Query 047214
Match_columns 658
No_of_seqs 277 out of 3356
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 15:25:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047214.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047214hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.9E-39 2E-43 350.1 21.5 291 31-334 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 4.8E-34 1.6E-38 344.6 20.8 297 23-332 119-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 3.5E-32 1.2E-36 301.3 19.5 292 23-329 119-449 (591)
4 1vt4_I APAF-1 related killer D 100.0 1E-32 3.6E-37 303.8 14.9 268 28-325 128-436 (1221)
5 2id5_A Lingo-1, leucine rich r 99.9 3.5E-24 1.2E-28 231.0 24.7 280 361-658 33-332 (477)
6 4fmz_A Internalin; leucine ric 99.9 7.9E-24 2.7E-28 218.3 24.6 270 361-658 45-345 (347)
7 3o6n_A APL1; leucine-rich repe 99.9 8.5E-24 2.9E-28 221.6 23.4 273 362-658 47-351 (390)
8 3oja_B Anopheles plasmodium-re 99.9 1E-23 3.5E-28 233.3 23.4 263 375-658 64-357 (597)
9 4ecn_A Leucine-rich repeat pro 99.9 7.3E-24 2.5E-28 240.0 20.4 290 360-658 491-839 (876)
10 4eco_A Uncharacterized protein 99.9 6E-24 2.1E-28 236.5 18.6 289 360-658 249-599 (636)
11 4fmz_A Internalin; leucine ric 99.9 1.4E-22 4.7E-27 209.0 24.7 210 418-636 128-344 (347)
12 4ecn_A Leucine-rich repeat pro 99.9 2.3E-23 7.8E-28 235.9 19.4 259 382-658 487-818 (876)
13 4fcg_A Uncharacterized protein 99.9 3.7E-23 1.2E-27 210.8 18.5 215 384-613 79-310 (328)
14 3o6n_A APL1; leucine-rich repe 99.9 2E-22 6.7E-27 211.3 24.4 255 360-636 69-350 (390)
15 3rgz_A Protein brassinosteroid 99.9 2.6E-23 8.9E-28 236.8 18.7 228 414-643 410-722 (768)
16 4eco_A Uncharacterized protein 99.9 1.9E-23 6.6E-28 232.4 17.2 200 413-614 197-443 (636)
17 3rgz_A Protein brassinosteroid 99.9 5.1E-23 1.8E-27 234.4 19.6 295 361-658 319-716 (768)
18 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-22 9.5E-27 213.5 23.9 276 362-658 44-351 (457)
19 3t6q_A CD180 antigen; protein- 99.9 2.4E-22 8.2E-27 223.5 24.4 259 361-636 34-361 (606)
20 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-22 4.2E-27 221.4 21.5 126 360-502 21-150 (520)
21 3oja_B Anopheles plasmodium-re 99.9 2.9E-22 9.8E-27 221.7 24.5 256 360-637 75-357 (597)
22 3v47_A TOLL-like receptor 5B a 99.9 1.4E-22 4.9E-27 217.0 21.3 281 360-658 30-407 (455)
23 1o6v_A Internalin A; bacterial 99.9 4.5E-22 1.6E-26 213.5 24.4 211 382-614 86-319 (466)
24 3v47_A TOLL-like receptor 5B a 99.9 1.9E-22 6.4E-27 216.2 21.2 258 386-658 30-383 (455)
25 3vq2_A TLR4, TOLL-like recepto 99.9 3.7E-22 1.2E-26 222.0 24.3 101 557-658 376-485 (606)
26 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-22 4.3E-27 223.0 20.3 130 360-504 26-162 (549)
27 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-21 4E-26 208.7 25.7 250 361-642 86-355 (457)
28 1xku_A Decorin; proteoglycan, 99.9 1.4E-21 4.7E-26 199.9 25.0 251 386-657 52-330 (330)
29 1o6v_A Internalin A; bacterial 99.9 7.7E-22 2.6E-26 211.7 24.0 268 361-658 47-343 (466)
30 4fcg_A Uncharacterized protein 99.9 1.7E-22 5.7E-27 205.9 17.2 208 424-655 82-310 (328)
31 1jl5_A Outer protein YOPM; leu 99.9 2.9E-22 1E-26 213.2 19.6 197 423-636 91-288 (454)
32 3t6q_A CD180 antigen; protein- 99.9 1.1E-21 3.8E-26 218.1 25.0 129 486-615 274-411 (606)
33 1jl5_A Outer protein YOPM; leu 99.9 4.1E-21 1.4E-25 204.3 27.5 218 424-658 132-369 (454)
34 3g06_A SSPH2 (leucine-rich rep 99.9 3E-21 1E-25 211.7 27.0 252 362-658 42-296 (622)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.4E-21 4.9E-26 214.9 24.7 126 360-502 52-181 (562)
36 1xku_A Decorin; proteoglycan, 99.9 2.9E-21 1E-25 197.4 25.1 254 384-658 29-305 (330)
37 1ogq_A PGIP-2, polygalacturona 99.9 8.6E-23 2.9E-27 206.8 13.2 245 386-642 50-308 (313)
38 2ft3_A Biglycan; proteoglycan, 99.9 1.5E-21 5.1E-26 199.7 21.8 250 386-657 54-331 (332)
39 3vq2_A TLR4, TOLL-like recepto 99.9 2.9E-21 9.8E-26 214.8 24.7 257 382-658 281-557 (606)
40 2ft3_A Biglycan; proteoglycan, 99.9 2.1E-21 7.3E-26 198.6 21.6 252 385-658 32-306 (332)
41 2id5_A Lingo-1, leucine rich r 99.9 4E-21 1.4E-25 207.0 24.1 256 386-658 32-308 (477)
42 2z7x_B TOLL-like receptor 1, v 99.9 6E-21 2E-25 208.1 24.3 100 359-478 44-148 (520)
43 3j0a_A TOLL-like receptor 5; m 99.9 4E-21 1.4E-25 221.1 23.4 280 360-657 24-373 (844)
44 3g06_A SSPH2 (leucine-rich rep 99.9 1.1E-20 3.9E-25 207.0 25.7 233 386-658 40-273 (622)
45 2z63_A TOLL-like receptor 4, v 99.9 5E-21 1.7E-25 211.2 22.8 265 377-658 67-482 (570)
46 1ogq_A PGIP-2, polygalacturona 99.9 7.7E-22 2.6E-26 199.8 13.8 245 360-619 50-306 (313)
47 1ziw_A TOLL-like receptor 3; i 99.9 1E-20 3.5E-25 213.3 24.5 280 360-656 25-363 (680)
48 2z81_A CD282 antigen, TOLL-lik 99.9 8.3E-21 2.9E-25 208.5 21.3 127 386-525 26-160 (549)
49 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.9E-20 6.6E-25 205.9 23.0 274 359-658 75-509 (562)
50 3zyi_A Leucine-rich repeat-con 99.9 4.2E-20 1.4E-24 197.4 23.8 230 387-636 55-301 (452)
51 2z66_A Variable lymphocyte rec 99.9 2E-20 6.8E-25 189.1 20.1 233 388-637 9-260 (306)
52 3zyi_A Leucine-rich repeat-con 99.9 4.3E-20 1.5E-24 197.3 23.2 215 386-615 75-301 (452)
53 3zyj_A Leucine-rich repeat-con 99.9 4E-20 1.4E-24 196.8 22.8 209 424-636 65-290 (440)
54 3zyj_A Leucine-rich repeat-con 99.8 5.6E-20 1.9E-24 195.7 23.1 228 424-658 44-291 (440)
55 2z66_A Variable lymphocyte rec 99.8 5.6E-20 1.9E-24 185.8 20.2 215 386-615 28-259 (306)
56 3j0a_A TOLL-like receptor 5; m 99.8 8.5E-20 2.9E-24 210.1 24.2 261 384-658 22-350 (844)
57 2z63_A TOLL-like receptor 4, v 99.8 3.8E-20 1.3E-24 204.2 19.9 236 361-615 29-336 (570)
58 2z80_A TOLL-like receptor 2, v 99.8 1.9E-20 6.6E-25 193.2 15.3 239 386-641 52-317 (353)
59 1ziw_A TOLL-like receptor 3; i 99.8 4.2E-19 1.4E-23 200.1 25.7 290 362-658 250-596 (680)
60 4g8a_A TOLL-like receptor 4; l 99.8 4.4E-19 1.5E-23 198.3 24.9 129 361-504 53-187 (635)
61 3o53_A Protein LRIM1, AGAP0063 99.8 2.2E-21 7.4E-26 197.0 3.2 234 360-618 34-276 (317)
62 1ozn_A Reticulon 4 receptor; N 99.8 2.1E-19 7.1E-24 179.5 17.4 232 423-657 32-285 (285)
63 2z80_A TOLL-like receptor 2, v 99.8 1.2E-20 3.9E-25 194.9 8.3 243 361-620 53-317 (353)
64 4g8a_A TOLL-like receptor 4; l 99.8 6E-18 2.1E-22 189.1 24.9 140 367-523 36-183 (635)
65 3o53_A Protein LRIM1, AGAP0063 99.8 2E-19 6.7E-24 182.5 11.3 241 378-640 26-277 (317)
66 1wwl_A Monocyte differentiatio 99.8 6.3E-20 2.2E-24 185.7 7.0 229 424-658 44-308 (312)
67 3oja_A Leucine-rich immune mol 99.8 2.9E-19 1E-23 191.9 11.5 228 361-612 35-270 (487)
68 4ay9_X Follicle-stimulating ho 99.8 3.2E-18 1.1E-22 176.1 18.2 221 430-654 16-254 (350)
69 1ozn_A Reticulon 4 receptor; N 99.8 1.6E-17 5.4E-22 165.8 22.1 208 425-638 13-238 (285)
70 3oja_A Leucine-rich immune mol 99.8 1.5E-18 5E-23 186.5 13.6 229 384-633 32-270 (487)
71 1p9a_G Platelet glycoprotein I 99.8 1.8E-17 6.1E-22 165.4 19.0 193 380-592 4-207 (290)
72 1h6u_A Internalin H; cell adhe 99.8 9.8E-18 3.3E-22 169.1 16.5 189 382-591 37-228 (308)
73 2xwt_C Thyrotropin receptor; s 99.8 9.1E-18 3.1E-22 162.9 15.6 187 446-635 32-236 (239)
74 1p9a_G Platelet glycoprotein I 99.7 3.3E-17 1.1E-21 163.4 18.4 192 418-615 6-206 (290)
75 2z62_A TOLL-like receptor 4, v 99.7 5.1E-17 1.7E-21 161.3 18.7 192 424-640 29-239 (276)
76 1h6u_A Internalin H; cell adhe 99.7 1.5E-17 5E-22 167.7 14.8 192 420-621 39-233 (308)
77 2z62_A TOLL-like receptor 4, v 99.7 2.9E-17 9.9E-22 163.1 16.1 206 367-591 12-235 (276)
78 1wwl_A Monocyte differentiatio 99.7 1.3E-17 4.6E-22 168.6 13.3 192 384-591 93-307 (312)
79 2o6q_A Variable lymphocyte rec 99.7 1.8E-16 6E-21 156.8 20.5 187 386-591 16-216 (270)
80 3rfs_A Internalin B, repeat mo 99.7 5.5E-17 1.9E-21 160.6 15.8 197 382-621 37-239 (272)
81 3cvr_A Invasion plasmid antige 99.7 1.1E-16 3.9E-21 173.1 18.5 188 387-604 60-254 (571)
82 2o6q_A Variable lymphocyte rec 99.7 4.1E-16 1.4E-20 154.1 21.0 188 424-615 17-216 (270)
83 2xwt_C Thyrotropin receptor; s 99.7 1E-16 3.6E-21 155.4 16.1 187 424-615 32-237 (239)
84 2ast_B S-phase kinase-associat 99.7 3.2E-18 1.1E-22 175.4 4.4 241 387-643 48-311 (336)
85 2qen_A Walker-type ATPase; unk 99.7 2.2E-16 7.5E-21 162.6 17.9 282 22-326 6-349 (350)
86 2fna_A Conserved hypothetical 99.7 1.7E-16 5.8E-21 163.9 16.1 282 22-325 7-356 (357)
87 2ast_B S-phase kinase-associat 99.7 5.2E-18 1.8E-22 173.7 3.8 232 424-658 48-305 (336)
88 3rfs_A Internalin B, repeat mo 99.7 1.6E-16 5.4E-21 157.3 13.4 194 360-578 41-244 (272)
89 4ay9_X Follicle-stimulating ho 99.7 7.7E-16 2.6E-20 158.2 18.1 225 389-634 12-255 (350)
90 1z7x_W Ribonuclease inhibitor; 99.7 6E-18 2.1E-22 181.3 1.8 285 361-658 29-382 (461)
91 3cvr_A Invasion plasmid antige 99.7 1E-15 3.4E-20 165.8 17.3 180 424-621 60-247 (571)
92 4glp_A Monocyte differentiatio 99.7 6.7E-16 2.3E-20 155.9 14.5 188 468-658 91-306 (310)
93 4glp_A Monocyte differentiatio 99.7 6.5E-16 2.2E-20 156.0 13.9 191 385-591 90-305 (310)
94 2ca6_A RAN GTPase-activating p 99.7 6.2E-17 2.1E-21 169.1 6.3 227 379-615 25-314 (386)
95 1z7x_W Ribonuclease inhibitor; 99.6 2.2E-17 7.4E-22 177.0 2.1 284 361-657 86-438 (461)
96 2ca6_A RAN GTPase-activating p 99.6 5E-17 1.7E-21 169.8 4.2 219 414-636 24-314 (386)
97 1h6t_A Internalin B; cell adhe 99.6 1.7E-15 5.7E-20 151.3 14.2 168 383-591 43-211 (291)
98 1h6t_A Internalin B; cell adhe 99.6 1.2E-15 4.2E-20 152.2 12.7 167 420-615 44-211 (291)
99 3m19_A Variable lymphocyte rec 99.6 7.3E-15 2.5E-19 143.4 17.7 163 426-592 17-191 (251)
100 3m19_A Variable lymphocyte rec 99.6 2.6E-14 8.9E-19 139.5 18.1 165 387-570 15-192 (251)
101 1m9s_A Internalin B; cell inva 99.6 2.6E-15 8.8E-20 164.4 11.5 168 419-615 40-208 (605)
102 3goz_A Leucine-rich repeat-con 99.6 1.1E-15 3.8E-20 157.9 8.1 232 390-637 2-296 (362)
103 1m9s_A Internalin B; cell inva 99.6 6.9E-15 2.3E-19 161.1 14.3 146 382-546 39-185 (605)
104 3ogk_B Coronatine-insensitive 99.6 2E-16 7E-21 175.1 1.0 265 383-658 161-500 (592)
105 1w5s_A Origin recognition comp 99.6 2.4E-14 8.2E-19 150.8 15.4 277 26-311 20-371 (412)
106 4ezg_A Putative uncharacterize 99.6 1.4E-14 4.8E-19 135.7 11.9 147 383-546 41-191 (197)
107 2o6s_A Variable lymphocyte rec 99.6 4.2E-14 1.4E-18 133.7 14.9 151 424-580 29-189 (208)
108 3ogk_B Coronatine-insensitive 99.5 1.3E-15 4.6E-20 168.6 4.4 257 381-657 215-524 (592)
109 3goz_A Leucine-rich repeat-con 99.5 1.3E-15 4.5E-20 157.3 4.0 226 379-615 15-295 (362)
110 4ezg_A Putative uncharacterize 99.5 5.3E-14 1.8E-18 131.7 14.0 148 486-658 40-193 (197)
111 1xeu_A Internalin C; cellular 99.5 1.2E-14 4.1E-19 142.7 8.3 147 418-592 37-184 (263)
112 1xeu_A Internalin C; cellular 99.5 7E-14 2.4E-18 137.2 11.6 147 381-547 36-183 (263)
113 2o6s_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 130.7 12.7 157 385-561 27-190 (208)
114 3e6j_A Variable lymphocyte rec 99.5 5.3E-13 1.8E-17 128.0 15.9 142 388-547 21-170 (229)
115 2v9t_B SLIT homolog 2 protein 99.5 7.1E-13 2.4E-17 126.2 14.9 141 389-547 14-163 (220)
116 2v9t_B SLIT homolog 2 protein 99.5 9.4E-13 3.2E-17 125.4 15.3 144 425-592 13-164 (220)
117 3e6j_A Variable lymphocyte rec 99.4 1.1E-12 3.6E-17 125.9 14.6 126 386-525 40-171 (229)
118 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 3.9E-17 124.8 14.8 144 426-593 14-166 (220)
119 2p1m_B Transport inhibitor res 99.4 9.1E-15 3.1E-19 161.9 0.1 100 556-658 396-518 (594)
120 2qby_B CDC6 homolog 3, cell di 99.4 6.9E-13 2.4E-17 138.2 13.8 273 28-311 20-339 (384)
121 2xot_A Amphoterin-induced prot 99.4 4.9E-13 1.7E-17 137.8 12.4 140 389-546 21-173 (361)
122 2v70_A SLIT-2, SLIT homolog 2 99.4 1.5E-12 5.2E-17 123.9 14.8 142 388-547 13-164 (220)
123 2xot_A Amphoterin-induced prot 99.4 9.9E-13 3.4E-17 135.6 14.3 164 425-592 20-201 (361)
124 2ell_A Acidic leucine-rich nuc 99.4 7.4E-13 2.5E-17 120.4 11.0 133 385-531 23-164 (168)
125 2p1m_B Transport inhibitor res 99.4 1.6E-14 5.4E-19 160.0 -0.3 264 382-658 152-493 (594)
126 1dce_A Protein (RAB geranylger 99.4 2.6E-15 8.8E-20 163.5 -8.2 38 492-531 443-480 (567)
127 1dce_A Protein (RAB geranylger 99.4 6.6E-15 2.3E-19 160.2 -5.1 169 443-614 347-543 (567)
128 4b8c_D Glucose-repressible alc 99.4 3E-13 1E-17 151.9 5.2 108 415-524 217-327 (727)
129 2je0_A Acidic leucine-rich nuc 99.3 1.2E-12 4.2E-17 116.3 7.9 124 385-521 16-148 (149)
130 2qby_A CDC6 homolog 1, cell di 99.3 4.4E-12 1.5E-16 132.2 13.2 273 26-311 18-348 (386)
131 2ell_A Acidic leucine-rich nuc 99.3 2.4E-12 8.3E-17 117.0 9.0 122 423-546 24-157 (168)
132 2v1u_A Cell division control p 99.3 8.9E-12 3.1E-16 129.9 14.3 275 27-311 18-351 (387)
133 1njg_A DNA polymerase III subu 99.3 4.5E-12 1.5E-16 123.0 10.9 197 23-225 18-229 (250)
134 2je0_A Acidic leucine-rich nuc 99.3 3.2E-12 1.1E-16 113.6 8.5 121 423-545 17-149 (149)
135 1a9n_A U2A', U2A'; complex (nu 99.3 2.7E-12 9.1E-17 117.7 8.2 127 382-523 15-150 (176)
136 4b8c_D Glucose-repressible alc 99.3 1.1E-12 3.9E-17 147.2 6.1 116 462-600 218-336 (727)
137 1a9n_A U2A', U2A'; complex (nu 99.3 3.3E-12 1.1E-16 117.0 7.3 125 418-546 15-150 (176)
138 2wfh_A SLIT homolog 2 protein 99.3 3.3E-11 1.1E-15 112.0 13.9 118 426-546 13-136 (193)
139 2wfh_A SLIT homolog 2 protein 99.3 1.8E-11 6.3E-16 113.7 12.0 119 389-524 13-137 (193)
140 1fnn_A CDC6P, cell division co 99.3 4.3E-11 1.5E-15 124.8 15.2 275 27-311 16-351 (389)
141 2chg_A Replication factor C sm 99.3 2.2E-11 7.6E-16 116.2 11.6 181 23-223 12-203 (226)
142 1w8a_A SLIT protein; signaling 99.3 2.8E-11 9.5E-16 112.5 11.8 99 424-523 30-136 (192)
143 1w8a_A SLIT protein; signaling 99.2 8E-11 2.7E-15 109.4 13.3 120 425-547 10-137 (192)
144 2o6r_A Variable lymphocyte rec 99.2 2.3E-10 7.9E-15 104.7 13.5 99 424-523 29-134 (177)
145 2o6r_A Variable lymphocyte rec 99.1 4.3E-10 1.5E-14 102.9 14.1 121 424-547 8-135 (177)
146 3sb4_A Hypothetical leucine ri 99.1 1E-10 3.6E-15 118.7 10.6 244 385-653 48-328 (329)
147 1ds9_A Outer arm dynein; leuci 99.1 1.6E-13 5.5E-18 128.5 -10.1 106 416-524 42-151 (198)
148 1ds9_A Outer arm dynein; leuci 99.1 4.4E-12 1.5E-16 118.7 -4.0 131 457-610 37-180 (198)
149 1sxj_B Activator 1 37 kDa subu 99.0 7.2E-10 2.5E-14 112.2 11.9 184 23-223 16-209 (323)
150 2r9u_A Variable lymphocyte rec 99.0 8.7E-10 3E-14 100.4 11.2 96 426-523 15-115 (174)
151 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.6E-14 99.5 11.1 97 425-523 11-112 (170)
152 4fdw_A Leucine rich hypothetic 99.0 2.1E-08 7.2E-13 104.1 20.0 210 377-614 127-355 (401)
153 2r9u_A Variable lymphocyte rec 99.0 2.8E-09 9.7E-14 96.9 11.5 103 388-507 14-122 (174)
154 1iqp_A RFCS; clamp loader, ext 99.0 1.6E-09 5.6E-14 109.8 10.5 181 23-223 20-211 (327)
155 3g39_A Variable lymphocyte rec 98.9 4.8E-09 1.6E-13 95.1 11.4 103 387-506 10-118 (170)
156 4fdw_A Leucine rich hypothetic 98.9 3.9E-08 1.3E-12 102.0 19.2 217 424-656 136-380 (401)
157 1jr3_A DNA polymerase III subu 98.9 1.5E-08 5.1E-13 104.7 15.4 196 23-224 11-221 (373)
158 2chq_A Replication factor C sm 98.9 1E-08 3.5E-13 103.5 13.3 180 23-222 12-202 (319)
159 1hqc_A RUVB; extended AAA-ATPa 98.9 2.1E-08 7.1E-13 101.4 15.4 263 23-324 7-311 (324)
160 1jbk_A CLPB protein; beta barr 98.9 3.2E-09 1.1E-13 98.4 8.4 151 25-188 19-194 (195)
161 3sb4_A Hypothetical leucine ri 98.9 1.5E-08 5.1E-13 102.7 13.7 185 421-611 100-328 (329)
162 3bos_A Putative DNA replicatio 98.8 2.6E-08 9E-13 95.9 11.8 174 25-223 25-216 (242)
163 1sxj_D Activator 1 41 kDa subu 98.8 6.1E-08 2.1E-12 99.3 13.6 195 23-223 32-234 (353)
164 1d2n_A N-ethylmaleimide-sensit 98.7 2.4E-07 8.3E-12 90.9 15.7 172 27-216 32-229 (272)
165 3pfi_A Holliday junction ATP-d 98.7 4.8E-07 1.6E-11 91.9 17.1 252 23-313 24-315 (338)
166 3pvs_A Replication-associated 98.7 1.9E-07 6.4E-12 97.8 13.9 179 23-221 21-212 (447)
167 3h4m_A Proteasome-activating n 98.6 1E-07 3.4E-12 94.4 10.2 179 23-216 12-222 (285)
168 3te6_A Regulatory protein SIR3 98.6 1.4E-07 4.8E-12 93.3 9.9 164 28-193 20-212 (318)
169 2ifg_A High affinity nerve gro 98.6 1.5E-07 5.1E-12 96.1 10.6 88 413-504 23-117 (347)
170 3uk6_A RUVB-like 2; hexameric 98.6 4.2E-07 1.4E-11 93.5 13.9 191 27-222 43-301 (368)
171 3u61_B DNA polymerase accessor 98.6 3.4E-07 1.2E-11 92.4 12.2 180 23-221 21-213 (324)
172 1sxj_A Activator 1 95 kDa subu 98.6 2.6E-07 9E-12 99.2 11.8 188 23-221 34-249 (516)
173 1sxj_E Activator 1 40 kDa subu 98.5 9.1E-08 3.1E-12 98.0 7.7 195 23-223 9-236 (354)
174 3d8b_A Fidgetin-like protein 1 98.5 9.4E-07 3.2E-11 90.2 15.2 187 23-223 79-294 (357)
175 3un9_A NLR family member X1; l 98.5 5.9E-09 2E-13 107.1 -2.3 35 489-523 154-193 (372)
176 3un9_A NLR family member X1; l 98.5 1.8E-08 6E-13 103.6 0.9 18 576-593 235-252 (372)
177 2p65_A Hypothetical protein PF 98.5 2E-07 7E-12 85.5 7.8 50 26-78 20-69 (187)
178 3eie_A Vacuolar protein sortin 98.5 9.7E-07 3.3E-11 88.8 13.0 180 23-216 13-219 (322)
179 2z4s_A Chromosomal replication 98.5 5E-07 1.7E-11 94.8 11.1 180 28-221 105-303 (440)
180 1a5t_A Delta prime, HOLB; zinc 98.5 3.2E-06 1.1E-10 85.4 16.4 170 34-225 8-206 (334)
181 3cf0_A Transitional endoplasmi 98.5 1.4E-06 4.7E-11 86.7 13.4 182 23-219 10-223 (301)
182 2qz4_A Paraplegin; AAA+, SPG7, 98.4 2E-06 7E-11 83.7 14.2 180 26-218 4-215 (262)
183 2ifg_A High affinity nerve gro 98.4 7.2E-07 2.4E-11 91.0 10.6 96 427-524 12-114 (347)
184 3syl_A Protein CBBX; photosynt 98.4 1.3E-06 4.3E-11 87.5 11.9 152 29-193 32-218 (309)
185 2ra8_A Uncharacterized protein 98.4 3.2E-07 1.1E-11 93.4 6.9 147 486-636 135-318 (362)
186 2zan_A Vacuolar protein sortin 98.4 4.5E-06 1.6E-10 87.7 15.4 181 23-217 129-337 (444)
187 2qp9_X Vacuolar protein sortin 98.4 2.5E-06 8.5E-11 86.9 13.0 187 23-223 46-260 (355)
188 3pxg_A Negative regulator of g 98.3 1.8E-06 6.2E-11 91.4 11.7 149 26-192 178-338 (468)
189 1sxj_C Activator 1 40 kDa subu 98.3 3.1E-06 1.1E-10 85.9 13.1 181 23-220 20-208 (340)
190 3b9p_A CG5977-PA, isoform A; A 98.3 6E-06 2E-10 82.0 14.9 199 9-222 3-231 (297)
191 1l8q_A Chromosomal replication 98.3 3.6E-06 1.2E-10 84.8 13.3 177 27-219 10-203 (324)
192 3vfd_A Spastin; ATPase, microt 98.3 3E-06 1E-10 87.7 12.4 182 23-218 110-319 (389)
193 3n70_A Transport activator; si 98.3 8.6E-07 2.9E-11 77.6 7.0 113 29-161 2-116 (145)
194 1xwi_A SKD1 protein; VPS4B, AA 98.3 1.9E-05 6.5E-10 79.2 16.8 181 23-217 7-215 (322)
195 4fcw_A Chaperone protein CLPB; 98.2 6.2E-06 2.1E-10 82.6 12.0 160 29-192 18-229 (311)
196 4b4t_J 26S protease regulatory 98.2 7.5E-06 2.6E-10 83.0 12.4 178 25-217 145-354 (405)
197 2ra8_A Uncharacterized protein 98.2 1.7E-06 5.9E-11 88.0 7.4 18 415-433 132-149 (362)
198 2r62_A Cell division protease 98.2 3.1E-06 1E-10 82.8 7.6 158 23-192 6-196 (268)
199 3hu3_A Transitional endoplasmi 98.1 5.4E-06 1.9E-10 87.6 9.3 174 27-216 203-406 (489)
200 1ofh_A ATP-dependent HSL prote 98.1 1.3E-05 4.6E-10 80.0 11.7 153 28-190 15-213 (310)
201 4b4t_L 26S protease subunit RP 98.1 1.1E-05 3.7E-10 83.2 10.7 179 24-217 177-387 (437)
202 1qvr_A CLPB protein; coiled co 98.1 9.6E-06 3.3E-10 92.7 11.0 153 26-191 168-344 (854)
203 4b4t_H 26S protease regulatory 98.1 2.5E-05 8.6E-10 80.2 12.8 178 25-217 206-415 (467)
204 4fs7_A Uncharacterized protein 98.1 0.00016 5.4E-09 74.9 19.2 249 376-655 61-375 (394)
205 3e4g_A ATP synthase subunit S, 98.1 3.3E-06 1.1E-10 75.4 5.2 84 445-528 61-154 (176)
206 1r6b_X CLPA protein; AAA+, N-t 98.1 4.2E-05 1.4E-09 86.5 15.5 154 27-192 185-362 (758)
207 3pxi_A Negative regulator of g 98.0 1.3E-05 4.4E-10 90.6 11.1 149 26-192 178-338 (758)
208 2bjv_A PSP operon transcriptio 98.0 1.4E-05 4.7E-10 77.9 8.8 49 28-77 6-54 (265)
209 2w58_A DNAI, primosome compone 98.0 9.3E-06 3.2E-10 75.5 7.2 126 26-161 23-159 (202)
210 4b4t_M 26S protease regulatory 98.0 1.2E-05 4E-10 82.9 8.1 176 23-217 176-387 (434)
211 4b4t_K 26S protease regulatory 98.0 3.5E-05 1.2E-09 79.3 11.6 174 25-217 169-379 (428)
212 1in4_A RUVB, holliday junction 98.0 9.4E-05 3.2E-09 74.6 14.6 256 23-315 20-315 (334)
213 1ojl_A Transcriptional regulat 98.0 1.9E-05 6.5E-10 78.4 9.2 48 28-76 2-49 (304)
214 1lv7_A FTSH; alpha/beta domain 97.9 7.4E-05 2.5E-09 72.3 13.0 183 23-220 7-221 (257)
215 3ec2_A DNA replication protein 97.9 1.2E-05 4.2E-10 73.2 6.9 119 33-161 19-143 (180)
216 4b4t_I 26S protease regulatory 97.9 2.3E-05 7.9E-10 79.7 9.5 178 25-217 179-388 (437)
217 2gno_A DNA polymerase III, gam 97.9 4.9E-05 1.7E-09 75.1 11.7 146 32-192 1-152 (305)
218 4fs7_A Uncharacterized protein 97.9 0.00031 1.1E-08 72.7 17.8 73 556-634 296-375 (394)
219 4gt6_A Cell surface protein; l 97.9 0.0016 5.5E-08 67.2 23.1 74 557-636 288-368 (394)
220 3pxi_A Negative regulator of g 97.9 3.5E-05 1.2E-09 87.0 11.0 151 28-192 491-675 (758)
221 2ce7_A Cell division protein F 97.9 4.5E-05 1.5E-09 79.9 10.6 177 26-217 14-221 (476)
222 3e4g_A ATP synthase subunit S, 97.9 1E-05 3.4E-10 72.2 4.9 82 558-640 62-154 (176)
223 4gt6_A Cell surface protein; l 97.9 0.00089 3E-08 69.2 20.2 92 557-656 265-367 (394)
224 3co5_A Putative two-component 97.8 5.2E-06 1.8E-10 72.4 2.1 110 27-160 3-115 (143)
225 2c9o_A RUVB-like 1; hexameric 97.7 0.00011 3.8E-09 77.4 10.2 96 125-223 297-409 (456)
226 3cf2_A TER ATPase, transitiona 97.6 8.1E-05 2.8E-09 82.6 8.3 176 28-218 204-408 (806)
227 2qgz_A Helicase loader, putati 97.6 4.9E-05 1.7E-09 75.4 5.3 60 28-87 124-188 (308)
228 1ixz_A ATP-dependent metallopr 97.5 0.0015 5.2E-08 62.8 15.0 179 23-217 11-221 (254)
229 2kjq_A DNAA-related protein; s 97.5 0.00022 7.4E-09 62.3 7.9 85 52-160 36-124 (149)
230 3m6a_A ATP-dependent protease 97.5 0.00049 1.7E-08 74.0 12.2 158 30-192 83-266 (543)
231 3t15_A Ribulose bisphosphate c 97.5 0.00047 1.6E-08 67.9 11.1 30 50-79 34-63 (293)
232 2dhr_A FTSH; AAA+ protein, hex 97.5 0.00071 2.4E-08 71.3 12.7 176 23-217 26-236 (499)
233 2r44_A Uncharacterized protein 97.5 0.00087 3E-08 67.4 12.5 152 27-194 26-200 (331)
234 1iy2_A ATP-dependent metallopr 97.4 0.0015 5.2E-08 63.7 13.9 180 23-217 35-245 (278)
235 1qvr_A CLPB protein; coiled co 97.4 0.00041 1.4E-08 79.2 10.9 128 29-160 559-710 (854)
236 1um8_A ATP-dependent CLP prote 97.4 0.0021 7.3E-08 65.8 14.8 50 29-78 22-98 (376)
237 1io0_A Tropomodulin; LRR prote 97.4 3.3E-05 1.1E-09 70.6 0.9 19 380-398 30-49 (185)
238 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00034 1.2E-08 79.0 9.3 158 28-192 458-666 (758)
239 1io0_A Tropomodulin; LRR prote 97.3 2.3E-05 7.9E-10 71.6 -0.7 99 424-523 37-161 (185)
240 4h09_A Hypothetical leucine ri 97.3 0.031 1.1E-06 57.1 22.3 213 376-613 59-319 (379)
241 1ypw_A Transitional endoplasmi 97.3 0.00052 1.8E-08 77.4 8.8 154 26-192 202-385 (806)
242 2x8a_A Nuclear valosin-contain 97.2 0.0057 1.9E-07 59.4 15.1 152 27-192 9-191 (274)
243 3rw6_A Nuclear RNA export fact 97.2 0.00026 8.8E-09 68.1 4.5 35 424-458 171-209 (267)
244 3rw6_A Nuclear RNA export fact 97.2 0.00028 9.6E-09 67.8 4.7 64 384-458 168-233 (267)
245 1g5t_A COB(I)alamin adenosyltr 97.0 0.0012 4.2E-08 59.6 7.4 110 52-162 28-164 (196)
246 3jvv_A Twitching mobility prot 97.0 0.0014 4.9E-08 65.9 8.5 112 51-165 122-235 (356)
247 1u0j_A DNA replication protein 96.9 0.0028 9.6E-08 60.4 9.2 25 52-76 104-128 (267)
248 2orw_A Thymidine kinase; TMTK, 96.7 0.001 3.5E-08 60.3 4.4 103 53-160 4-112 (184)
249 3cf2_A TER ATPase, transitiona 96.7 0.00078 2.7E-08 74.8 4.0 176 26-216 475-682 (806)
250 1jr3_D DNA polymerase III, del 96.7 0.017 5.8E-07 58.2 13.4 166 38-222 7-183 (343)
251 2eyu_A Twitching motility prot 96.5 0.0034 1.2E-07 60.3 6.8 111 50-163 23-135 (261)
252 1rz3_A Hypothetical protein rb 96.5 0.0031 1.1E-07 58.1 6.1 45 33-77 3-47 (201)
253 2cvh_A DNA repair and recombin 96.5 0.0038 1.3E-07 58.3 6.8 46 38-87 7-52 (220)
254 4h09_A Hypothetical leucine ri 96.5 0.14 4.9E-06 52.0 18.9 121 486-613 213-342 (379)
255 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0013 4.3E-08 64.4 2.8 71 52-135 123-194 (331)
256 2b8t_A Thymidine kinase; deoxy 96.3 0.0053 1.8E-07 57.1 6.4 104 51-160 11-125 (223)
257 3hws_A ATP-dependent CLP prote 96.3 0.0039 1.3E-07 63.5 5.9 49 29-77 16-76 (363)
258 2ewv_A Twitching motility prot 96.2 0.0082 2.8E-07 61.0 7.8 110 50-162 134-245 (372)
259 3nbx_X ATPase RAVA; AAA+ ATPas 96.2 0.0047 1.6E-07 65.1 6.2 45 28-77 22-66 (500)
260 2r8r_A Sensor protein; KDPD, P 96.2 0.018 6.1E-07 53.3 9.2 105 53-161 7-127 (228)
261 3hr8_A Protein RECA; alpha and 96.2 0.021 7.2E-07 57.2 10.2 53 34-87 43-96 (356)
