+.. +.......+..+.+.+++.++..+.+.+.+...+. .-..+.+..|++.++|.+-.
T Consensus 157 d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI--~id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 157 DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI--AADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHH
Confidence 542 33233366789999999999999999887654432 22344578899999997743
No 54
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=1.7e-07 Score=103.18 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=115.4
Q ss_pred CCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc-c--------------------Cc
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-F--------------------EG 82 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f--------------------~~ 82 (658)
|..-.++||.+..++.|.+++... .=...+.++|+.|+||||+|+.+++.+... . ..
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~--rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~D 89 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQ--RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVD 89 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCce
Confidence 445678999999999999998763 223455899999999999999999984321 1 01
Q ss_pred eEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecc
Q 047214 83 RCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRD 160 (658)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~ 160 (658)
++++.. .....++.++++... ....-..++.-++|||+++... ..+.|+..+-.-....++|++|.+
T Consensus 90 viEidA----as~~kVDdIReLie~-------v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe 158 (944)
T PRK14949 90 LIEVDA----ASRTKVDDTRELLDN-------VQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD 158 (944)
T ss_pred EEEecc----ccccCHHHHHHHHHH-------HHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence 111110 000111222222110 0001123567899999998765 466766666543455666655544
Q ss_pred -hHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 161 -KRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 161 -~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
..+......++..+.+.+++.++..+++.+.+..... ....+.+..|++.++|.|-.+
T Consensus 159 ~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 159 PQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred chhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 4444444456789999999999999999887644322 223456788999999988533
No 55
>PLN03025 replication factor C subunit; Provisional
Probab=98.75 E-value=1.2e-07 Score=96.21 Aligned_cols=186 Identities=13% Similarity=0.204 Sum_probs=111.7
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh-ccccCceEEEeccccccccchhhHh
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSEFEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~l 101 (658)
.|..-.+++|.++.++.|.+++.. ++.+.+.++|++|+||||+|..+++.. ...|...+.- ... ++....+.+
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~---~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e--ln~-sd~~~~~~v 81 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARD---GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE--LNA-SDDRGIDVV 81 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceee--ecc-cccccHHHH
Confidence 455667899999999999888775 344567899999999999999999985 3333322111 111 111112222
Q ss_pred HHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh--hhhhhcccCCCCCCCEEEEEecch-HHHHhhcCCCceEEcCC
Q 047214 102 SEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ--LEGLIGELDQFGPGSRIVVTTRDK-RVLEKFRGEKKIYRVNG 178 (658)
Q Consensus 102 ~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~ilvttR~~-~~~~~~~~~~~~~~l~~ 178 (658)
.+.+........ ..-.++.-++|+|+++.... ...+...+......+++++++... .+.......+..+++.+
T Consensus 82 r~~i~~~~~~~~----~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~ 157 (319)
T PLN03025 82 RNKIKMFAQKKV----TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSR 157 (319)
T ss_pred HHHHHHHHhccc----cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCC
Confidence 222211000000 00023567999999987652 334443333223456777766443 33333334567899999
Q ss_pred CChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 179 LEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 179 L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
++.++..+.+...+..++..-+ ++.++.|++.++|..-.+
T Consensus 158 l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 158 LSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 9999999988887654433222 346788999999877443
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.74 E-value=1.7e-07 Score=96.64 Aligned_cols=193 Identities=14% Similarity=0.121 Sum_probs=113.5
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc-cCc-eEEEeccccccccc--hh
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-FEG-RCFLSDIRKNSETG--GG 98 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f~~-~~~~~~~~~~~~~~--~~ 98 (658)
.|..-..++|++..++.+.+++.. +..+.+.++|++|+||||+|+.+++.+... +.. .+.+. +.+..... .+
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~---~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~ 85 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDS---PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQGKKYL 85 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhcchhhh
Confidence 344557799999999999998875 334568899999999999999999985432 222 23333 22111000 00
Q ss_pred ---hHhHHHhhhc---CCCCchhHHHHh---------cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch
Q 047214 99 ---KILSEKLEVA---GANIPHFTKERV---------RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK 161 (658)
Q Consensus 99 ---~~l~~~l~~~---~~~~~~~l~~~l---------~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~ 161 (658)
.......+.. .....+.+++.+ ...+-++|+||++... ....+...+......+++|+|+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0000000000 000112222211 1335689999997664 2334444443334557788777543
Q ss_pred -HHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 162 -RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 162 -~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
.+..........+.+.+++.++..+++.+.+...... -.++.++.+++.++|.+-.+.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 2333333556788999999999999998876443322 234567889999988765544
No 57
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=1.8e-07 Score=99.62 Aligned_cols=178 Identities=12% Similarity=0.124 Sum_probs=115.2
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc-----------------------
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE----------------------- 79 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~----------------------- 79 (658)
+|..-.++||.+..++.|.+++... .-...+.++|+.|+||||+|+.+++.+-..
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~g--RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~ 88 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQ--RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEID 88 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHH
Confidence 4456678999999999999999863 224567899999999999999999984320
Q ss_pred ---cCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHH-----hcCcceEEEEeCCCCch--hhhhhhcccCCCC
Q 047214 80 ---FEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKER-----VRRMKVLIVLDDVNEVG--QLEGLIGELDQFG 149 (658)
Q Consensus 80 ---f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~ 149 (658)
|..++.+... ....++.+ +.+.+. ..++.-++|||+++... .++.|+..+-.-.
T Consensus 89 aG~hpDviEIdAa----s~~gVDdI------------ReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 89 AGRFVDYIEMDAA----SNRGVDEM------------AQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred cCCCCcceEeccc----ccCCHHHH------------HHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 0011111100 00011111 112222 13456799999998875 4677777665444
Q ss_pred CCCEEEEEec-chHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 150 PGSRIVVTTR-DKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 150 ~~~~ilvttR-~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
.+.++|++|. ...+.....+.+..+.+..++.++..+.+.+.+..+... ...+.++.|++.++|.|...
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 5566555554 444554544667899999999999999888776443222 22345688999999998643
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=98.70 E-value=3.6e-07 Score=98.20 Aligned_cols=186 Identities=16% Similarity=0.180 Sum_probs=116.7
Q ss_pred CCCCCCCcccccchHhhHHHHhcccC-CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHh
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~-~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 101 (658)
.|..-.+++|+++.++.+.+|+.... +...+.+.|+|++|+||||+|..+++.+. |+ ++.+. .++ ......+
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~-~ieln-asd---~r~~~~i 81 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE-VIELN-ASD---QRTADVI 81 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEc-ccc---cccHHHH
Confidence 45667889999999999999997532 12367899999999999999999999863 22 22222 111 1111223
Q ss_pred HHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh------hhhhhcccCCCCCCCEEEEEecchH-HHH-hhcCCCce
Q 047214 102 SEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ------LEGLIGELDQFGPGSRIVVTTRDKR-VLE-KFRGEKKI 173 (658)
Q Consensus 102 ~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~~~l~~~l~~~~~~~~ilvttR~~~-~~~-~~~~~~~~ 173 (658)
.+.+...... ......++.+||+|+++.... +..+...+. ..+..||+++.+.. ... .....+..
T Consensus 82 ~~~i~~~~~~-----~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~ 154 (482)
T PRK04195 82 ERVAGEAATS-----GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLM 154 (482)
T ss_pred HHHHHHhhcc-----CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceE
Confidence 3322211100 001113678999999977532 555555444 33455777765432 211 23345678
Q ss_pred EEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhh
Q 047214 174 YRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLG 224 (658)
Q Consensus 174 ~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a 224 (658)
+.+.+++.++....+.+.+....... .++....|++.++|..-.+....
T Consensus 155 I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 155 IEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999998888765443322 24568999999999776554433
No 59
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=3.6e-07 Score=94.88 Aligned_cols=192 Identities=11% Similarity=0.084 Sum_probs=114.6
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-ccCceEEEecccccc---ccchh
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGRCFLSDIRKNS---ETGGG 98 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~---~~~~~ 98 (658)
.|..-.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++.+.. ..........+..+. .....
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~r--i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGK--IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISS 90 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCC--CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCc
Confidence 44566789999999999999988631 2346789999999999999999998432 111100000000000 00000
Q ss_pred hHhH-HHhhhcCCCCchhHHHH-----hcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEe-cchHHHHhhcC
Q 047214 99 KILS-EKLEVAGANIPHFTKER-----VRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTT-RDKRVLEKFRG 169 (658)
Q Consensus 99 ~~l~-~~l~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvtt-R~~~~~~~~~~ 169 (658)
+.+. ......+.+..+.+.+. ..++.-++|+|+++... .++.++..+-.-.....+|++| ....+......
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 0000 00000000011222222 23456799999998775 4777777765433445545444 44445444446
Q ss_pred CCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 170 EKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 170 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
.+..+.+.+++.++..+.+.+.+...+. .-.++.+..|++.++|.+-
T Consensus 171 RCq~~~f~~ls~~~i~~~L~~i~~~Egi--~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 171 RCQDFIFKKVPLSVLQDYSEKLCKIENV--QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred hhheeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCChHH
Confidence 6789999999999999998887644332 2234567889999999884
No 60
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=9.1e-07 Score=90.51 Aligned_cols=194 Identities=16% Similarity=0.128 Sum_probs=115.8
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh-cccc-Cce--------EEEec-ccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSEF-EGR--------CFLSD-IRK 91 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~f-~~~--------~~~~~-~~~ 91 (658)
+|....+++|.+...+.+.+.+... .-...+.++|+.|+||+++|..+++.+ ++.. ... .-++. .+.
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG--RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 5667788999999999999988763 224568899999999999999999983 2221 100 00000 000
Q ss_pred c-----cccchhhHhHHHhhhcC----CCC----chhHHHHhc-----CcceEEEEeCCCCch--hhhhhhcccCCCCCC
Q 047214 92 N-----SETGGGKILSEKLEVAG----ANI----PHFTKERVR-----RMKVLIVLDDVNEVG--QLEGLIGELDQFGPG 151 (658)
Q Consensus 92 ~-----~~~~~~~~l~~~l~~~~----~~~----~~~l~~~l~-----~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~ 151 (658)
+ .....+..+.-.....+ ... .+.+.+.+. +.+.++|+|+++... ....++..+-.-..+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 0 00000000000000000 001 222333332 456799999997765 355666655543445
Q ss_pred CEEEEEecch-HHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhh
Q 047214 152 SRIVVTTRDK-RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLG 224 (658)
Q Consensus 152 ~~ilvttR~~-~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a 224 (658)
..+|++|.+. .+.....+.+..+.+.+++.++..+++.+.... ...+....+++.++|.|.....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~------~~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD------LPDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc------CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 6667777665 344444567889999999999999999876421 111223678999999998655443
No 61
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=2.1e-09 Score=100.90 Aligned_cols=123 Identities=17% Similarity=0.172 Sum_probs=71.1
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccccccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKK 465 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~ 465 (658)
..|..|++++|.| ..+.++++-+| .++.|++++|++..+.+...+.+|+.||||+|.++++-.+-.
T Consensus 284 q~LtelDLS~N~I-------------~~iDESvKL~P-kir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 284 QELTELDLSGNLI-------------TQIDESVKLAP-KLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHL 349 (490)
T ss_pred hhhhhccccccch-------------hhhhhhhhhcc-ceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHh
Confidence 4556666666665 33445555555 666666666666666554466666666666666655533334
Q ss_pred CCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCccccc--ccccCCCCCCEEeccCC
Q 047214 466 EAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVP--SSIQNFKYLSALSFEGC 523 (658)
Q Consensus 466 ~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~ 523 (658)
++.+.++|.+++| .+.++. ++++-+|..||+.+|+++.+. .+++++|.|+++.+.+|
T Consensus 350 KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 350 KLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhcCEeeeehhhh-hHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 4556666666665 444555 555555666666666554432 34555666666655555
No 62
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.66 E-value=4.7e-07 Score=92.59 Aligned_cols=182 Identities=16% Similarity=0.266 Sum_probs=110.3
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-ccCceEEEeccccccccchhhHh
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l 101 (658)
.|..-..++|+++.++.+.+++.. +..+.+.++|++|+|||++|+.+++.... .+... ++. +... +......+
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~---~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~-~i~-~~~~-~~~~~~~~ 85 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKE---KNMPHLLFAGPPGTGKTTAALALARELYGEDWREN-FLE-LNAS-DERGIDVI 85 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccc-eEE-eccc-cccchHHH
Confidence 344557799999999999999975 33445799999999999999999998532 22221 111 1110 11111111
Q ss_pred HHHhhhcCCCCchhHHHH--h-cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHHhhcCCCceEE
Q 047214 102 SEKLEVAGANIPHFTKER--V-RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLEKFRGEKKIYR 175 (658)
Q Consensus 102 ~~~l~~~~~~~~~~l~~~--l-~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~~~~~~~~~~~ 175 (658)
.+.+. .+... . ...+-++++|+++... ..+.+...+......+.+|+++... ............+.
T Consensus 86 ~~~i~--------~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 157 (319)
T PRK00440 86 RNKIK--------EFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157 (319)
T ss_pred HHHHH--------HHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheee
Confidence 11110 00000 0 1235689999987654 2445555444434556777776443 22222223456789
Q ss_pred cCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 176 VNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 176 l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
+.+++.++....+...+...+.. -.++.+..+++.++|.+-.+
T Consensus 158 ~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 158 FSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 99999999999888876543322 22446788999999987653
No 63
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.66 E-value=3.2e-07 Score=97.72 Aligned_cols=192 Identities=17% Similarity=0.092 Sum_probs=116.4
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc--cccCceEEEeccccccc----cc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS--SEFEGRCFLSDIRKNSE----TG 96 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~--~~f~~~~~~~~~~~~~~----~~ 96 (658)
.|..-++++|.+...+.|.+++... .-...+.++|++|+||||+|+.+++.+. +.+...+|.+ .++... ..
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~--~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C-~sc~~i~~~~h~ 85 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQG--RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGEC-ESCLAVRRGAHP 85 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcC-hhhHHHhcCCCC
Confidence 3455678999999999999988763 2345669999999999999999999853 2222222221 000000 00
Q ss_pred hhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHHhhc
Q 047214 97 GGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLEKFR 168 (658)
Q Consensus 97 ~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~~~~ 168 (658)
.+..+... .....+..+.+.+.+ .+++-++|+|+++... .++.++..+........+|+++... .+.....
T Consensus 86 dv~el~~~-~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 86 DVLEIDAA-SNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred ceEEeccc-ccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 00000000 000000022222222 2456799999998664 4777777765544555656555443 3433443
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 169 GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 169 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
..+..+.+.+++.++..+.+.+.+...+.. ..++.+..|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~egi~--i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEGRE--AEPEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 567899999999999999998876444322 23456788999999988544
No 64
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=7.7e-07 Score=95.01 Aligned_cols=184 Identities=14% Similarity=0.134 Sum_probs=113.9
Q ss_pred CCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc---------------------cCc
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---------------------FEG 82 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~---------------------f~~ 82 (658)
|..=.+++|.+..++.+..++... .-...+.++|+.|+||||+|+.+++.+... |..
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~--rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~d 89 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQ--KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFID 89 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCc
Confidence 445678999999999999999753 234567899999999999999999874311 111
Q ss_pred eEEEeccccccccchhhHhHHHhhhcCCCCchhHHH-HhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEec
Q 047214 83 RCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKE-RVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTR 159 (658)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR 159 (658)
.+++... ....++.+.+++. .+.. -..+++-++|+|+++... ..+.++..+-.......+|++|.
T Consensus 90 lieidaa----s~~gvd~ir~ii~--------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 90 LIEIDAA----SRTGVEETKEILD--------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred eEEeecc----cccCHHHHHHHHH--------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 2221100 0011111111111 1110 123456799999998665 46677766655445565655444
Q ss_pred c-hHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc-hhHHh
Q 047214 160 D-KRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL-VPKVL 223 (658)
Q Consensus 160 ~-~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 223 (658)
+ ..+.......+..+++.+++.++..+.+.+.+...+. +..++.+..|++.++|.+- |+..+
T Consensus 158 d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 3344344466789999999999998888876543322 2234457889999998664 44443
No 65
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.63 E-value=4.9e-07 Score=98.16 Aligned_cols=167 Identities=15% Similarity=0.130 Sum_probs=92.7
Q ss_pred CCCCcccccchHhhHHHHhccc--CCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-----ccC--ceEEEeccccccccc
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-----EFE--GRCFLSDIRKNSETG 96 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~--~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-----~f~--~~~~~~~~~~~~~~~ 96 (658)
.++.+.|||+|+++|...|... ......++.|+|++|+|||+.++.+.+.+.+ ..+ .++++.+........
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 3468999999999999988742 1133457789999999999999999987532 111 234454322222222
Q ss_pred hhhHhHHHh-hhcCCC---CchhH---HHHh-c--CcceEEEEeCCCCchh-----hhhhhcccCCCCCCCEEEE--Eec
Q 047214 97 GGKILSEKL-EVAGAN---IPHFT---KERV-R--RMKVLIVLDDVNEVGQ-----LEGLIGELDQFGPGSRIVV--TTR 159 (658)
Q Consensus 97 ~~~~l~~~l-~~~~~~---~~~~l---~~~l-~--~~~~LlvlDdv~~~~~-----~~~l~~~l~~~~~~~~ilv--ttR 159 (658)
.+..+.+.+ +..... ..+.+ .+.+ + +...+||||+++.... +-.+..... ..+++|++ ++.
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiLIGISN 910 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVLIAISN 910 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEEEEecC
Confidence 223333333 211111 12222 2222 1 1246999999976541 222222211 23455543 343
Q ss_pred chH----HHHhhcC--CCceEEcCCCChHHHHHHHHHHhcC
Q 047214 160 DKR----VLEKFRG--EKKIYRVNGLEFEEAFEHFCNFAFE 194 (658)
Q Consensus 160 ~~~----~~~~~~~--~~~~~~l~~L~~~~~~~l~~~~~~~ 194 (658)
... +...+.. ....+...|++.++..+.+..++..
T Consensus 911 dlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 911 TMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred chhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 221 1111111 1234778999999999999988753
No 66
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=5.5e-07 Score=95.17 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=112.5
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-c---c-----------------C
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-E---F-----------------E 81 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~---f-----------------~ 81 (658)
+|..-.+++|.+...+.+.+.+... .-...+.++|++|+||||+|+.+++.+.. . + .
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~--~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~ 86 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKN--SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFM 86 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCC
Confidence 4456788999998888888887753 22356889999999999999999987432 1 0 0
Q ss_pred ceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHH-----hcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEE
Q 047214 82 GRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKER-----VRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRI 154 (658)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~i 154 (658)
.++.+.+. ....++.+. .+.+. ..+++-++|+|+++... ..+.++..+........+
T Consensus 87 dv~el~aa----~~~gid~iR------------~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 87 DVIELDAA----SNRGIDEIR------------KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred ccEEEeCc----ccCCHHHHH------------HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 11111100 001111111 12222 22456799999997654 356666665443334444
Q ss_pred EEEecc-hHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCC-cchhHHhhc
Q 047214 155 VVTTRD-KRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGN-PLVPKVLGS 225 (658)
Q Consensus 155 lvttR~-~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~a~ 225 (658)
|++|.+ ..+.......+..+.+.+++.++....+.+.+..... .-.++.+..|++.++|. +.++..+-.
T Consensus 151 Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi--~i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 151 VLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI--EIDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444443 3455555567789999999999999988887643322 22244678888888765 455555543
No 67
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=7.4e-07 Score=94.53 Aligned_cols=185 Identities=17% Similarity=0.180 Sum_probs=114.4
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc--cC-------ceEEEe------
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE--FE-------GRCFLS------ 87 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~--f~-------~~~~~~------ 87 (658)
.|..-.+++|.+..++.+...+... .-.+.+.++|+.|+||||+|+.+++.+... .. +.....
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~--ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~ 93 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILND--RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNN 93 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhc
Confidence 4456678999999999998877653 234678899999999999999999984221 00 000000
Q ss_pred ----ccccc--cccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEE-Ee
Q 047214 88 ----DIRKN--SETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVV-TT 158 (658)
Q Consensus 88 ----~~~~~--~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilv-tt 158 (658)
++.+. .....++.+.+++... ...-..+++.++|+|+++... .++.++..+........+|+ ||
T Consensus 94 ~~h~Dv~eidaas~~~vd~Ir~iie~a-------~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt 166 (507)
T PRK06645 94 HNHPDIIEIDAASKTSVDDIRRIIESA-------EYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166 (507)
T ss_pred CCCCcEEEeeccCCCCHHHHHHHHHHH-------HhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence 00000 0000111111111100 000123456799999998864 47777777665445556554 45
Q ss_pred cchHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 159 RDKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 159 R~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
+...+.......+..+.+.+++.++..+.+.+.+..+... ..++.+..|++.++|.+-
T Consensus 167 e~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSAR 224 (507)
T ss_pred ChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 5555555554567889999999999999998887544322 224457889999999774
No 68
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.62 E-value=1.4e-07 Score=95.52 Aligned_cols=62 Identities=19% Similarity=0.354 Sum_probs=28.7
Q ss_pred cCCCCccEEeccCCCcccccCCCcCCCccEEEeec-CCcccccccccCCCCCCEEeccCCCCCCcCC
Q 047214 465 KEAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDY-TNFACVPSSIQNFKYLSALSFEGCKSLRSFP 530 (658)
Q Consensus 465 ~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 530 (658)
..+.+++.|++++| .+..+| .-.++|++|.+.+ +++..+|..+ .++|++|.+++|..+..+|
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP-VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC-CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 34456666666666 444444 1112355555544 3344444322 1345555555554444443
No 69
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.61 E-value=4.4e-07 Score=97.91 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=113.3
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc--c-------------------C
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE--F-------------------E 81 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~--f-------------------~ 81 (658)
.|..-.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+++.+... . .
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~--rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~ 88 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEG--RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYV 88 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCcc
Confidence 3455678999999999999999863 234678999999999999999999873211 0 0
Q ss_pred ceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh--hhhhhcccCCCCCCCEEEEEec
Q 047214 82 GRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ--LEGLIGELDQFGPGSRIVVTTR 159 (658)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~ilvttR 159 (658)
.++.+.. .....++.+.+++... ... -..++.-++|+|+++.... ...++..+-......++|++|.
T Consensus 89 DvlEida----As~~gVd~IRelle~a------~~~-P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 89 DLLEIDA----ASNTGIDNIREVLENA------QYA-PTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred ceEEEec----cccCCHHHHHHHHHHH------Hhh-hhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 0111110 0001111111111100 000 0124567999999987653 5556666544345667777765
Q ss_pred ch-HHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 160 DK-RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 160 ~~-~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
+. .+.....+.+..+.+.+++.++..+.+.+.+...+.. ..++.+..|++.++|.+.-+
T Consensus 158 d~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred CccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHH
Confidence 44 2322323556788999999999999998877544332 23446789999999988533
No 70
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.60 E-value=1.2e-06 Score=90.90 Aligned_cols=181 Identities=13% Similarity=0.151 Sum_probs=114.6
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc----cC-----------------
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE----FE----------------- 81 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~----f~----------------- 81 (658)
+|..-.+++|.+..++.+.+++... .-...+.++|++|+|||++|+.+++.+... +.
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~--~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 86 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNG--RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSL 86 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 3445678999999999999999753 234578899999999999999999884311 10
Q ss_pred ceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEE
Q 047214 82 GRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRI 154 (658)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~i 154 (658)
..+++.... ....+.+.+ +.+.+ .+++-++|+|+++... ....++..+........+
T Consensus 87 ~~~~~~~~~----~~~~~~~~~------------l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 87 DVIEIDAAS----NNGVDDIRE------------ILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred CEEEeeccc----cCCHHHHHH------------HHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 111111000 000111111 21211 2345689999997663 466676666443455666
Q ss_pred EEEecchH-HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHh
Q 047214 155 VVTTRDKR-VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 155 lvttR~~~-~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
|++|.+.. +..........+.+.+++.++..+.+..++...+.. -.++.+..+++.++|.|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~--i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK--IEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCChHHHHHH
Confidence 67765543 334443556788999999999999988766433322 22456788999999988655443
No 71
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.60 E-value=7.5e-07 Score=96.57 Aligned_cols=182 Identities=15% Similarity=0.155 Sum_probs=113.6
Q ss_pred CCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc---------------------cCc
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---------------------FEG 82 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~---------------------f~~ 82 (658)
|..-.++||.+..++.|.+.+... .-...+.++|+.|+||||+|+.+++.+-.. |..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~--rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D 89 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLG--RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVD 89 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCC
Confidence 445678999999999999988763 223456899999999999999999884221 111
Q ss_pred eEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecc
Q 047214 83 RCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRD 160 (658)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~ 160 (658)
.+.+... ....++.+.+++.. ....-..++.-++|||+++... ..+.++..+-.-....++|++|.+
T Consensus 90 ~ieidaa----s~~~VddiR~li~~-------~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~ 158 (647)
T PRK07994 90 LIEIDAA----SRTKVEDTRELLDN-------VQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (647)
T ss_pred ceeeccc----ccCCHHHHHHHHHH-------HHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCC
Confidence 1111100 00111112221110 0001123566799999998765 466666665543445556555544
Q ss_pred -hHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 161 -KRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 161 -~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
..+.......+..+.+.+++.++..+.+.+.+..+.. ...++....|++.++|.+-..
T Consensus 159 ~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i--~~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 159 PQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI--PFEPRALQLLARAADGSMRDA 217 (647)
T ss_pred ccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 4444444456789999999999999999887643322 222445788999999987633
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=6.8e-07 Score=93.99 Aligned_cols=181 Identities=17% Similarity=0.202 Sum_probs=115.4
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-c--------------------ccC
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-S--------------------EFE 81 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~--------------------~f~ 81 (658)
.|..=.++||.+..++.+.+.+... .-.+.+.++|+.|+||||+|+.+++.+- . .+.
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~--ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~ 85 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLN--KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHP 85 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCC
Confidence 3456678999999999998888753 2245788999999999999999998631 1 112
Q ss_pred ceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEe-
Q 047214 82 GRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTT- 158 (658)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvtt- 158 (658)
.++.+...+ ...++.+.+++.... ..-..++.-++|+|+++... ..+.++..+-.-.+...+|++|
T Consensus 86 Dv~eidaas----~~~vddIR~Iie~~~-------~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 86 DVIEIDAAS----NTSVDDIKVILENSC-------YLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred CEEEEeccc----CCCHHHHHHHHHHHH-------hccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 222222110 111222222221100 00012456799999998765 3666766665545566666555
Q ss_pred cchHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 159 RDKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 159 R~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
....+.......+..+.+.+++.++..+.+.+.+..++.. -.++.+..|++.++|.+-
T Consensus 155 e~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 155 EVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMR 212 (491)
T ss_pred ChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 4445555554677899999999999999998876544332 224457889999998775
No 73
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.59 E-value=6.2e-07 Score=86.86 Aligned_cols=178 Identities=13% Similarity=0.221 Sum_probs=108.4
Q ss_pred CCCCCCCcccccchHh---hHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhh
Q 047214 23 ATDSSNGLVGLNSRIE---QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGK 99 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~---~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 99 (658)
.|..-.++||.+..+. .|.++++. +..+.+.+||++|+||||||+-++..-+.+- ..|+. ++- .....+
T Consensus 133 RPktL~dyvGQ~hlv~q~gllrs~ieq---~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSA--t~a~t~ 204 (554)
T KOG2028|consen 133 RPKTLDDYVGQSHLVGQDGLLRSLIEQ---NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSA--TNAKTN 204 (554)
T ss_pred CcchHHHhcchhhhcCcchHHHHHHHc---CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-Eec--cccchH
Confidence 3456677888887664 34455554 6788899999999999999999999876652 22332 221 112223
Q ss_pred HhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEE--EEecchH--HHHhhcCCCce
Q 047214 100 ILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIV--VTTRDKR--VLEKFRGEKKI 173 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~il--vttR~~~--~~~~~~~~~~~ 173 (658)
-+..++. ..+-...+.+++.+|++|+|+.-. +-+.+++ ....|.-++ .||.++. +-..+-..+.+
T Consensus 205 dvR~ife------~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP---~VE~G~I~lIGATTENPSFqln~aLlSRC~V 275 (554)
T KOG2028|consen 205 DVRDIFE------QAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLP---HVENGDITLIGATTENPSFQLNAALLSRCRV 275 (554)
T ss_pred HHHHHHH------HHHHHHhhhcceeEEEeHHhhhhhhhhhhcccc---eeccCceEEEecccCCCccchhHHHHhccce
Confidence 3333332 122234456789999999996544 3344433 233455444 3677663 22233367899
Q ss_pred EEcCCCChHHHHHHHHHHhc--CC-CC-----CC---chhHHHHHHHHHHcCCCc
Q 047214 174 YRVNGLEFEEAFEHFCNFAF--EE-NH-----CP---EDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 174 ~~l~~L~~~~~~~l~~~~~~--~~-~~-----~~---~~~~~~~~~i~~~~~g~P 217 (658)
+.|++|..++...++++... ++ .. +. .....+.+-++..|.|..
T Consensus 276 fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 276 FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 99999999999998887432 11 11 11 122345566777777765
No 74
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.2e-06 Score=87.26 Aligned_cols=197 Identities=11% Similarity=0.094 Sum_probs=116.6
Q ss_pred cCCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc----cCceEEEeccccccc---
Q 047214 22 VATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE----FEGRCFLSDIRKNSE--- 94 (658)
Q Consensus 22 ~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~----f~~~~~~~~~~~~~~--- 94 (658)
.+|..-..++|-+.....+...+... .-...+.|+|+.|+||||+|..+++.+-.. +..............
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g--rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG--KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC--CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 36777889999999999999998753 234578899999999999999999984331 111100000000000
Q ss_pred -----cchhhHhHHHhhhcC----C----CCchhHHHHhc-----CcceEEEEeCCCCch--hhhhhhcccCCCCCCCEE
Q 047214 95 -----TGGGKILSEKLEVAG----A----NIPHFTKERVR-----RMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRI 154 (658)
Q Consensus 95 -----~~~~~~l~~~l~~~~----~----~~~~~l~~~l~-----~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~i 154 (658)
...+..+..-..... . +..+.+.+.+. ++.-++|+|+++... ..+.++..+-.-..+..+
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 000000000000000 0 00223333332 456799999998765 355555555433344554
Q ss_pred EEEe-cchHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhh
Q 047214 155 VVTT-RDKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLG 224 (658)
Q Consensus 155 lvtt-R~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a 224 (658)
|++| +...+.....+.+..+.+.+++.++..+++.+...... ..++.+..+++.++|.|.....+.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4444 43344444446678999999999999999987532111 223457889999999998555443
No 75
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.56 E-value=4.1e-07 Score=81.26 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=72.2
Q ss_pred ccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCC
Q 047214 31 VGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGA 110 (658)
Q Consensus 31 vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 110 (658)
+||+..+..+...+.. ...+.+.|+|++|+|||++++++++.+...-..++++. .................
T Consensus 1 ~~~~~~~~~i~~~~~~---~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~----- 71 (151)
T cd00009 1 VGQEEAIEALREALEL---PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEGLVVAELFGHF----- 71 (151)
T ss_pred CchHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhhhHHHHHhhhh-----
Confidence 4788888899888865 34568999999999999999999998754334445544 33222211110000000
Q ss_pred CCchhHHHHhcCcceEEEEeCCCCc--h---hhhhhhcccCCC---CCCCEEEEEecchH
Q 047214 111 NIPHFTKERVRRMKVLIVLDDVNEV--G---QLEGLIGELDQF---GPGSRIVVTTRDKR 162 (658)
Q Consensus 111 ~~~~~l~~~l~~~~~LlvlDdv~~~--~---~~~~l~~~l~~~---~~~~~ilvttR~~~ 162 (658)
............++.++|+||++.. . .+..+....... ..+..+|+|+....
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999864 1 233333333221 35778888888643
No 76
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.4e-06 Score=88.31 Aligned_cols=179 Identities=17% Similarity=0.217 Sum_probs=113.3
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-----ccCceEEEeccccccccchhhHhH
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-----EFEGRCFLSDIRKNSETGGGKILS 102 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-----~f~~~~~~~~~~~~~~~~~~~~l~ 102 (658)
++++|.+..++.+.+++..+ .-.....++|+.|+|||++|..+++.+.. .+.....+.... .....++.+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~--~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--~~~i~v~~ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN--RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--KKSIGVDDIR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC--CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc--CCCCCHHHHH
Confidence 45789998899999998753 33567789999999999999999997421 122222222111 1111112233
Q ss_pred HHhhhcCCCCchhHHHHhcCcceEEEEeCCCCc--hhhhhhhcccCCCCCCCEEEEEecchH-HHHhhcCCCceEEcCCC
Q 047214 103 EKLEVAGANIPHFTKERVRRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKR-VLEKFRGEKKIYRVNGL 179 (658)
Q Consensus 103 ~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~~~~~~~~~l~~L 179 (658)
+....... .-..+++-++|+|+++.. +.++.++..+.+-..++.+|++|.+.. +.......+..+.+.++
T Consensus 80 ~~~~~~~~-------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~ 152 (313)
T PRK05564 80 NIIEEVNK-------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRL 152 (313)
T ss_pred HHHHHHhc-------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCc
Confidence 32211000 011245667788877554 458888888876667888888876653 33333456789999999
Q ss_pred ChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHh
Q 047214 180 EFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 180 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
+.++..+.+.+...+ ..++.++.++..++|.|..+...
T Consensus 153 ~~~~~~~~l~~~~~~------~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 153 SKEEIEKFISYKYND------IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred CHHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999998888765421 11233678899999988655433
No 77
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=8.4e-07 Score=92.73 Aligned_cols=192 Identities=14% Similarity=0.147 Sum_probs=113.5
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-c-cCceEEEe----cccccc---
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-E-FEGRCFLS----DIRKNS--- 93 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~-f~~~~~~~----~~~~~~--- 93 (658)
.|..-.+++|.+..++.|.+++... .-...+.++|+.|+||||+|..+++.+.- . +....|.. .+..+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~--~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~ 88 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMG--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCR 88 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhC--CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHH
Confidence 4456688999999999999988763 22345889999999999999999998432 1 11100000 000000
Q ss_pred ---ccchhhHhHHHhhhcCC---CCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEe-c
Q 047214 94 ---ETGGGKILSEKLEVAGA---NIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTT-R 159 (658)
Q Consensus 94 ---~~~~~~~l~~~l~~~~~---~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvtt-R 159 (658)
.....+.. . +..... +..+.+.+.+ .+.+-++|+|+++... .++.++..+....+...+|++| +
T Consensus 89 ~~~~~~~~n~~-~-~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 89 DFDAGTSLNIS-E-FDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHhcCCCCCeE-e-ecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00000000 0 000000 0022223333 2345689999998664 5777777765544566666555 4
Q ss_pred chHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 160 DKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
...+.......+..+++.+++.++..+.+.+.+..... .-.++.++.|++.++|.+--+
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHH
Confidence 34444443345578899999999999888876633321 223456889999999987533
No 78
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.6e-06 Score=93.92 Aligned_cols=192 Identities=15% Similarity=0.127 Sum_probs=112.7
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cccC--ceEEEeccccc------c
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEFE--GRCFLSDIRKN------S 93 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~--~~~~~~~~~~~------~ 93 (658)
.|..=+++||.+..++.|.+++... .-...+.++|+.|+||||+|+.+++.+- ..-+ ...-...+..+ .
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~--rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~ 88 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQ--RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDID 88 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHH
Confidence 3455678999999999999998863 2345678999999999999999988732 1100 00000000000 0
Q ss_pred ccchhhHhHHHhhhcCCCCchhHHHHh--------cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecc-hH
Q 047214 94 ETGGGKILSEKLEVAGANIPHFTKERV--------RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRD-KR 162 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~~~l~~~l--------~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~-~~ 162 (658)
.....+.+ . +........+.+++.+ .++.-++|||+++... .++.++..+-.......+|++|.+ ..
T Consensus 89 ~g~h~D~~-e-ldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 89 SGRFVDYT-E-LDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred cCCCCcee-e-cCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 00000000 0 0000000012222222 2345699999998876 466677666544455566655543 34
Q ss_pred HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 163 VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 163 ~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
+.......+..+.+.+++.++..+.+.+.+...+... ..+.+..|++.++|.+--+
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDA 222 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 4333446678999999999999999988764443322 2346788899999877433
No 79
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.54 E-value=1.9e-06 Score=88.84 Aligned_cols=174 Identities=12% Similarity=0.088 Sum_probs=108.7
Q ss_pred CCcccccchHhhHHHHhcccCC-------CCeEEEEEEcCCCCcHHHHHHHHHHhhcccc--------------------
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLS-------DTVQIVGIWGMGGIGKTTLATAIFNQFSSEF-------------------- 80 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~-------~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f-------------------- 80 (658)
..++|.+..++.|.+++....+ .-...+.++|++|+|||++|..+++.+--..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 3588999999999999986320 0356788999999999999999998732111
Q ss_pred CceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCE
Q 047214 81 EGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSR 153 (658)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ 153 (658)
+...++. .......++.+. .+.+.+ .+++-++|+|+++... ....++..+-....+..
T Consensus 85 pD~~~i~---~~~~~i~i~~iR------------~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~ 149 (394)
T PRK07940 85 PDVRVVA---PEGLSIGVDEVR------------ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTV 149 (394)
T ss_pred CCEEEec---cccccCCHHHHH------------HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCe
Confidence 1111111 000001111122 222222 2445689999998765 34556665544344565
Q ss_pred EEEEecch-HHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHh
Q 047214 154 IVVTTRDK-RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 154 ilvttR~~-~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
+|++|.+. .+.....+.+..+.+.+++.++..+.+.+... . .++.+..+++.++|.|.....+
T Consensus 150 fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---~----~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 150 WLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---V----DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred EEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---C----CHHHHHHHHHHcCCCHHHHHHH
Confidence 66655554 45555556778999999999999988875421 1 1344778999999999654433
No 80
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.54 E-value=8.1e-07 Score=98.41 Aligned_cols=173 Identities=21% Similarity=0.328 Sum_probs=104.4
Q ss_pred CCCCCCcccccchHh---hHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 24 TDSSNGLVGLNSRIE---QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~---~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
|..-++|+|++..+. .+.+.+.. ++...+.++|++|+||||+|+.+++.....|. .+.+.. ..++.
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~---~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~~-----~~i~d 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA---DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAVL-----AGVKD 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhhh-----hhhHH
Confidence 455678999998884 56666665 44667889999999999999999988665542 122110 11111
Q ss_pred hHHHhhhcCCCCchhHHHHh--cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEE--Eecch--HHHHhhcCCCc
Q 047214 101 LSEKLEVAGANIPHFTKERV--RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVV--TTRDK--RVLEKFRGEKK 172 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilv--ttR~~--~~~~~~~~~~~ 172 (658)
+.+.+ ....+.+ .++..++||||++... ..+.++..+. .+..+++ ||.++ .+.........
T Consensus 93 ir~~i--------~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~ 161 (725)
T PRK13341 93 LRAEV--------DRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSR 161 (725)
T ss_pred HHHHH--------HHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcccc
Confidence 11111 1111111 2356799999997654 4556655432 2443444 33443 23333334567
Q ss_pred eEEcCCCChHHHHHHHHHHhcCC-----CCCCchhHHHHHHHHHHcCCCcc
Q 047214 173 IYRVNGLEFEEAFEHFCNFAFEE-----NHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 173 ~~~l~~L~~~~~~~l~~~~~~~~-----~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
.+.+.+++.++...++.+.+... .....-.++..+.|++.+.|..-
T Consensus 162 v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 162 LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 89999999999999998766310 11122334567888888888654
No 81
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.54 E-value=1.1e-06 Score=84.79 Aligned_cols=175 Identities=14% Similarity=0.169 Sum_probs=100.1
Q ss_pred CCCCCcc-cccchH-hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhH
Q 047214 25 DSSNGLV-GLNSRI-EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILS 102 (658)
Q Consensus 25 ~~~~~~v-GR~~~~-~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 102 (658)
..-+.|+ |.+.+. ..+.++... . ...+.+.|+|.+|+|||+||..+++...+.-...+++. .....
T Consensus 15 ~~~d~f~~~~~~~~~~~l~~~~~~-~-~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~~~--------- 82 (227)
T PRK08903 15 PTFDNFVAGENAELVARLRELAAG-P-VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AASPL--------- 82 (227)
T ss_pred hhhcccccCCcHHHHHHHHHHHhc-c-CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHHhH---------
Confidence 3345555 554444 344444442 1 34567889999999999999999998543333344444 11110
Q ss_pred HHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh--hhhhhcccCCC-CCCC-EEEEEecchHHHH--------hhcCC
Q 047214 103 EKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ--LEGLIGELDQF-GPGS-RIVVTTRDKRVLE--------KFRGE 170 (658)
Q Consensus 103 ~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~l~~~l~~~-~~~~-~ilvttR~~~~~~--------~~~~~ 170 (658)
..+ .. ....-++|+||++.... .+.+...+... ..+. .+++|++..+... .+ ..
T Consensus 83 ~~~------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~-~~ 148 (227)
T PRK08903 83 LAF------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRL-GW 148 (227)
T ss_pred HHH------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHH-hc
Confidence 000 11 12345799999976542 22232322211 1233 4666666543211 22 23
Q ss_pred CceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhccc
Q 047214 171 KKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSL 227 (658)
Q Consensus 171 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l 227 (658)
...+.+.+++.++-.+++.+....... .-.++..+.+++.+.|++..+..+...+
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 478999999998877777765432222 2234567888889999998877666544
No 82
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.53 E-value=1.7e-06 Score=83.59 Aligned_cols=171 Identities=15% Similarity=0.167 Sum_probs=98.8
Q ss_pred CCcccccc-hHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhh
Q 047214 28 NGLVGLNS-RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLE 106 (658)
Q Consensus 28 ~~~vGR~~-~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 106 (658)
+.++|-.. .+..+.++... .+.+.+.|+|++|+|||+|+..+++...+....+.++. +..... .
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~---~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~~~-----~------ 87 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQ---EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKRAW-----F------ 87 (235)
T ss_pred ccccCccHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHHhh-----h------
Confidence 33446333 33444444433 33468899999999999999999998665444455554 221100 0
Q ss_pred hcCCCCchhHHHHhcCcceEEEEeCCCCc---hhhhhhh-cccCCC-CCC-CEEEEEecchH---------HHHhhcCCC
Q 047214 107 VAGANIPHFTKERVRRMKVLIVLDDVNEV---GQLEGLI-GELDQF-GPG-SRIVVTTRDKR---------VLEKFRGEK 171 (658)
Q Consensus 107 ~~~~~~~~~l~~~l~~~~~LlvlDdv~~~---~~~~~l~-~~l~~~-~~~-~~ilvttR~~~---------~~~~~~~~~ 171 (658)
...+.+.+.. --++++||+... ..|+..+ ..+... ..| .++|+||+.+. ..+.+ ...
T Consensus 88 ------~~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl-~~g 159 (235)
T PRK08084 88 ------VPEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRL-DWG 159 (235)
T ss_pred ------hHHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHH-hCC
Confidence 0111222221 247899999654 3444322 222111 123 47899988663 23333 455
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHh
Q 047214 172 KIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 172 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
.++.+.++++++-.+.+.+++..... .--++..+-|++.+.|..-.+..+
T Consensus 160 ~~~~l~~~~~~~~~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 160 QIYKLQPLSDEEKLQALQLRARLRGF--ELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred ceeeecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHHHHHH
Confidence 79999999999999988875533322 222446777788777766554444
No 83
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=1.2e-06 Score=84.39 Aligned_cols=168 Identities=13% Similarity=0.104 Sum_probs=98.4
Q ss_pred CCcccccch-HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhh
Q 047214 28 NGLVGLNSR-IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLE 106 (658)
Q Consensus 28 ~~~vGR~~~-~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 106 (658)
+.|++.... +..+..+... .....+.|+|.+|+|||+|+.++++...+....++++. ..+.. ..+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~---~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~~~-----~~~~---- 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAG---QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQAAA-----GRLR---- 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhc---cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHHhh-----hhHH----
Confidence 446655543 3333333322 23456999999999999999999998766555566665 21111 0011
Q ss_pred hcCCCCchhHHHHhcCcceEEEEeCCCCch---hhhh-hhcccCC-CCCCCEEEEEecchH---------HHHhhcCCCc
Q 047214 107 VAGANIPHFTKERVRRMKVLIVLDDVNEVG---QLEG-LIGELDQ-FGPGSRIVVTTRDKR---------VLEKFRGEKK 172 (658)
Q Consensus 107 ~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---~~~~-l~~~l~~-~~~~~~ilvttR~~~---------~~~~~~~~~~ 172 (658)
...+.+ ...-+||+||+.... .|.. +...+.. ...+..+|+|++... +.+.+ ....
T Consensus 86 --------~~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl-~~~~ 155 (233)
T PRK08727 86 --------DALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRL-AQCI 155 (233)
T ss_pred --------HHHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHH-hcCc
Confidence 111122 233589999997543 2322 2222211 124667999998653 22222 3357
Q ss_pred eEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 173 IYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 173 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
.+.+++++.++-.+++.+++..... .-.++....|++.+.|..-.+
T Consensus 156 ~~~l~~~~~e~~~~iL~~~a~~~~l--~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 156 RIGLPVLDDVARAAVLRERAQRRGL--ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred eEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHhCCCCHHHH
Confidence 8999999999999999986643322 222445677888777665444
No 84
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=9.7e-07 Score=94.31 Aligned_cols=176 Identities=13% Similarity=0.114 Sum_probs=110.0
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cccC--------------------
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEFE-------------------- 81 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~-------------------- 81 (658)
.|..-.+++|++..++.+.+++... .-.+.+.++|+.|+||||+|+.+++.+. ....
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~--rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~ 88 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNN--KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSV 88 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCC
Confidence 3456678999999999999988753 2346788999999999999999999842 1111
Q ss_pred ceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEE
Q 047214 82 GRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRI 154 (658)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~i 154 (658)
..+++... ....++.+. .+.+.+ ..++-++|+|+++... .+..++..+-.......+
T Consensus 89 DiieIdaa----s~igVd~IR------------eIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvf 152 (605)
T PRK05896 89 DIVELDAA----SNNGVDEIR------------NIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVF 152 (605)
T ss_pred ceEEeccc----cccCHHHHH------------HHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEE
Confidence 01111100 000111111 111111 1334579999997753 466666665443345555
Q ss_pred EEEe-cchHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 155 VVTT-RDKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 155 lvtt-R~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
|++| ....+......++..+.+.+++.++....+...+...+.. -.++.+..+++.++|.+-
T Consensus 153 IL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR 215 (605)
T PRK05896 153 IFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLR 215 (605)
T ss_pred EEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHH
Confidence 5544 4334444444667899999999999999888866443221 223457889999999764
No 85
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.51 E-value=3.7e-06 Score=78.50 Aligned_cols=160 Identities=16% Similarity=0.186 Sum_probs=96.8
Q ss_pred hHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc---------------------cCceEEEeccccccccch
Q 047214 39 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---------------------FEGRCFLSDIRKNSETGG 97 (658)
Q Consensus 39 ~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~---------------------f~~~~~~~~~~~~~~~~~ 97 (658)
.+.+.+... .-...+.++|+.|+|||++|+.+++.+... +....++... .....
T Consensus 3 ~l~~~i~~~--~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~~ 77 (188)
T TIGR00678 3 QLKRALEKG--RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSIK 77 (188)
T ss_pred HHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcCC
Confidence 445555432 234678899999999999999999985321 1111111100 00011
Q ss_pred hhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHHhhcCCCceE
Q 047214 98 GKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLEKFRGEKKIY 174 (658)
Q Consensus 98 ~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~~~~~~~~~~ 174 (658)
.+.+.+++..... .-..+.+-++|+|+++... .++.++..+........+|++|++. .+..........+
T Consensus 78 ~~~i~~i~~~~~~-------~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~ 150 (188)
T TIGR00678 78 VDQVRELVEFLSR-------TPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVL 150 (188)
T ss_pred HHHHHHHHHHHcc-------CcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEe
Confidence 1222211110000 0012456789999997764 3666777665545566677777654 3333344566799
Q ss_pred EcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 175 RVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 175 ~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
.+.+++.++..+.+.+. + . .++.+..|++.++|.|.
T Consensus 151 ~~~~~~~~~~~~~l~~~--g--i----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ--G--I----SEEAAELLLALAGGSPG 186 (188)
T ss_pred eCCCCCHHHHHHHHHHc--C--C----CHHHHHHHHHHcCCCcc
Confidence 99999999999988776 1 1 13468899999999885
No 86
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.50 E-value=3.1e-08 Score=95.51 Aligned_cols=102 Identities=26% Similarity=0.350 Sum_probs=64.9
Q ss_pred ccCCccEEEcccccccc--c---cccccCCCCCCEEecCCCccch----hhhhhhcCCCCCcEEeccCCcCCccCC----
Q 047214 555 ISGKITRLYLGQSAIEE--V---PSSIECLTDLEVLDLRDCKRLK----RISTRFCKLRSLVDLFLHGCLNLQSLP---- 621 (658)
Q Consensus 555 ~~~~L~~L~l~~~~i~~--~---~~~~~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~l~---- 621 (658)
..++|+.+.+..|.|.. + -..+..+++|+.|+|..|.... .+...++.+++|++|+++.|. ++.=.
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~ 261 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAF 261 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHH
Confidence 34667777777776652 1 2236778888888888875332 334456677888888888876 22111
Q ss_pred ------CCCCcccEEeccCCccccc------cC-CCCCCccEEeccCCCC
Q 047214 622 ------ALPLCLKSLDLRDCKMLQS------LP-ELPSCLEALDLTSCNM 658 (658)
Q Consensus 622 ------~l~~~L~~L~l~~~~~l~~------i~-~~~~~L~~L~l~~~~~ 658 (658)
..|+ |+.|.+.+|..-.. .+ ...+.|+.|+|++|.+
T Consensus 262 ~~al~~~~p~-L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPS-LEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCC-CceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4677 88888888863211 01 1356788888888864
No 87
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.50 E-value=6.9e-07 Score=92.62 Aligned_cols=180 Identities=17% Similarity=0.266 Sum_probs=103.5
Q ss_pred CCCCCCCcccccchHhhHHHHhcccC---------C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDL---------S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKN 92 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~---------~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 92 (658)
|...-..+.|+++.++++.+.+.... + ..++-+.|+|++|+|||++|+++++.....|-.+. ..
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~-----~~- 190 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-----GS- 190 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc-----hH-
Confidence 44445678999999999998775210 0 22456889999999999999999998665442111 00
Q ss_pred cccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----------------hhhhhhcccCC--CCCCCEE
Q 047214 93 SETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----------------QLEGLIGELDQ--FGPGSRI 154 (658)
Q Consensus 93 ~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~l~~--~~~~~~i 154 (658)
+......+.........+...-...+.+|++|+++... .+..++..+.. ...+.+|
T Consensus 191 ------~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~v 264 (364)
T TIGR01242 191 ------ELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKV 264 (364)
T ss_pred ------HHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 11111111100000111111223457899999986531 12223322221 1246678
Q ss_pred EEEecchHHH-Hhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 155 VVTTRDKRVL-EKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 155 lvttR~~~~~-~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
|.||+..... .... .....+.+...+.++..++|..+..+.....+ . ....+++.+.|..
T Consensus 265 I~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~-~--~~~~la~~t~g~s 328 (364)
T TIGR01242 265 IAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED-V--DLEAIAKMTEGAS 328 (364)
T ss_pred EEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc-C--CHHHHHHHcCCCC
Confidence 8888765321 2221 23468899999999999999887644322211 1 2467788887754
No 88
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.6e-06 Score=92.82 Aligned_cols=182 Identities=14% Similarity=0.108 Sum_probs=111.8
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cc--------------------cC
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SE--------------------FE 81 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~--------------------f~ 81 (658)
.|..=.++||.+..++.|.+++... .-.....++|+.|+||||+|+.+++.+- .. +.
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~--~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~ 88 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQ--YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFP 88 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC--CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCc
Confidence 3455678999999999999999763 2245678999999999999999999842 11 11
Q ss_pred ceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEec
Q 047214 82 GRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTR 159 (658)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR 159 (658)
.++.+... ....++.+.+++.... ..-..++.-++|+|+++... ..+.++..+-......++|++|.
T Consensus 89 d~~eidaa----s~~~v~~iR~l~~~~~-------~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 89 DLFEVDAA----SRTKVEDTRELLDNIP-------YAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred eEEEEccc----ccCCHHHHHHHHHHHh-------hccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 11111100 0011111121111000 00112456799999998764 46666666654445666666654
Q ss_pred ch-HHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcch
Q 047214 160 DK-RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLV 219 (658)
Q Consensus 160 ~~-~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 219 (658)
+. .+.......+..+.+.+++.++..+.+.+.+...+... .++.+..|++.++|.+--
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~ 216 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRD 216 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHH
Confidence 43 33333335668889999999998888777664433222 234577889999987753
No 89
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=4.7e-06 Score=89.99 Aligned_cols=179 Identities=15% Similarity=0.143 Sum_probs=112.7
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-c-c---CceEE------------
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-E-F---EGRCF------------ 85 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~-f---~~~~~------------ 85 (658)
.|..=.+++|.+..++.|.+++... .-.....++|+.|+||||+|+.+++.+.- + . .+...
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~--r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~ 85 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAG--RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPG 85 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCC
Confidence 4556678999999999999999763 23445789999999999999999988431 1 0 11000
Q ss_pred ---EeccccccccchhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEE
Q 047214 86 ---LSDIRKNSETGGGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIV 155 (658)
Q Consensus 86 ---~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~il 155 (658)
+..+.. .....++.+ +.+.+.+ .++.-++|+|+++... ..+.|+..+-.......+|
T Consensus 86 ~~dvieida-as~~gvd~i------------Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fI 152 (584)
T PRK14952 86 SIDVVELDA-ASHGGVDDT------------RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFI 152 (584)
T ss_pred CceEEEecc-ccccCHHHH------------HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEE
Confidence 000000 000111111 2222221 2456799999998765 4666766665544555555
Q ss_pred EEe-cchHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 156 VTT-RDKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 156 vtt-R~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
++| ....+.......+..+.+.+++.++..+.+.+.+...+.. ..++.+..|++.++|.+-
T Consensus 153 L~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~--i~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 153 FATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV--VDDAVYPLVIRAGGGSPR 214 (584)
T ss_pred EEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 554 4444555544667899999999999998888766443322 223456888899999774
No 90
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=1.5e-06 Score=93.68 Aligned_cols=185 Identities=17% Similarity=0.164 Sum_probs=112.8
Q ss_pred CCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc---------------------cCc
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---------------------FEG 82 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~---------------------f~~ 82 (658)
|..-.+++|.+..++.+.+++... .-...+.++|+.|+||||+|+.+++.+.-. |..
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~--~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d 89 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ--RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVD 89 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC--CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCc
Confidence 345578999999999999999863 223567899999999999999999884211 111
Q ss_pred eEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh--hhhhhcccCCCCCCCEEEEEecc
Q 047214 83 RCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ--LEGLIGELDQFGPGSRIVVTTRD 160 (658)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~ilvttR~ 160 (658)
.+++.. .....++.+.+++.... ..-..+++-++|+|+++.... ...++..+-.......+|++|.+
T Consensus 90 ~~ei~~----~~~~~vd~ir~l~~~~~-------~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d 158 (527)
T PRK14969 90 LIEVDA----ASNTQVDAMRELLDNAQ-------YAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTD 158 (527)
T ss_pred eeEeec----cccCCHHHHHHHHHHHh-------hCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCC
Confidence 111110 00011111222111000 000124567999999987753 66677666554455666665544
Q ss_pred h-HHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc-hhHHh
Q 047214 161 K-RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL-VPKVL 223 (658)
Q Consensus 161 ~-~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 223 (658)
+ .+.......+..+.+.+++.++..+.+.+.+..++. ...++.+..|++.++|.+- |+..+
T Consensus 159 ~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi--~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 159 PQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI--PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred hhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3 222222245678999999999999888877643332 2234457889999999775 43333
No 91
>PRK05642 DNA replication initiation factor; Validated
Probab=98.46 E-value=2.6e-06 Score=82.14 Aligned_cols=151 Identities=15% Similarity=0.243 Sum_probs=91.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeC
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDD 131 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDd 131 (658)
.+.+.|+|.+|+|||.|+..+++.+.+....++|+. ..+... . ...+.+.+++-. +||+||
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~~--------~---------~~~~~~~~~~~d-~LiiDD 105 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELLD--------R---------GPELLDNLEQYE-LVCLDD 105 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHHh--------h---------hHHHHHhhhhCC-EEEEec
Confidence 467899999999999999999988655445566665 221110 0 122333344333 678899
Q ss_pred CCCc---hhhhh-hhcccCCC-CCCCEEEEEecchH---------HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCC
Q 047214 132 VNEV---GQLEG-LIGELDQF-GPGSRIVVTTRDKR---------VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENH 197 (658)
Q Consensus 132 v~~~---~~~~~-l~~~l~~~-~~~~~ilvttR~~~---------~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~ 197 (658)
+... ..|+. +...+... ..|..+|+|++..+ +.+.+ ..+.++.+.++++++-.+.+.+++.....
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl-~~gl~~~l~~~~~e~~~~il~~ka~~~~~ 184 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRL-TLALVFQMRGLSDEDKLRALQLRASRRGL 184 (234)
T ss_pred hhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHH-hcCeeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 9643 24443 33333221 34677888887543 22222 34578899999999999998865533222
Q ss_pred CCchhHHHHHHHHHHcCCCcchhHHhh
Q 047214 198 CPEDLNWHSQRVVEYADGNPLVPKVLG 224 (658)
Q Consensus 198 ~~~~~~~~~~~i~~~~~g~Plai~~~a 224 (658)
.-.+++.+-|++.+.|..-.+..+-
T Consensus 185 --~l~~ev~~~L~~~~~~d~r~l~~~l 209 (234)
T PRK05642 185 --HLTDEVGHFILTRGTRSMSALFDLL 209 (234)
T ss_pred --CCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 1224566777777777665544443
No 92
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.45 E-value=2.5e-06 Score=96.30 Aligned_cols=152 Identities=14% Similarity=0.189 Sum_probs=89.3
Q ss_pred CCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc-c-----CceEEEeccccccccchhh
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-F-----EGRCFLSDIRKNSETGGGK 99 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f-----~~~~~~~~~~~~~~~~~~~ 99 (658)
.-+.++||++++..+.+.|.. .....+.++|++|+|||++|+.+++++.+. . ...+|...........
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~---~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~--- 253 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCR---RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGT--- 253 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhc---CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhc---
Confidence 446799999999999998875 334457799999999999999999985432 1 2334433111110000
Q ss_pred HhHHHhhhcCCCCchhHHHHh----cCcceEEEEeCCCCch----------hhhh-hhcccCCCCCCCEEEEEecchH--
Q 047214 100 ILSEKLEVAGANIPHFTKERV----RRMKVLIVLDDVNEVG----------QLEG-LIGELDQFGPGSRIVVTTRDKR-- 162 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~~----------~~~~-l~~~l~~~~~~~~ilvttR~~~-- 162 (658)
... .+..+.+++.+ +..+.+|++|+++... +... +.+.+. ....++|-+|...+
T Consensus 254 ---~~~----g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~~ 324 (731)
T TIGR02639 254 ---KYR----GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEYK 324 (731)
T ss_pred ---ccc----chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHHH
Confidence 000 01112222222 3457899999986431 1222 333222 12234555554322
Q ss_pred ----HHHhhcCCCceEEcCCCChHHHHHHHHHHh
Q 047214 163 ----VLEKFRGEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 163 ----~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
...........+.++.++.++..++++...
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 122233456789999999999999998654
No 93
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=3.1e-06 Score=95.07 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=114.1
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cc-c---Cc---------------
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SE-F---EG--------------- 82 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~-f---~~--------------- 82 (658)
.|..-.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+++.+. .. . .|
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~--ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~ 87 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSG--RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPG 87 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCC
Confidence 4556678999999999999999863 2235678999999999999999999842 11 0 11
Q ss_pred ---eEEEeccccccccchhhHhHHHhhhcCCCCchhHHHH-----hcCcceEEEEeCCCCch--hhhhhhcccCCCCCCC
Q 047214 83 ---RCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKER-----VRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGS 152 (658)
Q Consensus 83 ---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~ 152 (658)
++++. . .....++.+ +.+.+. ..++.-++|||+++... ..+.|+..+.+-...+
T Consensus 88 ~~dv~eid---a-as~~~Vd~i------------R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~ 151 (824)
T PRK07764 88 SLDVTEID---A-ASHGGVDDA------------RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHL 151 (824)
T ss_pred CCcEEEec---c-cccCCHHHH------------HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCe
Confidence 11110 0 000011111 222222 33556789999998775 3666777666545566
Q ss_pred EEEEEec-chHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 153 RIVVTTR-DKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 153 ~ilvttR-~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
.+|++|. ...+.......+..|.+..++.++..+.+.+.+..+... ...+.+..|++.++|.+.
T Consensus 152 ~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 152 KFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred EEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 6665554 344555555678899999999999998888766433322 223456788999999874
No 94
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.44 E-value=2.3e-06 Score=81.46 Aligned_cols=180 Identities=14% Similarity=0.136 Sum_probs=97.6
Q ss_pred Ccccccch-HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccC--ceEEEeccccccccchhhHhHHHh
Q 047214 29 GLVGLNSR-IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE--GRCFLSDIRKNSETGGGKILSEKL 105 (658)
Q Consensus 29 ~~vGR~~~-~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~l 105 (658)
.++|...+ .-...+.+.+..+.....+.|+|..|+|||.|..++++.+.+..+ .++++. ..+.. ..+.+.+
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-~~~f~-----~~~~~~~ 83 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-AEEFI-----REFADAL 83 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-HHHHH-----HHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-HHHHH-----HHHHHHH
Confidence 34565333 334444444433234556889999999999999999998654322 344443 11111 1122222
Q ss_pred hhcCCCCchhHHHHhcCcceEEEEeCCCCchh---hhh-hhcccCC-CCCCCEEEEEecchH---------HHHhhcCCC
Q 047214 106 EVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ---LEG-LIGELDQ-FGPGSRIVVTTRDKR---------VLEKFRGEK 171 (658)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~---~~~-l~~~l~~-~~~~~~ilvttR~~~---------~~~~~~~~~ 171 (658)
.. .....+.+.++ .-=+|++||++.... |+. +...+.. ...|.++|+|++..+ ..+.+ ..+
T Consensus 84 ~~---~~~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl-~~G 158 (219)
T PF00308_consen 84 RD---GEIEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRL-SWG 158 (219)
T ss_dssp HT---TSHHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHH-HCS
T ss_pred Hc---ccchhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhH-hhc
Confidence 21 22455666665 345788999976542 322 2221111 135778999996553 33333 456
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 172 KIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 172 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
-++.+.+.++++..+++.+.+...... --+++++-|++.+.+..-.+.
T Consensus 159 l~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 159 LVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp EEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHH
T ss_pred chhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHH
Confidence 689999999999999998877443322 224456667776666554443
No 95
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=7.3e-09 Score=97.34 Aligned_cols=170 Identities=25% Similarity=0.289 Sum_probs=90.2
Q ss_pred CCccEEEecCCCcc--cccccccCCCCccEEeccCCCcccccCCCcCCCccEEEeecCCcccccccccCCCCCCEEeccC
Q 047214 445 ENLVELNLHFSKVE--QLWEGKKEAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEG 522 (658)
Q Consensus 445 ~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 522 (658)
..|++|||++..|+ .+-.-++.+.+|+.|.+.+++.-..+. ..+.+-.+|+.|++++
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~---------------------~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV---------------------NTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH---------------------HHHhccccceeecccc
Confidence 34788888877765 222224445555555555554322222 2333344455555555
Q ss_pred CCCCCcCCCCC---CCCCCcEEeccCCCCccc-----cCcccCCccEEEccccc----cccccccccCCCCCCEEecCCC
Q 047214 523 CKSLRSFPSNF---RFVCPVTINFSSCVNLIE-----FPQISGKITRLYLGQSA----IEEVPSSIECLTDLEVLDLRDC 590 (658)
Q Consensus 523 ~~~l~~~~~~~---~~~~L~~L~l~~~~~l~~-----~~~~~~~L~~L~l~~~~----i~~~~~~~~~l~~L~~L~l~~~ 590 (658)
|..+++..... +++.|..|++++|..... ......+|+.|+++++. .+.+..-...+|+|..|+++.|
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 44443322211 345555555555533221 12234556666665432 1122222456788888888877
Q ss_pred ccch-hhhhhhcCCCCCcEEeccCCcCCc-----cCCCCCCcccEEeccCCc
Q 047214 591 KRLK-RISTRFCKLRSLVDLFLHGCLNLQ-----SLPALPLCLKSLDLRDCK 636 (658)
Q Consensus 591 ~~~~-~~~~~~~~l~~L~~L~l~~~~~l~-----~l~~l~~~L~~L~l~~~~ 636 (658)
..+. .....+..|+.|++|.++.|-.+- .+..+|+ |.+|++.+|-
T Consensus 324 v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~ps-l~yLdv~g~v 374 (419)
T KOG2120|consen 324 VMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPS-LVYLDVFGCV 374 (419)
T ss_pred cccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcc-eEEEEecccc
Confidence 6553 233446677888888888775432 2226777 8888888764
No 96
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.44 E-value=3.9e-06 Score=95.45 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=101.2
Q ss_pred CCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc------cCceEEEeccccccccchh
Q 047214 25 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE------FEGRCFLSDIRKNSETGGG 98 (658)
Q Consensus 25 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~ 98 (658)
-.-+.++||+.++..+...|.. .....+.++|++|+||||+|+.+++++... ....+|..++.........
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r---~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~ 260 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLR---RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV 260 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhc---CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc
Confidence 3457899999999999998875 334456799999999999999999985432 1233333322221100000
Q ss_pred -hHhHHHhhhcCCCCchhHHHHh-cCcceEEEEeCCCCch---------hhhhhhcccCCCCCCCEEEEEecchHH----
Q 047214 99 -KILSEKLEVAGANIPHFTKERV-RRMKVLIVLDDVNEVG---------QLEGLIGELDQFGPGSRIVVTTRDKRV---- 163 (658)
Q Consensus 99 -~~l~~~l~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~---------~~~~l~~~l~~~~~~~~ilvttR~~~~---- 163 (658)
..+...+ .+.+.+.- .+.+.+|++|+++... +...++.+... ....++|-+|...+.
T Consensus 261 ~ge~e~~l-------k~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~-~G~l~~IgaTT~~e~~~~~ 332 (852)
T TIGR03345 261 KGEFENRL-------KSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA-RGELRTIAATTWAEYKKYF 332 (852)
T ss_pred chHHHHHH-------HHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh-CCCeEEEEecCHHHHhhhh
Confidence 0000000 11111111 1468999999986542 11112222221 123456666554322
Q ss_pred --HHhhcCCCceEEcCCCChHHHHHHHHHHhcC--CCCCCchhHHHHHHHHHHcCCCc
Q 047214 164 --LEKFRGEKKIYRVNGLEFEEAFEHFCNFAFE--ENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 164 --~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
...+......+.+++++.+++.+++...... ......-.++....+++.+.+..
T Consensus 333 ~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 333 EKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred hccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 2223356679999999999999997543311 11111223445666777776544
No 97
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=1.2e-07 Score=89.31 Aligned_cols=178 Identities=17% Similarity=0.183 Sum_probs=106.1
Q ss_pred CCCCccEEEecCCCcc---cccccccCCCCccEEeccCCCcccccC-C-CcCCCccEEEeecCCc--ccccccccCCCCC
Q 047214 443 KPENLVELNLHFSKVE---QLWEGKKEAFKLKSINLSHCRHFIDMS-Y-PSAPNLETYLLDYTNF--ACVPSSIQNFKYL 515 (658)
Q Consensus 443 ~l~~L~~L~L~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~~~~-l-~~l~~L~~L~l~~~~~--~~~~~~~~~l~~L 515 (658)
.+.+++.|||.+|.|+ ++..-+.+|++|++|+++.|..-..+. + ....+|++|-+.++.+ .+....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4556666666666655 233334566677777776665333333 2 3455677777766555 2334456677777
Q ss_pred CEEeccCCCCCCc--CCCCC--C-CCCCcEEeccCCCC-----ccccCcccCCccEEEccccccccccc--cccCCCCCC
Q 047214 516 SALSFEGCKSLRS--FPSNF--R-FVCPVTINFSSCVN-----LIEFPQISGKITRLYLGQSAIEEVPS--SIECLTDLE 583 (658)
Q Consensus 516 ~~L~l~~~~~l~~--~~~~~--~-~~~L~~L~l~~~~~-----l~~~~~~~~~L~~L~l~~~~i~~~~~--~~~~l~~L~ 583 (658)
+.|+++.|. +.. +.+.+ . -+.+..|++.+|.. .-.+...++++..+.+..|.++.... +...+|.+.
T Consensus 149 telHmS~N~-~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 149 TELHMSDNS-LRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhccch-hhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 777777652 111 11111 1 12455556655532 12344567788888888887775543 356677788
Q ss_pred EEecCCCccc-hhhhhhhcCCCCCcEEeccCCcCCccCC
Q 047214 584 VLDLRDCKRL-KRISTRFCKLRSLVDLFLHGCLNLQSLP 621 (658)
Q Consensus 584 ~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 621 (658)
.|+++.+... ..-.+++.+|++|..|.++++|....+.
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 8888876533 2334568888999999998888665554
No 98
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=4.2e-06 Score=87.06 Aligned_cols=182 Identities=13% Similarity=0.193 Sum_probs=109.6
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc--------cCceEEEeccccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE--------FEGRCFLSDIRKNSE 94 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~~ 94 (658)
.|..-.+++|.+..++.+.+++... .-.+.+.++|++|+|||++|..+++.+... |...+.- +.. ..
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~--~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~-~~ 86 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENN--HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDA-AS 86 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecc-cc
Confidence 3456678999999999999999753 234688899999999999999998875321 2111110 111 01
Q ss_pred cchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEe-cchHHHHhhcCCC
Q 047214 95 TGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTT-RDKRVLEKFRGEK 171 (658)
Q Consensus 95 ~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvtt-R~~~~~~~~~~~~ 171 (658)
....+.+.+++.... ..-..+++-++|+|+++... .++.++..+........+|+++ +...+.......+
T Consensus 87 ~~~~~~i~~l~~~~~-------~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~ 159 (367)
T PRK14970 87 NNSVDDIRNLIDQVR-------IPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRC 159 (367)
T ss_pred CCCHHHHHHHHHHHh-------hccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcc
Confidence 111112222111000 00012345689999997654 3666665554333345555554 3333333333556
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 172 KIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 172 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
..+++.+++.++....+...+...+.. -.++.++.+++.++|.+-
T Consensus 160 ~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 160 QIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALR 204 (367)
T ss_pred eeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHH
Confidence 789999999999998888766443321 224567888888888765
No 99
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.43 E-value=1.9e-06 Score=79.55 Aligned_cols=178 Identities=20% Similarity=0.203 Sum_probs=97.2
Q ss_pred CCCCCCCcccccchHhhHHHHhcc--cCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCM--DLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~--~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
.|..-++|||.+..++.+.-++.. ..++....+.+||++|+||||||.-+++.....|. +.+ ... ......
T Consensus 19 RP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g~~---i~k~~d 91 (233)
T PF05496_consen 19 RPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-GPA---IEKAGD 91 (233)
T ss_dssp S-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-CCC-----SCHH
T ss_pred CCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-chh---hhhHHH
Confidence 456778999999999887766653 12245678999999999999999999999776653 222 100 000011
Q ss_pred hHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhccc--------CCCCCCC-----------EEEEEec
Q 047214 101 LSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGEL--------DQFGPGS-----------RIVVTTR 159 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l--------~~~~~~~-----------~ilvttR 159 (658)
+..+ ...++ ++.+|++|+++... .-+.+++.. ...+++. -|=.|||
T Consensus 92 l~~i------------l~~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr 158 (233)
T PF05496_consen 92 LAAI------------LTNLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTR 158 (233)
T ss_dssp HHHH------------HHT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESS
T ss_pred HHHH------------HHhcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecc
Confidence 1111 11222 45688889998754 222232221 1112222 2345788
Q ss_pred chHHHHhhcCCCc-eEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHH
Q 047214 160 DKRVLEKFRGEKK-IYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKV 222 (658)
Q Consensus 160 ~~~~~~~~~~~~~-~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 222 (658)
...+...+..... ..+++..+.+|-.+.+.+.+..-. .+-.++.+.+|++.+.|-|-...-
T Consensus 159 ~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~--i~i~~~~~~~Ia~rsrGtPRiAnr 220 (233)
T PF05496_consen 159 AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN--IEIDEDAAEEIARRSRGTPRIANR 220 (233)
T ss_dssp GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHH
T ss_pred ccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHhcCCChHHHHH
Confidence 7655555533333 458999999999998877653322 234456789999999999964433
No 100
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.42 E-value=5.4e-07 Score=91.40 Aligned_cols=155 Identities=22% Similarity=0.339 Sum_probs=106.6
Q ss_pred CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEcc
Q 047214 486 YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLG 565 (658)
Q Consensus 486 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~ 565 (658)
+..+.++..|+++++.+..+|. -.++|+.|.+++|..++.+|... .++|++|.+++|..+..+| .+|+.|++.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~ 120 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP---ESVRSLEIK 120 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc---cccceEEeC
Confidence 4557889999999998888872 23479999999999998888654 4689999999997776665 567788887
Q ss_pred ccccc---cccccccCCCCCCEEecCCCccc--hhhhhhhcCCCCCcEEeccCCcCCccCCCCCCcccEEeccCCccc-c
Q 047214 566 QSAIE---EVPSSIECLTDLEVLDLRDCKRL--KRISTRFCKLRSLVDLFLHGCLNLQSLPALPLCLKSLDLRDCKML-Q 639 (658)
Q Consensus 566 ~~~i~---~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~l~~l~~l~~~L~~L~l~~~~~l-~ 639 (658)
++... .+|. +|+.|.+.++... ..+|. .-.++|+.|.+++|..+...+.+|.+|+.|+++.+... .
T Consensus 121 ~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~sL 192 (426)
T PRK15386 121 GSATDSIKNVPN------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKTTW 192 (426)
T ss_pred CCCCcccccCcc------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCcccccccCcEEEecccccccc
Confidence 66543 4444 5667777543311 11111 11368999999999866433368888999999876311 1
Q ss_pred ccC--CCCCCccEEeccCC
Q 047214 640 SLP--ELPSCLEALDLTSC 656 (658)
Q Consensus 640 ~i~--~~~~~L~~L~l~~~ 656 (658)
.++ ..++++ .|++.+|
T Consensus 193 eI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 193 NISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred cCccccccccc-Eechhhh
Confidence 222 244566 7777665
No 101
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.41 E-value=1.4e-06 Score=82.92 Aligned_cols=183 Identities=16% Similarity=0.202 Sum_probs=118.7
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh--ccccCceEEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF--SSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~--~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
.|..-.+++|.+..+..+.+.+.. ...++...||++|.|||+-|..++++. .+.|.+.+.-...++. .+..+
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde---rGisv 104 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE---RGISV 104 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc---ccccc
Confidence 566778899999999999998876 356788899999999999999999983 3556666543222221 11111
Q ss_pred hHHHhhhcCCCCchhHHHHh---cC---c-ceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecchH-HHHhhcCC
Q 047214 101 LSEKLEVAGANIPHFTKERV---RR---M-KVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDKR-VLEKFRGE 170 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l---~~---~-~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~~~~ 170 (658)
..+... ....+.... .+ . --++|||+++... .|..+...........+.++.+.... +..-....
T Consensus 105 vr~Kik-----~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 105 VREKIK-----NFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred hhhhhc-----CHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 111110 011111111 11 1 2689999998865 58888777766556666655554432 22222245
Q ss_pred CceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 171 KKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 171 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
+..+...+|.+++...-++..+..++.+-+ .+..+.|++.++|---
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDLR 225 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcHH
Confidence 678999999999999888887765554333 4467889999988543
No 102
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.41 E-value=4.1e-08 Score=103.79 Aligned_cols=191 Identities=23% Similarity=0.292 Sum_probs=120.5
Q ss_pred CCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC-CCCCCCccEEEecCCCcccccc
Q 047214 384 NMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS-NFKPENLVELNLHFSKVEQLWE 462 (658)
Q Consensus 384 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~-~~~l~~L~~L~L~~~~i~~l~~ 462 (658)
.+..+..+.+..|.+ ...-..+..+. +|..|++.+|.|+.+.. ...+.+|++|+|++|.|..+.
T Consensus 70 ~l~~l~~l~l~~n~i-------------~~~~~~l~~~~-~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~- 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLI-------------AKILNHLSKLK-SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE- 134 (414)
T ss_pred HhHhHHhhccchhhh-------------hhhhccccccc-ceeeeeccccchhhcccchhhhhcchheecccccccccc-
Confidence 456666666776665 22223355555 78888888888888877 447888888888888887763
Q ss_pred cccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCccccccc-ccCCCCCCEEeccCCCCCCcCCCCCCCCCCcE
Q 047214 463 GKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVPSS-IQNFKYLSALSFEGCKSLRSFPSNFRFVCPVT 540 (658)
Q Consensus 463 ~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 540 (658)
.+..+..|+.|++++| .+..++ +..+++|+.+++.+|.+..+... ...+.+|+.+.+.+| .+..+.....+..+..
T Consensus 135 ~l~~l~~L~~L~l~~N-~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~~~~~~~l~~ 212 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGN-LISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN-SIREIEGLDLLKKLVL 212 (414)
T ss_pred chhhccchhhheeccC-cchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC-chhcccchHHHHHHHH
Confidence 3566667888888888 566666 77788888888888777776543 467777888888776 3333333222233333
Q ss_pred EeccCCC--CccccCcccC-CccEEEccccccccccccccCCCCCCEEecCCCc
Q 047214 541 INFSSCV--NLIEFPQISG-KITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCK 591 (658)
Q Consensus 541 L~l~~~~--~l~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~ 591 (658)
+++..+. .+..++.... .|+.+++..|.+..++..+..+..+..|++..+.
T Consensus 213 ~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 213 LSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred hhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 3333321 1111111100 2667777777777765556677777777777654
No 103
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.39 E-value=7e-06 Score=89.16 Aligned_cols=194 Identities=15% Similarity=0.157 Sum_probs=115.3
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccC-c---eEEEeccccc------
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE-G---RCFLSDIRKN------ 92 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~-~---~~~~~~~~~~------ 92 (658)
.|..-.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+++.+.-... . ..+-. +..+
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~g--ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~-cg~c~~C~~i 95 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETG--RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL-CGVGEHCQAI 95 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc-CcccHHHHHH
Confidence 4556788999999999999999763 23457889999999999999999998432110 0 00000 0000
Q ss_pred cccchhhHhH-HHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEe-cchHH
Q 047214 93 SETGGGKILS-EKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTT-RDKRV 163 (658)
Q Consensus 93 ~~~~~~~~l~-~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvtt-R~~~~ 163 (658)
......+.+. ..-...+.+..+.+.+.+ ..++-++|+|+++... ..+.|+..+-.-...+.+|++| ....+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kl 175 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKV 175 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhh
Confidence 0000000000 000000000011222222 2346689999997765 3666666655444566666555 43444
Q ss_pred HHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 164 LEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 164 ~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
.......+..+.+.+++.++....+.+.+...... -.++.++.|++.++|.+.-+.
T Consensus 176 l~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al 231 (598)
T PRK09111 176 PVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGL 231 (598)
T ss_pred hHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 44444567899999999999999998876443322 223567889999999886443
No 104
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.38 E-value=4.3e-08 Score=103.60 Aligned_cols=217 Identities=22% Similarity=0.172 Sum_probs=139.5
Q ss_pred hhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccc
Q 047214 380 GAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQ 459 (658)
Q Consensus 380 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~ 459 (658)
..+..+++|..|++.+|.|.. +...+..++ +|++|++++|.|..+.+.-.+..|+.|++++|.|..
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~-------------i~~~l~~~~-~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEK-------------IENLLSSLV-NLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISD 154 (414)
T ss_pred cccccccceeeeeccccchhh-------------cccchhhhh-cchheeccccccccccchhhccchhhheeccCcchh
Confidence 346778888999999998733 333366677 899999999999888887778889999999998887
Q ss_pred ccccccCCCCccEEeccCCCcccccCC---CcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCC
Q 047214 460 LWEGKKEAFKLKSINLSHCRHFIDMSY---PSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFV 536 (658)
Q Consensus 460 l~~~~~~l~~L~~L~l~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 536 (658)
+. .+..+..|+.+++++|. +..+.- ..+.+++.+++.+|.+..+. .+..+..+..+++.+| .+..+.....+.
T Consensus 155 ~~-~~~~l~~L~~l~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n-~i~~~~~l~~~~ 230 (414)
T KOG0531|consen 155 IS-GLESLKSLKLLDLSYNR-IVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDN-KISKLEGLNELV 230 (414)
T ss_pred cc-CCccchhhhcccCCcch-hhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccc-cceeccCcccch
Confidence 63 35558888889998884 444442 77888888888888776653 3444445555556554 333333323333
Q ss_pred C--CcEEeccCCCCcc--ccCcccCCccEEEccccccccccccccCCCCCCEEecCCCccchh--hhhh--hcCCCCCcE
Q 047214 537 C--PVTINFSSCVNLI--EFPQISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKR--ISTR--FCKLRSLVD 608 (658)
Q Consensus 537 ~--L~~L~l~~~~~l~--~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~--~~~l~~L~~ 608 (658)
. |+.+.++++..-. .....+.++..|++..+.+..+.. +...+.+..+....++.... .... ....+.+..
T Consensus 231 ~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (414)
T KOG0531|consen 231 MLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEG-LERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVT 309 (414)
T ss_pred hHHHHHHhcccCccccccccccccccccccchhhcccccccc-ccccchHHHhccCcchhcchhhhhccccccccccccc
Confidence 3 7777777764322 123345667788888777765433 34455555555555543211 1111 345667777
Q ss_pred EeccCCc
Q 047214 609 LFLHGCL 615 (658)
Q Consensus 609 L~l~~~~ 615 (658)
+.+.+++
T Consensus 310 ~~~~~~~ 316 (414)
T KOG0531|consen 310 LTLELNP 316 (414)
T ss_pred cccccCc
Confidence 7777665
No 105
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.38 E-value=2.5e-06 Score=88.76 Aligned_cols=179 Identities=16% Similarity=0.211 Sum_probs=100.5
Q ss_pred CCCCCCcccccchHhhHHHHhcccC---------C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDL---------S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS 93 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~---------~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 93 (658)
...-..+.|+++.++++.+.+...- + ..++-|.++|++|+|||++|+++++.....|- .+. ..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i---~v~-~~--- 199 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI---RVV-GS--- 199 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE---Eee-hH---
Confidence 3344568899999999998774210 0 33567889999999999999999998654321 111 11
Q ss_pred ccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch------------h-hhhhhccc---CC--CCCCCEEE
Q 047214 94 ETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG------------Q-LEGLIGEL---DQ--FGPGSRIV 155 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------------~-~~~l~~~l---~~--~~~~~~il 155 (658)
++.....+.........+...-...+.+|++|+++... . ...+...+ .. ...+..||
T Consensus 200 -----~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI 274 (389)
T PRK03992 200 -----ELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKII 274 (389)
T ss_pred -----HHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEE
Confidence 11111111000000111222223457899999997531 1 12222222 11 12355677
Q ss_pred EEecchHH-HHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 156 VTTRDKRV-LEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 156 vttR~~~~-~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
.||..... ...+. .....+.+.+.+.++-.++|..+..+...... . ....+++.+.|.-
T Consensus 275 ~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~-~--~~~~la~~t~g~s 337 (389)
T PRK03992 275 AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD-V--DLEELAELTEGAS 337 (389)
T ss_pred EecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc-C--CHHHHHHHcCCCC
Confidence 77766532 22221 23468999999999999999887644322211 1 1466777777744
No 106
>PRK09087 hypothetical protein; Validated
Probab=98.38 E-value=3.5e-06 Score=80.49 Aligned_cols=140 Identities=12% Similarity=0.110 Sum_probs=86.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLD 130 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlD 130 (658)
..+.+.|+|++|+|||+|++.++.... ..++. ... .. ......+.+ -+|++|
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~-~~~-~~-------------------~~~~~~~~~--~~l~iD 94 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH-PNE-IG-------------------SDAANAAAE--GPVLIE 94 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec-HHH-cc-------------------hHHHHhhhc--CeEEEE
Confidence 346789999999999999999887642 22333 110 00 001111111 378889
Q ss_pred CCCCch----hhhhhhcccCCCCCCCEEEEEecch---------HHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCC
Q 047214 131 DVNEVG----QLEGLIGELDQFGPGSRIVVTTRDK---------RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENH 197 (658)
Q Consensus 131 dv~~~~----~~~~l~~~l~~~~~~~~ilvttR~~---------~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~ 197 (658)
|+.... .+-++...+. ..|..+|+|++.. ...+.+ ....++++++++.++-.+++.+.+.....
T Consensus 95 Di~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl-~~gl~~~l~~pd~e~~~~iL~~~~~~~~~ 171 (226)
T PRK09087 95 DIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRL-KAATVVEIGEPDDALLSQVIFKLFADRQL 171 (226)
T ss_pred CCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHH-hCCceeecCCCCHHHHHHHHHHHHHHcCC
Confidence 996542 2222222222 3467788888743 233334 55689999999999999999988744322
Q ss_pred CCchhHHHHHHHHHHcCCCcchhHHh
Q 047214 198 CPEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 198 ~~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
.--+++.+-|++.+.|..-++..+
T Consensus 172 --~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 172 --YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred --CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 222446777888888777665543
No 107
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=9.9e-06 Score=88.17 Aligned_cols=191 Identities=13% Similarity=0.128 Sum_probs=111.4
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc--ccCceEEEec----cccc----
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS--EFEGRCFLSD----IRKN---- 92 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~--~f~~~~~~~~----~~~~---- 92 (658)
+|..-.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+++.+-- ..+...|... +..+
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~--ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~ 88 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMD--RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCR 88 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHH
Confidence 3456678999999999999988752 22355889999999999999999998421 1111111100 0000
Q ss_pred ----cccchhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEe-cc
Q 047214 93 ----SETGGGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTT-RD 160 (658)
Q Consensus 93 ----~~~~~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvtt-R~ 160 (658)
.....+..+.. -...+.+..+.+.+.+ .+.+-++|+|+++... ..+.|+..+-.-.....+|++| +.
T Consensus 89 ~~~~g~~~n~~~~d~-~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 89 DFDAGTSLNISEFDA-ASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHhccCCCCeEEecc-cccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 00000000000 0000000022222222 2445689999997765 3666766665434445555444 44
Q ss_pred hHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 161 KRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
..+.......+..+.+.+++.++....+.+.+...+. .-.++.++.|++.++|..-
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi--~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI--QIDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhCCCHH
Confidence 4555454467789999999999998888776543322 1224467889999999665
No 108
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=4.3e-06 Score=89.98 Aligned_cols=183 Identities=13% Similarity=0.103 Sum_probs=115.0
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-cc----C----------------
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-EF----E---------------- 81 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f----~---------------- 81 (658)
.|..-.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+++.+-. .. .
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~--ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hp 88 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQEN--RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHV 88 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCC
Confidence 3455678899998888889888752 22567889999999999999999998431 10 0
Q ss_pred ceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHH-----hcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEE
Q 047214 82 GRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKER-----VRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRI 154 (658)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~i 154 (658)
.++++... ....++. .+.+.+. ..+++-++|+|+++... ..+.|+..+..-.....+
T Consensus 89 Dv~eId~a----~~~~Id~------------iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~if 152 (624)
T PRK14959 89 DVVEIDGA----SNRGIDD------------AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTF 152 (624)
T ss_pred ceEEEecc----cccCHHH------------HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEE
Confidence 01111100 0001111 1222222 23456799999997764 466676665443345556
Q ss_pred EEEecc-hHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc-chhHHhhc
Q 047214 155 VVTTRD-KRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP-LVPKVLGS 225 (658)
Q Consensus 155 lvttR~-~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lai~~~a~ 225 (658)
|++|.+ ..+.......+..+.+.+++.++..+.+.+.+..... .-.++.++.|++.++|.+ .|+..+..
T Consensus 153 ILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi--~id~eal~lIA~~s~GdlR~Al~lLeq 223 (624)
T PRK14959 153 VLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV--DYDPAAVRLIARRAAGSVRDSMSLLGQ 223 (624)
T ss_pred EEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 665554 3444444355678999999999999988876644332 122446788999999965 46665543
No 109
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=7.3e-06 Score=86.65 Aligned_cols=177 Identities=15% Similarity=0.201 Sum_probs=110.2
Q ss_pred CCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc-c-----CceE-------------
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-F-----EGRC------------- 84 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f-----~~~~------------- 84 (658)
|..-.+++|.+..++.+.+++... .-...+.++|+.|+||||+|+.+++.+... . .+..
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~--~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~ 90 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN--RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSL 90 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC--CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCC
Confidence 456678999999999999999752 224678899999999999999999984321 0 0000
Q ss_pred -EEeccccccccchhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEE
Q 047214 85 -FLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVV 156 (658)
Q Consensus 85 -~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilv 156 (658)
|.. +... ....++.+.+ +.+.+ .+.+-++|+|+++... ..+.++..+........+|+
T Consensus 91 d~~~-i~g~-~~~gid~ir~------------i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 91 DVLE-IDGA-SHRGIEDIRQ------------INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred ceEE-eecc-ccCCHHHHHH------------HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEE
Confidence 000 0000 0011111111 11212 2557789999987654 35556665554344556666
Q ss_pred Eecc-hHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 157 TTRD-KRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 157 ttR~-~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
+|.+ ..+.......+..+.+.+++.++..+.+.+.+...+. +-.++.++.|++.++|.+-
T Consensus 157 ~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~--~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 157 ATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI--ETSREALLPIARAAQGSLR 217 (451)
T ss_pred EeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHH
Confidence 6543 3344444456789999999999999888876543322 1234467889999999764
No 110
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=8.6e-06 Score=89.03 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=111.7
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cccCceEEEeccccccc--cchhh
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEFEGRCFLSDIRKNSE--TGGGK 99 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~--~~~~~ 99 (658)
+|..-.+++|.+..++.+.+++... .-.....++|+.|+|||++|+.+++.+- .+... .+-. +..+.. ....+
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~--rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~-~~~p-C~~C~~~~~~~~D 88 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSN--KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD-LLEP-CQECIENVNNSLD 88 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC-CCCc-hhHHHHhhcCCCc
Confidence 4556678999999999999999763 2355678999999999999999998732 21100 0000 000000 00000
Q ss_pred HhH-HHhhhcCCCCchhHHHHhc-----CcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEE-EEecchHHHHhhcCC
Q 047214 100 ILS-EKLEVAGANIPHFTKERVR-----RMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIV-VTTRDKRVLEKFRGE 170 (658)
Q Consensus 100 ~l~-~~l~~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~il-vttR~~~~~~~~~~~ 170 (658)
.+. ...+..+.+..+.+.+.+. +++-++|+|+++... .+..++..+-.......+| +|++...+......+
T Consensus 89 vieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR 168 (725)
T PRK07133 89 IIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR 168 (725)
T ss_pred EEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh
Confidence 000 0000000000222223222 456799999997764 4667766654433444444 444444555444466
Q ss_pred CceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 171 KKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 171 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
+..+.+.+++.++..+.+...+...+.. ...+.+..|++.++|.+-
T Consensus 169 cq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR 214 (725)
T PRK07133 169 VQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLR 214 (725)
T ss_pred ceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHH
Confidence 7899999999999998888765433221 223457889999998764
No 111
>PTZ00202 tuzin; Provisional
Probab=98.33 E-value=1.6e-05 Score=80.44 Aligned_cols=164 Identities=17% Similarity=0.158 Sum_probs=92.5
Q ss_pred cCCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHh
Q 047214 22 VATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 22 ~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 101 (658)
.-|.....|+||+.++..+...|.....+.++++.|+|++|+|||||++.+..... ...++.... .....+..+
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr--g~eElLr~L 329 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR--GTEDTLRSV 329 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC--CHHHHHHHH
Confidence 45677889999999999999999753324567999999999999999999997654 223333233 111222333
Q ss_pred HHHhhhcCCCC----chhHHHHh-----c-CcceEEEEeCCCCchhhhhhhcc---cCCCCCCCEEEEEecchHH--HHh
Q 047214 102 SEKLEVAGANI----PHFTKERV-----R-RMKVLIVLDDVNEVGQLEGLIGE---LDQFGPGSRIVVTTRDKRV--LEK 166 (658)
Q Consensus 102 ~~~l~~~~~~~----~~~l~~~l-----~-~~~~LlvlDdv~~~~~~~~l~~~---l~~~~~~~~ilvttR~~~~--~~~ 166 (658)
...++...... .+.+.+.+ . +++.+||+- +.+.+.+..+... +.....-|.|++----+.+ ...
T Consensus 330 L~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~ 408 (550)
T PTZ00202 330 VKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANT 408 (550)
T ss_pred HHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcc
Confidence 33344322211 23333322 2 445555553 2222222222221 1112344555543322211 111
Q ss_pred hcCCCceEEcCCCChHHHHHHHHHHh
Q 047214 167 FRGEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 167 ~~~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
..+...-|.+.+|+.++|.++..+..
T Consensus 409 ~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 409 LLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cCccceeEecCCCCHHHHHHHHhhcc
Confidence 12445678899999999999876654
No 112
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.2e-05 Score=85.55 Aligned_cols=193 Identities=12% Similarity=0.091 Sum_probs=110.9
Q ss_pred CCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc----c-cCceEEEeccc-cccccch
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS----E-FEGRCFLSDIR-KNSETGG 97 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~----~-f~~~~~~~~~~-~~~~~~~ 97 (658)
|..-..++|.+..++.+.+++... .-.....++|+.|+||||+|+.++..+.. . .++....++.. .......
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~--~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d 89 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQ--RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPD 89 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCc
Confidence 445678999999999999999763 23456678999999999999999997431 0 01111000000 0000000
Q ss_pred hhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEe-cchHHHHhhcC
Q 047214 98 GKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTT-RDKRVLEKFRG 169 (658)
Q Consensus 98 ~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvtt-R~~~~~~~~~~ 169 (658)
+-.+ ......+.+..+.+.+.+ .+++-++|+|+++... ..+.++..+........+|++| +...+......
T Consensus 90 ~~ei-daas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~S 168 (486)
T PRK14953 90 LIEI-DAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILS 168 (486)
T ss_pred EEEE-eCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHH
Confidence 0000 000000000012233332 2456799999998664 3566666655434445555554 43344434335
Q ss_pred CCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 170 EKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 170 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
.+..+.+.+++.++..+.+...+...+. ...++.+..|++.++|.+..+.
T Consensus 169 Rc~~i~f~~ls~~el~~~L~~i~k~egi--~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 169 RCQRFIFSKPTKEQIKEYLKRICNEEKI--EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred hceEEEcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 5678999999999999888887643332 2223457888899999775443
No 113
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.31 E-value=1.1e-05 Score=82.36 Aligned_cols=150 Identities=16% Similarity=0.223 Sum_probs=92.3
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILS 102 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 102 (658)
.|..-.+++|.+...+.+.+++... .-+.++.++|++|+|||++|+.+++..... ...+. ... .. .+.+.
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~-~~~-~~---~~~i~ 85 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKG--RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN-GSD-CR---IDFVR 85 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec-cCc-cc---HHHHH
Confidence 5666788999999999999999753 345677789999999999999999876432 22233 111 11 22221
Q ss_pred HHhhhcCCCCchhHHHH--hcCcceEEEEeCCCCch--h-hhhhhcccCCCCCCCEEEEEecchH-HHHhhcCCCceEEc
Q 047214 103 EKLEVAGANIPHFTKER--VRRMKVLIVLDDVNEVG--Q-LEGLIGELDQFGPGSRIVVTTRDKR-VLEKFRGEKKIYRV 176 (658)
Q Consensus 103 ~~l~~~~~~~~~~l~~~--l~~~~~LlvlDdv~~~~--~-~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~~~~~~~~~l 176 (658)
+.+. .+... ....+-++|+|+++... . .+.+...+.....++++|+||.... +.....+.+..+.+
T Consensus 86 ~~l~--------~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~ 157 (316)
T PHA02544 86 NRLT--------RFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDF 157 (316)
T ss_pred HHHH--------HHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEe
Confidence 1111 00111 11346689999998662 2 2333333333346778888886543 22333345567888
Q ss_pred CCCChHHHHHHHHH
Q 047214 177 NGLEFEEAFEHFCN 190 (658)
Q Consensus 177 ~~L~~~~~~~l~~~ 190 (658)
...+.++..+++..
T Consensus 158 ~~p~~~~~~~il~~ 171 (316)
T PHA02544 158 GVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCCHHHHHHHHHH
Confidence 88888887766554
No 114
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.31 E-value=4.8e-06 Score=95.26 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=87.9
Q ss_pred CCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-cc-----CceEEEeccccccccchh-h
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-EF-----EGRCFLSDIRKNSETGGG-K 99 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f-----~~~~~~~~~~~~~~~~~~-~ 99 (658)
-+.++||+++++.+.++|... ..+.+.++|++|+|||++|..+++++.. .. ...+|..+.......... .
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~---~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~g 254 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRR---TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRG 254 (821)
T ss_pred CCCCCCcHHHHHHHHHHHccc---ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCcc
Confidence 356899999999999999753 3445679999999999999999998542 11 234443322111100000 0
Q ss_pred HhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch---------hhhhhhcccCCCCCCCEEEEEecchHHH------
Q 047214 100 ILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG---------QLEGLIGELDQFGPGSRIVVTTRDKRVL------ 164 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---------~~~~l~~~l~~~~~~~~ilvttR~~~~~------ 164 (658)
...+.+ ...+.+.-+.++.+|++|+++... +...++..... ....++|.+|...+..
T Consensus 255 e~e~rl-------~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg~l~~IgaTt~~ey~~~ie~D 326 (821)
T CHL00095 255 EFEERL-------KRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RGELQCIGATTLDEYRKHIEKD 326 (821)
T ss_pred HHHHHH-------HHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CCCcEEEEeCCHHHHHHHHhcC
Confidence 000000 112222223467999999995322 12223322221 1234556555544421
Q ss_pred HhhcCCCceEEcCCCChHHHHHHHHHH
Q 047214 165 EKFRGEKKIYRVNGLEFEEAFEHFCNF 191 (658)
Q Consensus 165 ~~~~~~~~~~~l~~L~~~~~~~l~~~~ 191 (658)
..+......+.+...+.++..++++..
T Consensus 327 ~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 327 PALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 222345678889999999988887643
No 115
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.29 E-value=1.6e-06 Score=75.64 Aligned_cols=107 Identities=21% Similarity=0.279 Sum_probs=63.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccc-----cCceEEEeccccccccchh-hHhHHHhhhcCCC--C----chhHHH
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSE-----FEGRCFLSDIRKNSETGGG-KILSEKLEVAGAN--I----PHFTKE 118 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~--~----~~~l~~ 118 (658)
+.+.+.|+|++|+|||+++.++++..... -..++|+. ++.......+ ..+.+.++..... . .+.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN-CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE-HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE-eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 46789999999999999999999986542 24455666 4443333333 4445545444333 1 345556
Q ss_pred HhcCcc-eEEEEeCCCCc-h--hhhhhhcccCCCCCCCEEEEEecc
Q 047214 119 RVRRMK-VLIVLDDVNEV-G--QLEGLIGELDQFGPGSRIVVTTRD 160 (658)
Q Consensus 119 ~l~~~~-~LlvlDdv~~~-~--~~~~l~~~l~~~~~~~~ilvttR~ 160 (658)
.+...+ .+||+|+++.. . .++.+..... ..+.++|+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 666554 59999999776 3 3444433323 667788887764
No 116
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=2.9e-05 Score=79.37 Aligned_cols=196 Identities=15% Similarity=0.181 Sum_probs=111.2
Q ss_pred CCCCcccccchHhhHHHHhccc-CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCc--eEEEeccccccccchhhHhH
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEG--RCFLSDIRKNSETGGGKILS 102 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~-~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 102 (658)
.++.+.+|+.++.++...|... .+..+..+.|+|.+|+|||+.++.+++++++.... ++++++....... +++.
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~---~i~~ 91 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY---QVLS 91 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH---HHHH
Confidence 4455999999999999988743 21334458999999999999999999997665332 4566533332222 3334
Q ss_pred HHhhhc---CC---CC---chhHHHHhc--CcceEEEEeCCCCchhh--hhhhcccCCCCC-CCEE--EEEecchHHHHh
Q 047214 103 EKLEVA---GA---NI---PHFTKERVR--RMKVLIVLDDVNEVGQL--EGLIGELDQFGP-GSRI--VVTTRDKRVLEK 166 (658)
Q Consensus 103 ~~l~~~---~~---~~---~~~l~~~l~--~~~~LlvlDdv~~~~~~--~~l~~~l~~~~~-~~~i--lvttR~~~~~~~ 166 (658)
.++... .. .. .+.+.+.+. ++.+++|||+++....- +-+...+..... ..+| |..+.+......
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHH
Confidence 333321 11 11 344455554 46899999999765432 222222211111 3444 344444432222
Q ss_pred hc------CCCceEEcCCCChHHHHHHHHHHhc---CCCCCCchhHHHHHHHHHHcCC-CcchhHHhh
Q 047214 167 FR------GEKKIYRVNGLEFEEAFEHFCNFAF---EENHCPEDLNWHSQRVVEYADG-NPLVPKVLG 224 (658)
Q Consensus 167 ~~------~~~~~~~l~~L~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~i~~~~~g-~Plai~~~a 224 (658)
+. -....+...|-+.+|-.+.+..++- ......+..-+.+..++...+| --.|+..+-
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 10 1223488999999999999988763 2233333333444555555554 334444443
No 117
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.28 E-value=8.5e-07 Score=65.51 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=36.8
Q ss_pred ccceEEecccCCCCCCCCC--CCCCccEEEecCCCccccccc-ccCCCCccEEeccCC
Q 047214 424 NLRYLHWDKYPLRTLPSNF--KPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHC 478 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~ 478 (658)
+|++|++++|+++.+|... .+++|++|++++|.+..+++. +..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 5666777777777666543 667777777777777666543 566677777777666
No 118
>PF14516 AAA_35: AAA-like domain
Probab=98.28 E-value=5.1e-05 Score=77.28 Aligned_cols=196 Identities=10% Similarity=0.150 Sum_probs=113.2
Q ss_pred CCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccc--cchh---
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSE--TGGG--- 98 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~--- 98 (658)
+.....+|+|...-+++.+.+.. ....+.|.|+-.+|||+|..++.+..++.--.+++++ +..... ....
T Consensus 7 ~~~~~~Yi~R~~~e~~~~~~i~~----~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 7 PLDSPFYIERPPAEQECYQEIVQ----PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCcccCchHHHHHHHHHHhc----CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHH
Confidence 44556777898666777777753 2458899999999999999999998765434445554 333211 1111
Q ss_pred -----hHhHHHhhhcC---------CCC----chhHHHHh-c--CcceEEEEeCCCCchh----hhhhhc---cc-CCC-
Q 047214 99 -----KILSEKLEVAG---------ANI----PHFTKERV-R--RMKVLIVLDDVNEVGQ----LEGLIG---EL-DQF- 148 (658)
Q Consensus 99 -----~~l~~~l~~~~---------~~~----~~~l~~~l-~--~~~~LlvlDdv~~~~~----~~~l~~---~l-~~~- 148 (658)
..+.+.++... ... ...+.+.+ + +++.+|++|+++..-. .+.+.. .+ ...
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 11112121110 001 23333332 2 5799999999975432 111111 11 110
Q ss_pred --C--CCCEEEEEecch-HHHHh----hcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcch
Q 047214 149 --G--PGSRIVVTTRDK-RVLEK----FRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLV 219 (658)
Q Consensus 149 --~--~~~~ilvttR~~-~~~~~----~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 219 (658)
. ..-++++....+ ..... .......+.|.+|+.+|..+|+.++... . . ....++|...++|+|..
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--~-~---~~~~~~l~~~tgGhP~L 235 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--F-S---QEQLEQLMDWTGGHPYL 235 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--C-C---HHHHHHHHHHHCCCHHH
Confidence 1 112222222111 11111 1234568999999999999998876321 1 1 22389999999999999
Q ss_pred hHHhhcccccc
Q 047214 220 PKVLGSSLCLK 230 (658)
Q Consensus 220 i~~~a~~l~~~ 230 (658)
+..++..+...
T Consensus 236 v~~~~~~l~~~ 246 (331)
T PF14516_consen 236 VQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHc
Confidence 99999888554
No 119
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.28 E-value=3.8e-05 Score=85.84 Aligned_cols=149 Identities=15% Similarity=0.232 Sum_probs=87.5
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc------cCceEEEeccccccccchhhHh
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE------FEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~~l 101 (658)
+.++||++++.++.+.|... ....+.++|++|+|||++|+.+++.+... .+..+|..... .++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~---~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~--------~ll 254 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR---RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG--------SLL 254 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc---CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHH--------HHh
Confidence 46999999999999988763 23455789999999999999999874321 12333322110 111
Q ss_pred HHHhhhc-CCCCc---hhHHHHh-cCcceEEEEeCCCCc----------hhhhhhhcccCCCCCCCEEEEEecchHH---
Q 047214 102 SEKLEVA-GANIP---HFTKERV-RRMKVLIVLDDVNEV----------GQLEGLIGELDQFGPGSRIVVTTRDKRV--- 163 (658)
Q Consensus 102 ~~~l~~~-~~~~~---~~l~~~l-~~~~~LlvlDdv~~~----------~~~~~l~~~l~~~~~~~~ilvttR~~~~--- 163 (658)
. +.. ..+.. ..+.+.+ +..+.+|++|+++.. .+...++..+.. ....++|.+|...+.
T Consensus 255 a---G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~ 330 (758)
T PRK11034 255 A---GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNI 330 (758)
T ss_pred c---ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHH
Confidence 0 000 00111 1222222 345789999999643 122223333222 223455555544432
Q ss_pred ---HHhhcCCCceEEcCCCChHHHHHHHHHH
Q 047214 164 ---LEKFRGEKKIYRVNGLEFEEAFEHFCNF 191 (658)
Q Consensus 164 ---~~~~~~~~~~~~l~~L~~~~~~~l~~~~ 191 (658)
...+.+....+.++..+.+++.+.+...
T Consensus 331 ~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~ 361 (758)
T PRK11034 331 FEKDRALARRFQKIDITEPSIEETVQIINGL 361 (758)
T ss_pred hhccHHHHhhCcEEEeCCCCHHHHHHHHHHH
Confidence 1223355678999999999999998754
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=1.9e-05 Score=84.00 Aligned_cols=184 Identities=13% Similarity=0.116 Sum_probs=114.3
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cccCc-------------------
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEFEG------------------- 82 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~~------------------- 82 (658)
.|..-.+++|-+...+.+..++... .-..+..++|+.|+||||+|+.+++.+- .....
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~g--rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~ 86 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNN--RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI 86 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC
Confidence 3456678999999999999998753 2345668999999999999999998842 21110
Q ss_pred -eEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEec
Q 047214 83 -RCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTR 159 (658)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR 159 (658)
++... . .....++.+.+.+.... . .-..++.-++|+|+++... ..+.++..+-.....+++|++|.
T Consensus 87 dv~eld---a-as~~gId~IRelie~~~------~-~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 87 DIIEMD---A-ASNRGIDDIRELIEQTK------Y-KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred eEEEec---c-ccccCHHHHHHHHHHHh------h-CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEEC
Confidence 11111 0 00011122222211000 0 0011345699999998765 35666666654445667776665
Q ss_pred ch-HHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 160 DK-RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 160 ~~-~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
+. .+.......+..+++.+++.++..+.+.+.+...+.. ..++.++.|++.++|.+--+.
T Consensus 156 d~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 156 DPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred ChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHH
Confidence 54 2333333557899999999999999988776444322 224567889999999885443
No 121
>PRK06620 hypothetical protein; Validated
Probab=98.27 E-value=1.5e-05 Score=75.41 Aligned_cols=161 Identities=12% Similarity=-0.011 Sum_probs=89.8
Q ss_pred CCCCcccc-cc-hHhhHHHHhcccCCCC-eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhH
Q 047214 26 SSNGLVGL-NS-RIEQIKPFLCMDLSDT-VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILS 102 (658)
Q Consensus 26 ~~~~~vGR-~~-~~~~l~~~l~~~~~~~-~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 102 (658)
-++.++|. .. ....+.+|-.....+. .+.+.|+|++|+|||+|++.+++.... .+.. .... .
T Consensus 15 fd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~---~~~~------~- 79 (214)
T PRK06620 15 PDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIK---DIFF------N- 79 (214)
T ss_pred chhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----EEcc---hhhh------c-
Confidence 34556676 22 2334444433211011 267899999999999999987775421 1111 0000 0
Q ss_pred HHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh--hhhhhcccCCCCCCCEEEEEecchHH-------HHhhcCCCce
Q 047214 103 EKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ--LEGLIGELDQFGPGSRIVVTTRDKRV-------LEKFRGEKKI 173 (658)
Q Consensus 103 ~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~ilvttR~~~~-------~~~~~~~~~~ 173 (658)
+ +.. ...-++++||++..++ +-.+...+. ..|..||+|++.++. .+.+ ....+
T Consensus 80 -----------~---~~~-~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl-~~gl~ 141 (214)
T PRK06620 80 -----------E---EIL-EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRI-KSVLS 141 (214)
T ss_pred -----------h---hHH-hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHH-hCCce
Confidence 0 111 1235788999975442 222222222 346678888875532 2223 34558
Q ss_pred EEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 174 YRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 174 ~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
+.++++++++-.+++.+.+..... .--+++++-|++.+.|..-.+.
T Consensus 142 ~~l~~pd~~~~~~~l~k~~~~~~l--~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 142 ILLNSPDDELIKILIFKHFSISSV--TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred EeeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHH
Confidence 999999999988888777642221 1224456777777766554433
No 122
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.26 E-value=1.8e-05 Score=90.39 Aligned_cols=152 Identities=12% Similarity=0.088 Sum_probs=86.7
Q ss_pred CCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc------CceEEEeccccccccchhh
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF------EGRCFLSDIRKNSETGGGK 99 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 99 (658)
.-+.++||+.++..+...|.. .....+.++|++|+|||++|+.++.++.+.. ...+|..++........