262 4a74_A DNA repair and recombin 96.2 0.0057 2E-07 57.6 5.8 26 51-76 24-49 (231)
263 1qhx_A CPT, protein (chloramph 96.1 0.0031 1.1E-07 56.7 3.5 25 53-77 4-28 (178)
264 3bh0_A DNAB-like replicative h 96.0 0.012 4.2E-07 58.3 7.6 74 6-87 30-103 (315)
265 1ex7_A Guanylate kinase; subst 96.0 0.0025 8.5E-08 57.6 2.3 28 53-80 2-29 (186)
266 1u94_A RECA protein, recombina 96.0 0.022 7.6E-07 57.2 9.5 53 34-87 45-98 (356)
267 3c8u_A Fructokinase; YP_612366 95.9 0.0059 2E-07 56.5 4.5 40 37-77 8-47 (208)
268 2zr9_A Protein RECA, recombina 95.8 0.03 1E-06 56.2 9.6 52 35-87 44-96 (349)
269 3dzd_A Transcriptional regulat 95.8 0.15 5E-06 51.6 14.8 50 27-77 128-177 (368)
270 3io5_A Recombination and repai 95.7 0.022 7.5E-07 55.4 7.7 34 54-87 30-65 (333)
271 2pt7_A CAG-ALFA; ATPase, prote 95.7 0.011 3.6E-07 59.1 5.7 101 53-162 172-276 (330)
272 3kb2_A SPBC2 prophage-derived 95.6 0.0069 2.4E-07 54.0 3.7 25 53-77 2-26 (173)
273 3e70_C DPA, signal recognition 95.6 0.024 8.3E-07 56.2 7.8 30 50-79 127-156 (328)
274 1odf_A YGR205W, hypothetical 3 95.6 0.011 3.9E-07 57.6 5.3 29 50-78 29-57 (290)
275 4a1f_A DNAB helicase, replicat 95.6 0.011 3.7E-07 58.8 5.1 78 6-87 4-81 (338)
276 2xxa_A Signal recognition part 95.6 0.042 1.5E-06 56.8 9.7 51 37-87 79-136 (433)
277 1g8p_A Magnesium-chelatase 38 95.5 0.0048 1.6E-07 62.4 2.5 52 23-77 19-70 (350)
278 3vaa_A Shikimate kinase, SK; s 95.5 0.0076 2.6E-07 55.4 3.7 27 51-77 24-50 (199)
279 3trf_A Shikimate kinase, SK; a 95.5 0.0078 2.7E-07 54.5 3.6 26 52-77 5-30 (185)
280 3uie_A Adenylyl-sulfate kinase 95.5 0.014 4.6E-07 53.7 5.2 28 50-77 23-50 (200)
281 1ly1_A Polynucleotide kinase; 95.5 0.0085 2.9E-07 53.9 3.7 22 53-74 3-24 (181)
282 3fwy_A Light-independent proto 95.5 0.012 4.1E-07 58.1 5.1 38 50-87 46-83 (314)
283 1xp8_A RECA protein, recombina 95.5 0.048 1.6E-06 55.0 9.6 53 34-87 56-109 (366)
284 1v5w_A DMC1, meiotic recombina 95.5 0.022 7.5E-07 57.2 7.1 49 38-87 109-163 (343)
285 3ice_A Transcription terminati 95.5 0.012 4.1E-07 58.8 4.9 28 51-78 173-200 (422)
286 1tue_A Replication protein E1; 95.4 0.01 3.5E-07 53.8 4.1 40 37-78 45-84 (212)
287 1ny5_A Transcriptional regulat 95.4 0.32 1.1E-05 49.6 15.7 48 28-76 137-184 (387)
288 1nks_A Adenylate kinase; therm 95.4 0.013 4.6E-07 53.2 4.9 26 53-78 2-27 (194)
289 1j8m_F SRP54, signal recogniti 95.4 0.027 9.1E-07 55.2 7.2 36 52-87 98-133 (297)
290 3upu_A ATP-dependent DNA helic 95.3 0.037 1.3E-06 58.1 8.6 29 53-81 46-74 (459)
291 2r2a_A Uncharacterized protein 95.3 0.049 1.7E-06 49.7 8.2 108 54-161 7-133 (199)
292 1xjc_A MOBB protein homolog; s 95.3 0.015 5.1E-07 51.4 4.5 29 51-79 3-31 (169)
293 2rhm_A Putative kinase; P-loop 95.3 0.011 3.9E-07 53.7 3.9 26 51-76 4-29 (193)
294 3tlx_A Adenylate kinase 2; str 95.3 0.014 4.9E-07 55.4 4.7 40 36-76 14-53 (243)
295 3lw7_A Adenylate kinase relate 95.3 0.01 3.5E-07 53.0 3.5 22 53-75 2-23 (179)
296 2z43_A DNA repair and recombin 95.2 0.016 5.4E-07 57.8 5.1 49 38-87 94-148 (324)
297 1kgd_A CASK, peripheral plasma 95.2 0.0099 3.4E-07 53.6 3.3 26 52-77 5-30 (180)
298 1zuh_A Shikimate kinase; alpha 95.2 0.011 3.8E-07 52.5 3.6 27 51-77 6-32 (168)
299 4dkx_A RAS-related protein RAB 95.2 0.016 5.5E-07 53.9 4.8 22 54-75 15-36 (216)
300 1zu4_A FTSY; GTPase, signal re 95.2 0.031 1.1E-06 55.3 7.0 37 50-86 103-139 (320)
301 3tqc_A Pantothenate kinase; bi 95.2 0.027 9.2E-07 55.5 6.5 48 30-77 69-117 (321)
302 3rfe_A Platelet glycoprotein I 95.2 0.033 1.1E-06 46.9 6.1 52 427-479 12-66 (130)
303 3e1s_A Exodeoxyribonuclease V, 95.2 0.038 1.3E-06 59.6 8.1 33 52-84 204-236 (574)
304 3iij_A Coilin-interacting nucl 95.2 0.0094 3.2E-07 53.6 2.9 25 52-76 11-35 (180)
305 1zp6_A Hypothetical protein AT 95.1 0.011 3.8E-07 53.7 3.3 25 51-75 8-32 (191)
306 2yvu_A Probable adenylyl-sulfa 95.1 0.021 7.3E-07 51.6 5.2 28 51-78 12-39 (186)
307 3ney_A 55 kDa erythrocyte memb 95.1 0.013 4.6E-07 53.2 3.6 27 51-77 18-44 (197)
308 2plr_A DTMP kinase, probable t 95.1 0.023 8E-07 52.5 5.4 29 52-80 4-32 (213)
309 2hf9_A Probable hydrogenase ni 95.0 0.017 6E-07 54.0 4.5 40 36-78 25-64 (226)
310 1kag_A SKI, shikimate kinase I 95.0 0.011 3.9E-07 52.7 3.1 25 53-77 5-29 (173)
311 1g41_A Heat shock protein HSLU 95.0 0.018 6.1E-07 59.4 4.8 52 28-79 15-77 (444)
312 1kht_A Adenylate kinase; phosp 95.0 0.014 4.8E-07 53.0 3.6 26 53-78 4-29 (192)
313 3t61_A Gluconokinase; PSI-biol 95.0 0.012 4E-07 54.2 3.1 25 52-76 18-42 (202)
314 1gvn_B Zeta; postsegregational 95.0 0.022 7.6E-07 55.5 5.2 27 50-76 31-57 (287)
315 3tau_A Guanylate kinase, GMP k 95.0 0.014 4.7E-07 54.0 3.6 27 51-77 7-33 (208)
316 1y63_A LMAJ004144AAA protein; 95.0 0.015 5E-07 52.6 3.7 25 51-75 9-33 (184)
317 2qor_A Guanylate kinase; phosp 95.0 0.011 3.9E-07 54.4 3.0 27 51-77 11-37 (204)
318 3a00_A Guanylate kinase, GMP k 95.0 0.012 4E-07 53.4 3.0 28 53-80 2-29 (186)
319 2ze6_A Isopentenyl transferase 95.0 0.015 5.1E-07 55.6 3.9 25 53-77 2-26 (253)
320 1nn5_A Similar to deoxythymidy 94.9 0.019 6.6E-07 53.2 4.4 28 52-79 9-36 (215)
321 1ukz_A Uridylate kinase; trans 94.9 0.018 6.2E-07 52.9 4.1 27 50-76 13-39 (203)
322 4eun_A Thermoresistant glucoki 94.9 0.016 5.3E-07 53.3 3.5 26 51-76 28-53 (200)
323 3bgw_A DNAB-like replicative h 94.9 0.039 1.3E-06 57.4 7.0 54 32-87 179-232 (444)
324 1tev_A UMP-CMP kinase; ploop, 94.9 0.017 5.9E-07 52.5 3.9 25 52-76 3-27 (196)
325 3dm5_A SRP54, signal recogniti 94.8 0.077 2.6E-06 54.6 8.9 37 51-87 99-135 (443)
326 1knq_A Gluconate kinase; ALFA/ 94.8 0.019 6.4E-07 51.3 3.9 26 51-76 7-32 (175)
327 3b9q_A Chloroplast SRP recepto 94.8 0.066 2.3E-06 52.5 8.1 29 51-79 99-127 (302)
328 3umf_A Adenylate kinase; rossm 94.8 0.02 6.9E-07 53.0 4.1 27 50-76 27-53 (217)
329 2jaq_A Deoxyguanosine kinase; 94.8 0.017 5.7E-07 53.1 3.5 24 54-77 2-25 (205)
330 3a4m_A L-seryl-tRNA(SEC) kinas 94.8 0.019 6.4E-07 55.2 4.0 26 52-77 4-29 (260)
331 2vli_A Antibiotic resistance p 94.8 0.012 4.2E-07 53.0 2.5 26 52-77 5-30 (183)
332 2wsm_A Hydrogenase expression/ 94.8 0.025 8.5E-07 52.7 4.7 42 35-79 16-57 (221)
333 2c95_A Adenylate kinase 1; tra 94.7 0.017 5.7E-07 52.7 3.4 26 51-76 8-33 (196)
334 3cm0_A Adenylate kinase; ATP-b 94.7 0.022 7.6E-07 51.4 4.1 25 52-76 4-28 (186)
335 1uj2_A Uridine-cytidine kinase 94.7 0.02 6.8E-07 54.7 4.0 28 50-77 20-47 (252)
336 2dr3_A UPF0273 protein PH0284; 94.6 0.021 7.2E-07 54.2 4.0 36 52-87 23-58 (247)
337 2r6a_A DNAB helicase, replicat 94.6 0.061 2.1E-06 56.3 7.8 50 36-87 189-239 (454)
338 1uf9_A TT1252 protein; P-loop, 94.6 0.021 7.2E-07 52.4 3.7 26 50-75 6-31 (203)
339 2q6t_A DNAB replication FORK h 94.6 0.056 1.9E-06 56.4 7.4 51 35-87 185-236 (444)
340 3tr0_A Guanylate kinase, GMP k 94.6 0.02 6.9E-07 52.6 3.6 25 52-76 7-31 (205)
341 3p32_A Probable GTPase RV1496/ 94.6 0.052 1.8E-06 54.8 6.9 42 37-79 65-106 (355)
342 1sky_E F1-ATPase, F1-ATP synth 94.6 0.064 2.2E-06 55.4 7.5 26 54-79 153-178 (473)
343 2iyv_A Shikimate kinase, SK; t 94.6 0.015 5.2E-07 52.5 2.6 24 54-77 4-27 (184)
344 1via_A Shikimate kinase; struc 94.6 0.019 6.6E-07 51.3 3.3 24 54-77 6-29 (175)
345 2bdt_A BH3686; alpha-beta prot 94.6 0.022 7.5E-07 51.6 3.7 23 53-75 3-25 (189)
346 2ga8_A Hypothetical 39.9 kDa p 94.5 0.026 8.9E-07 56.0 4.4 47 34-80 5-52 (359)
347 1e6c_A Shikimate kinase; phosp 94.5 0.017 5.8E-07 51.5 2.9 25 53-77 3-27 (173)
348 2i1q_A DNA repair and recombin 94.5 0.035 1.2E-06 55.3 5.4 39 37-76 84-122 (322)
349 2cdn_A Adenylate kinase; phosp 94.5 0.024 8.2E-07 52.0 3.9 27 51-77 19-45 (201)
350 2bwj_A Adenylate kinase 5; pho 94.5 0.019 6.5E-07 52.5 3.1 26 52-77 12-37 (199)
351 1qf9_A UMP/CMP kinase, protein 94.5 0.023 7.7E-07 51.6 3.6 25 52-76 6-30 (194)
352 2j41_A Guanylate kinase; GMP, 94.5 0.022 7.7E-07 52.4 3.6 25 52-76 6-30 (207)
353 3end_A Light-independent proto 94.4 0.034 1.2E-06 54.9 5.1 38 50-87 39-76 (307)
354 2pt5_A Shikimate kinase, SK; a 94.4 0.024 8.3E-07 50.1 3.6 24 54-77 2-25 (168)
355 3kl4_A SRP54, signal recogniti 94.4 0.077 2.6E-06 54.6 7.7 37 51-87 96-132 (433)
356 3asz_A Uridine kinase; cytidin 94.4 0.024 8.2E-07 52.4 3.6 28 50-77 4-31 (211)
357 3rfe_A Platelet glycoprotein I 94.4 0.062 2.1E-06 45.2 5.8 55 390-458 12-68 (130)
358 2qt1_A Nicotinamide riboside k 94.4 0.023 8E-07 52.4 3.5 27 50-76 19-45 (207)
359 2wwf_A Thymidilate kinase, put 94.3 0.032 1.1E-06 51.6 4.4 27 52-78 10-36 (212)
360 3l0o_A Transcription terminati 94.3 0.029 9.8E-07 56.0 4.0 26 52-77 175-200 (427)
361 4akg_A Glutathione S-transfera 94.3 0.042 1.4E-06 69.1 6.4 137 53-192 1268-1431(2695)
362 1lvg_A Guanylate kinase, GMP k 94.2 0.02 7E-07 52.4 2.7 26 52-77 4-29 (198)
363 2pbr_A DTMP kinase, thymidylat 94.2 0.028 9.5E-07 51.1 3.7 24 54-77 2-25 (195)
364 1zd8_A GTP:AMP phosphotransfer 94.2 0.023 8E-07 53.3 3.2 26 51-76 6-31 (227)
365 3k1j_A LON protease, ATP-depen 94.2 0.02 6.9E-07 62.4 3.1 52 23-79 36-87 (604)
366 1cke_A CK, MSSA, protein (cyti 94.2 0.028 9.4E-07 52.7 3.6 24 53-76 6-29 (227)
367 2grj_A Dephospho-COA kinase; T 94.2 0.035 1.2E-06 50.4 4.2 26 50-75 10-35 (192)
368 1ye8_A Protein THEP1, hypothet 94.2 0.028 9.7E-07 50.3 3.5 24 54-77 2-25 (178)
369 2if2_A Dephospho-COA kinase; a 94.2 0.025 8.7E-07 51.9 3.3 21 54-74 3-23 (204)
370 1n0w_A DNA repair protein RAD5 94.2 0.041 1.4E-06 52.0 4.8 50 37-87 10-65 (243)
371 2z0h_A DTMP kinase, thymidylat 94.1 0.029 1E-06 51.1 3.6 25 54-78 2-26 (197)
372 1aky_A Adenylate kinase; ATP:A 94.1 0.028 9.5E-07 52.4 3.5 26 52-77 4-29 (220)
373 2p5t_B PEZT; postsegregational 94.1 0.035 1.2E-06 53.1 4.3 28 50-77 30-57 (253)
374 1vma_A Cell division protein F 94.1 0.047 1.6E-06 53.6 5.2 37 50-86 102-138 (306)
375 3fb4_A Adenylate kinase; psych 94.1 0.03 1E-06 52.0 3.6 23 54-76 2-24 (216)
376 1xx6_A Thymidine kinase; NESG, 94.1 0.067 2.3E-06 48.4 5.8 105 51-161 7-118 (191)
377 1rj9_A FTSY, signal recognitio 94.1 0.044 1.5E-06 53.8 4.9 36 51-87 101-136 (304)
378 2w0m_A SSO2452; RECA, SSPF, un 94.1 0.038 1.3E-06 51.8 4.4 36 52-87 23-58 (235)
379 2v54_A DTMP kinase, thymidylat 94.1 0.03 1E-06 51.4 3.5 25 52-76 4-28 (204)
380 1zak_A Adenylate kinase; ATP:A 94.0 0.024 8E-07 53.0 2.8 27 51-77 4-30 (222)
381 3dl0_A Adenylate kinase; phosp 94.0 0.032 1.1E-06 51.8 3.6 23 54-76 2-24 (216)
382 2bbw_A Adenylate kinase 4, AK4 94.0 0.03 1E-06 53.2 3.5 26 51-76 26-51 (246)
383 1jjv_A Dephospho-COA kinase; P 94.0 0.03 1E-06 51.5 3.4 22 53-74 3-24 (206)
384 2v3c_C SRP54, signal recogniti 94.0 0.042 1.4E-06 56.7 4.8 37 51-87 98-134 (432)
385 3lda_A DNA repair protein RAD5 94.0 0.05 1.7E-06 55.6 5.2 50 37-87 164-219 (400)
386 1yrb_A ATP(GTP)binding protein 94.0 0.063 2.1E-06 51.5 5.8 37 50-87 12-48 (262)
387 3a8t_A Adenylate isopentenyltr 94.0 0.029 1E-06 55.3 3.3 26 51-76 39-64 (339)
388 3exa_A TRNA delta(2)-isopenten 93.9 0.035 1.2E-06 54.0 3.8 25 52-76 3-27 (322)
389 4gp7_A Metallophosphoesterase; 93.9 0.03 1E-06 49.8 3.2 22 51-72 8-29 (171)
390 1np6_A Molybdopterin-guanine d 93.9 0.05 1.7E-06 48.4 4.5 27 52-78 6-32 (174)
391 2pez_A Bifunctional 3'-phospho 93.9 0.041 1.4E-06 49.3 4.0 27 51-77 4-30 (179)
392 1s96_A Guanylate kinase, GMP k 93.8 0.035 1.2E-06 51.7 3.4 27 51-77 15-41 (219)
393 3d3q_A TRNA delta(2)-isopenten 93.8 0.038 1.3E-06 54.7 3.9 25 53-77 8-32 (340)
394 2qmh_A HPR kinase/phosphorylas 93.8 0.033 1.1E-06 50.2 3.1 25 52-76 34-58 (205)
395 2jeo_A Uridine-cytidine kinase 93.8 0.04 1.4E-06 52.3 4.0 27 50-76 23-49 (245)
396 1htw_A HI0065; nucleotide-bind 93.8 0.046 1.6E-06 47.8 4.0 26 51-76 32-57 (158)
397 1m7g_A Adenylylsulfate kinase; 93.8 0.044 1.5E-06 50.7 4.1 28 50-77 23-50 (211)
398 3aez_A Pantothenate kinase; tr 93.8 0.041 1.4E-06 54.3 4.0 28 50-77 88-115 (312)
399 1vht_A Dephospho-COA kinase; s 93.7 0.043 1.5E-06 51.0 4.0 23 52-74 4-26 (218)
400 3foz_A TRNA delta(2)-isopenten 93.7 0.048 1.6E-06 53.0 4.3 26 51-76 9-34 (316)
401 1z6g_A Guanylate kinase; struc 93.7 0.031 1.1E-06 52.0 2.9 25 52-76 23-47 (218)
402 2px0_A Flagellar biosynthesis 93.7 0.055 1.9E-06 52.9 4.7 37 51-87 104-141 (296)
403 3crm_A TRNA delta(2)-isopenten 93.6 0.044 1.5E-06 53.9 3.9 26 52-77 5-30 (323)
404 2f6r_A COA synthase, bifunctio 93.6 0.042 1.4E-06 53.4 3.7 25 50-74 73-97 (281)
405 1cp2_A CP2, nitrogenase iron p 93.5 0.065 2.2E-06 51.6 5.0 35 53-87 2-36 (269)
406 1znw_A Guanylate kinase, GMP k 93.5 0.041 1.4E-06 50.7 3.4 27 51-77 19-45 (207)
407 3hjn_A DTMP kinase, thymidylat 93.5 0.2 6.9E-06 45.5 8.0 33 54-86 2-34 (197)
408 2ehv_A Hypothetical protein PH 93.5 0.055 1.9E-06 51.4 4.4 37 51-87 29-66 (251)
409 2ck3_D ATP synthase subunit be 93.5 0.18 6.2E-06 51.9 8.3 39 52-91 153-192 (482)
410 1gtv_A TMK, thymidylate kinase 93.5 0.022 7.7E-07 52.7 1.5 25 54-78 2-26 (214)
411 4e22_A Cytidylate kinase; P-lo 93.4 0.045 1.5E-06 52.2 3.6 25 52-76 27-51 (252)
412 3iqw_A Tail-anchored protein t 93.4 0.085 2.9E-06 52.5 5.7 38 50-87 14-51 (334)
413 3io3_A DEHA2D07832P; chaperone 93.4 0.079 2.7E-06 53.0 5.4 38 50-87 16-55 (348)
414 1g8f_A Sulfate adenylyltransfe 93.4 0.087 3E-06 55.4 5.9 49 29-78 373-421 (511)
415 3ake_A Cytidylate kinase; CMP 93.3 0.051 1.7E-06 50.0 3.6 23 54-76 4-26 (208)
416 1ak2_A Adenylate kinase isoenz 93.3 0.051 1.7E-06 51.1 3.7 27 51-77 15-41 (233)
417 2xb4_A Adenylate kinase; ATP-b 93.3 0.051 1.7E-06 50.7 3.6 23 54-76 2-24 (223)
418 2ged_A SR-beta, signal recogni 93.3 0.046 1.6E-06 49.5 3.2 25 51-75 47-71 (193)
419 3nwj_A ATSK2; P loop, shikimat 93.2 0.039 1.3E-06 52.4 2.8 25 53-77 49-73 (250)
420 2afh_E Nitrogenase iron protei 93.2 0.073 2.5E-06 51.9 4.8 36 52-87 2-37 (289)
421 3sr0_A Adenylate kinase; phosp 93.2 0.056 1.9E-06 49.7 3.7 23 54-76 2-24 (206)
422 1a7j_A Phosphoribulokinase; tr 93.2 0.03 1E-06 54.7 1.9 27 51-77 4-30 (290)
423 3r20_A Cytidylate kinase; stru 93.1 0.055 1.9E-06 50.6 3.6 25 52-76 9-33 (233)
424 3be4_A Adenylate kinase; malar 93.1 0.051 1.8E-06 50.5 3.4 25 52-76 5-29 (217)
425 1e4v_A Adenylate kinase; trans 93.1 0.052 1.8E-06 50.3 3.4 23 54-76 2-24 (214)
426 2j9r_A Thymidine kinase; TK1, 93.0 0.18 6.3E-06 46.1 6.8 104 51-160 27-137 (214)
427 2og2_A Putative signal recogni 93.0 0.085 2.9E-06 52.9 5.0 29 51-79 156-184 (359)
428 1ltq_A Polynucleotide kinase; 93.0 0.06 2.1E-06 52.9 3.9 23 53-75 3-25 (301)
429 2f1r_A Molybdopterin-guanine d 92.9 0.033 1.1E-06 49.4 1.7 26 53-78 3-28 (171)
430 1ls1_A Signal recognition part 92.8 0.097 3.3E-06 51.1 5.0 37 51-87 97-133 (295)
431 1sq5_A Pantothenate kinase; P- 92.8 0.065 2.2E-06 52.8 3.8 28 50-77 78-105 (308)
432 1cr0_A DNA primase/helicase; R 92.8 0.084 2.9E-06 51.7 4.5 37 51-87 34-71 (296)
433 3cmu_A Protein RECA, recombina 92.7 0.16 5.5E-06 61.8 7.6 49 38-87 1413-1462(2050)
434 4eaq_A DTMP kinase, thymidylat 92.7 0.13 4.3E-06 48.2 5.5 28 51-78 25-52 (229)
435 2i3b_A HCR-ntpase, human cance 92.6 0.059 2E-06 48.7 2.9 24 54-77 3-26 (189)
436 2zts_A Putative uncharacterize 92.6 0.088 3E-06 49.9 4.4 37 51-87 29-66 (251)
437 3lnc_A Guanylate kinase, GMP k 92.6 0.043 1.5E-06 51.6 2.1 25 52-76 27-52 (231)
438 3v9p_A DTMP kinase, thymidylat 92.5 0.2 6.8E-06 46.7 6.5 29 51-79 24-52 (227)
439 3zvl_A Bifunctional polynucleo 92.5 0.058 2E-06 55.7 3.1 27 50-76 256-282 (416)
440 4gzl_A RAS-related C3 botulinu 92.5 0.069 2.3E-06 49.0 3.3 45 28-75 9-53 (204)
441 1fx0_B ATP synthase beta chain 92.5 0.26 9E-06 50.9 7.8 39 52-91 165-204 (498)
442 3ug7_A Arsenical pump-driving 92.5 0.16 5.6E-06 50.9 6.3 38 50-87 24-61 (349)
443 2yhs_A FTSY, cell division pro 92.5 0.11 3.6E-06 54.2 4.9 35 51-86 292-326 (503)
444 1svm_A Large T antigen; AAA+ f 92.4 0.1 3.4E-06 52.8 4.6 27 50-76 167-193 (377)
445 3cmw_A Protein RECA, recombina 92.4 0.14 4.7E-06 61.5 6.4 80 51-135 731-822 (1706)
446 2wji_A Ferrous iron transport 92.4 0.089 3E-06 46.2 3.9 23 53-75 4-26 (165)
447 3eph_A TRNA isopentenyltransfe 92.4 0.076 2.6E-06 53.7 3.7 26 52-77 2-27 (409)
448 2ocp_A DGK, deoxyguanosine kin 92.4 0.082 2.8E-06 50.0 3.7 26 52-77 2-27 (241)
449 3tqf_A HPR(Ser) kinase; transf 92.4 0.085 2.9E-06 46.2 3.4 24 52-75 16-39 (181)
450 1nlf_A Regulatory protein REPA 92.3 0.11 3.9E-06 50.2 4.9 26 52-77 30-55 (279)
451 4hlc_A DTMP kinase, thymidylat 92.3 0.14 4.7E-06 47.0 5.0 29 53-81 3-31 (205)
452 2onk_A Molybdate/tungstate ABC 92.2 0.076 2.6E-06 50.1 3.3 26 50-76 23-48 (240)
453 4edh_A DTMP kinase, thymidylat 92.2 0.16 5.5E-06 46.8 5.4 28 52-79 6-33 (213)
454 3cmu_A Protein RECA, recombina 92.2 0.45 1.5E-05 58.0 10.4 57 30-87 361-418 (2050)
455 2dyk_A GTP-binding protein; GT 92.2 0.09 3.1E-06 45.7 3.5 23 53-75 2-24 (161)
456 2j37_W Signal recognition part 92.1 0.13 4.4E-06 54.1 5.2 37 51-87 100-136 (504)
457 3t1o_A Gliding protein MGLA; G 92.1 0.24 8.1E-06 44.7 6.5 26 52-77 14-39 (198)
458 1oix_A RAS-related protein RAB 92.1 0.083 2.8E-06 47.8 3.3 24 52-75 29-52 (191)
459 2zej_A Dardarin, leucine-rich 92.1 0.066 2.3E-06 48.1 2.6 22 54-75 4-25 (184)
460 4dzz_A Plasmid partitioning pr 92.0 0.13 4.4E-06 47.0 4.6 35 53-87 2-37 (206)
461 3kjh_A CO dehydrogenase/acetyl 92.0 0.11 3.7E-06 49.3 4.2 33 55-87 3-35 (254)
462 3zq6_A Putative arsenical pump 92.0 0.11 3.8E-06 51.5 4.3 36 52-87 14-49 (324)
463 2f9l_A RAB11B, member RAS onco 92.0 0.087 3E-06 48.0 3.3 24 52-75 5-28 (199)
464 1w36_D RECD, exodeoxyribonucle 91.9 0.27 9.2E-06 53.4 7.6 26 52-77 164-189 (608)
465 3tif_A Uncharacterized ABC tra 91.9 0.077 2.6E-06 49.9 2.8 26 51-76 30-55 (235)
466 1pzn_A RAD51, DNA repair and r 91.8 0.16 5.5E-06 50.9 5.3 38 38-76 118-155 (349)
467 3b85_A Phosphate starvation-in 91.8 0.077 2.6E-06 48.8 2.7 23 53-75 23-45 (208)
468 2p67_A LAO/AO transport system 91.8 0.22 7.7E-06 49.7 6.3 29 50-78 54-82 (341)
469 2ffh_A Protein (FFH); SRP54, s 91.7 0.17 5.8E-06 51.9 5.4 37 51-87 97-133 (425)
470 2wjg_A FEOB, ferrous iron tran 91.6 0.12 3.9E-06 46.5 3.7 24 52-75 7-30 (188)
471 2pcj_A ABC transporter, lipopr 91.6 0.079 2.7E-06 49.4 2.6 25 52-76 30-54 (224)
472 2gza_A Type IV secretion syste 91.6 0.16 5.4E-06 51.2 5.0 89 52-141 175-270 (361)
473 1ypw_A Transitional endoplasmi 91.6 0.091 3.1E-06 59.2 3.5 154 26-192 475-661 (806)
474 1q3t_A Cytidylate kinase; nucl 91.6 0.11 3.9E-06 48.8 3.7 27 50-76 14-40 (236)
475 2ce2_X GTPase HRAS; signaling 91.5 0.092 3.1E-06 45.8 2.9 22 54-75 5-26 (166)
476 3cr8_A Sulfate adenylyltranfer 91.5 0.17 5.7E-06 54.0 5.2 28 51-78 368-395 (552)
477 3f9v_A Minichromosome maintena 91.5 0.045 1.5E-06 59.3 0.8 50 27-76 294-351 (595)
478 2qm8_A GTPase/ATPase; G protei 91.4 0.29 9.8E-06 48.8 6.6 28 50-77 53-80 (337)
479 2orv_A Thymidine kinase; TP4A 91.4 0.43 1.5E-05 44.1 7.1 102 52-160 19-125 (234)
480 2axn_A 6-phosphofructo-2-kinas 91.4 0.17 6E-06 53.6 5.2 31 50-80 33-63 (520)
481 2cbz_A Multidrug resistance-as 91.3 0.094 3.2E-06 49.4 2.8 26 51-76 30-55 (237)
482 1z2a_A RAS-related protein RAB 91.3 0.11 3.9E-06 45.4 3.3 24 52-75 5-28 (168)
483 2v9p_A Replication protein E1; 91.3 0.11 3.8E-06 50.7 3.4 27 50-76 124-150 (305)
484 2woo_A ATPase GET3; tail-ancho 91.3 0.22 7.5E-06 49.5 5.6 38 50-87 17-54 (329)
485 2d2e_A SUFC protein; ABC-ATPas 91.2 0.12 4E-06 49.2 3.4 24 52-75 29-52 (250)
486 1b0u_A Histidine permease; ABC 91.2 0.098 3.3E-06 50.1 2.8 26 51-76 31-56 (262)
487 3gfo_A Cobalt import ATP-bindi 91.2 0.098 3.4E-06 50.4 2.8 24 52-75 34-57 (275)
488 3fkq_A NTRC-like two-domain pr 91.2 0.18 6.2E-06 51.1 5.0 38 50-87 141-179 (373)
489 3con_A GTPase NRAS; structural 91.2 0.11 3.8E-06 46.7 3.1 23 53-75 22-44 (190)
490 2lkc_A Translation initiation 91.1 0.12 4.1E-06 45.9 3.2 26 50-75 6-31 (178)
491 1r8s_A ADP-ribosylation factor 91.1 0.13 4.5E-06 44.8 3.4 21 55-75 3-23 (164)
492 2woj_A ATPase GET3; tail-ancho 91.1 0.21 7.2E-06 50.1 5.3 38 50-87 16-55 (354)
493 1mv5_A LMRA, multidrug resista 91.1 0.11 3.9E-06 49.0 3.1 26 51-76 27-52 (243)
494 3ihw_A Centg3; RAS, centaurin, 91.0 0.13 4.3E-06 46.3 3.3 24 52-75 20-43 (184)
495 2nzj_A GTP-binding protein REM 91.0 0.12 4.1E-06 45.7 3.1 24 52-75 4-27 (175)
496 1nij_A Hypothetical protein YJ 91.0 0.12 4.1E-06 51.1 3.4 26 51-76 3-28 (318)
497 2zu0_C Probable ATP-dependent 91.0 0.12 4.2E-06 49.6 3.3 25 51-75 45-69 (267)
498 1u8z_A RAS-related protein RAL 91.0 0.12 4.2E-06 45.1 3.1 24 52-75 4-27 (168)
499 1ji0_A ABC transporter; ATP bi 91.0 0.11 3.7E-06 49.1 2.8 25 52-76 32-56 (240)
500 4g1u_C Hemin import ATP-bindin 90.9 0.11 3.7E-06 49.9 2.8 25 52-76 37-61 (266)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.9e-39 Score=350.09 Aligned_cols=291 Identities=15% Similarity=0.109 Sum_probs=221.5
Q ss_pred ccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHH----hhccccCceEEEecccccc--ccchh--hHhH
Q 047214 31 VGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFN----QFSSEFEGRCFLSDIRKNS--ETGGG--KILS 102 (658)
Q Consensus 31 vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~----~~~~~f~~~~~~~~~~~~~--~~~~~--~~l~ 102 (658)
|||+.++++|.++|....+.+.++|+|+||||+||||||+++++ +++.+|+.++|+. +++.. +...+ +++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCCCCHHHHHHHHHH
Confidence 59999999999999764324689999999999999999999996 5888999999997 66543 22211 2333
Q ss_pred HHhhhcC-------CCC-----chhHHHHhcCc-ceEEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchHHHHhhcC
Q 047214 103 EKLEVAG-------ANI-----PHFTKERVRRM-KVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRVLEKFRG 169 (658)
Q Consensus 103 ~~l~~~~-------~~~-----~~~l~~~l~~~-~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~~~~~~~ 169 (658)
++..... .+. ...+++.++++ ++||||||||+...+ .+.. .+|++||||||+..++..+..
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCC
Confidence 2221110 011 46788889996 999999999998865 2221 279999999999998887622
Q ss_pred CCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhcccccccHHHHHHHHH-HHhhcCCc
Q 047214 170 EKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCLKRKSHWENLLH-DLNRICES 248 (658)
Q Consensus 170 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~~~-~l~~~~~~ 248 (658)
....|.|++|+.++|++||.+++++.. ..+..++++++|+++|+|+||||.++|+.++.+. .+|...+. .+.....
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~- 360 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMP-VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGL- 360 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCS-
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCC-CchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccH-
Confidence 446899999999999999999986653 2467788899999999999999999999998764 23322222 2222223
Q ss_pred chhhHHhhhhhhccCCChhhhchhc-----------eeeecCCCCCHHHHHHHhcc---------------ccccchHHh
Q 047214 249 DIHDIYKKLKITFDELTPRVQSIFL-----------DIACFFEGEDKDFVARILDD---------------SESDGLDVL 302 (658)
Q Consensus 249 ~~~~l~~~l~~s~~~L~~~~~~~l~-----------~~a~fp~~~~~~~l~~~~~~---------------~~~~~l~~L 302 (658)
..+..++.+||+.||++.|.||+ |||+||+++.++ +..|+++ ++..++++|
T Consensus 361 --~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~-i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L 437 (549)
T 2a5y_B 361 --VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP-VKLWSCVIPVDICSNEEEQLDDEVADRLKRL 437 (549)
T ss_dssp --STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE-HHHHHHHSCC-------CCCTHHHHHHHHHT
T ss_pred --HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee-eeeeeeeccceeccCCCCCCHHHHHHHHHHH
Confidence 33588899999999988899988 999999998776 5566553 122379999
Q ss_pred hhccCceee----CCeEEeehHHHHHHHHHhhhccc
Q 047214 303 IDKSLISIS----GNCLQMHDLLQEMGQQIVRQESE 334 (658)
Q Consensus 303 ~~~~ll~~~----~~~~~~H~~v~~~~~~~~~~~~~ 334 (658)
++++|++.. ...|+||+++|+||++++.++++
T Consensus 438 ~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 438 SKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp TTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 999999876 34799999999999998877753
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.8e-34 Score=344.61 Aligned_cols=297 Identities=23% Similarity=0.326 Sum_probs=228.9
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh---hccccCceE-EEeccccccccchh
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ---FSSEFEGRC-FLSDIRKNSETGGG 98 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~---~~~~f~~~~-~~~~~~~~~~~~~~ 98 (658)
.|.....||||++++++|.++|.... ++.++|+|+||||+||||||++++++ ...+|...+ |+. ++........