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r---~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~-- 250 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQR---RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAK-- 250 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhc---CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccc--
Confidence 446799999999999998875 3344577999999999999999999864321 22333321221110000
Q ss_pred HhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch---------hhhhhhcccCCCCCCCEEEEEecchHH--
Q 047214 100 ILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG---------QLEGLIGELDQFGPGSRIVVTTRDKRV-- 163 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~---------~~~~l~~~l~~~~~~~~ilvttR~~~~-- 163 (658)
...+..+.+++.+ ...+.+|++|+++... +...++.+.... ...++|-+|...+.
T Consensus 251 --------~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 251 --------YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTLDEYRQ 321 (857)
T ss_pred --------hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCCHHHHH
Confidence 0000111222221 2467999999997543 122333322221 23455555544432
Q ss_pred ----HHhhcCCCceEEcCCCChHHHHHHHHHH
Q 047214 164 ----LEKFRGEKKIYRVNGLEFEEAFEHFCNF 191 (658)
Q Consensus 164 ----~~~~~~~~~~~~l~~L~~~~~~~l~~~~ 191 (658)
..........+.+..-+.++..+.++..
T Consensus 322 ~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l 353 (857)
T PRK10865 322 YIEKDAALERRFQKVFVAEPSVEDTIAILRGL 353 (857)
T ss_pred HhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHH
Confidence 2222344556677766889888888654
No 123
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.23 E-value=1.2e-05 Score=84.90 Aligned_cols=165 Identities=16% Similarity=0.120 Sum_probs=97.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccc--cCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSE--FEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~Llvl 129 (658)
...+.|+|..|+|||+|+.++++.+... -..++++. ..+ + ...+...++... +..+.+.+.++. .-+||+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-~~~-f----~~~~~~~l~~~~-~~~~~~~~~~~~-~dvLiI 212 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-GDE-F----ARKAVDILQKTH-KEIEQFKNEICQ-NDVLII 212 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-HHH-H----HHHHHHHHHHhh-hHHHHHHHHhcc-CCEEEE
Confidence 4568899999999999999999975432 22334443 111 1 112222222110 113344444443 447889
Q ss_pred eCCCCch---h-hhhhhcccCCC-CCCCEEEEEecchH---------HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCC
Q 047214 130 DDVNEVG---Q-LEGLIGELDQF-GPGSRIVVTTRDKR---------VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEE 195 (658)
Q Consensus 130 Ddv~~~~---~-~~~l~~~l~~~-~~~~~ilvttR~~~---------~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~ 195 (658)
||+.... . .+.+...+... ..+..||+|+...+ +.+.+ ..+-++.+.+++.++-.+++.+++...
T Consensus 213 DDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~-~~Gl~~~L~~pd~e~r~~iL~~~~~~~ 291 (450)
T PRK14087 213 DDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRF-NMGLSIAIQKLDNKTATAIIKKEIKNQ 291 (450)
T ss_pred eccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHH-hCCceeccCCcCHHHHHHHHHHHHHhc
Confidence 9996543 1 22332222211 23456888865442 22222 445688899999999999999887433
Q ss_pred CCCCchhHHHHHHHHHHcCCCcchhHHhhc
Q 047214 196 NHCPEDLNWHSQRVVEYADGNPLVPKVLGS 225 (658)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~g~Plai~~~a~ 225 (658)
.....-.++++.-|++.+.|.|-.+..+..
T Consensus 292 gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 292 NIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred CCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 221123456788899999999977665554
No 124
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=3e-05 Score=85.23 Aligned_cols=180 Identities=13% Similarity=0.136 Sum_probs=112.9
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccC------c--------------
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE------G-------------- 82 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~------~-------------- 82 (658)
.|..-.+++|.+..++.|.+++... .-...+.++|+.|+||||+|+.+++.+..... +
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~--~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~ 88 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEG--RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSA 88 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhC--CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCC
Confidence 4456678999999999999988753 23456789999999999999999988431110 0
Q ss_pred --eEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCE
Q 047214 83 --RCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSR 153 (658)
Q Consensus 83 --~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ 153 (658)
++.+. . ......+. .+.+.+.+ ..++-++|+|+++... ..+.|+..+........
T Consensus 89 ~d~~~i~---~-~~~~~vd~------------ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv 152 (585)
T PRK14950 89 VDVIEMD---A-ASHTSVDD------------AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAI 152 (585)
T ss_pred CeEEEEe---c-cccCCHHH------------HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeE
Confidence 00000 0 00000111 11222222 2346799999997654 46667666554444556
Q ss_pred EEEEecc-hHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHH
Q 047214 154 IVVTTRD-KRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKV 222 (658)
Q Consensus 154 ilvttR~-~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 222 (658)
+|+++.+ ..+.......+..+.+.+++.++....+.+.+...+.. -.++.+..|++.++|.+..+..
T Consensus 153 ~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 153 FILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred EEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 6665543 33444443566789999999999998888776443322 2234678899999998864443
No 125
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1.6e-06 Score=63.97 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=18.2
Q ss_pred CccEEEecCCCccccccc-ccCCCCccEEeccCC
Q 047214 446 NLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHC 478 (658)
Q Consensus 446 ~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~ 478 (658)
+|++|++++|+++.+|.. +..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N 35 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN 35 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC
Confidence 456666666666665543 444555555555544
No 126
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.6e-08 Score=93.74 Aligned_cols=172 Identities=21% Similarity=0.260 Sum_probs=114.2
Q ss_pred cccceEEecccCCC--CCCCCC-CCCCccEEEecCCCcc-cccccccCCCCccEEeccCCCcccccC----CCcCCCccE
Q 047214 423 KNLRYLHWDKYPLR--TLPSNF-KPENLVELNLHFSKVE-QLWEGKKEAFKLKSINLSHCRHFIDMS----YPSAPNLET 494 (658)
Q Consensus 423 ~~L~~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~----l~~l~~L~~ 494 (658)
..|++|+|++..|+ ++-... .|.+|+-|.|.++.+. .+-..+.+-.+|+.|+++.|..++... +.+++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 37999999998777 333323 7889999999999876 344557788899999999998777776 888999999
Q ss_pred EEeecCCccc--cccccc-CCCCCCEEeccCCCCCCcCCC----CCCCCCCcEEeccCCCCccccCcccCCccEEEcccc
Q 047214 495 YLLDYTNFAC--VPSSIQ-NFKYLSALSFEGCKSLRSFPS----NFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQS 567 (658)
Q Consensus 495 L~l~~~~~~~--~~~~~~-~l~~L~~L~l~~~~~l~~~~~----~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~ 567 (658)
|++++..+.. +...+. --++|..|+++||...-.... ..++++|..|++++|..++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~---------------- 328 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN---------------- 328 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc----------------
Confidence 9998854421 111122 235788888888753222111 11466666666666543321
Q ss_pred ccccccccccCCCCCCEEecCCCccchhhhh---hhcCCCCCcEEeccCCc
Q 047214 568 AIEEVPSSIECLTDLEVLDLRDCKRLKRIST---RFCKLRSLVDLFLHGCL 615 (658)
Q Consensus 568 ~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~ 615 (658)
..-..+..++.|++|+++.|..+ +|. .+...|+|..|++.||.
T Consensus 329 ---~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 329 ---DCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ---hHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 11223567778888888887532 333 25667788888887764
No 127
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=3.7e-05 Score=83.28 Aligned_cols=189 Identities=13% Similarity=0.164 Sum_probs=113.8
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cc----cCceEEEeccccccccch
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SE----FEGRCFLSDIRKNSETGG 97 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~----f~~~~~~~~~~~~~~~~~ 97 (658)
.|..-.+++|.+..++.+.+++... .-.+...++|+.|+||||+|+.+++.+- .. +.+..... +........
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~--~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~-C~~i~~~~~ 87 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESN--KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS-CKSIDNDNS 87 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH-HHHHHcCCC
Confidence 3456678999999999999999763 2345788999999999999999999843 11 11110000 000000000
Q ss_pred hhHhHHHhhhcCC--CCchhHHHH--------hcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecc-hHHH
Q 047214 98 GKILSEKLEVAGA--NIPHFTKER--------VRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRD-KRVL 164 (658)
Q Consensus 98 ~~~l~~~l~~~~~--~~~~~l~~~--------l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~-~~~~ 164 (658)
.+.+ ...+. ...+.+++. ..+++-++|+|+++... .++.++..+........+|++|.+ ..+.
T Consensus 88 ~dv~----~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 88 LDVI----EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred CCeE----EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 0000 00000 001111111 13556789999998765 466777766544455556655543 3444
Q ss_pred HhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 165 EKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 165 ~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
......+..+.+.+++.++..+.+.+.+...+.. -.++.+..|++.++|.+-.+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 4444567789999999999998888776443322 23456788999999977533
No 128
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=2.7e-05 Score=78.59 Aligned_cols=155 Identities=15% Similarity=0.172 Sum_probs=94.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh-ccc--------------------cCceEEEeccccccccchhhHhHHHhhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF-SSE--------------------FEGRCFLSDIRKNSETGGGKILSEKLEVA 108 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~--------------------f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 108 (658)
.-...+.++|+.|+|||++|..+++.+ ++. .+...++.. ......-.++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~-~~~~~~i~id~iR~----- 93 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEP-EEADKTIKVDQVRE----- 93 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEec-cCCCCCCCHHHHHH-----
Confidence 345678899999999999999999983 211 111222210 00000011122222
Q ss_pred CCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHHhhcCCCceEEcCCCC
Q 047214 109 GANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLEKFRGEKKIYRVNGLE 180 (658)
Q Consensus 109 ~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~~~~~~~~~~~l~~L~ 180 (658)
+.+.+ .+++-++|+|+++... ....++..+-+-..+..+|++|.+. .+.....+.+..+.+.+++
T Consensus 94 -------l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~ 166 (328)
T PRK05707 94 -------LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPS 166 (328)
T ss_pred -------HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcC
Confidence 22222 2345567889998765 4666666655444566777777665 4444545677899999999
Q ss_pred hHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHh
Q 047214 181 FEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
.+++.+.+.+.... ..++.+..++..++|.|.....+
T Consensus 167 ~~~~~~~L~~~~~~------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 167 NEESLQWLQQALPE------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHHHHHHHhccc------CChHHHHHHHHHcCCCHHHHHHH
Confidence 99999988775311 11223567889999999754444
No 129
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.20 E-value=1.9e-05 Score=86.78 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=41.1
Q ss_pred CCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
|..-+.++|++..++.+.+.+.. .....+.|+|++|+||||+|+.+++..
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~---~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVAS---PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 44556799999999998887754 345679999999999999999998764
No 130
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=3e-05 Score=84.31 Aligned_cols=191 Identities=12% Similarity=0.105 Sum_probs=110.5
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cccC----ceEEEeccccccccch
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEFE----GRCFLSDIRKNSETGG 97 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~----~~~~~~~~~~~~~~~~ 97 (658)
.|..-.+++|.+...+.+.+++... .-.+...++|+.|+|||++|+.+++.+- .... +...-. +........
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~--~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~-C~~i~~g~~ 87 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQG--KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEI-CKAITNGSL 87 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHH-HHHHhcCCC
Confidence 4556789999999999999999863 2356677899999999999999998742 1110 000000 000000000
Q ss_pred hhHhH-HHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEE-EecchHHHHhhc
Q 047214 98 GKILS-EKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVV-TTRDKRVLEKFR 168 (658)
Q Consensus 98 ~~~l~-~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilv-ttR~~~~~~~~~ 168 (658)
.+.+. ......+.+..+.+.+.+ .++.-++|+|+++... .+..|+..+..-.....+|+ ||....+.....
T Consensus 88 ~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 88 MDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred CCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 00000 000000000022222222 3456799999998764 46667666544333444444 444444444443
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 169 GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 169 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
..+..+.+.+++.++..+.+...+...+... .++.+..|++.++|.+.
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMR 215 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 5677899999999999988887664333222 23457788888888775
No 131
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.20 E-value=8.5e-06 Score=74.31 Aligned_cols=212 Identities=16% Similarity=0.234 Sum_probs=110.6
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-cc-CceEEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-EF-EGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f-~~~~~~~~~~~~~~~~~~~~ 100 (658)
.|..-.+.||-++.++.+.-...+ ++.+.+.|.||+|+||||-+..+++..-. .+ +.+.-.. .++..+++.
T Consensus 22 rP~~l~dIVGNe~tv~rl~via~~---gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELN----ASdeRGIDv 94 (333)
T KOG0991|consen 22 RPSVLQDIVGNEDTVERLSVIAKE---GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELN----ASDERGIDV 94 (333)
T ss_pred CchHHHHhhCCHHHHHHHHHHHHc---CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhcc----CccccccHH
Confidence 445567899999998888777666 56788999999999999999999998443 22 2222222 122222222
Q ss_pred hHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh--hhhhhcccCCCCCCCEEEEEec-chHHHHhhcCCCceEEcC
Q 047214 101 LSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ--LEGLIGELDQFGPGSRIVVTTR-DKRVLEKFRGEKKIYRVN 177 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~ilvttR-~~~~~~~~~~~~~~~~l~ 177 (658)
+...+..- ++.-...-.++.-++|||+.+++.. -+.+....-.-...+|..+... ...+..-..+.+...+..
T Consensus 95 VRn~IK~F----AQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPIQSRCAiLRys 170 (333)
T KOG0991|consen 95 VRNKIKMF----AQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPIQSRCAILRYS 170 (333)
T ss_pred HHHHHHHH----HHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhHHhhhHhhhhc
Confidence 22211100 0000011124457899999988653 2222221111122333333222 222222222445666777
Q ss_pred CCChHHHHHHHHHHhcCCC--CCCch-----------hHHH---------------HHHHHHHcC-CCcchhHHhhcccc
Q 047214 178 GLEFEEAFEHFCNFAFEEN--HCPED-----------LNWH---------------SQRVVEYAD-GNPLVPKVLGSSLC 228 (658)
Q Consensus 178 ~L~~~~~~~l~~~~~~~~~--~~~~~-----------~~~~---------------~~~i~~~~~-g~Plai~~~a~~l~ 228 (658)
.|++.+...=+...+..+. ...+. ++.. .+.+.+.|+ .+|+.+..+..+..
T Consensus 171 klsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~ 250 (333)
T KOG0991|consen 171 KLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL 250 (333)
T ss_pred ccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH
Confidence 7887776654444332221 11111 1111 133444454 47777777777765
Q ss_pred cccHHHHHHHHHHHhhc
Q 047214 229 LKRKSHWENLLHDLNRI 245 (658)
Q Consensus 229 ~~~~~~w~~~~~~l~~~ 245 (658)
.+...+-.+.+..++..
T Consensus 251 ~~~~~~A~~il~~lw~l 267 (333)
T KOG0991|consen 251 KRNIDEALKILAELWKL 267 (333)
T ss_pred hccHHHHHHHHHHHHHc
Confidence 55555555555555544
No 132
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=3.1e-05 Score=84.85 Aligned_cols=180 Identities=14% Similarity=0.185 Sum_probs=112.5
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-c----------------------c
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-S----------------------E 79 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~----------------------~ 79 (658)
.|..-++++|.+...+.|.+++... .-...+.++|+.|+||||+|+.+++.+. . +
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~--~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~ 89 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATN--KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRS 89 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcC--CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCC
Confidence 3455678999999999999999763 2345688999999999999999998742 1 1
Q ss_pred cCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHH-HhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEE
Q 047214 80 FEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKE-RVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVV 156 (658)
Q Consensus 80 f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilv 156 (658)
|+. ..+. .. ....++.+.+++.. +.. -..+++-++|+|+++... .++.|+..+..-...+.+|+
T Consensus 90 ~n~-~~ld---~~-~~~~vd~Ir~li~~--------~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 90 YNI-HELD---AA-SNNSVDDIRNLIEQ--------VRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred Cce-EEec---cc-ccCCHHHHHHHHHH--------HhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 110 0110 00 00001111111110 000 012345689999998765 46667666654344555555
Q ss_pred -EecchHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcch
Q 047214 157 -TTRDKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLV 219 (658)
Q Consensus 157 -ttR~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 219 (658)
|++...+.......+..+++.+++.++....+.+.+...+.. ..++.+..|++.++|..--
T Consensus 157 ~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 157 ATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRD 218 (614)
T ss_pred EeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 445455555555677899999999999999888766443322 2234578899999987653
No 133
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.19 E-value=2.5e-05 Score=89.64 Aligned_cols=152 Identities=11% Similarity=0.120 Sum_probs=88.1
Q ss_pred CCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc------CceEEEeccccccccchhh
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF------EGRCFLSDIRKNSETGGGK 99 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 99 (658)
.-+.++||+.++..+...|.. .....+.++|++|+|||++|..+++++.+.+ ...+|..++.......
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r---~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~--- 244 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSR---RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGA--- 244 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhc---CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcc---
Confidence 346799999999999998875 3345566899999999999999999864421 2333332121110000
Q ss_pred HhHHHhhhcCCCCchhHH---HHh-c-CcceEEEEeCCCCch---------hhhhhhcccCCCCCCCEEEEEecchHH--
Q 047214 100 ILSEKLEVAGANIPHFTK---ERV-R-RMKVLIVLDDVNEVG---------QLEGLIGELDQFGPGSRIVVTTRDKRV-- 163 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~---~~l-~-~~~~LlvlDdv~~~~---------~~~~l~~~l~~~~~~~~ilvttR~~~~-- 163 (658)
... .+..+.++ +.+ + +++.+|++|+++... +...++..... ....++|.+|...+.
T Consensus 245 ---~~~----g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 245 ---KYR----GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGATTLDEYRK 316 (852)
T ss_pred ---hhh----hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeCcHHHHHH
Confidence 000 01111222 222 2 358999999997542 12222222221 122355555544432
Q ss_pred ----HHhhcCCCceEEcCCCChHHHHHHHHHH
Q 047214 164 ----LEKFRGEKKIYRVNGLEFEEAFEHFCNF 191 (658)
Q Consensus 164 ----~~~~~~~~~~~~l~~L~~~~~~~l~~~~ 191 (658)
..........+.+...+.++..++++..
T Consensus 317 ~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 317 YIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred HhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 2222345677889999999999988754
No 134
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=4.6e-05 Score=80.58 Aligned_cols=159 Identities=17% Similarity=0.145 Sum_probs=91.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhcccc-C-ceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEF-E-GRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f-~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~Llvl 129 (658)
...+.|+|++|+|||+|+.++++.+.+.. . .++|+. ..+. +..+...+. ....+.+.+..+...-+|++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~~~f-----~~~~~~~~~---~~~~~~f~~~~~~~~dvLlI 200 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SEKF-----LNDLVDSMK---EGKLNEFREKYRKKVDVLLI 200 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-HHHH-----HHHHHHHHh---cccHHHHHHHHHhcCCEEEE
Confidence 45699999999999999999999865543 2 344443 2111 111111111 11234455555555678999
Q ss_pred eCCCCch---hh-hhhhcccCCC-CCCCEEEEEec-chHHH----Hhhc---CCCceEEcCCCChHHHHHHHHHHhcCCC
Q 047214 130 DDVNEVG---QL-EGLIGELDQF-GPGSRIVVTTR-DKRVL----EKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEEN 196 (658)
Q Consensus 130 Ddv~~~~---~~-~~l~~~l~~~-~~~~~ilvttR-~~~~~----~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~ 196 (658)
||+.... .+ +.+...+... ..+..||+||. .+.-. .... ..+..+.+++.+.+.-.+++.+.+....
T Consensus 201 DDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~ 280 (440)
T PRK14088 201 DDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEH 280 (440)
T ss_pred echhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcC
Confidence 9997542 11 2222222111 23457888874 33211 1111 3345889999999999999988764332
Q ss_pred CCCchhHHHHHHHHHHcCCCcchhH
Q 047214 197 HCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 197 ~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
.. --++++..|++.+.|..-.+.
T Consensus 281 ~~--l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 281 GE--LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred CC--CCHHHHHHHHhccccCHHHHH
Confidence 22 224467778888777654443
No 135
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=2.1e-05 Score=85.93 Aligned_cols=195 Identities=13% Similarity=0.148 Sum_probs=112.2
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-ccc----CceEEEeccccccccch
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEF----EGRCFLSDIRKNSETGG 97 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f----~~~~~~~~~~~~~~~~~ 97 (658)
.|..=.+++|.+...+.|.+++... .-.....++|+.|+||||+|+.+++.+- .+. .+...-. +........
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~--~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~-c~~i~~g~~ 87 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTG--RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP-CVEITEGRS 87 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH-HHHHhcCCC
Confidence 3455678999999999999998753 2245678999999999999999998842 211 0000000 000000000
Q ss_pred hhHhHHHhhh--cCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEe-cchHHHHhh
Q 047214 98 GKILSEKLEV--AGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTT-RDKRVLEKF 167 (658)
Q Consensus 98 ~~~l~~~l~~--~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvtt-R~~~~~~~~ 167 (658)
.+.+. +-+. .+.+..+.+.+.+ ..+.-++|+|+++... ..+.|+..+-.-.....+|++| ....+....
T Consensus 88 ~d~~e-id~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 88 VDVFE-IDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred CCeee-eeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 00000 0000 0000022222222 2345689999998765 3566666654434455565544 444455454
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc-hhHHh
Q 047214 168 RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL-VPKVL 223 (658)
Q Consensus 168 ~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-ai~~~ 223 (658)
...+..+.+.+++.++....+...+...+.. -.++.+..|++.++|..- ++..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4667889999999999988887765433322 223457888999998663 44443
No 136
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.16 E-value=1.9e-06 Score=80.35 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=36.0
Q ss_pred CcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 29 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
+|+||+++++++...+....+...+++.|+|.+|+|||+++++++..+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999953333567999999999999999999999997766
No 137
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=5.5e-05 Score=82.90 Aligned_cols=192 Identities=16% Similarity=0.146 Sum_probs=111.2
Q ss_pred CCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-ccCceEEEeccccccc------cc
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGRCFLSDIRKNSE------TG 96 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f~~~~~~~~~~~~~~------~~ 96 (658)
|..-..++|.+...+.|.+++.... -...+.++|+.|+||||+|+.+++.+-. .......-. +..+.. ..
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~r--l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~-Cg~C~~C~~i~~g~ 88 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNR--IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP-CGKCELCRAIAAGN 88 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCC--CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC-CcccHHHHHHhcCC
Confidence 3455789999999999999998632 2357889999999999999999998432 111000000 000000 00
Q ss_pred hhhHhHHHhhhcCCCCchhHHHH---h-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHH
Q 047214 97 GGKILSEKLEVAGANIPHFTKER---V-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLE 165 (658)
Q Consensus 97 ~~~~l~~~l~~~~~~~~~~l~~~---l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~ 165 (658)
..+.+. +........+.+++. + .++.-++|+|+++... .++.|+..+-.-.....+|++|.+. .+..
T Consensus 89 h~D~~e--i~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 89 ALDVIE--IDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CccEEE--EeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 000000 000000001222222 1 2345689999998764 4667766665433445555544433 3444
Q ss_pred hhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHH
Q 047214 166 KFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKV 222 (658)
Q Consensus 166 ~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 222 (658)
.....+..+.+.+++.++....+.+.+...... ...+.+..|++.++|.+..+..
T Consensus 167 TIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 167 TIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 444667889999999999888887765432221 1234578899999998754443
No 138
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.16 E-value=2.6e-05 Score=83.23 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=92.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhcccc--CceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEF--EGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~Llvl 129 (658)
...+.|+|++|+|||+|+..+++.+.+.+ ..++++. ..... ..+...++ ....+.+.+.++. .-+|+|
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~~~~~-----~~~~~~~~---~~~~~~~~~~~~~-~dlLii 217 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-SEKFT-----NDFVNALR---NNTMEEFKEKYRS-VDVLLI 217 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHH-----HHHHHHHH---cCcHHHHHHHHhc-CCEEEE
Confidence 45689999999999999999999976653 2234443 11111 11111111 1123445555553 458899
Q ss_pred eCCCCchh----hhhhhcccCCC-CCCCEEEEEecchH---------HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCC
Q 047214 130 DDVNEVGQ----LEGLIGELDQF-GPGSRIVVTTRDKR---------VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEE 195 (658)
Q Consensus 130 Ddv~~~~~----~~~l~~~l~~~-~~~~~ilvttR~~~---------~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~ 195 (658)
||++.... .+.+...+... ..+..+++|+...+ +.+.+ .....+.+++.+.++-.+.+.+.+...
T Consensus 218 DDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl-~~gl~v~i~~pd~~~r~~il~~~~~~~ 296 (450)
T PRK00149 218 DDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRF-EWGLTVDIEPPDLETRIAILKKKAEEE 296 (450)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHh-cCCeeEEecCCCHHHHHHHHHHHHHHc
Confidence 99965321 12333222111 23455777776542 12222 344689999999999999998887443
Q ss_pred CCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 196 NHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
.. .-.+++++.|++.+.|..-.+.
T Consensus 297 ~~--~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 297 GI--DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred CC--CCCHHHHHHHHcCcCCCHHHHH
Confidence 22 2234467888888888765444
No 139
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.15 E-value=3.1e-05 Score=81.61 Aligned_cols=157 Identities=20% Similarity=0.190 Sum_probs=90.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhcccc--CceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEF--EGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~Llvl 129 (658)
...+.|+|++|+|||+|++++++.+.+.. ..++++. ..+... +.... +. ......+.+.+++ .-+|+|
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~~~~~~----~~~~~-~~---~~~~~~~~~~~~~-~dlLii 205 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-SEKFTN----DFVNA-LR---NNKMEEFKEKYRS-VDLLLI 205 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-HHHHHH----HHHHH-HH---cCCHHHHHHHHHh-CCEEEE
Confidence 45788999999999999999999865543 2344443 111110 11111 11 1123445555543 348889
Q ss_pred eCCCCchh----hhhhhcccCCC-CCCCEEEEEecchH---------HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCC
Q 047214 130 DDVNEVGQ----LEGLIGELDQF-GPGSRIVVTTRDKR---------VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEE 195 (658)
Q Consensus 130 Ddv~~~~~----~~~l~~~l~~~-~~~~~ilvttR~~~---------~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~ 195 (658)
||++.... .+.+...+... ..+..+|+|+...+ +.+.+ .....+.+.+.+.++-.+++.+.+...
T Consensus 206 DDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl-~~g~~v~i~~pd~~~r~~il~~~~~~~ 284 (405)
T TIGR00362 206 DDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRF-EWGLVVDIEPPDLETRLAILQKKAEEE 284 (405)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhc-cCCeEEEeCCCCHHHHHHHHHHHHHHc
Confidence 99975431 12233222211 23556788776432 11112 234578999999999999998887443
Q ss_pred CCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 196 NHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
... -.++.+..|++.+.|..-.+.
T Consensus 285 ~~~--l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 285 GLE--LPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred CCC--CCHHHHHHHHHhcCCCHHHHH
Confidence 222 224567778888877765443
No 140
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=3.8e-06 Score=93.11 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=34.0
Q ss_pred cceEEecccCCC-CCCCCC-CCCCccEEEecCCCcc-cccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeec
Q 047214 425 LRYLHWDKYPLR-TLPSNF-KPENLVELNLHFSKVE-QLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDY 499 (658)
Q Consensus 425 L~~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~ 499 (658)
+..|+|++|++. .+|..+ .+++|+.|+|++|.+. .+|..++.+++|+.|++++|.....+| ++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 334444444443 333333 4444444444444443 334444444444444444443333334 44444444444444
Q ss_pred CCc
Q 047214 500 TNF 502 (658)
Q Consensus 500 ~~~ 502 (658)
|.+
T Consensus 500 N~l 502 (623)
T PLN03150 500 NSL 502 (623)
T ss_pred Ccc
Confidence 444
No 141
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.14 E-value=2.2e-05 Score=77.38 Aligned_cols=155 Identities=16% Similarity=0.230 Sum_probs=82.6
Q ss_pred CcccccchHhhHHH---Hhcc---------cCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc--CceEEEeccccccc
Q 047214 29 GLVGLNSRIEQIKP---FLCM---------DLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF--EGRCFLSDIRKNSE 94 (658)
Q Consensus 29 ~~vGR~~~~~~l~~---~l~~---------~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~ 94 (658)
.++|.+...++|.+ |+.. ...+....+.++|++|+||||+|+.+++.+...- ....++. ++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~~-- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VERA-- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecHH--
Confidence 46777766655543 3311 0113456788999999999999999998743211 1111111 1110
Q ss_pred cchhhHhHHHhhhcCCCCchhHHHHhcC-cceEEEEeCCCCch----------hhhhhhcccCCCCCCCEEEEEecchHH
Q 047214 95 TGGGKILSEKLEVAGANIPHFTKERVRR-MKVLIVLDDVNEVG----------QLEGLIGELDQFGPGSRIVVTTRDKRV 163 (658)
Q Consensus 95 ~~~~~~l~~~l~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~----------~~~~l~~~l~~~~~~~~ilvttR~~~~ 163 (658)
+++....+.. ...+.+.++. ...+|++|+++... ..+.++...........+++++...+.
T Consensus 84 ----~l~~~~~g~~----~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~ 155 (261)
T TIGR02881 84 ----DLVGEYIGHT----AQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEM 155 (261)
T ss_pred ----Hhhhhhccch----HHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchh
Confidence 1111111111 1222222221 24589999997532 344455544433333345555543322
Q ss_pred H------HhhcCC-CceEEcCCCChHHHHHHHHHHhcC
Q 047214 164 L------EKFRGE-KKIYRVNGLEFEEAFEHFCNFAFE 194 (658)
Q Consensus 164 ~------~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~ 194 (658)
. +..... ...+.+++++.++..+++.+.+..
T Consensus 156 ~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 156 DYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred HHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 1 112122 357899999999999999887643
No 142
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.13 E-value=3.5e-05 Score=80.26 Aligned_cols=163 Identities=21% Similarity=0.168 Sum_probs=101.1
Q ss_pred chHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh-hHhHHHhhhcCCCCc
Q 047214 35 SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG-KILSEKLEVAGANIP 113 (658)
Q Consensus 35 ~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~ 113 (658)
.-+.++.+.+.. ...++.|.|+-++||||+++.+.+...+. .+++...........+ +.+..
T Consensus 24 ~~~~~l~~~~~~----~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~---------- 86 (398)
T COG1373 24 KLLPRLIKKLDL----RPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRA---------- 86 (398)
T ss_pred hhhHHHHhhccc----CCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHH----------
Confidence 334455554433 22299999999999999998877776554 5555522222222211 11111
Q ss_pred hhHHHHhcCcceEEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchHH-----HHhhcCCCceEEcCCCChHHHHHHH
Q 047214 114 HFTKERVRRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRV-----LEKFRGEKKIYRVNGLEFEEAFEHF 188 (658)
Q Consensus 114 ~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~-----~~~~~~~~~~~~l~~L~~~~~~~l~ 188 (658)
+.+.-..++..++||.|....+|...+..+...++. ++++|+-+... +....|....+.+.|||..|-..+-
T Consensus 87 --~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 87 --YIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred --HHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 111111277899999999999999999998876666 88888877643 3334577889999999999887653
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHh
Q 047214 189 CNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
. +......... .-+-.-.+||.|.++..-
T Consensus 164 ~-----~~~~~~~~~~-~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 164 G-----EEIEPSKLEL-LFEKYLETGGFPESVKAD 192 (398)
T ss_pred c-----cccchhHHHH-HHHHHHHhCCCcHHHhCc
Confidence 3 1000111111 222233678999876543
No 143
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=5.2e-05 Score=76.15 Aligned_cols=185 Identities=15% Similarity=0.159 Sum_probs=111.7
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh-ccc--------------cCceEEEeccccc
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSE--------------FEGRCFLSDIRKN 92 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~--------------f~~~~~~~~~~~~ 92 (658)
..++|.+...+.+.+.+... .-.....++|+.|+||+++|..+++.+ .+. ++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~--rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN--RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 35889999999999988763 224789999999999999999999983 221 2333443311000
Q ss_pred cccchh--hHhHHHhh--hc-CCCC----chhHHHHhc-----CcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEE
Q 047214 93 SETGGG--KILSEKLE--VA-GANI----PHFTKERVR-----RMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVV 156 (658)
Q Consensus 93 ~~~~~~--~~l~~~l~--~~-~~~~----~~~l~~~l~-----~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilv 156 (658)
..... +... ..+ .. .... .+.+.+.+. +.+-++|+|+++... ....++..+-+-. .+.+|+
T Consensus 82 -~g~~~~~~~~~-~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fIL 158 (314)
T PRK07399 82 -QGKLITASEAE-EAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLIL 158 (314)
T ss_pred -cccccchhhhh-hccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEE
Confidence 00000 0000 000 00 0000 233334433 457899999998765 3555666554333 444554
Q ss_pred Ee-cchHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHH
Q 047214 157 TT-RDKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKV 222 (658)
Q Consensus 157 tt-R~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 222 (658)
+| +...+.....+.+..+.+.+++.++..+.+.+....+ ........++..++|.|.....
T Consensus 159 i~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-----~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 159 IAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-----ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-----cchhHHHHHHHHcCCCHHHHHH
Confidence 44 4445555555778999999999999999998864211 1111246789999999975544
No 144
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.11 E-value=2.9e-05 Score=80.41 Aligned_cols=180 Identities=15% Similarity=0.192 Sum_probs=101.6
Q ss_pred CCCCCCCcccccchHhhHHHHhccc---------CC-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD---------LS-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKN 92 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~---------~~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 92 (658)
|...-..+.|.+..+++|.+.+... .+ ..++-+.++|++|+|||++|+.+++.....| +.+. ..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~-~s-- 213 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV-GS-- 213 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH--
Confidence 4444467889999998888876411 01 3467788999999999999999999765443 1111 00
Q ss_pred cccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch------------h----hhhhhcccCC--CCCCCEE
Q 047214 93 SETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG------------Q----LEGLIGELDQ--FGPGSRI 154 (658)
Q Consensus 93 ~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------------~----~~~l~~~l~~--~~~~~~i 154 (658)
.......+.......+.+.......+.+|++|+++... . +..++..+.. ...+..|
T Consensus 214 ------~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~V 287 (398)
T PTZ00454 214 ------EFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKV 287 (398)
T ss_pred ------HHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEE
Confidence 11111111110000122233334578999999986421 1 1222222221 1245678
Q ss_pred EEEecchHHH-Hhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 155 VVTTRDKRVL-EKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 155 lvttR~~~~~-~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
|+||...... ..+. .-...+.+...+.++..++|.....+.....+ . ....+++.+.|.-
T Consensus 288 I~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d-v--d~~~la~~t~g~s 351 (398)
T PTZ00454 288 IMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE-V--DLEDFVSRPEKIS 351 (398)
T ss_pred EEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc-c--CHHHHHHHcCCCC
Confidence 8888765422 2221 23557889988998888888776533222111 1 2456777777654
No 145
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.10 E-value=6.9e-05 Score=74.45 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=85.0
Q ss_pred CcccccchHhhHHHHhc---c-----cC----CCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc--CceEEEeccccccc
Q 047214 29 GLVGLNSRIEQIKPFLC---M-----DL----SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF--EGRCFLSDIRKNSE 94 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~---~-----~~----~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~ 94 (658)
.++|-++..++|.++.. . .. ......+.++|++|+|||++|+.+++.+.+.. ...-++. +..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~-v~~--- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS-VTR--- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE-ecH---
Confidence 36887777776655322 1 00 01233688999999999999998888754321 1111222 111
Q ss_pred cchhhHhHHHhhhcCCCCchhHHHHhcC-cceEEEEeCCCCc-----------hhhhhhhcccCCCCCCCEEEEEecchH
Q 047214 95 TGGGKILSEKLEVAGANIPHFTKERVRR-MKVLIVLDDVNEV-----------GQLEGLIGELDQFGPGSRIVVTTRDKR 162 (658)
Q Consensus 95 ~~~~~~l~~~l~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~-----------~~~~~l~~~l~~~~~~~~ilvttR~~~ 162 (658)
. +++....+.. .....+.++. ..-+|+||+++.. +.++.++..+.....+.+||+++....
T Consensus 99 -~--~l~~~~~g~~----~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 99 -D--DLVGQYIGHT----APKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDR 171 (284)
T ss_pred -H--HHhHhhcccc----hHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH
Confidence 0 1222222211 1222222222 3469999999743 124455555544445667777765432
Q ss_pred HHHhh-------cCCCceEEcCCCChHHHHHHHHHHhc
Q 047214 163 VLEKF-------RGEKKIYRVNGLEFEEAFEHFCNFAF 193 (658)
Q Consensus 163 ~~~~~-------~~~~~~~~l~~L~~~~~~~l~~~~~~ 193 (658)
..... ......+.+++++.++..+++...+.
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 22111 12246799999999999999887763
No 146
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.05 E-value=8.8e-05 Score=78.21 Aligned_cols=154 Identities=13% Similarity=0.058 Sum_probs=87.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeC
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDD 131 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDd 131 (658)
...+.|+|+.|+|||+|+..+++.+.+....++++. ... +. ..+...++. ...+.+++..+ ..-+|++||
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~~~-f~----~~~~~~l~~---~~~~~f~~~~~-~~dvLiIDD 210 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-SEL-FT----EHLVSAIRS---GEMQRFRQFYR-NVDALFIED 210 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-HHH-HH----HHHHHHHhc---chHHHHHHHcc-cCCEEEEcc
Confidence 356889999999999999999998765444445544 111 10 112222221 11334555444 345888899
Q ss_pred CCCchh----hhhhhcccCC-CCCCCEEEEEecchH-----HHHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCC
Q 047214 132 VNEVGQ----LEGLIGELDQ-FGPGSRIVVTTRDKR-----VLEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHC 198 (658)
Q Consensus 132 v~~~~~----~~~l~~~l~~-~~~~~~ilvttR~~~-----~~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 198 (658)
+..... .+.+...+.. ...+..||+||...+ +...+. ..+..+.+.+++.++..+++.+.+.....
T Consensus 211 iq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~- 289 (445)
T PRK12422 211 IEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSI- 289 (445)
T ss_pred hhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCC-
Confidence 865432 1222222211 123567888875432 111221 33468999999999999999887643322
Q ss_pred CchhHHHHHHHHHHcCCCc
Q 047214 199 PEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 199 ~~~~~~~~~~i~~~~~g~P 217 (658)
.-.++++.-|++...+.-
T Consensus 290 -~l~~evl~~la~~~~~di 307 (445)
T PRK12422 290 -RIEETALDFLIEALSSNV 307 (445)
T ss_pred -CCCHHHHHHHHHhcCCCH
Confidence 122345566666666543
No 147
>CHL00181 cbbX CbbX; Provisional
Probab=98.05 E-value=0.00025 Score=70.37 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=84.9
Q ss_pred CcccccchHhhHHHHhc---cc---------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc-c-CceEEEeccccccc
Q 047214 29 GLVGLNSRIEQIKPFLC---MD---------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-F-EGRCFLSDIRKNSE 94 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~---~~---------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f-~~~~~~~~~~~~~~ 94 (658)
.++|-+...++|.++.. .. .......+.++|++|+|||++|+.+++..... + ...-|+. ++.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-v~~--- 99 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-VTR--- 99 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-ecH---
Confidence 47787776665554432 10 11223458899999999999999999874321 1 1111222 111
Q ss_pred cchhhHhHHHhhhcCCCCchhHHHHhc-CcceEEEEeCCCCc-----------hhhhhhhcccCCCCCCCEEEEEecchH
Q 047214 95 TGGGKILSEKLEVAGANIPHFTKERVR-RMKVLIVLDDVNEV-----------GQLEGLIGELDQFGPGSRIVVTTRDKR 162 (658)
Q Consensus 95 ~~~~~~l~~~l~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~-----------~~~~~l~~~l~~~~~~~~ilvttR~~~ 162 (658)
-+++....+.. .....+.++ ...-+|++|+++.. +..+.+...+.....+.+||+++....
T Consensus 100 ---~~l~~~~~g~~----~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~ 172 (287)
T CHL00181 100 ---DDLVGQYIGHT----APKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDR 172 (287)
T ss_pred ---HHHHHHHhccc----hHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHH
Confidence 02222222211 111222222 13469999999753 123444444443344566777765433
Q ss_pred HHH------hh-cCCCceEEcCCCChHHHHHHHHHHhcC
Q 047214 163 VLE------KF-RGEKKIYRVNGLEFEEAFEHFCNFAFE 194 (658)
Q Consensus 163 ~~~------~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~ 194 (658)
+.. .. ......+.+++++.++..+++...+..
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 221 11 123568999999999999998887643
No 148
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.05 E-value=2e-05 Score=82.17 Aligned_cols=178 Identities=16% Similarity=0.209 Sum_probs=100.2
Q ss_pred CCCCCcccccchHhhHHHHhccc---------CC-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccc
Q 047214 25 DSSNGLVGLNSRIEQIKPFLCMD---------LS-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSE 94 (658)
Q Consensus 25 ~~~~~~vGR~~~~~~l~~~l~~~---------~~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 94 (658)
..=..+.|.+..++++.+.+... -+ ...+.+.++|++|+|||++|+.+++.....|-. +. .+
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V~-~s---- 251 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR---VV-GS---- 251 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---Ee-cc----
Confidence 33466789999999998877521 00 235568899999999999999999986655421 11 01
Q ss_pred cchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch------------h----hhhhhcccCC--CCCCCEEEE
Q 047214 95 TGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG------------Q----LEGLIGELDQ--FGPGSRIVV 156 (658)
Q Consensus 95 ~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------------~----~~~l~~~l~~--~~~~~~ilv 156 (658)
++.....+.......+.+...-...+.+++||+++... . +..++..+.. ...+..||+
T Consensus 252 ----eL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ 327 (438)
T PTZ00361 252 ----ELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIM 327 (438)
T ss_pred ----hhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEE
Confidence 11111111100000122222334567899999975321 0 1122222211 123567888
Q ss_pred EecchHHH-Hhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 157 TTRDKRVL-EKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 157 ttR~~~~~-~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
||...... ..+. .....|.+...+.++..++|..+.......... ....++..+.|.-
T Consensus 328 ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv---dl~~la~~t~g~s 389 (438)
T PTZ00361 328 ATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV---DLEEFIMAKDELS 389 (438)
T ss_pred ecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc---CHHHHHHhcCCCC
Confidence 88766432 2221 235688999999999999998776433221111 1356666666644
No 149
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=4.8e-07 Score=85.32 Aligned_cols=195 Identities=11% Similarity=0.057 Sum_probs=120.7
Q ss_pred CCCCcccccceEEecccCCCCCCCCC----CCCCccEEEecCCCcccccccc-cCCCCccEEeccCCCc-ccccC--CCc
Q 047214 417 GLDYLPKNLRYLHWDKYPLRTLPSNF----KPENLVELNLHFSKVEQLWEGK-KEAFKLKSINLSHCRH-FIDMS--YPS 488 (658)
Q Consensus 417 ~~~~l~~~L~~L~l~~~~l~~lp~~~----~l~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~l~~~~~-~~~~~--l~~ 488 (658)
.++....+++.|+|.+|.|..+.... ++++|++|+|++|.+..-.... ..+.+|++|-+.+... ++... +..
T Consensus 65 ~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~ 144 (418)
T KOG2982|consen 65 LFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDD 144 (418)
T ss_pred HHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhc
Confidence 34444558888999999887665543 7889999999999776332222 3556888888877642 22222 677
Q ss_pred CCCccEEEeecCCccccc---ccccCC-CCCCEEeccCCCCCCcCCC---CCCCCCCcEEeccCCCCcc----ccCcccC
Q 047214 489 APNLETYLLDYTNFACVP---SSIQNF-KYLSALSFEGCKSLRSFPS---NFRFVCPVTINFSSCVNLI----EFPQISG 557 (658)
Q Consensus 489 l~~L~~L~l~~~~~~~~~---~~~~~l-~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~----~~~~~~~ 557 (658)
+|.+++|.++.|+...+- ...... +.+++|+..+|........ .-.++++..+.+..|+.-+ .-...++
T Consensus 145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p 224 (418)
T KOG2982|consen 145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFP 224 (418)
T ss_pred chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCC
Confidence 888888888877553321 111111 2455565555532111111 1136677777777664221 1122345
Q ss_pred CccEEEccccccccccc--cccCCCCCCEEecCCCccchhhhhh------hcCCCCCcEEec
Q 047214 558 KITRLYLGQSAIEEVPS--SIECLTDLEVLDLRDCKRLKRISTR------FCKLRSLVDLFL 611 (658)
Q Consensus 558 ~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~------~~~l~~L~~L~l 611 (658)
.+..|+|+.++|.+... .+.+++.|..|-+++++....+... ++++++++.|+=
T Consensus 225 ~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 225 SLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNG 286 (418)
T ss_pred cchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecC
Confidence 66688888888886544 3788999999999999866554432 456777777753
No 150
>PLN03150 hypothetical protein; Provisional
Probab=98.01 E-value=1.1e-05 Score=89.55 Aligned_cols=104 Identities=22% Similarity=0.285 Sum_probs=81.1
Q ss_pred CccEEEecCCCcc-cccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcc-cccccccCCCCCCEEecc
Q 047214 446 NLVELNLHFSKVE-QLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFA-CVPSSIQNFKYLSALSFE 521 (658)
Q Consensus 446 ~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~ 521 (658)
.++.|+|++|.+. .+|..+..+++|+.|+|++|.....+| ++.+++|+.|++++|++. .+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788899999887 677788899999999999986666777 888999999999998885 578888899999999999
Q ss_pred CCCCCCcCCCCCC--CCCCcEEeccCCCCc
Q 047214 522 GCKSLRSFPSNFR--FVCPVTINFSSCVNL 549 (658)
Q Consensus 522 ~~~~l~~~~~~~~--~~~L~~L~l~~~~~l 549 (658)
+|.....+|.... ..++..+++.+|..+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 8866666776442 235556666665433
No 151
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.00 E-value=0.00027 Score=71.63 Aligned_cols=205 Identities=17% Similarity=0.138 Sum_probs=116.8
Q ss_pred HHHHHHHhhhhcccCCCCCCCcccccchHhhHHHHhcccC-CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccC--ceEE
Q 047214 9 IVEDVLKNLEKATVATDSSNGLVGLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE--GRCF 85 (658)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~l~~~~-~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~--~~~~ 85 (658)
+.+...+.+..+ ..+..++||+.|+..+.+|+.... .+..+.+-|.|.+|.|||.+...++.+...... .+++
T Consensus 135 ~~~~~~~~l~~t----~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~ 210 (529)
T KOG2227|consen 135 ISEQRSESLLNT----APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVY 210 (529)
T ss_pred HHHHHHHHHHhc----CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEE
Confidence 444444445544 456789999999999999998532 156788999999999999999999998665433 3355
Q ss_pred Eeccccccccchh-hHhHHHhhhcCCCC-----chhHHHHhcCc--ceEEEEeCCCCchh--hhhhhccc-CCCCCCCEE
Q 047214 86 LSDIRKNSETGGG-KILSEKLEVAGANI-----PHFTKERVRRM--KVLIVLDDVNEVGQ--LEGLIGEL-DQFGPGSRI 154 (658)
Q Consensus 86 ~~~~~~~~~~~~~-~~l~~~l~~~~~~~-----~~~l~~~l~~~--~~LlvlDdv~~~~~--~~~l~~~l-~~~~~~~~i 154 (658)
+.+.+-....... .+...++....... .+.+.+..... .+|+|+|+++.... -..+...+ +...+++++
T Consensus 211 inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~ 290 (529)
T KOG2227|consen 211 INCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRI 290 (529)
T ss_pred EeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCccee
Confidence 4422211111112 33333322221111 23344444332 69999999866431 11222222 122456666
Q ss_pred EEEecch---------HHHHh-hcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 155 VVTTRDK---------RVLEK-FRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 155 lvttR~~---------~~~~~-~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
|+..-.. .-... ..-....+...|.+.++-.+.|.+++..... .......++..++++.|.--
T Consensus 291 iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t-~~~~~~Aie~~ArKvaa~SG 363 (529)
T KOG2227|consen 291 ILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST-SIFLNAAIELCARKVAAPSG 363 (529)
T ss_pred eeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc-cccchHHHHHHHHHhccCch
Confidence 5543221 11111 1124568888999999999999998744322 22233344555555555443
No 152
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.97 E-value=1e-07 Score=94.00 Aligned_cols=216 Identities=18% Similarity=0.217 Sum_probs=122.8
Q ss_pred ccceEEeccc-CCCC--CCCCC-CCCCccEEEecCCC-ccc--ccccccCCCCccEEeccCCCcccccC----CCcCCCc
Q 047214 424 NLRYLHWDKY-PLRT--LPSNF-KPENLVELNLHFSK-VEQ--LWEGKKEAFKLKSINLSHCRHFIDMS----YPSAPNL 492 (658)
Q Consensus 424 ~L~~L~l~~~-~l~~--lp~~~-~l~~L~~L~L~~~~-i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~----l~~l~~L 492 (658)
.|++|++..| .|+. +.... .+++|++|+++++. |+. +-....+++.++.+...+|.....-. =+.+..+
T Consensus 191 ~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i 270 (483)
T KOG4341|consen 191 KLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI 270 (483)
T ss_pred hhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence 5666666553 2331 11111 56777777777763 221 21223344556666666664332222 1223334
Q ss_pred cEEEeec-CCcccc--cccccCCCCCCEEeccCCCCCCcCCC---CCCCCCCcEEeccCCCCcc-----ccCcccCCccE
Q 047214 493 ETYLLDY-TNFACV--PSSIQNFKYLSALSFEGCKSLRSFPS---NFRFVCPVTINFSSCVNLI-----EFPQISGKITR 561 (658)
Q Consensus 493 ~~L~l~~-~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~-----~~~~~~~~L~~ 561 (658)
..+++.. +.+.+. ...-..+..|+.|..++|..+++.+- ..+.++|+.+.+++|..++ .+...+..|+.
T Consensus 271 ~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~ 350 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLER 350 (483)
T ss_pred hccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhh
Confidence 4444333 233221 12234566777777777766555432 2256778888888776543 23345667777
Q ss_pred EEcccccccc---ccccccCCCCCCEEecCCCccchhh-----hhhhcCCCCCcEEeccCCcCCcc-----CCCCCCccc
Q 047214 562 LYLGQSAIEE---VPSSIECLTDLEVLDLRDCKRLKRI-----STRFCKLRSLVDLFLHGCLNLQS-----LPALPLCLK 628 (658)
Q Consensus 562 L~l~~~~i~~---~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~l~~-----l~~l~~~L~ 628 (658)
+++..+.... +-..-.+++.|+.|.+++|....+. ...-.++..|..+.+++|+.+.. +...++ |+
T Consensus 351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~-Le 429 (483)
T KOG4341|consen 351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN-LE 429 (483)
T ss_pred hcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc-cc
Confidence 7777654431 2222357889999999988654332 33345677899999999986543 335777 99
Q ss_pred EEeccCCccccc
Q 047214 629 SLDLRDCKMLQS 640 (658)
Q Consensus 629 ~L~l~~~~~l~~ 640 (658)
.+++.+|..+..
T Consensus 430 ri~l~~~q~vtk 441 (483)
T KOG4341|consen 430 RIELIDCQDVTK 441 (483)
T ss_pred eeeeechhhhhh
Confidence 999988875543
No 153
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.97 E-value=2.9e-07 Score=90.92 Aligned_cols=213 Identities=21% Similarity=0.258 Sum_probs=108.1
Q ss_pred CCCCccEEEecCC-Ccccc--cccccCCCCccEEeccCCCcccccC----CCcCCCccEEEeec-CC--cccccccccCC
Q 047214 443 KPENLVELNLHFS-KVEQL--WEGKKEAFKLKSINLSHCRHFIDMS----YPSAPNLETYLLDY-TN--FACVPSSIQNF 512 (658)
Q Consensus 443 ~l~~L~~L~L~~~-~i~~l--~~~~~~l~~L~~L~l~~~~~~~~~~----l~~l~~L~~L~l~~-~~--~~~~~~~~~~l 512 (658)
.+.+|++|++..| .++.. -.-...+++|++|+++.|..+..-. ..+...++.+...+ .. +..+-..-+.+
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~ 267 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYC 267 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccC
Confidence 4566666666553 33321 1112345566666666665444322 34444444444433 01 11111112333
Q ss_pred CCCCEEeccCCCCCCcCCC---CCCCCCCcEEeccCCCCccccC-----cccCCccEEEccccc-ccccccc--ccCCCC
Q 047214 513 KYLSALSFEGCKSLRSFPS---NFRFVCPVTINFSSCVNLIEFP-----QISGKITRLYLGQSA-IEEVPSS--IECLTD 581 (658)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~-----~~~~~L~~L~l~~~~-i~~~~~~--~~~l~~ 581 (658)
.-+.++++..|..+++..- ...+..|+.|..++|..++..+ ....+|+.|-+..+. ++..... -.+.+.
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 4455555556655555332 1145667777777776654332 344667777666543 3322211 245677
Q ss_pred CCEEecCCCccch--hhhhhhcCCCCCcEEeccCCcCCccCC---------CCCCcccEEeccCCccccccC-C---CCC
Q 047214 582 LEVLDLRDCKRLK--RISTRFCKLRSLVDLFLHGCLNLQSLP---------ALPLCLKSLDLRDCKMLQSLP-E---LPS 646 (658)
Q Consensus 582 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~l~---------~l~~~L~~L~l~~~~~l~~i~-~---~~~ 646 (658)
|+.+++.+|.... .+...-.+++.|++|.+++|..++.-. ++.. |+.+.+++|+.+..-. + .-+
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~-l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEG-LEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccc-cceeeecCCCCchHHHHHHHhhCc
Confidence 7777777665332 223333467778888777776554431 3555 7777777777543221 1 223
Q ss_pred CccEEeccCC
Q 047214 647 CLEALDLTSC 656 (658)
Q Consensus 647 ~L~~L~l~~~ 656 (658)
+|+.+++.+|
T Consensus 427 ~Leri~l~~~ 436 (483)
T KOG4341|consen 427 NLERIELIDC 436 (483)
T ss_pred ccceeeeech
Confidence 5666666655
No 154
>CHL00176 ftsH cell division protein; Validated
Probab=97.97 E-value=7e-05 Score=82.16 Aligned_cols=173 Identities=18% Similarity=0.229 Sum_probs=97.7
Q ss_pred CCcccccchHhhHHHHhc---ccC------CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh
Q 047214 28 NGLVGLNSRIEQIKPFLC---MDL------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG 98 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~---~~~------~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 98 (658)
..+.|.++..+++.+.+. ... ...++-+.++|++|+|||++|+.++......| +. ++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~-is~s------ 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FS-ISGS------ 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----ee-ccHH------
Confidence 568888877776666543 211 02245689999999999999999998753322 11 1110
Q ss_pred hHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch------------h----hhhhhcccCC--CCCCCEEEEEecc
Q 047214 99 KILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG------------Q----LEGLIGELDQ--FGPGSRIVVTTRD 160 (658)
Q Consensus 99 ~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------------~----~~~l~~~l~~--~~~~~~ilvttR~ 160 (658)
+......+.......+.+.+..+..+.+|++|+++... . +..++..+.. ...+..||.||..
T Consensus 251 ~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~ 330 (638)
T CHL00176 251 EFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNR 330 (638)
T ss_pred HHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCc
Confidence 00011111100011233444555678999999996431 1 2333333221 1245566777766
Q ss_pred hHH-HHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC
Q 047214 161 KRV-LEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADG 215 (658)
Q Consensus 161 ~~~-~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g 215 (658)
... ...+. .....+.+...+.++-.++++.++...... .......+++.+.|
T Consensus 331 ~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 331 VDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred hHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 542 22221 234688899889999999998876442111 12235677777777
No 155
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.96 E-value=9.4e-05 Score=78.42 Aligned_cols=163 Identities=20% Similarity=0.302 Sum_probs=92.2
Q ss_pred CCCCCCCcccccchHhhHHHHhccc---------CC-CCeEEEEEEcCCCCcHHHHHHHHHHhhcccc-----CceEEEe
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD---------LS-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEF-----EGRCFLS 87 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~---------~~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f-----~~~~~~~ 87 (658)
|...=..+.|.+..++++...+... .+ ..++-+.++|++|+|||++|+++++.+...+ ....++.
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 4444466888999999998876421 00 2356688999999999999999999865442 1233332
Q ss_pred ccccccccchhhHhHHHhhhcCCCC---chhHHHH-hcCcceEEEEeCCCCch---------h-----hhhhhcccCCCC
Q 047214 88 DIRKNSETGGGKILSEKLEVAGANI---PHFTKER-VRRMKVLIVLDDVNEVG---------Q-----LEGLIGELDQFG 149 (658)
Q Consensus 88 ~~~~~~~~~~~~~l~~~l~~~~~~~---~~~l~~~-l~~~~~LlvlDdv~~~~---------~-----~~~l~~~l~~~~ 149 (658)
+... +++....+...... .+..++. -.+++.++++|+++..- + +..++..+....
T Consensus 257 -v~~~------eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~ 329 (512)
T TIGR03689 257 -IKGP------ELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE 329 (512)
T ss_pred -ccch------hhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc
Confidence 2211 11111111000000 1111121 12468999999996431 1 223444332211
Q ss_pred --CCCEEEEEecchH-HHHhhc---CCCceEEcCCCChHHHHHHHHHHh
Q 047214 150 --PGSRIVVTTRDKR-VLEKFR---GEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 150 --~~~~ilvttR~~~-~~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
.+..||.||.... +..++. .....|.++..+.++..++|..+.
T Consensus 330 ~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 330 SLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3444566665443 222321 234579999999999999998886
No 156
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=6.7e-05 Score=81.69 Aligned_cols=193 Identities=12% Similarity=0.125 Sum_probs=103.0
Q ss_pred CCCCCCCcccccchHhhHHHHhcccC--CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccccc-----
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSET----- 95 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~--~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~----- 95 (658)
.|..-.+++|-++.++++..|+.... ....++++|+|++|+||||+++.++..... +..-|...+......
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~--~~~Ew~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI--QVQEWSNPTLPDFQKNDHKV 156 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh--HHHHHhhhhhhccccccccc
Confidence 56677899999999999999997532 133467999999999999999999987532 222232211100000
Q ss_pred ------------chhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-----hhhhhhc-ccCCCCCCCEEEEE
Q 047214 96 ------------GGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-----QLEGLIG-ELDQFGPGSRIVVT 157 (658)
Q Consensus 96 ------------~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----~~~~l~~-~l~~~~~~~~ilvt 157 (658)
...+.+..++...... .........+++.+|+||++.+.- .+..++. .....+.-.-|+++
T Consensus 157 ~~s~~~~~~~~~s~~~~F~~fl~~a~~~-~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~ 235 (637)
T TIGR00602 157 TLSLESCFSNFQSQIEVFSEFLLRATNK-LQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFII 235 (637)
T ss_pred chhhhhccccccchHHHHHHHHHHHHhh-hcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEe
Confidence 0011122211110000 000000013467899999995432 3445544 33222222233444
Q ss_pred ecchH---------HH------Hhh--cCCCceEEcCCCChHHHHHHHHHHhcCCCC-C-Cc---hhHHHHHHHHHHcCC
Q 047214 158 TRDKR---------VL------EKF--RGEKKIYRVNGLEFEEAFEHFCNFAFEENH-C-PE---DLNWHSQRVVEYADG 215 (658)
Q Consensus 158 tR~~~---------~~------~~~--~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~-~-~~---~~~~~~~~i~~~~~g 215 (658)
|-+.. .. ... ......|.+.+++..+..+.+.+.+..+.. . .+ ..++....|+..++|
T Consensus 236 TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~G 315 (637)
T TIGR00602 236 TESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSG 315 (637)
T ss_pred cCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCC
Confidence 42211 00 111 123457899999999988777776533211 0 00 123456777777777
Q ss_pred Ccc
Q 047214 216 NPL 218 (658)
Q Consensus 216 ~Pl 218 (658)
.--
T Consensus 316 DiR 318 (637)
T TIGR00602 316 DIR 318 (637)
T ss_pred hHH
Confidence 554
No 157
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.95 E-value=9.3e-05 Score=84.44 Aligned_cols=133 Identities=18% Similarity=0.205 Sum_probs=76.1
Q ss_pred CCCcccccchHhhHHHHhccc------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh-h
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG-K 99 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~ 99 (658)
...++|.+..++.+.+.+... .+....++.++|++|+|||.+|+.+++.+-+.....+-+. .++....... .
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d-mse~~~~~~~~~ 643 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITIN-MSEFQEAHTVSR 643 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe-HHHhhhhhhhcc
Confidence 356899999999999988521 1123457899999999999999999988543333323232 2222211111 1
Q ss_pred HhHHHhhhcCCCCchhHHHHhcCc-ceEEEEeCCCCch--hhhhhhcccCCCC-----------CCCEEEEEecc
Q 047214 100 ILSEKLEVAGANIPHFTKERVRRM-KVLIVLDDVNEVG--QLEGLIGELDQFG-----------PGSRIVVTTRD 160 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~--~~~~l~~~l~~~~-----------~~~~ilvttR~ 160 (658)
++....+..+.+....+.+.++.+ .-+|+||+++... .++.++..+.... .++-||+||..
T Consensus 644 l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNl 718 (852)
T TIGR03345 644 LKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNA 718 (852)
T ss_pred ccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCC
Confidence 111111111111133455555554 4799999997654 3555555543321 34556777653
No 158
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.95 E-value=4.9e-06 Score=80.62 Aligned_cols=208 Identities=18% Similarity=0.203 Sum_probs=130.9
Q ss_pred CCCCccEEEecCCCcc-----cccccccCCCCccEEeccCCC---cccccC---------CCcCCCccEEEeecCCccc-
Q 047214 443 KPENLVELNLHFSKVE-----QLWEGKKEAFKLKSINLSHCR---HFIDMS---------YPSAPNLETYLLDYTNFAC- 504 (658)
Q Consensus 443 ~l~~L~~L~L~~~~i~-----~l~~~~~~l~~L~~L~l~~~~---~~~~~~---------l~~l~~L~~L~l~~~~~~~- 504 (658)
....++.++|++|.+- .+-..+.+.++|+..++++-. ....+| +-..++|++|+++.|.++.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 5678899999999875 233445666788888777542 122222 4445677777777766632
Q ss_pred ----ccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEccccccccccc-----c
Q 047214 505 ----VPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPS-----S 575 (658)
Q Consensus 505 ----~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~-----~ 575 (658)
+...+.++..|++|.|.+| .+.......--..|..|. . .......+.|+.+...+|.+.+-+. .
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~--~----~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELA--V----NKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHH--H----HhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 2234566777777777766 222211100000111111 0 0111235678888888888775543 2
Q ss_pred ccCCCCCCEEecCCCccc----hhhhhhhcCCCCCcEEeccCCcC-------C-ccCCCCCCcccEEeccCCccccc---
Q 047214 576 IECLTDLEVLDLRDCKRL----KRISTRFCKLRSLVDLFLHGCLN-------L-QSLPALPLCLKSLDLRDCKMLQS--- 640 (658)
Q Consensus 576 ~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~-------l-~~l~~l~~~L~~L~l~~~~~l~~--- 640 (658)
+...+.|+.+.++.|.+. ..+...+.++++|++|+|..|.- + +.+|.+|. |+.|++++|..-..
T Consensus 181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~-L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH-LRELNLGDCLLENEGAI 259 (382)
T ss_pred HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch-heeecccccccccccHH
Confidence 677899999999988654 23456788999999999998651 1 23456887 99999999973321
Q ss_pred -----cCCCCCCccEEeccCCCC
Q 047214 641 -----LPELPSCLEALDLTSCNM 658 (658)
Q Consensus 641 -----i~~~~~~L~~L~l~~~~~ 658 (658)
+-...|+|+.|++.+|.+
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred HHHHHHhccCCCCceeccCcchh
Confidence 222577999999999864
No 159
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=8.5e-05 Score=72.68 Aligned_cols=184 Identities=18% Similarity=0.233 Sum_probs=103.1
Q ss_pred CCcccccchHhhHHHHhcccC---------C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccch
Q 047214 28 NGLVGLNSRIEQIKPFLCMDL---------S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGG 97 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~---------~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 97 (658)
...=|-++.+++|.+.++-.- + +.++=|.+||++|.|||-||++++++....|=.+ +..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrv-----vgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRV-----VGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEe-----ccH------
Confidence 445577888888888766221 1 4466788999999999999999999866554211 111
Q ss_pred hhHhHHHhhhcCCCCchhHHHHhc-CcceEEEEeCCCCch------------h-hh---hhhcccCCC--CCCCEEEEEe
Q 047214 98 GKILSEKLEVAGANIPHFTKERVR-RMKVLIVLDDVNEVG------------Q-LE---GLIGELDQF--GPGSRIVVTT 158 (658)
Q Consensus 98 ~~~l~~~l~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~------------~-~~---~l~~~l~~~--~~~~~ilvtt 158 (658)
+++...++.. ....+.+-+..+ ..+.+|++|.++... + -+ +|+..+... ..+.|||.+|
T Consensus 220 -ElVqKYiGEG-aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~AT 297 (406)
T COG1222 220 -ELVQKYIGEG-ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMAT 297 (406)
T ss_pred -HHHHHHhccc-hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEec
Confidence 2333333321 111222223333 458999999985421 1 12 233332222 2466888888
Q ss_pred cchHH-HHhh---cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc----chhHHhhccc
Q 047214 159 RDKRV-LEKF---RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP----LVPKVLGSSL 227 (658)
Q Consensus 159 R~~~~-~~~~---~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P----lai~~~a~~l 227 (658)
...++ ..++ ..-.+.|++..=+.+.-.+.|+-+...-....+-. .+.+++.|.|.- .|+..=|+..
T Consensus 298 NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd---~e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 298 NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD---LELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC---HHHHHHhcCCCchHHHHHHHHHHhHH
Confidence 66643 2222 23356788875555555567776664433322211 466777777754 3444444443
No 160
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.93 E-value=0.00022 Score=76.75 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=90.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhcccc--CceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEF--EGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~Llvl 129 (658)
...+.|+|..|+|||.|+..+++.+.+.+ ..++++. ..+... ++... +. ....+.+++.+++ .=+|||
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-aeef~~----el~~a-l~---~~~~~~f~~~y~~-~DLLlI 383 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-SEEFTN----EFINS-IR---DGKGDSFRRRYRE-MDILLV 383 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHHH----HHHHH-HH---hccHHHHHHHhhc-CCEEEE
Confidence 34589999999999999999999865432 2334444 211110 11111 11 1123345555544 357888
Q ss_pred eCCCCch---hhh-hhhcccCCC-CCCCEEEEEecchH---------HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCC
Q 047214 130 DDVNEVG---QLE-GLIGELDQF-GPGSRIVVTTRDKR---------VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEE 195 (658)
Q Consensus 130 Ddv~~~~---~~~-~l~~~l~~~-~~~~~ilvttR~~~---------~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~ 195 (658)
||+.... .|+ .+...+... ..+..||+||+... +.+.+ ...-++.+.+.+.+.-.+++.+.+...
T Consensus 384 DDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf-~~GLvv~I~~PD~EtR~aIL~kka~~r 462 (617)
T PRK14086 384 DDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRF-EWGLITDVQPPELETRIAILRKKAVQE 462 (617)
T ss_pred ehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhh-hcCceEEcCCCCHHHHHHHHHHHHHhc
Confidence 9996542 122 222222211 23566888887642 23333 456788999999999999998877443
Q ss_pred CCCCchhHHHHHHHHHHcCCCcchh
Q 047214 196 NHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 196 ~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
... --+++++-|++.+.+..-.+
T Consensus 463 ~l~--l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 463 QLN--APPEVLEFIASRISRNIREL 485 (617)
T ss_pred CCC--CCHHHHHHHHHhccCCHHHH
Confidence 322 22445667777666654333
No 161
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.93 E-value=8.6e-05 Score=80.31 Aligned_cols=177 Identities=18% Similarity=0.225 Sum_probs=96.0
Q ss_pred CCCCcccccchHhhHHHHhc---cc------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccc
Q 047214 26 SSNGLVGLNSRIEQIKPFLC---MD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETG 96 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~---~~------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 96 (658)
.-..++|.+...+++.+++. .. ....++-+.++|++|+|||++|+.++....-.| +. ++..
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-i~~~---- 122 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-ISGS---- 122 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-ccHH----
Confidence 33568888877766665443 10 013345688999999999999999998754332 11 1110
Q ss_pred hhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch------------h----hhhhhcccCC--CCCCCEEEEEe
Q 047214 97 GGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG------------Q----LEGLIGELDQ--FGPGSRIVVTT 158 (658)
Q Consensus 97 ~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------------~----~~~l~~~l~~--~~~~~~ilvtt 158 (658)
+......+.......+.+.......+.+|++|+++... . +..++..+.. ...+..||.||
T Consensus 123 --~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aT 200 (495)
T TIGR01241 123 --DFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAAT 200 (495)
T ss_pred --HHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEec
Confidence 01111111100001223333444567999999995531 1 1222222211 12344566666
Q ss_pred cchH-HHHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 159 RDKR-VLEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 159 R~~~-~~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
..+. +...+. .....+.+...+.++-.+++..+........ ......+++.+.|.-
T Consensus 201 n~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~s 260 (495)
T TIGR01241 201 NRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFS 260 (495)
T ss_pred CChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCC
Confidence 6543 222221 2356888998899888898887764322211 112467888887743
No 162
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.90 E-value=0.00014 Score=70.72 Aligned_cols=196 Identities=12% Similarity=0.119 Sum_probs=105.8
Q ss_pred CCCCcccccchH---hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCc-----eEEEeccccccccch
Q 047214 26 SSNGLVGLNSRI---EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEG-----RCFLSDIRKNSETGG 97 (658)
Q Consensus 26 ~~~~~vGR~~~~---~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~-----~~~~~~~~~~~~~~~ 97 (658)
..+.++|..... +.+..++......+.+-+.|+|.+|.|||++++++.+.....++. -+++...+...+...
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 456788866544 444445554433566789999999999999999999984433321 123332444444443
Q ss_pred h-hHhHHHhhhcCCCC------chhHHHHhcC-cceEEEEeCCCCch-----hhhhhhcccCCCCC---CCEEEEEecch
Q 047214 98 G-KILSEKLEVAGANI------PHFTKERVRR-MKVLIVLDDVNEVG-----QLEGLIGELDQFGP---GSRIVVTTRDK 161 (658)
Q Consensus 98 ~-~~l~~~l~~~~~~~------~~~l~~~l~~-~~~LlvlDdv~~~~-----~~~~l~~~l~~~~~---~~~ilvttR~~ 161 (658)
+ ..+-..++...... .......++. +--+||+|++++.- .-+.++..+...++ -.-|.+-|+.-
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 3 33333333322111 2233344544 45799999997742 23333333322222 22334445433
Q ss_pred HHH----HhhcCCCceEEcCCCChHHHH-HHHHHH---hcCCCCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 162 RVL----EKFRGEKKIYRVNGLEFEEAF-EHFCNF---AFEENHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 162 ~~~----~~~~~~~~~~~l~~L~~~~~~-~l~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
.-+ ..+.+....+.++....++-. .|+... ..-.....-..++.+..|.+.++|+.--+.
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 211 112245667888887766544 444322 111122223446678999999999875444
No 163
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.88 E-value=0.00014 Score=82.49 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=69.3
Q ss_pred CCCcccccchHhhHHHHhccc------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh-h
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG-K 99 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~ 99 (658)
...++|.+..++.+.+.+... .+....++.++|++|+|||++|+.+++.... ..+.+. .++....... .
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d-~se~~~~~~~~~ 528 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV---HLERFD-MSEYMEKHTVSR 528 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEe-CchhhhcccHHH
Confidence 456899999999999887731 1122457889999999999999999998632 233333 2222221111 1
Q ss_pred HhHHHhhhcCCCCchhHHHHhcCcc-eEEEEeCCCCch--hhhhhhcccC
Q 047214 100 ILSEKLEVAGANIPHFTKERVRRMK-VLIVLDDVNEVG--QLEGLIGELD 146 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l~~~~-~LlvlDdv~~~~--~~~~l~~~l~ 146 (658)
++....+..+.+....+.+.++.++ -+++||+++... .+..++..+.
T Consensus 529 lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 529 LIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred HhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 2211111112222345666666554 599999998765 3555555543
No 164
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.87 E-value=0.00019 Score=73.31 Aligned_cols=134 Identities=19% Similarity=0.154 Sum_probs=84.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~Llvl 129 (658)
.....+.|+|..|.|||.|++++++...+.......+....+.+... .+.. +. .+..+.+++.. .-=++++
T Consensus 111 ~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~---~v~a-~~---~~~~~~Fk~~y--~~dlllI 181 (408)
T COG0593 111 GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTND---FVKA-LR---DNEMEKFKEKY--SLDLLLI 181 (408)
T ss_pred CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHH---HHHH-HH---hhhHHHHHHhh--ccCeeee
Confidence 35789999999999999999999999777665333333122222111 1111 11 12356677766 4458889
Q ss_pred eCCCCchh---h-hh---hhcccCCCCCCCEEEEEecchH---------HHHhhcCCCceEEcCCCChHHHHHHHHHHhc
Q 047214 130 DDVNEVGQ---L-EG---LIGELDQFGPGSRIVVTTRDKR---------VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAF 193 (658)
Q Consensus 130 Ddv~~~~~---~-~~---l~~~l~~~~~~~~ilvttR~~~---------~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~ 193 (658)
||++-... | +. +...+. ..|..||+|++..+ +.+.+ ..+.++.+.+.+++...+.+.+.+.
T Consensus 182 DDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~~~~rL~SR~-~~Gl~~~I~~Pd~e~r~aiL~kka~ 258 (408)
T COG0593 182 DDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNGLEDRLRSRL-EWGLVVEIEPPDDETRLAILRKKAE 258 (408)
T ss_pred chHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhccccHHHHHHH-hceeEEeeCCCCHHHHHHHHHHHHH
Confidence 99865332 1 12 222222 23448999986553 33334 5567999999999999999988654
Q ss_pred CC
Q 047214 194 EE 195 (658)
Q Consensus 194 ~~ 195 (658)
..
T Consensus 259 ~~ 260 (408)
T COG0593 259 DR 260 (408)
T ss_pred hc
Confidence 33
No 165
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.84 E-value=0.0002 Score=82.35 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=77.6
Q ss_pred CCCcccccchHhhHHHHhccc------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
...++|.+..++.+.+.+... .+....++.+.|++|+|||++|+.+++.....-...+.+. .+...... .
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~~---~ 639 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYMEKH---S 639 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhcccc---h
Confidence 356999999999999988742 1122467889999999999999999998544333333333 33222211 1
Q ss_pred hHHHhhhc----CCCCchhHHHHhcCcc-eEEEEeCCCCch--hhhhhhcccCCC-----------CCCCEEEEEecc
Q 047214 101 LSEKLEVA----GANIPHFTKERVRRMK-VLIVLDDVNEVG--QLEGLIGELDQF-----------GPGSRIVVTTRD 160 (658)
Q Consensus 101 l~~~l~~~----~~~~~~~l~~~l~~~~-~LlvlDdv~~~~--~~~~l~~~l~~~-----------~~~~~ilvttR~ 160 (658)
....++.. +.+....+.+.++.++ .+|+||+++... .+..++..+... -.++-||+||..
T Consensus 640 ~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 640 VARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred HHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 11122211 1111334555555544 499999998765 366666655332 123347777765
No 166
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00074 Score=67.76 Aligned_cols=172 Identities=13% Similarity=0.112 Sum_probs=97.1
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh-ccc-c---CceEEEeccc--cccccchhhHhHHHhh-hcC
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSE-F---EGRCFLSDIR--KNSETGGGKILSEKLE-VAG 109 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~-f---~~~~~~~~~~--~~~~~~~~~~l~~~l~-~~~ 109 (658)
+.+.+.+..+ .-.....++|+.|+||+++|..+++.+ ++. . .+...-. +. .......+..+...-+ .-+
T Consensus 12 ~~l~~~~~~~--rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~s-C~~~~~g~HPD~~~i~p~~~~~I~ 88 (325)
T PRK06871 12 QQITQAFQQG--LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHS-CHLFQAGNHPDFHILEPIDNKDIG 88 (325)
T ss_pred HHHHHHHHcC--CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHhcCCCCCEEEEccccCCCCC
Confidence 4555555542 234678899999999999999999983 221 1 1100000 00 0000000000000000 000
Q ss_pred CCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHHhhcCCCceEEcCCCCh
Q 047214 110 ANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLEKFRGEKKIYRVNGLEF 181 (658)
Q Consensus 110 ~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~~~~~~~~~~~l~~L~~ 181 (658)
.+..+.+.+.+ .++.-++|+|+++... ....++..+-+-..+..+|++|.+. .+.....+.+..+.+.+++.
T Consensus 89 id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~ 168 (325)
T PRK06871 89 VDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEE 168 (325)
T ss_pred HHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCH
Confidence 00022233333 2456789999998775 3566666665545566666666655 45555556788999999999
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcch
Q 047214 182 EEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLV 219 (658)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 219 (658)
++..+.+.+.... + ...+...++.++|.|..
T Consensus 169 ~~~~~~L~~~~~~-----~--~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 169 QQALDWLQAQSSA-----E--ISEILTALRINYGRPLL 199 (325)
T ss_pred HHHHHHHHHHhcc-----C--hHHHHHHHHHcCCCHHH
Confidence 9999988776411 1 11256678889999963
No 167
>PRK08116 hypothetical protein; Validated
Probab=97.81 E-value=0.00011 Score=72.34 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=57.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCC
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDV 132 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv 132 (658)
..+.++|.+|+|||.||.++++.+.+....++++. ..+. +..+..............+.+.+.+-. ||||||+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-~~~l-----l~~i~~~~~~~~~~~~~~~~~~l~~~d-lLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-FPQL-----LNRIKSTYKSSGKEDENEIIRSLVNAD-LLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHH-----HHHHHHHHhccccccHHHHHHHhcCCC-EEEEecc
Confidence 45889999999999999999999765544455554 2111 122222221111111334555555544 8999999
Q ss_pred --CCchhhhh--hhcccCCC-CCCCEEEEEecch
Q 047214 133 --NEVGQLEG--LIGELDQF-GPGSRIVVTTRDK 161 (658)
Q Consensus 133 --~~~~~~~~--l~~~l~~~-~~~~~ilvttR~~ 161 (658)
....+|.. +...+... ..+..+|+||...
T Consensus 188 g~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 33334432 33222211 2456688888754
No 168
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00054 Score=68.61 Aligned_cols=166 Identities=15% Similarity=0.146 Sum_probs=98.3
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh-ccc-c----------------CceEEEeccccc-cc---
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSE-F----------------EGRCFLSDIRKN-SE--- 94 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~-f----------------~~~~~~~~~~~~-~~--- 94 (658)
.+.+.+.+..+ .-...+.++|+.|+||+++|..+++.+ ++. . +...|+....+. ..
T Consensus 13 ~~~l~~~~~~~--rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~ 90 (319)
T PRK08769 13 YDQTVAALDAG--RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLR 90 (319)
T ss_pred HHHHHHHHHcC--CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccccc
Confidence 34555555442 234578899999999999999999873 221 1 111121100000 00
Q ss_pred -cchhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHH
Q 047214 95 -TGGGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLE 165 (658)
Q Consensus 95 -~~~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~ 165 (658)
.-.++. .+.+.+.+ .++.-++|+|+++... .-..++..+-+-..++.+|++|.+. .+..
T Consensus 91 ~~I~idq------------IR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 91 TEIVIEQ------------VREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred ccccHHH------------HHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 000011 22222222 2456799999998765 3445555554434566666666654 4555
Q ss_pred hhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhh
Q 047214 166 KFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLG 224 (658)
Q Consensus 166 ~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a 224 (658)
...+.+..+.+.+++.+++.+.+.... .+ +..+..++..++|.|+....++
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~~----~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQG----VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHcC----CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 555778899999999999998886531 11 2225678999999998655444
No 169
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.80 E-value=0.00012 Score=68.96 Aligned_cols=120 Identities=18% Similarity=0.260 Sum_probs=70.2
Q ss_pred CCCCCCCcccccchHhhHHHHhcc-cCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHh
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCM-DLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~-~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 101 (658)
.++.-..++|.|.+.+.|.+-... -.+.....+.++|..|+|||++++++...+...- ..+..+.... +..
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LRlIev~k~~----L~~- 93 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG---LRLIEVSKED----LGD- 93 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ceEEEECHHH----hcc-
Confidence 455667899999998887763321 0114466788999999999999999999866543 2222122111 111
Q ss_pred HHHhhhcCCCCchhHHHHhc--CcceEEEEeCCC---CchhhhhhhcccC---CCCCCCEEEEEecch
Q 047214 102 SEKLEVAGANIPHFTKERVR--RMKVLIVLDDVN---EVGQLEGLIGELD---QFGPGSRIVVTTRDK 161 (658)
Q Consensus 102 ~~~l~~~~~~~~~~l~~~l~--~~~~LlvlDdv~---~~~~~~~l~~~l~---~~~~~~~ilvttR~~ 161 (658)
...+.+.++ ..+|+|++||+- ....+..+...+. ...+..-+|.+|.|+
T Consensus 94 -----------l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 94 -----------LPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred -----------HHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 223333333 358999999972 2334555544442 222444444444443
No 170
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.80 E-value=0.00014 Score=65.59 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=76.7
Q ss_pred cccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cc-------------------cCceEEEecccc
Q 047214 32 GLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SE-------------------FEGRCFLSDIRK 91 (658)
Q Consensus 32 GR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~-------------------f~~~~~~~~~~~ 91 (658)
|.++..+.+.+.+... .-+..+.++|+.|+||+++|..+++.+- .. .....|+. -..
T Consensus 1 gq~~~~~~L~~~~~~~--~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~ 77 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG--RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIK-PDK 77 (162)
T ss_dssp S-HHHHHHHHHHHHCT--C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEE-TTT
T ss_pred CcHHHHHHHHHHHHcC--CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEe-ccc
Confidence 4566677777777653 2345689999999999999999999832 11 22333332 111
Q ss_pred ccccchhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecchH-H
Q 047214 92 NSETGGGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDKR-V 163 (658)
Q Consensus 92 ~~~~~~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~~-~ 163 (658)
....-.++.+. .+.+.+ .++.-++|+|+++... ....++..+-+-..++.+|++|++.. +
T Consensus 78 ~~~~i~i~~ir------------~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 78 KKKSIKIDQIR------------EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKI 145 (162)
T ss_dssp SSSSBSHHHHH------------HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS
T ss_pred ccchhhHHHHH------------HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHC
Confidence 00001111122 222222 2456799999998765 46677776655566888888887764 4
Q ss_pred HHhhcCCCceEEcCCCC
Q 047214 164 LEKFRGEKKIYRVNGLE 180 (658)
Q Consensus 164 ~~~~~~~~~~~~l~~L~ 180 (658)
......++..+.+.++|
T Consensus 146 l~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 146 LPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -HHHHTTSEEEEE----
T ss_pred hHHHHhhceEEecCCCC
Confidence 55555777888888764
No 171
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.0007 Score=68.91 Aligned_cols=145 Identities=13% Similarity=0.182 Sum_probs=89.7
Q ss_pred ccc-ccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh-ccc--------------------cCceEEEe
Q 047214 30 LVG-LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSE--------------------FEGRCFLS 87 (658)
Q Consensus 30 ~vG-R~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~--------------------f~~~~~~~ 87 (658)
++| .+..++.+.+.+... .-.....++|+.|+|||++|..+++.+ ... ++...++.
T Consensus 7 i~~~q~~~~~~L~~~~~~~--~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKN--RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHhhHHHHHHHHHHHHHcC--CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 456 666677777777642 235667899999999999999999983 221 11111111
Q ss_pred ccccccccchhhHhHHHhhhcCCCCchhHHHH-----hcCcceEEEEeCCCCchh--hhhhhcccCCCCCCCEEEEEecc
Q 047214 88 DIRKNSETGGGKILSEKLEVAGANIPHFTKER-----VRRMKVLIVLDDVNEVGQ--LEGLIGELDQFGPGSRIVVTTRD 160 (658)
Q Consensus 88 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~ilvttR~ 160 (658)
. + .....++.+ +.+.+. ..+.+-++|+|+++.... ...++..+-+-..++.+|++|.+
T Consensus 85 -~-~-~~~i~id~i------------r~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~ 149 (329)
T PRK08058 85 -P-D-GQSIKKDQI------------RYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTEN 149 (329)
T ss_pred -c-c-cccCCHHHH------------HHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCC
Confidence 0 0 000001111 122222 234567899999977653 55666666554556667767655
Q ss_pred h-HHHHhhcCCCceEEcCCCChHHHHHHHHHH
Q 047214 161 K-RVLEKFRGEKKIYRVNGLEFEEAFEHFCNF 191 (658)
Q Consensus 161 ~-~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~ 191 (658)
+ .+.....+.+..+.+.+++.++..+.+.+.
T Consensus 150 ~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 150 KHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 4 344445567889999999999998888654
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.76 E-value=0.0002 Score=62.33 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhc
Q 047214 55 VGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
|.|+|++|+|||++|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 173
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.76 E-value=0.00026 Score=66.01 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=103.1
Q ss_pred CCCCCcccccchHh---hHHHHhcccC---CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh
Q 047214 25 DSSNGLVGLNSRIE---QIKPFLCMDL---SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG 98 (658)
Q Consensus 25 ~~~~~~vGR~~~~~---~l~~~l~~~~---~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 98 (658)
+.-+..+|.++... -|.+.|.+.. ..-++.|..+|++|.|||.+|+++++..+-.|- .+ ...
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l---~v---------kat 185 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL---LV---------KAT 185 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE---Ee---------chH
Confidence 34567889887664 4566666431 145788999999999999999999998664431 11 111
Q ss_pred hHhHHHhhhcCCCCchhHHHHh----cCcceEEEEeCCCCch--------------hhhhhhcccCC--CCCCCEEEEEe
Q 047214 99 KILSEKLEVAGANIPHFTKERV----RRMKVLIVLDDVNEVG--------------QLEGLIGELDQ--FGPGSRIVVTT 158 (658)
Q Consensus 99 ~~l~~~l~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~~--------------~~~~l~~~l~~--~~~~~~ilvtt 158 (658)
+++.+..+ +.++++++.. +.-++++.+|.++... ....++..+.. ...|...|..|
T Consensus 186 ~liGehVG----dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaT 261 (368)
T COG1223 186 ELIGEHVG----DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAAT 261 (368)
T ss_pred HHHHHHhh----hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeec
Confidence 34444333 2234444333 3458999999986532 24445555432 23455556667
Q ss_pred cchHHHHh-hc-CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 159 RDKRVLEK-FR-GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 159 R~~~~~~~-~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
.++..... .. .....|+..--+++|-.+++..++..-..+.+ ...+.++++++|.-
T Consensus 262 N~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~S 319 (368)
T COG1223 262 NRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGMS 319 (368)
T ss_pred CChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCCC
Confidence 66654332 21 22346677766888888888877633221111 12566777777753
No 174
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.75 E-value=0.00079 Score=68.27 Aligned_cols=162 Identities=13% Similarity=0.106 Sum_probs=97.8
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh-ccc-c-------------------CceEEEecccccc-c
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSE-F-------------------EGRCFLSDIRKNS-E 94 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~-f-------------------~~~~~~~~~~~~~-~ 94 (658)
-+++.+.+..+ .-.....++|+.|+||+++|.++++.+ +.. - +...++. ++.. .
T Consensus 11 ~~~l~~~~~~~--rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~--p~~~~~ 86 (334)
T PRK07993 11 YEQLVGSYQAG--RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT--PEKGKS 86 (334)
T ss_pred HHHHHHHHHcC--CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--cccccc
Confidence 34556655542 335678899999999999999999983 211 1 1111111 0000 0
Q ss_pred cchhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHHh
Q 047214 95 TGGGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLEK 166 (658)
Q Consensus 95 ~~~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~~ 166 (658)
.-.++. .+.+.+.+ .++.-++|+|+++.+. ....++..+-+-..+..+|++|.+. .+...
T Consensus 87 ~I~idq------------iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 87 SLGVDA------------VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred cCCHHH------------HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHH
Confidence 000111 22233333 2557799999998765 3556666655444566666666554 45555
Q ss_pred hcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 167 FRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 167 ~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
..+.+..+.+.+++.+++.+.+.... + . + .+.+..+++.++|.|....
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~-~--~--~--~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREV-T--M--S--QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHcc-C--C--C--HHHHHHHHHHcCCCHHHHH
Confidence 55677889999999999998876542 1 1 1 2236778999999996433
No 175
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00016 Score=75.37 Aligned_cols=175 Identities=15% Similarity=0.166 Sum_probs=102.0
Q ss_pred CCcccccchHhhHHHHhcccC--------C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh
Q 047214 28 NGLVGLNSRIEQIKPFLCMDL--------S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG 98 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~--------~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 98 (658)
..+=|.++.+.++.+++..-. + ..++=|.+||++|+|||.||.+++....-.|-.+ . .-
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~i------s------Ap 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSI------S------AP 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEee------c------ch
Confidence 567789999999888765211 1 3456788999999999999999999865443111 0 01
Q ss_pred hHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-------------hhhhhhcccCC---CC-CCCEEEE---Ee
Q 047214 99 KILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-------------QLEGLIGELDQ---FG-PGSRIVV---TT 158 (658)
Q Consensus 99 ~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~l~~---~~-~~~~ilv---tt 158 (658)
+++....+.......+.+.+....-++++++|+++... -+.+|+..... .. .|-.|+| |+
T Consensus 258 eivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn 337 (802)
T KOG0733|consen 258 EIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN 337 (802)
T ss_pred hhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC
Confidence 23333333333333455666667789999999996542 12233333221 11 1333433 34
Q ss_pred cchHHHHhh---cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 159 RDKRVLEKF---RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 159 R~~~~~~~~---~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
|...+...+ ....+.|-+..=+..+-.+.+...+.+-..+. .+ ..++|++.+-|.-
T Consensus 338 RPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~--d~~qlA~lTPGfV 396 (802)
T KOG0733|consen 338 RPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DF--DFKQLAKLTPGFV 396 (802)
T ss_pred CCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-Cc--CHHHHHhcCCCcc
Confidence 544444443 23356778877676666667766654333222 22 1477888887754
No 176
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.75 E-value=0.0005 Score=65.29 Aligned_cols=261 Identities=19% Similarity=0.189 Sum_probs=143.4
Q ss_pred CCCCCCCcccccchHhhHHHHhccc--CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~--~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
.|..-.+|+|.++..+++.=++... .+...-.+.++|++|.||||||.-+++.....+.. . +...-.+.-++
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~----t--sGp~leK~gDl 94 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKI----T--SGPALEKPGDL 94 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEe----c--ccccccChhhH
Confidence 4667789999999988888887742 22445689999999999999999999986543321 1 11010010011
Q ss_pred hHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-hhhhhhccc---------CCCCCCCE-----------EEEEec
Q 047214 101 LSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-QLEGLIGEL---------DQFGPGSR-----------IVVTTR 159 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-~~~~l~~~l---------~~~~~~~~-----------ilvttR 159 (658)
.. + ..-|+ ..=++++|+++... ..++++... ...++++| |=.|||
T Consensus 95 aa-i------------Lt~Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr 160 (332)
T COG2255 95 AA-I------------LTNLE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTR 160 (332)
T ss_pred HH-H------------HhcCC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccc
Confidence 11 1 11111 23356678876544 222222211 11233333 335888
Q ss_pred chHHHHhhc-CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhcccccccHHHHHHH
Q 047214 160 DKRVLEKFR-GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCLKRKSHWENL 238 (658)
Q Consensus 160 ~~~~~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~ 238 (658)
.-.+..-+. ...-+.+++-.+.+|-.+...+.+..-. .+-.++.+.+|++...|-|-...-+.+.++. +..+
T Consensus 161 ~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~--i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD-----fa~V 233 (332)
T COG2255 161 AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG--IEIDEEAALEIARRSRGTPRIANRLLRRVRD-----FAQV 233 (332)
T ss_pred cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC--CCCChHHHHHHHHhccCCcHHHHHHHHHHHH-----HHHH
Confidence 664433331 2355788899999999988877653222 2333456899999999999643333333221 1111
Q ss_pred HHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeeecC--CCCCHHHHHHHhccccc---cchH-HhhhccCceee
Q 047214 239 LHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIACFF--EGEDKDFVARILDDSES---DGLD-VLIDKSLISIS 311 (658)
Q Consensus 239 ~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp--~~~~~~~l~~~~~~~~~---~~l~-~L~~~~ll~~~ 311 (658)
... ......-.+.....+..--..|+.-.++++..+.-.. ++..++.++..+.++.+ +.++ -|+..||++..
T Consensus 234 ~~~-~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~RT 311 (332)
T COG2255 234 KGD-GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQRT 311 (332)
T ss_pred hcC-CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhhC
Confidence 000 0000000011233344444455555566665554433 44777888888777332 2232 38888888876
No 177
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.74 E-value=3.7e-05 Score=51.93 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=17.4
Q ss_pred CccEEEecCCCcccccccccCCCCccEEeccCC
Q 047214 446 NLVELNLHFSKVEQLWEGKKEAFKLKSINLSHC 478 (658)
Q Consensus 446 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~ 478 (658)
+|++|++++|+|+.+|..+++|++|+.|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555555555555555555555555555555
No 178
>PRK08181 transposase; Validated
Probab=97.74 E-value=0.00011 Score=71.80 Aligned_cols=100 Identities=19% Similarity=0.055 Sum_probs=55.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeC
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDD 131 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDd 131 (658)
...+.++|++|+|||.||..+++.+.+....++|+. ..+ .+..+.... .........+.+. +.=||||||
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~-----L~~~l~~a~---~~~~~~~~l~~l~-~~dLLIIDD 175 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTD-----LVQKLQVAR---RELQLESAIAKLD-KFDLLILDD 175 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHH-----HHHHHHHHH---hCCcHHHHHHHHh-cCCEEEEec
Confidence 345899999999999999999998665554555554 111 112221111 1111222333332 345999999
Q ss_pred CCCch--h-h-hhhhcccCCCCCCCEEEEEecch
Q 047214 132 VNEVG--Q-L-EGLIGELDQFGPGSRIVVTTRDK 161 (658)
Q Consensus 132 v~~~~--~-~-~~l~~~l~~~~~~~~ilvttR~~ 161 (658)
+.... . + +.+...+.....+..+|+||..+
T Consensus 176 lg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 176 LAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred cccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 95432 1 1 22333332222234688888765
No 179
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.74 E-value=0.0002 Score=63.17 Aligned_cols=85 Identities=20% Similarity=0.204 Sum_probs=47.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCC-----chhHHHHhcCc-ce
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANI-----PHFTKERVRRM-KV 125 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~l~~~l~~~-~~ 125 (658)
.+.+.|+|++|+||||+++.++.........++++. ........................ .+...+..+.. ..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID-GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC-CEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 357899999999999999999998766543344444 222211111110000000000000 33334444443 49
Q ss_pred EEEEeCCCCchh
Q 047214 126 LIVLDDVNEVGQ 137 (658)
Q Consensus 126 LlvlDdv~~~~~ 137 (658)
++++|++.....
T Consensus 81 viiiDei~~~~~ 92 (148)
T smart00382 81 VLILDEITSLLD 92 (148)
T ss_pred EEEEECCcccCC
Confidence 999999987654
No 180
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.73 E-value=0.00012 Score=76.93 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=117.2
Q ss_pred CCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh-ccccCceEEEecc---ccccccchhh
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSEFEGRCFLSDI---RKNSETGGGK 99 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~f~~~~~~~~~---~~~~~~~~~~ 99 (658)
|..=.++||.+...+.|...+.... -...-...|+-|+||||+|+-+++.+ +..-...-....+ ........++
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r--i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~D 89 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR--IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLID 89 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc--chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCccc
Confidence 3345678999999999999998642 23455689999999999999999982 2211100000000 0000000011
Q ss_pred HhH-HHhhhcCCCCchhHHHHhc-----CcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHHhhcCC
Q 047214 100 ILS-EKLEVAGANIPHFTKERVR-----RMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLEKFRGE 170 (658)
Q Consensus 100 ~l~-~~l~~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~~~~~~ 170 (658)
++. +.....+.+..+.+.+... ++.-+.|+|+|+... .|..++..+-.-......|+.|.+. .+.....++
T Consensus 90 viEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSR 169 (515)
T COG2812 90 VIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSR 169 (515)
T ss_pred chhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhc
Confidence 111 1222222222455555543 456799999998876 5888888776545566656555554 444444477
Q ss_pred CceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 171 KKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 171 ~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
++.+.+..++.++-...+...+..+.. ...++....|+++.+|-.
T Consensus 170 cq~f~fkri~~~~I~~~L~~i~~~E~I--~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 170 CQRFDFKRLDLEEIAKHLAAILDKEGI--NIEEDALSLIARAAEGSL 214 (515)
T ss_pred cccccccCCCHHHHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCCCh
Confidence 899999999999999999888755433 233445677777777744
No 181
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.71 E-value=0.00028 Score=80.19 Aligned_cols=176 Identities=16% Similarity=0.174 Sum_probs=97.0
Q ss_pred CCCcccccchHhhHHHHhccc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccc
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETG 96 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~----------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 96 (658)
-..+.|.+...+++.+.+.-. .-..++-+.++|++|+|||++|++++......| +.+. .+
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~~------ 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-GP------ 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-hH------
Confidence 345678777777777655410 002345688999999999999999999865433 1111 11
Q ss_pred hhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--------------hhhhhhcccCCC--CCCCEEEEEecc
Q 047214 97 GGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--------------QLEGLIGELDQF--GPGSRIVVTTRD 160 (658)
Q Consensus 97 ~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--------------~~~~l~~~l~~~--~~~~~ilvttR~ 160 (658)
+++....+.......+.+...-+..+.+|++|+++... ....++..+... ..+.-||.||..
T Consensus 522 --~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~ 599 (733)
T TIGR01243 522 --EILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNR 599 (733)
T ss_pred --HHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCC
Confidence 11111111111111222333334567999999985431 123344433321 234456667755
Q ss_pred hHH-HHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 161 KRV-LEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 161 ~~~-~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
+.. ..... .....+.+...+.++-.++|+.+..+....... ....+++.+.|.-
T Consensus 600 ~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~---~l~~la~~t~g~s 657 (733)
T TIGR01243 600 PDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV---DLEELAEMTEGYT 657 (733)
T ss_pred hhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC---CHHHHHHHcCCCC
Confidence 542 22221 235688888889988889987665332211111 1466777777754
No 182
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.70 E-value=0.00035 Score=80.10 Aligned_cols=115 Identities=20% Similarity=0.249 Sum_probs=68.1
Q ss_pred CCCcccccchHhhHHHHhccc------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
...++|.+..++.+...+... .+....++.++|++|+|||++|+.+++.....-...+.+. .+..... ..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~~---~~ 642 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFMEK---HS 642 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhhh---hh
Confidence 456899999999999988632 1112357889999999999999999987543333334333 2222111 11
Q ss_pred hHHHhhhcC----CCCchhHHHHhcCcc-eEEEEeCCCCch--hhhhhhccc
Q 047214 101 LSEKLEVAG----ANIPHFTKERVRRMK-VLIVLDDVNEVG--QLEGLIGEL 145 (658)
Q Consensus 101 l~~~l~~~~----~~~~~~l~~~l~~~~-~LlvlDdv~~~~--~~~~l~~~l 145 (658)
....++... .+....+.+.++..+ -+|+||+++... .+..++..+
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 222222111 111233455554443 699999998554 455565554
No 183
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.69 E-value=0.00047 Score=71.85 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=39.5
Q ss_pred CCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
...++||++.++.+...+..+ ..|.|.|++|+|||++|+.++.....
T Consensus 19 ~~~i~gre~vI~lll~aalag-----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccC-----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 345999999999999988642 35889999999999999999997543
No 184
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00011 Score=80.40 Aligned_cols=117 Identities=20% Similarity=0.269 Sum_probs=78.5
Q ss_pred CCCcccccchHhhHHHHhccc------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
...++|.+..++.+.+.+... .+...++....|+.|||||.||++++..+-+.=+..+-+. .++.... ..
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~Ek---Hs 565 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYMEK---HS 565 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHHHH---HH
Confidence 356999999999999988732 2244578889999999999999999998543223344443 3333222 23
Q ss_pred hHHHhhhc----CCCCchhHHHHhcCcce-EEEEeCCCCch--hhhhhhcccCC
Q 047214 101 LSEKLEVA----GANIPHFTKERVRRMKV-LIVLDDVNEVG--QLEGLIGELDQ 147 (658)
Q Consensus 101 l~~~l~~~----~~~~~~~l~~~l~~~~~-LlvlDdv~~~~--~~~~l~~~l~~ 147 (658)
+..+++.. +-+....+-+.++.++| ++.||+++... ..+-+++.+..
T Consensus 566 VSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 566 VSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 33333333 22336788899999987 88999998764 35566665544
No 185
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.67 E-value=0.00012 Score=70.64 Aligned_cols=41 Identities=27% Similarity=0.067 Sum_probs=33.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc-cccCceEEEecccc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS-SEFEGRCFLSDIRK 91 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~~~~~~~~~~~ 91 (658)
..+.++|.|++|+|||||++.+++... ++|+..+|+..+.+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e 56 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE 56 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC
Confidence 456788999999999999999999854 36898889874444
No 186
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.67 E-value=0.00057 Score=76.60 Aligned_cols=112 Identities=16% Similarity=0.216 Sum_probs=69.2
Q ss_pred CCCcccccchHhhHHHHhccc------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
...++|.++.++.|.+.+... .+.....+.++|++|+|||++|+.+++..... .+.+. .++..... .
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~---~i~id-~se~~~~~---~ 529 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRFD-MSEYMERH---T 529 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCC---cEEee-chhhcccc---c
Confidence 456899999999999988731 11234578999999999999999999886422 22232 22222111 1
Q ss_pred hHHHhhhc----CCCCchhHHHHhcCcc-eEEEEeCCCCch--hhhhhhccc
Q 047214 101 LSEKLEVA----GANIPHFTKERVRRMK-VLIVLDDVNEVG--QLEGLIGEL 145 (658)
Q Consensus 101 l~~~l~~~----~~~~~~~l~~~l~~~~-~LlvlDdv~~~~--~~~~l~~~l 145 (658)
+...++.. +.+....+.+.++.++ .+++||+++... .++.++..+
T Consensus 530 ~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred HHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 23333321 1112345556665554 699999998765 355565544
No 187
>PRK10536 hypothetical protein; Provisional
Probab=97.66 E-value=0.00029 Score=67.15 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=73.5
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh-h-ccccCceEEEeccccccccch-----h--
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ-F-SSEFEGRCFLSDIRKNSETGG-----G-- 98 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~-~-~~~f~~~~~~~~~~~~~~~~~-----~-- 98 (658)
..+.+|......+..++.. ...+.+.|++|+|||+||.+++.+ + .+.|+.++.....-+..+... +
T Consensus 55 ~~i~p~n~~Q~~~l~al~~-----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~e 129 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES-----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAE 129 (262)
T ss_pred ccccCCCHHHHHHHHHHhc-----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHH
Confidence 4567788888888888864 348999999999999999999986 3 344554444331111111000 0
Q ss_pred ----------hHhHHHhhhcCCCCchhH------------HHHhcCc---ceEEEEeCCCCchhhhhhhcccCCCCCCCE
Q 047214 99 ----------KILSEKLEVAGANIPHFT------------KERVRRM---KVLIVLDDVNEVGQLEGLIGELDQFGPGSR 153 (658)
Q Consensus 99 ----------~~l~~~l~~~~~~~~~~l------------~~~l~~~---~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ 153 (658)
+.+...++. +..+.+ ..++++. .-++|+|++.+... ..+...+...+.+++
T Consensus 130 K~~p~~~pi~D~L~~~~~~---~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~-~~~k~~ltR~g~~sk 205 (262)
T PRK10536 130 KFAPYFRPVYDVLVRRLGA---SFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTA-AQMKMFLTRLGENVT 205 (262)
T ss_pred HHHHHHHHHHHHHHHHhCh---HHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCH-HHHHHHHhhcCCCCE
Confidence 222222211 001111 1234454 45999999988764 333333444568999
Q ss_pred EEEEecc
Q 047214 154 IVVTTRD 160 (658)
Q Consensus 154 ilvttR~ 160 (658)
+|++--.
T Consensus 206 ~v~~GD~ 212 (262)
T PRK10536 206 VIVNGDI 212 (262)
T ss_pred EEEeCCh
Confidence 9988653
No 188
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.64 E-value=0.0003 Score=80.01 Aligned_cols=177 Identities=18% Similarity=0.212 Sum_probs=96.5
Q ss_pred CCCcccccchHhhHHHHhccc---------CC-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccc
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD---------LS-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETG 96 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~---------~~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 96 (658)
-+.+.|.++.++++.+++... .+ ...+.+.++|++|+|||++|+.+++.....| +.+. ...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~----- 247 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPE----- 247 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHH-----
Confidence 345889999999998877421 00 2345688999999999999999998865433 2222 111
Q ss_pred hhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-------------hhhhhhcccCCCC-CCCEEEE-Eecch
Q 047214 97 GGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-------------QLEGLIGELDQFG-PGSRIVV-TTRDK 161 (658)
Q Consensus 97 ~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~l~~~~-~~~~ilv-ttR~~ 161 (658)
+.....+.........+.......+.+|++|+++... ....++..+.... .+..+++ ||...
T Consensus 248 ---i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~ 324 (733)
T TIGR01243 248 ---IMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRP 324 (733)
T ss_pred ---HhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCCh
Confidence 0111111110011223333445567899999985431 1233433332222 2333343 45443
Q ss_pred H-HHHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 162 R-VLEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 162 ~-~~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
. +...+. .....+.+...+.++-.+++.....+.....+ .....+++.+.|..-
T Consensus 325 ~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d---~~l~~la~~t~G~~g 382 (733)
T TIGR01243 325 DALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED---VDLDKLAEVTHGFVG 382 (733)
T ss_pred hhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc---cCHHHHHHhCCCCCH
Confidence 2 222221 12457788888888888888765432211111 125778888888653
No 189
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.64 E-value=9.1e-05 Score=74.70 Aligned_cols=83 Identities=17% Similarity=0.041 Sum_probs=52.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc-cccCceEEEeccccccccchhhHhHHHhh----hcCCCC-------------
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS-SEFEGRCFLSDIRKNSETGGGKILSEKLE----VAGANI------------- 112 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~~~------------- 112 (658)
.-+..+|+|++|+||||||+++++.+. ++|+..+|+..+.+.. ....++..++.+ ......
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~-~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP-EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch-hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 345677999999999999999999854 4799999998555522 122233333221 111111
Q ss_pred -chhHHHHhcCcceEEEEeCCCCch
Q 047214 113 -PHFTKERVRRMKVLIVLDDVNEVG 136 (658)
Q Consensus 113 -~~~l~~~l~~~~~LlvlDdv~~~~ 136 (658)
+++++ -.+++.+|++|++....
T Consensus 247 ~Ae~~~--e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 247 KAKRLV--EHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHH--HcCCCEEEEEEChHHHH
Confidence 11122 25689999999996554
No 190
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00083 Score=68.96 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=85.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~Llvl 129 (658)
.....+.++|++|+|||+||.+++.. ..|+.+-.++ .... .++..-+.... ....+.+.-+..--.||+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS---pe~m-iG~sEsaKc~~-----i~k~F~DAYkS~lsiivv 604 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS---PEDM-IGLSESAKCAH-----IKKIFEDAYKSPLSIIVV 604 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC---hHHc-cCccHHHHHHH-----HHHHHHHhhcCcceEEEE
Confidence 45667889999999999999999964 5677654443 1110 01100001000 023455566677789999
Q ss_pred eCCCCchhhhhhhcc------------c---CCCCCCCEEEEEecchHHHHhh---cCCCceEEcCCCCh-HHHHHHHHH
Q 047214 130 DDVNEVGQLEGLIGE------------L---DQFGPGSRIVVTTRDKRVLEKF---RGEKKIYRVNGLEF-EEAFEHFCN 190 (658)
Q Consensus 130 Ddv~~~~~~~~l~~~------------l---~~~~~~~~ilvttR~~~~~~~~---~~~~~~~~l~~L~~-~~~~~l~~~ 190 (658)
||++..-+|-.+.+. + +..++.--|+-||....+...| ......|.++.++. ++..+.+..
T Consensus 605 DdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 605 DDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 999776655443332 2 2223333455567666777776 12355888998887 666666654
Q ss_pred HhcCCCCCCchhHHHHHHHHHHc
Q 047214 191 FAFEENHCPEDLNWHSQRVVEYA 213 (658)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~ 213 (658)
.- ...+...+..+.+...+|
T Consensus 685 ~n---~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 685 LN---IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred cc---CCCcchhHHHHHHHhccc
Confidence 32 112233333445544444
No 191
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.63 E-value=0.00055 Score=72.78 Aligned_cols=177 Identities=14% Similarity=0.131 Sum_probs=92.1
Q ss_pred CCcccccchHhhHHHHh---cc---cCC-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 28 NGLVGLNSRIEQIKPFL---CM---DLS-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l---~~---~~~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
..+.|.+...+.+.+.. .. ..+ ..++-|.++|++|+|||.+|+.++..+.-.| +-+. ... +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~-~~~--------l 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLD-VGK--------L 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEE-hHH--------h
Confidence 45667665554444321 11 001 3456788999999999999999999865332 1111 111 1
Q ss_pred hHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----------h----hhhhhcccCCCCCCCEEEEEecchH-HHH
Q 047214 101 LSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----------Q----LEGLIGELDQFGPGSRIVVTTRDKR-VLE 165 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------~----~~~l~~~l~~~~~~~~ilvttR~~~-~~~ 165 (658)
.....+.......+.+...-...+++|++|+++..- . ...++..+.....+.-||.||.... +..