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~-~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN-GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQDKSGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT-TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCCHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc-CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcCchHHH
Confidence 55667789999999999999997544 67899999999999999999999987 355576555 555 6554332222
Q ss_pred ---hHhHHHhhhcCC------CC----chhHHHHhcCc--ceEEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchHH
Q 047214 99 ---KILSEKLEVAGA------NI----PHFTKERVRRM--KVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRV 163 (658)
Q Consensus 99 ---~~l~~~l~~~~~------~~----~~~l~~~l~~~--~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~ 163 (658)
+.+...+..... .. .+.+++.+.++ ++||||||||+...|+.+ ++|++||+|||++.+
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHH
Confidence 222222222211 11 34455555555 999999999998877765 578999999999988
Q ss_pred HHhhcCCCceEEcCC-CChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhcccccccHHHHHHHHHHH
Q 047214 164 LEKFRGEKKIYRVNG-LEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCLKRKSHWENLLHDL 242 (658)
Q Consensus 164 ~~~~~~~~~~~~l~~-L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~~~~l 242 (658)
+..+.+....+.+.+ |+.++|++||...++.. .+..++.+++|+++|+|+||||.++|++++.+. ..|...+..+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l 345 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQL 345 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHH
Confidence 765446677899995 99999999999887433 234455789999999999999999999998775 4688888888
Q ss_pred hhcCC--------cchhhHHhhhhhhccCCChhhhchhceeeecCCCCCH--HHHHHHhc-c--ccccchHHhhhccCce
Q 047214 243 NRICE--------SDIHDIYKKLKITFDELTPRVQSIFLDIACFFEGEDK--DFVARILD-D--SESDGLDVLIDKSLIS 309 (658)
Q Consensus 243 ~~~~~--------~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp~~~~~--~~l~~~~~-~--~~~~~l~~L~~~~ll~ 309 (658)
..... ...+.+..++.+||+.|+++.|.||++||+||+++.+ ..+..++. + .++.++++|++++|++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~ 425 (1249)
T 3sfz_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLF 425 (1249)
T ss_dssp HSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred hhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceE
Confidence 65432 1235689999999999999999999999999998544 44444443 2 6788999999999999
Q ss_pred ee-CC---eEEeehHHHHHHHHHhhhc
Q 047214 310 IS-GN---CLQMHDLLQEMGQQIVRQE 332 (658)
Q Consensus 310 ~~-~~---~~~~H~~v~~~~~~~~~~~ 332 (658)
.. .+ +|+||+++|+|+++.+.++
T Consensus 426 ~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 426 CNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp EEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred EecCCCceEEEecHHHHHHHHhhhhHH
Confidence 77 33 4999999999999987765
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=3.5e-32 Score=301.31 Aligned_cols=292 Identities=22% Similarity=0.287 Sum_probs=218.4
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh---ccccC-ceEEEeccccccccchh
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF---SSEFE-GRCFLSDIRKNSETGGG 98 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~ 98 (658)
.|.....||||+.++++|.+++.... ++.++|+|+|+||+||||||.+++++. ...|+ .++|+. ++.......+
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~-~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~~~~~~ 196 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLK-GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQDKSGLL 196 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTST-TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCCHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhccc-CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCchHHHH
Confidence 45567789999999999999998543 568999999999999999999999864 67785 577776 5443222222
Q ss_pred hHhHH---HhhhcC------CCC----chhHHHHhcC--cceEEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchHH
Q 047214 99 KILSE---KLEVAG------ANI----PHFTKERVRR--MKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRV 163 (658)
Q Consensus 99 ~~l~~---~l~~~~------~~~----~~~l~~~l~~--~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~ 163 (658)
..+.. .++... ... ...+.+.+.+ +++||||||+|+...++.+ .++++||+|||+..+
T Consensus 197 ~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 197 MKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGG
T ss_pred HHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHH
Confidence 22222 222111 111 3445555655 6899999999997766543 568999999999987
Q ss_pred HHhhcCCCceEEc---CCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhcccccccHHHHHHHHH
Q 047214 164 LEKFRGEKKIYRV---NGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCLKRKSHWENLLH 240 (658)
Q Consensus 164 ~~~~~~~~~~~~l---~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~~~~~w~~~~~ 240 (658)
...+. ...+.+ ++|+.+++++||.+.++.. .....+.+.+|++.|+|+|+||.++|++++.+. ..|...+.
T Consensus 270 ~~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~ 343 (591)
T 1z6t_A 270 TDSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLK 343 (591)
T ss_dssp GTTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred HHhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHH
Confidence 76642 233444 5899999999999987542 223345689999999999999999999997763 36888888
Q ss_pred HHhhcCC--------cchhhHHhhhhhhccCCChhhhchhceeeecCCCC--CHHHHHHHhcc---ccccchHHhhhccC
Q 047214 241 DLNRICE--------SDIHDIYKKLKITFDELTPRVQSIFLDIACFFEGE--DKDFVARILDD---SESDGLDVLIDKSL 307 (658)
Q Consensus 241 ~l~~~~~--------~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp~~~--~~~~l~~~~~~---~~~~~l~~L~~~~l 307 (658)
.+..... .....+..++..||+.||++.|.||+++|+||++. +.+.+..++.. .+..++..|++++|
T Consensus 344 ~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~L 423 (591)
T 1z6t_A 344 QLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSL 423 (591)
T ss_dssp HHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcC
Confidence 7765431 12246899999999999999999999999999874 44555554433 57788999999999
Q ss_pred ceee--C--CeEEeehHHHHHHHHHh
Q 047214 308 ISIS--G--NCLQMHDLLQEMGQQIV 329 (658)
Q Consensus 308 l~~~--~--~~~~~H~~v~~~~~~~~ 329 (658)
+... . ..|+||+++|+|++...
T Consensus 424 l~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 424 LFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp SEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred eEEecCCCccEEEEcHHHHHHHHhhh
Confidence 9865 2 37999999999999873
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.98 E-value=1e-32 Score=303.85 Aligned_cols=268 Identities=15% Similarity=0.152 Sum_probs=201.6
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh--hccccCc-eEEEeccccccccchh-hHhHH
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ--FSSEFEG-RCFLSDIRKNSETGGG-KILSE 103 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~--~~~~f~~-~~~~~~~~~~~~~~~~-~~l~~ 103 (658)
+..|||+.++++|.++|... ++.++|+|+||||+||||||++++++ ++.+|+. ++|+. ++..++...+ ..+.+
T Consensus 128 k~~VGRe~eLeeL~elL~~~--d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC--CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCCSSSHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc--CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCCCCCHHHHHHHHHH
Confidence 34599999999999999853 34789999999999999999999975 6788997 67777 6655443322 33333
Q ss_pred HhhhcC------CC----C-------chhHHHHh---cCcceEEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchHH
Q 047214 104 KLEVAG------AN----I-------PHFTKERV---RRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRV 163 (658)
Q Consensus 104 ~l~~~~------~~----~-------~~~l~~~l---~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~ 163 (658)
.++... .+ . .+.+++.+ .++++||||||||+.+.|+.+. +|++||||||++.+
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~V 277 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQV 277 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHH
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHH
Confidence 222211 00 0 23455544 5789999999999988888762 68999999999998
Q ss_pred HHhhcCCCceEEcC------CCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhcccccc--cHHHH
Q 047214 164 LEKFRGEKKIYRVN------GLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCLK--RKSHW 235 (658)
Q Consensus 164 ~~~~~~~~~~~~l~------~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~~--~~~~w 235 (658)
+..+ .....+.++ +|+.+||++||.+.. +.. ..+...+ .|+|+||||.++|+.++.+ ....|
T Consensus 278 a~~l-~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~e---ICgGLPLALkLaGs~Lr~k~~s~eeW 347 (1221)
T 1vt4_I 278 TDFL-SAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-----PQDLPRE---VLTTNPRRLSIIAESIRDGLATWDNW 347 (1221)
T ss_dssp HHHH-HHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-----TTTHHHH---HCCCCHHHHHHHHHHHHHSCSSHHHH
T ss_pred HHhc-CCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-----HHHHHHH---HhCCCHHHHHHHHHHHhCCCCCHHHH
Confidence 7654 222345555 899999999999984 221 1222333 4999999999999999887 66778
Q ss_pred HHHHHHHhhcCCcchhhHHhhhhhhccCCChhh-hchhceeeecCCCCCH--HHHHH-Hhcc---ccccchHHhhhccCc
Q 047214 236 ENLLHDLNRICESDIHDIYKKLKITFDELTPRV-QSIFLDIACFFEGEDK--DFVAR-ILDD---SESDGLDVLIDKSLI 308 (658)
Q Consensus 236 ~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~-~~~l~~~a~fp~~~~~--~~l~~-~~~~---~~~~~l~~L~~~~ll 308 (658)
... ....+..++.+||+.||++. |.||+++|+||.++.+ +.+.. |.++ ++..++++|++++|+
T Consensus 348 ~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLL 417 (1221)
T 1vt4_I 348 KHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417 (1221)
T ss_dssp HHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSS
T ss_pred hcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCE
Confidence 643 12567999999999999999 9999999999997654 44444 4443 477889999999999
Q ss_pred eee--CCeEEeehHHHHHH
Q 047214 309 SIS--GNCLQMHDLLQEMG 325 (658)
Q Consensus 309 ~~~--~~~~~~H~~v~~~~ 325 (658)
+.. .++|+||+++++++
T Consensus 418 q~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 418 EKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SBCSSSSEEBCCCHHHHHH
T ss_pred EEeCCCCEEEehHHHHHHh
Confidence 976 56899999998854
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=3.5e-24 Score=230.98 Aligned_cols=280 Identities=20% Similarity=0.239 Sum_probs=229.5
Q ss_pred ceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC
Q 047214 361 AIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS 440 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~ 440 (658)
.++.+.+..+.+ ..+....|.++++|++|++++|.+ ....|..+..++ +|++|+|++|.++.+|.
T Consensus 33 ~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~i------------~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 33 ETRLLDLGKNRI--KTLNQDEFASFPHLEELELNENIV------------SAVEPGAFNNLF-NLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp TCSEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCC------------CEECTTTTTTCT-TCCEEECCSSCCCSCCT
T ss_pred CCcEEECCCCcc--ceECHhHccCCCCCCEEECCCCcc------------CEeChhhhhCCc-cCCEEECCCCcCCccCc
Confidence 456665555544 345567899999999999999998 344688899998 99999999999999997
Q ss_pred CC--CCCCccEEEecCCCccccc-ccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcccccc-cccCCCC
Q 047214 441 NF--KPENLVELNLHFSKVEQLW-EGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFACVPS-SIQNFKY 514 (658)
Q Consensus 441 ~~--~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~ 514 (658)
.. .+++|++|+|++|.+..++ ..+..+++|++|++++|......+ +.++++|++|++++|.+..++. .+..+++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCC
Confidence 64 8999999999999998764 458899999999999995333333 8999999999999999988875 5889999
Q ss_pred CCEEeccCCCCCCcCCC--CCCCCCCcEEeccCCCCccccCccc---CCccEEEccccccccccc-cccCCCCCCEEecC
Q 047214 515 LSALSFEGCKSLRSFPS--NFRFVCPVTINFSSCVNLIEFPQIS---GKITRLYLGQSAIEEVPS-SIECLTDLEVLDLR 588 (658)
Q Consensus 515 L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~---~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~ 588 (658)
|+.|++++| .+..++. ...+++|+.|++++|..+..+|... .+|+.|++++|.++.+|. .+..+++|++|+++
T Consensus 178 L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 178 LIVLRLRHL-NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256 (477)
T ss_dssp CCEEEEESC-CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECC
T ss_pred CcEEeCCCC-cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECC
Confidence 999999998 4555554 3379999999999998887776532 489999999999999985 48899999999999
Q ss_pred CCccchhhhhhhcCCCCCcEEeccCCcCCcc----CCCCCCcccEEeccCCccccccCC----CCCCccEEeccCCCC
Q 047214 589 DCKRLKRISTRFCKLRSLVDLFLHGCLNLQS----LPALPLCLKSLDLRDCKMLQSLPE----LPSCLEALDLTSCNM 658 (658)
Q Consensus 589 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~----l~~l~~~L~~L~l~~~~~l~~i~~----~~~~L~~L~l~~~~~ 658 (658)
+|......+..+..+++|+.|++++|..-.. +..+++ |++|++++|. ++.+|. .+++|+.|++++|++
T Consensus 257 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 257 YNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY-LRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp SSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT-CCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred CCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc-CCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCc
Confidence 9986555556688999999999999863222 236788 9999999997 666664 357899999999974
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=7.9e-24 Score=218.28 Aligned_cols=270 Identities=18% Similarity=0.227 Sum_probs=156.3
Q ss_pred ceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC
Q 047214 361 AIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS 440 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~ 440 (658)
.++.+.+....+... ..+..+++|++|++++|.+.. ++. +..++ +|++|++++|.++.+|.
T Consensus 45 ~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~~-------------~~~-~~~l~-~L~~L~L~~n~i~~~~~ 105 (347)
T 4fmz_A 45 SITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQITD-------------ISP-LSNLV-KLTNLYIGTNKITDISA 105 (347)
T ss_dssp TCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCC-------------CGG-GTTCT-TCCEEECCSSCCCCCGG
T ss_pred cccEEEEeCCccccc----hhhhhcCCccEEEccCCcccc-------------chh-hhcCC-cCCEEEccCCcccCchH
Confidence 345555554444332 236667777777777777632 222 55555 67777777776666655
Q ss_pred CCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCcccccccccCCCCCCEEe
Q 047214 441 NFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALS 519 (658)
Q Consensus 441 ~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 519 (658)
...+++|++|++++|.+..++. +..+++|++|++++|......+ +..+++|++|+++++.+..++. +..+++|+.|+
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~ 183 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLS 183 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEE
T ss_pred HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEE
Confidence 4466677777777776666655 5666666666666665555555 6666666666666655555543 55556666666
Q ss_pred ccCCCCCCcCCCC----------------------CCCCCCcEEeccCCCCccccC--cccCCccEEEcccccccccccc
Q 047214 520 FEGCKSLRSFPSN----------------------FRFVCPVTINFSSCVNLIEFP--QISGKITRLYLGQSAIEEVPSS 575 (658)
Q Consensus 520 l~~~~~l~~~~~~----------------------~~~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~~~i~~~~~~ 575 (658)
+++| .+..++.. ..+++|+.|++++|. +..++ ...++|+.|++++|.+..++ .
T Consensus 184 l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~-~ 260 (347)
T 4fmz_A 184 LNYN-QIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQISDIN-A 260 (347)
T ss_dssp CTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG-G
T ss_pred ccCC-cccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCccCCCh-h
Confidence 6555 33333332 344555555555543 22222 23345666666666666553 3
Q ss_pred ccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC----CCCCcccEEeccCCccccccC--CCCCCcc
Q 047214 576 IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP----ALPLCLKSLDLRDCKMLQSLP--ELPSCLE 649 (658)
Q Consensus 576 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~----~l~~~L~~L~l~~~~~l~~i~--~~~~~L~ 649 (658)
+..+++|++|++++|. +..++ .+..+++|+.|++++|..-...+ .+|+ |++|++++|+ ++.++ ..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~~n~-l~~~~~~~~l~~L~ 336 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQ-ISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN-LTTLFLSQNH-ITDIRPLASLSKMD 336 (347)
T ss_dssp GTTCTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTT-CSEEECCSSS-CCCCGGGGGCTTCS
T ss_pred HhcCCCcCEEEccCCc-cCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhcccc-CCEEEccCCc-cccccChhhhhccc
Confidence 5666666666666664 23333 35666777777777765222222 5677 7777777777 34433 2566788
Q ss_pred EEeccCCCC
Q 047214 650 ALDLTSCNM 658 (658)
Q Consensus 650 ~L~l~~~~~ 658 (658)
.|++++|+|
T Consensus 337 ~L~l~~N~i 345 (347)
T 4fmz_A 337 SADFANQVI 345 (347)
T ss_dssp EESSSCC--
T ss_pred eeehhhhcc
Confidence 888887764
No 7
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=8.5e-24 Score=221.65 Aligned_cols=273 Identities=15% Similarity=0.140 Sum_probs=182.2
Q ss_pred eeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC
Q 047214 362 IEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN 441 (658)
Q Consensus 362 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~ 441 (658)
++.+.+..+.+ ..++...+..+++|++|++++|.+. ...+..+..++ +|++|++++|.+..+|+.
T Consensus 47 l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~------------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~ 111 (390)
T 3o6n_A 47 QKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIE------------EIDTYAFAYAH-TIQKLYMGFNAIRYLPPH 111 (390)
T ss_dssp CSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCC------------EECTTTTTTCT-TCCEEECCSSCCCCCCTT
T ss_pred ceEEEecCCch--hhCChhHhcccccCcEEECCCCccc------------ccChhhccCCC-CcCEEECCCCCCCcCCHH
Confidence 34444433333 3356677888889999999988872 23445777777 888999988888877665
Q ss_pred C--CCCCccEEEecCCCccccccc-ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccccccccCCCCC
Q 047214 442 F--KPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPSSIQNFKYL 515 (658)
Q Consensus 442 ~--~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L 515 (658)
. .+++|++|++++|.+..+|.. +..+++|++|++++|. +..++ ++.+++|++|++++|.+..++ +..+++|
T Consensus 112 ~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L 188 (390)
T 3o6n_A 112 VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSL 188 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTC
T ss_pred HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccc--ccccccc
Confidence 3 788899999998888888877 4788889999988884 34443 788888888888888887663 4556666
Q ss_pred CEEeccCCCCCCcCCCC------------------CCCCCCcEEeccCCCCccccC--cccCCccEEEccccccccc-cc
Q 047214 516 SALSFEGCKSLRSFPSN------------------FRFVCPVTINFSSCVNLIEFP--QISGKITRLYLGQSAIEEV-PS 574 (658)
Q Consensus 516 ~~L~l~~~~~l~~~~~~------------------~~~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~~~i~~~-~~ 574 (658)
+.|++++| .+..++.. ..+++|+.|++++|. +...+ ...++|+.|++++|.+..+ |.
T Consensus 189 ~~L~l~~n-~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 189 FHANVSYN-LLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp SEEECCSS-CCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESG
T ss_pred ceeecccc-cccccCCCCcceEEECCCCeeeeccccccccccEEECCCCC-CcccHHHcCCCCccEEECCCCcCCCcChh
Confidence 66666655 23322110 113456666666553 22222 1345667777777777655 44
Q ss_pred cccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC----CCCCcccEEeccCCccccccC-CCCCCcc
Q 047214 575 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP----ALPLCLKSLDLRDCKMLQSLP-ELPSCLE 649 (658)
Q Consensus 575 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~----~l~~~L~~L~l~~~~~l~~i~-~~~~~L~ 649 (658)
.+..+++|++|++++|. +..+|..+..+++|++|++++|. +..+| .+++ |++|++++|+ ++.+| ..+++|+
T Consensus 267 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~-L~~L~L~~N~-i~~~~~~~~~~L~ 342 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR-LENLYLDHNS-IVTLKLSTHHTLK 342 (390)
T ss_dssp GGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTT-CSEEECCSSC-CCCCCCCTTCCCS
T ss_pred HccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCc-ceecCccccccCc-CCEEECCCCc-cceeCchhhccCC
Confidence 56677777777777765 34455555667777777777764 44554 3566 7777777776 44454 3567788
Q ss_pred EEeccCCCC
Q 047214 650 ALDLTSCNM 658 (658)
Q Consensus 650 ~L~l~~~~~ 658 (658)
.|++++|++
T Consensus 343 ~L~l~~N~~ 351 (390)
T 3o6n_A 343 NLTLSHNDW 351 (390)
T ss_dssp EEECCSSCE
T ss_pred EEEcCCCCc
Confidence 888888764
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1e-23 Score=233.31 Aligned_cols=263 Identities=15% Similarity=0.121 Sum_probs=178.4
Q ss_pred cccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC--CCCCccEEEe
Q 047214 375 INLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF--KPENLVELNL 452 (658)
Q Consensus 375 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L 452 (658)
..++...|..+++|++|++++|.+. ...|..+..++ +|++|+|++|.+..+|+.. .+++|++|+|
T Consensus 64 ~~lp~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 64 RKLPAALLDSFRQVELLNLNDLQIE------------EIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp SEECTHHHHHCCCCSEEECTTSCCC------------EECTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcCHHHHccCCCCcEEECCCCCCC------------CCChHHhcCCC-CCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 3456677888888999999988873 33455777877 8888999888888877654 7888899999
Q ss_pred cCCCccccccc-ccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcC
Q 047214 453 HFSKVEQLWEG-KKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSF 529 (658)
Q Consensus 453 ~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 529 (658)
++|.+..+|.. +..+++|++|++++|......| ++.+++|++|++++|.+..++ +..+++|+.|++++| .+..+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n-~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN-LLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSS-CCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccC-ccccc
Confidence 88888888876 4788888899888885433333 788888888888888887764 455666777766665 33322
Q ss_pred CCC------------------CCCCCCcEEeccCCCCccccC--cccCCccEEEccccccccc-cccccCCCCCCEEecC
Q 047214 530 PSN------------------FRFVCPVTINFSSCVNLIEFP--QISGKITRLYLGQSAIEEV-PSSIECLTDLEVLDLR 588 (658)
Q Consensus 530 ~~~------------------~~~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~ 588 (658)
+.. ...++|+.|++++|. +...+ ..+++|+.|++++|.+..+ |..+..+++|+.|+++
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred cCCchhheeeccCCcccccccccCCCCCEEECCCCC-CCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence 110 012456666666553 22222 1345666777777777654 4456677777777777
Q ss_pred CCccchhhhhhhcCCCCCcEEeccCCcCCccCC----CCCCcccEEeccCCccccccC-CCCCCccEEeccCCCC
Q 047214 589 DCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP----ALPLCLKSLDLRDCKMLQSLP-ELPSCLEALDLTSCNM 658 (658)
Q Consensus 589 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~----~l~~~L~~L~l~~~~~l~~i~-~~~~~L~~L~l~~~~~ 658 (658)
+|. +..+|..+..+++|+.|++++|. +..+| .+++ |++|++++|. +..+| ..+++|+.|++++|++
T Consensus 287 ~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~-L~~L~L~~N~-l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 287 NNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDR-LENLYLDHNS-IVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp TSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTT-CSEEECCSSC-CCCCCCCTTCCCSEEECCSSCE
T ss_pred CCC-CCCCCcccccCCCCcEEECCCCC-CCccCcccccCCC-CCEEECCCCC-CCCcChhhcCCCCEEEeeCCCC
Confidence 765 34455555667777777777764 44555 3666 7777777776 34444 3567788888888764
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7.3e-24 Score=239.98 Aligned_cols=290 Identities=15% Similarity=0.168 Sum_probs=183.4
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeecCc-ccC--cchhh--h---------------cccCceecCC--C
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPK-LLG--MSIEE--Q---------------LSDSKVLLPD--G 417 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~~--~---------------~~~~~~~~p~--~ 417 (658)
..++.+.+..+.. ....+..+.++++|+.|++++|. +.+ .|..- . ..+.-..+|. .
T Consensus 491 ~~L~~L~Ls~N~l--~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 491 KDLTDVELYNCPN--MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp TTCCEEEEESCTT--CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred CCCCEEECcCCCC--CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 3455555544332 12233667788888888888887 654 22110 0 0011124455 4
Q ss_pred CCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCC-ccEEeccCCCcccccC--CCcCC--Cc
Q 047214 418 LDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFK-LKSINLSHCRHFIDMS--YPSAP--NL 492 (658)
Q Consensus 418 ~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~-L~~L~l~~~~~~~~~~--l~~l~--~L 492 (658)
++.++ +|++|++++|.+..+|....+++|+.|+|++|.+..+|..+..+++ |+.|++++|. +..+| +..++ +|
T Consensus 569 l~~L~-~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 569 LQKMV-KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVM 646 (876)
T ss_dssp HTTCT-TCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCE
T ss_pred hhcCC-CCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCC
Confidence 55555 5555555555555555222555555555555555555555555555 5555555553 33444 33332 25
Q ss_pred cEEEeecCCcccccc----ccc--CCCCCCEEeccCCCCCCcCCCCC--CCCCCcEEeccCCCCccccCccc--------
Q 047214 493 ETYLLDYTNFACVPS----SIQ--NFKYLSALSFEGCKSLRSFPSNF--RFVCPVTINFSSCVNLIEFPQIS-------- 556 (658)
Q Consensus 493 ~~L~l~~~~~~~~~~----~~~--~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~-------- 556 (658)
+.|++++|.+...++ .+. .+++|+.|++++| .+..+|... .+++|+.|++++|. +..+|...
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNY 724 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCC
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccc
Confidence 555555555533221 111 2335666666665 444555533 57888888888874 44666532
Q ss_pred ---CCccEEEcccccccccccccc--CCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccC------CcCCccCC----
Q 047214 557 ---GKITRLYLGQSAIEEVPSSIE--CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHG------CLNLQSLP---- 621 (658)
Q Consensus 557 ---~~L~~L~l~~~~i~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~------~~~l~~l~---- 621 (658)
++|+.|+|++|.++.+|..+. .+++|+.|++++|... .+|..+..+++|+.|++++ |...+.+|
T Consensus 725 ~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~-~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~ 803 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803 (876)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGG
T ss_pred cccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCC-ccchhhhcCCCCCEEECCCCCCcccccccccChHHHh
Confidence 178899999999999998876 8999999999998754 4888899999999999977 44445555
Q ss_pred CCCCcccEEeccCCccccccCC-CCCCccEEeccCCCC
Q 047214 622 ALPLCLKSLDLRDCKMLQSLPE-LPSCLEALDLTSCNM 658 (658)
Q Consensus 622 ~l~~~L~~L~l~~~~~l~~i~~-~~~~L~~L~l~~~~~ 658 (658)
.+++ |+.|++++|.. +.+|. ..++|+.|+|++|++
T Consensus 804 ~L~~-L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 804 TCPS-LIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp GCSS-CCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred cCCC-CCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence 5788 99999999985 89997 567899999999975
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=6e-24 Score=236.54 Aligned_cols=289 Identities=15% Similarity=0.211 Sum_probs=201.4
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeecCc-ccC--cchhhh----------------cccCceecCC--CC
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPK-LLG--MSIEEQ----------------LSDSKVLLPD--GL 418 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~--~~~~~~----------------~~~~~~~~p~--~~ 418 (658)
..++.+.+..+.+. ...+..+.++++|++|++++|. +.+ .|..-+ ..+.-..+|. .+
T Consensus 249 ~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l 326 (636)
T 4eco_A 249 KDLTDVEVYNCPNL--TKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326 (636)
T ss_dssp TTCCEEEEECCTTC--SSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred CCCCEEEecCCcCC--ccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence 34555555443331 2233567777778888888776 644 221100 0011124566 66
Q ss_pred CCcccccceEEecccCCC-CCCCCC-CCCCccEEEecCCCcccccccccCCCC-ccEEeccCCCcccccC--CCcC--CC
Q 047214 419 DYLPKNLRYLHWDKYPLR-TLPSNF-KPENLVELNLHFSKVEQLWEGKKEAFK-LKSINLSHCRHFIDMS--YPSA--PN 491 (658)
Q Consensus 419 ~~l~~~L~~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~-L~~L~l~~~~~~~~~~--l~~l--~~ 491 (658)
+.++ +|++|++++|.+. .+| .+ .+++|++|++++|.+..+|..+..+++ |++|++++|. +..+| +..+ ++
T Consensus 327 ~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~ 403 (636)
T 4eco_A 327 QKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSV 403 (636)
T ss_dssp TTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSC
T ss_pred ccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCc
Confidence 6666 6777777777776 666 33 666777777777777777766777777 7777777774 44666 4443 36
Q ss_pred ccEEEeecCCccc-cccccc-------CCCCCCEEeccCCCCCCcCCCCC--CCCCCcEEeccCCCCccccCccc-C---
Q 047214 492 LETYLLDYTNFAC-VPSSIQ-------NFKYLSALSFEGCKSLRSFPSNF--RFVCPVTINFSSCVNLIEFPQIS-G--- 557 (658)
Q Consensus 492 L~~L~l~~~~~~~-~~~~~~-------~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~-~--- 557 (658)
|++|++++|.+.. +|..+. .+++|++|++++| .++.+|... .+++|+.|++++|. +..+|... .
T Consensus 404 L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~ 481 (636)
T 4eco_A 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDEN 481 (636)
T ss_dssp EEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETT
T ss_pred cCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhcccc
Confidence 7777777777644 344455 6667888888876 555676643 58899999999875 44666532 1
Q ss_pred -------CccEEEcccccccccccccc--CCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccC------CcCCccCC-
Q 047214 558 -------KITRLYLGQSAIEEVPSSIE--CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHG------CLNLQSLP- 621 (658)
Q Consensus 558 -------~L~~L~l~~~~i~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~------~~~l~~l~- 621 (658)
+|+.|++++|.++.+|..+. .+++|+.|++++|.... +|..+..+++|+.|++++ |...+.+|
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp EECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred ccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 89999999999999998876 99999999999998554 888899999999999954 44455566
Q ss_pred ---CCCCcccEEeccCCccccccCC-CCCCccEEeccCCCC
Q 047214 622 ---ALPLCLKSLDLRDCKMLQSLPE-LPSCLEALDLTSCNM 658 (658)
Q Consensus 622 ---~l~~~L~~L~l~~~~~l~~i~~-~~~~L~~L~l~~~~~ 658 (658)
.+++ |++|++++|.. +.+|. ..++|+.|++++|++
T Consensus 561 ~l~~l~~-L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l 599 (636)
T 4eco_A 561 GITLCPS-LTQLQIGSNDI-RKVNEKITPNISVLDIKDNPN 599 (636)
T ss_dssp TGGGCSS-CCEEECCSSCC-CBCCSCCCTTCCEEECCSCTT
T ss_pred HHhcCCC-CCEEECCCCcC-CccCHhHhCcCCEEECcCCCC
Confidence 5788 99999999995 89996 568899999999975
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.4e-22 Score=208.99 Aligned_cols=210 Identities=17% Similarity=0.184 Sum_probs=153.1
Q ss_pred CCCcccccceEEecccC-CCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC-CCcCCCccEE
Q 047214 418 LDYLPKNLRYLHWDKYP-LRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETY 495 (658)
Q Consensus 418 ~~~l~~~L~~L~l~~~~-l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L 495 (658)
+..++ +|++|++++|. +..++....+++|++|++++|.+..++. +..+++|++|++++| .+..++ +..+++|+.|
T Consensus 128 ~~~l~-~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L 204 (347)
T 4fmz_A 128 LANLT-KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISPLASLTSLHYF 204 (347)
T ss_dssp GTTCT-TCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGGGGGCTTCCEE
T ss_pred hccCC-ceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-cccccccccCCCcccee
Confidence 33444 55555555552 2233332255556666666665555544 556666777777766 344555 6677777777
Q ss_pred EeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccC--cccCCccEEEcccccccccc
Q 047214 496 LLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFP--QISGKITRLYLGQSAIEEVP 573 (658)
Q Consensus 496 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~~~i~~~~ 573 (658)
++.+|.+..++. +..+++|++|++++| .++.++....+++|+.|++++|. +..++ ..+++|+.|++++|.+..++
T Consensus 205 ~l~~n~l~~~~~-~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~ 281 (347)
T 4fmz_A 205 TAYVNQITDITP-VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTNQ-ISDINAVKDLTKLKMLNVGSNQISDIS 281 (347)
T ss_dssp ECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred ecccCCCCCCch-hhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCCc-cCCChhHhcCCCcCEEEccCCccCCCh
Confidence 777777766654 778899999999988 56777776689999999999984 44444 34678999999999999885
Q ss_pred ccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC---CCCCcccEEeccCCc
Q 047214 574 SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP---ALPLCLKSLDLRDCK 636 (658)
Q Consensus 574 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~---~l~~~L~~L~l~~~~ 636 (658)
.+..+++|+.|++++|......+..++.+++|+.|++++|+ +..++ .+++ |++|++++|+
T Consensus 282 -~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~l~~-L~~L~l~~N~ 344 (347)
T 4fmz_A 282 -VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRPLASLSK-MDSADFANQV 344 (347)
T ss_dssp -GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGGGGGCTT-CSEESSSCC-
T ss_pred -hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccChhhhhc-cceeehhhhc
Confidence 47899999999999998777778889999999999999987 44443 6888 9999999998
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=2.3e-23 Score=235.92 Aligned_cols=259 Identities=21% Similarity=0.338 Sum_probs=177.7
Q ss_pred hcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccC-CCC--CCCCC--------CCCCccEE
Q 047214 382 FTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYP-LRT--LPSNF--------KPENLVEL 450 (658)
Q Consensus 382 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~-l~~--lp~~~--------~l~~L~~L 450 (658)
|.++++|++|++++|.+. ..+|..++.++ +|++|++++|+ ++. +|..+ .+++|+.|
T Consensus 487 f~~L~~L~~L~Ls~N~l~------------~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 487 WSNLKDLTDVELYNCPNM------------TQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp GGGCTTCCEEEEESCTTC------------CSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred hccCCCCCEEECcCCCCC------------ccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 449999999999999873 45777788877 88888888886 663 55432 44578888
Q ss_pred EecCCCcccccc--cccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCcccccccccCCCC-CCEEeccCCCCC
Q 047214 451 NLHFSKVEQLWE--GKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVPSSIQNFKY-LSALSFEGCKSL 526 (658)
Q Consensus 451 ~L~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l 526 (658)
+|++|.+..+|. .+..+++|+.|++++|. +..+| ++.+++|+.|++++|.+..+|..+..+++ |+.|++++|. +
T Consensus 554 ~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L 631 (876)
T 4ecn_A 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-L 631 (876)
T ss_dssp ECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-C
T ss_pred EeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-C
Confidence 888888777777 67778888888887774 44777 77777788888877777777777777777 7777777763 4
Q ss_pred CcCCCCCC---CCCCcEEeccCCCC----------------------------ccccCc----ccCCccEEEcccccccc
Q 047214 527 RSFPSNFR---FVCPVTINFSSCVN----------------------------LIEFPQ----ISGKITRLYLGQSAIEE 571 (658)
Q Consensus 527 ~~~~~~~~---~~~L~~L~l~~~~~----------------------------l~~~~~----~~~~L~~L~l~~~~i~~ 571 (658)
..+|..+. .++|+.|++++|.. +..+|. .+++|+.|++++|.+..
T Consensus 632 ~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS 711 (876)
T ss_dssp CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC
T ss_pred CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc
Confidence 56665431 22355555555432 223332 23466677777777776
Q ss_pred ccccccC--------CCCCCEEecCCCccchhhhhhhc--CCCCCcEEeccCCcCCccCC----CCCCcccEEeccC---
Q 047214 572 VPSSIEC--------LTDLEVLDLRDCKRLKRISTRFC--KLRSLVDLFLHGCLNLQSLP----ALPLCLKSLDLRD--- 634 (658)
Q Consensus 572 ~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~l~~l~----~l~~~L~~L~l~~--- 634 (658)
+|..+.. +++|+.|++++|. +..+|..+. .+++|+.|++++|. +..+| .+++ |+.|++++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~l~~L~~-L~~L~Ls~N~~ 788 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQPLNSSQ-LKAFGIRHQRD 788 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCGGGGCTT-CCEEECCCCBC
T ss_pred cChHHhccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCC-CCccchhhhcCCC-CCEEECCCCCC
Confidence 6665332 2277777777775 346676665 78888888888865 44455 5777 88888876
Q ss_pred ---CccccccCC---CCCCccEEeccCCCC
Q 047214 635 ---CKMLQSLPE---LPSCLEALDLTSCNM 658 (658)
Q Consensus 635 ---~~~l~~i~~---~~~~L~~L~l~~~~~ 658 (658)
|...+.+|. .+++|+.|+|++|++
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred cccccccccChHHHhcCCCCCEEECCCCCC
Confidence 444556664 467788888888875
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=3.7e-23 Score=210.79 Aligned_cols=215 Identities=23% Similarity=0.363 Sum_probs=165.6
Q ss_pred CCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC-CCCCccEEEecCCCcccccc
Q 047214 384 NMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF-KPENLVELNLHFSKVEQLWE 462 (658)
Q Consensus 384 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~ 462 (658)
...+++.|++++|.+ ..+|..++.++ +|++|++++|.+..+|..+ .+.+|++|+|++|.+..+|.
T Consensus 79 ~~~~l~~L~L~~n~l-------------~~lp~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~ 144 (328)
T 4fcg_A 79 TQPGRVALELRSVPL-------------PQFPDQAFRLS-HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPA 144 (328)
T ss_dssp TSTTCCEEEEESSCC-------------SSCCSCGGGGT-TCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCG
T ss_pred cccceeEEEccCCCc-------------hhcChhhhhCC-CCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcH
Confidence 357899999999997 36888899988 9999999999999999877 89999999999999999999
Q ss_pred cccCCCCccEEeccCCCcccccC--CCc---------CCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCC
Q 047214 463 GKKEAFKLKSINLSHCRHFIDMS--YPS---------APNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPS 531 (658)
Q Consensus 463 ~~~~l~~L~~L~l~~~~~~~~~~--l~~---------l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 531 (658)
.+..+++|++|++++|.....+| +.. +++|++|++++|.+..+|..+..+++|++|++++| .+..+|.
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~ 223 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGP 223 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCG
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCch
Confidence 99999999999999998888888 554 99999999999999999999999999999999998 5666665
Q ss_pred CC-CCCCCcEEeccCCCCccccCcc---cCCccEEEccccccc-cccccccCCCCCCEEecCCCccchhhhhhhcCCCCC
Q 047214 532 NF-RFVCPVTINFSSCVNLIEFPQI---SGKITRLYLGQSAIE-EVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSL 606 (658)
Q Consensus 532 ~~-~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 606 (658)
.+ .+++|+.|++++|...+.+|.. +++|+.|++++|.+. .+|..+..+++|++|++++|+..+.+|..++.+++|
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L 303 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTT
T ss_pred hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCc
Confidence 44 6788888888887666655542 234445555554332 444445555555555555555555555555555555
Q ss_pred cEEeccC
Q 047214 607 VDLFLHG 613 (658)
Q Consensus 607 ~~L~l~~ 613 (658)
+.+.+..
T Consensus 304 ~~l~l~~ 310 (328)
T 4fcg_A 304 CIILVPP 310 (328)
T ss_dssp CEEECCG
T ss_pred eEEeCCH
Confidence 5555543
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=2e-22 Score=211.28 Aligned_cols=255 Identities=18% Similarity=0.214 Sum_probs=199.3
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCC
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLP 439 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp 439 (658)
..++.+.+..+.+ ..++...|..+++|++|++++|.+.+ ..|..+..++ +|++|++++|.++.+|
T Consensus 69 ~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~-~L~~L~L~~n~l~~l~ 133 (390)
T 3o6n_A 69 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRY------------LPPHVFQNVP-LLTVLVLERNDLSSLP 133 (390)
T ss_dssp CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCC------------CCTTTTTTCT-TCCEEECCSSCCCCCC
T ss_pred ccCcEEECCCCcc--cccChhhccCCCCcCEEECCCCCCCc------------CCHHHhcCCC-CCCEEECCCCccCcCC
Confidence 4456666655444 34566688899999999999999833 3456678888 9999999999999999
Q ss_pred CCC--CCCCccEEEecCCCcccccc-cccCCCCccEEeccCCCcccccCCCcCCCccEE-------------------Ee
Q 047214 440 SNF--KPENLVELNLHFSKVEQLWE-GKKEAFKLKSINLSHCRHFIDMSYPSAPNLETY-------------------LL 497 (658)
Q Consensus 440 ~~~--~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L-------------------~l 497 (658)
... .+++|++|++++|.+..++. .+..+++|++|++++|. +..++++.+++|+.| ++
T Consensus 134 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l 212 (390)
T 3o6n_A 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDA 212 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEEC
T ss_pred HHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccccccccccceeecccccccccCCCCcceEEEC
Confidence 864 79999999999999988755 48889999999999984 444454455555554 44
Q ss_pred ecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCc---ccCCccEEEccccccccccc
Q 047214 498 DYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEEVPS 574 (658)
Q Consensus 498 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~~~~ 574 (658)
++|.+..+|. ..+++|+.|++++| .++..+....+++|+.|++++|......|. ..++|+.|++++|.++.+|.
T Consensus 213 ~~n~l~~~~~--~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (390)
T 3o6n_A 213 SHNSINVVRG--PVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 289 (390)
T ss_dssp CSSCCCEEEC--CCCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC
T ss_pred CCCeeeeccc--cccccccEEECCCC-CCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc
Confidence 4444544433 23468999999987 566666666899999999999864443343 35788999999999999998
Q ss_pred cccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC--CCCCcccEEeccCCc
Q 047214 575 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP--ALPLCLKSLDLRDCK 636 (658)
Q Consensus 575 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~l~~~L~~L~l~~~~ 636 (658)
.+..+++|++|++++|. +..+|..+..+++|+.|++++|+ +..++ .+++ |++|++++|+
T Consensus 290 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~-L~~L~l~~N~ 350 (390)
T 3o6n_A 290 YGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHT-LKNLTLSHND 350 (390)
T ss_dssp SSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCC-CSEEECCSSC
T ss_pred ccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeCchhhcc-CCEEEcCCCC
Confidence 88899999999999997 55778778889999999999987 55555 6888 9999999997
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=2.6e-23 Score=236.84 Aligned_cols=228 Identities=20% Similarity=0.252 Sum_probs=114.0
Q ss_pred cCCCCCCcccccceEEecccCCC-CCCCCC-CCCCccEEEecCCCcc-cccccccCCCCccEEeccCCCcccccC--CCc
Q 047214 414 LPDGLDYLPKNLRYLHWDKYPLR-TLPSNF-KPENLVELNLHFSKVE-QLWEGKKEAFKLKSINLSHCRHFIDMS--YPS 488 (658)
Q Consensus 414 ~p~~~~~l~~~L~~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~ 488 (658)
+|..+..++ +|++|++++|.+. .+|..+ .+++|++|++++|.+. .+|..+..+++|++|++++|.....+| +..
T Consensus 410 ~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 410 IPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp CCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred cCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 444444444 5555555555544 333333 4455555555555544 344445555555555555554333344 455
Q ss_pred CCCccEEEeecCCcc-cccccccCCCCCCEEeccCCCCCCcCCCCC-CCCCCcEEeccCCCCccccCcc-----------
Q 047214 489 APNLETYLLDYTNFA-CVPSSIQNFKYLSALSFEGCKSLRSFPSNF-RFVCPVTINFSSCVNLIEFPQI----------- 555 (658)
Q Consensus 489 l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~----------- 555 (658)
+++|++|++++|.+. .+|.+++.+++|++|++++|.....+|..+ .+++|+.|++++|...+.+|..
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence 555555555555443 344445555555555555543333344332 4455555555544332222211
Q ss_pred --------------------------------------------------------------cCCccEEEccccccc-cc
Q 047214 556 --------------------------------------------------------------SGKITRLYLGQSAIE-EV 572 (658)
Q Consensus 556 --------------------------------------------------------------~~~L~~L~l~~~~i~-~~ 572 (658)
.++|+.|++++|.++ .+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence 133445556655555 45
Q ss_pred cccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC----CCCCcccEEeccCCccccccCC
Q 047214 573 PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP----ALPLCLKSLDLRDCKMLQSLPE 643 (658)
Q Consensus 573 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~----~l~~~L~~L~l~~~~~l~~i~~ 643 (658)
|..++.++.|+.|++++|...+.+|..++.+++|+.|++++|..-+.+| .++. |++|++++|+..+.+|.
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~-L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM-LTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC-CSEEECCSSEEEEECCS
T ss_pred CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC-CCEEECcCCcccccCCC
Confidence 5555556666666666655555555555666666666666555443444 3455 66666666655555553
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.9e-23 Score=232.44 Aligned_cols=200 Identities=15% Similarity=0.178 Sum_probs=146.2
Q ss_pred ecCCCCCCcccccceEEecccCCCC------------------CCCCCC---CCCccEEEecCCCcc-cccccccCCCCc
Q 047214 413 LLPDGLDYLPKNLRYLHWDKYPLRT------------------LPSNFK---PENLVELNLHFSKVE-QLWEGKKEAFKL 470 (658)
Q Consensus 413 ~~p~~~~~l~~~L~~L~l~~~~l~~------------------lp~~~~---l~~L~~L~L~~~~i~-~l~~~~~~l~~L 470 (658)
.+|..+++++ +|++|+|++|.++. +|..+. +++|++|+|++|.+. .+|..++++++|
T Consensus 197 ~ip~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLT-KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCT-TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhccc-CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 3888899998 99999999999998 888764 899999999999865 678889999999
Q ss_pred cEEeccCCCccc--ccC--CCcC------CCccEEEeecCCcccccc--cccCCCCCCEEeccCCCCCCcCCCCCCCCCC
Q 047214 471 KSINLSHCRHFI--DMS--YPSA------PNLETYLLDYTNFACVPS--SIQNFKYLSALSFEGCKSLRSFPSNFRFVCP 538 (658)
Q Consensus 471 ~~L~l~~~~~~~--~~~--l~~l------~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 538 (658)
++|++++|..+. .+| ++.+ ++|++|++++|.+..+|. .+..+++|++|++++|.....+|....+++|
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L 355 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCC
Confidence 999999996344 477 6665 899999999999998988 8999999999999988433377744467777
Q ss_pred cEEeccCCCCccccCcc---cCC-ccEEEccccccccccccccCCC--CCCEEecCCCccchhhhhhhc-------CCCC
Q 047214 539 VTINFSSCVNLIEFPQI---SGK-ITRLYLGQSAIEEVPSSIECLT--DLEVLDLRDCKRLKRISTRFC-------KLRS 605 (658)
Q Consensus 539 ~~L~l~~~~~l~~~~~~---~~~-L~~L~l~~~~i~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~-------~l~~ 605 (658)
+.|++++|. +..+|.. ..+ |+.|++++|.++.+|..+..++ +|++|++++|.....+|..+. .+++
T Consensus 356 ~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~ 434 (636)
T 4eco_A 356 ASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGIN 434 (636)
T ss_dssp SEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCC
T ss_pred CEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCC
Confidence 777777763 3355543 234 6677777777776666554433 566666666654444444444 4445
Q ss_pred CcEEeccCC
Q 047214 606 LVDLFLHGC 614 (658)
Q Consensus 606 L~~L~l~~~ 614 (658)
|+.|++++|
T Consensus 435 L~~L~Ls~N 443 (636)
T 4eco_A 435 VSSINLSNN 443 (636)
T ss_dssp EEEEECCSS
T ss_pred CCEEECcCC
Confidence 555555554
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=5.1e-23 Score=234.42 Aligned_cols=295 Identities=19% Similarity=0.212 Sum_probs=210.9
Q ss_pred ceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCc-chhh--hc-c---------cCceecCCCCCC--ccccc
Q 047214 361 AIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGM-SIEE--QL-S---------DSKVLLPDGLDY--LPKNL 425 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~--~~-~---------~~~~~~p~~~~~--l~~~L 425 (658)
.++.+.+..+.+. ..++...+.++++|++|++++|.+.+. |..- .. . .-...+|..+.. ++ +|
T Consensus 319 ~L~~L~L~~n~l~-~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~-~L 396 (768)
T 3rgz_A 319 LLESLALSSNNFS-GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN-TL 396 (768)
T ss_dssp TCCEEECCSSEEE-EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTC-CC
T ss_pred CccEEECCCCccc-CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccC-Cc
Confidence 3444444433331 133444566677777777777766421 1110 00 0 002234555544 44 67
Q ss_pred ceEEecccCCC-CCCCCC-CCCCccEEEecCCCcc-cccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecC
Q 047214 426 RYLHWDKYPLR-TLPSNF-KPENLVELNLHFSKVE-QLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYT 500 (658)
Q Consensus 426 ~~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~ 500 (658)
++|++++|.+. .+|..+ .+++|++|++++|.+. .+|..+..+++|+.|++++|.....+| +..+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 77888777777 566655 7788888888888877 567778888888888888886555667 788888888888888
Q ss_pred Ccc-cccccccCCCCCCEEeccCCCCCCcCCCCC-CCCCCcEEeccCCCCccccCcc---cCCccEEEccccccc-cccc
Q 047214 501 NFA-CVPSSIQNFKYLSALSFEGCKSLRSFPSNF-RFVCPVTINFSSCVNLIEFPQI---SGKITRLYLGQSAIE-EVPS 574 (658)
Q Consensus 501 ~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~~~i~-~~~~ 574 (658)
.+. .+|..+..+++|++|++++|.....+|..+ .+++|+.|++++|...+.+|.. +++|+.|++++|.+. .+|.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 886 567778888888888888886555677654 7888999999888766666654 456778888888776 4443
Q ss_pred c----------------------------------------------------------------------ccCCCCCCE
Q 047214 575 S----------------------------------------------------------------------IECLTDLEV 584 (658)
Q Consensus 575 ~----------------------------------------------------------------------~~~l~~L~~ 584 (658)
. +..+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 2 334577889
Q ss_pred EecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC----CCCCcccEEeccCCccccccCC---CCCCccEEeccCCC
Q 047214 585 LDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP----ALPLCLKSLDLRDCKMLQSLPE---LPSCLEALDLTSCN 657 (658)
Q Consensus 585 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~----~l~~~L~~L~l~~~~~l~~i~~---~~~~L~~L~l~~~~ 657 (658)
|++++|...+.+|..++.+++|+.|++++|..-+.+| .+++ |++|++++|...+.+|. .+++|+.|++++|+
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~-L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG-LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT-CCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC-CCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 9999998777889999999999999999988666777 5788 99999999997778886 46789999999986
Q ss_pred C
Q 047214 658 M 658 (658)
Q Consensus 658 ~ 658 (658)
+
T Consensus 716 l 716 (768)
T 3rgz_A 716 L 716 (768)
T ss_dssp E
T ss_pred c
Confidence 4
No 18
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=2.8e-22 Score=213.51 Aligned_cols=276 Identities=16% Similarity=0.172 Sum_probs=149.8
Q ss_pred eeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcc--------cCceecCCCCCCcccccceEEeccc
Q 047214 362 IEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLS--------DSKVLLPDGLDYLPKNLRYLHWDKY 433 (658)
Q Consensus 362 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~~~~p~~~~~l~~~L~~L~l~~~ 433 (658)
++.+.+..+.+... + .+..+++|++|++++|.+.+.|++.... +.-..+| ++.++ +|++|++++|
T Consensus 44 L~~L~Ls~n~l~~~--~--~l~~l~~L~~L~Ls~n~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~-~L~~L~L~~N 116 (457)
T 3bz5_A 44 LTSLDCHNSSITDM--T--GIEKLTGLTKLICTSNNITTLDLSQNTNLTYLACDSNKLTNLD--VTPLT-KLTYLNCDTN 116 (457)
T ss_dssp CCEEECCSSCCCCC--T--TGGGCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCT-TCCEEECCSS
T ss_pred CCEEEccCCCcccC--h--hhcccCCCCEEEccCCcCCeEccccCCCCCEEECcCCCCceee--cCCCC-cCCEEECCCC
Confidence 44444444444322 1 4556666666666666664332111000 0001111 44444 5555555555
Q ss_pred CCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccCCCcCCCccEEEeecCCcccccccccCCC
Q 047214 434 PLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFACVPSSIQNFK 513 (658)
Q Consensus 434 ~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 513 (658)
.++.+| ...+++|++|++++|.++.++ +..+++|++|++++|..+..++++.+++|++|++++|.+..+| +..++
T Consensus 117 ~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~ 191 (457)
T 3bz5_A 117 KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNK 191 (457)
T ss_dssp CCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCT
T ss_pred cCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCC
Confidence 555554 225555555555555555542 4555566666666665444445556666666666666666654 55666
Q ss_pred CCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccC-cccCCccEEEccccccccccccccCCCCC----------
Q 047214 514 YLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFP-QISGKITRLYLGQSAIEEVPSSIECLTDL---------- 582 (658)
Q Consensus 514 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~~~i~~~~~~~~~l~~L---------- 582 (658)
+|+.|++++| .++.++ ...+++|+.|++++|. +..+| ..+++|+.|++++|.++.+|. ..+++|
T Consensus 192 ~L~~L~l~~N-~l~~~~-l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~--~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 192 LLNRLNCDTN-NITKLD-LNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDV--STLSKLTTLHCIQTDL 266 (457)
T ss_dssp TCCEEECCSS-CCSCCC-CTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCC--TTCTTCCEEECTTCCC
T ss_pred CCCEEECcCC-cCCeec-cccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCH--HHCCCCCEEeccCCCC
Confidence 6666666665 344442 3456667777776653 33344 124566677777777666553 233333
Q ss_pred CEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC------------CCCCcccEEeccCCccccccC-CCCCCcc
Q 047214 583 EVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP------------ALPLCLKSLDLRDCKMLQSLP-ELPSCLE 649 (658)
Q Consensus 583 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~------------~l~~~L~~L~l~~~~~l~~i~-~~~~~L~ 649 (658)
+.|++++|.....+| ++.+++|+.|++++|+.++.+| .+|+ |++|++++|. ++.++ ...++|+
T Consensus 267 ~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~-L~~L~L~~N~-l~~l~l~~l~~L~ 342 (457)
T 3bz5_A 267 LEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK-LVYLYLNNTE-LTELDVSHNTKLK 342 (457)
T ss_dssp SCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT-CCEEECTTCC-CSCCCCTTCTTCS
T ss_pred CEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhccc-CCEEECCCCc-ccccccccCCcCc
Confidence 344444444444444 3567778888887776555444 3455 6666666665 34444 2456788
Q ss_pred EEeccCCCC
Q 047214 650 ALDLTSCNM 658 (658)
Q Consensus 650 ~L~l~~~~~ 658 (658)
.|++++|++
T Consensus 343 ~L~l~~N~l 351 (457)
T 3bz5_A 343 SLSCVNAHI 351 (457)
T ss_dssp EEECCSSCC
T ss_pred EEECCCCCC
Confidence 888888764
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=2.4e-22 Score=223.49 Aligned_cols=259 Identities=17% Similarity=0.216 Sum_probs=175.9
Q ss_pred ceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC
Q 047214 361 AIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS 440 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~ 440 (658)
.++.+.+..+.+. .+....|.++++|++|++++|.+ ....|..+..++ +|++|++++|.+..+++
T Consensus 34 ~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i------------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~ 98 (606)
T 3t6q_A 34 STECLEFSFNVLP--TIQNTTFSRLINLTFLDLTRCQI------------YWIHEDTFQSQH-RLDTLVLTANPLIFMAE 98 (606)
T ss_dssp TCCEEECTTCCCS--EECTTTSTTCTTCSEEECTTCCC------------CEECTTTTTTCT-TCCEEECTTCCCSEECT
T ss_pred cCcEEEccCCccC--cCChhHhccCccceEEECCCCcc------------ceeChhhccCcc-ccCeeeCCCCcccccCh
Confidence 4566666655553 45677889999999999999998 345688888988 99999999999986644
Q ss_pred -CC-CCCCccEEEecCCCcccc-cccccCCCCccEEeccCCCccccc--C-CCcCCCccEEEeecCCccccc-ccccCCC
Q 047214 441 -NF-KPENLVELNLHFSKVEQL-WEGKKEAFKLKSINLSHCRHFIDM--S-YPSAPNLETYLLDYTNFACVP-SSIQNFK 513 (658)
Q Consensus 441 -~~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~--~-l~~l~~L~~L~l~~~~~~~~~-~~~~~l~ 513 (658)
.+ .+.+|++|++++|.+..+ |..+..+++|++|++++|. +..+ | +..+++|++|++++|.+..++ ..+..++
T Consensus 99 ~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 177 (606)
T 3t6q_A 99 TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ 177 (606)
T ss_dssp TTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT
T ss_pred hhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhc
Confidence 44 899999999999999987 5668899999999999985 4443 5 666999999999999887764 5678888
Q ss_pred CCC--EEeccCCCCCCcCCCCCCCCCCcEEeccCCC--------------------------------------------
Q 047214 514 YLS--ALSFEGCKSLRSFPSNFRFVCPVTINFSSCV-------------------------------------------- 547 (658)
Q Consensus 514 ~L~--~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~-------------------------------------------- 547 (658)
+|+ .|++++|......|..+....|+.|++++|.
T Consensus 178 ~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~ 257 (606)
T 3t6q_A 178 QATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257 (606)
T ss_dssp TCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEE
T ss_pred ccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCcee
Confidence 888 7888887433333333333333333333321
Q ss_pred -------CccccCc----ccCCccEEEccccccccccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcC
Q 047214 548 -------NLIEFPQ----ISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLN 616 (658)
Q Consensus 548 -------~l~~~~~----~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 616 (658)
.+..++. .+++|+.|++++|.++.+|..+..+++|++|++++|......|..+..+++|++|++++|..
T Consensus 258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 1122221 23466677777777777766666777777777777664444455566666666666666543
Q ss_pred CccCC-----CCCCcccEEeccCCc
Q 047214 617 LQSLP-----ALPLCLKSLDLRDCK 636 (658)
Q Consensus 617 l~~l~-----~l~~~L~~L~l~~~~ 636 (658)
...++ .+++ |++|++++|.
T Consensus 338 ~~~~~~~~~~~l~~-L~~L~l~~n~ 361 (606)
T 3t6q_A 338 RLELGTGCLENLEN-LRELDLSHDD 361 (606)
T ss_dssp CCBCCSSTTTTCTT-CCEEECCSSC
T ss_pred ccccchhhhhccCc-CCEEECCCCc
Confidence 32222 3455 5555555554
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=221.41 Aligned_cols=126 Identities=19% Similarity=0.224 Sum_probs=95.5
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCC
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLP 439 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp 439 (658)
..++.+.+..+.+. .++...|.++++|++|++++|.+. ...|..+..++ +|++|++++|.++.+|
T Consensus 21 ~~L~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~~l~-~L~~L~Ls~N~l~~lp 85 (520)
T 2z7x_B 21 QKTTILNISQNYIS--ELWTSDILSLSKLRILIISHNRIQ------------YLDISVFKFNQ-ELEYLDLSHNKLVKIS 85 (520)
T ss_dssp TTCSEEECCSSCCC--CCCHHHHTTCTTCCEEECCSSCCC------------EEEGGGGTTCT-TCCEEECCSSCCCEEE
T ss_pred ccccEEECCCCccc--ccChhhccccccccEEecCCCccC------------CcChHHhhccc-CCCEEecCCCceeecC
Confidence 45666666655543 355678899999999999999983 34577888888 9999999999999998
Q ss_pred CCCCCCCccEEEecCCCccc--ccccccCCCCccEEeccCCCcccccCCCcCCCc--cEEEeecCCc
Q 047214 440 SNFKPENLVELNLHFSKVEQ--LWEGKKEAFKLKSINLSHCRHFIDMSYPSAPNL--ETYLLDYTNF 502 (658)
Q Consensus 440 ~~~~l~~L~~L~L~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 502 (658)
.. .+.+|++|++++|.+.. +|..++.+++|++|++++|. +...++..+++| +.|++++|.+
T Consensus 86 ~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 86 CH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKSSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGGGGGGGTTSCEEEEEEEECTT
T ss_pred cc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchhhccccccceeeEEEeecccc
Confidence 88 89999999999999885 56788899999999998884 332224555555 6666665544
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=2.9e-22 Score=221.72 Aligned_cols=256 Identities=18% Similarity=0.227 Sum_probs=200.1
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCC
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLP 439 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp 439 (658)
..++.+.+..+.+ ..++...|..+++|++|++++|.+.+ ..|..++.++ +|++|+|++|.+..+|
T Consensus 75 ~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~l~-~L~~L~L~~n~l~~l~ 139 (597)
T 3oja_B 75 RQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRY------------LPPHVFQNVP-LLTVLVLERNDLSSLP 139 (597)
T ss_dssp CCCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCC------------CCTTTTTTCT-TCCEEECCSSCCCCCC
T ss_pred CCCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCC------------CCHHHHcCCC-CCCEEEeeCCCCCCCC
Confidence 3456666555444 34566688899999999999999843 3456678888 9999999999999999
Q ss_pred CCC--CCCCccEEEecCCCcccccc-cccCCCCccEEeccCCCcccccCCCcCCCccEEEeecCC---------------
Q 047214 440 SNF--KPENLVELNLHFSKVEQLWE-GKKEAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTN--------------- 501 (658)
Q Consensus 440 ~~~--~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~--------------- 501 (658)
+.. .+++|++|+|++|.+..+++ .+..+++|++|++++| .+..++++.+++|+.|++++|.
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~l 218 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDA 218 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEEC
T ss_pred HHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCchhheeec
Confidence 864 89999999999999987765 4889999999999998 4555555555555555555544
Q ss_pred ----cccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCc---ccCCccEEEccccccccccc
Q 047214 502 ----FACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEEVPS 574 (658)
Q Consensus 502 ----~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~~~~ 574 (658)
+..++..+ .++|+.|++++| .++..+....+++|+.|++++|......|. .+++|+.|++++|.+..+|.
T Consensus 219 s~n~l~~~~~~~--~~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 295 (597)
T 3oja_B 219 SHNSINVVRGPV--NVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 295 (597)
T ss_dssp CSSCCCEEECSC--CSCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC
T ss_pred cCCccccccccc--CCCCCEEECCCC-CCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc
Confidence 44433222 357889999887 566666666899999999999865444454 35688899999999999998
Q ss_pred cccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC--CCCCcccEEeccCCcc
Q 047214 575 SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP--ALPLCLKSLDLRDCKM 637 (658)
Q Consensus 575 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~l~~~L~~L~l~~~~~ 637 (658)
.+..+++|+.|++++|. +..+|..+..+++|+.|++++|. +..++ .+++ |+.|++++|+.
T Consensus 296 ~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~-L~~L~l~~N~~ 357 (597)
T 3oja_B 296 YGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHT-LKNLTLSHNDW 357 (597)
T ss_dssp SSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCCCTTCC-CSEEECCSSCE
T ss_pred ccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCC-CCCcChhhcCC-CCEEEeeCCCC
Confidence 88889999999999997 45788888899999999999987 55555 6888 99999999983
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.4e-22 Score=217.03 Aligned_cols=281 Identities=20% Similarity=0.202 Sum_probs=194.2
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceec-CCCCCCcccccceEEecccCCCCC
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLL-PDGLDYLPKNLRYLHWDKYPLRTL 438 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-p~~~~~l~~~L~~L~l~~~~l~~l 438 (658)
..++.+.+..+.+. .+....|.++++|++|++++|.+. ..+ |..+..++ +|++|++++|.+..+
T Consensus 30 ~~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~~~------------~~i~~~~~~~l~-~L~~L~Ls~n~l~~~ 94 (455)
T 3v47_A 30 AHVNYVDLSLNSIA--ELNETSFSRLQDLQFLKVEQQTPG------------LVIRNNTFRGLS-SLIILKLDYNQFLQL 94 (455)
T ss_dssp TTCCEEECCSSCCC--EECTTTTSSCTTCCEEECCCCSTT------------CEECTTTTTTCT-TCCEEECTTCTTCEE
T ss_pred CccCEEEecCCccC--cCChhHhccCccccEEECcCCccc------------ceECcccccccc-cCCEEeCCCCccCcc
Confidence 34566666555443 345667788888888888888762 223 45677777 888888888888765
Q ss_pred -CCCC-CCCCccEEEecCCCccc-cccc--ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccccc-ccc
Q 047214 439 -PSNF-KPENLVELNLHFSKVEQ-LWEG--KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVP-SSI 509 (658)
Q Consensus 439 -p~~~-~l~~L~~L~L~~~~i~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~-~~~ 509 (658)
|..+ .+++|++|++++|.+.. .|.. +..+++|++|++++|......| ++++++|++|++++|.+..++ ..+
T Consensus 95 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred ChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 4444 78888888888888874 3333 7778888888888885333334 677888888888887775543 223
Q ss_pred c----------------------------------CCCCCCEEeccCCCCCCcCCC------------------------
Q 047214 510 Q----------------------------------NFKYLSALSFEGCKSLRSFPS------------------------ 531 (658)
Q Consensus 510 ~----------------------------------~l~~L~~L~l~~~~~l~~~~~------------------------ 531 (658)
. .+++|++|++++|......|.
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred hccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence 2 235566666666532110000
Q ss_pred ----------------CCCCCCCcEEeccCCCCccccCc---ccCCccEEEccccccccccc-cccCCCCCCEEecCCCc
Q 047214 532 ----------------NFRFVCPVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEEVPS-SIECLTDLEVLDLRDCK 591 (658)
Q Consensus 532 ----------------~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~ 591 (658)
....++|+.|++++|......|. .+++|+.|++++|.+..++. .+..+++|++|++++|.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 00235677777777654444443 34678899999999987744 68889999999999998
Q ss_pred cchhhhhhhcCCCCCcEEeccCCcCCccC-C----CCCCcccEEeccCCccccccCC----CCCCccEEeccCCCC
Q 047214 592 RLKRISTRFCKLRSLVDLFLHGCLNLQSL-P----ALPLCLKSLDLRDCKMLQSLPE----LPSCLEALDLTSCNM 658 (658)
Q Consensus 592 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~l-~----~l~~~L~~L~l~~~~~l~~i~~----~~~~L~~L~l~~~~~ 658 (658)
.....|..+..+++|++|++++|. +..+ | .+++ |++|++++|. ++.+|. .+++|+.|++++|++
T Consensus 335 l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~-L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 335 LGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPN-LKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CCEECGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCTT-CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCcChhHhcCcccCCEEECCCCc-ccccChhhcccccc-ccEEECCCCc-cccCCHhHhccCCcccEEEccCCCc
Confidence 655557778899999999999986 3333 3 6788 9999999987 566664 467899999999875
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=4.5e-22 Score=213.50 Aligned_cols=211 Identities=19% Similarity=0.235 Sum_probs=95.8
Q ss_pred hcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccc
Q 047214 382 FTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLW 461 (658)
Q Consensus 382 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~ 461 (658)
+.++++|++|++++|.+.+ ++. +..++ +|++|++++|.++.+|+...+++|++|++++|.+..++
T Consensus 86 ~~~l~~L~~L~l~~n~l~~-------------~~~-~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~ 150 (466)
T 1o6v_A 86 LKNLTKLVDILMNNNQIAD-------------ITP-LANLT-NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 150 (466)
T ss_dssp GTTCTTCCEEECCSSCCCC-------------CGG-GTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG
T ss_pred hhccccCCEEECCCCcccc-------------Chh-hcCCC-CCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh
Confidence 4555555555555555422 222 44555 56666666665555555335555666666555554433
Q ss_pred c--------------------cccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCcccccccccCCCCCCEEec
Q 047214 462 E--------------------GKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSF 520 (658)
Q Consensus 462 ~--------------------~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l 520 (658)
. .+..+++|+.|++++|. +..++ +..+++|++|++++|.+..+++ +..+++|+.|++
T Consensus 151 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 228 (466)
T 1o6v_A 151 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSL 228 (466)
T ss_dssp GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEEC
T ss_pred hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEEC
Confidence 2 13334444555555442 33333 4444555555555544444332 344444555555
Q ss_pred cCCCCCCcCCCCCCCCCCcEEeccCCCCccccC--cccCCccEEEccccccccccccccCCCCCCEEecCCCccchhhhh
Q 047214 521 EGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFP--QISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRIST 598 (658)
Q Consensus 521 ~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 598 (658)
++| .+..++....+++|+.|++++|.. ...+ ..+++|+.|++++|.+..++. +..+++|+.|++++|.. ..++.
T Consensus 229 ~~n-~l~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l-~~~~~ 304 (466)
T 1o6v_A 229 NGN-QLKDIGTLASLTNLTDLDLANNQI-SNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQL-EDISP 304 (466)
T ss_dssp CSS-CCCCCGGGGGCTTCSEEECCSSCC-CCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC-SCCGG
T ss_pred CCC-CcccchhhhcCCCCCEEECCCCcc-ccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcc-cCchh
Confidence 444 233333333444555555554421 1111 122344445555444444433 44444444444444432 12221
Q ss_pred hhcCCCCCcEEeccCC
Q 047214 599 RFCKLRSLVDLFLHGC 614 (658)
Q Consensus 599 ~~~~l~~L~~L~l~~~ 614 (658)
++.+++|+.|++++|
T Consensus 305 -~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 305 -ISNLKNLTYLTLYFN 319 (466)
T ss_dssp -GGGCTTCSEEECCSS
T ss_pred -hcCCCCCCEEECcCC
Confidence 334444444444444
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=1.9e-22 Score=216.17 Aligned_cols=258 Identities=19% Similarity=0.218 Sum_probs=203.0
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCC-CCCC-CC-CCCCccEEEecCCCcccc-c
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLR-TLPS-NF-KPENLVELNLHFSKVEQL-W 461 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~-~lp~-~~-~l~~L~~L~L~~~~i~~l-~ 461 (658)
++|++|++++|.+ ....|..+..++ +|++|++++|.+. .+|+ .+ .+++|++|+|++|.+..+ |
T Consensus 30 ~~l~~L~Ls~n~i------------~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~ 96 (455)
T 3v47_A 30 AHVNYVDLSLNSI------------AELNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96 (455)
T ss_dssp TTCCEEECCSSCC------------CEECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT
T ss_pred CccCEEEecCCcc------------CcCChhHhccCc-cccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh
Confidence 7899999999998 344688899998 9999999999986 5654 34 899999999999999876 6
Q ss_pred ccccCCCCccEEeccCCCcccccC----CCcCCCccEEEeecCCcccc-ccc-ccCCCCCCEEeccCCCCCCcCCCCC--
Q 047214 462 EGKKEAFKLKSINLSHCRHFIDMS----YPSAPNLETYLLDYTNFACV-PSS-IQNFKYLSALSFEGCKSLRSFPSNF-- 533 (658)
Q Consensus 462 ~~~~~l~~L~~L~l~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~-~~~-~~~l~~L~~L~l~~~~~l~~~~~~~-- 533 (658)
..+..+++|++|++++|......+ ++.+++|++|++++|.+..+ |.. +.++++|++|++++|......+..+
T Consensus 97 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 176 (455)
T 3v47_A 97 GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGG
T ss_pred hhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhc
Confidence 679999999999999996433222 88999999999999999887 444 8899999999999985333323211
Q ss_pred ---------------------------------CCCCCcEEeccCCCCccccCc--------------------------
Q 047214 534 ---------------------------------RFVCPVTINFSSCVNLIEFPQ-------------------------- 554 (658)
Q Consensus 534 ---------------------------------~~~~L~~L~l~~~~~l~~~~~-------------------------- 554 (658)
.+++|+.|++++|......|.
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 256 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc
Confidence 236788888887743221110
Q ss_pred ----------------ccCCccEEEccccccccc-cccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCC
Q 047214 555 ----------------ISGKITRLYLGQSAIEEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNL 617 (658)
Q Consensus 555 ----------------~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l 617 (658)
...+|+.|++++|.+..+ |..+..+++|++|++++|......|..+.++++|++|++++|. +
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l 335 (455)
T 3v47_A 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-L 335 (455)
T ss_dssp TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-C
T ss_pred chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-c
Confidence 114788999999988865 5568899999999999998666667789999999999999986 4
Q ss_pred ccCC-----CCCCcccEEeccCCccccccCC---CCCCccEEeccCCCC
Q 047214 618 QSLP-----ALPLCLKSLDLRDCKMLQSLPE---LPSCLEALDLTSCNM 658 (658)
Q Consensus 618 ~~l~-----~l~~~L~~L~l~~~~~l~~i~~---~~~~L~~L~l~~~~~ 658 (658)
+.++ .+++ |++|++++|......|. .+++|++|++++|++
T Consensus 336 ~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 383 (455)
T 3v47_A 336 GSIDSRMFENLDK-LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL 383 (455)
T ss_dssp CEECGGGGTTCTT-CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCcChhHhcCccc-CCEEECCCCcccccChhhccccccccEEECCCCcc
Confidence 4442 5888 99999999984433354 567899999999975
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=3.7e-22 Score=222.02 Aligned_cols=101 Identities=19% Similarity=0.256 Sum_probs=67.1
Q ss_pred CCccEEEccccccccccccccCCCCCCEEecCCCccchhhh-hhhcCCCCCcEEeccCCcCCccCC----CCCCcccEEe
Q 047214 557 GKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRIS-TRFCKLRSLVDLFLHGCLNLQSLP----ALPLCLKSLD 631 (658)
Q Consensus 557 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~----~l~~~L~~L~ 631 (658)
++|+.|++++|.+..+|..+..+++|++|++++|......| ..+..+++|+.|++++|......| .+++ |++|+
T Consensus 376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~ 454 (606)
T 3vq2_A 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTLK 454 (606)
T ss_dssp SCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-CCEEE
T ss_pred CcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC-CCEEE
Confidence 45556666666666666566667777777777776544444 456777788888887776333333 5677 88888
Q ss_pred ccCCccccc-cCC---CCCCccEEeccCCCC
Q 047214 632 LRDCKMLQS-LPE---LPSCLEALDLTSCNM 658 (658)
Q Consensus 632 l~~~~~l~~-i~~---~~~~L~~L~l~~~~~ 658 (658)
+++|..... +|. .+++|+.|++++|.+
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 485 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcC
Confidence 888874442 454 457788888888864
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.3e-22 Score=222.99 Aligned_cols=130 Identities=18% Similarity=0.263 Sum_probs=92.9
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCC
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLP 439 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp 439 (658)
..++.+.+..+.+. .+....|.++++|++|++++|.+. ...|..+..++ +|++|++++|.+..+|
T Consensus 26 ~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~------------~~~~~~~~~l~-~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 26 AAMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRIN------------TIEGDAFYSLG-SLEHLDLSDNHLSSLS 90 (549)
T ss_dssp TTCCEEECCSSCCC--EECSSTTSSCTTCCEEECTTSCCC------------EECTTTTTTCT-TCCEEECTTSCCCSCC
T ss_pred CCccEEECcCCccC--ccChhhhhcCCcccEEECCCCCcC------------ccChhhccccc-cCCEEECCCCccCccC
Confidence 34666666555443 344567788888888888888873 33456777777 8888888888888777
Q ss_pred CC-C-CCCCccEEEecCCCccc--ccccccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccc
Q 047214 440 SN-F-KPENLVELNLHFSKVEQ--LWEGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFAC 504 (658)
Q Consensus 440 ~~-~-~l~~L~~L~L~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~ 504 (658)
+. + .+++|++|++++|.+.. .|..++.+++|++|++++|..+..+| ++++++|++|++++|.+..