T Consensus 296 ~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 296 FGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCH
Confidence 111111110000122222223568999999996421 0 1222332332233445666776553 222
Q ss_pred hh---cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 166 KF---RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 166 ~~---~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
.+ ......+.++.-+.++-.++|..+..+...... .......+++.+.|.-
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~-~~~dl~~La~~T~GfS 429 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSW-KKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcc-cccCHHHHHhhcCCCC
Confidence 22 133567888888888888999877644221110 0112466777777654
No 192
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.62 E-value=0.00025 Score=81.43 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=70.7
Q ss_pred CCCcccccchHhhHHHHhccc------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh-h
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG-K 99 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~ 99 (658)
...++|.+..++.+.+.+... .+....++.++|++|+|||++|+.+++.+-..-...+.+. .++......+ .
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d-~s~~~~~~~~~~ 586 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLD-MSEYMEKHTVSK 586 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEE-chhccccccHHH
Confidence 367999999999998887621 1122356789999999999999999998533222333333 2222221111 1
Q ss_pred HhHHHhhhcCCCCchhHHHHhcCcc-eEEEEeCCCCch--hhhhhhcccC
Q 047214 100 ILSEKLEVAGANIPHFTKERVRRMK-VLIVLDDVNEVG--QLEGLIGELD 146 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l~~~~-~LlvlDdv~~~~--~~~~l~~~l~ 146 (658)
.+..-.+..+.+....+.+.++.++ .++++|+++... .++.++..+.
T Consensus 587 l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 587 LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 1111111111122445777777776 588999998765 3555555544
No 193
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.60 E-value=0.0027 Score=64.71 Aligned_cols=103 Identities=12% Similarity=0.018 Sum_probs=69.8
Q ss_pred ceEEEEeCCCCch-----------hhhhhhcccCCCCCCCEEEEEecchHHHH----hh-cCCCceEEcCCCChHHHHHH
Q 047214 124 KVLIVLDDVNEVG-----------QLEGLIGELDQFGPGSRIVVTTRDKRVLE----KF-RGEKKIYRVNGLEFEEAFEH 187 (658)
Q Consensus 124 ~~LlvlDdv~~~~-----------~~~~l~~~l~~~~~~~~ilvttR~~~~~~----~~-~~~~~~~~l~~L~~~~~~~l 187 (658)
+=++|+|++.... +|...+.. .+-..||++|-+..... .+ ....+.+.|...+++.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 5689999984322 34443332 44567888887764333 33 23467899999999999999
Q ss_pred HHHHhcCCCCC------------------CchhHHHHHHHHHHcCCCcchhHHhhcccccc
Q 047214 188 FCNFAFEENHC------------------PEDLNWHSQRVVEYADGNPLVPKVLGSSLCLK 230 (658)
Q Consensus 188 ~~~~~~~~~~~------------------~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~ 230 (658)
...+....... ...........++..||--.-+..+++.++.-
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG 285 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG 285 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence 99887443110 01244456778889999999999999988754
No 194
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.60 E-value=0.00022 Score=70.45 Aligned_cols=163 Identities=17% Similarity=0.188 Sum_probs=93.8
Q ss_pred CCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh--hHhHH
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG--KILSE 103 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~--~~l~~ 103 (658)
..+.|.+|+.++..+..++.+....-+..|.|+|-+|.|||.+.+++.+... ...+|++ +.+.+....+ .++.+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n-~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLN-CVECFTYAILLEKILNK 79 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---Ccceeee-hHHhccHHHHHHHHHHH
Confidence 3567999999999999999875422345668999999999999999999863 3468888 4444444433 33333
Q ss_pred HhhhcC-CCC-----------chhHHH--Hhc--CcceEEEEeCCCCchhhhh-----hhcccCC-CCCCCEEEEEecch
Q 047214 104 KLEVAG-ANI-----------PHFTKE--RVR--RMKVLIVLDDVNEVGQLEG-----LIGELDQ-FGPGSRIVVTTRDK 161 (658)
Q Consensus 104 ~l~~~~-~~~-----------~~~l~~--~l~--~~~~LlvlDdv~~~~~~~~-----l~~~l~~-~~~~~~ilvttR~~ 161 (658)
....+. .+. ...+.+ ... ++.++||||+++...+.+. +.....- ..+...|+...-..
T Consensus 80 ~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~ 159 (438)
T KOG2543|consen 80 SQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSC 159 (438)
T ss_pred hccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecccc
Confidence 311111 111 112222 122 3589999999977654332 2111100 12333333332221
Q ss_pred -HHHHhhcCC--CceEEcCCCChHHHHHHHHHHh
Q 047214 162 -RVLEKFRGE--KKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 162 -~~~~~~~~~--~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
.....-.|. ..++....-+.++....+.+.-
T Consensus 160 e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 160 EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 111110132 3356668889999888886643
No 195
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.59 E-value=0.00026 Score=65.66 Aligned_cols=120 Identities=22% Similarity=0.230 Sum_probs=60.3
Q ss_pred ccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh--hccccCceEEEeccccccccchh------------
Q 047214 33 LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ--FSSEFEGRCFLSDIRKNSETGGG------------ 98 (658)
Q Consensus 33 R~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~------------ 98 (658)
+..+-....+.+.+ ..++.+.|++|.|||.||.+.+-+ ..+.|+.+++....-+.....+.
T Consensus 5 ~~~~Q~~~~~al~~-----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 5 KNEEQKFALDALLN-----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp -SHHHHHHHHHHHH------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TT
T ss_pred CCHHHHHHHHHHHh-----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 44555666666653 448999999999999999999877 34567777776533221111111
Q ss_pred -hHhHHHhhhc-CCCCchhHH----------HHhcCc---ceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecc
Q 047214 99 -KILSEKLEVA-GANIPHFTK----------ERVRRM---KVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRD 160 (658)
Q Consensus 99 -~~l~~~l~~~-~~~~~~~l~----------~~l~~~---~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~ 160 (658)
.-+.+.+... +....+.+. ..++++ +..+|+|++.+.. ++..++.. .+.+++++++--.
T Consensus 80 ~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 80 LRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp THHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred HHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 1111222111 111111111 122332 5799999997655 56666555 5679999998764
No 196
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.58 E-value=0.00078 Score=68.99 Aligned_cols=149 Identities=17% Similarity=0.156 Sum_probs=87.2
Q ss_pred CcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc---------------------CceEEEe
Q 047214 29 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF---------------------EGRCFLS 87 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f---------------------~~~~~~~ 87 (658)
.++|-+....++..+..... .-...+.++|++|+||||+|..+++.+.... +.+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 46788888888888887532 2334599999999999999999999844211 2233332
Q ss_pred ccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh--hhhhhcccCCCCCCCEEEEEecch-HHH
Q 047214 88 DIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ--LEGLIGELDQFGPGSRIVVTTRDK-RVL 164 (658)
Q Consensus 88 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~ilvttR~~-~~~ 164 (658)
...........+.+.++........ ..++.-++|+|+++.... -..++..+-......++|++|.+. .+.
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~-------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il 153 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESP-------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKIL 153 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCC-------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhcc
Confidence 1111110001122222221111000 035678999999987763 445555554445677888887744 344
Q ss_pred HhhcCCCceEEcCCCChHHHH
Q 047214 165 EKFRGEKKIYRVNGLEFEEAF 185 (658)
Q Consensus 165 ~~~~~~~~~~~l~~L~~~~~~ 185 (658)
....+.+..+++.+.+..+..
T Consensus 154 ~tI~SRc~~i~f~~~~~~~~i 174 (325)
T COG0470 154 PTIRSRCQRIRFKPPSRLEAI 174 (325)
T ss_pred chhhhcceeeecCCchHHHHH
Confidence 444567788888884444333
No 197
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0022 Score=64.20 Aligned_cols=162 Identities=12% Similarity=0.123 Sum_probs=98.5
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh-cccc-------------------CceEEEeccccccccch
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSEF-------------------EGRCFLSDIRKNSETGG 97 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~f-------------------~~~~~~~~~~~~~~~~~ 97 (658)
+.+.+.+... .-...+.++|+.|+||+++|..+++.+ +..- +...++.. ......-.
T Consensus 13 ~~l~~~~~~~--rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-~~~~~~I~ 89 (319)
T PRK06090 13 QNWKAGLDAG--RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKP-EKEGKSIT 89 (319)
T ss_pred HHHHHHHHcC--CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec-CcCCCcCC
Confidence 4555555432 335678899999999999999999973 2211 11111110 00000000
Q ss_pred hhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHHhhcC
Q 047214 98 GKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLEKFRG 169 (658)
Q Consensus 98 ~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~~~~~ 169 (658)
++. .+.+.+.+ .++.-++|+|+++... ....++..+-+-..+..+|++|.+. .+.....+
T Consensus 90 vdq------------iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 90 VEQ------------IRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred HHH------------HHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 111 22222232 2346799999998765 3666666665444556666655544 56666667
Q ss_pred CCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhh
Q 047214 170 EKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLG 224 (658)
Q Consensus 170 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a 224 (658)
++..+.+.+++.+++.+.+.... .+ ....+++.++|.|+....+.
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~----~~------~~~~~l~l~~G~p~~A~~~~ 202 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKGQG----IT------VPAYALKLNMGSPLKTLAMM 202 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHHcC----Cc------hHHHHHHHcCCCHHHHHHHh
Confidence 88999999999999999886542 11 13567899999998665543
No 198
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.55 E-value=0.00015 Score=66.49 Aligned_cols=74 Identities=26% Similarity=0.283 Sum_probs=42.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLD 130 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlD 130 (658)
...-+.++|.+|+|||.||..+++.+.+.-..+.|+. ..+ ++..+-........+.+.+.+.+ .=|||||
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-~~~--------L~~~l~~~~~~~~~~~~~~~l~~-~dlLilD 115 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-ASD--------LLDELKQSRSDGSYEELLKRLKR-VDLLILD 115 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-HHH--------HHHHHHCCHCCTTHCHHHHHHHT-SSCEEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-cCc--------eeccccccccccchhhhcCcccc-ccEeccc
Confidence 3467999999999999999999998665545556655 211 11111111122223344445543 4577799
Q ss_pred CCCC
Q 047214 131 DVNE 134 (658)
Q Consensus 131 dv~~ 134 (658)
|+-.
T Consensus 116 DlG~ 119 (178)
T PF01695_consen 116 DLGY 119 (178)
T ss_dssp TCTS
T ss_pred ccce
Confidence 9844
No 199
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00069 Score=72.48 Aligned_cols=182 Identities=20% Similarity=0.285 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHHh-----------hhhcccCCCCCCCcccccchHhhHHHHhccc---CCCCeEEEEEEcCCCCcHHH
Q 047214 2 DAQLVNKIVEDVLKN-----------LEKATVATDSSNGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTT 67 (658)
Q Consensus 2 ~~~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~vGR~~~~~~l~~~l~~~---~~~~~~vv~i~G~~GvGKTt 67 (658)
|+.+|+.|.+-+.+- +... .-+-+..=+|-++..+.|.++|.-. ..-.-+++.++|++|||||+
T Consensus 288 E~~ViRnYlDwll~lPW~~~sk~~~Dl~~a--~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTS 365 (782)
T COG0466 288 EATVIRNYLDWLLDLPWGKRSKDKLDLKKA--EKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTS 365 (782)
T ss_pred hHHHHHHHHHHHHhCCCccccchhhhHHHH--HHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchh
Confidence 456666666644431 1221 3334566789999999999988732 11345799999999999999
Q ss_pred HHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHH---hcCcceEEEEeCCCCch------hh
Q 047214 68 LATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKER---VRRMKVLIVLDDVNEVG------QL 138 (658)
Q Consensus 68 La~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~---l~~~~~LlvlDdv~~~~------~~ 138 (658)
|++.+++.....|-.. -+-.+++.....+- =...++ ....++.+. .+.++=+++||.++... .-
T Consensus 366 LgkSIA~al~RkfvR~-sLGGvrDEAEIRGH--RRTYIG----amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPa 438 (782)
T COG0466 366 LGKSIAKALGRKFVRI-SLGGVRDEAEIRGH--RRTYIG----AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPA 438 (782)
T ss_pred HHHHHHHHhCCCEEEE-ecCccccHHHhccc--cccccc----cCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChH
Confidence 9999999987766321 11122222221100 000000 002233332 34567899999996543 12
Q ss_pred hhhhcccCC-CC------------CCCEE--EEEecchH-HHHhhcCCCceEEcCCCChHHHHHHHHHHh
Q 047214 139 EGLIGELDQ-FG------------PGSRI--VVTTRDKR-VLEKFRGEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 139 ~~l~~~l~~-~~------------~~~~i--lvttR~~~-~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
..++..+.. +. .-|.| |.|..+-. +...+..+-.+|++.+.+.+|-.+.-+++.
T Consensus 439 SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 439 SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 333333311 10 12233 33444333 222222566899999999999998877765
No 200
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.52 E-value=8.3e-05 Score=50.20 Aligned_cols=38 Identities=26% Similarity=0.300 Sum_probs=27.6
Q ss_pred ccceEEecccCCCCCCC-CCCCCCccEEEecCCCccccc
Q 047214 424 NLRYLHWDKYPLRTLPS-NFKPENLVELNLHFSKVEQLW 461 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~-~~~l~~L~~L~L~~~~i~~l~ 461 (658)
+|++|++++|+|+.+|+ ...|++|++|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 67788888888888877 447888888888888777654
No 201
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00018 Score=64.62 Aligned_cols=76 Identities=17% Similarity=0.227 Sum_probs=33.5
Q ss_pred CccEEEecCCCcccccccccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccccc--ccccCCCCCCEEec
Q 047214 446 NLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVP--SSIQNFKYLSALSF 520 (658)
Q Consensus 446 ~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l 520 (658)
+...+||+.|.+..++ .+..+..|.+|.+++|+ ++.+. ...+++|..|.+.+|++..+. ..+..||+|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 3444444444444331 23344444555544442 22222 223444555555555554432 12444555555555
Q ss_pred cCC
Q 047214 521 EGC 523 (658)
Q Consensus 521 ~~~ 523 (658)
-+|
T Consensus 121 l~N 123 (233)
T KOG1644|consen 121 LGN 123 (233)
T ss_pred cCC
Confidence 554
No 202
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.50 E-value=0.00017 Score=64.75 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=75.3
Q ss_pred CCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccC-CCCccEEeccCCC--cccccC-CCcCCCcc
Q 047214 418 LDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKE-AFKLKSINLSHCR--HFIDMS-YPSAPNLE 493 (658)
Q Consensus 418 ~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~-l~~L~~L~l~~~~--~~~~~~-l~~l~~L~ 493 (658)
++-+.++...++|+.|.+..++....+..|..|.|.+|.|+.+-+.+.. +++|+.|.+.+|. .+.++. +..+|.|+
T Consensus 37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 3334446667788888777777666788888888888888877666554 4568888888873 233333 78888888
Q ss_pred EEEeecCCccccc----ccccCCCCCCEEeccC
Q 047214 494 TYLLDYTNFACVP----SSIQNFKYLSALSFEG 522 (658)
Q Consensus 494 ~L~l~~~~~~~~~----~~~~~l~~L~~L~l~~ 522 (658)
.|.+-+|.+..-. ..++.+|+|++|+..+
T Consensus 117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 8888888776544 2467888888888764
No 203
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.50 E-value=0.0011 Score=71.10 Aligned_cols=63 Identities=22% Similarity=0.362 Sum_probs=48.1
Q ss_pred CCCCCCCcccccchHhhHHHHhcccC--CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~--~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.|....+++--.+-++++..||.... ....+++.++|++|+||||.++.+++... |+..-|..
T Consensus 14 ~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~n 78 (519)
T PF03215_consen 14 APKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWIN 78 (519)
T ss_pred CCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEecC
Confidence 45566667767778899999998531 13467999999999999999999999853 55566654
No 204
>PHA00729 NTP-binding motif containing protein
Probab=97.49 E-value=0.0012 Score=62.05 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+...++|+|.+|+||||||..+++++.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566799999999999999999999854
No 205
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.0026 Score=59.82 Aligned_cols=175 Identities=18% Similarity=0.132 Sum_probs=93.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhh-HhHHHhhhcCCCC-------chhHHHHh-
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGK-ILSEKLEVAGANI-------PHFTKERV- 120 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~-------~~~l~~~l- 120 (658)
++.+++.++|.-|.|||.+.+.+....-++=..++.+. -+..+.....+ ++.+.-....... .+.+.+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-KPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-CcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 56779999999999999999966655443212221111 11111111111 1112111111111 22222322
Q ss_pred cCcc-eEEEEeCCCCch--hhhhhhcc--cCC-CCCCCEEEEEecch-------HHHHhhcCCCce-EEcCCCChHHHHH
Q 047214 121 RRMK-VLIVLDDVNEVG--QLEGLIGE--LDQ-FGPGSRIVVTTRDK-------RVLEKFRGEKKI-YRVNGLEFEEAFE 186 (658)
Q Consensus 121 ~~~~-~LlvlDdv~~~~--~~~~l~~~--l~~-~~~~~~ilvttR~~-------~~~~~~~~~~~~-~~l~~L~~~~~~~ 186 (658)
++++ ..+++|+.+... ..+.+... +.. ....-+|+.....+ ............ |.+.|++.++...
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~ 207 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGL 207 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHH
Confidence 3555 899999986543 33333222 111 11112344332211 011111123344 8999999999999
Q ss_pred HHHHHhcCCCCCCc-hhHHHHHHHHHHcCCCcchhHHhhc
Q 047214 187 HFCNFAFEENHCPE-DLNWHSQRVVEYADGNPLVPKVLGS 225 (658)
Q Consensus 187 l~~~~~~~~~~~~~-~~~~~~~~i~~~~~g~Plai~~~a~ 225 (658)
++..+..+...+.+ ...+....|..+..|.|.+|..++.
T Consensus 208 yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 208 YLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99988766543333 2344678899999999999988765
No 206
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.46 E-value=0.00044 Score=78.08 Aligned_cols=184 Identities=15% Similarity=0.207 Sum_probs=103.0
Q ss_pred hhHHHHHHHHHHHHh-hhhcc--------cCCCCCCCcccccchHhhHHHHhccc---CCCCeEEEEEEcCCCCcHHHHH
Q 047214 2 DAQLVNKIVEDVLKN-LEKAT--------VATDSSNGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLA 69 (658)
Q Consensus 2 ~~~~i~~~~~~~~~~-~~~~~--------~~~~~~~~~vGR~~~~~~l~~~l~~~---~~~~~~vv~i~G~~GvGKTtLa 69 (658)
|+.+++.|.+-+..- +...+ ..-.-+...+|.++..+.|.+++... ......++.++|++|+||||+|
T Consensus 287 e~~~~~~yl~~~~~~pw~~~~~~~~~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 287 EATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLG 366 (784)
T ss_pred hHHHHHHHHHHHHhCCCCCCCcccccHHHHHHHhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHH
Confidence 456677777766541 11110 01123455899999999999888731 1134567999999999999999
Q ss_pred HHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhc---CcceEEEEeCCCCchh------hhh
Q 047214 70 TAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVR---RMKVLIVLDDVNEVGQ------LEG 140 (658)
Q Consensus 70 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~~~------~~~ 140 (658)
+.++......|-.+- .....+.. ++.... ..-.......+.+.++ ..+-+++||+++.... ...
T Consensus 367 ~~ia~~l~~~~~~i~----~~~~~d~~--~i~g~~-~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~a 439 (784)
T PRK10787 367 QSIAKATGRKYVRMA----LGGVRDEA--EIRGHR-RTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASA 439 (784)
T ss_pred HHHHHHhCCCEEEEE----cCCCCCHH--Hhccch-hccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHH
Confidence 999987654442211 11111110 111000 0000011222222222 2345789999965432 244
Q ss_pred hhcccCC---------------CCCCCEEEEEecchHHHHhhcCCCceEEcCCCChHHHHHHHHHHh
Q 047214 141 LIGELDQ---------------FGPGSRIVVTTRDKRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 141 l~~~l~~---------------~~~~~~ilvttR~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
++..+.. ...+.-+|.|+....+...+.+...++.+.+++.++-.+..+++.
T Consensus 440 Llevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 440 LLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred HHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 4443321 013344556665555544444667899999999999988887765
No 207
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.45 E-value=0.00047 Score=78.60 Aligned_cols=158 Identities=18% Similarity=0.257 Sum_probs=85.5
Q ss_pred CCcccccchHhhHHHHhccc---CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhH--
Q 047214 28 NGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILS-- 102 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~---~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~-- 102 (658)
...+|.++..+.+.+++... ...+.+++.++|++|+|||++|+.+++.....|-.+. .....+.. ++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~----~~~~~~~~--~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFS----LGGVRDEA--EIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEe----CCCcccHH--HHcCCC
Confidence 45789999888988876522 1123458999999999999999999998755442211 11111100 0000
Q ss_pred -HHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh------hhhhhcccCC--------C-------CCCCEEEEEecc
Q 047214 103 -EKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ------LEGLIGELDQ--------F-------GPGSRIVVTTRD 160 (658)
Q Consensus 103 -~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~~~l~~~l~~--------~-------~~~~~ilvttR~ 160 (658)
...+.......+.+.+. ...+-+++||+++.... ...++..+.. . ..+..+|.||..
T Consensus 394 ~~~~g~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~ 472 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANS 472 (775)
T ss_pred CceeCCCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCC
Confidence 00010000001222222 22344889999976531 1223322211 0 023344555544
Q ss_pred hH-HHHhhcCCCceEEcCCCChHHHHHHHHHHh
Q 047214 161 KR-VLEKFRGEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 161 ~~-~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
.. +...+......+.+.+++.++-.+.+..+.
T Consensus 473 ~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 473 IDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred chhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 32 233333556789999999998888876654
No 208
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.44 E-value=0.0013 Score=64.71 Aligned_cols=25 Identities=36% Similarity=0.392 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+.+.|.|++|+|||++|+.+++...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3567999999999999999998653
No 209
>PRK09183 transposase/IS protein; Provisional
Probab=97.43 E-value=0.00038 Score=68.11 Aligned_cols=35 Identities=26% Similarity=0.192 Sum_probs=26.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFL 86 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~ 86 (658)
...+.|+|++|+|||+||..++.........+.++
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 45688999999999999999988754443334443
No 210
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.43 E-value=1.8e-06 Score=90.94 Aligned_cols=127 Identities=22% Similarity=0.259 Sum_probs=93.5
Q ss_pred CcceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCC
Q 047214 359 TDAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTL 438 (658)
Q Consensus 359 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~l 438 (658)
|.++..+++.++... ...+++.=++.|+.|+++.|++ .++. .+..++ +|+.|+|++|.+..+
T Consensus 163 Wn~L~~a~fsyN~L~---~mD~SLqll~ale~LnLshNk~-------------~~v~-~Lr~l~-~LkhLDlsyN~L~~v 224 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV---LMDESLQLLPALESLNLSHNKF-------------TKVD-NLRRLP-KLKHLDLSYNCLRHV 224 (1096)
T ss_pred hhhHhhhhcchhhHH---hHHHHHHHHHHhhhhccchhhh-------------hhhH-HHHhcc-cccccccccchhccc
Confidence 444554544444332 2335566678899999999986 2233 677777 999999999999999
Q ss_pred CCCC--CCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC----CCcCCCccEEEeecCCccccc
Q 047214 439 PSNF--KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS----YPSAPNLETYLLDYTNFACVP 506 (658)
Q Consensus 439 p~~~--~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~ 506 (658)
|... +++ |..|.|++|.++++ .++.+|.+|+.||+++| .+.+.. +..+..|..|++.+|.+-+-|
T Consensus 225 p~l~~~gc~-L~~L~lrnN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 225 PQLSMVGCK-LQLLNLRNNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cccchhhhh-heeeeecccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 8765 565 99999999988877 45778899999999988 444443 667788889999998886655
No 211
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.42 E-value=0.00059 Score=65.63 Aligned_cols=115 Identities=13% Similarity=0.133 Sum_probs=60.9
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhH
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFT 116 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 116 (658)
+..+.++..... .....+.++|.+|+|||+||.++++.+......++++. +.+. +..+..... ......+.+
T Consensus 85 l~~a~~~~~~~~-~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it-~~~l-----~~~l~~~~~-~~~~~~~~~ 156 (244)
T PRK07952 85 LSKARQYVEEFD-GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT-VADI-----MSAMKDTFS-NSETSEEQL 156 (244)
T ss_pred HHHHHHHHHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE-HHHH-----HHHHHHHHh-hccccHHHH
Confidence 344444444322 23457889999999999999999999765544555553 2111 112222221 111113345
Q ss_pred HHHhcCcceEEEEeCCCCc--hhhhh--hhcccCCC-CCCCEEEEEecc
Q 047214 117 KERVRRMKVLIVLDDVNEV--GQLEG--LIGELDQF-GPGSRIVVTTRD 160 (658)
Q Consensus 117 ~~~l~~~~~LlvlDdv~~~--~~~~~--l~~~l~~~-~~~~~ilvttR~ 160 (658)
.+.+. +.=+|||||+... .+|+. +...+... .....+|+||..
T Consensus 157 l~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 157 LNDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred HHHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 55555 3457888998543 34443 22222211 123456777764
No 212
>PRK06526 transposase; Provisional
Probab=97.42 E-value=0.00024 Score=69.05 Aligned_cols=34 Identities=26% Similarity=0.164 Sum_probs=26.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCF 85 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~ 85 (658)
.+.+.++|++|+|||+||..++....+....+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 4568999999999999999999886544333444
No 213
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.42 E-value=0.00098 Score=72.35 Aligned_cols=50 Identities=30% Similarity=0.463 Sum_probs=40.0
Q ss_pred CCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
|..-.+++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++..
T Consensus 61 p~~f~~iiGqs~~i~~l~~al~~---~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 61 PKSFDEIIGQEEGIKALKAALCG---PNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred cCCHHHeeCcHHHHHHHHHHHhC---CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34445799999999999887654 345567899999999999999998753
No 214
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=4.9e-06 Score=87.81 Aligned_cols=55 Identities=20% Similarity=0.137 Sum_probs=24.8
Q ss_pred ccceEEecccCCCCCCCCCCCCCccEEEecCCCccccc--ccccCCCCccEEeccCC
Q 047214 424 NLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLW--EGKKEAFKLKSINLSHC 478 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~--~~~~~l~~L~~L~l~~~ 478 (658)
+|..|.+++|.++.+-...+|++|+-||++.|-+.+-. ..++.|..|+.|+|.+|
T Consensus 233 ~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 233 KLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred hheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 45555555555554444445555555555555433210 11233444455555554
No 215
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.40 E-value=0.00037 Score=66.18 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=31.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+-.++|.|.+|+|||+++..+.......|+.++++.
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 335679999999999999999999888998777765
No 216
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.40 E-value=0.0028 Score=60.01 Aligned_cols=214 Identities=16% Similarity=0.242 Sum_probs=117.6
Q ss_pred CCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc------ccCceEEEeccccccccchh-
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS------EFEGRCFLSDIRKNSETGGG- 98 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~- 98 (658)
.-....++++.-..+.+.... ++.+.+.++|++|.||-|.+..+.++.=+ .-+...|.......-....+
T Consensus 11 sl~~l~~~~e~~~~Lksl~~~---~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvs 87 (351)
T KOG2035|consen 11 SLDELIYHEELANLLKSLSST---GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVS 87 (351)
T ss_pred hhhhcccHHHHHHHHHHhccc---CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEec
Confidence 344566777666677665553 56788999999999999999999888211 12333333311110000000
Q ss_pred -----hHhHHHhhhcCCCC-chhHHHHhcC--------cc-eEEEEeCCCCch-h-hhhhhcccCCCCCCCEEEEEecch
Q 047214 99 -----KILSEKLEVAGANI-PHFTKERVRR--------MK-VLIVLDDVNEVG-Q-LEGLIGELDQFGPGSRIVVTTRDK 161 (658)
Q Consensus 99 -----~~l~~~l~~~~~~~-~~~l~~~l~~--------~~-~LlvlDdv~~~~-~-~~~l~~~l~~~~~~~~ilvttR~~ 161 (658)
++--+-.+..+--. ++.+++..+. +. -++|+-.++... + -..+....-.-...+|+|+...+.
T Consensus 88 S~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~ 167 (351)
T KOG2035|consen 88 SNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNST 167 (351)
T ss_pred ccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCc
Confidence 00000000000000 2222222221 12 466676665543 1 222222221123578887754433
Q ss_pred -HHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhccccc----------c
Q 047214 162 -RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCL----------K 230 (658)
Q Consensus 162 -~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~----------~ 230 (658)
.+-......+-.+++...+++|....+.+.+..+....+ .+++.+|+++++|+---...+..+++- .
T Consensus 168 SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~ 245 (351)
T KOG2035|consen 168 SRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQV 245 (351)
T ss_pred ccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCC
Confidence 222223355678999999999999999988866655444 567999999999986544333333321 1
Q ss_pred -cHHHHHHHHHHHhh
Q 047214 231 -RKSHWENLLHDLNR 244 (658)
Q Consensus 231 -~~~~w~~~~~~l~~ 244 (658)
+..+|+-++.+...
T Consensus 246 i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 246 IPKPDWEIYIQEIAR 260 (351)
T ss_pred CCCccHHHHHHHHHH
Confidence 45689888877654
No 217
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.38 E-value=0.00031 Score=72.53 Aligned_cols=101 Identities=17% Similarity=0.234 Sum_probs=61.1
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc--ccCceEEEeccccccccchhhHhHHH-
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS--EFEGRCFLSDIRKNSETGGGKILSEK- 104 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~l~~~- 104 (658)
..+++.+..++.+...+.. .+.+.++|++|+|||++|+++++.... .+..+.|+. ++...... +.+...
T Consensus 175 ~d~~i~e~~le~l~~~L~~-----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt-FHpsySYe--DFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI-----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ-FHQSYSYE--DFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe-ecccccHH--HHhcccC
Confidence 4577888888899888864 346888999999999999999998543 455555655 43322211 111111
Q ss_pred ---hhhcCC-CC-chhHHHHhc--CcceEEEEeCCCCch
Q 047214 105 ---LEVAGA-NI-PHFTKERVR--RMKVLIVLDDVNEVG 136 (658)
Q Consensus 105 ---l~~~~~-~~-~~~l~~~l~--~~~~LlvlDdv~~~~ 136 (658)
.+.... .. .+.+.+.-+ ++++++|+|++....
T Consensus 247 P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 247 PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 000000 00 122223222 357999999997655
No 218
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.38 E-value=0.0018 Score=64.78 Aligned_cols=151 Identities=21% Similarity=0.255 Sum_probs=78.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHH-----hcCcc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKER-----VRRMK 124 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~-----l~~~~ 124 (658)
..++.++|||++|+|||.+|+.++....-.| +-++ .. ++.....++.+....+.+.+. -+.++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vs-a~--------eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aP 213 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMS-AG--------ELESENAGEPGKLIRQRYREAADIIKKKGKM 213 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEE-HH--------HhhcCcCCcHHHHHHHHHHHHHHHhhccCCC
Confidence 5678999999999999999999999865433 2222 11 111111111111111122111 14679
Q ss_pred eEEEEeCCCCch--------h------hhhhhcccC--------------CCCCCCEEEEEecchHH-HHhhcC--C-Cc
Q 047214 125 VLIVLDDVNEVG--------Q------LEGLIGELD--------------QFGPGSRIVVTTRDKRV-LEKFRG--E-KK 172 (658)
Q Consensus 125 ~LlvlDdv~~~~--------~------~~~l~~~l~--------------~~~~~~~ilvttR~~~~-~~~~~~--~-~~ 172 (658)
++|++|+++..- . ...++.... ....+..||+||..+.. ...+.. . ..
T Consensus 214 cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk 293 (413)
T PLN00020 214 SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEK 293 (413)
T ss_pred eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCc
Confidence 999999985321 0 122332211 12345677888866642 233312 2 22
Q ss_pred eEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 173 IYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 173 ~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
.| ..=+.++-.+.++........+ .....+|+....|=|+
T Consensus 294 ~i--~lPd~e~R~eIL~~~~r~~~l~----~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 294 FY--WAPTREDRIGVVHGIFRDDGVS----REDVVKLVDTFPGQPL 333 (413)
T ss_pred ee--CCCCHHHHHHHHHHHhccCCCC----HHHHHHHHHcCCCCCc
Confidence 33 3335555566666655333222 2335667777777664
No 219
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0026 Score=68.54 Aligned_cols=196 Identities=17% Similarity=0.200 Sum_probs=107.6
Q ss_pred HHHHHHHHHhhhhcccCCCCCCCcccccchHhhHHHHhccc--------CC-CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 7 NKIVEDVLKNLEKATVATDSSNGLVGLNSRIEQIKPFLCMD--------LS-DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~l~~~--------~~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.++.++....+.....|-+.=+.+=|-++...+|.+-+... .+ .+..=|.+||++|.|||-+|++++....
T Consensus 651 s~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs 730 (953)
T KOG0736|consen 651 SRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS 730 (953)
T ss_pred HHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce
Confidence 33444444444443344444466777888888888766531 01 2244577999999999999999998754
Q ss_pred cccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch---------------hhhhhh
Q 047214 78 SEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG---------------QLEGLI 142 (658)
Q Consensus 78 ~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~---------------~~~~l~ 142 (658)
=.| ++ + ++=+++.-.+++.+++..+.+.++=...+++|.+|++++.. .+.+++
T Consensus 731 L~F-----lS-V------KGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLL 798 (953)
T KOG0736|consen 731 LNF-----LS-V------KGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLL 798 (953)
T ss_pred eeE-----Ee-e------cCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHH
Confidence 333 22 1 11155555666665555555555556689999999996532 244555
Q ss_pred cccCCCC----CCCEEEEEecchH-HHHhhc---CCCceEEcCCCChHHHHH-HHHHHhcCCCCCCchhHHHHHHHHHHc
Q 047214 143 GELDQFG----PGSRIVVTTRDKR-VLEKFR---GEKKIYRVNGLEFEEAFE-HFCNFAFEENHCPEDLNWHSQRVVEYA 213 (658)
Q Consensus 143 ~~l~~~~----~~~~ilvttR~~~-~~~~~~---~~~~~~~l~~L~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~i~~~~ 213 (658)
..+.... .+.-||-+|..++ +..++. +..+-+.+.+=+++++.. .++... +.-.-+++. ...+|+++|
T Consensus 799 AELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlT-rkFkLdedV--dL~eiAk~c 875 (953)
T KOG0736|consen 799 AELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALT-RKFKLDEDV--DLVEIAKKC 875 (953)
T ss_pred HHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHH-HHccCCCCc--CHHHHHhhC
Confidence 5554333 2334554555443 333331 223455566555555553 333322 111111111 157788888
Q ss_pred CCCc
Q 047214 214 DGNP 217 (658)
Q Consensus 214 ~g~P 217 (658)
.-.-
T Consensus 876 p~~~ 879 (953)
T KOG0736|consen 876 PPNM 879 (953)
T ss_pred CcCC
Confidence 6543
No 220
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.37 E-value=5.2e-06 Score=69.42 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=64.3
Q ss_pred ccceEEecccCCCCCCCCC--CCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeec
Q 047214 424 NLRYLHWDKYPLRTLPSNF--KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDY 499 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~ 499 (658)
+|...+|++|.++.+|..+ ..+-++.|++++|.|.++|..+..++.|+.|+++.|. +...| +..+.+|-.|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCC
Confidence 5666788888888888776 5557888888888888888888888888888888884 44445 66678888888887
Q ss_pred CCccccccc
Q 047214 500 TNFACVPSS 508 (658)
Q Consensus 500 ~~~~~~~~~ 508 (658)
|....+|..
T Consensus 133 na~~eid~d 141 (177)
T KOG4579|consen 133 NARAEIDVD 141 (177)
T ss_pred CccccCcHH
Confidence 777776643
No 221
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00082 Score=71.16 Aligned_cols=175 Identities=17% Similarity=0.235 Sum_probs=95.2
Q ss_pred CCcccccchHhhHHHHhccc---------CC-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccch
Q 047214 28 NGLVGLNSRIEQIKPFLCMD---------LS-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGG 97 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~---------~~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 97 (658)
+.+=|.++...+|.+.+.-. -+ ..++-|.+||++|+|||++|+++++...-.|-.+ . .
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv------k------g 501 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV------K------G 501 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec------c------C
Confidence 44445666666666544411 01 4577888999999999999999999866555221 0 0
Q ss_pred hhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-------------hhhhhhcccCCCCCC--CEEEEEe-cch
Q 047214 98 GKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-------------QLEGLIGELDQFGPG--SRIVVTT-RDK 161 (658)
Q Consensus 98 ~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~l~~~~~~--~~ilvtt-R~~ 161 (658)
-+++....+.......+.+.+.=+--+.++.||.++... .+..++..+.-.... .-||-.| |..
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd 581 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPD 581 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChh
Confidence 022222222221111223333333457999999986532 134455554432322 2333334 333
Q ss_pred HHHHhhcC---CCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 162 RVLEKFRG---EKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 162 ~~~~~~~~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
.+..++.. ..+.+.++.=+.+.-.+.|+.++.+-.....- ...+|++++.|.-
T Consensus 582 ~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~v---dl~~La~~T~g~S 637 (693)
T KOG0730|consen 582 MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDV---DLEELAQATEGYS 637 (693)
T ss_pred hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccc---cHHHHHHHhccCC
Confidence 44444433 34566666666667778998887443322221 2466677666654
No 222
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0013 Score=63.41 Aligned_cols=76 Identities=20% Similarity=0.360 Sum_probs=48.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh----ccccCceEEEeccccccccchhhHhHHHhhhcCCCC---chhHHHHhcCcc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF----SSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANI---PHFTKERVRRMK 124 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~----~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~l~~~l~~~~ 124 (658)
.|++.++|++|.|||+|.+++++.. .+.+.....+. +... .+....+++.+.-. .+.+.+.++++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE-insh------sLFSKWFsESgKlV~kmF~kI~ELv~d~~ 249 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE-INSH------SLFSKWFSESGKLVAKMFQKIQELVEDRG 249 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE-Eehh------HHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Confidence 6899999999999999999999983 23444444433 1111 33444444444333 455666777664
Q ss_pred --eEEEEeCCCC
Q 047214 125 --VLIVLDDVNE 134 (658)
Q Consensus 125 --~LlvlDdv~~ 134 (658)
..+.+|+|+.
T Consensus 250 ~lVfvLIDEVES 261 (423)
T KOG0744|consen 250 NLVFVLIDEVES 261 (423)
T ss_pred cEEEEEeHHHHH
Confidence 4556788854
No 223
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.34 E-value=5.7e-05 Score=83.67 Aligned_cols=107 Identities=13% Similarity=0.067 Sum_probs=54.0
Q ss_pred CCCCCcccccceEEecccCCCCC--CCCC-CCCCccEEEecCCCcccccccccCCCCccEEeccCCCccc--ccC-CCcC
Q 047214 416 DGLDYLPKNLRYLHWDKYPLRTL--PSNF-KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFI--DMS-YPSA 489 (658)
Q Consensus 416 ~~~~~l~~~L~~L~l~~~~l~~l--p~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~--~~~-l~~l 489 (658)
..++.+.++|+.|.+.+-.+..- -... ++++|..||+|+++++.+ .+++.|++|+.|.+.+-.... ++- +-+|
T Consensus 141 ~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 141 KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred HHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 33444333666666665443311 1111 556666677777666666 556666666666655442211 111 5566
Q ss_pred CCccEEEeecCCccccc-------ccccCCCCCCEEeccCC
Q 047214 490 PNLETYLLDYTNFACVP-------SSIQNFKYLSALSFEGC 523 (658)
Q Consensus 490 ~~L~~L~l~~~~~~~~~-------~~~~~l~~L~~L~l~~~ 523 (658)
++|++||++.......+ +.-..+|+|+.|+.++.
T Consensus 220 ~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred cCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 66666666652221111 12233566666666653
No 224
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.34 E-value=0.00087 Score=62.86 Aligned_cols=111 Identities=11% Similarity=0.158 Sum_probs=66.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh-hHhHH-HhhhcCCCCchhHHHHhcCcceEEEEe
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG-KILSE-KLEVAGANIPHFTKERVRRMKVLIVLD 130 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~~l~~-~l~~~~~~~~~~l~~~l~~~~~LlvlD 130 (658)
+++.|.|+.|+||||++..++..........++...-+........ ..+.+ -.+.......+.++..++..+=.+++|
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~g 81 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVG 81 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEc
Confidence 4789999999999999999888765444444443312211111100 11111 011111222566777788888899999
Q ss_pred CCCCchhhhhhhcccCCCCCCCEEEEEecchHHHHh
Q 047214 131 DVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRVLEK 166 (658)
Q Consensus 131 dv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~~~~ 166 (658)
++.+.+....++... ..|..++.|+....+...
T Consensus 82 Eird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 82 EMRDLETIRLALTAA---ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred CCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHHH
Confidence 998877666555442 346668888887655433
No 225
>PRK12377 putative replication protein; Provisional
Probab=97.34 E-value=0.00063 Score=65.61 Aligned_cols=100 Identities=19% Similarity=0.096 Sum_probs=55.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeC
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDD 131 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDd 131 (658)
...+.++|++|+|||+||.++++.+.+....++++. +.+ .+..+...... ......+.+.+ .+.-||||||
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~-~~~-----l~~~l~~~~~~--~~~~~~~l~~l-~~~dLLiIDD 171 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT-VPD-----VMSRLHESYDN--GQSGEKFLQEL-CKVDLLVLDE 171 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE-HHH-----HHHHHHHHHhc--cchHHHHHHHh-cCCCEEEEcC
Confidence 467899999999999999999999776555556655 221 11222222111 11112233333 3567899999
Q ss_pred CCC--chhhh--hhhcccCCC-CCCCEEEEEecc
Q 047214 132 VNE--VGQLE--GLIGELDQF-GPGSRIVVTTRD 160 (658)
Q Consensus 132 v~~--~~~~~--~l~~~l~~~-~~~~~ilvttR~ 160 (658)
+.. ...|. .+...+... ...-.+|+||..
T Consensus 172 lg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 172 IGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 933 33333 232222211 123446777764
No 226
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.34 E-value=0.0047 Score=62.54 Aligned_cols=92 Identities=17% Similarity=0.250 Sum_probs=62.6
Q ss_pred CcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecc-hHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCC
Q 047214 122 RMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRD-KRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHC 198 (658)
Q Consensus 122 ~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~-~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 198 (658)
++.-++|+|+++... ....++..+-+-.++..+|++|.+ ..+.....+.+..+.+.+++.++..+.+.+.. .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 345689999998765 467777776554566666555554 45555555677899999999999999887652 1
Q ss_pred CchhHHHHHHHHHHcCCCcchhHHh
Q 047214 199 PEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 199 ~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
+. ...++..++|.|.....+
T Consensus 206 -~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 133577889999744433
No 227
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0041 Score=66.42 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=87.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccC-ceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEE
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFE-GRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~Llvl 129 (658)
..+.|.|.|+.|+|||+||++++..+.+.-. .+.++. ++.... ..++-+...+ ...+.+.+...+-++||
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs~l~~-~~~e~iQk~l-------~~vfse~~~~~PSiIvL 500 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS-CSTLDG-SSLEKIQKFL-------NNVFSEALWYAPSIIVL 500 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe-chhccc-hhHHHHHHHH-------HHHHHHHHhhCCcEEEE
Confidence 4567899999999999999999999764332 233333 222221 1133333333 24556677788999999
Q ss_pred eCCCCch--------hh----hhhhcccCC-----CCCCCE--EEEEecchHHHH-hh---cCCCceEEcCCCChHHHHH
Q 047214 130 DDVNEVG--------QL----EGLIGELDQ-----FGPGSR--IVVTTRDKRVLE-KF---RGEKKIYRVNGLEFEEAFE 186 (658)
Q Consensus 130 Ddv~~~~--------~~----~~l~~~l~~-----~~~~~~--ilvttR~~~~~~-~~---~~~~~~~~l~~L~~~~~~~ 186 (658)
||++... +| +.+...+.+ ...+.+ +|.|.....-.. .+ .-...++.+.++...+-.+
T Consensus 501 Ddld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 501 DDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred cchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHH
Confidence 9985321 11 111111100 123333 344444332111 11 1234578899998888888
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHcCCC-cchhHH
Q 047214 187 HFCNFAFEENHCPEDLNWHSQRVVEYADGN-PLVPKV 222 (658)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~ 222 (658)
+++....... .....+..+.+..+|+|. |.-+.+
T Consensus 581 IL~~~~s~~~--~~~~~~dLd~ls~~TEGy~~~DL~i 615 (952)
T KOG0735|consen 581 ILTTIFSKNL--SDITMDDLDFLSVKTEGYLATDLVI 615 (952)
T ss_pred HHHHHHHhhh--hhhhhHHHHHHHHhcCCccchhHHH
Confidence 7766543221 111222345588888874 444443
No 228
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0017 Score=71.48 Aligned_cols=151 Identities=15% Similarity=0.182 Sum_probs=86.4
Q ss_pred CCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-ccC-----ceEEEeccccccccchhhH
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-EFE-----GRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f~-----~~~~~~~~~~~~~~~~~~~ 100 (658)
-+..+||++|+..+.+.|.-.. .+.+ .++|.+|||||++|.-++.++.+ +.+ ..++--++..
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~-KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~--------- 236 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRT-KNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGS--------- 236 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccC-CCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHH---------
Confidence 3568999999999999998543 2223 46899999999999999999433 221 1111111110
Q ss_pred hHHHhhhc-CCCCchhHH---HHh-cCcceEEEEeCCCCch----------hhhhhhcccCCCCCCCEEEEEecchHH--
Q 047214 101 LSEKLEVA-GANIPHFTK---ERV-RRMKVLIVLDDVNEVG----------QLEGLIGELDQFGPGSRIVVTTRDKRV-- 163 (658)
Q Consensus 101 l~~~l~~~-~~~~~~~l~---~~l-~~~~~LlvlDdv~~~~----------~~~~l~~~l~~~~~~~~ilvttR~~~~-- 163 (658)
-..+.. ..+..++++ +.+ +..+.+|++|.++... +-..++.+....+.--.|-.||-++.-
T Consensus 237 --LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 237 --LVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred --HhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 000000 001122222 222 2448999999986532 122222222212333345567765521
Q ss_pred ---HHhhcCCCceEEcCCCChHHHHHHHHHH
Q 047214 164 ---LEKFRGEKKIYRVNGLEFEEAFEHFCNF 191 (658)
Q Consensus 164 ---~~~~~~~~~~~~l~~L~~~~~~~l~~~~ 191 (658)
..++....+.+.++.-+.+++...++..
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 1222366789999999999999988653
No 229
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.31 E-value=0.00085 Score=67.13 Aligned_cols=119 Identities=16% Similarity=0.159 Sum_probs=66.6
Q ss_pred cccchHhhHHHHhcccC-CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCC
Q 047214 32 GLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGA 110 (658)
Q Consensus 32 GR~~~~~~l~~~l~~~~-~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 110 (658)
+|........+++..-. +...+-+.|+|..|+|||.||.++++.+.+....+.++. ++. -+..+..... .
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~-~~~-----l~~~lk~~~~---~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH-FPE-----FIRELKNSIS---D 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE-HHH-----HHHHHHHHHh---c
Confidence 45455555566665321 123467889999999999999999999765544555554 221 1122222221 1
Q ss_pred CCchhHHHHhcCcceEEEEeCCC--Cchhhhh--hhcccC-C-CCCCCEEEEEecc
Q 047214 111 NIPHFTKERVRRMKVLIVLDDVN--EVGQLEG--LIGELD-Q-FGPGSRIVVTTRD 160 (658)
Q Consensus 111 ~~~~~l~~~l~~~~~LlvlDdv~--~~~~~~~--l~~~l~-~-~~~~~~ilvttR~ 160 (658)
.......+.++ +.=||||||+- ....|.. ++..+. . ...+-.+++||.-
T Consensus 206 ~~~~~~l~~l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 GSVKEKIDAVK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CcHHHHHHHhc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11223333333 45689999984 3445543 444332 1 1245567777764
No 230
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.30 E-value=0.00036 Score=61.44 Aligned_cols=22 Identities=41% Similarity=0.446 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 047214 55 VGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~~ 76 (658)
|.|+|++|+|||++|+++++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 231
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.28 E-value=0.0049 Score=64.03 Aligned_cols=182 Identities=13% Similarity=0.084 Sum_probs=92.9
Q ss_pred ccchHhhHHHHhc-----ccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc----c------c--
Q 047214 33 LNSRIEQIKPFLC-----MDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS----E------T-- 95 (658)
Q Consensus 33 R~~~~~~l~~~l~-----~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~----~------~-- 95 (658)
-.+-+.++..||. ... -+.+++.|+|++|+||||.++.++.... +...-|..-+.... . .
T Consensus 87 HkkKI~eVk~WL~~~~~~~~~-l~~~iLLltGPsGcGKSTtvkvLskelg--~~~~Ew~Npi~~~~~~~~h~~t~~~~~~ 163 (634)
T KOG1970|consen 87 HKKKISEVKQWLKQVAEFTPK-LGSRILLLTGPSGCGKSTTVKVLSKELG--YQLIEWSNPINLKEPENLHNETSFLMFP 163 (634)
T ss_pred hHHhHHHHHHHHHHHHHhccC-CCceEEEEeCCCCCCchhHHHHHHHhhC--ceeeeecCCccccccccccccchhcccc
Confidence 3445788888887 222 4567999999999999999999998733 23334432111100 0 0
Q ss_pred --chhhHhHHHhhhc-CCCCchhHHHHhcCcceEEEEeCCCCc------hhhhhhhcccCCCCCCCEEEEEecchH----
Q 047214 96 --GGGKILSEKLEVA-GANIPHFTKERVRRMKVLIVLDDVNEV------GQLEGLIGELDQFGPGSRIVVTTRDKR---- 162 (658)
Q Consensus 96 --~~~~~l~~~l~~~-~~~~~~~l~~~l~~~~~LlvlDdv~~~------~~~~~l~~~l~~~~~~~~ilvttR~~~---- 162 (658)
..+......+... .-........-++.++.||.+||+-+. +..+.++..+...+.-.-|++.|-...
T Consensus 164 ~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~n 243 (634)
T KOG1970|consen 164 YQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNN 243 (634)
T ss_pred hhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCc
Confidence 0011111121111 001122222333455778999998442 234444444433332224444443221
Q ss_pred -------HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCc----hhHHHHHHHHHHcCCCc
Q 047214 163 -------VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPE----DLNWHSQRVVEYADGNP 217 (658)
Q Consensus 163 -------~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~i~~~~~g~P 217 (658)
..-.+......+...|....--.+.+......+..... .....++.|++.++|.-
T Consensus 244 nq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~GDI 309 (634)
T KOG1970|consen 244 NQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGGDI 309 (634)
T ss_pred chhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCccH
Confidence 11112245667888888887666666554433222111 22345677777777743
No 232
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.27 E-value=0.004 Score=62.96 Aligned_cols=88 Identities=15% Similarity=0.230 Sum_probs=53.7
Q ss_pred CcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecchH-HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCC
Q 047214 122 RMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDKR-VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHC 198 (658)
Q Consensus 122 ~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~ 198 (658)
+++-++|+|+++..+ ....++..+.....+..+|++|.+.. +.......+..+.+.+++.+++.+.+.+.. .
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~- 186 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG----V- 186 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC----C-
Confidence 334566778887654 34444444433334566777777654 444444667899999999999998886542 1
Q ss_pred CchhHHHHHHHHHHcCCCcch
Q 047214 199 PEDLNWHSQRVVEYADGNPLV 219 (658)
Q Consensus 199 ~~~~~~~~~~i~~~~~g~Pla 219 (658)
.+. ...+..++|-|+.
T Consensus 187 ~~~-----~~~l~~~~g~p~~ 202 (325)
T PRK08699 187 AEP-----EERLAFHSGAPLF 202 (325)
T ss_pred CcH-----HHHHHHhCCChhh
Confidence 111 1123567888854
No 233
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.23 E-value=0.00096 Score=67.83 Aligned_cols=41 Identities=22% Similarity=0.019 Sum_probs=33.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhcc-ccCceEEEecccc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGRCFLSDIRK 91 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f~~~~~~~~~~~ 91 (658)
.-+.++|+|++|+|||||++.+++.+.. +|+..+|+..+++
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE 208 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE 208 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC
Confidence 4567889999999999999999998654 5998898885544
No 234
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.22 E-value=0.00036 Score=61.33 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=62.5
Q ss_pred ccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCC
Q 047214 31 VGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGA 110 (658)
Q Consensus 31 vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 110 (658)
||+...++++.+.+..-. .....|.|+|..|+||+++|+.++..-...... ++. +..... .
T Consensus 1 vG~S~~~~~l~~~l~~~a-~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~--~~~-~~~~~~-~-------------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA-KSSSPVLITGEPGTGKSLLARALHRYSGRANGP--FIV-IDCASL-P-------------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH-CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS---CCC-CCHHCT-C--------------
T ss_pred CCCCHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCC--eEE-echhhC-c--------------
Confidence 577888888888777543 445667899999999999999998864331111 111 110000 0
Q ss_pred CCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCC-CCCCEEEEEecch
Q 047214 111 NIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQF-GPGSRIVVTTRDK 161 (658)
Q Consensus 111 ~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~-~~~~~ilvttR~~ 161 (658)
.+.+.+ .+.--|+++|++... ....+...+... ....|+|+||+..
T Consensus 62 --~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp --HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred --HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 111111 256678899998765 344444444322 5678999999864
No 235
>PRK04132 replication factor C small subunit; Provisional
Probab=97.21 E-value=0.0051 Score=69.23 Aligned_cols=154 Identities=18% Similarity=0.190 Sum_probs=93.3
Q ss_pred EEc--CCCCcHHHHHHHHHHhh-ccccC-ceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCC
Q 047214 57 IWG--MGGIGKTTLATAIFNQF-SSEFE-GRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDV 132 (658)
Q Consensus 57 i~G--~~GvGKTtLa~~~~~~~-~~~f~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv 132 (658)
+.| |.++||||+|..++++. .+.+. .++-++ .++ ...++.+.+.+..... ....-..+..++|+|++
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN-ASd---~rgid~IR~iIk~~a~-----~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELN-ASD---ERGINVIREKVKEFAR-----TKPIGGASFKIIFLDEA 639 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe-CCC---cccHHHHHHHHHHHHh-----cCCcCCCCCEEEEEECc
Confidence 347 78899999999999984 33332 233343 222 1222333332221000 00000124579999999
Q ss_pred CCch--hhhhhhcccCCCCCCCEEEEEecch-HHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 047214 133 NEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRV 209 (658)
Q Consensus 133 ~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i 209 (658)
+... ....++..+-.-...+++|+++.+. .+.....+.+..+.+.+++.++..+.+...+...... -.++.+..|
T Consensus 640 D~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~e~L~~I 717 (846)
T PRK04132 640 DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAI 717 (846)
T ss_pred ccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHH
Confidence 8876 4566666554434567777766655 3444444678899999999999998887765433221 124468899
Q ss_pred HHHcCCCcchhH
Q 047214 210 VEYADGNPLVPK 221 (658)
Q Consensus 210 ~~~~~g~Plai~ 221 (658)
++.++|.+-...
T Consensus 718 a~~s~GDlR~AI 729 (846)
T PRK04132 718 LYIAEGDMRRAI 729 (846)
T ss_pred HHHcCCCHHHHH
Confidence 999999885443
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.20 E-value=0.0011 Score=64.50 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=29.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+..-+.++|.+|+|||.||.++++++.+..-.+.++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4557889999999999999999999775444455554
No 237
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.19 E-value=0.00019 Score=79.63 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=16.3
Q ss_pred CCccEEEeecCCc-c-ccccc-ccCCCCCCEEeccC
Q 047214 490 PNLETYLLDYTNF-A-CVPSS-IQNFKYLSALSFEG 522 (658)
Q Consensus 490 ~~L~~L~l~~~~~-~-~~~~~-~~~l~~L~~L~l~~ 522 (658)
.+|++|+|++... . ..|.. -..+|+|++|.+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~ 157 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG 157 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecC
Confidence 4566777766222 1 11111 23466666666665
No 238
>PRK06921 hypothetical protein; Provisional
Probab=97.19 E-value=0.00094 Score=65.54 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=29.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccc-cCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f~~~~~~~ 87 (658)
....+.++|.+|+|||+||.++++.+.+. ...++++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 35678999999999999999999997654 45556665
No 239
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.18 E-value=0.0005 Score=62.30 Aligned_cols=127 Identities=18% Similarity=0.132 Sum_probs=65.6
Q ss_pred cccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcC
Q 047214 30 LVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAG 109 (658)
Q Consensus 30 ~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 109 (658)
++|.+..++++.+.+..-. .....|.|+|..|+||+.+|+.+.+.-...-..-+-+. +..... -.+-.++++...
T Consensus 1 liG~s~~m~~~~~~~~~~a-~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vn-c~~~~~---~~~e~~LFG~~~ 75 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA-SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVN-CAALPE---ELLESELFGHEK 75 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT-TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEE-TTTS-H---HHHHHHHHEBCS
T ss_pred CEeCCHHHHHHHHHHHHHh-CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEe-hhhhhc---chhhhhhhcccc
Confidence 4788888888888887544 33456779999999999999999986322212222233 221111 123334444322
Q ss_pred CCC----chhHHHHhcCcceEEEEeCCCCchh--hhhhhcccCC------C-----CCCCEEEEEecch
Q 047214 110 ANI----PHFTKERVRRMKVLIVLDDVNEVGQ--LEGLIGELDQ------F-----GPGSRIVVTTRDK 161 (658)
Q Consensus 110 ~~~----~~~l~~~l~~~~~LlvlDdv~~~~~--~~~l~~~l~~------~-----~~~~~ilvttR~~ 161 (658)
... ....--.-+...--|+||+++.... -..|+..+.. . ....|||.||...
T Consensus 76 ~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 76 GAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp SSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 110 1111111223456789999988652 2233332211 1 1366889888854
No 240
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.17 E-value=0.00013 Score=68.53 Aligned_cols=178 Identities=17% Similarity=0.179 Sum_probs=98.3
Q ss_pred ccCCCCccEEeccCCCcccccC------CCcCCCccEEEeecCCcccccc-----c---------ccCCCCCCEEeccCC
Q 047214 464 KKEAFKLKSINLSHCRHFIDMS------YPSAPNLETYLLDYTNFACVPS-----S---------IQNFKYLSALSFEGC 523 (658)
Q Consensus 464 ~~~l~~L~~L~l~~~~~~~~~~------l~~l~~L~~L~l~~~~~~~~~~-----~---------~~~l~~L~~L~l~~~ 523 (658)
+-++++|+..++++|..-...| +++-+.|++|.+++|.++.+.. + ..+-|.|+++..+.|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 4567777777777776544444 6677778888887776654321 1 112344555555444
Q ss_pred CCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEccccccccc--c----ccccCCCCCCEEecCCCccch---
Q 047214 524 KSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEV--P----SSIECLTDLEVLDLRDCKRLK--- 594 (658)
Q Consensus 524 ~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~--~----~~~~~l~~L~~L~l~~~~~~~--- 594 (658)
.+...|... ......+..+|.++.+..|+|..- . ..+..+.+|+.|++..|....
T Consensus 168 -Rlengs~~~---------------~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 168 -RLENGSKEL---------------SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred -hhccCcHHH---------------HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH
Confidence 122111100 000112234677777777777621 1 125677888888888875321
Q ss_pred -hhhhhhcCCCCCcEEeccCCcCC----ccC----C--CCCCcccEEeccCCccccc------cCC----CCCCccEEec
Q 047214 595 -RISTRFCKLRSLVDLFLHGCLNL----QSL----P--ALPLCLKSLDLRDCKMLQS------LPE----LPSCLEALDL 653 (658)
Q Consensus 595 -~~~~~~~~l~~L~~L~l~~~~~l----~~l----~--~l~~~L~~L~l~~~~~l~~------i~~----~~~~L~~L~l 653 (658)
.+...+..++.|++|.+..|--- ..+ . ..|+ |..|...+|..-.. +|. .+|-|..|.+
T Consensus 232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~-l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ 310 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPN-LMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLER 310 (388)
T ss_pred HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCC-ccccccchhhhcCceeeeechhhhhhcccHHHHHHHH
Confidence 23344566777888888887511 111 1 3677 88888777753221 121 3445666666
Q ss_pred cCCCC
Q 047214 654 TSCNM 658 (658)
Q Consensus 654 ~~~~~ 658 (658)
.||.|
T Consensus 311 ngNr~ 315 (388)
T COG5238 311 NGNRI 315 (388)
T ss_pred ccCcc
Confidence 66653
No 241
>PRK06696 uridine kinase; Validated
Probab=97.14 E-value=0.00071 Score=64.92 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=36.7
Q ss_pred ccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 33 LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 33 R~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
|.+.+++|.+.+.....+++.+|+|.|.+|+||||+|+++++.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 55566777776654322668899999999999999999999987544
No 242
>PRK08118 topology modulation protein; Reviewed
Probab=97.14 E-value=0.00066 Score=61.65 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc---cccCceEE
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS---SEFEGRCF 85 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~---~~f~~~~~ 85 (658)
-|.|+|++|+||||+|+++++... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 478999999999999999999843 34666665
No 243
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.13 E-value=0.0024 Score=56.66 Aligned_cols=110 Identities=20% Similarity=0.163 Sum_probs=61.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHh-------hh----cCCCC---------
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKL-------EV----AGANI--------- 112 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l-------~~----~~~~~--------- 112 (658)
..|-|++..|.||||+|...+-+...+--.+.++--+...........+...- +. ...+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 46888999999999999999988554433333322111110111111111110 00 00001
Q ss_pred -chhHHHHhcC-cceEEEEeCCCCc-----hhhhhhhcccCCCCCCCEEEEEecchH
Q 047214 113 -PHFTKERVRR-MKVLIVLDDVNEV-----GQLEGLIGELDQFGPGSRIVVTTRDKR 162 (658)
Q Consensus 113 -~~~l~~~l~~-~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ilvttR~~~ 162 (658)
.+..++.+.. .-=|+|||++-.. .+.+.+...+.....+.-+|+|.|+.+
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2233344443 4569999998543 245566666666667889999999875
No 244
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.13 E-value=0.00089 Score=67.54 Aligned_cols=101 Identities=15% Similarity=0.162 Sum_probs=54.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCC
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDV 132 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv 132 (658)
..+.++|.+|+|||+||.++++.+.+....++++. .... +..+...- ...........+.+. .-=||||||+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t-~~~l-----~~~l~~~~-~~~~~~~~~~~~~l~-~~DLLIIDDl 255 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT-ADEL-----IEILREIR-FNNDKELEEVYDLLI-NCDLLIIDDL 255 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE-HHHH-----HHHHHHHH-hccchhHHHHHHHhc-cCCEEEEecc
Confidence 67999999999999999999999665555566665 2211 12222210 011000111123333 2357999999
Q ss_pred CCc--hhh--hhhhcccCCC-CCCCEEEEEecch
Q 047214 133 NEV--GQL--EGLIGELDQF-GPGSRIVVTTRDK 161 (658)
Q Consensus 133 ~~~--~~~--~~l~~~l~~~-~~~~~ilvttR~~ 161 (658)
... ..| +.+...+... ..+..+|+||...
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 332 222 2333333221 2345688888753
No 245
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.11 E-value=0.003 Score=62.24 Aligned_cols=124 Identities=23% Similarity=0.228 Sum_probs=68.1
Q ss_pred cccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh---hccccCceEEEeccccccccch---------h-
Q 047214 32 GLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ---FSSEFEGRCFLSDIRKNSETGG---------G- 98 (658)
Q Consensus 32 GR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~---~~~~f~~~~~~~~~~~~~~~~~---------~- 98 (658)
+|..+..--..+|.. ++...|.+.|.+|.|||.||.+++-. .++.|..++....+......-+ +
T Consensus 228 prn~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~ 304 (436)
T COG1875 228 PRNAEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMG 304 (436)
T ss_pred cccHHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhcc
Confidence 344444434444444 67899999999999999999887655 3445655554332222111111 0
Q ss_pred ---hHhHHHhh---hcCCCCchhHHHHh-------------cCc---ceEEEEeCCCCchhhhhhhcccCCCCCCCEEEE
Q 047214 99 ---KILSEKLE---VAGANIPHFTKERV-------------RRM---KVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVV 156 (658)
Q Consensus 99 ---~~l~~~l~---~~~~~~~~~l~~~l-------------~~~---~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilv 156 (658)
+.+.+.+. ...+...+.+...+ +++ +-++|+|++.+... ..+...+...+.|+||+.
T Consensus 305 PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp-heikTiltR~G~GsKIVl 383 (436)
T COG1875 305 PWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP-HELKTILTRAGEGSKIVL 383 (436)
T ss_pred chHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH-HHHHHHHHhccCCCEEEE
Confidence 11111111 11111122333332 232 57899999987653 334455556788999988
Q ss_pred Eec
Q 047214 157 TTR 159 (658)
Q Consensus 157 ttR 159 (658)
|.-
T Consensus 384 ~gd 386 (436)
T COG1875 384 TGD 386 (436)
T ss_pred cCC
Confidence 865
No 246
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=97.07 E-value=0.0074 Score=61.36 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=36.3
Q ss_pred cccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 30 LVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 30 ~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
++|+...++++.+.+..-. .....|.|+|..|+||+++|+.+...
T Consensus 1 liG~S~~m~~~~~~~~~~a-~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA-PLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh-CCCCCEEEECCCCChHHHHHHHHHHh
Confidence 4788888888888777543 34556889999999999999999876
No 247
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.06 E-value=0.0077 Score=58.79 Aligned_cols=164 Identities=20% Similarity=0.227 Sum_probs=93.3
Q ss_pred CCCcccccchHhhHHHHhcccC-CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccc--hh-hHhH
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDL-SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETG--GG-KILS 102 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~-~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~--~~-~~l~ 102 (658)
--.++|-.++.+++..|+.... .++...|.|.|+.|.|||+|......+ .+.+.....+..+....... .+ .+..
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITR 101 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHH
Confidence 4469999999999999997431 155678899999999999999888877 33344444443344332221 22 1111
Q ss_pred HH---hhhcC---CCC---chhHHHHhcCc------ceEEEEeCCCCchh------hhhhhccc-CCCCCCCEEEEEecc
Q 047214 103 EK---LEVAG---ANI---PHFTKERVRRM------KVLIVLDDVNEVGQ------LEGLIGEL-DQFGPGSRIVVTTRD 160 (658)
Q Consensus 103 ~~---l~~~~---~~~---~~~l~~~l~~~------~~LlvlDdv~~~~~------~~~l~~~l-~~~~~~~~ilvttR~ 160 (658)
+. +.... ... ...+.+.|+.+ +.++|+|+++--.. +..+.... ....|-|-|-+|||-
T Consensus 102 ql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 102 QLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 11 11111 111 33444444432 68888888754321 11222211 112355566789986
Q ss_pred hH-------HHHhhcCCCceEEcCCCChHHHHHHHHHHh
Q 047214 161 KR-------VLEKFRGEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 161 ~~-------~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
.- |-+.. ....++-++.+..++..+++++..
T Consensus 182 d~lE~LEKRVKSRF-shr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 182 DILELLEKRVKSRF-SHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cHHHHHHHHHHhhc-ccceeeccCCCChHHHHHHHHHHh
Confidence 52 22222 334466667888888888887765
No 248
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.05 E-value=0.00078 Score=63.01 Aligned_cols=99 Identities=20% Similarity=0.242 Sum_probs=53.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHh---------
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERV--------- 120 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l--------- 120 (658)
++.++..|.|++|+|||+++..+.+.+...-..+++.. +.......+.+..+. ....+...+
T Consensus 16 ~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-----pT~~Aa~~L~~~~~~----~a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 16 SGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-----PTNKAAKELREKTGI----EAQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-----SSHHHHHHHHHHHTS-----EEEHHHHTTEECCEECC
T ss_pred cCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-----CcHHHHHHHHHhhCc----chhhHHHHHhcCCccccc
Confidence 34578889999999999999998887666533334333 111111222222110 011222221
Q ss_pred ----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEec
Q 047214 121 ----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTR 159 (658)
Q Consensus 121 ----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR 159 (658)
..+.-++|+|++.... .+..++.... ..+.++|+.-=
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD 129 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGD 129 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECC
Confidence 1234699999997765 5666666655 25778777653
No 249
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.04 E-value=0.00062 Score=68.40 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=42.8
Q ss_pred CcccccchHhhHHHHhcccC---CCCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 29 GLVGLNSRIEQIKPFLCMDL---SDTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~~~---~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
.++|.++.++++.+++.... +...+++.|+|++|+||||+|..+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 79999999999999997532 135689999999999999999999998654
No 250
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.01 E-value=3.9e-05 Score=64.31 Aligned_cols=99 Identities=16% Similarity=0.219 Sum_probs=52.1
Q ss_pred ccceEEecccCCCCCCCCC----CCCCccEEEecCCCccccccccc-CCCCccEEeccCCCcccccC--CCcCCCccEEE
Q 047214 424 NLRYLHWDKYPLRTLPSNF----KPENLVELNLHFSKVEQLWEGKK-EAFKLKSINLSHCRHFIDMS--YPSAPNLETYL 496 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~----~l~~L~~L~L~~~~i~~l~~~~~-~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~ 496 (658)
.+..++|+.|.+-.++... ...+|...+|++|.+...|..+. +++.++.|++++| .+.++| +..|+.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 3444555555555444432 34555556666666665555533 2335555555555 455555 55555555555
Q ss_pred eecCCcccccccccCCCCCCEEeccCC
Q 047214 497 LDYTNFACVPSSIQNFKYLSALSFEGC 523 (658)
Q Consensus 497 l~~~~~~~~~~~~~~l~~L~~L~l~~~ 523 (658)
++.|.+...|..+..+.++-.|+..+|
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCC
Confidence 555555555544444444444444443
No 251
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.99 E-value=0.0006 Score=58.37 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+|+|.|++|+||||+|+++++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999975
No 252
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0065 Score=63.83 Aligned_cols=130 Identities=19% Similarity=0.221 Sum_probs=77.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeC
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDD 131 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDd 131 (658)
+.=|.++|++|+|||-||+++++..+-.|-.+ ++-+++..+.++..-.....+.+.=...+++|++|.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisV------------KGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDE 612 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISV------------KGPELLNKYVGESERAVRQVFQRARASAPCVIFFDE 612 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEee------------cCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecc
Confidence 45678999999999999999999877665211 111444444443321112222223334689999999
Q ss_pred CCCch-------------hhhhhhcccCCC--CCCCEEEEEecchH-HHHhhcC---CCceEEcCCCChHHHHHHHHHHh
Q 047214 132 VNEVG-------------QLEGLIGELDQF--GPGSRIVVTTRDKR-VLEKFRG---EKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 132 v~~~~-------------~~~~l~~~l~~~--~~~~~ilvttR~~~-~~~~~~~---~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
++... ...+++..+... ..|.-||-.|..++ +..++.. -....-++.=..+|-.+.++...
T Consensus 613 iDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 613 IDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred hhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHh
Confidence 85432 245566655432 24555666665554 4444422 24466666667778888887776
Q ss_pred c
Q 047214 193 F 193 (658)
Q Consensus 193 ~ 193 (658)
.
T Consensus 693 k 693 (802)
T KOG0733|consen 693 K 693 (802)
T ss_pred c
Confidence 4
No 253
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0078 Score=62.20 Aligned_cols=148 Identities=21% Similarity=0.254 Sum_probs=78.2
Q ss_pred Ccccccc---hHhhHHHHhcccC------CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhh
Q 047214 29 GLVGLNS---RIEQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGK 99 (658)
Q Consensus 29 ~~vGR~~---~~~~l~~~l~~~~------~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 99 (658)
+.-|-|+ |+++|..+|.+.. +.=++=|.++|++|.|||-||++++....-.| +......++..-+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF-----F~~sGSEFdEm~V- 378 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF-----FYASGSEFDEMFV- 378 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe-----Eeccccchhhhhh-
Confidence 3445554 5566777776532 12256788999999999999999998754332 2223333432211
Q ss_pred HhHHHhhhcCCCCchhHHHHh----cCcceEEEEeCCCCch-------------hhhhhhcccCCCC--CCCEEEEEecc
Q 047214 100 ILSEKLEVAGANIPHFTKERV----RRMKVLIVLDDVNEVG-------------QLEGLIGELDQFG--PGSRIVVTTRD 160 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~~-------------~~~~l~~~l~~~~--~~~~ilvttR~ 160 (658)
+ -+ ++++++.. +.-+++|++|+++..- .+.+++....... .|.-||-.|..
T Consensus 379 ------G-vG---ArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 379 ------G-VG---ARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred ------c-cc---HHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 0 00 33333333 3458999999985431 3455555544333 33333434544
Q ss_pred hH-HHHhhc--CC-CceEEcCCCChHHHHHHHHHHh
Q 047214 161 KR-VLEKFR--GE-KKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 161 ~~-~~~~~~--~~-~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
++ ..+++. +. ...+.+..-+..--.+.|..+.
T Consensus 449 pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 449 PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 43 344431 22 3344454444443344554444
No 254
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.99 E-value=0.0043 Score=69.08 Aligned_cols=148 Identities=18% Similarity=0.209 Sum_probs=77.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCC
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDV 132 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv 132 (658)
+-+.++|++|+|||++|+.++....-.| +.+. ... ......+.......+.+...-...+.+|++|++
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~--------~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEi 253 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD--------FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEI 253 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH--------hHHhhhcccHHHHHHHHHHHHhcCCcEEEehhH
Confidence 4488999999999999999998765443 1121 111 000011110000122233333456899999998
Q ss_pred CCch------------h----hhhhhcccCCC--CCCCEEEEEecchHH-HHhhc---CCCceEEcCCCChHHHHHHHHH
Q 047214 133 NEVG------------Q----LEGLIGELDQF--GPGSRIVVTTRDKRV-LEKFR---GEKKIYRVNGLEFEEAFEHFCN 190 (658)
Q Consensus 133 ~~~~------------~----~~~l~~~l~~~--~~~~~ilvttR~~~~-~~~~~---~~~~~~~l~~L~~~~~~~l~~~ 190 (658)
+... . ...++..+... ..+.-+|.||..++. ..... ...+.+.+..-+.++-.+++..
T Consensus 254 D~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~ 333 (644)
T PRK10733 254 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKV 333 (644)
T ss_pred hhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHH
Confidence 6641 1 22232222211 233445557766543 22221 2356788888888888888877
Q ss_pred HhcCCCCCCchhHHHHHHHHHHcCC
Q 047214 191 FAFEENHCPEDLNWHSQRVVEYADG 215 (658)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~g 215 (658)
+........+. ....+++.+.|
T Consensus 334 ~~~~~~l~~~~---d~~~la~~t~G 355 (644)
T PRK10733 334 HMRRVPLAPDI---DAAIIARGTPG 355 (644)
T ss_pred HhhcCCCCCcC---CHHHHHhhCCC
Confidence 65332211111 13446666666
No 255
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0055 Score=67.10 Aligned_cols=181 Identities=16% Similarity=0.164 Sum_probs=100.2
Q ss_pred CCCCcccccchHhhH---HHHhcccC-----C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccc
Q 047214 26 SSNGLVGLNSRIEQI---KPFLCMDL-----S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETG 96 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l---~~~l~~~~-----~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 96 (658)
.=.++.|-|+..++| +++|.+.. + .-++=+.++|++|+|||-||++++....-.| +......+
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF-----~svSGSEF--- 380 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF-----FSVSGSEF--- 380 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCce-----eeechHHH---
Confidence 335677877655555 44555321 1 3356688999999999999999998754333 22111111
Q ss_pred hhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-----------------hhhhhhcccCCCCCCCEE--EEE
Q 047214 97 GGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-----------------QLEGLIGELDQFGPGSRI--VVT 157 (658)
Q Consensus 97 ~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------------~~~~l~~~l~~~~~~~~i--lvt 157 (658)
+.-..+.......+.+...=+..+.++.+|+++... .+.+++........+..+ +-+
T Consensus 381 ----vE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~ 456 (774)
T KOG0731|consen 381 ----VEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAA 456 (774)
T ss_pred ----HHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEec
Confidence 111111110000222222223457899999885421 245555554433333333 344
Q ss_pred ecchHH-HHhh---cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 158 TRDKRV-LEKF---RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 158 tR~~~~-~~~~---~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
|+..++ ..+. ..-.+.+.++.=+.....+.|.-++..-... .+..++.+ |+..+.|.+=|.
T Consensus 457 tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 457 TNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 554443 3332 2335577888778888888888777443332 33344455 999999988553
No 256
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0044 Score=56.04 Aligned_cols=132 Identities=16% Similarity=0.109 Sum_probs=65.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEec-ccccccc-chhhHhHHHhhhcCC-CCchhHHHHhcCcceEEEE
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSD-IRKNSET-GGGKILSEKLEVAGA-NIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~~~~-~~~~~l~~~l~~~~~-~~~~~l~~~l~~~~~Llvl 129 (658)
+.|.++|.+|+||||+|+++++..++.-..++-+.. ....... ..+-+..+.-+.... ...+.+...++ ++++|.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk--n~~VIv 79 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK--NYLVIV 79 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc--ceEEEE
Confidence 468899999999999999999987765444443331 0000000 011111111111100 00223333343 899999
Q ss_pred eCCCCchhhh-hhhcccCCCCCCCEEEEEecchHHHHhhcCCCceEEcCCCChHHHHHHHHH
Q 047214 130 DDVNEVGQLE-GLIGELDQFGPGSRIVVTTRDKRVLEKFRGEKKIYRVNGLEFEEAFEHFCN 190 (658)
Q Consensus 130 Ddv~~~~~~~-~l~~~l~~~~~~~~ilvttR~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~ 190 (658)
||..-+...+ ++............||-+--..+.+-.. ..-+-+|..++-..+++.+
T Consensus 80 DdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rr----N~ergepip~Evl~qly~R 137 (261)
T COG4088 80 DDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRR----NRERGEPIPEEVLRQLYDR 137 (261)
T ss_pred ecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHh----hccCCCCCCHHHHHHHHHh
Confidence 9998776432 3332223334444555554433433332 1223345555544455444
No 257
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0054 Score=65.53 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=90.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeC
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDD 131 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDd 131 (658)
..-|.++|++|+|||-||.+++....-+| ++ .++-+++...++..++...+.+.+.-.-+++++.+|+
T Consensus 701 ~~giLLyGppGcGKT~la~a~a~~~~~~f-----is-------vKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDE 768 (952)
T KOG0735|consen 701 RTGILLYGPPGCGKTLLASAIASNSNLRF-----IS-------VKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDE 768 (952)
T ss_pred ccceEEECCCCCcHHHHHHHHHhhCCeeE-----EE-------ecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEecc
Confidence 34578999999999999999998643222 22 1222677777777766666666666677999999999
Q ss_pred CCCch-------------hhhhhhcccCCC--CCCCEEE-EEecchHHHHhhcCC--Cc-eEEcCCCChHHHHHHHHHHh
Q 047214 132 VNEVG-------------QLEGLIGELDQF--GPGSRIV-VTTRDKRVLEKFRGE--KK-IYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 132 v~~~~-------------~~~~l~~~l~~~--~~~~~il-vttR~~~~~~~~~~~--~~-~~~l~~L~~~~~~~l~~~~~ 192 (658)
+++.. ...+++..+... ..|.-|+ .|||..-+..++.++ .. .+.-+.-+..+-.+.|....
T Consensus 769 fdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 769 FDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred ccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 96632 256666665421 2454555 356655444444222 22 22233334555566665544
Q ss_pred cCCCCCCchhHHHHHHHHHHcCCCcch
Q 047214 193 FEENHCPEDLNWHSQRVVEYADGNPLV 219 (658)
Q Consensus 193 ~~~~~~~~~~~~~~~~i~~~~~g~Pla 219 (658)
..-..+. .-..+.++.+++|.--|
T Consensus 849 ~s~~~~~---~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 849 NSLLKDT---DVDLECLAQKTDGFTGA 872 (952)
T ss_pred hccCCcc---ccchHHHhhhcCCCchh
Confidence 2111111 11256677777776543
No 258
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.93 E-value=0.0024 Score=61.98 Aligned_cols=42 Identities=21% Similarity=0.472 Sum_probs=33.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKN 92 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 92 (658)
+-+-++|.|.+|+|||+|+..+++..+.+|+..+++..+.+-
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer 109 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER 109 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC
Confidence 345788999999999999999999988777766666545543
No 259
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.93 E-value=0.0013 Score=61.28 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=45.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhh---HhHHHhhhc------CCCCchhHHHHhc-
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGK---ILSEKLEVA------GANIPHFTKERVR- 121 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~---~l~~~l~~~------~~~~~~~l~~~l~- 121 (658)
++++.++|+.|+||||.+.+++...+..-..+..++ -+.+.....+ ...+.++.. ..+..+.+.+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis--~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS--ADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE--ESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec--CCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 478999999999999999999998665534444444 2223333333 444444432 1112333444443
Q ss_pred --C-cceEEEEeCC
Q 047214 122 --R-MKVLIVLDDV 132 (658)
Q Consensus 122 --~-~~~LlvlDdv 132 (658)
. +.=++++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 2 2358888976
No 260
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=4e-05 Score=72.00 Aligned_cols=97 Identities=23% Similarity=0.191 Sum_probs=74.2
Q ss_pred CCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccc--c
Q 047214 385 MSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLW--E 462 (658)
Q Consensus 385 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~--~ 462 (658)
+.+.+.|++.|+.+..+.++ ..++ .|++|.|+-|+|+++.+...|.+|+.|.|..|.|..+- .
T Consensus 18 l~~vkKLNcwg~~L~DIsic--------------~kMp-~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC--------------EKMP-LLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELE 82 (388)
T ss_pred HHHhhhhcccCCCccHHHHH--------------Hhcc-cceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHH
Confidence 45677888888887544332 3455 88999999999999888888999999999999888653 3
Q ss_pred cccCCCCccEEeccCCCcccccC-------CCcCCCccEEE
Q 047214 463 GKKEAFKLKSINLSHCRHFIDMS-------YPSAPNLETYL 496 (658)
Q Consensus 463 ~~~~l~~L~~L~l~~~~~~~~~~-------l~~l~~L~~L~ 496 (658)
.++++++|+.|.|..|+-...-+ +.-+|+|+.||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 47889999999998887555544 56678888775
No 261
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.89 E-value=0.0021 Score=58.45 Aligned_cols=78 Identities=18% Similarity=0.164 Sum_probs=46.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc-cccCceEEEeccccccccchh-hHhHHHhhhcCCCCchhHHHHhcCcceEEEE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS-SEFEGRCFLSDIRKNSETGGG-KILSEKLEVAGANIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~l~~~l~~~~~Llvl 129 (658)
..++.+.|++|+|||.+|+.+++.+. +.....+-+. .......... ..+....+..... .. ....-+++|
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d-~s~~~~~~~~~~~~~~l~~~~~~~----v~---~~~~gVVll 74 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID-MSEYSEGDDVESSVSKLLGSPPGY----VG---AEEGGVVLL 74 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE-GGGHCSHHHCSCHCHHHHHHTTCH----HH---HHHHTEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh-hhcccccchHHhhhhhhhhcccce----ee---ccchhhhhh
Confidence 46789999999999999999999977 5555555555 4433331111 2223322222110 00 011229999
Q ss_pred eCCCCchh
Q 047214 130 DDVNEVGQ 137 (658)
Q Consensus 130 Ddv~~~~~ 137 (658)
|+++....
T Consensus 75 DEidKa~~ 82 (171)
T PF07724_consen 75 DEIDKAHP 82 (171)
T ss_dssp ETGGGCSH
T ss_pred HHHhhccc
Confidence 99987654
No 262
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.89 E-value=0.0043 Score=63.62 Aligned_cols=111 Identities=10% Similarity=0.166 Sum_probs=68.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccch-hhHhHH-HhhhcCCCCchhHHHHhcCcceEEE
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGG-GKILSE-KLEVAGANIPHFTKERVRRMKVLIV 128 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~~l~~-~l~~~~~~~~~~l~~~l~~~~~Llv 128 (658)
....+.|.|+.|+||||+++.+...+.......++...-+....... ...+.+ -.+....+..+.++..++..+=.|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 35789999999999999999998876655445555431211111110 011111 0111122236667788899999999
Q ss_pred EeCCCCchhhhhhhcccCCCCCCCEEEEEecchHHH
Q 047214 129 LDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRVL 164 (658)
Q Consensus 129 lDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~~ 164 (658)
+|++.+.+.+...+... ..|..++.|.......
T Consensus 201 vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 201 IGEMRDLETVELALTAA---ETGHLVFGTLHTNSAA 233 (343)
T ss_pred EeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCCHH
Confidence 99999888766544432 3466677777765443
No 263
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.88 E-value=0.0033 Score=59.71 Aligned_cols=38 Identities=18% Similarity=0.291 Sum_probs=32.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
....++.|+|++|+|||+++.+++.........++|+.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 45689999999999999999999988665567788887
No 264
>PRK14974 cell division protein FtsY; Provisional
Probab=96.88 E-value=0.015 Score=58.72 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
++.++.++|++|+||||++..++..+.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999876654
No 265
>PRK07667 uridine kinase; Provisional
Probab=96.87 E-value=0.0023 Score=59.82 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=33.4
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
++++.+.+.... +...+|+|.|.+|+||||+|..+.+.+.+.
T Consensus 3 ~~~~~~~~~~~~-~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 3 TNELINIMKKHK-ENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHHhcC-CCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456666666544 556899999999999999999999987654
No 266
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.006 Score=65.30 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=92.3
Q ss_pred CCCCcccccchHhhHHHHhccc---CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhH
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILS 102 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~---~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 102 (658)
-++.=+|.++..+.|.+++.-. .+-+-+++.++|++|||||++|+.+++.....|-. ++ +....+...+
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR---fS-vGG~tDvAeI---- 480 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFR---FS-VGGMTDVAEI---- 480 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEE---Ee-ccccccHHhh----
Confidence 3456789999999999988732 12456899999999999999999999996655421 22 4444443322
Q ss_pred HHhhhcCC---CCchhHHHHh---cCcceEEEEeCCCCch------hhhhhhcccCC-C------------CCCCEEEE-
Q 047214 103 EKLEVAGA---NIPHFTKERV---RRMKVLIVLDDVNEVG------QLEGLIGELDQ-F------------GPGSRIVV- 156 (658)
Q Consensus 103 ~~l~~~~~---~~~~~l~~~l---~~~~~LlvlDdv~~~~------~~~~l~~~l~~-~------------~~~~~ilv- 156 (658)
=++... ....++.+.| +-.+=|+.+|.|+..- .-..++..+.. + -.-++|++
T Consensus 481 --kGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 481 --KGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred --cccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 111100 0033333433 3456788899986432 12222222211 0 12345653
Q ss_pred Eecch--HHHHhhcCCCceEEcCCCChHHHHHHHHHHh
Q 047214 157 TTRDK--RVLEKFRGEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 157 ttR~~--~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
+|-|. .+...+...-..|++.+...+|-.+.-++++
T Consensus 559 cTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 34332 1111122445799999999999888777665
No 267
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.86 E-value=0.0066 Score=56.40 Aligned_cols=120 Identities=21% Similarity=0.240 Sum_probs=71.0
Q ss_pred CCCCCCCcccccchHhhHHHHhcc-cCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHh
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCM-DLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~-~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 101 (658)
+++.-..++|.|...+.+.+--.. ..+-...-|.++|.-|+|||+|++++...+...+-..+-+. ... +.-
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~---k~d----l~~- 126 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVD---KED----LAT- 126 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEc---HHH----Hhh-
Confidence 334446689988887777652221 01134567889999999999999999999776654433332 110 000
Q ss_pred HHHhhhcCCCCchhHHHHhc--CcceEEEEeCC--CC-chhhhhhhcccCC---CCCCCEEEEEecch
Q 047214 102 SEKLEVAGANIPHFTKERVR--RMKVLIVLDDV--NE-VGQLEGLIGELDQ---FGPGSRIVVTTRDK 161 (658)
Q Consensus 102 ~~~l~~~~~~~~~~l~~~l~--~~~~LlvlDdv--~~-~~~~~~l~~~l~~---~~~~~~ilvttR~~ 161 (658)
.-.+.+.|+ ..+++|..||+ +. ...++.+...+.. ..+..-++..|.|+
T Consensus 127 -----------Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 127 -----------LPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -----------HHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 223334444 46899999997 33 3345565555432 22444455555554
No 268
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.86 E-value=0.0046 Score=59.49 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=37.4
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..|.+.|...- ....++.|+|.+|+|||++|.+++.........++|+.
T Consensus 10 ~~lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 10 KMLDELLGGGF-ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 44555554332 45679999999999999999999998655567778877
No 269
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.84 E-value=0.0057 Score=67.03 Aligned_cols=51 Identities=22% Similarity=0.277 Sum_probs=41.9
Q ss_pred CCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 25 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 25 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.....++|.+..++++.+.+..-. .....|.|+|..|+|||++|+.+++.-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVA-RSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHh-CcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999999887543 345567899999999999999999873
No 270
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.83 E-value=0.0049 Score=58.94 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=36.3
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..|.+.+...- ....++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 6 ~~LD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGV-ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 44555554322 45679999999999999999999998655555677775
No 271
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.013 Score=59.61 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=28.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+.++++++|++|+||||++..++..+...-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4579999999999999999999988654433344443
No 272
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.82 E-value=0.0053 Score=55.51 Aligned_cols=34 Identities=24% Similarity=0.365 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
++.|+|.+|+|||+++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999998665545566655
No 273
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.81 E-value=0.0042 Score=60.94 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=65.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLD 130 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlD 130 (658)
..+++.|.|..|.||||++..+...+...-..++.+.+-.+.. ......+ +.-...+.+..+.++..++..+=.++++
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~-~~~~~q~-~v~~~~~~~~~~~l~~~lR~~PD~i~vg 156 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ-IPGINQV-QVNEKAGLTFARGLRAILRQDPDIIMVG 156 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec-CCCceEE-EeCCcCCcCHHHHHHHHhccCCCEEEec
Confidence 4568999999999999999999887644222334333222211 1111000 0001111223677888888899999999
Q ss_pred CCCCchhhhhhhcccCCCCCCCEEEEEecchHHHH
Q 047214 131 DVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRVLE 165 (658)
Q Consensus 131 dv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~~~ 165 (658)
++.+.+....++.... .|..++-|.....+..
T Consensus 157 EiR~~e~a~~~~~aa~---tGh~v~tTlHa~~~~~ 188 (264)
T cd01129 157 EIRDAETAEIAVQAAL---TGHLVLSTLHTNDAPG 188 (264)
T ss_pred cCCCHHHHHHHHHHHH---cCCcEEEEeccCCHHH
Confidence 9999887665554432 3444666666554333
No 274
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0062 Score=66.20 Aligned_cols=153 Identities=20% Similarity=0.213 Sum_probs=89.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~Llvl 129 (658)
...+.+.++|++|.|||.||++++......|-.+..- +++...++.......+.+...-+..+..|++
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~------------~l~sk~vGesek~ir~~F~~A~~~~p~iiFi 341 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS------------ELLSKWVGESEKNIRELFEKARKLAPSIIFI 341 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH------------HHhccccchHHHHHHHHHHHHHcCCCcEEEE
Confidence 3456899999999999999999999765555332211 2222222322222234455555678999999
Q ss_pred eCCCCch-------------hhhhhhcccCCCC--CCCEEEEEecchH-HHHhhc---CCCceEEcCCCChHHHHHHHHH
Q 047214 130 DDVNEVG-------------QLEGLIGELDQFG--PGSRIVVTTRDKR-VLEKFR---GEKKIYRVNGLEFEEAFEHFCN 190 (658)
Q Consensus 130 Ddv~~~~-------------~~~~l~~~l~~~~--~~~~ilvttR~~~-~~~~~~---~~~~~~~l~~L~~~~~~~l~~~ 190 (658)
|+++... ....++..+.... .+..+|-+|..+. +...+. .-...+.+.+-+.++..+.|+.
T Consensus 342 DEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~ 421 (494)
T COG0464 342 DEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKI 421 (494)
T ss_pred EchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHH
Confidence 9995432 1333444443222 3334455554443 222221 2356888899999999999999
Q ss_pred HhcCCCCCCchhHHHHHHHHHHcCC
Q 047214 191 FAFEENHCPEDLNWHSQRVVEYADG 215 (658)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~i~~~~~g 215 (658)
+....... -...-..+.+++.+.|
T Consensus 422 ~~~~~~~~-~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 422 HLRDKKPP-LAEDVDLEELAEITEG 445 (494)
T ss_pred HhcccCCc-chhhhhHHHHHHHhcC
Confidence 87533221 0111235666666666
No 275
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.77 E-value=0.0065 Score=68.73 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=71.9
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhH-HHhh
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILS-EKLE 106 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~-~~l~ 106 (658)
..++|+...++.+.+.+..-. .....|.|+|..|+|||++|+.+...-...-...+.+. +..... ..+. ..++
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a-~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~-c~~~~~----~~~~~~lfg 449 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA-QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMN-CAAMPA----GLLESDLFG 449 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh-CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEe-cccCCh----hHhhhhhcC
Confidence 469999999999887776433 34557889999999999999999987432222333333 221111 1111 1222
Q ss_pred hcCCCC----chhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCC-----------CCCCEEEEEecch
Q 047214 107 VAGANI----PHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQF-----------GPGSRIVVTTRDK 161 (658)
Q Consensus 107 ~~~~~~----~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~-----------~~~~~ilvttR~~ 161 (658)
...... .......-....-.|+||+|+... ....++..+... ..+.|||.||...
T Consensus 450 ~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 450 HERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred cccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 211100 111111112335679999998765 234444443221 1355888888654
No 276
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.76 E-value=0.058 Score=58.04 Aligned_cols=176 Identities=15% Similarity=0.160 Sum_probs=100.4
Q ss_pred HHHHHHHhhhhcccCCCCCCCcccccchHhhHHHHhcccC--CCCeEEEEEEcCCCCcHHHHHHHHHHhhc--------c
Q 047214 9 IVEDVLKNLEKATVATDSSNGLVGLNSRIEQIKPFLCMDL--SDTVQIVGIWGMGGIGKTTLATAIFNQFS--------S 78 (658)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~l~~~~--~~~~~vv~i~G~~GvGKTtLa~~~~~~~~--------~ 78 (658)
..++...+++.+ ..+..+=+|+.|..+|.+++...- .+....+-|+|.+|+|||+.+..+.+..+ .
T Consensus 381 ~l~~ara~Lhls----~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p 456 (767)
T KOG1514|consen 381 ELSKARARLHLS----AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP 456 (767)
T ss_pred HHHHHHHHhHHh----hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCC
Confidence 344444556655 234568899999999999887421 13445888999999999999999999743 2
Q ss_pred ccCceEEEeccccccccchhhHhHHHhhh-cCCCC-----chhHHHHhc-----CcceEEEEeCCCCchh-hhhhhcc-c
Q 047214 79 EFEGRCFLSDIRKNSETGGGKILSEKLEV-AGANI-----PHFTKERVR-----RMKVLIVLDDVNEVGQ-LEGLIGE-L 145 (658)
Q Consensus 79 ~f~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~-----~~~l~~~l~-----~~~~LlvlDdv~~~~~-~~~l~~~-l 145 (658)
.|+++- +....-.... ++...++.. .++.. .+.+..+.. ...+++++|+++..-. -+.++.. +
T Consensus 457 ~f~yve-INgm~l~~~~---~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~f 532 (767)
T KOG1514|consen 457 KFDYVE-INGLRLASPR---EIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIF 532 (767)
T ss_pred CccEEE-EcceeecCHH---HHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHh
Confidence 344332 2212111111 222222221 11111 344444443 3479999999866542 1222222 2
Q ss_pred -CCCCCCCEEEEEecch--H---------HHHhhcCCCceEEcCCCChHHHHHHHHHHhcC
Q 047214 146 -DQFGPGSRIVVTTRDK--R---------VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFE 194 (658)
Q Consensus 146 -~~~~~~~~ilvttR~~--~---------~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~ 194 (658)
+...++++++|.+=.. . +.+.+ ..+.+.+.|.+.++-.+....++.+
T Consensus 533 dWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRl--g~tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 533 DWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRL--GLTRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred cCCcCCCCceEEEEecccccCHHHHhccchhhhc--cceeeecCCCCHHHHHHHHHHhhcc
Confidence 2235677776544221 1 22222 3457788899998888888777644
No 277
>PRK04296 thymidine kinase; Provisional
Probab=96.75 E-value=0.0048 Score=57.41 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=56.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEec-cccccccchhhHhHHHhhhcCC----CCchhHHHHhc---Ccc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSD-IRKNSETGGGKILSEKLEVAGA----NIPHFTKERVR---RMK 124 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~----~~~~~l~~~l~---~~~ 124 (658)
.++.++|+.|.||||+|..++.+...+...++++.. ..... ....+.+.++..-. .....+.+.++ ++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~---~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRY---GEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccc---cCCcEecCCCCcccceEeCChHHHHHHHHhhCCCC
Confidence 477899999999999999999987655444444421 11111 01111111111000 11222222222 244
Q ss_pred eEEEEeCCCCc--hhhhhhhcccCCCCCCCEEEEEecch
Q 047214 125 VLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK 161 (658)
Q Consensus 125 ~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilvttR~~ 161 (658)
-+||+|.+.-. ++...+...+. ..|..|++|.++.
T Consensus 80 dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~ 116 (190)
T PRK04296 80 DCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT 116 (190)
T ss_pred CEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence 58999998554 22333433322 4678899998873
No 278
>PRK07261 topology modulation protein; Provisional
Probab=96.73 E-value=0.0031 Score=57.58 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.|+|+|++|+||||||+++++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998773
No 279
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0075 Score=59.74 Aligned_cols=55 Identities=24% Similarity=0.372 Sum_probs=39.3
Q ss_pred CCcccccchHhhHHHHhcccC-----------CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCc
Q 047214 28 NGLVGLNSRIEQIKPFLCMDL-----------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEG 82 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~-----------~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~ 82 (658)
..+-|-+..++++.+.+.-.. -...+-|.++|++|.|||-+|++++.+....|-.
T Consensus 92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn 157 (386)
T KOG0737|consen 92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN 157 (386)
T ss_pred hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcce
Confidence 345566666666666544210 0345678899999999999999999998777744
No 280
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.70 E-value=0.0035 Score=63.79 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=39.0
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
..++|++..++++.+.+..-. .....|.|+|..|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a-~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLA-PLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 458999999999998887544 34556889999999999999999865
No 281
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.65 E-value=0.014 Score=52.42 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=60.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHH------hhh----cCCCC---------
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEK------LEV----AGANI--------- 112 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~------l~~----~~~~~--------- 112 (658)
...|-|++..|.||||.|...+-+...+--.+..+--+...........+... .+. ...+.
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 46788888899999999999998855443333222101111001111111110 000 00000
Q ss_pred -chhHHHHhcC-cceEEEEeCCCCc-----hhhhhhhcccCCCCCCCEEEEEecchH
Q 047214 113 -PHFTKERVRR-MKVLIVLDDVNEV-----GQLEGLIGELDQFGPGSRIVVTTRDKR 162 (658)
Q Consensus 113 -~~~l~~~l~~-~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ilvttR~~~ 162 (658)
-+..++.+.. .-=++|||++-.. -+.+.+...+....++.-+|+|-|+.+
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 2333444444 4569999998433 345566666665567889999999874
No 282
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.65 E-value=0.0077 Score=58.00 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=35.1
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc------CceEEEe
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF------EGRCFLS 87 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f------~~~~~~~ 87 (658)
..+.+.|...- ....++.|+|++|+|||++|.+++....... ..++|+.
T Consensus 6 ~~lD~~l~GG~-~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 6 KALDELLGGGI-PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHHhCCCC-cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34455554322 4567999999999999999999998754443 5567766
No 283
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=96.63 E-value=0.0081 Score=65.28 Aligned_cols=51 Identities=24% Similarity=0.279 Sum_probs=42.9
Q ss_pred CCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....++|+...++++.+.+..-. .....|.|+|..|+|||++|+.+...-.
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a-~~~~pVlI~Ge~GtGK~~~A~~ih~~s~ 235 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA-ASDLNVLILGETGVGKELVARAIHAASP 235 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 45679999999999999887644 4556788999999999999999998743
No 284
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0023 Score=55.59 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccc-cC-ceEEEecccccc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSE-FE-GRCFLSDIRKNS 93 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~-f~-~~~~~~~~~~~~ 93 (658)
--++|+|++|+||||++.++++.+++. |. ..+|...+++..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gG 48 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGG 48 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCC
Confidence 358899999999999999999987665 43 334444444433
No 285
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.61 E-value=0.0049 Score=58.55 Aligned_cols=67 Identities=22% Similarity=0.379 Sum_probs=39.1
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHh
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKL 105 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l 105 (658)
..++.+.+.... ++..+|+|+|++|+|||||+.++...+.+.-..+..+ ++.+.+....-.++.+.+
T Consensus 15 ~~~ll~~l~~~~-g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVl-AVDPSSp~tGGAlLGDRi 81 (266)
T PF03308_consen 15 ARELLKRLYPHT-GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVL-AVDPSSPFTGGALLGDRI 81 (266)
T ss_dssp HHHHHHHHGGGT-T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEE-EE-GGGGCC---SS--GG
T ss_pred HHHHHHHHHhhc-CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEE-EECCCCCCCCCcccccHH
Confidence 445555555433 5678999999999999999999999977653333333 366655554434444433
No 286
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.60 E-value=0.0051 Score=55.72 Aligned_cols=74 Identities=9% Similarity=0.091 Sum_probs=40.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCC-----chhHHHHhcC--cceEE
Q 047214 55 VGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANI-----PHFTKERVRR--MKVLI 127 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~l~~~l~~--~~~Ll 127 (658)
+.|.|.+|+|||++|.+++.. ....++++. .....+...-+.+........... ...+.+.+.. +.-.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a-t~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~V 77 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIA-TAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVV 77 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEE-ccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEE
Confidence 679999999999999999876 223455554 222222111122222111112112 3455565533 24479
Q ss_pred EEeCC
Q 047214 128 VLDDV 132 (658)
Q Consensus 128 vlDdv 132 (658)
++|.+
T Consensus 78 LIDcl 82 (169)
T cd00544 78 LIDCL 82 (169)
T ss_pred EEEcH
Confidence 99987
No 287
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.60 E-value=0.0034 Score=55.45 Aligned_cols=36 Identities=28% Similarity=0.279 Sum_probs=29.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..+|.|+|.+|+||||+|+++.+++.+....+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 468999999999999999999999877766666654
No 288
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.59 E-value=0.0075 Score=58.44 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=33.8
Q ss_pred hHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc------cCceEEEe
Q 047214 39 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE------FEGRCFLS 87 (658)
Q Consensus 39 ~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~------f~~~~~~~ 87 (658)
.+.+.|...- ....++.|+|.+|+|||++|.+++...... ...++|+.
T Consensus 7 ~lD~~l~GGi-~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGI-ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCC-CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3444444322 456799999999999999999998663221 25777876
No 289
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.54 E-value=0.0069 Score=59.36 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=46.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh------hHhHHHhhhcCCCCchhHHHHhcCcceE
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG------KILSEKLEVAGANIPHFTKERVRRMKVL 126 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~------~~l~~~l~~~~~~~~~~l~~~l~~~~~L 126 (658)
+.|.|+|.+|+||||+|+++...+.+.-..+.++.+..-....... +.+...+ ...+.+.+ +++.+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l-------~s~v~r~l-s~~~i 73 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSL-------KSAVERAL-SKDTI 73 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHH-------HHHHHHHH-TT-SE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHH-------HHHHHHhh-ccCeE
Confidence 5789999999999999999999866543334444411111011000 1111111 12233334 44689
Q ss_pred EEEeCCCCchhhhhhh-cccCCCCCCCEEEEEecchHHH
Q 047214 127 IVLDDVNEVGQLEGLI-GELDQFGPGSRIVVTTRDKRVL 164 (658)
Q Consensus 127 lvlDdv~~~~~~~~l~-~~l~~~~~~~~ilvttR~~~~~ 164 (658)
+|+||...+.-++.=+ ..-...+.+..+|...-..+.+
T Consensus 74 VI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~ 112 (270)
T PF08433_consen 74 VILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETC 112 (270)
T ss_dssp EEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHH
T ss_pred EEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHH
Confidence 9999998877533321 1112234455555555444433
No 290
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.53 E-value=0.016 Score=52.98 Aligned_cols=112 Identities=17% Similarity=0.110 Sum_probs=63.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHH--h-----hh----cCCCC-------
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEK--L-----EV----AGANI------- 112 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~--l-----~~----~~~~~------- 112 (658)
....|.|+|..|-||||.|...+-+...+--.+..+--+...........+... + +. ...+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~ 100 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAA 100 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHH
Confidence 346899999999999999999988854433223222211111111111111110 0 00 00000
Q ss_pred ---chhHHHHhcC-cceEEEEeCCCCc-----hhhhhhhcccCCCCCCCEEEEEecchH
Q 047214 113 ---PHFTKERVRR-MKVLIVLDDVNEV-----GQLEGLIGELDQFGPGSRIVVTTRDKR 162 (658)
Q Consensus 113 ---~~~l~~~l~~-~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ilvttR~~~ 162 (658)
.+..++.+.. +-=++|||++-.. -+.+.+...+.....+.-||+|-|+.+
T Consensus 101 ~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 101 REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 2333444444 4569999998443 346666666666667889999999875
No 291
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.47 E-value=0.0028 Score=67.21 Aligned_cols=51 Identities=27% Similarity=0.384 Sum_probs=42.0
Q ss_pred CcccccchHhhHHHHhcc---cCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 29 GLVGLNSRIEQIKPFLCM---DLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~---~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
.++|.++.++.|.+.|.. ..+...+++.++|++|+|||+||+.+++...+.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 479999999999998831 112566899999999999999999999976553
No 292
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.47 E-value=0.029 Score=57.86 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..+++++|++|+||||++.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999764
No 293
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.47 E-value=0.039 Score=57.94 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEE
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFL 86 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~ 86 (658)
++.++.++|.+|+||||.|..++..+.+....+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 478999999999999999999998876543333333
No 294
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.46 E-value=0.0089 Score=52.76 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+|.+.|++|+||||+|++++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999997643
No 295
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.46 E-value=0.0089 Score=60.53 Aligned_cols=40 Identities=18% Similarity=0.045 Sum_probs=28.1
Q ss_pred hHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 39 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 39 ~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
.+.+.+.-- +.-+.+.|+|.+|+|||||++.+++.+....
T Consensus 122 RvID~l~Pi--GkGQR~LIvG~pGtGKTTLl~~la~~i~~~~ 161 (380)
T PRK12608 122 RVVDLVAPI--GKGQRGLIVAPPRAGKTVLLQQIAAAVAANH 161 (380)
T ss_pred hhhhheeec--CCCceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 344444421 2334568999999999999999999865433
No 296
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.46 E-value=0.0063 Score=60.39 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=72.3
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh--hHhHHHh
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG--KILSEKL 105 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~--~~l~~~l 105 (658)
+.+.-.....+++.++|...- ...+.+.|.|..|+||||++..+...+...-..++-+.+..+....... .....
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v-~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~-- 180 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAV-RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTR-- 180 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCH-HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEE--
T ss_pred hhccCchhhHHHHHHHHhhcc-ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEee--
Confidence 344444444456666665421 2467899999999999999999998766551233333322222111100 11111
Q ss_pred hhcCCCCchhHHHHhcCcceEEEEeCCCCchhhhhhhcccCCCCCCCEE-EEEecchH
Q 047214 106 EVAGANIPHFTKERVRRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRI-VVTTRDKR 162 (658)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~i-lvttR~~~ 162 (658)
....+..+.+...|+..+=.++++++.+.+.+..+... ..|..+ +.|.....
T Consensus 181 -~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~s 233 (270)
T PF00437_consen 181 -RDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHANS 233 (270)
T ss_dssp -TTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-SS
T ss_pred -cCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecCC
Confidence 12222267788889999999999999998877663332 457777 66766543
No 297
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.44 E-value=0.0056 Score=58.98 Aligned_cols=67 Identities=24% Similarity=0.388 Sum_probs=45.1
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhh
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLE 106 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 106 (658)
.++...+.... ++..+|+|+|.||+|||||..++...+.++-..+..+. +..++....-.++...++
T Consensus 38 ~~ll~~l~p~t-G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlA-VDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPRT-GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLA-VDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhcC-CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEE-ECCCCCCCCccccccHhh
Confidence 44555454333 67889999999999999999999999776654444333 555555444455555444
No 298
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.044 Score=56.12 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=84.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcC--cceEEEEe
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRR--MKVLIVLD 130 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~--~~~LlvlD 130 (658)
|-=.++|++|.|||+++.++|+... +-|+--.+...... ..+++.|.. .+-+||+.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~n------------------~dLr~LL~~t~~kSIivIE 293 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKLD------------------SDLRHLLLATPNKSILLIE 293 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccCc------------------HHHHHHHHhCCCCcEEEEe
Confidence 3445899999999999999998643 33332222222111 113443332 35677778
Q ss_pred CCCCch--------------------hhhhhhccc---CCCCCCCEEE-EEecchH-HHHhhcC---CCceEEcCCCChH
Q 047214 131 DVNEVG--------------------QLEGLIGEL---DQFGPGSRIV-VTTRDKR-VLEKFRG---EKKIYRVNGLEFE 182 (658)
Q Consensus 131 dv~~~~--------------------~~~~l~~~l---~~~~~~~~il-vttR~~~-~~~~~~~---~~~~~~l~~L~~~ 182 (658)
|++-.- .+.-|+..+ +....+-||| +||...+ ..+++.. -...|.+.--+.+
T Consensus 294 DIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~ 373 (457)
T KOG0743|consen 294 DIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFE 373 (457)
T ss_pred ecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHH
Confidence 774321 122234333 2222344665 5665553 2333312 2448889999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhccc
Q 047214 183 EAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSL 227 (658)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l 227 (658)
....|+..+...+. ...++.+|.+...+.-+.-..+|..+
T Consensus 374 ~fK~La~nYL~~~~-----~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 374 AFKTLASNYLGIEE-----DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred HHHHHHHHhcCCCC-----CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 99999988875432 22346667776677666656555544
No 299
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.41 E-value=0.025 Score=54.47 Aligned_cols=100 Identities=15% Similarity=0.132 Sum_probs=56.0
Q ss_pred cccccchHhhHHHHhc----ccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc---cCceEEEeccccccccchhhHhH
Q 047214 30 LVGLNSRIEQIKPFLC----MDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE---FEGRCFLSDIRKNSETGGGKILS 102 (658)
Q Consensus 30 ~vGR~~~~~~l~~~l~----~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~---f~~~~~~~~~~~~~~~~~~~~l~ 102 (658)
++|..-..+.|.+.+. +....++-+++++|.+|+||...++.+++..-.. -+.|-.+.+.........++...