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 65 3 77888888888888774 35567778888888888776555554 6777777777777766654
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=1.2e-21 Score=208.69 Aligned_cols=250 Identities=19% Similarity=0.201 Sum_probs=186.2
Q ss_pred ceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC
Q 047214 361 AIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS 440 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~ 440 (658)
.++.+.+..+.+... .+.++++|++|++++|.+. .+| ++.++ +|++|++++|.++.+|
T Consensus 86 ~L~~L~Ls~N~l~~~-----~~~~l~~L~~L~L~~N~l~-------------~l~--~~~l~-~L~~L~l~~N~l~~l~- 143 (457)
T 3bz5_A 86 NLTYLACDSNKLTNL-----DVTPLTKLTYLNCDTNKLT-------------KLD--VSQNP-LLTYLNCARNTLTEID- 143 (457)
T ss_dssp TCSEEECCSSCCSCC-----CCTTCTTCCEEECCSSCCS-------------CCC--CTTCT-TCCEEECTTSCCSCCC-
T ss_pred CCCEEECcCCCCcee-----ecCCCCcCCEEECCCCcCC-------------eec--CCCCC-cCCEEECCCCccceec-
Confidence 344444444443332 1556666777777766652 233 77787 9999999999999885
Q ss_pred CCCCCCccEEEecCC-CcccccccccCCCCccEEeccCCCcccccCCCcCCCccEEEeecCCcccccccccCCCCCCEEe
Q 047214 441 NFKPENLVELNLHFS-KVEQLWEGKKEAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFACVPSSIQNFKYLSALS 519 (658)
Q Consensus 441 ~~~l~~L~~L~L~~~-~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 519 (658)
...+++|++|++++| .+..+ .+..+++|++|++++| .+..+|++.+++|+.|++++|.+..+ .+..+++|++|+
T Consensus 144 l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~~l~l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~ 218 (457)
T 3bz5_A 144 VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KITELDVSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLD 218 (457)
T ss_dssp CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCCCCCCTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEE
T ss_pred cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccceeccccCCCCCEEECcCCcCCee--ccccCCCCCEEE
Confidence 448999999999999 45555 4788999999999999 56777889999999999999999887 388999999999
Q ss_pred ccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEccccccccccc---------cccCCCCCCEEecCCC
Q 047214 520 FEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPS---------SIECLTDLEVLDLRDC 590 (658)
Q Consensus 520 l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~---------~~~~l~~L~~L~l~~~ 590 (658)
+++| .++.+| ...+++|+.|++++|..-...+..+++|+.|+++.+.+..+.. .++.+++|+.|++++|
T Consensus 219 Ls~N-~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 219 CSSN-KLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN 296 (457)
T ss_dssp CCSS-CCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTC
T ss_pred CcCC-cccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCC
Confidence 9998 677787 6689999999999985333223456667666665555543321 1467899999999999
Q ss_pred ccchhhhhh--------hcCCCCCcEEeccCCcCCccCC--CCCCcccEEeccCCccccccC
Q 047214 591 KRLKRISTR--------FCKLRSLVDLFLHGCLNLQSLP--ALPLCLKSLDLRDCKMLQSLP 642 (658)
Q Consensus 591 ~~~~~~~~~--------~~~l~~L~~L~l~~~~~l~~l~--~l~~~L~~L~l~~~~~l~~i~ 642 (658)
...+.+|.. ++++++|+.|++++|. ++.++ .+++ |+.|++++|. +..++
T Consensus 297 ~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l~l~~l~~-L~~L~l~~N~-l~~l~ 355 (457)
T 3bz5_A 297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTELDVSHNTK-LKSLSCVNAH-IQDFS 355 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCCCCTTCTT-CSEEECCSSC-CCBCT
T ss_pred cccceeccCCCcceEechhhcccCCEEECCCCc-ccccccccCCc-CcEEECCCCC-CCCcc
Confidence 877666642 4566788888888765 44344 7888 9999999987 44444
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.4e-21 Score=199.90 Aligned_cols=251 Identities=14% Similarity=0.170 Sum_probs=181.5
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCC-CCCC-CCCCccEEEecCCCccccccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTL-PSNF-KPENLVELNLHFSKVEQLWEG 463 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~~~i~~l~~~ 463 (658)
++|++|++++|.+.+ ..+..+..++ +|++|++++|.+..+ |..+ .+++|++|++++|.+..+|..
T Consensus 52 ~~l~~L~L~~n~i~~------------~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~ 118 (330)
T 1xku_A 52 PDTALLDLQNNKITE------------IKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK 118 (330)
T ss_dssp TTCCEEECCSSCCCC------------BCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSS
T ss_pred CCCeEEECCCCcCCE------------eChhhhccCC-CCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChh
Confidence 678888888888732 2344677777 888888888888877 4445 788888888888888888776
Q ss_pred ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccc---ccccccCCCCCCEEeccCCCCCCcCCCCCCCCC
Q 047214 464 KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFAC---VPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVC 537 (658)
Q Consensus 464 ~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 537 (658)
+. ++|++|++++|. +..++ +..+++|++|++++|.+.. .+..+..+++|++|++++| .++.+|.... ++
T Consensus 119 ~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~~-~~ 193 (330)
T 1xku_A 119 MP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP-PS 193 (330)
T ss_dssp CC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSCC-TT
T ss_pred hc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCcccc-cc
Confidence 54 688888888884 44555 7888888888888877753 3456788888888888887 5666766543 78
Q ss_pred CcEEeccCCCCccccCc---ccCCccEEEccccccccccc-cccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccC
Q 047214 538 PVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHG 613 (658)
Q Consensus 538 L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 613 (658)
|+.|++++|......+. ..++|+.|++++|.+..++. .+..+++|++|++++|. +..+|..+..+++|+.|++++
T Consensus 194 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp CSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCC
Confidence 88888888753322232 34678888888888887765 57788888999998886 457777788888889998888
Q ss_pred CcCCccCC-----------CCCCcccEEeccCCcccc-ccC-C---CCCCccEEeccCCC
Q 047214 614 CLNLQSLP-----------ALPLCLKSLDLRDCKMLQ-SLP-E---LPSCLEALDLTSCN 657 (658)
Q Consensus 614 ~~~l~~l~-----------~l~~~L~~L~l~~~~~l~-~i~-~---~~~~L~~L~l~~~~ 657 (658)
|+ ++.++ ..+. ++.|++++|+... .++ . ...+|+.++|++|+
T Consensus 273 N~-i~~~~~~~f~~~~~~~~~~~-l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 273 NN-ISAIGSNDFCPPGYNTKKAS-YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SC-CCCCCTTSSSCSSCCTTSCC-CSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred Cc-CCccChhhcCCccccccccc-ccceEeecCcccccccCccccccccceeEEEecccC
Confidence 65 55544 1355 8888888888422 222 2 34568888888875
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=7.7e-22 Score=211.71 Aligned_cols=268 Identities=18% Similarity=0.211 Sum_probs=171.4
Q ss_pred ceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC
Q 047214 361 AIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS 440 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~ 440 (658)
.++.+.+....+... ..+..+++|++|++++|.+.+ +|. +..++ +|++|++++|.+..+++
T Consensus 47 ~l~~L~l~~~~i~~l----~~~~~l~~L~~L~Ls~n~l~~-------------~~~-~~~l~-~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 47 QVTTLQADRLGIKSI----DGVEYLNNLTQINFSNNQLTD-------------ITP-LKNLT-KLVDILMNNNQIADITP 107 (466)
T ss_dssp TCCEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCC-------------CGG-GTTCT-TCCEEECCSSCCCCCGG
T ss_pred cccEEecCCCCCccC----cchhhhcCCCEEECCCCccCC-------------chh-hhccc-cCCEEECCCCccccChh
Confidence 456666655554332 247789999999999999843 344 77887 99999999999999988
Q ss_pred CCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCcccccccccCCCCCCEEe
Q 047214 441 NFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALS 519 (658)
Q Consensus 441 ~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 519 (658)
...+++|++|++++|.+..++. +..+++|++|++++|. +..++ ++.+++|++|++. +.+..+++ +..+++|+.|+
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~ 183 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLD 183 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEE
T ss_pred hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEE
Confidence 5599999999999999998876 8899999999999984 55555 5556555555554 22322322 44455555555
Q ss_pred ccCCCCCCcCCCCCC----------------------CCCCcEEeccCCCCccccCc--ccCCccEEEcccccccccccc
Q 047214 520 FEGCKSLRSFPSNFR----------------------FVCPVTINFSSCVNLIEFPQ--ISGKITRLYLGQSAIEEVPSS 575 (658)
Q Consensus 520 l~~~~~l~~~~~~~~----------------------~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~ 575 (658)
+++| .+..++.... +++|+.|++++|. +..++. .+++|+.|++++|.+..++.
T Consensus 184 l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 184 ISSN-KVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CcCC-cCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccccchh-
Confidence 5544 2333333334 4455555555442 222221 23456666666666665544
Q ss_pred ccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC---CCCCcccEEeccCCccccccC-CCCCCccEE
Q 047214 576 IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP---ALPLCLKSLDLRDCKMLQSLP-ELPSCLEAL 651 (658)
Q Consensus 576 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~---~l~~~L~~L~l~~~~~l~~i~-~~~~~L~~L 651 (658)
+..+++|+.|++++|... .++. +..+++|+.|++++|. +..++ .+++ |++|++++|......| ..+++|+.|
T Consensus 261 ~~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~l~~L~~L 336 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQIS-NISP-LAGLTALTNLELNENQ-LEDISPISNLKN-LTYLTLYFNNISDISPVSSLTKLQRL 336 (466)
T ss_dssp GTTCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSC-CSCCGGGGGCTT-CSEEECCSSCCSCCGGGGGCTTCCEE
T ss_pred hhcCCCCCEEECCCCccC-cccc-ccCCCccCeEEcCCCc-ccCchhhcCCCC-CCEEECcCCcCCCchhhccCccCCEe
Confidence 556666666666666532 2333 5666777777777654 33333 5666 7777777776332222 256678888
Q ss_pred eccCCCC
Q 047214 652 DLTSCNM 658 (658)
Q Consensus 652 ~l~~~~~ 658 (658)
++++|++
T Consensus 337 ~l~~n~l 343 (466)
T 1o6v_A 337 FFYNNKV 343 (466)
T ss_dssp ECCSSCC
T ss_pred ECCCCcc
Confidence 8887764
No 30
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.7e-22 Score=205.89 Aligned_cols=208 Identities=23% Similarity=0.358 Sum_probs=131.5
Q ss_pred ccceEEecccCCCCCCCCC-CCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecC
Q 047214 424 NLRYLHWDKYPLRTLPSNF-KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYT 500 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~ 500 (658)
++++|++++|.++.+|..+ .+++|++|+|++|.+..+|..+..+++|++|++++|. +..+| ++.+++|++|++++|
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCC
Confidence 7888888888888888776 7888888888888888888778888888888888873 44666 777777777777773
Q ss_pred -CcccccccccC---------CCCCCEEeccCCCCCCcCCCCC-CCCCCcEEeccCCCCccccCcccCCccEEEcccccc
Q 047214 501 -NFACVPSSIQN---------FKYLSALSFEGCKSLRSFPSNF-RFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAI 569 (658)
Q Consensus 501 -~~~~~~~~~~~---------l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i 569 (658)
....+|..+.. +++|++|++++| .++.+|..+ ++++|+.|+++ +|.+
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~---------------------~N~l 218 (328)
T 4fcg_A 161 PELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIR---------------------NSPL 218 (328)
T ss_dssp TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEE---------------------SSCC
T ss_pred CCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEcc---------------------CCCC
Confidence 44556655443 666777777665 444555432 44555555554 4445
Q ss_pred ccccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC----CCCCcccEEeccCCccccccCC--
Q 047214 570 EEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP----ALPLCLKSLDLRDCKMLQSLPE-- 643 (658)
Q Consensus 570 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~----~l~~~L~~L~l~~~~~l~~i~~-- 643 (658)
..+|..+..+++|++|++++|.....+|..++.+++|+.|++++|+.++.+| .+++ |++|++++|+.++.+|.
T Consensus 219 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~-L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ-LEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp CCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT-CCEEECTTCTTCCCCCGGG
T ss_pred CcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC-CCEEeCCCCCchhhccHHH
Confidence 5555555555555555555555555555555555555555555555555554 3455 55555555555555554
Q ss_pred -CCCCccEEeccC
Q 047214 644 -LPSCLEALDLTS 655 (658)
Q Consensus 644 -~~~~L~~L~l~~ 655 (658)
.+++|+.+++..
T Consensus 298 ~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 298 AQLPANCIILVPP 310 (328)
T ss_dssp GGSCTTCEEECCG
T ss_pred hhccCceEEeCCH
Confidence 334455554443
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=2.9e-22 Score=213.16 Aligned_cols=197 Identities=19% Similarity=0.232 Sum_probs=138.4
Q ss_pred cccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCC
Q 047214 423 KNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTN 501 (658)
Q Consensus 423 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~ 501 (658)
++|++|++++|.++.+|.. +.+|++|++++|.+..+|.. .++|++|++++| .+..+| ++.+++|++|++++|.
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n-~l~~lp~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNN-QLEKLPELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCC-CCCCCcccCCCCCCCEEECCCCc
Confidence 3666666666666666643 35677777777766655432 257888888888 455677 8888888999988888
Q ss_pred cccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEccccccccccccccCCCC
Q 047214 502 FACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSIECLTD 581 (658)
Q Consensus 502 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~ 581 (658)
+..+|..+ ++|++|++++| .+..+|...++++|+.|++++|. +..+|..+++|+.|++++|.+..+|. +..+++
T Consensus 165 l~~lp~~~---~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~ 238 (454)
T 1jl5_A 165 LKKLPDLP---PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNILEELPE-LQNLPF 238 (454)
T ss_dssp CSCCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTT
T ss_pred CcccCCCc---ccccEEECcCC-cCCcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCcCCcccc-cCCCCC
Confidence 88777543 47888888887 56677776688999999998874 55677777889999999998888885 788899
Q ss_pred CCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCCCCCCcccEEeccCCc
Q 047214 582 LEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLPALPLCLKSLDLRDCK 636 (658)
Q Consensus 582 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~l~~~L~~L~l~~~~ 636 (658)
|++|++++|.. ..+|. .+++|+.|++++|. +..+|..+.+|++|++++|.
T Consensus 239 L~~L~l~~N~l-~~l~~---~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 239 LTTIYADNNLL-KTLPD---LPPSLEALNVRDNY-LTDLPELPQSLTFLDVSENI 288 (454)
T ss_dssp CCEEECCSSCC-SSCCS---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred CCEEECCCCcC-Ccccc---cccccCEEECCCCc-ccccCcccCcCCEEECcCCc
Confidence 99999988863 33443 23566666666654 44444332225555555554
No 32
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=1.1e-21 Score=218.14 Aligned_cols=129 Identities=17% Similarity=0.174 Sum_probs=70.6
Q ss_pred CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcC-CC-CCCCCCCcEEeccCCCCccccCc----ccCCc
Q 047214 486 YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSF-PS-NFRFVCPVTINFSSCVNLIEFPQ----ISGKI 559 (658)
Q Consensus 486 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~~~~L~~L~l~~~~~l~~~~~----~~~~L 559 (658)
++.+++|++|++++|.+..+|..+..+++|++|++++| .+..+ |. ...+++|+.|++++|.....+|. .+++|
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence 55566677777777766666666666777777777766 33333 21 22556666666666543323322 23455
Q ss_pred cEEEccccccccc---cccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCc
Q 047214 560 TRLYLGQSAIEEV---PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCL 615 (658)
Q Consensus 560 ~~L~l~~~~i~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 615 (658)
+.|++++|.+..+ +..+..+++|++|++++|......|..+..+++|++|++++|.
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 5666666555544 2335555556666665555433334444555555555555443
No 33
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.88 E-value=4.1e-21 Score=204.32 Aligned_cols=218 Identities=20% Similarity=0.226 Sum_probs=114.5
Q ss_pred ccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCc
Q 047214 424 NLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNF 502 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 502 (658)
+|++|++++|.++.+|....+.+|++|++++|.++.+|... .+|++|++++| .+..+| ++.+++|++|++++|.+
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSSCC
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCccccCCCCCCEEECCCCcC
Confidence 55555555555555553225555555555555555544322 35555555555 333344 55555555555555555
Q ss_pred ccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEccccccccccccc------
Q 047214 503 ACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSI------ 576 (658)
Q Consensus 503 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~------ 576 (658)
..+|... ++|++|++++| .+..+|....+++|+.|++++| .+..+|..+.+|+.|++++|.+..+|...
T Consensus 208 ~~l~~~~---~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L 282 (454)
T 1jl5_A 208 KKLPDLP---LSLESIVAGNN-ILEELPELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFL 282 (454)
T ss_dssp SSCCCCC---TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEE
T ss_pred CcCCCCc---CcccEEECcCC-cCCcccccCCCCCCCEEECCCC-cCCcccccccccCEEECCCCcccccCcccCcCCEE
Confidence 4444321 34555555554 3334444334555555555543 23334444444555555554444444321
Q ss_pred -----------cCCCCCCEEecCCCccchhhhhhhcCC-CCCcEEeccCCcCCccCCC-CCCcccEEeccCCccccccCC
Q 047214 577 -----------ECLTDLEVLDLRDCKRLKRISTRFCKL-RSLVDLFLHGCLNLQSLPA-LPLCLKSLDLRDCKMLQSLPE 643 (658)
Q Consensus 577 -----------~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~l~~-l~~~L~~L~l~~~~~l~~i~~ 643 (658)
...++|++|++++|... .++ .+ ++|+.|++++|. +..+|. +++ |++|++++|. ++.+|.
T Consensus 283 ~ls~N~l~~l~~~~~~L~~L~l~~N~l~-~i~----~~~~~L~~L~Ls~N~-l~~lp~~~~~-L~~L~L~~N~-l~~lp~ 354 (454)
T 1jl5_A 283 DVSENIFSGLSELPPNLYYLNASSNEIR-SLC----DLPPSLEELNVSNNK-LIELPALPPR-LERLIASFNH-LAEVPE 354 (454)
T ss_dssp ECCSSCCSEESCCCTTCCEEECCSSCCS-EEC----CCCTTCCEEECCSSC-CSCCCCCCTT-CCEEECCSSC-CSCCCC
T ss_pred ECcCCccCcccCcCCcCCEEECcCCcCC-ccc----CCcCcCCEEECCCCc-cccccccCCc-CCEEECCCCc-cccccc
Confidence 01234555555554421 111 22 477777777754 555664 455 8888888776 567777
Q ss_pred CCCCccEEeccCCCC
Q 047214 644 LPSCLEALDLTSCNM 658 (658)
Q Consensus 644 ~~~~L~~L~l~~~~~ 658 (658)
.+++|++|++++|++
T Consensus 355 ~l~~L~~L~L~~N~l 369 (454)
T 1jl5_A 355 LPQNLKQLHVEYNPL 369 (454)
T ss_dssp CCTTCCEEECCSSCC
T ss_pred hhhhccEEECCCCCC
Confidence 677788888888764
No 34
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=3e-21 Score=211.65 Aligned_cols=252 Identities=21% Similarity=0.262 Sum_probs=204.4
Q ss_pred eeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC
Q 047214 362 IEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN 441 (658)
Q Consensus 362 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~ 441 (658)
++.+.+..+.+. .++.... ++|++|++++|.+. .+|. .++ +|++|+|++|.++.+|.
T Consensus 42 l~~L~ls~n~L~--~lp~~l~---~~L~~L~L~~N~l~-------------~lp~---~l~-~L~~L~Ls~N~l~~lp~- 98 (622)
T 3g06_A 42 NAVLNVGESGLT--TLPDCLP---AHITTLVIPDNNLT-------------SLPA---LPP-ELRTLEVSGNQLTSLPV- 98 (622)
T ss_dssp CCEEECCSSCCS--CCCSCCC---TTCSEEEECSCCCS-------------CCCC---CCT-TCCEEEECSCCCSCCCC-
T ss_pred CcEEEecCCCcC--ccChhhC---CCCcEEEecCCCCC-------------CCCC---cCC-CCCEEEcCCCcCCcCCC-
Confidence 455655555554 3333222 79999999999983 3555 334 99999999999999998
Q ss_pred CCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccCCCcCCCccEEEeecCCcccccccccCCCCCCEEecc
Q 047214 442 FKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFE 521 (658)
Q Consensus 442 ~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 521 (658)
.+++|++|++++|.++.+|. .+.+|+.|++++| .+..+|- .+++|++|++++|.+..+|. .+++|+.|+++
T Consensus 99 -~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~-~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~ 169 (622)
T 3g06_A 99 -LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN-QLTSLPV-LPPGLQELSVSDNQLASLPA---LPSELCKLWAY 169 (622)
T ss_dssp -CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS-CCSCCCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred -CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC-CCCcCCC-CCCCCCEEECcCCcCCCcCC---ccCCCCEEECC
Confidence 78999999999999999887 6789999999999 5667771 24899999999999988875 35689999999
Q ss_pred CCCCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEccccccccccccccCCCCCCEEecCCCccchhhhhhhc
Q 047214 522 GCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFC 601 (658)
Q Consensus 522 ~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 601 (658)
+| .++.+| ..+++|+.|++++|. +..+|..+++|+.|++++|.++.+|. .+++|++|++++|. +..+| .
T Consensus 170 ~N-~l~~l~--~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~-L~~lp---~ 238 (622)
T 3g06_A 170 NN-QLTSLP--MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNR-LTSLP---V 238 (622)
T ss_dssp SS-CCSCCC--CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSC-CSCCC---C
T ss_pred CC-CCCCCc--ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCCcccccCC---CCCCCCEEEccCCc-cCcCC---C
Confidence 87 677788 457899999999874 67788888999999999999998886 36899999999986 45566 5
Q ss_pred CCCCCcEEeccCCcCCccCCCCCCcccEEeccCCccccccCC---CCCCccEEeccCCCC
Q 047214 602 KLRSLVDLFLHGCLNLQSLPALPLCLKSLDLRDCKMLQSLPE---LPSCLEALDLTSCNM 658 (658)
Q Consensus 602 ~l~~L~~L~l~~~~~l~~l~~l~~~L~~L~l~~~~~l~~i~~---~~~~L~~L~l~~~~~ 658 (658)
.+++|+.|++++| .++.+|..+.+|++|++++|. ++.+|. .+++|+.|+|++|++
T Consensus 239 ~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 239 LPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL 296 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCC
T ss_pred CCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCC
Confidence 6789999999997 477888543339999999997 668885 568899999999975
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1.4e-21 Score=214.88 Aligned_cols=126 Identities=21% Similarity=0.308 Sum_probs=99.9
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCC
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLP 439 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp 439 (658)
..++.+.+..+.+. .++...|.++++|++|++++|.+ ....|..+..++ +|++|++++|.++.+|
T Consensus 52 ~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l------------~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp 116 (562)
T 3a79_B 52 PRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSHNRI------------RSLDFHVFLFNQ-DLEYLDVSHNRLQNIS 116 (562)
T ss_dssp TTCCEEECCSSCCC--CCCGGGTTTCTTCCEEECCSCCC------------CEECTTTTTTCT-TCCEEECTTSCCCEEC
T ss_pred CCcCEEECCCCCcc--ccChhhhccCCCccEEECCCCCC------------CcCCHHHhCCCC-CCCEEECCCCcCCccC
Confidence 45666666655553 45667899999999999999998 334577888888 9999999999999999
Q ss_pred CCCCCCCccEEEecCCCccccc--ccccCCCCccEEeccCCCcccccCCCcCCCc--cEEEeecCCc
Q 047214 440 SNFKPENLVELNLHFSKVEQLW--EGKKEAFKLKSINLSHCRHFIDMSYPSAPNL--ETYLLDYTNF 502 (658)
Q Consensus 440 ~~~~l~~L~~L~L~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 502 (658)
.. .+.+|++|++++|.+..+| ..+.++++|++|++++|. +...++..+++| ++|++++|.+
T Consensus 117 ~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 117 CC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTTTGGGTTSCEEEEEEEESSC
T ss_pred cc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCchhhhhhceeeEEEeecccc
Confidence 88 8999999999999998765 679999999999999984 333335555555 7777777655
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=2.9e-21 Score=197.41 Aligned_cols=254 Identities=15% Similarity=0.163 Sum_probs=204.7
Q ss_pred CCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecCCCcccc-
Q 047214 384 NMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQL- 460 (658)
Q Consensus 384 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l- 460 (658)
+..++++++++++.+ ..+|..+. ..+++|++++|.++.+|.. + .+++|++|+|++|.+..+
T Consensus 29 c~c~l~~l~~~~~~l-------------~~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (330)
T 1xku_A 29 CQCHLRVVQCSDLGL-------------EKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92 (330)
T ss_dssp CEEETTEEECTTSCC-------------CSCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC
T ss_pred CcCCCeEEEecCCCc-------------cccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC
Confidence 445789999999886 34665543 3899999999999998874 4 899999999999999987
Q ss_pred cccccCCCCccEEeccCCCcccccCCCcCCCccEEEeecCCcccccc-cccCCCCCCEEeccCCCCCC--cCCCC-CCCC
Q 047214 461 WEGKKEAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFACVPS-SIQNFKYLSALSFEGCKSLR--SFPSN-FRFV 536 (658)
Q Consensus 461 ~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~--~~~~~-~~~~ 536 (658)
|..+..+++|++|++++| .+..+|-.-.++|++|++++|.+..++. .+..+++|++|++++|.... ..+.. .+++
T Consensus 93 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~ 171 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 171 (330)
T ss_dssp TTTTTTCTTCCEEECCSS-CCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred HHHhcCCCCCCEEECCCC-cCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence 677999999999999999 5667772333899999999999988764 58899999999999884321 22333 3789
Q ss_pred CCcEEeccCCCCccccCc-ccCCccEEEccccccccc-cccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCC
Q 047214 537 CPVTINFSSCVNLIEFPQ-ISGKITRLYLGQSAIEEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGC 614 (658)
Q Consensus 537 ~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 614 (658)
+|+.|++++|. +..+|. .+++|+.|++++|.++.+ |..+..+++|++|++++|......+..+..+++|++|++++|
T Consensus 172 ~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 172 KLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250 (330)
T ss_dssp TCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS
T ss_pred CcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC
Confidence 99999999874 555664 347899999999999977 456899999999999999865555567889999999999998
Q ss_pred cCCccCC----CCCCcccEEeccCCccccccCC-C---------CCCccEEeccCCCC
Q 047214 615 LNLQSLP----ALPLCLKSLDLRDCKMLQSLPE-L---------PSCLEALDLTSCNM 658 (658)
Q Consensus 615 ~~l~~l~----~l~~~L~~L~l~~~~~l~~i~~-~---------~~~L~~L~l~~~~~ 658 (658)
. +..+| .+++ |++|++++|. ++.+|. . .++|+.|++++|++
T Consensus 251 ~-l~~lp~~l~~l~~-L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~ 305 (330)
T 1xku_A 251 K-LVKVPGGLADHKY-IQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 305 (330)
T ss_dssp C-CSSCCTTTTTCSS-CCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred c-CccCChhhccCCC-cCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcc
Confidence 5 66666 5788 9999999998 666653 1 25689999999874
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=8.6e-23 Score=206.79 Aligned_cols=245 Identities=17% Similarity=0.183 Sum_probs=187.2
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecc-cCCC-CCCCCC-CCCCccEEEecCCCcc-ccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDK-YPLR-TLPSNF-KPENLVELNLHFSKVE-QLW 461 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~-~~l~-~lp~~~-~l~~L~~L~L~~~~i~-~l~ 461 (658)
.+++.|+++++.+.+ ...+|..+..++ +|++|++++ |.+. .+|..+ .+++|++|++++|.+. .+|
T Consensus 50 ~~l~~L~L~~~~l~~----------~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 118 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK----------PYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP 118 (313)
T ss_dssp CCEEEEEEECCCCSS----------CEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC
T ss_pred ceEEEEECCCCCccC----------CcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC
Confidence 578899999998732 015788888888 999999985 7776 677766 8899999999999988 778
Q ss_pred ccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcc-cccccccCCC-CCCEEeccCCCCCCcCCCCCCCCC
Q 047214 462 EGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFA-CVPSSIQNFK-YLSALSFEGCKSLRSFPSNFRFVC 537 (658)
Q Consensus 462 ~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~-~~~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~~~ 537 (658)
..+..+++|++|++++|.....+| ++.+++|++|++++|.+. .+|..+..++ +|++|++++|.....+|..+....
T Consensus 119 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~ 198 (313)
T 1ogq_A 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198 (313)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred HHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc
Confidence 888899999999999986544666 888999999999998886 6788888887 899999998854445665553223
Q ss_pred CcEEeccCCCCccccCc---ccCCccEEEccccccccccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCC
Q 047214 538 PVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGC 614 (658)
Q Consensus 538 L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 614 (658)
|+.|++++|......|. ..++|+.|++++|.+...+..+..+++|++|++++|...+.+|..+..+++|+.|++++|
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 88888888754333333 346777888888888865555778888888888888866677888888888888888887
Q ss_pred cCCccCC---CCCCcccEEeccCCccccccC
Q 047214 615 LNLQSLP---ALPLCLKSLDLRDCKMLQSLP 642 (658)
Q Consensus 615 ~~l~~l~---~l~~~L~~L~l~~~~~l~~i~ 642 (658)
+.-+.+| .+++ |+.|++++|+.+...|
T Consensus 279 ~l~~~ip~~~~l~~-L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 279 NLCGEIPQGGNLQR-FDVSAYANNKCLCGSP 308 (313)
T ss_dssp EEEEECCCSTTGGG-SCGGGTCSSSEEESTT
T ss_pred cccccCCCCccccc-cChHHhcCCCCccCCC
Confidence 6444566 4677 8888888887655433
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.5e-21 Score=199.72 Aligned_cols=250 Identities=15% Similarity=0.182 Sum_probs=161.6
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCC-CCC-CCCCccEEEecCCCccccccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLP-SNF-KPENLVELNLHFSKVEQLWEG 463 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp-~~~-~l~~L~~L~L~~~~i~~l~~~ 463 (658)
++|++|++++|.+. ...|..+..++ +|++|++++|.++.++ ..+ .+++|++|++++|.+..+|..
T Consensus 54 ~~l~~L~l~~n~i~------------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~ 120 (332)
T 2ft3_A 54 PDTTLLDLQNNDIS------------ELRKDDFKGLQ-HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN 120 (332)
T ss_dssp TTCCEEECCSSCCC------------EECTTTTTTCT-TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS
T ss_pred CCCeEEECCCCcCC------------ccCHhHhhCCC-CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc
Confidence 56777777777762 22345667776 7777777777777653 334 677777777777777777665
Q ss_pred ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccc---ccccccCCCCCCEEeccCCCCCCcCCCCCCCCC
Q 047214 464 KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFAC---VPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVC 537 (658)
Q Consensus 464 ~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 537 (658)
+. ++|++|++++|. +..+| ++.+++|++|++++|.+.. .+..+..+ +|++|++++| .++.+|.... ++
T Consensus 121 ~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~~~~-~~ 194 (332)
T 2ft3_A 121 LP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPKDLP-ET 194 (332)
T ss_dssp CC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCSSSC-SS
T ss_pred cc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCcccc-CC
Confidence 54 677777777773 44444 6777777777777776643 33445555 7777777776 4556665443 67
Q ss_pred CcEEeccCCCCccccCc---ccCCccEEEccccccccccc-cccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccC
Q 047214 538 PVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHG 613 (658)
Q Consensus 538 L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 613 (658)
|+.|++++|......+. ..++|+.|++++|.+..++. .+..+++|++|++++|. +..+|..+..+++|+.|++++
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCS
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCC
Confidence 77777777643222222 34567788888888876665 47778888888888776 446777777788888888887
Q ss_pred CcCCccCC-----C------CCCcccEEeccCCcccc-ccC-C---CCCCccEEeccCCC
Q 047214 614 CLNLQSLP-----A------LPLCLKSLDLRDCKMLQ-SLP-E---LPSCLEALDLTSCN 657 (658)
Q Consensus 614 ~~~l~~l~-----~------l~~~L~~L~l~~~~~l~-~i~-~---~~~~L~~L~l~~~~ 657 (658)
|+ ++.++ . .+. |+.|++++|+... .++ . ..++|+.+++++|+
T Consensus 274 N~-l~~~~~~~~~~~~~~~~~~~-l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 274 NN-ITKVGVNDFCPVGFGVKRAY-YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SC-CCBCCTTSSSCSSCCSSSCC-BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CC-CCccChhHcccccccccccc-ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 65 44443 1 345 7788888887431 222 2 35567788887774
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=2.9e-21 Score=214.80 Aligned_cols=257 Identities=17% Similarity=0.129 Sum_probs=212.4
Q ss_pred hcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccc
Q 047214 382 FTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLW 461 (658)
Q Consensus 382 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~ 461 (658)
+..+++|+.|+++++.+ ..+| .+..++ +|++|++++|.+..+|.. .+++|+.|++++|....-
T Consensus 281 ~~~l~~L~~L~l~~~~~-------------~~l~-~l~~~~-~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~- 343 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSI-------------KYLE-DVPKHF-KWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSIS- 343 (606)
T ss_dssp CGGGTTCSEEEEESCCC-------------CCCC-CCCTTC-CCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEE-
T ss_pred cccCCCCCEEEecCccc-------------hhhh-hccccc-cCCEEEcccccCcccccC-CCCccceeeccCCcCccc-
Confidence 78899999999999997 3456 777777 999999999999999966 999999999999954432
Q ss_pred ccccCCCCccEEeccCCCccccc---C--CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCC--CCCC
Q 047214 462 EGKKEAFKLKSINLSHCRHFIDM---S--YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFP--SNFR 534 (658)
Q Consensus 462 ~~~~~l~~L~~L~l~~~~~~~~~---~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~ 534 (658)
..+..+++|++|++++|. +... | +..+++|++|++++|.+..+|..+..+++|++|++++|......+ ....
T Consensus 344 ~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 344 FKKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp CCCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred hhhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 256789999999999995 3333 5 889999999999999999999889999999999999985444444 2347
Q ss_pred CCCCcEEeccCCCCccccCc---ccCCccEEEcccccccc--ccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEE
Q 047214 535 FVCPVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEE--VPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDL 609 (658)
Q Consensus 535 ~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 609 (658)
+++|+.|++++|......|. ..++|+.|++++|.+.. +|..+..+++|++|++++|......|..++++++|++|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence 99999999999875554554 35688899999999986 67778999999999999998766677889999999999
Q ss_pred eccCCcCCccCC----CCCCcccEEeccCCccccccCC---CCC-CccEEeccCCCC
Q 047214 610 FLHGCLNLQSLP----ALPLCLKSLDLRDCKMLQSLPE---LPS-CLEALDLTSCNM 658 (658)
Q Consensus 610 ~l~~~~~l~~l~----~l~~~L~~L~l~~~~~l~~i~~---~~~-~L~~L~l~~~~~ 658 (658)
++++|......| .+++ |++|++++|. ++.+|. .++ +|+.|++++|++
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~-L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYS-LSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTT-CCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred ECCCCcCCCcCHHHccCCCc-CCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCc
Confidence 999986433323 6888 9999999998 678886 343 699999999875
No 40
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=2.1e-21 Score=198.59 Aligned_cols=252 Identities=17% Similarity=0.229 Sum_probs=201.6
Q ss_pred CCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC-CC-CCCCccEEEecCCCcccc-c
Q 047214 385 MSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS-NF-KPENLVELNLHFSKVEQL-W 461 (658)
Q Consensus 385 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~~~i~~l-~ 461 (658)
..+++.++++++.+ ..+|..+. +++++|++++|.+..+++ .+ .+.+|++|++++|.++.+ |
T Consensus 32 ~c~l~~l~~~~~~l-------------~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 95 (332)
T 2ft3_A 32 HCHLRVVQCSDLGL-------------KAVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE 95 (332)
T ss_dssp EEETTEEECCSSCC-------------SSCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred cccCCEEECCCCCc-------------cccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH
Confidence 34789999999987 34666553 389999999999998865 34 899999999999999977 6
Q ss_pred ccccCCCCccEEeccCCCcccccCCCcCCCccEEEeecCCcccccc-cccCCCCCCEEeccCCCCCC---cCCCCCCCCC
Q 047214 462 EGKKEAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFACVPS-SIQNFKYLSALSFEGCKSLR---SFPSNFRFVC 537 (658)
Q Consensus 462 ~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~---~~~~~~~~~~ 537 (658)
..+..+++|++|++++| .+..+|-.-.++|++|++++|.+..++. .+..+++|++|++++|. ++ ..+..+...+
T Consensus 96 ~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~ 173 (332)
T 2ft3_A 96 KAFSPLRKLQKLYISKN-HLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGLK 173 (332)
T ss_dssp GGSTTCTTCCEEECCSS-CCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSCC
T ss_pred hHhhCcCCCCEEECCCC-cCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCCc
Confidence 67999999999999999 5667772222899999999999988875 48899999999999884 43 3344443239
Q ss_pred CcEEeccCCCCccccCc-ccCCccEEEcccccccccc-ccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCc
Q 047214 538 PVTINFSSCVNLIEFPQ-ISGKITRLYLGQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCL 615 (658)
Q Consensus 538 L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 615 (658)
|+.|++++|. +..+|. .+++|+.|++++|.+..++ ..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus 174 L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 174 LNYLRISEAK-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCEEECcCCC-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc
Confidence 9999999875 555664 3468999999999999876 458899999999999998655556678899999999999975
Q ss_pred CCccCC----CCCCcccEEeccCCccccccCC-C---------CCCccEEeccCCCC
Q 047214 616 NLQSLP----ALPLCLKSLDLRDCKMLQSLPE-L---------PSCLEALDLTSCNM 658 (658)
Q Consensus 616 ~l~~l~----~l~~~L~~L~l~~~~~l~~i~~-~---------~~~L~~L~l~~~~~ 658 (658)
+..+| .+++ |++|++++|+ ++.+|. . .++|+.|++++|++
T Consensus 253 -l~~lp~~l~~l~~-L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 253 -LSRVPAGLPDLKL-LQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp -CCBCCTTGGGCTT-CCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred -CeecChhhhcCcc-CCEEECCCCC-CCccChhHccccccccccccccceEeecCcc
Confidence 66776 5788 9999999987 566653 1 35689999999874
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=4e-21 Score=207.00 Aligned_cols=256 Identities=16% Similarity=0.204 Sum_probs=207.6
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCC-CCCC-CCCCccEEEecCCCccccccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTL-PSNF-KPENLVELNLHFSKVEQLWEG 463 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~L~~L~L~~~~i~~l~~~ 463 (658)
+++++|++++|.+. ...|..+..++ +|++|+|++|.+..+ |..+ ++++|++|+|++|.+..+|..