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 5665544455554444 4444677899999999999999999999973221 12222222122222222222111
Q ss_pred HHhhhcCCCCchhHHHHhc-CcceEEEEeCCCCch
Q 047214 103 EKLEVAGANIPHFTKERVR-RMKVLIVLDDVNEVG 136 (658)
Q Consensus 103 ~~l~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~ 136 (658)
..+ .+++++.++ -++-|+|+|+++...
T Consensus 164 ~eL-------~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 164 EEL-------KNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHH-------HHHHHHHHHhcCCceEEechhhhcC
Confidence 111 233333333 368999999998865
No 300
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.40 E-value=0.0096 Score=61.26 Aligned_cols=50 Identities=26% Similarity=0.282 Sum_probs=36.7
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+.++.+.|...- ....++.|.|.+|+|||||+.+++.........++|+.
T Consensus 68 i~eLD~vLgGGi-~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 68 IEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CHHHHHhhcCCc-cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 355666554322 34569999999999999999999988665545667765
No 301
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.026 Score=60.64 Aligned_cols=178 Identities=17% Similarity=0.224 Sum_probs=92.7
Q ss_pred CCCCcccccchHhhHHHHhc---ccC-----C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccc
Q 047214 26 SSNGLVGLNSRIEQIKPFLC---MDL-----S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETG 96 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~---~~~-----~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 96 (658)
.-...-|.|+..+++.+.+. +.. + .=++-|.++|++|.|||.||++++....-.| +. .+.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~-iSG----- 216 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-ISG----- 216 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----ee-ccc-----
Confidence 34567788877766655444 321 0 2256788999999999999999998855433 11 111
Q ss_pred hhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch------------hh----hhhhcccCCCC--CCCEEEEEe
Q 047214 97 GGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG------------QL----EGLIGELDQFG--PGSRIVVTT 158 (658)
Q Consensus 97 ~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------------~~----~~l~~~l~~~~--~~~~ilvtt 158 (658)
-+.+.-..+.......+.+.+.-+.-++++++|.++... ++ .+++..-...+ .|.-|+..|
T Consensus 217 -S~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaT 295 (596)
T COG0465 217 -SDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAAT 295 (596)
T ss_pred -hhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecC
Confidence 011111122222222455666667778999999985422 23 33333322222 232333334
Q ss_pred cchHHH-Hhh---cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 159 RDKRVL-EKF---RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 159 R~~~~~-~~~---~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
..+++. .+. .+..+.+.++.-+...-.+.++-++.......... ...|++.+-|.--
T Consensus 296 NRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd---l~~iAr~tpGfsG 356 (596)
T COG0465 296 NRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD---LKKIARGTPGFSG 356 (596)
T ss_pred CCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC---HHHHhhhCCCccc
Confidence 434332 333 23345666666565555556654443222111111 2337777777553
No 302
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.37 E-value=0.0028 Score=54.79 Aligned_cols=22 Identities=41% Similarity=0.723 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhh
Q 047214 55 VGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~~ 76 (658)
|+|.|.+|+||||+|+++.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999985
No 303
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.015 Score=65.21 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=73.0
Q ss_pred CCCcccccchHhhHHHHhcccC---CC--CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHh
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDL---SD--TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~---~~--~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 101 (658)
.+.++|.++.+..|.+.+.... .+ ...+..+.|+.|+|||.||++++.-+-+..+..+-+. .++... ..+.+
T Consensus 561 ~~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-mse~~e--vskli 637 (898)
T KOG1051|consen 561 HERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-MSEFQE--VSKLI 637 (898)
T ss_pred HhhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-hhhhhh--hhhcc
Confidence 3458999999999999887432 12 4678889999999999999999999876666655555 333222 00111
Q ss_pred HHHhhhcCCCCchhHHHHhcCcc-eEEEEeCCCCch
Q 047214 102 SEKLEVAGANIPHFTKERVRRMK-VLIVLDDVNEVG 136 (658)
Q Consensus 102 ~~~l~~~~~~~~~~l~~~l~~~~-~LlvlDdv~~~~ 136 (658)
..--+..+.....++.+.++.++ .+++||+|+.+.
T Consensus 638 gsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 638 GSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred CCCcccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 11111223333678889999887 577889998765
No 304
>PRK10867 signal recognition particle protein; Provisional
Probab=96.35 E-value=0.026 Score=59.11 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=28.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccc-cCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f~~~~~~~ 87 (658)
..+.++.++|.+|+||||.+..++..+.+. ...+..+.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~ 136 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA 136 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 346899999999999999999999886655 33344443
No 305
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.34 E-value=0.017 Score=56.53 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=34.4
Q ss_pred hHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 39 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 39 ~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+..+++.. .+..++.|.|.+|+|||||+.++.+.........+...
T Consensus 94 ~~r~~~~~---~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~g 139 (290)
T PRK10463 94 RNRARFAA---RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEG 139 (290)
T ss_pred HHHHHHHh---cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECC
Confidence 34444444 56889999999999999999999998766554444433
No 306
>PRK13695 putative NTPase; Provisional
Probab=96.32 E-value=0.04 Score=50.51 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhc
Q 047214 55 VGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
++|+|.+|+||||++..+++...
T Consensus 3 i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 3 IGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999988754
No 307
>PTZ00494 tuzin-like protein; Provisional
Probab=96.31 E-value=0.095 Score=53.59 Aligned_cols=164 Identities=15% Similarity=0.129 Sum_probs=91.7
Q ss_pred cCCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHh
Q 047214 22 VATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 22 ~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 101 (658)
..+.....+|.|+.|-.-+.+.|......++++++++|.-|.||++|.+.+..+-. -..+++. ++..- ..+.-+
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~---~paV~VD-VRg~E--DtLrsV 438 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEG---VALVHVD-VGGTE--DTLRSV 438 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcC---CCeEEEE-ecCCc--chHHHH
Confidence 34556788999999988888888754447899999999999999999998887522 2345554 33321 122333
Q ss_pred HHHhhhcCCCC----chhHHHH-------hcCcceEEEEeCCCCchhhhhhhcc---cCCCCCCCEEEEEecchHH--HH
Q 047214 102 SEKLEVAGANI----PHFTKER-------VRRMKVLIVLDDVNEVGQLEGLIGE---LDQFGPGSRIVVTTRDKRV--LE 165 (658)
Q Consensus 102 ~~~l~~~~~~~----~~~l~~~-------l~~~~~LlvlDdv~~~~~~~~l~~~---l~~~~~~~~ilvttR~~~~--~~ 165 (658)
...++....+. .+.+.+. ..++.=+||+- +.+.+.+..+... +.-...-|.|++----+.+ ..
T Consensus 439 VKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlk-LREGssL~RVYnE~vaLacDrRlCHvv~EVplESLT~~n 517 (664)
T PTZ00494 439 VRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMR-LREGSDLGRVYGEVVSLVSDCQACHIVLAVPMKALTPLN 517 (664)
T ss_pred HHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEE-eccCCcHHHHHHHHHHHHccchhheeeeechHhhhchhh
Confidence 34444433333 2222222 33444344442 2222222222211 1111234555543222211 11
Q ss_pred hhcCCCceEEcCCCChHHHHHHHHHHh
Q 047214 166 KFRGEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 166 ~~~~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
...+...-|.+.+|+.++|.++..+..
T Consensus 518 ~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 518 VSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred ccCccceeEecCCcCHHHHHHHHhccc
Confidence 112445678899999999999876654
No 308
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.31 E-value=0.005 Score=56.61 Aligned_cols=38 Identities=26% Similarity=0.513 Sum_probs=31.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
....+|.+.|++|+||||+|+.+++.....+...+++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34569999999999999999999999876666666653
No 309
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.037 Score=53.14 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=89.8
Q ss_pred CCcccccchHhhHHHHhccc---------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh
Q 047214 28 NGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG 98 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~---------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 98 (658)
..+-|-+...+.|.+.+--. ....-+-+.++|++|.||+.||++++......| ++ ++..
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF-----FS-vSSS------ 200 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF-----FS-VSSS------ 200 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce-----EE-eehH------
Confidence 45667776666666544311 112356788999999999999999998865443 22 2211
Q ss_pred hHhHHHhhhcCCCCchhHHHHh-cCcceEEEEeCCCCc---------hhhhhhhcccC-------CCCCCCEEEEEecch
Q 047214 99 KILSEKLEVAGANIPHFTKERV-RRMKVLIVLDDVNEV---------GQLEGLIGELD-------QFGPGSRIVVTTRDK 161 (658)
Q Consensus 99 ~~l~~~l~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~---------~~~~~l~~~l~-------~~~~~~~ilvttR~~ 161 (658)
+++...++... .....+.+.. ++++-+|++|.++.. +..+.+...+. ....|.-|+-.|..+
T Consensus 201 DLvSKWmGESE-kLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 201 DLVSKWMGESE-KLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIP 279 (439)
T ss_pred HHHHHHhccHH-HHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCc
Confidence 33444443221 1122233332 467899999998642 12333433321 112344445556554
Q ss_pred HHH-HhhcCCCc-eEEcCCCChHHHH-HHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 162 RVL-EKFRGEKK-IYRVNGLEFEEAF-EHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 162 ~~~-~~~~~~~~-~~~l~~L~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
-+. ++...... .|- =||....|. .+|+-+++ . ++..--+...+.+.+++.|.-
T Consensus 280 w~LDsAIRRRFekRIY-IPLPe~~AR~~MF~lhlG-~-tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 280 WVLDSAIRRRFEKRIY-IPLPEAHARARMFKLHLG-D-TPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred hhHHHHHHHHhhccee-ccCCcHHHhhhhheeccC-C-CccccchhhHHHHHhhcCCCC
Confidence 322 22222222 222 245555554 45655542 2 112222233577888888765
No 310
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.027 Score=57.60 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
+.++++++|+.|+||||++.+++......
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~ 164 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR 164 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 35799999999999999999999985433
No 311
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.097 Score=52.13 Aligned_cols=168 Identities=8% Similarity=0.081 Sum_probs=93.8
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh-ccc--------cC-ceEEEeccccccccchhhHhHHHhh
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSE--------FE-GRCFLSDIRKNSETGGGKILSEKLE 106 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~--------f~-~~~~~~~~~~~~~~~~~~~l~~~l~ 106 (658)
++.+.+.+... .-..+..++|..|+||+++|.++++.+ +.+ .+ ...++. ... ....++.+.++..
T Consensus 5 ~~~l~~~i~~~--~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g--~~i~vd~Ir~l~~ 79 (299)
T PRK07132 5 IKFLDNSATQN--KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD--KDLSKSEFLSAIN 79 (299)
T ss_pred HHHHHHHHHhC--CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC--CcCCHHHHHHHHH
Confidence 34455555432 235677799999999999999999985 211 11 122221 001 1111122222211
Q ss_pred hcCCCCchhHHHHhcCcceEEEEeCCCCchh--hhhhhcccCCCCCCCEEEEEecc-hHHHHhhcCCCceEEcCCCChHH
Q 047214 107 VAGANIPHFTKERVRRMKVLIVLDDVNEVGQ--LEGLIGELDQFGPGSRIVVTTRD-KRVLEKFRGEKKIYRVNGLEFEE 183 (658)
Q Consensus 107 ~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~ilvttR~-~~~~~~~~~~~~~~~l~~L~~~~ 183 (658)
... +...-.+.+-++|+|+++.... ...++..+-.-...+.+|++|.+ ..+.+.....+..+.+.+++.++
T Consensus 80 ~~~------~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 80 KLY------FSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred Hhc------cCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 000 0000014778999999877653 55666666555566666665544 44555544778999999999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHh
Q 047214 184 AFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
..+.+.... . + ++.+..++...+|.--|+..+
T Consensus 154 l~~~l~~~~----~-~---~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 154 ILAKLLSKN----K-E---KEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHHHHHcC----C-C---hhHHHHHHHHcCCHHHHHHHH
Confidence 988776541 1 1 123455565666522444443
No 312
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.014 Score=54.46 Aligned_cols=149 Identities=16% Similarity=0.279 Sum_probs=80.3
Q ss_pred CCcccccchHhhHHHHhccc---------CC-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccch
Q 047214 28 NGLVGLNSRIEQIKPFLCMD---------LS-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGG 97 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~---------~~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 97 (658)
...=|-|-..+++.+.++-. -+ +.++-|.++|++|.|||.||+++++.....|-.+ +...+
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firv-----vgsef---- 225 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRV-----VGSEF---- 225 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeee-----ccHHH----
Confidence 34456666666776665421 01 5577888999999999999999999866555221 22222
Q ss_pred hhHhHHHhhhcCCCCchhHHHH----hcCcceEEEEeCCCCch------------hhhhhhcc-cCCC-----CCCCEEE
Q 047214 98 GKILSEKLEVAGANIPHFTKER----VRRMKVLIVLDDVNEVG------------QLEGLIGE-LDQF-----GPGSRIV 155 (658)
Q Consensus 98 ~~~l~~~l~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~------------~~~~l~~~-l~~~-----~~~~~il 155 (658)
....++.. .+..++. =++.+.++++|+++... +.+.++-. +.++ ..+.++|
T Consensus 226 ---vqkylgeg----prmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvi 298 (408)
T KOG0727|consen 226 ---VQKYLGEG----PRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVI 298 (408)
T ss_pred ---HHHHhccC----cHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEE
Confidence 22233221 2222222 23457899999985432 23333222 2222 3566887
Q ss_pred EEecch-HHHHhh---cCCCceEEcCCCChHHHHHHHHHHh
Q 047214 156 VTTRDK-RVLEKF---RGEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 156 vttR~~-~~~~~~---~~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
+.|... .+..++ ..-.+.|+..--+..+-.-.|....
T Consensus 299 matnradtldpallrpgrldrkiefplpdrrqkrlvf~tit 339 (408)
T KOG0727|consen 299 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTIT 339 (408)
T ss_pred EecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhh
Confidence 766543 333332 1224466666334444444554443
No 313
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.23 E-value=0.0079 Score=50.55 Aligned_cols=47 Identities=19% Similarity=0.274 Sum_probs=35.3
Q ss_pred CcccccchHhhHHH----HhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 29 GLVGLNSRIEQIKP----FLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 29 ~~vGR~~~~~~l~~----~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.++|..-..+.+.+ .+.+...+++-|++++|.+|+|||.+++.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 47776655555544 444444367789999999999999999999988
No 314
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.22 E-value=0.0028 Score=52.76 Aligned_cols=26 Identities=35% Similarity=0.568 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 55 VGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
|.|+|++|+|||++|..++..+.+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 56999999999999999999865443
No 315
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.018 Score=58.08 Aligned_cols=91 Identities=21% Similarity=0.249 Sum_probs=56.2
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCC----
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANI---- 112 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---- 112 (658)
+.++.+.|...- =.-.++.|-|.+|+|||||..+++.++.+.. .+.+++ -.+...+- ++-.+.++....+.
T Consensus 79 ~~EldRVLGGG~-V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs-GEES~~Qi--klRA~RL~~~~~~l~l~a 153 (456)
T COG1066 79 IEELDRVLGGGL-VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS-GEESLQQI--KLRADRLGLPTNNLYLLA 153 (456)
T ss_pred hHHHHhhhcCCc-ccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe-CCcCHHHH--HHHHHHhCCCccceEEeh
Confidence 456666665321 2356899999999999999999999977665 677776 22222111 22233333222222
Q ss_pred ---chhHHHHhc-CcceEEEEeCC
Q 047214 113 ---PHFTKERVR-RMKVLIVLDDV 132 (658)
Q Consensus 113 ---~~~l~~~l~-~~~~LlvlDdv 132 (658)
.+.+.+.+. .++-++|+|.+
T Consensus 154 Et~~e~I~~~l~~~~p~lvVIDSI 177 (456)
T COG1066 154 ETNLEDIIAELEQEKPDLVVIDSI 177 (456)
T ss_pred hcCHHHHHHHHHhcCCCEEEEecc
Confidence 344444444 56899999987
No 316
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.21 E-value=0.02 Score=51.38 Aligned_cols=50 Identities=12% Similarity=0.273 Sum_probs=34.0
Q ss_pred HHHHhcCcceEEEEeCC----CCchhhhhh--hcccCCCCCCCEEEEEecchHHHHhh
Q 047214 116 TKERVRRMKVLIVLDDV----NEVGQLEGL--IGELDQFGPGSRIVVTTRDKRVLEKF 167 (658)
Q Consensus 116 l~~~l~~~~~LlvlDdv----~~~~~~~~l--~~~l~~~~~~~~ilvttR~~~~~~~~ 167 (658)
+...+-+++-+|+=|+- +..-.|+-+ ...+. ..|..|+++|.+..+...+
T Consensus 148 IARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 148 IARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhc
Confidence 45666677899999964 333334432 22233 4688999999999988886
No 317
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.20 E-value=0.015 Score=57.28 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=29.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.+.+++.++|++|+||||.+..++..+.+....+.++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 44689999999999999999999988765544444444
No 318
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.20 E-value=0.02 Score=54.83 Aligned_cols=117 Identities=20% Similarity=0.191 Sum_probs=68.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccc--cccccchhhHhHHHhhhcCCC----------C-----
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIR--KNSETGGGKILSEKLEVAGAN----------I----- 112 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~----------~----- 112 (658)
.+..+++|+|.+|+||||+++.+..-.+-.. +.+++..-. ........+.+.+.+..-+.. .
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 3456899999999999999999998655433 334433111 111111112233332221111 1
Q ss_pred -chhHHHHhcCcceEEEEeCCCCchhh---hhhhcccCC--CCCCCEEEEEecchHHHHhh
Q 047214 113 -PHFTKERVRRMKVLIVLDDVNEVGQL---EGLIGELDQ--FGPGSRIVVTTRDKRVLEKF 167 (658)
Q Consensus 113 -~~~l~~~l~~~~~LlvlDdv~~~~~~---~~l~~~l~~--~~~~~~ilvttR~~~~~~~~ 167 (658)
.-.+...+.-++-++|.|+..+.-+. .+++..+.. ...|...++.|.+-.+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 23356677788999999997654332 333333211 24578899999999888886
No 319
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.19 E-value=0.067 Score=56.06 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+.++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 467999999999999999999998854
No 320
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.00026 Score=66.71 Aligned_cols=93 Identities=20% Similarity=0.200 Sum_probs=55.8
Q ss_pred ccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC----CCcCCCccEEEeec
Q 047214 424 NLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS----YPSAPNLETYLLDY 499 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~----l~~l~~L~~L~l~~ 499 (658)
+.+.|+.-||++..+.--..++.|++|.|+-|+|+.+ ..+..+.+|+.|+|..| .+.++. +.++++|+.|.|..
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhcc
Confidence 5566777777776654333667777777777777766 33566677777777766 333333 66667777776666
Q ss_pred CCccc-cc-----ccccCCCCCCEE
Q 047214 500 TNFAC-VP-----SSIQNFKYLSAL 518 (658)
Q Consensus 500 ~~~~~-~~-----~~~~~l~~L~~L 518 (658)
|.... -+ .-+.-+|+|++|
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhc
Confidence 54421 11 123445666665
No 321
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.17 E-value=0.014 Score=61.98 Aligned_cols=50 Identities=22% Similarity=0.234 Sum_probs=37.0
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+.++.+.|...- ....++.|.|.+|+|||||+.+++......-..++|++
T Consensus 80 i~~LD~vLgGGi-~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGI-VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCc-cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 456666664332 44678999999999999999999888655444567776
No 322
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=96.17 E-value=0.084 Score=59.40 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=39.3
Q ss_pred CCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
-..++|.+..+.++.+.+..-. .....|.|+|..|+||+++|+.+.+.-
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAA-KSSFPVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHh-CcCCCEEEECCCCcCHHHHHHHHHHhC
Confidence 4568999999988888776543 334457899999999999999998863
No 323
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.007 Score=56.23 Aligned_cols=30 Identities=43% Similarity=0.605 Sum_probs=26.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
.++.+|+|.|.+|+||||+|++++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346899999999999999999999998765
No 324
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.13 E-value=0.0049 Score=57.68 Aligned_cols=26 Identities=42% Similarity=0.602 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
+|+|.|++|+||||+|+++...+.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 68999999999999999999987643
No 325
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.12 E-value=0.06 Score=52.78 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=64.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEec--cccccccchh----hHhHHH-hh--hcCCC-C--chhHH
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSD--IRKNSETGGG----KILSEK-LE--VAGAN-I--PHFTK 117 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~----~~l~~~-l~--~~~~~-~--~~~l~ 117 (658)
.+...++|.|+.|+||||+.+.++...... ...+++.. +........+ ..+.+. ++ .+..+ . ..-+.
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~ 187 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMM 187 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHH
Confidence 345789999999999999999999876543 23333321 1000000111 000010 00 00000 0 22333
Q ss_pred HHhc-CcceEEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchHHHHh
Q 047214 118 ERVR-RMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRVLEK 166 (658)
Q Consensus 118 ~~l~-~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~~~~ 166 (658)
..+. ..+-++++|++...+.+..+...+. .|..+|+||.+..+...
T Consensus 188 ~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 188 MLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 4444 5789999999988777777766643 47889999997655333
No 326
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.11 E-value=0.024 Score=56.95 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=39.1
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc------cccCceEEEeccccccccchh
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS------SEFEGRCFLSDIRKNSETGGG 98 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~------~~f~~~~~~~~~~~~~~~~~~ 98 (658)
...|.++|...- ....++-|+|++|+|||+++.+++-... ..-..++|+. ..+.+....+
T Consensus 82 ~~~LD~lLgGGi-~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId-tE~~f~~eRi 147 (313)
T TIGR02238 82 SQALDGILGGGI-ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID-TEGTFRPDRI 147 (313)
T ss_pred CHHHHHHhCCCC-cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE-cCCCCCHHHH
Confidence 456666665432 4567888999999999999999886422 1124567776 4444444444
No 327
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.10 E-value=0.019 Score=58.22 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=37.5
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc------CceEEEeccccccccc
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF------EGRCFLSDIRKNSETG 96 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~ 96 (658)
..+.+.|...- ....++-|+|++|+|||+++.+++....... ..++|+. ..+.+...
T Consensus 89 ~~lD~~l~GGi-~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~-te~~f~~~ 151 (317)
T PRK04301 89 KELDELLGGGI-ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID-TEGTFRPE 151 (317)
T ss_pred HHHHHHhcCCc-cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe-CCCCcCHH
Confidence 45555554322 4567888999999999999999998743211 3567776 44433433
No 328
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.10 E-value=0.0036 Score=59.03 Aligned_cols=99 Identities=27% Similarity=0.307 Sum_probs=52.8
Q ss_pred CCCCCcEEeccCCCC--ccccCcccCCccEEEcccc--ccc-cccccccCCCCCCEEecCCCccc--hhhhhhhcCCCCC
Q 047214 534 RFVCPVTINFSSCVN--LIEFPQISGKITRLYLGQS--AIE-EVPSSIECLTDLEVLDLRDCKRL--KRISTRFCKLRSL 606 (658)
Q Consensus 534 ~~~~L~~L~l~~~~~--l~~~~~~~~~L~~L~l~~~--~i~-~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L 606 (658)
.+..|+.|.+.++.. +..+| .+++|++|.++.| .+. .++.....+|+|++|++++|++- ..++. +..+.+|
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL 118 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENL 118 (260)
T ss_pred cccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcch
Confidence 344555555554421 12233 2457777777777 433 44444556677888887777632 12221 4445566
Q ss_pred cEEeccCCcCCccCC--------CCCCcccEEeccCCc
Q 047214 607 VDLFLHGCLNLQSLP--------ALPLCLKSLDLRDCK 636 (658)
Q Consensus 607 ~~L~l~~~~~l~~l~--------~l~~~L~~L~l~~~~ 636 (658)
..|++.+|+..+ +- -+|+ |++|+-.++.
T Consensus 119 ~~Ldl~n~~~~~-l~dyre~vf~ll~~-L~~LD~~dv~ 154 (260)
T KOG2739|consen 119 KSLDLFNCSVTN-LDDYREKVFLLLPS-LKYLDGCDVD 154 (260)
T ss_pred hhhhcccCCccc-cccHHHHHHHHhhh-hccccccccC
Confidence 666777665332 22 2566 6666655443
No 329
>PRK06547 hypothetical protein; Provisional
Probab=96.09 E-value=0.0088 Score=54.44 Aligned_cols=27 Identities=41% Similarity=0.347 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
....+|+|.|.+|+||||+|+.+++..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999999873
No 330
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.08 E-value=0.088 Score=54.40 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.++++.++|+.|+||||.+.+++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998754
No 331
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.08 E-value=0.0077 Score=51.70 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=29.3
Q ss_pred hHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 36 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 36 ~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+..++.+.+...- ....++.+.|.-|+||||+++.+++..
T Consensus 7 ~t~~l~~~l~~~l-~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPL-DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3445555454322 334589999999999999999999984
No 332
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.07 E-value=0.0055 Score=46.24 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+++|.|.+|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 333
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.07 E-value=0.0038 Score=52.61 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccccCc
Q 047214 55 VGIWGMGGIGKTTLATAIFNQFSSEFEG 82 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~~~~~f~~ 82 (658)
|.|.|.+|+|||++|+.++......|..
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~R 29 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKR 29 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeE
Confidence 6799999999999999999998777753
No 334
>PTZ00301 uridine kinase; Provisional
Probab=96.06 E-value=0.0056 Score=57.62 Aligned_cols=28 Identities=32% Similarity=0.637 Sum_probs=24.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
..+|+|.|.+|+||||+|+.+.+++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence 4789999999999999999999886443
No 335
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.034 Score=55.50 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=39.1
Q ss_pred CCCCCcccccchHhhHHHHhcccC-------C--CCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 25 DSSNGLVGLNSRIEQIKPFLCMDL-------S--DTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 25 ~~~~~~vGR~~~~~~l~~~l~~~~-------~--~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
+.=..+.|-.+..+-|.+.+.-.. + ..=+-|.++|++|.|||-||++++.....
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 444678888877777776554210 1 23357889999999999999999998553
No 336
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.01 E-value=0.017 Score=53.63 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=50.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccc--hhhHhHHHhh---hcCCCCchhHHHHhcCcce
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETG--GGKILSEKLE---VAGANIPHFTKERVRRMKV 125 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~l~~~l~---~~~~~~~~~l~~~l~~~~~ 125 (658)
....++|.|+.|+||||+++.++..+... ...+.+....+..... ...+..+.-. .......+.++..++..+=
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 35689999999999999999998876533 2333333222211100 0011100000 0011114556667777888
Q ss_pred EEEEeCCCCchhhhhh
Q 047214 126 LIVLDDVNEVGQLEGL 141 (658)
Q Consensus 126 LlvlDdv~~~~~~~~l 141 (658)
.++++++.+.+.++.+
T Consensus 103 ~i~igEir~~ea~~~~ 118 (186)
T cd01130 103 RIIVGEVRGGEALDLL 118 (186)
T ss_pred EEEEEccCcHHHHHHH
Confidence 8899999887766543
No 337
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.01 E-value=0.037 Score=66.37 Aligned_cols=28 Identities=14% Similarity=0.135 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..++-|.++|++|+|||.||+++|....
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 3456788999999999999999999843
No 338
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.99 E-value=0.022 Score=56.99 Aligned_cols=50 Identities=22% Similarity=0.163 Sum_probs=37.7
Q ss_pred HhhHHHHhc-ccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 37 IEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 37 ~~~l~~~l~-~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
...|...|. ..- +.-+++-|+|++|+||||||.+++.........++|+.
T Consensus 40 i~~LD~~Lg~GGl-p~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 40 SLSLDIALGIGGY-PKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CHHHHHHhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 345666665 322 45678999999999999999999988665556677776
No 339
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.98 E-value=0.082 Score=47.97 Aligned_cols=110 Identities=16% Similarity=0.163 Sum_probs=58.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEec------cccccccchhhHhHHHhhh-cCCCC------chhHH
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSD------IRKNSETGGGKILSEKLEV-AGANI------PHFTK 117 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~------~~~~~~~~~~~~l~~~l~~-~~~~~------~~~l~ 117 (658)
...+++|.|..|.|||||++.++...... ...+++.. +.+....... -+.+.+.. ..... .-.+.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~-tv~~nl~~~~~~~LS~G~~~rv~la 103 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLG-TLREQLIYPWDDVLSGGEQQRLAFA 103 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccc-cHHHHhhccCCCCCCHHHHHHHHHH
Confidence 35689999999999999999998864321 22222211 1111110111 11111111 11111 22345
Q ss_pred HHhcCcceEEEEeCCCCch---hhhhhhcccCCCCCCCEEEEEecchHHH
Q 047214 118 ERVRRMKVLIVLDDVNEVG---QLEGLIGELDQFGPGSRIVVTTRDKRVL 164 (658)
Q Consensus 118 ~~l~~~~~LlvlDdv~~~~---~~~~l~~~l~~~~~~~~ilvttR~~~~~ 164 (658)
..+-.++-++++|+-...- ..+.+...+... +..||++|.+....
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 5566778899999974432 233333333222 46788888887654
No 340
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.97 E-value=0.031 Score=49.39 Aligned_cols=105 Identities=20% Similarity=0.310 Sum_probs=58.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLD 130 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlD 130 (658)
...+++|.|..|.|||||++.++..... ....+++....... .+.+ +.. +....-.+...+-.++-++++|
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~------~~~~-lS~-G~~~rv~laral~~~p~illlD 95 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIG------YFEQ-LSG-GEKMRLALAKLLLENPNLLLLD 95 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEE------EEcc-CCH-HHHHHHHHHHHHhcCCCEEEEe
Confidence 3468999999999999999999886432 24444443110000 0000 000 0000222455566778899999
Q ss_pred CCCCc---hhhhhhhcccCCCCCCCEEEEEecchHHHHh
Q 047214 131 DVNEV---GQLEGLIGELDQFGPGSRIVVTTRDKRVLEK 166 (658)
Q Consensus 131 dv~~~---~~~~~l~~~l~~~~~~~~ilvttR~~~~~~~ 166 (658)
+-... ...+.+...+... +..|+++|.+......
T Consensus 96 EP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 96 EPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred CCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 97432 2233333333222 3578888888765544
No 341
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.96 E-value=0.0037 Score=58.92 Aligned_cols=32 Identities=28% Similarity=0.158 Sum_probs=13.3
Q ss_pred ccceEEecccCCCCCCCCCCCCCccEEEecCC
Q 047214 424 NLRYLHWDKYPLRTLPSNFKPENLVELNLHFS 455 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~ 455 (658)
.|..|++.+.+++++-..-.|.+|+.|.++.|
T Consensus 44 ~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLTNFPKLPKLKKLELSDN 75 (260)
T ss_pred chhhhhhhccceeecccCCCcchhhhhcccCC
Confidence 34444444444333322223444444444444
No 342
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.16 Score=50.05 Aligned_cols=128 Identities=9% Similarity=0.069 Sum_probs=73.3
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh-ccc------------cCceEEEeccccccccchhhHhHH
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSE------------FEGRCFLSDIRKNSETGGGKILSE 103 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~------------f~~~~~~~~~~~~~~~~~~~~l~~ 103 (658)
-+++.+.+..+ .-.....++|+.|+||+++|.++++.+ +.. .+...++..... ...-.++.
T Consensus 6 ~~~L~~~i~~~--rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~-~~~I~idq--- 79 (290)
T PRK05917 6 WEALIQRVRDQ--KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK-GRLHSIET--- 79 (290)
T ss_pred HHHHHHHHHcC--CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC-CCcCcHHH---
Confidence 35566666542 235677899999999999999999983 211 122222210000 00001111
Q ss_pred HhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHHhhcCCCceEE
Q 047214 104 KLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLEKFRGEKKIYR 175 (658)
Q Consensus 104 ~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~~~~~~~~~~~ 175 (658)
.+.+.+.+ .++.-++|+|+++... .+..++..+-+-..+..+|++|.+. .+.....+.+..+.
T Consensus 80 ---------iR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~ 150 (290)
T PRK05917 80 ---------PRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIH 150 (290)
T ss_pred ---------HHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEE
Confidence 22233333 2446789999998765 4677776665545566666666554 44445446677888
Q ss_pred cCCC
Q 047214 176 VNGL 179 (658)
Q Consensus 176 l~~L 179 (658)
+.++
T Consensus 151 ~~~~ 154 (290)
T PRK05917 151 IPME 154 (290)
T ss_pred ccch
Confidence 8765
No 343
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.95 E-value=0.021 Score=57.14 Aligned_cols=50 Identities=24% Similarity=0.218 Sum_probs=37.5
Q ss_pred HhhHHHHhc-ccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 37 IEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 37 ~~~l~~~l~-~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+..|...|. ..- ...+++.|+|++|+||||||.+++......-..++|+.
T Consensus 40 i~~LD~~Lg~GGl-p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 40 SLSLDLALGVGGL-PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CHHHHHHhcCCCC-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 455666664 332 55679999999999999999999888665556667775
No 344
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.94 E-value=0.041 Score=50.76 Aligned_cols=115 Identities=19% Similarity=0.251 Sum_probs=61.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccc--cccc---cchhhHhHHHh---hhc------CCCC----
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIR--KNSE---TGGGKILSEKL---EVA------GANI---- 112 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~--~~~~---~~~~~~l~~~l---~~~------~~~~---- 112 (658)
...+++|.|+.|+|||||++.++..... ....+++.... .... ...+..+.+.+ +.. ....
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 4568999999999999999999886432 34445544211 1000 00111111111 110 0111
Q ss_pred --chhHHHHhcCcceEEEEeCCCCch---hhhhhhcccCCC-CC-CCEEEEEecchHHHHh
Q 047214 113 --PHFTKERVRRMKVLIVLDDVNEVG---QLEGLIGELDQF-GP-GSRIVVTTRDKRVLEK 166 (658)
Q Consensus 113 --~~~l~~~l~~~~~LlvlDdv~~~~---~~~~l~~~l~~~-~~-~~~ilvttR~~~~~~~ 166 (658)
.-.+...+-..+-++++|+-...- ..+.+...+... .. +..||++|.+......
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 222345556678999999975432 233333333222 22 6688999988765544
No 345
>PRK08233 hypothetical protein; Provisional
Probab=95.94 E-value=0.0068 Score=56.08 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..+|+|.|.+|+||||+|..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999998754
No 346
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.94 E-value=0.024 Score=58.07 Aligned_cols=108 Identities=16% Similarity=0.131 Sum_probs=63.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccC---ceEEEeccccccccchhh----HhHHH-hhhcCCCCchhHHHHhcC
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFE---GRCFLSDIRKNSETGGGK----ILSEK-LEVAGANIPHFTKERVRR 122 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~----~l~~~-l~~~~~~~~~~l~~~l~~ 122 (658)
....|.|+|+.|+||||+++.+++.+....+ .++.+.+-.+ ....... .+.+. ...........++..++.
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE-~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~ 211 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE-FVYDEIETISASVCQSEIPRHLNNFAAGVRNALRR 211 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce-EeccccccccceeeeeeccccccCHHHHHHHHhcc
Confidence 4579999999999999999999987643322 2333321111 1111110 01110 011111226677888899
Q ss_pred cceEEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchH
Q 047214 123 MKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKR 162 (658)
Q Consensus 123 ~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~ 162 (658)
.+-.+++..+.+.+..+..+... ..|..++-|-....
T Consensus 212 ~Pd~i~vGEiRd~et~~~al~aa---~tGh~v~tTlHa~~ 248 (358)
T TIGR02524 212 KPHAILVGEARDAETISAALEAA---LTGHPVYTTLHSSG 248 (358)
T ss_pred CCCEEeeeeeCCHHHHHHHHHHH---HcCCcEEEeeccCC
Confidence 99999999998888766544442 23555555555443
No 347
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.91 E-value=0.019 Score=57.41 Aligned_cols=59 Identities=27% Similarity=0.258 Sum_probs=39.6
Q ss_pred CCCCcccccchHh---hHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEE
Q 047214 26 SSNGLVGLNSRIE---QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCF 85 (658)
Q Consensus 26 ~~~~~vGR~~~~~---~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~ 85 (658)
....+||..+.-+ -+.+++.+.. -.-+.+.+.|++|.|||+||..+++.+..+.+.+..
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K-~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGK-IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT---TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhccc-ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 4578999876654 3455555432 235788899999999999999999998876554443
No 348
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.90 E-value=0.063 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHH
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFN 74 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~ 74 (658)
.-.+++|.|+.|+|||||.+.+..
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999998863
No 349
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.90 E-value=0.024 Score=55.87 Aligned_cols=56 Identities=27% Similarity=0.261 Sum_probs=42.3
Q ss_pred CCCCCcccccchHh---hHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccC
Q 047214 25 DSSNGLVGLNSRIE---QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE 81 (658)
Q Consensus 25 ~~~~~~vGR~~~~~---~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~ 81 (658)
...+.+||..+.-+ -+.+++.... -.-+.|.+.|++|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk-~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGK-MAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCc-ccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 34577999876553 4666776543 34578899999999999999999999776433
No 350
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.89 E-value=0.086 Score=47.18 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
+.|+++|+.|+||||+.+++++...-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999999866555
No 351
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.087 Score=49.22 Aligned_cols=145 Identities=17% Similarity=0.327 Sum_probs=81.5
Q ss_pred cccchHhhHHHHhcccC---------C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHh
Q 047214 32 GLNSRIEQIKPFLCMDL---------S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 32 GR~~~~~~l~~~l~~~~---------~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 101 (658)
|-|+.+++|.+.+.-.. + .+++-+.++|++|.|||-||++++... -+|+..++.. ++.
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht------~c~firvsgs------elv 218 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT------DCTFIRVSGS------ELV 218 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc------ceEEEEechH------HHH
Confidence 45677777777665221 1 356678899999999999999999742 2333323321 222
Q ss_pred HHHhhhcCCCCchhHHHH----hcCcceEEEEeCCCCch------------hhh----hhhcccCC--CCCCCEEEEEec
Q 047214 102 SEKLEVAGANIPHFTKER----VRRMKVLIVLDDVNEVG------------QLE----GLIGELDQ--FGPGSRIVVTTR 159 (658)
Q Consensus 102 ~~~l~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~------------~~~----~l~~~l~~--~~~~~~ilvttR 159 (658)
...++.. .+..++. =...+-+|+.|++++.. +.+ .++..+.. ...+.++|++|.
T Consensus 219 qk~igeg----srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatn 294 (404)
T KOG0728|consen 219 QKYIGEG----SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN 294 (404)
T ss_pred HHHhhhh----HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEecc
Confidence 2222211 2222222 23457889999886531 111 12222221 236778888776
Q ss_pred chHHH-Hhh---cCCCceEEcCCCChHHHHHHHHHHh
Q 047214 160 DKRVL-EKF---RGEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 160 ~~~~~-~~~---~~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
.-++. +++ ..-.+.|+..+-+.+.-.+.++-+.
T Consensus 295 ridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 295 RIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred ccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 55432 222 2235678888877777777776554
No 352
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.87 E-value=0.014 Score=59.86 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=40.2
Q ss_pred CCcccccchHhhHHHHhccc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 28 NGLVGLNSRIEQIKPFLCMD-----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~-----------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
.+++|.++..+.+.-.+... ....++.+.++|++|+|||++|+.++......|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45999999988887666531 001246789999999999999999999865443
No 353
>PRK06762 hypothetical protein; Provisional
Probab=95.86 E-value=0.0079 Score=54.70 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+.+|+|+|++|+||||+|+++++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999886
No 354
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.85 E-value=0.025 Score=55.73 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=25.9
Q ss_pred hHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 39 QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 39 ~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+.+.+.. ..+-+.++|++|+|||++++.+.+...
T Consensus 24 ~ll~~l~~----~~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 24 YLLDLLLS----NGRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp HHHHHHHH----CTEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred HHHHHHHH----cCCcEEEECCCCCchhHHHHhhhccCC
Confidence 44454443 245678999999999999999887643
No 355
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.85 E-value=0.015 Score=59.76 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=41.0
Q ss_pred CCcccccchHhhHHHHhccc--------C---CCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 28 NGLVGLNSRIEQIKPFLCMD--------L---SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~--------~---~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
..++|.++.++.+..++... . ....+.+.++|++|+|||++|+.++..+...|
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~f 78 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChh
Confidence 45999999999998887531 0 01246789999999999999999999865443
No 356
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.84 E-value=0.062 Score=47.73 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
++.|+|.+|+||||+|+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999864
No 357
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.83 E-value=0.032 Score=51.06 Aligned_cols=107 Identities=18% Similarity=0.155 Sum_probs=58.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccc--cccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEE
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIR--KNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIV 128 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~Llv 128 (658)
.-.+++|.|+.|+|||||++.++.-..- ....+++.... ...... . +. .++...-.+...+-.++-+++
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~~--~-----LS-gGq~qrv~laral~~~p~lll 94 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQYI--D-----LS-GGELQRVAIAAALLRNATFYL 94 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEcccC--C-----CC-HHHHHHHHHHHHHhcCCCEEE
Confidence 3458999999999999999998875432 23344443110 000000 0 00 000002234455667788999
Q ss_pred EeCCCCch---hhhhhhcccCCC-CC-CCEEEEEecchHHHHh
Q 047214 129 LDDVNEVG---QLEGLIGELDQF-GP-GSRIVVTTRDKRVLEK 166 (658)
Q Consensus 129 lDdv~~~~---~~~~l~~~l~~~-~~-~~~ilvttR~~~~~~~ 166 (658)
+|+-...- ..+.+...+... .. +..||++|.+......
T Consensus 95 LDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 99974432 223333332211 12 3678888888766554
No 358
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.82 E-value=0.03 Score=55.10 Aligned_cols=38 Identities=29% Similarity=0.237 Sum_probs=34.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+..+++.|+|.+|+|||+++.+++.+..+.+..++|++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 56789999999999999999999999777788899987
No 359
>PRK05439 pantothenate kinase; Provisional
Probab=95.81 E-value=0.023 Score=56.54 Aligned_cols=29 Identities=31% Similarity=0.363 Sum_probs=25.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
+.+-+|+|.|.+|+||||+|+.+......
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 66789999999999999999999886543
No 360
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.80 E-value=0.056 Score=57.37 Aligned_cols=57 Identities=26% Similarity=0.303 Sum_probs=39.1
Q ss_pred CcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cccCceEEEe
Q 047214 29 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEFEGRCFLS 87 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~~~~~~~ 87 (658)
...|...-+..|.+.+. +- ....++.|.|.+|+|||++|..++.... +.-..++|++
T Consensus 173 ~~~gi~tG~~~LD~~~~-G~-~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS 230 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLTN-GL-VKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS 230 (421)
T ss_pred CCcceeCCChhHHHHhc-CC-CCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34555555666666554 21 3456889999999999999999997743 3334566665
No 361
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.80 E-value=0.0012 Score=71.87 Aligned_cols=103 Identities=28% Similarity=0.324 Sum_probs=57.2
Q ss_pred ccceEEecccC-CCC--C-CCCCCCCCccEEEecCC--Ccccc----cccccCCCCccEEeccCCCcccccC---CC-cC
Q 047214 424 NLRYLHWDKYP-LRT--L-PSNFKPENLVELNLHFS--KVEQL----WEGKKEAFKLKSINLSHCRHFIDMS---YP-SA 489 (658)
Q Consensus 424 ~L~~L~l~~~~-l~~--l-p~~~~l~~L~~L~L~~~--~i~~l----~~~~~~l~~L~~L~l~~~~~~~~~~---l~-~l 489 (658)
.|+.|.+.++. +.. + +....+++|+.|+++++ .+... ......+.+|+.|++++|..+++.. ++ .+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 67777776652 332 2 22237788888888763 11111 1223445777778887776555554 22 36
Q ss_pred CCccEEEeecCC-ccc--ccccccCCCCCCEEeccCCCCC
Q 047214 490 PNLETYLLDYTN-FAC--VPSSIQNFKYLSALSFEGCKSL 526 (658)
Q Consensus 490 ~~L~~L~l~~~~-~~~--~~~~~~~l~~L~~L~l~~~~~l 526 (658)
++|+.|.+.+.. +.+ +-.....+++|+.|++++|..+
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 677777654422 221 2233455666777777776554
No 362
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.80 E-value=0.071 Score=54.19 Aligned_cols=38 Identities=24% Similarity=0.326 Sum_probs=29.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.+.+++.++|+.|+||||++..++......-..+.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45789999999999999999999987644434455554
No 363
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.80 E-value=0.055 Score=48.94 Aligned_cols=114 Identities=13% Similarity=0.191 Sum_probs=60.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhc-CCCC----chhHHHHhcCcce
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVA-GANI----PHFTKERVRRMKV 125 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~----~~~l~~~l~~~~~ 125 (658)
.-.+++|.|+.|+|||||.+.++..... ....+++....- ......+.....++.. .... .-.+...+-.++-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g~~~-~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDGKEV-SFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEC-CcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 3468999999999999999999876432 344455442110 0000000000000000 0000 2234455667788
Q ss_pred EEEEeCCCCch---hhhhhhcccCCC-CCCCEEEEEecchHHHHh
Q 047214 126 LIVLDDVNEVG---QLEGLIGELDQF-GPGSRIVVTTRDKRVLEK 166 (658)
Q Consensus 126 LlvlDdv~~~~---~~~~l~~~l~~~-~~~~~ilvttR~~~~~~~ 166 (658)
++++|+-...- ..+.+...+... ..+..||++|.+......
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99999975432 233333333221 236788999998764444
No 364
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.78 E-value=0.014 Score=56.28 Aligned_cols=30 Identities=37% Similarity=0.461 Sum_probs=26.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
.+..+++|.|++|+|||||++.++...+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567899999999999999999999886654
No 365
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.78 E-value=0.33 Score=43.83 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...++|.|++|+||||+++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999875
No 366
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.78 E-value=0.0094 Score=56.57 Aligned_cols=27 Identities=41% Similarity=0.668 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.+..+|+|.|.+|+|||||++.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999876
No 367
>PRK09354 recA recombinase A; Provisional
Probab=95.75 E-value=0.026 Score=57.01 Aligned_cols=50 Identities=26% Similarity=0.215 Sum_probs=38.8
Q ss_pred HhhHHHHhc-ccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 37 IEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 37 ~~~l~~~l~-~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+..|..+|. ..- ..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 45 i~~LD~~LG~GGi-p~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 45 SLALDIALGIGGL-PRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred cHHHHHHhcCCCC-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 456666665 333 55679999999999999999999988666666777776
No 368
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.73 E-value=0.012 Score=54.51 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=30.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.++++|+|++|+|||||+.++++.....|...+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 468899999999999999999999888886555554
No 369
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.73 E-value=0.066 Score=49.28 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=59.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccc-------------cccchh--hHhHHHhhhcCCCC---
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKN-------------SETGGG--KILSEKLEVAGANI--- 112 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-------------~~~~~~--~~l~~~l~~~~~~~--- 112 (658)
...+++|.|+.|+|||||++.++...... ...+++....-. +....+ ..+.+.+ ....
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i---~~~LS~G 102 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNL---GRRFSGG 102 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhh---cccCCHH
Confidence 34589999999999999999998864321 233333311000 000000 0000000 0011
Q ss_pred ---chhHHHHhcCcceEEEEeCCCCchh---hhhhhcccCCCCCCCEEEEEecchHHHH
Q 047214 113 ---PHFTKERVRRMKVLIVLDDVNEVGQ---LEGLIGELDQFGPGSRIVVTTRDKRVLE 165 (658)
Q Consensus 113 ---~~~l~~~l~~~~~LlvlDdv~~~~~---~~~l~~~l~~~~~~~~ilvttR~~~~~~ 165 (658)
.-.+...+-.++-++++|+....-+ .+.+...+.....+..||++|.+.....
T Consensus 103 ~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 103 ERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 2223455567789999999754332 2333333322223678899998887654
No 370
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=95.73 E-value=0.028 Score=60.20 Aligned_cols=111 Identities=14% Similarity=0.119 Sum_probs=67.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLD 130 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlD 130 (658)
..+++.|+|+.|+||||+...+...+...-..++-+.+ +.......+... +.-...+.+..+.++..|+..+=.+++.
T Consensus 241 ~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiED-pvE~~~~~~~q~-~v~~~~g~~f~~~lr~~LR~dPDvI~vG 318 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVED-PVEYQIEGIGQI-QVNPKIGLTFAAGLRAILRQDPDIIMVG 318 (486)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcC-CeeeecCCCceE-EEccccCccHHHHHHHHHhcCCCEEEEe
Confidence 45689999999999999999888775433223333331 111221111100 0001112233678889999999999999
Q ss_pred CCCCchhhhhhhcccCCCCCCCEEEEEecchHHHHh
Q 047214 131 DVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRVLEK 166 (658)
Q Consensus 131 dv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~~~~ 166 (658)
++.+.+.....+... ..|..++-|-........
T Consensus 319 EiRd~eta~~a~~aa---~tGHlvlsTlHa~sa~~a 351 (486)
T TIGR02533 319 EIRDLETAQIAIQAS---LTGHLVLSTLHTNDAAGA 351 (486)
T ss_pred CCCCHHHHHHHHHHH---HhCCcEEEEECCCCHHHH
Confidence 999998765554442 245566766665544433
No 371
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.72 E-value=0.031 Score=56.67 Aligned_cols=57 Identities=14% Similarity=0.219 Sum_probs=37.1
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc------cCceEEEeccccccccc
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE------FEGRCFLSDIRKNSETG 96 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~ 96 (658)
..+..+|...- ....++-|+|++|+|||+++.+++..+... -..++|+. ..+.+...
T Consensus 82 ~~lD~~l~GGi-~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~-te~~f~~~ 144 (310)
T TIGR02236 82 KELDELLGGGI-ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID-TENTFRPE 144 (310)
T ss_pred HHHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE-CCCCCCHH
Confidence 34555554322 346788999999999999999998874321 12577776 44433333
No 372
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.71 E-value=0.033 Score=55.31 Aligned_cols=28 Identities=25% Similarity=0.400 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
..++++++|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999988654
No 373
>PRK04040 adenylate kinase; Provisional
Probab=95.71 E-value=0.011 Score=54.66 Aligned_cols=26 Identities=27% Similarity=0.557 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..+|+|+|++|+||||+++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999999874
No 374
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.69 E-value=0.024 Score=52.37 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+.++++|+|++|+|||||++++.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 46789999999999999999999864
No 375
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.67 E-value=0.026 Score=59.90 Aligned_cols=50 Identities=26% Similarity=0.259 Sum_probs=37.1
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+.++.+.|...- ....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 66 i~~LD~~LgGGi-~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGL-VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCc-cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 456666665432 34569999999999999999999998654445667766
No 376
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.093 Score=54.07 Aligned_cols=72 Identities=25% Similarity=0.403 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhhhhcccCCCCCCCcccccchHhhHHH---Hhccc------CCCCeEEEEEEcCCCCcHHHHHHHHHH
Q 047214 4 QLVNKIVEDVLKNLEKATVATDSSNGLVGLNSRIEQIKP---FLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFN 74 (658)
Q Consensus 4 ~~i~~~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~---~l~~~------~~~~~~vv~i~G~~GvGKTtLa~~~~~ 74 (658)
..++.|.++|..+.++. .-..+-|-+...+.+.+ |.... .....+-+.+.|++|.|||.|++++|-
T Consensus 134 ~~~~~i~~EI~~~~~~v-----~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAs 208 (428)
T KOG0740|consen 134 TLIEGIRNEIGDTLRNV-----GWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIAT 208 (428)
T ss_pred hhhHHHHHHHhccCCcc-----cccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHh
Confidence 35566666776544433 34455564444443333 22211 114466778999999999999999999
Q ss_pred hhcccc
Q 047214 75 QFSSEF 80 (658)
Q Consensus 75 ~~~~~f 80 (658)
+....|
T Consensus 209 E~~atf 214 (428)
T KOG0740|consen 209 ESGATF 214 (428)
T ss_pred hhcceE
Confidence 865443
No 377
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=95.66 E-value=0.018 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 047214 55 VGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~ 75 (658)
..|.|.+|||||+|+..++.+
T Consensus 11 llIigDsgVGKssLl~rF~dd 31 (198)
T KOG0079|consen 11 LLIIGDSGVGKSSLLLRFADD 31 (198)
T ss_pred HHeecCCcccHHHHHHHHhhc
Confidence 457899999999999999987
No 378
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.66 E-value=0.023 Score=61.86 Aligned_cols=49 Identities=20% Similarity=0.095 Sum_probs=38.2
Q ss_pred CCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.-..++|.+..++++.+.+..-. .....|.|+|..|+||+.+|+.+...
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A-~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLA-MLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHh-CCCCCEEEECCCCccHHHHHHHHHHh
Confidence 34579999998888887776332 23445889999999999999997765
No 379
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.64 E-value=0.018 Score=50.97 Aligned_cols=35 Identities=20% Similarity=0.237 Sum_probs=28.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRC 84 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~ 84 (658)
.+..+|.++|.+|.||||+|.++.+.+.+....+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y 55 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVY 55 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 45679999999999999999999999766544443
No 380
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.63 E-value=0.067 Score=56.33 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=27.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc--cccCceEEEe
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS--SEFEGRCFLS 87 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~--~~f~~~~~~~ 87 (658)
.++++++|++|+||||++..++.... .....+..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999999988754 3334455554
No 381
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.62 E-value=0.048 Score=55.06 Aligned_cols=107 Identities=16% Similarity=0.140 Sum_probs=61.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccccc--chhhHhHHHh--hhcCCCCchhHHHHhcCcceE
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSET--GGGKILSEKL--EVAGANIPHFTKERVRRMKVL 126 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~--~~~~~l~~~l--~~~~~~~~~~l~~~l~~~~~L 126 (658)
....++|.|..|+||||+++.+...+.... .++.+.+..+.... ....+..+.- +....+..+.+...++..+=.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 356899999999999999999988765432 23333322221111 1111111100 001112256677788888999
Q ss_pred EEEeCCCCchhhhhhhcccCCCCCCCE-EEEEecchH
Q 047214 127 IVLDDVNEVGQLEGLIGELDQFGPGSR-IVVTTRDKR 162 (658)
Q Consensus 127 lvlDdv~~~~~~~~l~~~l~~~~~~~~-ilvttR~~~ 162 (658)
+++|++...+.++. +.... .|.. ++.|+....