T Consensus 32 ~~l~~L~L~~n~l~------------~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 32 TETRLLDLGKNRIK------------TLNQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp TTCSEEECCSSCCC------------EECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred CCCcEEECCCCccc------------eECHhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcc
Confidence 68999999999983 33567888888 999999999999977 4445 899999999999999999876
Q ss_pred -ccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCccccc-ccccCCCCCCEEeccCCCCCCcCCC--CCCCCC
Q 047214 464 -KKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFACVP-SSIQNFKYLSALSFEGCKSLRSFPS--NFRFVC 537 (658)
Q Consensus 464 -~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~ 537 (658)
+..+++|++|++++|......| +..+++|++|++++|.+..++ ..+..+++|+.|++++| .++.++. ..++++
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHG 177 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTT
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCC
Confidence 7899999999999996444444 899999999999999998764 57899999999999998 6677765 347999
Q ss_pred CcEEeccCCCCccccC---cccCCccEEEcccccc-ccccccccCCCCCCEEecCCCccchhhh-hhhcCCCCCcEEecc
Q 047214 538 PVTINFSSCVNLIEFP---QISGKITRLYLGQSAI-EEVPSSIECLTDLEVLDLRDCKRLKRIS-TRFCKLRSLVDLFLH 612 (658)
Q Consensus 538 L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~~~i-~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~ 612 (658)
|+.|++++|......+ ...++|+.|++++|.. ..+|.......+|++|++++|... .+| ..+..+++|+.|+++
T Consensus 178 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 256 (477)
T 2id5_A 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLS 256 (477)
T ss_dssp CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECC
T ss_pred CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECC
Confidence 9999999975333222 2356889999998754 477776666779999999999744 454 568899999999999
Q ss_pred CCcCCccCC-----CCCCcccEEeccCCccccccCC---CCCCccEEeccCCCC
Q 047214 613 GCLNLQSLP-----ALPLCLKSLDLRDCKMLQSLPE---LPSCLEALDLTSCNM 658 (658)
Q Consensus 613 ~~~~l~~l~-----~l~~~L~~L~l~~~~~l~~i~~---~~~~L~~L~l~~~~~ 658 (658)
+|. +..++ .+++ |++|++++|......|. .+++|+.|+|++|.+
T Consensus 257 ~n~-l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 257 YNP-ISTIEGSMLHELLR-LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp SSC-CCEECTTSCTTCTT-CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred CCc-CCccChhhcccccc-CCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 986 44443 6788 99999999984433343 467899999999975
No 42
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=6e-21 Score=208.07 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=66.2
Q ss_pred CcceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCC-
Q 047214 359 TDAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRT- 437 (658)
Q Consensus 359 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~- 437 (658)
...++.+.+..+.+. .+....|.++++|++|++++|.+. .+|.. .++ +|++|++++|.++.
T Consensus 44 l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~-------------~lp~~--~l~-~L~~L~L~~N~l~~~ 105 (520)
T 2z7x_B 44 LSKLRILIISHNRIQ--YLDISVFKFNQELEYLDLSHNKLV-------------KISCH--PTV-NLKHLDLSFNAFDAL 105 (520)
T ss_dssp CTTCCEEECCSSCCC--EEEGGGGTTCTTCCEEECCSSCCC-------------EEECC--CCC-CCSEEECCSSCCSSC
T ss_pred cccccEEecCCCccC--CcChHHhhcccCCCEEecCCCcee-------------ecCcc--ccC-CccEEeccCCccccc
Confidence 455677766655543 355678889999999999999983 35555 555 88888888888875
Q ss_pred -CCCCC-CCCCccEEEecCCCcccccccccCCCCc--cEEeccCC
Q 047214 438 -LPSNF-KPENLVELNLHFSKVEQLWEGKKEAFKL--KSINLSHC 478 (658)
Q Consensus 438 -lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L--~~L~l~~~ 478 (658)
+|..+ .+.+|++|++++|.+.. ..+..+++| +.|++++|
T Consensus 106 ~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n 148 (520)
T 2z7x_B 106 PICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLG 148 (520)
T ss_dssp CCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEEC
T ss_pred cchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecc
Confidence 44555 77888888888777653 123333333 44444444
No 43
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=4e-21 Score=221.08 Aligned_cols=280 Identities=21% Similarity=0.263 Sum_probs=172.1
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceec-CCCCCCcccccceEEecccCCCCC
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLL-PDGLDYLPKNLRYLHWDKYPLRTL 438 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-p~~~~~l~~~L~~L~l~~~~l~~l 438 (658)
..++.+.+..+.+. .+....|.++++|++|++++|.. ...+ |..+.+++ +|++|+|++|.+..+
T Consensus 24 ~~l~~LdLs~N~i~--~i~~~~~~~l~~L~~LdLs~n~~------------~~~i~~~~f~~L~-~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 24 NTTERLLLSFNYIR--TVTASSFPFLEQLQLLELGSQYT------------PLTIDKEAFRNLP-NLRILDLGSSKIYFL 88 (844)
T ss_dssp TTCCEEEEESCCCC--EECSSSCSSCCSCSEEEECTTCC------------CCEECTTTTSSCT-TCCEEECTTCCCCEE
T ss_pred CCcCEEECCCCcCC--ccChhHCcccccCeEEeCCCCCC------------ccccCHHHhcCCC-CCCEEECCCCcCccc
Confidence 44566655555443 34556778888888888888854 2234 66777887 888888888888866
Q ss_pred -CCCC-CCCCccEEEecCCCccc-cccc--ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccc-cccc
Q 047214 439 -PSNF-KPENLVELNLHFSKVEQ-LWEG--KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACV-PSSI 509 (658)
Q Consensus 439 -p~~~-~l~~L~~L~L~~~~i~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~-~~~~ 509 (658)
|..+ ++.+|++|+|++|.+.. +|.. +..+++|++|++++|......+ ++++++|++|++++|.+..+ +..+
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 4445 78888888888888774 4443 7788888888888885332222 77888888888888777553 3445
Q ss_pred cCC--CCCCEEeccCCCCCCcCCCCC-CCC------CCcEEeccCCCCccccCc--------------------------
Q 047214 510 QNF--KYLSALSFEGCKSLRSFPSNF-RFV------CPVTINFSSCVNLIEFPQ-------------------------- 554 (658)
Q Consensus 510 ~~l--~~L~~L~l~~~~~l~~~~~~~-~~~------~L~~L~l~~~~~l~~~~~-------------------------- 554 (658)
..+ ++|+.|++++|......|..+ .++ .|+.|++++|......+.
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 444 566666666664433333221 122 366666666521111100
Q ss_pred ---------------ccCCccEEEcccccccccc-ccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCc
Q 047214 555 ---------------ISGKITRLYLGQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQ 618 (658)
Q Consensus 555 ---------------~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 618 (658)
...+|+.|++++|.+..++ ..+..+++|+.|++++|......|..+.++++|+.|++++|. +.
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~ 327 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL-LG 327 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC-CS
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC-CC
Confidence 0145667777776666543 336667777777777766544445566667777777777654 22
Q ss_pred cC-----CCCCCcccEEeccCCccccccCC----CCCCccEEeccCCC
Q 047214 619 SL-----PALPLCLKSLDLRDCKMLQSLPE----LPSCLEALDLTSCN 657 (658)
Q Consensus 619 ~l-----~~l~~~L~~L~l~~~~~l~~i~~----~~~~L~~L~l~~~~ 657 (658)
.+ ..+++ |++|++++|. +..++. .+++|+.|++++|.
T Consensus 328 ~~~~~~~~~l~~-L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 328 ELYSSNFYGLPK-VAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CCCSCSCSSCTT-CCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCC
T ss_pred ccCHHHhcCCCC-CCEEECCCCC-CCccChhhhcCCCCCCEEECCCCC
Confidence 22 24566 6777776665 344442 24556666666664
No 44
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=1.1e-20 Score=207.04 Aligned_cols=233 Identities=21% Similarity=0.238 Sum_probs=198.9
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccccccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKK 465 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~ 465 (658)
.++++|+++++.+ ..+|..+. + +|++|++++|.++.+|. .+++|++|+|++|.++.+|.
T Consensus 40 ~~l~~L~ls~n~L-------------~~lp~~l~--~-~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--- 98 (622)
T 3g06_A 40 NGNAVLNVGESGL-------------TTLPDCLP--A-HITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--- 98 (622)
T ss_dssp HCCCEEECCSSCC-------------SCCCSCCC--T-TCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---
T ss_pred CCCcEEEecCCCc-------------CccChhhC--C-CCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---
Confidence 4689999999998 35677665 3 99999999999999998 67999999999999999987
Q ss_pred CCCCccEEeccCCCcccccCCCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccC
Q 047214 466 EAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSS 545 (658)
Q Consensus 466 ~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~ 545 (658)
.+++|++|++++| .+..+|- .+++|+.|++++|.+..+|.. +++|++|++++| .++.+|. .+++|+.|++++
T Consensus 99 ~l~~L~~L~Ls~N-~l~~l~~-~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~--~~~~L~~L~L~~ 170 (622)
T 3g06_A 99 LPPGLLELSIFSN-PLTHLPA-LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA--LPSELCKLWAYN 170 (622)
T ss_dssp CCTTCCEEEECSC-CCCCCCC-CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCS
T ss_pred CCCCCCEEECcCC-cCCCCCC-CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC--ccCCCCEEECCC
Confidence 7799999999999 5666663 678899999999999999874 489999999998 6777775 467999999998
Q ss_pred CCCccccCcccCCccEEEccccccccccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCCC-CC
Q 047214 546 CVNLIEFPQISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLPA-LP 624 (658)
Q Consensus 546 ~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-l~ 624 (658)
| .+..+|..+++|+.|++++|.++.+|. .+++|+.|++++|. +..+|. .+++|+.|++++| .++.+|. ++
T Consensus 171 N-~l~~l~~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~-l~~l~~---~~~~L~~L~Ls~N-~L~~lp~~l~ 241 (622)
T 3g06_A 171 N-QLTSLPMLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNR-LTSLPA---LPSGLKELIVSGN-RLTSLPVLPS 241 (622)
T ss_dssp S-CCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSSCCC---CCTTCCEEECCSS-CCSCCCCCCT
T ss_pred C-CCCCCcccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCc-ccccCC---CCCCCCEEEccCC-ccCcCCCCCC
Confidence 6 477788888999999999999999886 35899999999987 445554 3689999999997 4777874 55
Q ss_pred CcccEEeccCCccccccCCCCCCccEEeccCCCC
Q 047214 625 LCLKSLDLRDCKMLQSLPELPSCLEALDLTSCNM 658 (658)
Q Consensus 625 ~~L~~L~l~~~~~l~~i~~~~~~L~~L~l~~~~~ 658 (658)
+ |++|++++|. ++.+|..+++|+.|+|++|.+
T Consensus 242 ~-L~~L~Ls~N~-L~~lp~~~~~L~~L~Ls~N~L 273 (622)
T 3g06_A 242 E-LKELMVSGNR-LTSLPMLPSGLLSLSVYRNQL 273 (622)
T ss_dssp T-CCEEECCSSC-CSCCCCCCTTCCEEECCSSCC
T ss_pred c-CcEEECCCCC-CCcCCcccccCcEEeCCCCCC
Confidence 6 9999999996 778998889999999999975
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=5e-21 Score=211.24 Aligned_cols=265 Identities=20% Similarity=0.234 Sum_probs=157.9
Q ss_pred cCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecC
Q 047214 377 LDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHF 454 (658)
Q Consensus 377 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~ 454 (658)
++...|.++++|++|++++|.+. ...|..+..++ +|++|++++|.++.+|.. + .+++|++|++++
T Consensus 67 i~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~-~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 133 (570)
T 2z63_A 67 IEDGAYQSLSHLSTLILTGNPIQ------------SLALGAFSGLS-SLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCC------------EECTTTTTTCT-TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS
T ss_pred cCcccccCchhCCEEeCcCCcCC------------ccCHhhhcCcc-ccccccccccccccCCCccccccccccEEecCC
Confidence 34445556666666666666652 22345666666 777777777777766653 2 677777777777
Q ss_pred CCccc--ccccccCCCCccEEeccCCCcccccC-----------------------------------------------
Q 047214 455 SKVEQ--LWEGKKEAFKLKSINLSHCRHFIDMS----------------------------------------------- 485 (658)
Q Consensus 455 ~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~----------------------------------------------- 485 (658)
|.+.. +|..++++++|++|++++|.. ..++
T Consensus 134 n~l~~~~lp~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~ 212 (570)
T 2z63_A 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFD 212 (570)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECTTSCC-CEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCS
T ss_pred CccceecChhhhcccCCCCEEeCcCCcc-ceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccc
Confidence 77664 566677777777777766631 1110
Q ss_pred -----------------------------------------------------------------CCcCCCccEEEeecC
Q 047214 486 -----------------------------------------------------------------YPSAPNLETYLLDYT 500 (658)
Q Consensus 486 -----------------------------------------------------------------l~~l~~L~~L~l~~~ 500 (658)
+..+++|++|+++++
T Consensus 213 ~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 292 (570)
T 2z63_A 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292 (570)
T ss_dssp CTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC
T ss_pred cccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc
Confidence 222344555555555
Q ss_pred CcccccccccCCCCCCEEeccCCCCCCcCCCC---------------------CCCCCCcEEeccCCCCccc--cC---c
Q 047214 501 NFACVPSSIQNFKYLSALSFEGCKSLRSFPSN---------------------FRFVCPVTINFSSCVNLIE--FP---Q 554 (658)
Q Consensus 501 ~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~---------------------~~~~~L~~L~l~~~~~l~~--~~---~ 554 (658)
.+..+|..+..+ +|++|++++| .+..+|.. ..+++|+.|++++|..... .+ .
T Consensus 293 ~l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 370 (570)
T 2z63_A 293 TIERVKDFSYNF-GWQHLELVNC-KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370 (570)
T ss_dssp EECSCCBCCSCC-CCSEEEEESC-BCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHH
T ss_pred cchhhhhhhccC-CccEEeeccC-cccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccc
Confidence 555555555544 5555555554 23333331 2344555555554431110 01 1
Q ss_pred ccCCccEEEccccccccccccccCCCCCCEEecCCCccchhhh-hhhcCCCCCcEEeccCCcCCccCC----CCCCcccE
Q 047214 555 ISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRIS-TRFCKLRSLVDLFLHGCLNLQSLP----ALPLCLKS 629 (658)
Q Consensus 555 ~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~----~l~~~L~~ 629 (658)
..++|+.|++++|.+..++..+..+++|++|++++|......+ ..+..+++|+.|++++|......| .+++ |++
T Consensus 371 ~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~ 449 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEV 449 (570)
T ss_dssp TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-CCE
T ss_pred ccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc-CcE
Confidence 2356667777777766666666777777777777776444333 346778888888888876333333 5777 889
Q ss_pred EeccCCccc-cccCC---CCCCccEEeccCCCC
Q 047214 630 LDLRDCKML-QSLPE---LPSCLEALDLTSCNM 658 (658)
Q Consensus 630 L~l~~~~~l-~~i~~---~~~~L~~L~l~~~~~ 658 (658)
|++++|... ..+|. .+++|+.|++++|.+
T Consensus 450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l 482 (570)
T 2z63_A 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482 (570)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred EECcCCcCccccchhhhhcccCCCEEECCCCcc
Confidence 999888744 35664 467899999988864
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.86 E-value=7.7e-22 Score=199.78 Aligned_cols=245 Identities=15% Similarity=0.144 Sum_probs=203.0
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeec-CcccCcchhhhcccCceecCCCCCCcccccceEEecccCCC-C
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYV-PKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLR-T 437 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~-~ 437 (658)
..++.+.+....+.........+.++++|++|++++ |.+ ...+|..+..++ +|++|++++|.+. .
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l------------~~~~p~~l~~l~-~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL------------VGPIPPAIAKLT-QLHYLYITHTNVSGA 116 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTE------------ESCCCGGGGGCT-TCSEEEEEEECCEEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcc------------cccCChhHhcCC-CCCEEECcCCeeCCc
Confidence 457777766655543213456888999999999995 887 345888999998 9999999999998 7
Q ss_pred CCCCC-CCCCccEEEecCCCcc-cccccccCCCCccEEeccCCCcccccC--CCcCC-CccEEEeecCCcc-cccccccC
Q 047214 438 LPSNF-KPENLVELNLHFSKVE-QLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAP-NLETYLLDYTNFA-CVPSSIQN 511 (658)
Q Consensus 438 lp~~~-~l~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~-~L~~L~l~~~~~~-~~~~~~~~ 511 (658)
+|..+ .+++|++|++++|.+. .+|..+..+++|++|++++|.....+| +..++ +|++|++++|.+. .+|..+..
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 88777 8999999999999998 788889999999999999996555777 88888 9999999999996 57888888
Q ss_pred CCCCCEEeccCCCCCCcCCCCC-CCCCCcEEeccCCCCccccCc--ccCCccEEEccccccc-cccccccCCCCCCEEec
Q 047214 512 FKYLSALSFEGCKSLRSFPSNF-RFVCPVTINFSSCVNLIEFPQ--ISGKITRLYLGQSAIE-EVPSSIECLTDLEVLDL 587 (658)
Q Consensus 512 l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l 587 (658)
++ |+.|++++|......|..+ .+++|+.|++++|......|. ..++|++|++++|.+. .+|..+..+++|++|++
T Consensus 197 l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 87 9999999985444444443 799999999999865434443 4578999999999999 78888999999999999
Q ss_pred CCCccchhhhhhhcCCCCCcEEeccCCcCCcc
Q 047214 588 RDCKRLKRISTRFCKLRSLVDLFLHGCLNLQS 619 (658)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 619 (658)
++|...+.+|.. ..+++|+.|++++|+.+-.
T Consensus 276 s~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 276 SFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 999877778875 8899999999999875543
No 47
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=1e-20 Score=213.33 Aligned_cols=280 Identities=21% Similarity=0.201 Sum_probs=195.4
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCC
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLP 439 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp 439 (658)
..++.+.+..+.+. .++...|.++++|++|++++|.+. ...|..+..++ +|++|++++|.++.+|
T Consensus 25 ~~l~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~------------~~~~~~~~~l~-~L~~L~L~~n~l~~l~ 89 (680)
T 1ziw_A 25 TNITVLNLTHNQLR--RLPAANFTRYSQLTSLDVGFNTIS------------KLEPELCQKLP-MLKVLNLQHNELSQLS 89 (680)
T ss_dssp TTCSEEECCSSCCC--CCCGGGGGGGTTCSEEECCSSCCC------------CCCTTHHHHCT-TCCEEECCSSCCCCCC
T ss_pred CCCcEEECCCCCCC--CcCHHHHhCCCcCcEEECCCCccC------------ccCHHHHhccc-CcCEEECCCCccCccC
Confidence 45666666655543 356677899999999999999983 33567778888 9999999999999999
Q ss_pred CC-C-CCCCccEEEecCCCcccccc-cccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCccccccc---ccC
Q 047214 440 SN-F-KPENLVELNLHFSKVEQLWE-GKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFACVPSS---IQN 511 (658)
Q Consensus 440 ~~-~-~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~---~~~ 511 (658)
.. + .+.+|++|++++|.+..++. .+..+++|++|++++|......| ++.+++|++|++++|.+..+++. ...
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 169 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA 169 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccc
Confidence 74 4 89999999999999988874 58899999999999995443334 88899999999999988777643 335
Q ss_pred CCCCCEEeccCCCCCCcCCCC-C-C---------------------------CCCCcEEeccCCCCccccCccc-----C
Q 047214 512 FKYLSALSFEGCKSLRSFPSN-F-R---------------------------FVCPVTINFSSCVNLIEFPQIS-----G 557 (658)
Q Consensus 512 l~~L~~L~l~~~~~l~~~~~~-~-~---------------------------~~~L~~L~l~~~~~l~~~~~~~-----~ 557 (658)
+++|++|++++| .+..++.. + . .++|+.|++++|......|..+ +
T Consensus 170 ~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~ 248 (680)
T 1ziw_A 170 NSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248 (680)
T ss_dssp TCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGS
T ss_pred cccccEEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcC
Confidence 688999999988 44444332 1 1 2567777777764333333332 3
Q ss_pred CccEEEcccccccccc-ccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCc-----c--------CCCC
Q 047214 558 KITRLYLGQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQ-----S--------LPAL 623 (658)
Q Consensus 558 ~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-----~--------l~~l 623 (658)
+|+.|++++|.+..++ ..+..+++|++|++++|......|..++++++|+.|++++|..-. . +..+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 4888888888888665 347788888888888887655566667777777777776543111 1 1235
Q ss_pred CCcccEEeccCCccccccCC---CCCCccEEeccCC
Q 047214 624 PLCLKSLDLRDCKMLQSLPE---LPSCLEALDLTSC 656 (658)
Q Consensus 624 ~~~L~~L~l~~~~~l~~i~~---~~~~L~~L~l~~~ 656 (658)
++ |++|++++|......|. .+++|++|++++|
T Consensus 329 ~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 329 KC-LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TT-CCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred CC-CCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence 55 66666666653222221 2345555555554
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=8.3e-21 Score=208.45 Aligned_cols=127 Identities=18% Similarity=0.228 Sum_probs=108.0
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecCCCccccccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQLWEG 463 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~~ 463 (658)
++|++|++++|.+ ....|..+..++ +|++|++++|.+..+++. + .+.+|++|++++|.+..++..
T Consensus 26 ~~L~~L~Ls~n~l------------~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 26 AAMKSLDLSFNKI------------TYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TTCCEEECCSSCC------------CEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred CCccEEECcCCcc------------CccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence 7899999999998 334577889998 999999999999987753 4 899999999999999988776
Q ss_pred -ccCCCCccEEeccCCCccc-ccC--CCcCCCccEEEeecCC-ccccc-ccccCCCCCCEEeccCCCC
Q 047214 464 -KKEAFKLKSINLSHCRHFI-DMS--YPSAPNLETYLLDYTN-FACVP-SSIQNFKYLSALSFEGCKS 525 (658)
Q Consensus 464 -~~~l~~L~~L~l~~~~~~~-~~~--l~~l~~L~~L~l~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~ 525 (658)
++.+++|++|++++|.... ..| ++++++|++|++++|. +..+| ..+..+++|++|++++|..
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred HhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 9999999999999995332 334 8999999999999987 67776 4688899999999888743
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=1.9e-20 Score=205.87 Aligned_cols=274 Identities=17% Similarity=0.132 Sum_probs=176.4
Q ss_pred CcceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCC
Q 047214 359 TDAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTL 438 (658)
Q Consensus 359 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~l 438 (658)
...++.+.+..+.+. .+....|.++++|++|++++|.+. .+|.. .++ +|++|++++|.+..+
T Consensus 75 l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~-------------~lp~~--~l~-~L~~L~Ls~N~l~~l 136 (562)
T 3a79_B 75 LSELRVLRLSHNRIR--SLDFHVFLFNQDLEYLDVSHNRLQ-------------NISCC--PMA-SLRHLDLSFNDFDVL 136 (562)
T ss_dssp CTTCCEEECCSCCCC--EECTTTTTTCTTCCEEECTTSCCC-------------EECSC--CCT-TCSEEECCSSCCSBC
T ss_pred CCCccEEECCCCCCC--cCCHHHhCCCCCCCEEECCCCcCC-------------ccCcc--ccc-cCCEEECCCCCcccc
Confidence 345666666655543 456677888999999999999973 45655 566 888888888888876
Q ss_pred C--CCC-CCCCccEEEecCCCcccccccccCCCCc--cEEeccCCCc--ccccC--CCc---------------------
Q 047214 439 P--SNF-KPENLVELNLHFSKVEQLWEGKKEAFKL--KSINLSHCRH--FIDMS--YPS--------------------- 488 (658)
Q Consensus 439 p--~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L--~~L~l~~~~~--~~~~~--l~~--------------------- 488 (658)
| ..+ .+++|++|++++|.+... .+..+.+| +.|++++|.. ....| +..
T Consensus 137 ~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~ 214 (562)
T 3a79_B 137 PVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214 (562)
T ss_dssp CCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCE
T ss_pred CchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhh
Confidence 5 344 788888888888877642 23333344 6666666533 11111 111
Q ss_pred -----CC-------------------------------------------------------CccEEEeecCCcc-cccc
Q 047214 489 -----AP-------------------------------------------------------NLETYLLDYTNFA-CVPS 507 (658)
Q Consensus 489 -----l~-------------------------------------------------------~L~~L~l~~~~~~-~~~~ 507 (658)
++ +|++|++++|.+. .+|.
T Consensus 215 ~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~ 294 (562)
T 3a79_B 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDR 294 (562)
T ss_dssp EEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCC
T ss_pred hcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccc
Confidence 11 4455555554443 3443
Q ss_pred cc-----------------------------------------------------cCCCCCCEEeccCCCCCCcCCCCC-
Q 047214 508 SI-----------------------------------------------------QNFKYLSALSFEGCKSLRSFPSNF- 533 (658)
Q Consensus 508 ~~-----------------------------------------------------~~l~~L~~L~l~~~~~l~~~~~~~- 533 (658)
.+ ..+++|++|++++|......|..+
T Consensus 295 ~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 374 (562)
T 3a79_B 295 EEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCS 374 (562)
T ss_dssp CCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC
T ss_pred hhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhc
Confidence 32 566777777777774433344433
Q ss_pred CCCCCcEEeccCCCCccccC------cccCCccEEEcccccccc-cccc-ccCCCCCCEEecCCCccchhhhhhhcCCCC
Q 047214 534 RFVCPVTINFSSCVNLIEFP------QISGKITRLYLGQSAIEE-VPSS-IECLTDLEVLDLRDCKRLKRISTRFCKLRS 605 (658)
Q Consensus 534 ~~~~L~~L~l~~~~~l~~~~------~~~~~L~~L~l~~~~i~~-~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 605 (658)
++++|+.|++++|. +..++ ...++|+.|++++|.+.. +|.. +..+++|++|++++|.....+|..+. ++
T Consensus 375 ~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~ 451 (562)
T 3a79_B 375 TLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PK 451 (562)
T ss_dssp SCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TT
T ss_pred ccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--Cc
Confidence 67778888887763 33322 234677788888887776 6654 66778888888888775555544332 57
Q ss_pred CcEEeccCCcCCccCC----CCCCcccEEeccCCccccccCC----CCCCccEEeccCCCC
Q 047214 606 LVDLFLHGCLNLQSLP----ALPLCLKSLDLRDCKMLQSLPE----LPSCLEALDLTSCNM 658 (658)
Q Consensus 606 L~~L~l~~~~~l~~l~----~l~~~L~~L~l~~~~~l~~i~~----~~~~L~~L~l~~~~~ 658 (658)
|+.|++++|. ++.+| .+++ |++|++++|. ++.+|. .+++|+.|++++|++
T Consensus 452 L~~L~L~~N~-l~~ip~~~~~l~~-L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 452 VKVLDLHNNR-IMSIPKDVTHLQA-LQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CSEEECCSSC-CCCCCTTTTSSCC-CSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCEEECCCCc-CcccChhhcCCCC-CCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCc
Confidence 8888888864 66666 4677 8888888877 567775 356788888888864
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=4.2e-20 Score=197.37 Aligned_cols=230 Identities=20% Similarity=0.256 Sum_probs=171.9
Q ss_pred CCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecCCCccccc-cc
Q 047214 387 NLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQLW-EG 463 (658)
Q Consensus 387 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~-~~ 463 (658)
..+.++.++..+ ..+|..+. .++++|+|++|.++.+++. + .+++|++|+|++|.+..++ ..
T Consensus 55 ~~~~v~c~~~~l-------------~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 118 (452)
T 3zyi_A 55 QFSKVVCTRRGL-------------SEVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA 118 (452)
T ss_dssp SSCEEECCSSCC-------------SSCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CCcEEEECCCCc-------------CccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh
Confidence 456777777765 34565443 4899999999999877544 4 8899999999999988776 45
Q ss_pred ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccccc-cccCCCCCCEEeccCCCCCCcCCCC--CCCCC
Q 047214 464 KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPS-SIQNFKYLSALSFEGCKSLRSFPSN--FRFVC 537 (658)
Q Consensus 464 ~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~ 537 (658)
+..+++|++|++++|. +..+| +..+++|++|++++|.+..+|. .+..+++|++|++++|..+..++.. .++++
T Consensus 119 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 119 FNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred ccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 8888999999999884 55665 7888999999999988888765 5788899999999988788887763 36888
Q ss_pred CcEEeccCCCCccccCc--ccCCccEEEccccccccc-cccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCC
Q 047214 538 PVTINFSSCVNLIEFPQ--ISGKITRLYLGQSAIEEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGC 614 (658)
Q Consensus 538 L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 614 (658)
|+.|++++|. +..+|. .+.+|+.|++++|.+..+ |..+.++++|++|++++|......+..+.++++|+.|++++|
T Consensus 198 L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 198 LKYLNLGMCN-IKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp CCEEECTTSC-CSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEEECCCCc-ccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 8888888763 444553 345777888888877766 445777888888888877755555666777778888888776
Q ss_pred cCCccCC-----CCCCcccEEeccCCc
Q 047214 615 LNLQSLP-----ALPLCLKSLDLRDCK 636 (658)
Q Consensus 615 ~~l~~l~-----~l~~~L~~L~l~~~~ 636 (658)
. ++.++ .+++ |+.|++++|+
T Consensus 277 ~-l~~~~~~~~~~l~~-L~~L~L~~Np 301 (452)
T 3zyi_A 277 N-LSSLPHDLFTPLRY-LVELHLHHNP 301 (452)
T ss_dssp C-CSCCCTTSSTTCTT-CCEEECCSSC
T ss_pred c-CCccChHHhccccC-CCEEEccCCC
Confidence 4 54544 3566 7777777776
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=2e-20 Score=189.09 Aligned_cols=233 Identities=19% Similarity=0.212 Sum_probs=167.0
Q ss_pred CcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC--CCCCccEEEecCCCcccc---cc
Q 047214 388 LRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF--KPENLVELNLHFSKVEQL---WE 462 (658)
Q Consensus 388 L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l---~~ 462 (658)
.+.++.+++.+ ..+|..+. +++++|++++|.++.+|... .+++|++|++++|.+..+ +.
T Consensus 9 ~~~l~c~~~~l-------------~~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 9 GTEIRCNSKGL-------------TSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp TTEEECCSSCC-------------SSCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred CCEEEcCCCCc-------------ccCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 35677777765 44565443 38999999999999988864 889999999999988755 55
Q ss_pred cccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcccccc--cccCCCCCCEEeccCCCCCCcCCCCC-CCCC
Q 047214 463 GKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFACVPS--SIQNFKYLSALSFEGCKSLRSFPSNF-RFVC 537 (658)
Q Consensus 463 ~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~ 537 (658)
.+..+++|++|++++| .+..+| +..+++|++|++++|.+..++. .+..+++|++|++++|......+..+ .+++
T Consensus 73 ~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 151 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151 (306)
T ss_dssp HHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTT
T ss_pred ccccccccCEEECCCC-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcC
Confidence 6677889999999988 455666 8889999999999988887764 68888999999998874333333333 6788
Q ss_pred CcEEeccCCCCcc-ccCc---ccCCccEEEccccccccc-cccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEecc
Q 047214 538 PVTINFSSCVNLI-EFPQ---ISGKITRLYLGQSAIEEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLH 612 (658)
Q Consensus 538 L~~L~l~~~~~l~-~~~~---~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 612 (658)
|+.|++++|.... ..|. .+++|+.|++++|.+..+ |..+..+++|++|++++|......+..+..+++|+.|+++
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 8888888875332 2343 345677888888887766 4457778888888888876444334456777788888888
Q ss_pred CCcCCccCC----CCCCcccEEeccCCcc
Q 047214 613 GCLNLQSLP----ALPLCLKSLDLRDCKM 637 (658)
Q Consensus 613 ~~~~l~~l~----~l~~~L~~L~l~~~~~ 637 (658)
+|......+ .+|.+|++|++++|+.
T Consensus 232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 775333222 4542278888887763
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=4.3e-20 Score=197.29 Aligned_cols=215 Identities=19% Similarity=0.242 Sum_probs=172.2
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecCCCccccccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQLWEG 463 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~~ 463 (658)
+++++|++++|.+ ....|..+..++ +|++|+|++|.+..+++. + ++.+|++|+|++|.++.+|..