T Consensus 222 ii~gE~r~~e~~~~-l~a~~---~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 222 IILGELRGDEAFDF-IRAVN---TGHPGSITTLHAGS 254 (308)
T ss_pred EEEeccCCHHHHHH-HHHHh---cCCCeEEEEEeCCC
Confidence 99999998766654 34333 2332 467777654
No 382
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.61 E-value=0.012 Score=55.74 Aligned_cols=28 Identities=43% Similarity=0.592 Sum_probs=24.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+...+|+|.|++|+|||||++.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999998754
No 383
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.60 E-value=0.012 Score=54.09 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+++.+.|++|+||||+|+++.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999998754
No 384
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.56 E-value=0.075 Score=48.63 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
++.+.|++|+||||++..++..+.+.-..++.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6789999999999999999988665533343333
No 385
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.56 E-value=0.012 Score=54.02 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....|.|+|++|+||||+|+++++...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 355899999999999999999999863
No 386
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.088 Score=50.43 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=34.6
Q ss_pred hhHHHHhcCcceEEEEeCCCCch------hhhhhhcccCCCCCCCEEEEEecchHHHHh
Q 047214 114 HFTKERVRRMKVLIVLDDVNEVG------QLEGLIGELDQFGPGSRIVVTTRDKRVLEK 166 (658)
Q Consensus 114 ~~l~~~l~~~~~LlvlDdv~~~~------~~~~l~~~l~~~~~~~~ilvttR~~~~~~~ 166 (658)
-.+.+.|-.++=|++||+-.... ....++..+.. .|..|++.|.+......
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHh
Confidence 34566777889999999853322 34445555543 38999999999876555
No 387
>PRK03839 putative kinase; Provisional
Probab=95.53 E-value=0.012 Score=54.33 Aligned_cols=24 Identities=33% Similarity=0.613 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.|.|.|++|+||||++++++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999854
No 388
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.53 E-value=0.015 Score=53.39 Aligned_cols=26 Identities=46% Similarity=0.641 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
+|+|.|.+|+||||+|..++......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~ 26 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVN 26 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999986543
No 389
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.53 E-value=0.11 Score=52.84 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=43.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc--cccCceEEEeccccccccchh---hHhHHHhhhcCCCC--chhHHHHhcC-
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS--SEFEGRCFLSDIRKNSETGGG---KILSEKLEVAGANI--PHFTKERVRR- 122 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~--~~~l~~~l~~- 122 (658)
+.+++.++|+.||||||-..+++.++. ..-..+..++ -+.+..... +..+++++.+-... ...+.+.+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT--tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT--TDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE--eccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh
Confidence 378999999999999977666666633 3233444443 122333333 44444444322111 4444444332
Q ss_pred -cceEEEEeCC
Q 047214 123 -MKVLIVLDDV 132 (658)
Q Consensus 123 -~~~LlvlDdv 132 (658)
..=++.+|-+
T Consensus 280 ~~~d~ILVDTa 290 (407)
T COG1419 280 RDCDVILVDTA 290 (407)
T ss_pred hcCCEEEEeCC
Confidence 1245666766
No 390
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.15 Score=48.05 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=40.5
Q ss_pred CCCcccccchHhhHHHHhcccC---------C-CCeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDL---------S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~---------~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
-+.+=|-++.++++.+.+.-.. + ..++-|..||++|.|||-+|++.+.+....|
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF 233 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF 233 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH
Confidence 3556788888888888765221 1 2356688999999999999999988766554
No 391
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.52 E-value=0.15 Score=56.89 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.+++.++|+.|+||||.+.+++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 5799999999999999999999875
No 392
>PF13245 AAA_19: Part of AAA domain
Probab=95.51 E-value=0.034 Score=42.71 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=18.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.+++.|.|++|.|||+++.+.+..
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457888999999999666665555
No 393
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.49 E-value=0.046 Score=56.13 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=64.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhcccc-CceEE-Eeccccccccchhh-Hh--HH-HhhhcCCCCchhHHHHhcCcce
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEF-EGRCF-LSDIRKNSETGGGK-IL--SE-KLEVAGANIPHFTKERVRRMKV 125 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f-~~~~~-~~~~~~~~~~~~~~-~l--~~-~l~~~~~~~~~~l~~~l~~~~~ 125 (658)
.+.+.|+|+.|+||||++..+++.+.+.. +..+. +.+-.+ ....... .. .+ .++.+.....+.++..++..+=
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E-~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD 227 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIE-YILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPK 227 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCch-hccCCCceeecccccccCCCccCHHHHHHHhhccCCC
Confidence 45788999999999999999988764332 22332 221111 1111000 00 01 1111111225677888999999
Q ss_pred EEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchHHH
Q 047214 126 LIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRVL 164 (658)
Q Consensus 126 LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~~ 164 (658)
.|+++++.+.+.++..+.+. ..|..++-|-....+.
T Consensus 228 ~I~vGEiRd~et~~~al~aa---~TGH~v~tTlHa~s~~ 263 (372)
T TIGR02525 228 IIGVGEIRDLETFQAAVLAG---QSGHFCLGTLHVKSPG 263 (372)
T ss_pred EEeeCCCCCHHHHHHHHHHH---hcCCcEEEeeCCCCHH
Confidence 99999999998877655442 3455566665654433
No 394
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.49 E-value=0.027 Score=58.33 Aligned_cols=36 Identities=22% Similarity=0.153 Sum_probs=28.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCF 85 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~ 85 (658)
.....+.|.|.||+|||++.+++...++.....++.
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~ 55 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLV 55 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEE
Confidence 345788999999999999999999987765444433
No 395
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.46 E-value=0.019 Score=50.20 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=26.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccc-cCceEEEe
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFLS 87 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~-f~~~~~~~ 87 (658)
++|.|+|..|+|||||++.+++.+.++ +...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 478999999999999999999997644 44443443
No 396
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.46 E-value=0.02 Score=50.87 Aligned_cols=36 Identities=28% Similarity=0.514 Sum_probs=30.1
Q ss_pred cchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 34 NSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 34 ~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.+.+++|.+++. + +++++.|.+|||||||+..+...
T Consensus 23 ~~g~~~l~~~l~-----~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 23 GEGIEELKELLK-----G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTTHHHHHHHHT-----T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CcCHHHHHHHhc-----C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 345778888885 3 68899999999999999999875
No 397
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=95.45 E-value=0.057 Score=58.41 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=39.2
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.+...-
T Consensus 138 ~~lig~s~~~~~l~~~~~~~~-~~~~~vli~Ge~GtGK~~lA~~ih~~s 185 (469)
T PRK10923 138 TDIIGEAPAMQDVFRIIGRLS-RSSISVLINGESGTGKELVAHALHRHS 185 (469)
T ss_pred ccceecCHHHHHHHHHHHHHh-ccCCeEEEEeCCCCcHHHHHHHHHhcC
Confidence 469999999988888776433 445668899999999999999998863
No 398
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.082 Score=56.14 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
..++++|+|++|+||||++.+++..+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999887543
No 399
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.45 E-value=0.028 Score=54.45 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=37.6
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+..|.+.|...- ....++.|.|.+|+|||++|.+++....+....++|++
T Consensus 7 i~~LD~~l~GG~-~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 7 IPGMDEILHGGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred cHhHHHHhcCCC-cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 345555555433 45679999999999999999999887545567788887
No 400
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.42 E-value=0.0095 Score=33.32 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=14.7
Q ss_pred CccEEEecCCCcccccccccC
Q 047214 446 NLVELNLHFSKVEQLWEGKKE 466 (658)
Q Consensus 446 ~L~~L~L~~~~i~~l~~~~~~ 466 (658)
+|++|||++|+++.+|..+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777766543
No 401
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.41 E-value=0.014 Score=55.10 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
...+.++|+|++|+|||||+..+.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 56788999999999999999999754
No 402
>PRK00625 shikimate kinase; Provisional
Probab=95.39 E-value=0.014 Score=53.11 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.|.|+|++|+||||+++.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998854
No 403
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.36 E-value=0.23 Score=50.01 Aligned_cols=48 Identities=21% Similarity=0.068 Sum_probs=33.5
Q ss_pred eEEcCCCChHHHHHHHHHHhcCCCCCC-chhHHHHHHHHHHcCCCcchh
Q 047214 173 IYRVNGLEFEEAFEHFCNFAFEENHCP-EDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 173 ~~~l~~L~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plai 220 (658)
.+.+++++.+|+..++.-.....-... ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999876653332222 233445677777789999654
No 404
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.35 E-value=0.019 Score=63.18 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=48.7
Q ss_pred cCCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cccCceEEEec
Q 047214 22 VATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEFEGRCFLSD 88 (658)
Q Consensus 22 ~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~~~~~~~~ 88 (658)
.||..-.+++|.++.++.+...+.. .+.+.++|++|+||||+|+.+++.+. ..++..+|...
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~-----~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n 87 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQ-----RRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN 87 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHh-----CCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC
Confidence 3556668899999998888887764 23688999999999999999998854 34577777663
No 405
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.34 E-value=0.03 Score=58.47 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=38.1
Q ss_pred CCcccccchHhhHHHHhcc-------cC------CCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 28 NGLVGLNSRIEQIKPFLCM-------DL------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~-------~~------~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
..++|.+..++.+...+.. .. .-..+.+.++|++|+|||++|+.++......|
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 4589999998887655421 00 01235788999999999999999998764433
No 406
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.32 E-value=0.015 Score=54.04 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.++++|.|++|+||||+|+.+++.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999874
No 407
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.31 E-value=0.019 Score=53.38 Aligned_cols=33 Identities=24% Similarity=0.190 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 55 VGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+.|.|++|+|||++|.+++....+.-..++|++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999999888555556677776
No 408
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.31 E-value=0.026 Score=52.50 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRK 91 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~ 91 (658)
.|+|+|-||+||||+|..++.++.+.-...+.+.+..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 48899999999999999977774443223344433433
No 409
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.31 E-value=0.063 Score=49.12 Aligned_cols=115 Identities=19% Similarity=0.201 Sum_probs=60.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccc----cchh------------hHhHHHhhhcCCC-Cc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSE----TGGG------------KILSEKLEVAGAN-IP 113 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~----~~~~------------~~l~~~l~~~~~~-~~ 113 (658)
...+++|.|+.|.|||||++.++..... ....+++....-... ...+ ..+.+.+...+.. ..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qr 103 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQR 103 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHH
Confidence 3568999999999999999999876432 233344321100000 0000 0011111000000 02
Q ss_pred hhHHHHhcCcceEEEEeCCCCchh---hhhhhcccCCC-CCCCEEEEEecchHHHHh
Q 047214 114 HFTKERVRRMKVLIVLDDVNEVGQ---LEGLIGELDQF-GPGSRIVVTTRDKRVLEK 166 (658)
Q Consensus 114 ~~l~~~l~~~~~LlvlDdv~~~~~---~~~l~~~l~~~-~~~~~ilvttR~~~~~~~ 166 (658)
-.+...+-.++-++++|+-...-+ .+.+...+... ..|..+|++|.+......
T Consensus 104 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 104 LALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 234556667889999999754332 22333332221 236778999988775554
No 410
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=95.30 E-value=0.084 Score=56.99 Aligned_cols=49 Identities=20% Similarity=0.190 Sum_probs=38.3
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..++|......++.+.+.... .....+.|.|..|+||+++|+.+.....
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a-~~~~~vli~Ge~GtGK~~~A~~ih~~~~ 182 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLS-RSDITVLINGESGTGKELVARALHRHSP 182 (463)
T ss_pred cceeecCHHHHHHHHHHHHHh-CcCCeEEEECCCCCCHHHHHHHHHHhCC
Confidence 458998888888888776433 3345678999999999999999988643
No 411
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.05 Score=58.15 Aligned_cols=153 Identities=16% Similarity=0.212 Sum_probs=88.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCc-ceEEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRM-KVLIV 128 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~-~~Llv 128 (658)
..++-+.+||++|+|||-++++++++...+ ++.. ..-+++....++.+......+.+..+.+ +.++.
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~----~~~i--------~~peli~k~~gEte~~LR~~f~~a~k~~~psii~ 283 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEYGAF----LFLI--------NGPELISKFPGETESNLRKAFAEALKFQVPSIIF 283 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHhCce----eEec--------ccHHHHHhcccchHHHHHHHHHHHhccCCCeeEe
Confidence 346778899999999999999999985521 1111 1113444444444444466677777788 99999
Q ss_pred EeCCCCch------------hhhhhhcccCCCCCCCEE--EEEecchH-HHHhhc--CCCceEEcCCCChHHHHHHHHHH
Q 047214 129 LDDVNEVG------------QLEGLIGELDQFGPGSRI--VVTTRDKR-VLEKFR--GEKKIYRVNGLEFEEAFEHFCNF 191 (658)
Q Consensus 129 lDdv~~~~------------~~~~l~~~l~~~~~~~~i--lvttR~~~-~~~~~~--~~~~~~~l~~L~~~~~~~l~~~~ 191 (658)
+|+++..- ...+++.....++...++ |-+||.+. +..... ...+.+.+.--+...-.+.++..
T Consensus 284 IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l 363 (693)
T KOG0730|consen 284 IDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVL 363 (693)
T ss_pred HHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHH
Confidence 99985432 122333333333333333 34555543 222222 34556666666666666666655
Q ss_pred hcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 192 AFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
....... .......++..+.|.-
T Consensus 364 ~k~~~~~---~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 364 TKKMNLL---SDVDLEDIAVSTHGYV 386 (693)
T ss_pred HHhcCCc---chhhHHHHHHHccchh
Confidence 4322222 1234577888888876
No 412
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.28 E-value=0.014 Score=52.84 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 55 VGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
+.|+|.+|+||||+++++++.+++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998653
No 413
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.28 E-value=0.028 Score=52.72 Aligned_cols=37 Identities=22% Similarity=0.231 Sum_probs=28.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFL 86 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~ 86 (658)
....+++|+|.+|+||||+|+.+.......-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4567999999999999999999999864433334444
No 414
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.28 E-value=0.06 Score=56.07 Aligned_cols=37 Identities=22% Similarity=0.341 Sum_probs=28.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.+.+|.++|..|+||||.+.+++..+++....+..+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4689999999999999999999988665433444444
No 415
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.27 E-value=0.026 Score=51.80 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
...+++|.|.+|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999998653
No 416
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.26 E-value=0.058 Score=55.93 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
-.+++|.|++|.||||||+.+.--+
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~w 386 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGIW 386 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHccc
Confidence 4589999999999999999998764
No 417
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.26 E-value=0.07 Score=50.59 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.+.+.|+|+-|.||||+.+.++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999854
No 418
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.053 Score=52.53 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=25.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
.+..++|||++|.|||-+|+.++....-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 467899999999999999999998855443
No 419
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.23 E-value=0.12 Score=50.07 Aligned_cols=110 Identities=9% Similarity=0.127 Sum_probs=69.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh-hHhHH-HhhhcCCCCchhHHHHhcCcceEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG-KILSE-KLEVAGANIPHFTKERVRRMKVLI 127 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~~l~~-~l~~~~~~~~~~l~~~l~~~~~Ll 127 (658)
.+.+.|.++|+.|+||||-.......+-+++...|.-...+-.+-...- .++.| -++.+.......++..|+..+=+|
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVI 202 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVI 202 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEE
Confidence 5578999999999999988888888777666666543312211111111 23333 122222223788899999999999
Q ss_pred EEeCCCCchhhhhhhcccCCCCCCCEEEEEecchH
Q 047214 128 VLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKR 162 (658)
Q Consensus 128 vlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~ 162 (658)
++-++.+.+..+.-+.+ ...|.-|+-|-....
T Consensus 203 lvGEmRD~ETi~~ALtA---AETGHLV~~TLHT~s 234 (353)
T COG2805 203 LVGEMRDLETIRLALTA---AETGHLVFGTLHTNS 234 (353)
T ss_pred EEeccccHHHHHHHHHH---HhcCCEEEEeccccc
Confidence 99999888876554443 345666666644433
No 420
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.015 Score=49.83 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.+-|.|+|.+|+||||++.+++..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 345889999999999999999975
No 421
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.23 E-value=0.032 Score=54.71 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=30.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
....++.|+|++|+|||++|.+++......-..+++++
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 34678999999999999999999887544456777776
No 422
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.22 E-value=0.016 Score=50.48 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+|.|.|++|+||||+|+.+++...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 588999999999999999999854
No 423
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.21 E-value=0.015 Score=50.81 Aligned_cols=26 Identities=31% Similarity=0.678 Sum_probs=22.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 55 VGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
++|.|++|+|||||++.+++.....|
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccc
Confidence 68999999999999999998754443
No 424
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.016 Score=51.23 Aligned_cols=20 Identities=35% Similarity=0.611 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 047214 54 IVGIWGMGGIGKTTLATAIF 73 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~ 73 (658)
.++|+|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 47899999999999999998
No 425
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.20 E-value=0.049 Score=51.04 Aligned_cols=23 Identities=26% Similarity=0.118 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
++++|+|+.|.||||+++.++..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999999865
No 426
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.18 E-value=0.027 Score=56.38 Aligned_cols=36 Identities=33% Similarity=0.399 Sum_probs=29.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.+++.+.|.|||||||+|.+.+-...+....+.-++
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS 37 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS 37 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE
Confidence 478999999999999999998888666555555554
No 427
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.17 E-value=0.015 Score=53.49 Aligned_cols=23 Identities=48% Similarity=0.596 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999985
No 428
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.17 E-value=0.053 Score=53.64 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+.+.+|+|.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999988766554
No 429
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.16 E-value=0.032 Score=60.14 Aligned_cols=27 Identities=41% Similarity=0.474 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+..+++.++|++|.||||||.-++++.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc
Confidence 567899999999999999999999874
No 430
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.16 E-value=0.52 Score=46.61 Aligned_cols=68 Identities=12% Similarity=0.236 Sum_probs=46.2
Q ss_pred CcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHHhhcCCCceEEcCCCChHHHHHHHHH
Q 047214 122 RMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLEKFRGEKKIYRVNGLEFEEAFEHFCN 190 (658)
Q Consensus 122 ~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~~~~~~~~~~~l~~L~~~~~~~l~~~ 190 (658)
+++-++|+|+++... ....++..+-+-..+..+|++|.+. .+.....+.+..+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 456799999998775 4667777765545556666666554 45666657778888877 66666666643
No 431
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.16 E-value=0.015 Score=51.81 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
++.++|++|+||||+|+.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999999887
No 432
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.15 E-value=0.03 Score=56.01 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=45.1
Q ss_pred CCCcccccchHhhHHHHhcccC---CCCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDL---SDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~---~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
.++|+|.++.++++++.+...+ +...+++.+.|+-|.||||+|..+.+-..+.
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 4589999999999999987432 2567999999999999999999998877664
No 433
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.1 Score=47.58 Aligned_cols=114 Identities=16% Similarity=0.251 Sum_probs=59.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc-ccc----hh-------hHh----HH-HhhhcCCCCc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS-ETG----GG-------KIL----SE-KLEVAGANIP 113 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~-~~~----~~-------~~l----~~-~l~~~~~~~~ 113 (658)
...+++|.|+.|.|||||.+.++.-... ....+++....-.. ... .+ ... .+ ++. .++...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS-~G~~~r 104 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILS-GGQRQR 104 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhC-HHHHHH
Confidence 3568999999999999999999886442 23444443111000 000 00 000 00 000 000001
Q ss_pred hhHHHHhcCcceEEEEeCCCCch---hhhhhhcccCCCCCCCEEEEEecchHHHHh
Q 047214 114 HFTKERVRRMKVLIVLDDVNEVG---QLEGLIGELDQFGPGSRIVVTTRDKRVLEK 166 (658)
Q Consensus 114 ~~l~~~l~~~~~LlvlDdv~~~~---~~~~l~~~l~~~~~~~~ilvttR~~~~~~~ 166 (658)
-.+...+-.++-++++|+-...- ..+.+...+.....+..||++|.+......
T Consensus 105 l~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 22445556678899999975432 233333333222235678899988765543
No 434
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.14 E-value=0.02 Score=52.57 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
...+|+|-||=|+||||||+.++++..
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhC
Confidence 357899999999999999999999866
No 435
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.12 E-value=0.016 Score=53.71 Aligned_cols=23 Identities=35% Similarity=0.479 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+|.|.|++|+||||+|+.+++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999875
No 436
>PHA02244 ATPase-like protein
Probab=95.12 E-value=0.021 Score=57.66 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=32.3
Q ss_pred CCcccccchHh----hHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 28 NGLVGLNSRIE----QIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 28 ~~~vGR~~~~~----~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
..++|....+. .+.+|+.. ...|.|+|++|+|||++|+++++.....
T Consensus 96 ~~~ig~sp~~~~~~~ri~r~l~~-----~~PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 96 TTKIASNPTFHYETADIAKIVNA-----NIPVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CcccCCCHHHHHHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34666655554 34444432 3357789999999999999999985433
No 437
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.12 E-value=0.071 Score=48.77 Aligned_cols=114 Identities=19% Similarity=0.207 Sum_probs=57.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccc--cc---cchh----h-------HhHHHhhhcCCCCch
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKN--SE---TGGG----K-------ILSEKLEVAGANIPH 114 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~--~~---~~~~----~-------~l~~~l~~~~~~~~~ 114 (658)
...+++|.|+.|.|||||++.++..... ....+++....-. .. ...+ + -+.+.+=..++...-
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv 105 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRL 105 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHH
Confidence 3458999999999999999999986432 2333433311000 00 0000 0 000000000000022
Q ss_pred hHHHHhcCcceEEEEeCCCCch---hhhhhhcccCCC-CCCCEEEEEecchHHHH
Q 047214 115 FTKERVRRMKVLIVLDDVNEVG---QLEGLIGELDQF-GPGSRIVVTTRDKRVLE 165 (658)
Q Consensus 115 ~l~~~l~~~~~LlvlDdv~~~~---~~~~l~~~l~~~-~~~~~ilvttR~~~~~~ 165 (658)
.+...+-.++-++++|+-...- ..+.+...+... ..+..||++|.+.....
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 2445556678899999975432 222232222211 23667889888876553
No 438
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.10 E-value=0.019 Score=52.90 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+++|.|++|+||||+++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988753
No 439
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.09 E-value=0.022 Score=53.11 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..++.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999999873
No 440
>PRK15115 response regulator GlrR; Provisional
Probab=95.07 E-value=0.093 Score=56.30 Aligned_cols=49 Identities=27% Similarity=0.203 Sum_probs=36.4
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..++|+...+.++.+...... .....|.|+|.+|+|||++|+.+.+.-.
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a-~~~~~vli~Ge~GtGk~~lA~~ih~~s~ 182 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVA-QSDVSVLINGQSGTGKEILAQAIHNASP 182 (444)
T ss_pred hcccccCHHHHHHHHHHHhhc-cCCCeEEEEcCCcchHHHHHHHHHHhcC
Confidence 458888887777766554332 3345677999999999999999988643
No 441
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.11 Score=48.25 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=36.3
Q ss_pred HHHHhcCcceEEEEeCCCCchhhhhhh------cccCCCCCCCEEEEEecchHHHHhhcCCCceEE
Q 047214 116 TKERVRRMKVLIVLDDVNEVGQLEGLI------GELDQFGPGSRIVVTTRDKRVLEKFRGEKKIYR 175 (658)
Q Consensus 116 l~~~l~~~~~LlvlDdv~~~~~~~~l~------~~l~~~~~~~~ilvttR~~~~~~~~~~~~~~~~ 175 (658)
+.+.+--++-+.|||..++.-+.+.+. ..+. .++.-+++.|....+.... .+..++.
T Consensus 155 ilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i-~pD~vhv 217 (251)
T COG0396 155 ILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYI-KPDKVHV 217 (251)
T ss_pred HHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhc-CCCEEEE
Confidence 334444458899999998866544432 2222 3577788888888887776 4444433
No 442
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.07 E-value=0.044 Score=52.82 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=35.5
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..+.+.+...- .....+.|.|.+|+|||++|.+++.........++|+.
T Consensus 7 ~~LD~~l~GGi-~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 7 EGLDKLLEGGI-PRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hhHHHhhcCCC-cCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 44555554322 45678999999999999999998876444456777876
No 443
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.06 E-value=0.12 Score=54.13 Aligned_cols=110 Identities=13% Similarity=0.106 Sum_probs=70.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~Llvl 129 (658)
...+.+.++|+.|+||||....+..........++-+. -+-.....++..+. .-...+...++.++..|+..+=+|++
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiE-DPVE~~~~gI~Q~q-VN~k~gltfa~~LRa~LRqDPDvImV 333 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIE-DPVEYQLPGINQVQ-VNPKIGLTFARALRAILRQDPDVIMV 333 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEee-CCeeeecCCcceee-cccccCCCHHHHHHHHhccCCCeEEE
Confidence 45789999999999999999999998766655544443 12122222220000 00122233378889999999999999
Q ss_pred eCCCCchhhhhhhcccCCCCCCCEEEEEecchHHH
Q 047214 130 DDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRVL 164 (658)
Q Consensus 130 Ddv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~~ 164 (658)
..+.+.+.-+-...+. ..|.-|+-|-......
T Consensus 334 GEIRD~ETAeiavqAa---lTGHLVlSTlHtnda~ 365 (500)
T COG2804 334 GEIRDLETAEIAVQAA---LTGHLVLSTLHTNDAP 365 (500)
T ss_pred eccCCHHHHHHHHHHH---hcCCeEeeecccCchH
Confidence 9999988766655542 2466666555544433
No 444
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.05 E-value=0.087 Score=53.12 Aligned_cols=36 Identities=17% Similarity=0.288 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEE
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFL 86 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~ 86 (658)
+..+++++|++|+||||++..++..+...-..+..+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li 148 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA 148 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence 468999999999999999999999866543333333
No 445
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.04 E-value=0.024 Score=56.94 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=27.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+++.+.|.|||||||+|.+.+-...+.-..+..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 58999999999999999999888665555555554
No 446
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.03 E-value=0.041 Score=49.74 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=25.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
....+++|+|.+|+|||||++++......
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 34679999999999999999999988654
No 447
>PRK06217 hypothetical protein; Validated
Probab=95.03 E-value=0.019 Score=53.11 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.|+|.|.+|+||||+|+++++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999999853
No 448
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.02 E-value=0.088 Score=59.76 Aligned_cols=183 Identities=11% Similarity=0.058 Sum_probs=87.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh-cc-c--c-Cce--EEEeccccccccchh-hHhHHHhhhcCCCCchhHHHHhc-
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF-SS-E--F-EGR--CFLSDIRKNSETGGG-KILSEKLEVAGANIPHFTKERVR- 121 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~-~~-~--f-~~~--~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~l~~~l~- 121 (658)
+.++++|+|+.|.||||+.+.++... .. . | +.. ..+......+..... +.+.+.+..-... ...+...+.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~-m~~~~~il~~ 399 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGH-MKNISAILSK 399 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhHHHHH-HHHHHHHHHh
Confidence 35789999999999999999988761 11 0 0 000 000000000000000 1111110000000 222333333
Q ss_pred -CcceEEEEeCCCCchh---hh----hhhcccCCCCCCCEEEEEecchHHHHhhcCCCce--EEcCCCChHHHHHHHHHH
Q 047214 122 -RMKVLIVLDDVNEVGQ---LE----GLIGELDQFGPGSRIVVTTRDKRVLEKFRGEKKI--YRVNGLEFEEAFEHFCNF 191 (658)
Q Consensus 122 -~~~~LlvlDdv~~~~~---~~----~l~~~l~~~~~~~~ilvttR~~~~~~~~~~~~~~--~~l~~L~~~~~~~l~~~~ 191 (658)
..+-|+++|+.-..-+ .. .++..+. ..|+.+|+||....+.........+ ..+ .++.+ ......+.
T Consensus 400 ~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~-~~d~~-~l~p~Ykl 475 (771)
T TIGR01069 400 TTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASV-LFDEE-TLSPTYKL 475 (771)
T ss_pred cCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEE-EEcCC-CCceEEEE
Confidence 3789999999855332 22 2333332 3578999999998764443111111 111 11111 11111111
Q ss_pred hcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhcccccccHHHHHHHHHHHhh
Q 047214 192 AFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCLKRKSHWENLLHDLNR 244 (658)
Q Consensus 192 ~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~~~~l~~ 244 (658)
. .+.+. ...+-.|++.+ |+|-.+..-|..+......+...++.++..
T Consensus 476 ~--~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 476 L--KGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred C--CCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 11111 23466666655 888888888887766655566666666544
No 449
>PRK05973 replicative DNA helicase; Provisional
Probab=95.02 E-value=0.04 Score=52.63 Aligned_cols=38 Identities=18% Similarity=0.132 Sum_probs=30.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
....++.|.|.+|+|||+++.+++.........+++++
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34568899999999999999999988544556666765
No 450
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.01 E-value=0.072 Score=53.33 Aligned_cols=87 Identities=20% Similarity=0.210 Sum_probs=51.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhcccc--CceEEEecccccccc-ch-hhHhHHHhhhcCCCCchhHHHHhcCcceEE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEF--EGRCFLSDIRKNSET-GG-GKILSEKLEVAGANIPHFTKERVRRMKVLI 127 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f--~~~~~~~~~~~~~~~-~~-~~~l~~~l~~~~~~~~~~l~~~l~~~~~Ll 127 (658)
.+.+.|+|..|+||||+++.++..+.+.. ..++-+.+..+.... .. +.+. .........+.++..|+..+=.+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~---~~~~~~~~~~~l~~aLR~~pD~i 208 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLR---TSDDAISMTRLLKATLRLRPDRI 208 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEE---ecCCCCCHHHHHHHHhcCCCCEE
Confidence 34678999999999999999998865421 223323322221110 00 0100 00111123567778888888889
Q ss_pred EEeCCCCchhhhhh
Q 047214 128 VLDDVNEVGQLEGL 141 (658)
Q Consensus 128 vlDdv~~~~~~~~l 141 (658)
|+.++...+.++.+
T Consensus 209 ivGEiR~~ea~~~l 222 (299)
T TIGR02782 209 IVGEVRGGEALDLL 222 (299)
T ss_pred EEeccCCHHHHHHH
Confidence 99999888766543
No 451
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.01 E-value=0.06 Score=54.34 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.0
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
.++.+.+.... ++..+|+|.|.+|+||||++..+...+++.
T Consensus 43 ~~l~~~~~~~~-~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHT-GNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcC-CCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 34444443222 568899999999999999999998887654
No 452
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=95.00 E-value=0.078 Score=50.40 Aligned_cols=23 Identities=30% Similarity=0.189 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFN 74 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~ 74 (658)
.++++|+|+.|.||||+.+.++.
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999875
No 453
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.99 E-value=0.1 Score=59.42 Aligned_cols=177 Identities=14% Similarity=0.055 Sum_probs=88.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh--cc--cc-C----------ceEEEeccccccccchh-hHhHHHhhhcCCCCc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF--SS--EF-E----------GRCFLSDIRKNSETGGG-KILSEKLEVAGANIP 113 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~--~~--~f-~----------~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~ 113 (658)
.+.+++.|+|+.+.||||+.+.++-.+ .+ .| + ..++.. +.. ...+ +-+...-.. .
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i~~~-ig~---~~si~~~lStfS~~-----m 395 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEIFAD-IGD---EQSIEQSLSTFSGH-----M 395 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceEEEe-cCC---ccchhhchhHHHHH-----H
Confidence 356789999999999999999987651 10 01 0 011111 111 0000 000000000 2
Q ss_pred hhHHHHhc--CcceEEEEeCCCCchh---h----hhhhcccCCCCCCCEEEEEecchHHHHhhcCCCceEEcC-CCChHH
Q 047214 114 HFTKERVR--RMKVLIVLDDVNEVGQ---L----EGLIGELDQFGPGSRIVVTTRDKRVLEKFRGEKKIYRVN-GLEFEE 183 (658)
Q Consensus 114 ~~l~~~l~--~~~~LlvlDdv~~~~~---~----~~l~~~l~~~~~~~~ilvttR~~~~~~~~~~~~~~~~l~-~L~~~~ 183 (658)
..+...+. ..+-|+++|+.....+ - ..++..+. ..++.+|+||....+.............. .++. +
T Consensus 396 ~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~-~ 472 (782)
T PRK00409 396 TNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDE-E 472 (782)
T ss_pred HHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEec-C
Confidence 22233332 3678999999854332 2 22233332 34789999999987665541211111110 0111 1
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhcccccccHHHHHHHHHHHhh
Q 047214 184 AFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCLKRKSHWENLLHDLNR 244 (658)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~~~~l~~ 244 (658)
......+.. .+.+. ...+-.|++.+ |+|-.+..-|..+..........++.++..
T Consensus 473 ~l~~~Ykl~--~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 473 TLRPTYRLL--IGIPG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred cCcEEEEEe--eCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 111111111 11111 23466676665 888888888877766655566666666544
No 454
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.97 E-value=0.075 Score=51.65 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+-+-++|.|.+|+|||+|+..++++..
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~ 94 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAG 94 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhh
Confidence 345678999999999999999988753
No 455
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.97 E-value=0.018 Score=54.16 Aligned_cols=23 Identities=52% Similarity=0.752 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+|+|.|++|+||||+++.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 456
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.97 E-value=0.076 Score=53.94 Aligned_cols=60 Identities=15% Similarity=0.117 Sum_probs=39.2
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc------ccCceEEEeccccccccchh
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS------EFEGRCFLSDIRKNSETGGG 98 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~------~f~~~~~~~~~~~~~~~~~~ 98 (658)
+..|.++|...- ....++-|+|.+|+|||+++..++..+.- .-..++|+. ....+....+
T Consensus 109 ~~~LD~lL~GG~-~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyId-tE~~f~~eRl 174 (342)
T PLN03186 109 SRELDKILEGGI-ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYID-TEGTFRPQRL 174 (342)
T ss_pred CHHHHHhhcCCC-cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEE-CCCCccHHHH
Confidence 456666665432 45678889999999999999988865321 112567766 5554444444
No 457
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.97 E-value=0.13 Score=46.21 Aligned_cols=112 Identities=21% Similarity=0.248 Sum_probs=60.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhh----hc-CCCCchhHHHHhcCcceE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLE----VA-GANIPHFTKERVRRMKVL 126 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~----~~-~~~~~~~l~~~l~~~~~L 126 (658)
..+++|.|..|.|||||++.++..... ....+++.... ..... .......+. .. ++...-.+...+-..+-+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~~-~~~~~-~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGKD-IAKLP-LEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCEE-cccCC-HHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 468999999999999999999886542 34445544211 11000 000000000 00 010022345555667889
Q ss_pred EEEeCCCCch---hhhhhhcccCCC-CCCCEEEEEecchHHHHh
Q 047214 127 IVLDDVNEVG---QLEGLIGELDQF-GPGSRIVVTTRDKRVLEK 166 (658)
Q Consensus 127 lvlDdv~~~~---~~~~l~~~l~~~-~~~~~ilvttR~~~~~~~ 166 (658)
+++|+....- ....+...+... ..+..++++|.+......
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 9999985432 233333322211 125678899888766555
No 458
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.96 E-value=0.095 Score=53.20 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=37.8
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc--c----ccCceEEEeccccccccchh
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS--S----EFEGRCFLSDIRKNSETGGG 98 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~--~----~f~~~~~~~~~~~~~~~~~~ 98 (658)
..|.++|...- ....+.-|+|.+|+|||+|+.+++-... . .-..++|+. ....+....+
T Consensus 113 ~~LD~lLgGGi-~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId-TE~tF~peRl 177 (344)
T PLN03187 113 QALDELLGGGI-ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID-TEGTFRPDRI 177 (344)
T ss_pred HhHHhhcCCCC-CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE-cCCCCCHHHH
Confidence 45555554322 4567888999999999999999876532 1 123566666 5554454444
No 459
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.95 E-value=0.034 Score=55.46 Aligned_cols=47 Identities=17% Similarity=0.096 Sum_probs=34.7
Q ss_pred CcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 29 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
.++=..+....+..++.. .+.|.|.|++|+|||++|+.++....-.|
T Consensus 46 ~y~f~~~~~~~vl~~l~~-----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY-----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CccCCHHHHHHHHHHHhc-----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 344444456667777753 24588999999999999999999876443
No 460
>PRK13947 shikimate kinase; Provisional
Probab=94.94 E-value=0.022 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.|.|.|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999864
No 461
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.022 Score=52.12 Aligned_cols=22 Identities=36% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.|.|.|.+|+||||+|++++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3779999999999999999998
No 462
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.029 Score=49.21 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..+++|+|.+|+||||+.+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 6799999999999999999988875
No 463
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=94.92 E-value=0.13 Score=47.80 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=19.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
--|++.|.+|+|||+|+.++...
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~ 29 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDG 29 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34669999999999999999874
No 464
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=94.92 E-value=0.097 Score=59.44 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=52.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhc-----CcceE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVR-----RMKVL 126 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~-----~~~~L 126 (658)
.+++.|+|.+|+||||+++.+...++.....++.+. ... ...+.+.+..+.........+...-. .+.-+
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~A-pTg----~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~l 442 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAA-LSG----KAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDV 442 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEe-CcH----HHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcE
Confidence 358889999999999999999887665432333322 111 11122222111111100111111111 24579
Q ss_pred EEEeCCCCch--hhhhhhcccCCCCCCCEEEEEe
Q 047214 127 IVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTT 158 (658)
Q Consensus 127 lvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvtt 158 (658)
||+|++-... ....++.... ..++++|+.-
T Consensus 443 lIvDEasMv~~~~~~~Ll~~~~--~~~~kliLVG 474 (744)
T TIGR02768 443 LVIDEAGMVGSRQMARVLKEAE--EAGAKVVLVG 474 (744)
T ss_pred EEEECcccCCHHHHHHHHHHHH--hcCCEEEEEC
Confidence 9999986654 3444444322 3577777664
No 465
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.91 E-value=0.11 Score=50.77 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=32.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
...+++=|+|+.|+|||++|.+++-.+......++|+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 55678889999999999999999998777777788877
No 466
>PRK15453 phosphoribulokinase; Provisional
Probab=94.89 E-value=0.04 Score=53.53 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=25.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
.+..+|+|.|.+|+||||+|+.+++.+..
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45679999999999999999999987654
No 467
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.89 E-value=0.021 Score=50.62 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+|.|.|++|+||||+|++++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 468
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=94.88 E-value=0.17 Score=47.52 Aligned_cols=92 Identities=20% Similarity=0.186 Sum_probs=44.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCC-----------chhHHH
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANI-----------PHFTKE 118 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----------~~~l~~ 118 (658)
.++.++.+.|.+|+||||++..+..... ....+.+. ....-. .+-...+......... .+.+.+
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~-~D~~r~--~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 87 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID-ADEFRQ--FHPDYDELLKADPDEASELTQKEASRLAEKLIE 87 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE--GGGGGG--GSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe-hHHHHH--hccchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999988753 23444444 111100 0000111111111111 344455
Q ss_pred HhcCcceEEEEeCCCCch-hhhhhhcccC
Q 047214 119 RVRRMKVLIVLDDVNEVG-QLEGLIGELD 146 (658)
Q Consensus 119 ~l~~~~~LlvlDdv~~~~-~~~~l~~~l~ 146 (658)
..-.+++=+|+|..-... ....+...+.
T Consensus 88 ~a~~~~~nii~E~tl~~~~~~~~~~~~~k 116 (199)
T PF06414_consen 88 YAIENRYNIIFEGTLSNPSKLRKLIREAK 116 (199)
T ss_dssp HHHHCT--EEEE--TTSSHHHHHHHHHHH
T ss_pred HHHHcCCCEEEecCCCChhHHHHHHHHHH
Confidence 555667788889876543 3443554444
No 469
>PRK13948 shikimate kinase; Provisional
Probab=94.87 E-value=0.027 Score=51.75 Aligned_cols=29 Identities=21% Similarity=0.286 Sum_probs=25.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
...+.|.++|+.|+||||+++.+++...-
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45678999999999999999999998643
No 470
>PRK13768 GTPase; Provisional
Probab=94.86 E-value=0.036 Score=54.09 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.+++|.|+||+||||++..++.........++.+.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~ 37 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVN 37 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence 57889999999999999999988665544555544
No 471
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.86 E-value=0.028 Score=57.41 Aligned_cols=49 Identities=31% Similarity=0.241 Sum_probs=39.6
Q ss_pred CCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
...++|+++.+..+...+.. .+.+.+.|.+|+|||++|+.+++...-.|
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~-----~~~vll~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 23 EKVVVGDEEVIELALLALLA-----GGHVLLEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred CCeeeccHHHHHHHHHHHHc-----CCCEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 44599999888888777754 23588999999999999999999876443
No 472
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.86 E-value=0.046 Score=46.20 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
....+|.+.|.=|+||||+++.+++..
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 345799999999999999999999984
No 473
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.038 Score=52.82 Aligned_cols=53 Identities=36% Similarity=0.477 Sum_probs=38.3
Q ss_pred CCcccccchHhhHHHHhccc---------CC-CCeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 28 NGLVGLNSRIEQIKPFLCMD---------LS-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~---------~~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
...=|-+..+++|.+.++-. .+ ..++-|.+||.+|.|||-||++++++....|
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 34456777777777765521 11 3456678999999999999999999866655
No 474
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.85 E-value=0.16 Score=43.68 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=31.3
Q ss_pred CchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCC-CCCCcccccceEEecccCCCCCCCCC--CCCCccEEEecC
Q 047214 378 DSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPD-GLDYLPKNLRYLHWDKYPLRTLPSNF--KPENLVELNLHF 454 (658)
Q Consensus 378 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~-~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~ 454 (658)
+...|.++++|+.+.+.. .+ ..++. .+.... +|+.+.+..+ +..++... ++..|+.+.+..
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~-------------~~I~~~~F~~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TI-------------KKIGENAFSNCT-SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN 67 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T---------------EE-TTTTTT-T-T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS
T ss_pred CHHHHhCCCCCCEEEECC-Ce-------------eEeChhhccccc-cccccccccc-ccccceeeeecccccccccccc
Confidence 345566666666666653 22 12332 233333 5666665552 55554433 444555555543
Q ss_pred CCccccccc-ccCCCCccEEecc
Q 047214 455 SKVEQLWEG-KKEAFKLKSINLS 476 (658)
Q Consensus 455 ~~i~~l~~~-~~~l~~L~~L~l~ 476 (658)
.+..++.. +..+.+|+.+.+.
T Consensus 68 -~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 68 -NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp -TT-EE-TTTTTT-TTECEEEET
T ss_pred -cccccccccccccccccccccC
Confidence 33333222 3334444444443
No 475
>PRK10436 hypothetical protein; Provisional
Probab=94.82 E-value=0.084 Score=55.98 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=64.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhh-hcCCCCchhHHHHhcCcceEEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLE-VAGANIPHFTKERVRRMKVLIV 128 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~l~~~l~~~~~Llv 128 (658)
...+.+.|+|+.|.||||....+.......-..++-+. -+.......+.... +. ..+.+....++..|+..+=.|+
T Consensus 216 ~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiE-DPvE~~l~gi~Q~~--v~~~~g~~f~~~lr~~LR~dPDvI~ 292 (462)
T PRK10436 216 QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVE-DPVEIPLAGINQTQ--IHPKAGLTFQRVLRALLRQDPDVIM 292 (462)
T ss_pred hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEec-CCccccCCCcceEe--eCCccCcCHHHHHHHHhcCCCCEEE
Confidence 34678999999999999999887776543322222222 11111111110000 11 1122337788889999999999
Q ss_pred EeCCCCchhhhhhhcccCCCCCCCEEEEEecchHH
Q 047214 129 LDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRV 163 (658)
Q Consensus 129 lDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~ 163 (658)
+.++.+.+..+..+.+. ..|..++-|-.....
T Consensus 293 vGEIRD~eta~~al~AA---~TGHlVlsTlHa~~a 324 (462)
T PRK10436 293 VGEIRDGETAEIAIKAA---QTGHLVLSTLHTNST 324 (462)
T ss_pred ECCCCCHHHHHHHHHHH---HcCCcEEEeeccCCh
Confidence 99999998766544442 235556666555443
No 476
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.82 E-value=0.067 Score=52.75 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.+-+|.|.|.+|+||||+|.++++++
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999886
No 477
>PTZ00035 Rad51 protein; Provisional
Probab=94.80 E-value=0.11 Score=52.81 Aligned_cols=39 Identities=23% Similarity=0.279 Sum_probs=29.7
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...+.++|...- ....++.|+|.+|+|||+++..++...
T Consensus 104 ~~~LD~lLgGGi-~~G~iteI~G~~GsGKT~l~~~l~~~~ 142 (337)
T PTZ00035 104 STQLDKLLGGGI-ETGSITELFGEFRTGKTQLCHTLCVTC 142 (337)
T ss_pred cHHHHHHhCCCC-CCCeEEEEECCCCCchhHHHHHHHHHh
Confidence 456666665432 456789999999999999999988654
No 478
>PRK04328 hypothetical protein; Provisional
Probab=94.79 E-value=0.052 Score=52.93 Aligned_cols=49 Identities=14% Similarity=0.140 Sum_probs=36.4
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..|.+.|...- ....++.|.|.+|+|||+++.+++.........++|++
T Consensus 10 ~~LD~lL~GGi-p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 10 PGMDEILYGGI-PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hhHHHHhcCCC-cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 34555554322 35678999999999999999999887545567778877
No 479
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.78 E-value=0.039 Score=49.08 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=29.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.++++|+|..|+|||||+.++....+.+.-.+..+.
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iK 37 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK 37 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEE
Confidence 468999999999999999999999877655555544
No 480
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.77 E-value=0.053 Score=52.46 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=36.9
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+..+.+.|...- ....++.|+|.+|+|||+++.+++......-..++|+.
T Consensus 11 i~~LD~~l~gG~-~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 11 NEELDRKLGGGI-PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CHHHHHhhCCCC-cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 345555554332 45678999999999999999999877544556777777
No 481
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.76 E-value=0.036 Score=55.13 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=26.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+.|+|+|-|||||||++..++....+.-..+..+.
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD 35 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVG 35 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36889999999999999999988655433344443
No 482
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.76 E-value=0.021 Score=54.47 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+|+|.|.+|+||||+|+.++..+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999998865
No 483
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.75 E-value=0.025 Score=54.41 Aligned_cols=49 Identities=27% Similarity=0.204 Sum_probs=34.5
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc-cCceEEEe
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFLS 87 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f~~~~~~~ 87 (658)
..+.+.|...- ....++.|.|++|+|||+++.+++...... -+.++|++
T Consensus 6 ~~LD~~l~GGi-p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 6 PGLDELLGGGI-PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp TTHHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred hhHHHhhcCCC-CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 34555554322 345689999999999999999999875444 56777877
No 484
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=94.74 E-value=0.053 Score=56.37 Aligned_cols=54 Identities=19% Similarity=0.210 Sum_probs=38.8
Q ss_pred CCCcccccchHhhHHHHhc-------c---cCC-----CCeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 27 SNGLVGLNSRIEQIKPFLC-------M---DLS-----DTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~-------~---~~~-----~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
...++|.++.++.+...+. . ... -....+.++|++|+|||++|+.++....-.|
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 3557999999988876551 1 000 0135799999999999999999998764333
No 485
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.73 E-value=0.094 Score=49.87 Aligned_cols=112 Identities=13% Similarity=-0.004 Sum_probs=58.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHh-hccccCceEEEeccccccccchh-hHhHHHhhhc----CCCC----chhHHHHh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQ-FSSEFEGRCFLSDIRKNSETGGG-KILSEKLEVA----GANI----PHFTKERV 120 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~-~~l~~~l~~~----~~~~----~~~l~~~l 120 (658)
..+++.|.|+.|.||||+.+.++.. +..+-...+|...+.- ... +++..+-..+ +... ..++.+.+
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~----~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 105 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATL----SIFDSVLTRMGASDSIQHGMSTFMVELSETSHIL 105 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEE----eccceEEEEecCccccccccchHHHHHHHHHHHH
Confidence 4568899999999999999998883 2222122222210000 000 0000000000 0000 23334444
Q ss_pred c--CcceEEEEeCCCCch---h----hhhhhcccCCCCCCCEEEEEecchHHHHhh
Q 047214 121 R--RMKVLIVLDDVNEVG---Q----LEGLIGELDQFGPGSRIVVTTRDKRVLEKF 167 (658)
Q Consensus 121 ~--~~~~LlvlDdv~~~~---~----~~~l~~~l~~~~~~~~ilvttR~~~~~~~~ 167 (658)
+ ..+-|+++|+.-... + ...++..+.. ..++.+|++|....+....
T Consensus 106 ~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 106 SNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHHH
Confidence 3 368999999973221 1 2233444433 2578999999998876544
No 486
>PRK13236 nitrogenase reductase; Reviewed
Probab=94.72 E-value=0.05 Score=54.57 Aligned_cols=38 Identities=18% Similarity=0.413 Sum_probs=30.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.+.+++.+.|-|||||||.|..++....+.-..+..+.
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD 41 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVG 41 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 45799999999999999999998888666544454444
No 487
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.72 E-value=0.084 Score=55.56 Aligned_cols=40 Identities=23% Similarity=0.386 Sum_probs=29.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhcc-ccCceEEEecccc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGRCFLSDIRK 91 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f~~~~~~~~~~~ 91 (658)
.-+-++|.|.+|+|||+|+..+++.... +-+.++++. +.+
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~l-iGE 182 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAG-VGE 182 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEc-CCc
Confidence 4567899999999999999999988653 334445443 443
No 488
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.69 E-value=0.14 Score=50.74 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=29.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccc-cCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f~~~~~~~ 87 (658)
...++.|.|.+|+|||+++.+++...... -..++|++
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 45588899999999999999999885433 45677776
No 489
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.68 E-value=0.039 Score=44.64 Aligned_cols=25 Identities=36% Similarity=0.650 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
++.+.|.+|+||||++..++..+.+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999765
No 490
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.68 E-value=0.061 Score=58.80 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=39.7
Q ss_pred CCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
.+..+.|.+..+.|.++..... ....+|.|+|++|+||||+|+.++.....
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~-~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRH-KQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CChhhcHHHHHHHHHHHhcccc-CCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3456777777777777766544 45668999999999999999999998654
No 491
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=94.68 E-value=0.04 Score=52.33 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=26.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
|+|+|.|.||+||||++..++..+.+.-..+..+.
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD 35 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVG 35 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEe
Confidence 46889999999999999998888655433344343
No 492
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.67 E-value=0.086 Score=48.82 Aligned_cols=112 Identities=14% Similarity=0.047 Sum_probs=54.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh-hccccCceEEEe-----ccccccccchh-hHhHHHhhhcCCCCchhHHHHhcC--cc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQ-FSSEFEGRCFLS-----DIRKNSETGGG-KILSEKLEVAGANIPHFTKERVRR--MK 124 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~-~~~~f~~~~~~~-----~~~~~~~~~~~-~~l~~~l~~~~~~~~~~l~~~l~~--~~ 124 (658)
++.|+|+-|.||||+.+.++.. +-.+-...++.. .+......... +.+.+-.+.-. ....++...+.. ++
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs-~~~~~l~~~l~~~~~~ 79 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFM-VEMKETANILKNATEN 79 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHH-HHHHHHHHHHHhCCCC
Confidence 4679999999999999999854 111111111110 00000000000 00000000000 002334444544 78
Q ss_pred eEEEEeCCCCchh-------hhhhhcccCCCCCCCEEEEEecchHHHHhh
Q 047214 125 VLIVLDDVNEVGQ-------LEGLIGELDQFGPGSRIVVTTRDKRVLEKF 167 (658)
Q Consensus 125 ~LlvlDdv~~~~~-------~~~l~~~l~~~~~~~~ilvttR~~~~~~~~ 167 (658)
-++++|+....-+ ...+...+.. ..+..+|++|...++...+
T Consensus 80 ~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 80 SLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLA 128 (185)
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHh
Confidence 9999999854322 1222232221 2367899999998766554
No 493
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=94.66 E-value=0.031 Score=51.75 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=24.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccC
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFE 81 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~ 81 (658)
.+.++|.|++|+||+|++.++++.....|.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 468999999999999999999987644443
No 494
>PRK13764 ATPase; Provisional
Probab=94.65 E-value=0.1 Score=56.88 Aligned_cols=86 Identities=12% Similarity=0.074 Sum_probs=51.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeC
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDD 131 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDd 131 (658)
.+.+.|+|++|+||||++..++..+..+-..+..+.+..+...... +.+. .....+........|+.++=.+++|+
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~---i~q~-~~~~~~~~~~~~~lLR~rPD~IivGE 332 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPE---ITQY-SKLEGSMEETADILLLVRPDYTIYDE 332 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCc---ceEE-eeccccHHHHHHHHHhhCCCEEEECC
Confidence 3458899999999999999999886544333323332222211111 1110 00111112223334777899999999
Q ss_pred CCCchhhhhh
Q 047214 132 VNEVGQLEGL 141 (658)
Q Consensus 132 v~~~~~~~~l 141 (658)
+.+.+.++.+
T Consensus 333 iRd~Et~~~~ 342 (602)
T PRK13764 333 MRKTEDFKIF 342 (602)
T ss_pred CCCHHHHHHH
Confidence 9999988765
No 495
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.64 E-value=0.03 Score=47.45 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 047214 55 VGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~ 75 (658)
|.|.|..|+|||||.+.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 679999999999999999986
No 496
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.64 E-value=0.039 Score=49.29 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
+++|+|+.|+||||++.+++..+++.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999997654
No 497
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.61 E-value=0.099 Score=53.06 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=53.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccc---cchhhHhHHHhh--hcCCCCchhHHHHhcCcce
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSE---TGGGKILSEKLE--VAGANIPHFTKERVRRMKV 125 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~---~~~~~~l~~~l~--~~~~~~~~~l~~~l~~~~~ 125 (658)
....+.|+|..|+||||++.++...+... +.++-+.+..+... .....++...-+ ....+..+.++..++..+=
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~-~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD 237 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAI-ERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPD 237 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCC-CeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCC
Confidence 35679999999999999999998876543 22222222222111 000111111000 0111225677888888999
Q ss_pred EEEEeCCCCchhhhhh
Q 047214 126 LIVLDDVNEVGQLEGL 141 (658)
Q Consensus 126 LlvlDdv~~~~~~~~l 141 (658)
.+|++++...+.+..+
T Consensus 238 ~IivGEiR~~ea~~~l 253 (332)
T PRK13900 238 RIIVGELRGAEAFSFL 253 (332)
T ss_pred eEEEEecCCHHHHHHH
Confidence 9999999988777543
No 498
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.58 E-value=0.36 Score=44.95 Aligned_cols=106 Identities=18% Similarity=0.172 Sum_probs=60.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhcc---ccC-ceEEEeccccccccc-hh---hHhHHHhhhc--CCCC-chhHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSS---EFE-GRCFLSDIRKNSETG-GG---KILSEKLEVA--GANI-PHFTKERV 120 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~---~f~-~~~~~~~~~~~~~~~-~~---~~l~~~l~~~--~~~~-~~~l~~~l 120 (658)
---..|.|++|+||||+.+.+++-... .|. ..+-+ +.+.+... .+ -......+.+ +... ++-+...+
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~I--iDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGI--IDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEE--EeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 344679999999999999999987443 232 22222 11111111 00 1111111111 1111 33444445
Q ss_pred cC-cceEEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchH
Q 047214 121 RR-MKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKR 162 (658)
Q Consensus 121 ~~-~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~ 162 (658)
++ .+=++|+|++-..++-..++.++ ..|.+++.|..-..
T Consensus 215 rsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ 254 (308)
T COG3854 215 RSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNG 254 (308)
T ss_pred HhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeecccc
Confidence 44 58899999998888777776663 35888888876543
No 499
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=94.56 E-value=0.047 Score=54.40 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=27.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
++++|+|-|||||||+|..++....+....+..+.
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD 36 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVG 36 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEe
Confidence 46888899999999999999988665544455554
No 500
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.55 E-value=0.18 Score=46.64 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=25.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
....+++|.|.+|+||||+|+.+......
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999988643
Done!