T Consensus 75 ~~l~~L~L~~n~i------------~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 141 (452)
T 3zyi_A 75 SNTRYLNLMENNI------------QMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141 (452)
T ss_dssp TTCSEEECCSSCC------------CEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTT
T ss_pred CCccEEECcCCcC------------ceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChh
Confidence 6899999999988 334577788888 999999999999877754 3 789999999999999888776
Q ss_pred -ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeec-CCcccccc-cccCCCCCCEEeccCCCCCCcCCCCCCCCC
Q 047214 464 -KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDY-TNFACVPS-SIQNFKYLSALSFEGCKSLRSFPSNFRFVC 537 (658)
Q Consensus 464 -~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~-~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 537 (658)
+..+++|++|++++|. +..+| +..+++|+.|++++ +.+..++. .+..+++|++|++++| .+..+|....+++
T Consensus 142 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~ 219 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVG 219 (452)
T ss_dssp TSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTT
T ss_pred hhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccccccccc
Confidence 7789999999999984 55565 88899999999988 66777765 5788999999999987 6778888778899
Q ss_pred CcEEeccCCCCccccCc---ccCCccEEEccccccccccc-cccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccC
Q 047214 538 PVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHG 613 (658)
Q Consensus 538 L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 613 (658)
|+.|++++|......|. .+++|+.|++++|.+..++. .+..+++|+.|++++|......+..+..+++|+.|++++
T Consensus 220 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp CCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred ccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 99999998754333333 34678899999999887644 578899999999999874433345577889999999998
Q ss_pred Cc
Q 047214 614 CL 615 (658)
Q Consensus 614 ~~ 615 (658)
|+
T Consensus 300 Np 301 (452)
T 3zyi_A 300 NP 301 (452)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=4e-20 Score=196.82 Aligned_cols=209 Identities=21% Similarity=0.271 Sum_probs=128.1
Q ss_pred ccceEEecccCCCCCCCC-C-CCCCccEEEecCCCccccc-ccccCCCCccEEeccCCCcccccC---CCcCCCccEEEe
Q 047214 424 NLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQLW-EGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLL 497 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l 497 (658)
++++|+|++|.++.++.. + .+++|++|+|++|.+..++ ..+..+++|++|++++| .+..+| +..+++|++|++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeC
Confidence 666666666666655533 2 6666777777766666554 33666666777777666 344444 666666777777
Q ss_pred ecCCcccccc-cccCCCCCCEEeccCCCCCCcCCCC--CCCCCCcEEeccCCCCccccCc--ccCCccEEEccccccccc
Q 047214 498 DYTNFACVPS-SIQNFKYLSALSFEGCKSLRSFPSN--FRFVCPVTINFSSCVNLIEFPQ--ISGKITRLYLGQSAIEEV 572 (658)
Q Consensus 498 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~i~~~ 572 (658)
++|.+..++. .+..+++|++|++++|..+..++.. .++++|+.|++++| .+..+|. ...+|+.|++++|.++.+
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCCccCcc
Confidence 6666666553 4666666777777666566665542 25666666666665 3444443 234666666666666655
Q ss_pred -cccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC-----CCCCcccEEeccCCc
Q 047214 573 -PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP-----ALPLCLKSLDLRDCK 636 (658)
Q Consensus 573 -~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-----~l~~~L~~L~l~~~~ 636 (658)
|..+..+++|++|++++|......+..+.++++|+.|++++|. ++.++ .+++ |+.|++++|+
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~-L~~L~L~~Np 290 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHH-LERIHLHHNP 290 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTT-CCEEECCSSC
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccC-CCEEEcCCCC
Confidence 3346666777777777666444445556666677777776653 44443 3566 6777776665
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=5.6e-20 Score=195.69 Aligned_cols=228 Identities=21% Similarity=0.248 Sum_probs=193.8
Q ss_pred ccceEEecccCCCCCCCCCCCCCccEEEecCCCccccc-ccccCCCCccEEeccCCCcccccC---CCcCCCccEEEeec
Q 047214 424 NLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLW-EGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDY 499 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~ 499 (658)
....++..+.+++.+|..+. .+++.|+|++|.+..++ ..+..+++|++|++++|. +..++ +.++++|++|++++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCC
Confidence 45677888889999998774 68999999999999886 458999999999999994 55554 89999999999999
Q ss_pred CCcccccc-cccCCCCCCEEeccCCCCCCcCCC--CCCCCCCcEEeccCCCCccccCc----ccCCccEEEccccccccc
Q 047214 500 TNFACVPS-SIQNFKYLSALSFEGCKSLRSFPS--NFRFVCPVTINFSSCVNLIEFPQ----ISGKITRLYLGQSAIEEV 572 (658)
Q Consensus 500 ~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~~~ 572 (658)
|.+..++. .+..+++|++|++++| .+..++. ..++++|+.|++++|..+..++. ..++|+.|++++|.++.+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 99999876 5899999999999998 5677765 33799999999999888877664 357899999999999999
Q ss_pred cccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC-----CCCCcccEEeccCCccccccCC----
Q 047214 573 PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP-----ALPLCLKSLDLRDCKMLQSLPE---- 643 (658)
Q Consensus 573 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-----~l~~~L~~L~l~~~~~l~~i~~---- 643 (658)
|. +..+++|++|++++|......|..+.++++|+.|++++|. ++.++ .+++ |++|++++|. ++.+|.
T Consensus 201 ~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~-L~~L~L~~N~-l~~~~~~~~~ 276 (440)
T 3zyj_A 201 PN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQS-LVEINLAHNN-LTLLPHDLFT 276 (440)
T ss_dssp CC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTT-CCEEECTTSC-CCCCCTTTTS
T ss_pred cc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCC-CCEEECCCCC-CCccChhHhc
Confidence 85 8899999999999998666668889999999999999976 44433 6788 9999999997 666664
Q ss_pred CCCCccEEeccCCCC
Q 047214 644 LPSCLEALDLTSCNM 658 (658)
Q Consensus 644 ~~~~L~~L~l~~~~~ 658 (658)
.+++|+.|+|++|++
T Consensus 277 ~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 277 PLHHLERIHLHHNPW 291 (440)
T ss_dssp SCTTCCEEECCSSCE
T ss_pred cccCCCEEEcCCCCc
Confidence 467899999999874
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=5.6e-20 Score=185.79 Aligned_cols=215 Identities=20% Similarity=0.210 Sum_probs=143.8
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCC-CCCcccccceEEecccCCCCC---CCCC-CCCCccEEEecCCCcccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDG-LDYLPKNLRYLHWDKYPLRTL---PSNF-KPENLVELNLHFSKVEQL 460 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~-~~~l~~~L~~L~l~~~~l~~l---p~~~-~l~~L~~L~L~~~~i~~l 460 (658)
++|+.|++++|.+. .+|.. +..++ +|++|++++|.+..+ |..+ .+.+|++|++++|.+..+
T Consensus 28 ~~l~~L~L~~n~l~-------------~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l 93 (306)
T 2z66_A 28 SSATRLELESNKLQ-------------SLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 93 (306)
T ss_dssp TTCCEEECCSSCCC-------------CCCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEE
T ss_pred CCCCEEECCCCccC-------------ccCHhHhhccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCccccC
Confidence 57777888877762 34443 45666 788888877777654 2222 677788888888777777
Q ss_pred cccccCCCCccEEeccCCCcccccC----CCcCCCccEEEeecCCcccc-cccccCCCCCCEEeccCCCCCC-cCCCCC-
Q 047214 461 WEGKKEAFKLKSINLSHCRHFIDMS----YPSAPNLETYLLDYTNFACV-PSSIQNFKYLSALSFEGCKSLR-SFPSNF- 533 (658)
Q Consensus 461 ~~~~~~l~~L~~L~l~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~-~~~~~~- 533 (658)
|..+..+++|++|++++|. +..++ +..+++|++|++++|.+... +..+..+++|++|++++|.... .+|..+
T Consensus 94 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 172 (306)
T 2z66_A 94 SSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172 (306)
T ss_dssp EEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred hhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh
Confidence 7777777788888887774 33332 66777788888877777554 3456777778888887764322 244433
Q ss_pred CCCCCcEEeccCCCCccccCc---ccCCccEEEccccccccccc-cccCCCCCCEEecCCCccchhhhhhhcCCC-CCcE
Q 047214 534 RFVCPVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLR-SLVD 608 (658)
Q Consensus 534 ~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~ 608 (658)
.+++|+.|++++|......|. ..++|+.|++++|.+..++. .+..+++|++|++++|......|..+..++ +|+.
T Consensus 173 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~ 252 (306)
T 2z66_A 173 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 252 (306)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCE
T ss_pred hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCE
Confidence 677778888877643322233 23567777887777776655 467777788888887776555666666664 7788
Q ss_pred EeccCCc
Q 047214 609 LFLHGCL 615 (658)
Q Consensus 609 L~l~~~~ 615 (658)
|++++|+
T Consensus 253 L~L~~N~ 259 (306)
T 2z66_A 253 LNLTQND 259 (306)
T ss_dssp EECTTCC
T ss_pred EEccCCC
Confidence 8887765
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=8.5e-20 Score=210.07 Aligned_cols=261 Identities=15% Similarity=0.112 Sum_probs=201.4
Q ss_pred CCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccC-CCCC-CCCC-CCCCccEEEecCCCcccc
Q 047214 384 NMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYP-LRTL-PSNF-KPENLVELNLHFSKVEQL 460 (658)
Q Consensus 384 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~-l~~l-p~~~-~l~~L~~L~L~~~~i~~l 460 (658)
-.++|++|++++|.+ ....|..+..++ +|++|++++|. +..+ |..+ ++++|++|+|++|.+..+
T Consensus 22 lp~~l~~LdLs~N~i------------~~i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~ 88 (844)
T 3j0a_A 22 VLNTTERLLLSFNYI------------RTVTASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88 (844)
T ss_dssp SCTTCCEEEEESCCC------------CEECSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred CCCCcCEEECCCCcC------------CccChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence 357999999999998 344678899998 99999999994 4566 4445 899999999999999977
Q ss_pred -cccccCCCCccEEeccCCCcccccC----CCcCCCccEEEeecCCccccc--ccccCCCCCCEEeccCCCCCCcCCCCC
Q 047214 461 -WEGKKEAFKLKSINLSHCRHFIDMS----YPSAPNLETYLLDYTNFACVP--SSIQNFKYLSALSFEGCKSLRSFPSNF 533 (658)
Q Consensus 461 -~~~~~~l~~L~~L~l~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~ 533 (658)
|..+..+++|++|++++|......| ++++++|++|++++|.+..++ ..++++++|++|++++|......+..+
T Consensus 89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 7779999999999999996443333 889999999999999997763 468999999999999985433333333
Q ss_pred -CC--CCCcEEeccCCCCccccCcccC---------CccEEEccccccc-ccccc-------------------------
Q 047214 534 -RF--VCPVTINFSSCVNLIEFPQISG---------KITRLYLGQSAIE-EVPSS------------------------- 575 (658)
Q Consensus 534 -~~--~~L~~L~l~~~~~l~~~~~~~~---------~L~~L~l~~~~i~-~~~~~------------------------- 575 (658)
.+ ++|+.|++++|......|..+. +|+.|++++|.+. ..+..
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 33 8999999999865554443221 3889999988654 22211
Q ss_pred -----------ccC--CCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCcc----CCCCCCcccEEeccCCccc
Q 047214 576 -----------IEC--LTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQS----LPALPLCLKSLDLRDCKML 638 (658)
Q Consensus 576 -----------~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~----l~~l~~~L~~L~l~~~~~l 638 (658)
+.+ .++|+.|++++|......+..+..+++|+.|++++|..-.. +..+++ |++|++++|...
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDN-LQVLNLSYNLLG 327 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSS-CCEEEEESCCCS
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCC-CCEEECCCCCCC
Confidence 111 36899999999986666677789999999999999763322 226888 999999999843
Q ss_pred cccCC---CCCCccEEeccCCCC
Q 047214 639 QSLPE---LPSCLEALDLTSCNM 658 (658)
Q Consensus 639 ~~i~~---~~~~L~~L~l~~~~~ 658 (658)
...|. .+++|+.|++++|.+
T Consensus 328 ~~~~~~~~~l~~L~~L~L~~N~i 350 (844)
T 3j0a_A 328 ELYSSNFYGLPKVAYIDLQKNHI 350 (844)
T ss_dssp CCCSCSCSSCTTCCEEECCSCCC
T ss_pred ccCHHHhcCCCCCCEEECCCCCC
Confidence 33343 567899999999875
No 57
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=204.16 Aligned_cols=236 Identities=17% Similarity=0.195 Sum_probs=161.5
Q ss_pred ceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC
Q 047214 361 AIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS 440 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~ 440 (658)
.++.+.+..+.+ ..+....|.++++|++|++++|.+. ...|..+..++ +|++|++++|.++.+|+
T Consensus 29 ~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~------------~i~~~~~~~l~-~L~~L~L~~n~l~~~~~ 93 (570)
T 2z63_A 29 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQ------------TIEDGAYQSLS-HLSTLILTGNPIQSLAL 93 (570)
T ss_dssp SCCEEECCSCCC--CEECTTTTTTCSSCCEEECTTCCCC------------EECTTTTTTCT-TCCEEECTTCCCCEECT
T ss_pred cccEEEccCCcc--CccChhHhhCCCCceEEECCCCcCC------------ccCcccccCch-hCCEEeCcCCcCCccCH
Confidence 456665555444 3355667889999999999999872 33456788888 99999999999998775
Q ss_pred C-C-CCCCccEEEecCCCcccccc-cccCCCCccEEeccCCCccc-ccC--CCcCCCccEEEeecCCccccc-ccccCCC
Q 047214 441 N-F-KPENLVELNLHFSKVEQLWE-GKKEAFKLKSINLSHCRHFI-DMS--YPSAPNLETYLLDYTNFACVP-SSIQNFK 513 (658)
Q Consensus 441 ~-~-~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~--l~~l~~L~~L~l~~~~~~~~~-~~~~~l~ 513 (658)
. + .+++|++|++++|.+..++. .++.+++|++|++++|.... .+| ++++++|++|++++|.+..++ ..+..++
T Consensus 94 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred hhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 4 4 89999999999999998876 58899999999999985333 356 889999999999999887764 4566677
Q ss_pred CC----CEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCc----------------------------------------
Q 047214 514 YL----SALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNL---------------------------------------- 549 (658)
Q Consensus 514 ~L----~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l---------------------------------------- 549 (658)
+| +.|++++|......+..+...+|+.|++++|...
T Consensus 174 ~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp TCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred ccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 77 7888887743322333334445666666554100
Q ss_pred ------------------cccC---cccCCccEEEccccccccccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcE
Q 047214 550 ------------------IEFP---QISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVD 608 (658)
Q Consensus 550 ------------------~~~~---~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 608 (658)
...| ..+++|+.|++++|.+..+|..+..+ +|++|++++|... .+|. ..+++|+.
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~ 329 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKR 329 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCE
T ss_pred ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCE
Confidence 0011 12356667777777777777766666 7777777766532 4443 23444555
Q ss_pred EeccCCc
Q 047214 609 LFLHGCL 615 (658)
Q Consensus 609 L~l~~~~ 615 (658)
|++++|.
T Consensus 330 L~l~~n~ 336 (570)
T 2z63_A 330 LTFTSNK 336 (570)
T ss_dssp EEEESCB
T ss_pred EeCcCCc
Confidence 5444443
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=193.22 Aligned_cols=239 Identities=15% Similarity=0.188 Sum_probs=158.9
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecCCCccccccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQLWEG 463 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~~ 463 (658)
++|++|++++|.+. ...+..+..++ +|++|++++|.++.+++. + .+++|++|++++|.++.+|..
T Consensus 52 ~~L~~L~l~~n~i~------------~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 118 (353)
T 2z80_A 52 EAVKSLDLSNNRIT------------YISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS 118 (353)
T ss_dssp TTCCEEECTTSCCC------------EECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH
T ss_pred ccCcEEECCCCcCc------------ccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh
Confidence 47888888888762 22233667776 788888888887766543 3 777888888888888777765
Q ss_pred -ccCCCCccEEeccCCCcccccC----CCcCCCccEEEeecC-Cccccc-ccccCCCCCCEEeccCCCCCCcCCCCC-CC
Q 047214 464 -KKEAFKLKSINLSHCRHFIDMS----YPSAPNLETYLLDYT-NFACVP-SSIQNFKYLSALSFEGCKSLRSFPSNF-RF 535 (658)
Q Consensus 464 -~~~l~~L~~L~l~~~~~~~~~~----l~~l~~L~~L~l~~~-~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~ 535 (658)
+..+++|++|++++|. +..+| +..+++|++|++++| .+..++ ..+..+++|++|++++|......|..+ .+
T Consensus 119 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred HhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 6777888888888773 33443 667778888888776 455553 457777888888888774333234333 67
Q ss_pred CCCcEEeccCCCCccccCc----ccCCccEEEcccccccccccc----ccCCCCCCEEecCCCccc----hhhhhhhcCC
Q 047214 536 VCPVTINFSSCVNLIEFPQ----ISGKITRLYLGQSAIEEVPSS----IECLTDLEVLDLRDCKRL----KRISTRFCKL 603 (658)
Q Consensus 536 ~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~~~~~~----~~~l~~L~~L~l~~~~~~----~~~~~~~~~l 603 (658)
++|+.|++++|. +..+|. ..++|+.|++++|.++.++.. ....+.++.++++++... ..+|..+..+
T Consensus 198 ~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 198 QNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp SEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred ccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 778888887764 344443 246777888887777765432 234566777777766533 2466677778
Q ss_pred CCCcEEeccCCcCCccCC-----CCCCcccEEeccCCcccccc
Q 047214 604 RSLVDLFLHGCLNLQSLP-----ALPLCLKSLDLRDCKMLQSL 641 (658)
Q Consensus 604 ~~L~~L~l~~~~~l~~l~-----~l~~~L~~L~l~~~~~l~~i 641 (658)
++|+.|++++|. ++.+| .+++ |++|++++|+.....
T Consensus 277 ~~L~~L~Ls~N~-l~~i~~~~~~~l~~-L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 277 SGLLELEFSRNQ-LKSVPDGIFDRLTS-LQKIWLHTNPWDCSC 317 (353)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTT-CCEEECCSSCBCCCH
T ss_pred cCCCEEECCCCC-CCccCHHHHhcCCC-CCEEEeeCCCccCcC
Confidence 888888888764 55555 4566 888888887744443
No 59
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=4.2e-19 Score=200.11 Aligned_cols=290 Identities=19% Similarity=0.183 Sum_probs=177.5
Q ss_pred eeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhh---hcc--------------cCceecCC----CCCC
Q 047214 362 IEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEE---QLS--------------DSKVLLPD----GLDY 420 (658)
Q Consensus 362 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~--------------~~~~~~p~----~~~~ 420 (658)
++.+.+..+.+. .+....|..+++|++|++++|.+.+.+... ... .....+|. .+..
T Consensus 250 L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 250 LTMLDLSYNNLN--VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CCEEECTTSCCC--EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCEEECCCCCcC--ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence 455554444332 334556777788888888887764321000 000 00001111 3333
Q ss_pred cccccceEEecccCCCCCCCCC--CCCCccEEEecCCCc--cccccc-ccC--CCCccEEeccCCCcccccC--CCcCCC
Q 047214 421 LPKNLRYLHWDKYPLRTLPSNF--KPENLVELNLHFSKV--EQLWEG-KKE--AFKLKSINLSHCRHFIDMS--YPSAPN 491 (658)
Q Consensus 421 l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i--~~l~~~-~~~--l~~L~~L~l~~~~~~~~~~--l~~l~~ 491 (658)
++ +|++|++++|.+..+++.. .+++|++|++++|.+ ..++.. +.. ..+|+.|++++|......| +..+++
T Consensus 328 l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (680)
T 1ziw_A 328 LK-CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406 (680)
T ss_dssp CT-TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CC-CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence 44 5555555555555444332 455555555555532 222221 111 2355566666653322223 677778
Q ss_pred ccEEEeecCCccc-cc-ccccCCCCCCEEeccCCCCCCcCCC-CC-CCCCCcEEeccCCCC--ccccCc---ccCCccEE
Q 047214 492 LETYLLDYTNFAC-VP-SSIQNFKYLSALSFEGCKSLRSFPS-NF-RFVCPVTINFSSCVN--LIEFPQ---ISGKITRL 562 (658)
Q Consensus 492 L~~L~l~~~~~~~-~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~-~~~~L~~L~l~~~~~--l~~~~~---~~~~L~~L 562 (658)
|+.|++++|.+.. +| ..+..+++|++|++++|. +..++. .+ .+++|+.|++++|.. +...|. .+.+|+.|
T Consensus 407 L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp CCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 8888888777743 44 457777888888888774 333332 22 678888888887642 234444 34678899
Q ss_pred Ecccccccccccc-ccCCCCCCEEecCCCccchhh----h----hhhcCCCCCcEEeccCCcCCccCC-----CCCCccc
Q 047214 563 YLGQSAIEEVPSS-IECLTDLEVLDLRDCKRLKRI----S----TRFCKLRSLVDLFLHGCLNLQSLP-----ALPLCLK 628 (658)
Q Consensus 563 ~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~----~----~~~~~l~~L~~L~l~~~~~l~~l~-----~l~~~L~ 628 (658)
++++|.++.++.. +..+++|+.|++++|...... | ..+.++++|+.|++++|. ++.+| .+++ |+
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~-L~ 563 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFE-LK 563 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT-CC
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccC-cc
Confidence 9999999988765 788999999999998743221 1 126789999999999975 55665 5788 99
Q ss_pred EEeccCCccccccCC----CCCCccEEeccCCCC
Q 047214 629 SLDLRDCKMLQSLPE----LPSCLEALDLTSCNM 658 (658)
Q Consensus 629 ~L~l~~~~~l~~i~~----~~~~L~~L~l~~~~~ 658 (658)
+|++++|. ++.+|. .+++|+.|++++|.+
T Consensus 564 ~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 564 IIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred eeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcC
Confidence 99999887 667775 357899999999975
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=4.4e-19 Score=198.31 Aligned_cols=129 Identities=17% Similarity=0.201 Sum_probs=90.9
Q ss_pred ceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC
Q 047214 361 AIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS 440 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~ 440 (658)
.++.+.+..+.+ ..++...|.++++|++|++++|.|.+ ..|..|..++ +|++|+|++|+++.+|.
T Consensus 53 ~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~------------i~~~~f~~L~-~L~~L~Ls~N~l~~l~~ 117 (635)
T 4g8a_A 53 STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQT------------IEDGAYQSLS-HLSTLILTGNPIQSLAL 117 (635)
T ss_dssp TCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCE------------ECTTTTTTCT-TCCEEECTTCCCCEECG
T ss_pred CCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCC------------cChhHhcCCC-CCCEEEccCCcCCCCCH
Confidence 455665555544 34566778888889999998888732 2345677777 88888888888887776
Q ss_pred CC--CCCCccEEEecCCCccccccc-ccCCCCccEEeccCCCcc-cccC--CCcCCCccEEEeecCCccc
Q 047214 441 NF--KPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCRHF-IDMS--YPSAPNLETYLLDYTNFAC 504 (658)
Q Consensus 441 ~~--~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~-~~~~--l~~l~~L~~L~l~~~~~~~ 504 (658)
.. ++.+|++|+|++|+++.+|.. ++++++|++|++++|... ...| ++.+++|++|++++|.+..
T Consensus 118 ~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 118 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 43 788888888888888877654 777888888888877421 1234 6777788888777765543
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.82 E-value=2.2e-21 Score=196.99 Aligned_cols=234 Identities=15% Similarity=0.161 Sum_probs=156.4
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCC
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLP 439 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp 439 (658)
..++.+.+..+.+. .+....|.++++|++|++++|.+.+ .+. +..++ +|++|++++|.++.+|
T Consensus 34 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~-------------~~~-~~~l~-~L~~L~Ls~n~l~~l~ 96 (317)
T 3o53_A 34 WNVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYE-------------TLD-LESLS-TLRTLDLNNNYVQELL 96 (317)
T ss_dssp GGCSEEECTTSCCC--CCCHHHHTTCTTCCEEECTTSCCEE-------------EEE-ETTCT-TCCEEECCSSEEEEEE
T ss_pred CCCCEEECcCCccC--cCCHHHhhCCCcCCEEECCCCcCCc-------------chh-hhhcC-CCCEEECcCCcccccc
Confidence 45666665555443 2455667777778888887777622 222 56666 7778888777777665
Q ss_pred CCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccccc-ccc-cCCCC
Q 047214 440 SNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVP-SSI-QNFKY 514 (658)
Q Consensus 440 ~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~-~~~-~~l~~ 514 (658)
. +++|++|++++|.+..++.. .+++|++|++++|. +..++ ++.+++|++|++++|.+..++ ..+ ..+++
T Consensus 97 ~---~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 97 V---GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (317)
T ss_dssp E---CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred C---CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence 3 36777788887777766543 35677888887774 33333 667777888888877776653 333 36777
Q ss_pred CCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCc---ccCCccEEEccccccccccccccCCCCCCEEecCCCc
Q 047214 515 LSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCK 591 (658)
Q Consensus 515 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~ 591 (658)
|++|++++| .++.++....+++|+.|++++|. +..+|. ..++|+.|++++|.++.+|..+..+++|+.|++++|+
T Consensus 171 L~~L~L~~N-~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 171 LEHLNLQYN-FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCEEECTTS-CCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCC
T ss_pred CCEEECCCC-cCcccccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCC
Confidence 888888776 46666665567777778777763 444433 2456777777777777777777777777777777777
Q ss_pred cc-hhhhhhhcCCCCCcEEeccCCcCCc
Q 047214 592 RL-KRISTRFCKLRSLVDLFLHGCLNLQ 618 (658)
Q Consensus 592 ~~-~~~~~~~~~l~~L~~L~l~~~~~l~ 618 (658)
.. ..++..+..+++|+.|++.+|+.++
T Consensus 249 ~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 249 FHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccCcCHHHHHhccccceEEECCCchhcc
Confidence 65 5666677777777777777655443
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=2.1e-19 Score=179.55 Aligned_cols=232 Identities=19% Similarity=0.206 Sum_probs=154.8
Q ss_pred cccceEEecccCCCCCCCC-C-CCCCccEEEecCCCcccc-cccccCCCCccEEeccCCCcccccC---CCcCCCccEEE
Q 047214 423 KNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQL-WEGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYL 496 (658)
Q Consensus 423 ~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~ 496 (658)
.++++|++++|.++.+|.. + .+++|++|++++|.+..+ |..+..+++|++|++++|..+..++ +..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 3778888888887777653 3 777888888888877766 4557777888888888775455553 77778888888
Q ss_pred eecCCcccc-cccccCCCCCCEEeccCCCCCCcCCCC--CCCCCCcEEeccCCCCccccCc----ccCCccEEEcccccc
Q 047214 497 LDYTNFACV-PSSIQNFKYLSALSFEGCKSLRSFPSN--FRFVCPVTINFSSCVNLIEFPQ----ISGKITRLYLGQSAI 569 (658)
Q Consensus 497 l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i 569 (658)
+++|.+..+ |..+..+++|++|++++| .+..++.. ..+++|+.|++++|. ++.++. ..++|+.|++++|.+
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 189 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRV 189 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCcc
Confidence 888777666 345677788888888876 45555542 367778888887763 444432 246777888888888
Q ss_pred ccc-cccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC--C-CCCcccEEeccCCccccccCC--
Q 047214 570 EEV-PSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP--A-LPLCLKSLDLRDCKMLQSLPE-- 643 (658)
Q Consensus 570 ~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~--~-l~~~L~~L~l~~~~~l~~i~~-- 643 (658)
..+ |..+..+++|+.|++++|......+..+..+++|+.|++++|+..-..+ . +.. ++.+..+.+......|.
T Consensus 190 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~-l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 190 AHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW-LQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH-HHHCCSEECCCBEEESGGG
T ss_pred cccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH-HHhcccccCccccCCchHh
Confidence 866 5567888888888888887554444567888888888888876322222 1 122 44444444443334443
Q ss_pred ---CCCCccEEeccCCC
Q 047214 644 ---LPSCLEALDLTSCN 657 (658)
Q Consensus 644 ---~~~~L~~L~l~~~~ 657 (658)
.+..++..++.+|.
T Consensus 269 ~g~~l~~l~~~~l~~C~ 285 (285)
T 1ozn_A 269 AGRDLKRLAANDLQGCA 285 (285)
T ss_dssp TTCBGGGSCGGGSCCC-
T ss_pred CCcChhhcCHHHhccCC
Confidence 23446666677763
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=1.2e-20 Score=194.89 Aligned_cols=243 Identities=19% Similarity=0.196 Sum_probs=194.6
Q ss_pred ceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC
Q 047214 361 AIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS 440 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~ 440 (658)
.++.+.+..+.+. .++...+.++++|++|++++|.+ ....|..+..++ +|++|++++|.++.+|.
T Consensus 53 ~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l------------~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~ 117 (353)
T 2z80_A 53 AVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGI------------NTIEEDSFSSLG-SLEHLDLSYNYLSNLSS 117 (353)
T ss_dssp TCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCC------------CEECTTTTTTCT-TCCEEECCSSCCSSCCH
T ss_pred cCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCcc------------CccCHhhcCCCC-CCCEEECCCCcCCcCCH
Confidence 5666766655553 45666889999999999999998 334567788888 99999999999999998
Q ss_pred C-C-CCCCccEEEecCCCcccccc--cccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccc-cccccCC
Q 047214 441 N-F-KPENLVELNLHFSKVEQLWE--GKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACV-PSSIQNF 512 (658)
Q Consensus 441 ~-~-~l~~L~~L~L~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~-~~~~~~l 512 (658)
. + .+++|++|++++|.+..+|. .+..+++|++|++++|..+..++ ++++++|++|++++|.+..+ |..+..+
T Consensus 118 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 197 (353)
T 2z80_A 118 SWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197 (353)
T ss_dssp HHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC
T ss_pred hHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc
Confidence 6 3 89999999999999999987 68899999999999997666664 89999999999999999776 6789999
Q ss_pred CCCCEEeccCCCCCCcCCCCC--CCCCCcEEeccCCCCccccC------cccCCccEEEccccccc-----cccccccCC
Q 047214 513 KYLSALSFEGCKSLRSFPSNF--RFVCPVTINFSSCVNLIEFP------QISGKITRLYLGQSAIE-----EVPSSIECL 579 (658)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~------~~~~~L~~L~l~~~~i~-----~~~~~~~~l 579 (658)
++|++|++++|. +..++... .+++|+.|++++|..-...+ .....++.+++..+.+. .+|..+..+
T Consensus 198 ~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l 276 (353)
T 2z80_A 198 QNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQI 276 (353)
T ss_dssp SEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTC
T ss_pred ccCCeecCCCCc-cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcc
Confidence 999999999984 56665533 48999999999975332111 12345666666655544 577788999
Q ss_pred CCCCEEecCCCccchhhhhh-hcCCCCCcEEeccCCcCCccC
Q 047214 580 TDLEVLDLRDCKRLKRISTR-FCKLRSLVDLFLHGCLNLQSL 620 (658)
Q Consensus 580 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~l 620 (658)
++|++|++++|. +..+|.. +..+++|+.|++++|+.....
T Consensus 277 ~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 277 SGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred cCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 999999999997 4577766 489999999999998744433
No 64
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=6e-18 Score=189.07 Aligned_cols=140 Identities=13% Similarity=0.139 Sum_probs=114.1
Q ss_pred ccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CC
Q 047214 367 LDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KP 444 (658)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l 444 (658)
++|.+..-..+|... -+++++|++++|.|.+ ..|..|..++ +|++|+|++|.|+.+|+. + ++
T Consensus 36 ~~c~~~~l~~vP~~l---p~~~~~LdLs~N~i~~------------l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L 99 (635)
T 4g8a_A 36 YQCMELNFYKIPDNL---PFSTKNLDLSFNPLRH------------LGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSL 99 (635)
T ss_dssp EECTTSCCSSCCSSS---CTTCCEEECTTSCCCE------------ECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTC
T ss_pred EECCCCCcCccCCCC---CcCCCEEEeeCCCCCC------------CCHHHHhCCC-CCCEEECCCCcCCCcChhHhcCC
Confidence 445544333344322 1489999999999832 2346788998 999999999999999875 4 89
Q ss_pred CCccEEEecCCCccccccc-ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccc--ccccccCCCCCCEE
Q 047214 445 ENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFAC--VPSSIQNFKYLSAL 518 (658)
Q Consensus 445 ~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L 518 (658)
++|++|+|++|+++.+|.. +.++++|++|++++| .+..+| ++++++|++|++++|.+.. +|..+..+++|++|
T Consensus 100 ~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 178 (635)
T 4g8a_A 100 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 178 (635)
T ss_dssp TTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred CCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhh
Confidence 9999999999999999875 799999999999999 456665 8999999999999999865 46778889999999
Q ss_pred eccCC
Q 047214 519 SFEGC 523 (658)
Q Consensus 519 ~l~~~ 523 (658)
++++|
T Consensus 179 ~L~~N 183 (635)
T 4g8a_A 179 DLSSN 183 (635)
T ss_dssp ECCSS
T ss_pred cccCc
Confidence 98776
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=2e-19 Score=182.52 Aligned_cols=241 Identities=12% Similarity=0.093 Sum_probs=196.9
Q ss_pred CchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCc
Q 047214 378 DSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKV 457 (658)
Q Consensus 378 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i 457 (658)
....+..+++|+.|++++|.+.+ ..|..+..++ +|++|++++|.+..+++...+++|++|++++|.+
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~------------~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQ------------ISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV 92 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCC------------CCHHHHTTCT-TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEE
T ss_pred HHHHhccCCCCCEEECcCCccCc------------CCHHHhhCCC-cCCEEECCCCcCCcchhhhhcCCCCEEECcCCcc
Confidence 34556677899999999999833 2345677888 9999999999998777655899999999999999
Q ss_pred ccccccccCCCCccEEeccCCCcccccCCCcCCCccEEEeecCCcccccc-cccCCCCCCEEeccCCCCCCcCC-CCC--
Q 047214 458 EQLWEGKKEAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFACVPS-SIQNFKYLSALSFEGCKSLRSFP-SNF-- 533 (658)
Q Consensus 458 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~-~~~-- 533 (658)
+.++. .++|++|++++| .+..++...+++|++|++++|.+..+++ .+..+++|++|++++| .+..++ ..+
T Consensus 93 ~~l~~----~~~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 166 (317)
T 3o53_A 93 QELLV----GPSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAA 166 (317)
T ss_dssp EEEEE----CTTCCEEECCSS-CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGG
T ss_pred ccccC----CCCcCEEECCCC-ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhh
Confidence 88764 389999999999 4566665568899999999999988754 6888999999999998 455543 322
Q ss_pred CCCCCcEEeccCCCCccccCc--ccCCccEEEccccccccccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEec
Q 047214 534 RFVCPVTINFSSCVNLIEFPQ--ISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFL 611 (658)
Q Consensus 534 ~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 611 (658)
.+++|+.|++++|. +..++. .+++|+.|++++|.++.+|..+..+++|++|++++|. +..+|..+..+++|+.|++
T Consensus 167 ~l~~L~~L~L~~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l 244 (317)
T 3o53_A 167 SSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDL 244 (317)
T ss_dssp GTTTCCEEECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEEC
T ss_pred ccCcCCEEECCCCc-CcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEc
Confidence 58999999999985 444443 3689999999999999999889999999999999997 5578888999999999999
Q ss_pred cCCcCC-ccCC----CCCCcccEEeccCCccccc
Q 047214 612 HGCLNL-QSLP----ALPLCLKSLDLRDCKMLQS 640 (658)
Q Consensus 612 ~~~~~l-~~l~----~l~~~L~~L~l~~~~~l~~ 640 (658)
++|+.. ..++ .++. |+.|++.+|..++.
T Consensus 245 ~~N~~~~~~~~~~~~~~~~-L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 245 RGNGFHCGTLRDFFSKNQR-VQTVAKQTVKKLTG 277 (317)
T ss_dssp TTCCCBHHHHHHHHHTCHH-HHHHHHHHHHHHHS
T ss_pred cCCCccCcCHHHHHhcccc-ceEEECCCchhccC
Confidence 998744 2333 6788 99999987765543
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.79 E-value=6.3e-20 Score=185.72 Aligned_cols=229 Identities=20% Similarity=0.155 Sum_probs=132.7
Q ss_pred ccceEEecccCCCCCCCCC-CCCCccEEEecCCCccc--cccccc-------CCCCccEEeccCCCcccccC--C--CcC
Q 047214 424 NLRYLHWDKYPLRTLPSNF-KPENLVELNLHFSKVEQ--LWEGKK-------EAFKLKSINLSHCRHFIDMS--Y--PSA 489 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~--l~~~~~-------~l~~L~~L~l~~~~~~~~~~--l--~~l 489 (658)
+|++|++++|.+ .+|..+ .. |+.|+|++|.+.. +|..+. .+++|++|++++|.....+| + +.+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 455555555555 444433 11 5555555555532 333332 45556666666554333344 2 556
Q ss_pred CCccEEEeecCCcccccccccCC-----CCCCEEeccCCCCCCcCC-CC-CCCCCCcEEeccCCCCccc-------cCcc
Q 047214 490 PNLETYLLDYTNFACVPSSIQNF-----KYLSALSFEGCKSLRSFP-SN-FRFVCPVTINFSSCVNLIE-------FPQI 555 (658)
Q Consensus 490 ~~L~~L~l~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~~~-~~-~~~~~L~~L~l~~~~~l~~-------~~~~ 555 (658)
++|++|++++|.+..+|..+..+ ++|++|++++| .+..++ .. .++++|+.|++++|...+. .+..
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 66666666666555555444444 56666666655 333333 22 2556666666666543221 1134
Q ss_pred cCCccEEEcccccccccc---cc-ccCCCCCCEEecCCCccchhhh-hhhcCCCCCcEEeccCCcCCccCC-CCCCcccE
Q 047214 556 SGKITRLYLGQSAIEEVP---SS-IECLTDLEVLDLRDCKRLKRIS-TRFCKLRSLVDLFLHGCLNLQSLP-ALPLCLKS 629 (658)
Q Consensus 556 ~~~L~~L~l~~~~i~~~~---~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-~l~~~L~~ 629 (658)
+++|++|++++|.++.++ .. +..+++|++|++++|......| ..+..+++|+.|++++|. ++.+| .++.+|++
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~ 278 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSV 278 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceE
Confidence 466777777777777433 22 4577888888888887544443 335567888888888865 55666 33323888
Q ss_pred EeccCCccccccCC--CCCCccEEeccCCCC
Q 047214 630 LDLRDCKMLQSLPE--LPSCLEALDLTSCNM 658 (658)
Q Consensus 630 L~l~~~~~l~~i~~--~~~~L~~L~l~~~~~ 658 (658)
|++++|. ++.+|. .+++|++|++++|++
T Consensus 279 L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 279 LDLSYNR-LDRNPSPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp EECCSSC-CCSCCCTTTSCEEEEEECTTCTT
T ss_pred EECCCCC-CCCChhHhhCCCCCEEeccCCCC
Confidence 8888886 566665 567788889888875
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.9e-19 Score=191.93 Aligned_cols=228 Identities=15% Similarity=0.160 Sum_probs=126.4
Q ss_pred ceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC
Q 047214 361 AIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS 440 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~ 440 (658)
.++.+.+..+.+. .++...|..+++|++|++++|.+.+ ..| +..++ +|++|++++|.++.+|.
T Consensus 35 ~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~------------~~~--l~~l~-~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 35 NVKELDLSGNPLS--QISAADLAPFTKLELLNLSSNVLYE------------TLD--LESLS-TLRTLDLNNNYVQELLV 97 (487)
T ss_dssp GCCEEECCSSCCC--CCCGGGGTTCTTCCEEECTTSCCEE------------EEE--CTTCT-TCCEEECCSSEEEEEEE
T ss_pred CccEEEeeCCcCC--CCCHHHHhCCCCCCEEEeeCCCCCC------------Ccc--cccCC-CCCEEEecCCcCCCCCC
Confidence 4555555444432 2344556666666666666666521 122 55555 66666666666665553
Q ss_pred CCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcccc-ccccc-CCCCCC
Q 047214 441 NFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFACV-PSSIQ-NFKYLS 516 (658)
Q Consensus 441 ~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~-~~~~~-~l~~L~ 516 (658)
. ++|++|++++|.+..++.. .+++|+.|++++|......| ++.+++|+.|++++|.+..+ |..+. .+++|+
T Consensus 98 ~---~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 G---PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp C---TTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred C---CCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 2 5666666666666655442 34566666666663222223 55666666666666666543 33333 566666
Q ss_pred EEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCc---ccCCccEEEccccccccccccccCCCCCCEEecCCCccc
Q 047214 517 ALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQ---ISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRL 593 (658)
Q Consensus 517 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~ 593 (658)
+|++++| .++.++....+++|+.|++++|. +..+|. .+++|+.|++++|.+..+|..+..+++|+.|++++|+..
T Consensus 173 ~L~Ls~N-~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 173 HLNLQYN-FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EEECTTS-CCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred EEecCCC-ccccccccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 6666665 35555555556666666666653 333332 234555666666666666666666666666666666544
Q ss_pred -hhhhhhhcCCCCCcEEecc
Q 047214 594 -KRISTRFCKLRSLVDLFLH 612 (658)
Q Consensus 594 -~~~~~~~~~l~~L~~L~l~ 612 (658)
..+|..+..++.|+.+.+.
T Consensus 251 c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 251 CGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred CcchHHHHHhCCCCcEEecc
Confidence 3455555556666555554
No 68
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=3.2e-18 Score=176.12 Aligned_cols=221 Identities=23% Similarity=0.310 Sum_probs=101.4
Q ss_pred ecccCCCCCCCCCCCCCccEEEecCCCccccccc-ccCCCCccEEeccCCCcccccC---CCcCCCccEE-EeecCCccc
Q 047214 430 WDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETY-LLDYTNFAC 504 (658)
Q Consensus 430 l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L-~l~~~~~~~ 504 (658)
.++++++++|..+ ..++++|+|++|+|+.+|.. +.++++|++|++++|.....+| |.++++|.++ .+.+|++..
T Consensus 16 C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 16 CQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp EESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred ecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc
Confidence 3333444444333 13344444444444444432 3444444444444443223232 3444443332 222244444
Q ss_pred cc-ccccCCCCCCEEeccCCCCCCcCCCCC--CCCCCcEEeccCCCCccccCcc-----cCCccEEEccccccccccccc
Q 047214 505 VP-SSIQNFKYLSALSFEGCKSLRSFPSNF--RFVCPVTINFSSCVNLIEFPQI-----SGKITRLYLGQSAIEEVPSSI 576 (658)
Q Consensus 505 ~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~-----~~~L~~L~l~~~~i~~~~~~~ 576 (658)
++ ..+..+++|++|++++| .+..++... ...++..+++.++..+..++.. ...++.|++++|.++.+|...
T Consensus 95 l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~ 173 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA 173 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS
T ss_pred cCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh
Confidence 42 23444444444444443 333333322 2333444444444444333321 123445556666666555554
Q ss_pred cCCCCCCEEecCCCccchhhhh-hhcCCCCCcEEeccCCcCCccCC--CCCCcccEEeccCCccccccCC--CCCCccEE
Q 047214 577 ECLTDLEVLDLRDCKRLKRIST-RFCKLRSLVDLFLHGCLNLQSLP--ALPLCLKSLDLRDCKMLQSLPE--LPSCLEAL 651 (658)
Q Consensus 577 ~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~l~--~l~~~L~~L~l~~~~~l~~i~~--~~~~L~~L 651 (658)
....+|++|+++++..+..+|. .+.++++|++|++++|. ++.+| .+.+ |+.|.+.+|..++.+|. .+++|+.+
T Consensus 174 f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~-L~~L~~l~~~~l~~lP~l~~l~~L~~l 251 (350)
T 4ay9_X 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLEN-LKKLRARSTYNLKKLPTLEKLVALMEA 251 (350)
T ss_dssp STTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTT-CCEEECTTCTTCCCCCCTTTCCSCCEE
T ss_pred ccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhcc-chHhhhccCCCcCcCCCchhCcChhhC
Confidence 4555566666655444555543 34556666666666543 55555 2444 66666666655666553 44555555
Q ss_pred ecc
Q 047214 652 DLT 654 (658)
Q Consensus 652 ~l~ 654 (658)
++.
T Consensus 252 ~l~ 254 (350)
T 4ay9_X 252 SLT 254 (350)
T ss_dssp ECS
T ss_pred cCC
Confidence 554
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.78 E-value=1.6e-17 Score=165.84 Aligned_cols=208 Identities=21% Similarity=0.304 Sum_probs=171.6
Q ss_pred cceEEecccCCCCCCCCCCCCCccEEEecCCCcccccc-cccCCCCccEEeccCCCccccc-C--CCcCCCccEEEeecC
Q 047214 425 LRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWE-GKKEAFKLKSINLSHCRHFIDM-S--YPSAPNLETYLLDYT 500 (658)
Q Consensus 425 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~--l~~l~~L~~L~l~~~ 500 (658)
-+.++.++++++.+|... ..+|+.|++++|.+..++. .+..+++|++|++++|. +..+ | ++.+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCC
Confidence 367788888999998765 4699999999999998875 48899999999999994 4555 4 899999999999998
Q ss_pred C-cccc-cccccCCCCCCEEeccCCCCCCcCCC-CC-CCCCCcEEeccCCCCccccCc----ccCCccEEEccccccccc
Q 047214 501 N-FACV-PSSIQNFKYLSALSFEGCKSLRSFPS-NF-RFVCPVTINFSSCVNLIEFPQ----ISGKITRLYLGQSAIEEV 572 (658)
Q Consensus 501 ~-~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~-~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~~~ 572 (658)
. +..+ |..+..+++|++|++++| .+..++. .+ ++++|++|++++|. +..++. ..++|+.|++++|.++.+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccccc
Confidence 7 8877 567899999999999998 4555543 33 79999999999975 444442 357889999999999988
Q ss_pred ccc-ccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC-----CCCCcccEEeccCCccc
Q 047214 573 PSS-IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP-----ALPLCLKSLDLRDCKML 638 (658)
Q Consensus 573 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-----~l~~~L~~L~l~~~~~l 638 (658)
+.. +..+++|++|++++|......|..+..+++|+.|++++|. +..++ .+++ |++|++++|+..
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~-L~~L~l~~N~~~ 238 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRA-LQYLRLNDNPWV 238 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTT-CCEEECCSSCEE
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcc-cCEEeccCCCcc
Confidence 874 8889999999999998666668888999999999999975 55555 5788 999999998844
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.5e-18 Score=186.48 Aligned_cols=229 Identities=13% Similarity=0.080 Sum_probs=188.0
Q ss_pred CCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccccc
Q 047214 384 NMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEG 463 (658)
Q Consensus 384 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~ 463 (658)
.+++|+.|++++|.+.+ ..|..+..++ +|++|+|++|.+..+++...+++|++|+|++|.+..+|..
T Consensus 32 ~~~~L~~L~Ls~n~l~~------------~~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~ 98 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQ------------ISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG 98 (487)
T ss_dssp TGGGCCEEECCSSCCCC------------CCGGGGTTCT-TCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC
T ss_pred cCCCccEEEeeCCcCCC------------CCHHHHhCCC-CCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC
Confidence 34589999999999833 3456788888 9999999999999777655999999999999999988753
Q ss_pred ccCCCCccEEeccCCCcccccCCCcCCCccEEEeecCCcccc-cccccCCCCCCEEeccCCCCCCcCCCCC--CCCCCcE
Q 047214 464 KKEAFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFACV-PSSIQNFKYLSALSFEGCKSLRSFPSNF--RFVCPVT 540 (658)
Q Consensus 464 ~~~l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~ 540 (658)
++|++|++++| .+..++...+++|+.|++++|.+..+ |..+..+++|++|++++|......|..+ .+++|+.
T Consensus 99 ----~~L~~L~L~~N-~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~ 173 (487)
T 3oja_A 99 ----PSIETLHAANN-NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173 (487)
T ss_dssp ----TTCCEEECCSS-CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCE
T ss_pred ----CCcCEEECcCC-cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccE
Confidence 89999999999 55666655678999999999999887 4578899999999999984433344433 6899999
Q ss_pred EeccCCCCccccCc--ccCCccEEEccccccccccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCC-
Q 047214 541 INFSSCVNLIEFPQ--ISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNL- 617 (658)
Q Consensus 541 L~l~~~~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l- 617 (658)
|++++|. +..+|. .+++|+.|++++|.++.+|..+..+++|+.|++++|. +..+|..+..+++|+.|++++|+..
T Consensus 174 L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 174 LNLQYNF-IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp EECTTSC-CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCH
T ss_pred EecCCCc-cccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcC
Confidence 9999985 444443 3689999999999999999889999999999999998 4568888999999999999998744
Q ss_pred ccCC----CCCCcccEEecc
Q 047214 618 QSLP----ALPLCLKSLDLR 633 (658)
Q Consensus 618 ~~l~----~l~~~L~~L~l~ 633 (658)
..+| .++. |+.+++.
T Consensus 252 ~~~~~~~~~l~~-L~~l~~~ 270 (487)
T 3oja_A 252 GTLRDFFSKNQR-VQTVAKQ 270 (487)
T ss_dssp HHHHHHHTTCHH-HHHHHHH
T ss_pred cchHHHHHhCCC-CcEEecc
Confidence 2333 5677 7777775
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.8e-17 Score=165.42 Aligned_cols=193 Identities=18% Similarity=0.241 Sum_probs=157.2
Q ss_pred hhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecCCCc
Q 047214 380 GAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKV 457 (658)
Q Consensus 380 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i 457 (658)
..++++++++.++++++.+ ..+|..+. +++++|++++|.+..+++. + .+.+|++|+|++|.+
T Consensus 4 C~~~~l~~l~~l~~~~~~l-------------~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l 67 (290)
T 1p9a_G 4 CEVSKVASHLEVNCDKRNL-------------TALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67 (290)
T ss_dssp SEEECSTTCCEEECTTSCC-------------SSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC
T ss_pred ccccccCCccEEECCCCCC-------------CcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc
Confidence 3567889999999999987 34665543 3899999999999877643 3 889999999999999
Q ss_pred ccccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCccccc-ccccCCCCCCEEeccCCCCCCcCCCCC-
Q 047214 458 EQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFACVP-SSIQNFKYLSALSFEGCKSLRSFPSNF- 533 (658)
Q Consensus 458 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~- 533 (658)
+.++.. ..+++|++|++++| .+..+| +..+++|++|++++|.+..+| ..+..+++|++|++++| .++.+|...
T Consensus 68 ~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~ 144 (290)
T 1p9a_G 68 TKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLL 144 (290)
T ss_dssp CEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTT
T ss_pred CcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhc
Confidence 988765 78899999999998 566777 888999999999999998887 45888999999999987 566776643
Q ss_pred -CCCCCcEEeccCCCCccccCc----ccCCccEEEccccccccccccccCCCCCCEEecCCCcc
Q 047214 534 -RFVCPVTINFSSCVNLIEFPQ----ISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKR 592 (658)
Q Consensus 534 -~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~ 592 (658)
.+++|+.|++++|. +..+|. .+++|+.|++++|.+..+|..+..+++|+.|++++|+.
T Consensus 145 ~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 145 TPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred ccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 78899999998874 555654 34678899999999998888888888899999988764
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=9.8e-18 Score=169.06 Aligned_cols=189 Identities=14% Similarity=0.230 Sum_probs=128.1
Q ss_pred hcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccc
Q 047214 382 FTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLW 461 (658)
Q Consensus 382 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~ 461 (658)
+..+++|+.|+++++.+. .+| .+..++ +|++|++++|.+..+|....+++|++|++++|.+..++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-------------~l~-~~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-------------TIE-GVQYLN-NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-------------CCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG
T ss_pred HHHcCCcCEEEeeCCCcc-------------Cch-hhhccC-CCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch
Confidence 345678888888888762 244 466666 88888888888888777447888888888888887765
Q ss_pred ccccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcE
Q 047214 462 EGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVT 540 (658)
Q Consensus 462 ~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 540 (658)
.+..+++|++|++++| .+..++ +..+++|++|++++|.+..++. +..+++|++|++++| .+..++....+++|+.
T Consensus 102 -~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~ 177 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTST-QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTT 177 (308)
T ss_dssp -GGTTCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCE
T ss_pred -hhcCCCCCCEEECCCC-CCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCE
Confidence 5777888888888887 455666 7788888888888888877765 777888888888877 5555555446666666
Q ss_pred EeccCCCCccccCc--ccCCccEEEccccccccccccccCCCCCCEEecCCCc
Q 047214 541 INFSSCVNLIEFPQ--ISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCK 591 (658)
Q Consensus 541 L~l~~~~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~ 591 (658)
|++++|. +..++. .+++|+.|++++|.+..++. +..+++|+.|++++|+
T Consensus 178 L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 178 LKADDNK-ISDISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp EECCSSC-CCCCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEE
T ss_pred EECCCCc-cCcChhhcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCe
Confidence 6666653 222221 23455555555555555543 4555555555555554
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=9.1e-18 Score=162.87 Aligned_cols=187 Identities=16% Similarity=0.147 Sum_probs=82.4
Q ss_pred CccEEEecCCCcccccc-cccCCCCccEEeccCCCcccccC---CCcCCCccEEEeec-CCcccccc-cccCCCCCCEEe
Q 047214 446 NLVELNLHFSKVEQLWE-GKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDY-TNFACVPS-SIQNFKYLSALS 519 (658)
Q Consensus 446 ~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~-~~~~~~~~-~~~~l~~L~~L~ 519 (658)
+|++|++++|.++.+|. .+..+++|++|++++|..+..++ +.++++|++|++++ |.+..++. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44455555555544444 24445555555555543233333 44555555555554 55554442 344555555555
Q ss_pred ccCCCCCCcCCCCCCCCCCc---EEeccCCCCccccCc----ccCCcc-EEEccccccccccccccCCCCCCEEecCCCc
Q 047214 520 FEGCKSLRSFPSNFRFVCPV---TINFSSCVNLIEFPQ----ISGKIT-RLYLGQSAIEEVPSSIECLTDLEVLDLRDCK 591 (658)
Q Consensus 520 l~~~~~l~~~~~~~~~~~L~---~L~l~~~~~l~~~~~----~~~~L~-~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~ 591 (658)
+++| .++.+|....+++|+ .|++++|..+..+|. ...+|+ .|++++|.++.+|......++|++|++++|+
T Consensus 112 l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~ 190 (239)
T 2xwt_C 112 IFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190 (239)
T ss_dssp EEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCT
T ss_pred CCCC-CCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCC
Confidence 5554 334444433333333 444444322222221 123344 4444445555444432223455555555553
Q ss_pred cchhh-hhhhcCC-CCCcEEeccCCcCCccCC--CCCCcccEEeccCC
Q 047214 592 RLKRI-STRFCKL-RSLVDLFLHGCLNLQSLP--ALPLCLKSLDLRDC 635 (658)
Q Consensus 592 ~~~~~-~~~~~~l-~~L~~L~l~~~~~l~~l~--~l~~~L~~L~l~~~ 635 (658)
.+..+ +..+.++ ++|+.|++++|+ ++.+| .+++ |+.|++.++
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~~~~~-L~~L~l~~~ 236 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSKGLEH-LKELIARNT 236 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCTTCTT-CSEEECTTC
T ss_pred CcccCCHHHhhccccCCcEEECCCCc-cccCChhHhcc-CceeeccCc
Confidence 23333 2234444 445555554432 33333 2343 444444443
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=3.3e-17 Score=163.45 Aligned_cols=192 Identities=21% Similarity=0.248 Sum_probs=153.3
Q ss_pred CCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccc-ccccCCCCccEEeccCCCcccccC-CCcCCCccEE
Q 047214 418 LDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLW-EGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETY 495 (658)
Q Consensus 418 ~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L 495 (658)
+.+++ +++.+++.+++++.+|..+. .+++.|+|++|.+..++ ..+..+++|++|++++| .+..++ .+.+++|++|
T Consensus 6 ~~~l~-~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVA-SHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECST-TCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECCSCCTTCCEE
T ss_pred ccccC-CccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCCCCCCcCCEE
Confidence 34555 78888999989998887764 68889999999888765 45888899999999988 466666 7788889999
Q ss_pred EeecCCcccccccccCCCCCCEEeccCCCCCCcCCCC--CCCCCCcEEeccCCCCccccCc----ccCCccEEEcccccc
Q 047214 496 LLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSN--FRFVCPVTINFSSCVNLIEFPQ----ISGKITRLYLGQSAI 569 (658)
Q Consensus 496 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i 569 (658)
++++|.+..+|..+..+++|++|++++| .++.++.. .++++|+.|++++|. +..+|. ..++|+.|++++|.+
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcC
Confidence 9999888888888888899999999887 56666642 378899999998874 444543 346788999999999
Q ss_pred cccccc-ccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCc
Q 047214 570 EEVPSS-IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCL 615 (658)
Q Consensus 570 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 615 (658)
+.+|.. +..+++|++|++++|. +..+|..+..+++|+.|.+++|+
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred CccCHHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 888875 5778899999999887 55778777788889999998876
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=5.1e-17 Score=161.33 Aligned_cols=192 Identities=22% Similarity=0.252 Sum_probs=111.0
Q ss_pred ccceEEecccCCCCCCCC-C-CCCCccEEEecCCCcccccc-cccCCCCccEEeccCCCcccccC---CCcCCCccEEEe
Q 047214 424 NLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQLWE-GKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLL 497 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l 497 (658)
++++|++++|.++.++.. + .+++|++|++++|.+..++. .+..+++|++|++++|. +..++ +.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEEC
Confidence 667777777766666542 2 56666666666666665554 35666666666666663 22222 556666666666
Q ss_pred ecCCcccccc-cccCCCCCCEEeccCCCCCCc--CCCCCCCCCCcEEeccCCCCccccCcccCCccEEEccccccccccc
Q 047214 498 DYTNFACVPS-SIQNFKYLSALSFEGCKSLRS--FPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPS 574 (658)
Q Consensus 498 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~ 574 (658)
.+|.+..++. .+..+++|++|++++| .+.. +|..+ ...++|+.|++++|.++.++.
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~--------------------~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYF--------------------SNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGG--------------------GGCTTCCEEECCSSCCCEECG
T ss_pred CCCCccccCchhcccCCCCCEEECcCC-ccceecCchhh--------------------ccCCCCCEEECCCCCCCcCCH
Confidence 6665555543 4555666666666555 2222 12211 122455556666666665543
Q ss_pred -cccCCCCCC----EEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC-----CCCCcccEEeccCCccccc
Q 047214 575 -SIECLTDLE----VLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP-----ALPLCLKSLDLRDCKMLQS 640 (658)
Q Consensus 575 -~~~~l~~L~----~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~-----~l~~~L~~L~l~~~~~l~~ 640 (658)
.+..+++|+ +|++++|.. ..++.......+|+.|++++|. ++.+| .+++ |++|++++|+....
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~-L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTS-LQKIWLHTNPWDCS 239 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCC-CEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCS-CCEEECCSSCBCCC
T ss_pred HHhhhhhhccccceeeecCCCcc-cccCccccCCCcccEEECCCCc-eeecCHhHhccccc-ccEEEccCCccccc
Confidence 344444444 788888773 3444444445578888888865 55554 4677 88888887774333
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.5e-17 Score=167.74 Aligned_cols=192 Identities=16% Similarity=0.178 Sum_probs=149.0
Q ss_pred CcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC-CCcCCCccEEEee
Q 047214 420 YLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLD 498 (658)
Q Consensus 420 ~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~ 498 (658)
.++ +|++|++++|.++.+|....+++|++|++++|.+..++. +..+++|++|++++|. +..++ +..+++|++|+++
T Consensus 39 ~l~-~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLD-GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECT
T ss_pred HcC-CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECC
Confidence 455 888888888888888754478888888888888888877 8888888888888884 66677 8888888888888
Q ss_pred cCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCc--ccCCccEEEccccccccccccc
Q 047214 499 YTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQ--ISGKITRLYLGQSAIEEVPSSI 576 (658)
Q Consensus 499 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~~~i~~~~~~~ 576 (658)
+|.+..++. +..+++|++|++++| .++.++....+++|+.|++++|. +..++. .+++|+.|++++|.++.++. +
T Consensus 116 ~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l 191 (308)
T 1h6u_A 116 STQITDVTP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQ-VSDLTPLANLSKLTTLKADDNKISDISP-L 191 (308)
T ss_dssp TSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCCCCchh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCc-CCCChhhcCCCCCCEEECCCCccCcChh-h
Confidence 888887764 888888888888887 56666666678888888888873 444442 35678888888888887776 7
Q ss_pred cCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC
Q 047214 577 ECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP 621 (658)
Q Consensus 577 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 621 (658)
..+++|++|++++|.. ..++ .+..+++|+.|++++|+ +...|
T Consensus 192 ~~l~~L~~L~L~~N~l-~~~~-~l~~l~~L~~L~l~~N~-i~~~~ 233 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQI-SDVS-PLANTSNLFIVTLTNQT-ITNQP 233 (308)
T ss_dssp GGCTTCCEEECTTSCC-CBCG-GGTTCTTCCEEEEEEEE-EECCC
T ss_pred cCCCCCCEEEccCCcc-Cccc-cccCCCCCCEEEccCCe-eecCC
Confidence 7888888888888874 3444 37788888888888876 34433
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=2.9e-17 Score=163.09 Aligned_cols=206 Identities=13% Similarity=0.139 Sum_probs=143.8
Q ss_pred ccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CC
Q 047214 367 LDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KP 444 (658)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l 444 (658)
+++.......++... .++|++|++++|.+. ...+..+..++ +|++|++++|.+..++.. + .+
T Consensus 12 ~~c~~~~l~~ip~~l---~~~l~~L~ls~n~l~------------~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l 75 (276)
T 2z62_A 12 YQCMELNFYKIPDNL---PFSTKNLDLSFNPLR------------HLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSL 75 (276)
T ss_dssp EECTTSCCSSCCSSS---CTTCCEEECTTCCCC------------EECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTC
T ss_pred EEecCCCccccCCCC---CCCccEEECCCCccc------------ccCHhHhcccc-CCcEEECCCCcCCccCHHHccCC
Confidence 445544443444422 257999999999983 23345788888 999999999999988874 3 89
Q ss_pred CCccEEEecCCCccccc-ccccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccc--ccccccCCCCCCEE
Q 047214 445 ENLVELNLHFSKVEQLW-EGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFAC--VPSSIQNFKYLSAL 518 (658)
Q Consensus 445 ~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~L 518 (658)
++|++|++++|.+..++ ..+..+++|++|++++|. +..++ ++.+++|++|++++|.+.. +|..+..+++|++|
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L 154 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred cCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEE
Confidence 99999999999999877 458899999999999995 44444 8899999999999999976 67889999999999
Q ss_pred eccCCCCCCcCCCC-C-CCCCCc----EEeccCCCCccccCcc---cCCccEEEcccccccccccc-ccCCCCCCEEecC
Q 047214 519 SFEGCKSLRSFPSN-F-RFVCPV----TINFSSCVNLIEFPQI---SGKITRLYLGQSAIEEVPSS-IECLTDLEVLDLR 588 (658)
Q Consensus 519 ~l~~~~~l~~~~~~-~-~~~~L~----~L~l~~~~~l~~~~~~---~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~ 588 (658)
++++| .++.++.. + .+++|+ .|++++|. +..++.. ..+|+.|++++|.++.+|.. +..+++|++|+++
T Consensus 155 ~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 155 DLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp ECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred ECCCC-CCCcCCHHHhhhhhhccccceeeecCCCc-ccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence 99998 45554431 1 233333 55555543 2222211 12455555555555555443 3455555555555
Q ss_pred CCc
Q 047214 589 DCK 591 (658)
Q Consensus 589 ~~~ 591 (658)
+|+
T Consensus 233 ~N~ 235 (276)
T 2z62_A 233 TNP 235 (276)
T ss_dssp SSC
T ss_pred CCc
Confidence 544
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=1.3e-17 Score=168.56 Aligned_cols=192 Identities=19% Similarity=0.141 Sum_probs=132.2
Q ss_pred CCCCCcEEEeecCcccCcchhhhcccCceecCCCC--CCcccccceEEecccCCCCCCCCC-CC-----CCccEEEecCC
Q 047214 384 NMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGL--DYLPKNLRYLHWDKYPLRTLPSNF-KP-----ENLVELNLHFS 455 (658)
Q Consensus 384 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~--~~l~~~L~~L~l~~~~l~~lp~~~-~l-----~~L~~L~L~~~ 455 (658)
++++|++|++++|.+. ..+|..+ ..++ +|++|++++|.+..+|..+ .+ ++|++|++++|
T Consensus 93 ~l~~L~~L~L~~n~l~------------~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N 159 (312)
T 1wwl_A 93 GISGLQELTLENLEVT------------GTAPPPLLEATGP-DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159 (312)
T ss_dssp TTSCCCEEEEEEEBCB------------SCCCCCSSSCCSC-CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC
T ss_pred CcCCccEEEccCCccc------------chhHHHHHHhcCC-CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC
Confidence 6788999999999873 3467765 6777 8999999999888877554 33 88999999999
Q ss_pred Cccccc-ccccCCCCccEEeccCCCcccc--cC--C--CcCCCccEEEeecCCccccc---c-cccCCCCCCEEeccCCC
Q 047214 456 KVEQLW-EGKKEAFKLKSINLSHCRHFID--MS--Y--PSAPNLETYLLDYTNFACVP---S-SIQNFKYLSALSFEGCK 524 (658)
Q Consensus 456 ~i~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~--l--~~l~~L~~L~l~~~~~~~~~---~-~~~~l~~L~~L~l~~~~ 524 (658)
.+..++ ..++.+++|++|++++|..... ++ + +.+++|++|++++|.+..++ . .+..+++|++|++++|.
T Consensus 160 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp SCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred CCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 888776 5688888999999998864433 22 3 78888999999888887443 2 34577888899888874
Q ss_pred CCCcCC---CCCCCCCCcEEeccCCCCccccCccc-CCccEEEccccccccccccccCCCCCCEEecCCCc
Q 047214 525 SLRSFP---SNFRFVCPVTINFSSCVNLIEFPQIS-GKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCK 591 (658)
Q Consensus 525 ~l~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~ 591 (658)
+...+ ....+++|+.|++++|. ++.+|..+ ++|+.|++++|.++.+|. +..+++|++|++++|+
T Consensus 240 -l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 240 -LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLPAKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp -CCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCCSEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCT
T ss_pred -CCcccchhhhhhcCCCCEEECCCCc-cChhhhhccCCceEEECCCCCCCCChh-HhhCCCCCEEeccCCC
Confidence 44432 22245666677666653 33444432 355566666666555544 5555555555555554
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.73 E-value=1.8e-16 Score=156.78 Aligned_cols=187 Identities=21% Similarity=0.334 Sum_probs=133.4
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecCCCccccccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQLWEG 463 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~~ 463 (658)
.+++.++++++.+ ..+|..+. .++++|++++|.+..+|.. + .+++|++|+|++|.++.+|..
T Consensus 16 ~~~~~l~~~~~~l-------------~~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~ 79 (270)
T 2o6q_A 16 NNKNSVDCSSKKL-------------TAIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79 (270)
T ss_dssp TTTTEEECTTSCC-------------SSCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred CCCCEEEccCCCC-------------CccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence 4678888888887 33555443 3889999999999888864 3 788999999999988888776
Q ss_pred -ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccccc-cccCCCCCCEEeccCCCCCCcCCCC--CCCC
Q 047214 464 -KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPS-SIQNFKYLSALSFEGCKSLRSFPSN--FRFV 536 (658)
Q Consensus 464 -~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~ 536 (658)
+..+++|++|++++|. +..+| +..+++|++|++++|.+..++. .+..+++|++|++++| .+..++.. ..++
T Consensus 80 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLT 157 (270)
T ss_dssp TTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred hhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCc
Confidence 4778899999998884 55555 6788889999998888887764 4678888999988887 56666653 3577
Q ss_pred CCcEEeccCCCCccccCc----ccCCccEEEcccccccccccc-ccCCCCCCEEecCCCc
Q 047214 537 CPVTINFSSCVNLIEFPQ----ISGKITRLYLGQSAIEEVPSS-IECLTDLEVLDLRDCK 591 (658)
Q Consensus 537 ~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~ 591 (658)
+|+.|++++|. +..++. ..++|+.|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 158 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 158 SLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 77777777653 333332 234555666666666655543 4556666666666554
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=5.5e-17 Score=160.59 Aligned_cols=197 Identities=20% Similarity=0.251 Sum_probs=103.4
Q ss_pred hcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccc
Q 047214 382 FTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLW 461 (658)
Q Consensus 382 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~ 461 (658)
...+++|+.|+++++.+. . ...+..++ +|++|++++|.+..++....+++|++|++++|.++.++
T Consensus 37 ~~~l~~L~~L~l~~~~i~-------------~-~~~l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIK-------------S-VQGIQYLP-NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP 101 (272)
T ss_dssp HHHHTTCCEEECTTSCCC-------------C-CTTGGGCT-TCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC
T ss_pred cccccceeeeeeCCCCcc-------------c-ccccccCC-CCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC
Confidence 334566666666666652 1 22355555 66666666666666554345666666666666666554
Q ss_pred cc-ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccccccc-ccCCCCCCEEeccCCCCCCcCCCCCCCC
Q 047214 462 EG-KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPSS-IQNFKYLSALSFEGCKSLRSFPSNFRFV 536 (658)
Q Consensus 462 ~~-~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~ 536 (658)
.. +..+++|++|++++|. +..++ ++.+++|++|++++|.+..+++. +..+++|++|++++| .++.++...
T Consensus 102 ~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~--- 176 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGV--- 176 (272)
T ss_dssp TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTT---
T ss_pred hhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHH---
Confidence 43 4555666666666653 33333 45555555555555555554432 345555555555554 233333211
Q ss_pred CCcEEeccCCCCccccCcccCCccEEEcccccccccccc-ccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCc
Q 047214 537 CPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSS-IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCL 615 (658)
Q Consensus 537 ~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 615 (658)
...+++|+.|++++|.+..++.. +..+++|++|++++|+.. +.+++|+.|.+++|.
T Consensus 177 ----------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 177 ----------------FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINK 233 (272)
T ss_dssp ----------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHH
T ss_pred ----------------hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHh
Confidence 00123344444444555544443 566677777777776522 334556666665554
Q ss_pred CCccCC
Q 047214 616 NLQSLP 621 (658)
Q Consensus 616 ~l~~l~ 621 (658)
.-+.+|
T Consensus 234 ~~g~ip 239 (272)
T 3rfs_A 234 HSGVVR 239 (272)
T ss_dssp TGGGBB
T ss_pred CCCccc
Confidence 444444
No 81
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=1.1e-16 Score=173.11 Aligned_cols=188 Identities=20% Similarity=0.230 Sum_probs=157.3
Q ss_pred CCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccC
Q 047214 387 NLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKE 466 (658)
Q Consensus 387 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~ 466 (658)
+|+.|++++|.+. .+|..+. + +|++|++++|.++.+| ..+.+|++|++++|.++.+|. +..
T Consensus 60 ~L~~L~Ls~n~L~-------------~lp~~l~--~-~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~ 120 (571)
T 3cvr_A 60 QFSELQLNRLNLS-------------SLPDNLP--P-QITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPA 120 (571)
T ss_dssp TCSEEECCSSCCS-------------CCCSCCC--T-TCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCT
T ss_pred CccEEEeCCCCCC-------------ccCHhHc--C-CCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhc
Confidence 8999999999983 3666553 3 8999999999999999 457899999999999999988 655
Q ss_pred CCCccEEeccCCCcccccCCCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCC
Q 047214 467 AFKLKSINLSHCRHFIDMSYPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSC 546 (658)
Q Consensus 467 l~~L~~L~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~ 546 (658)
+|++|++++| .+..+|- .+++|+.|++++|.+..+|. .+++|++|++++| .++.+|. +. ++|+.|++++|
T Consensus 121 --~L~~L~Ls~N-~l~~lp~-~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~-~~L~~L~Ls~N 190 (571)
T 3cvr_A 121 --SLKHLDVDNN-QLTMLPE-LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP-ESLEALDVSTN 190 (571)
T ss_dssp --TCCEEECCSS-CCSCCCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC-CC-TTCCEEECCSS
T ss_pred --CCCEEECCCC-cCCCCCC-cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch-hh-CCCCEEECcCC
Confidence 9999999999 4555775 68899999999999998886 6789999999998 6777888 54 89999999987
Q ss_pred CCccccCcccCCc-------cEEEccccccccccccccCCCCCCEEecCCCccchhhhhhhcCCC
Q 047214 547 VNLIEFPQISGKI-------TRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRFCKLR 604 (658)
Q Consensus 547 ~~l~~~~~~~~~L-------~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 604 (658)
.+..+|....+| +.|++++|.|+.+|..+..+++|+.|++++|+....+|..+..+.
T Consensus 191 -~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 191 -LLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -CCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred -CCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 466777755578 999999999999999888899999999999998788887766543
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=4.1e-16 Score=154.12 Aligned_cols=188 Identities=20% Similarity=0.272 Sum_probs=150.3
Q ss_pred ccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccc-cccCCCCccEEeccCCCcccccC---CCcCCCccEEEeec
Q 047214 424 NLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWE-GKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDY 499 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~ 499 (658)
..+++++++++++.+|..+. .+|+.|+|++|.+..++. .+..+++|++|++++| .+..+| +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCC
Confidence 67788999999999887664 689999999999988876 5888999999999988 455666 68899999999999
Q ss_pred CCcccccc-cccCCCCCCEEeccCCCCCCcCCCC--CCCCCCcEEeccCCCCccccCc----ccCCccEEEccccccccc
Q 047214 500 TNFACVPS-SIQNFKYLSALSFEGCKSLRSFPSN--FRFVCPVTINFSSCVNLIEFPQ----ISGKITRLYLGQSAIEEV 572 (658)
Q Consensus 500 ~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~~~ 572 (658)
|.+..+|. .+..+++|++|++++| .++.++.. ..+++|+.|++++|. +..+|. ..++|+.|++++|.+..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEe
Confidence 98888875 4688899999999987 56666553 378999999999874 444543 346888999999999988
Q ss_pred ccc-ccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCc
Q 047214 573 PSS-IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCL 615 (658)
Q Consensus 573 ~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 615 (658)
+.. +..+++|++|++++|......+..+..+++|+.|++++|+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 764 7788999999999987443333457788999999999876
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.71 E-value=1e-16 Score=155.35 Aligned_cols=187 Identities=16% Similarity=0.243 Sum_probs=104.8
Q ss_pred ccceEEecccCCCCCCCC-C-CCCCccEEEecCCC-cccccc-cccCCCCccEEeccCCCcccccC---CCcCCCccEEE
Q 047214 424 NLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSK-VEQLWE-GKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYL 496 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~-i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~ 496 (658)
++++|++++|+++.+|+. + .+++|++|++++|. ++.++. .+..+++|++|++++|..+..++ +.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 555555555555555542 2 45555555555554 555544 34555555555555522344443 44555555555
Q ss_pred eecCCcccccccccCCCCCC---EEeccCCCCCCcCCCC--CCCCCCc-EEeccCCCCccccCcc---cCCccEEEcccc
Q 047214 497 LDYTNFACVPSSIQNFKYLS---ALSFEGCKSLRSFPSN--FRFVCPV-TINFSSCVNLIEFPQI---SGKITRLYLGQS 567 (658)
Q Consensus 497 l~~~~~~~~~~~~~~l~~L~---~L~l~~~~~l~~~~~~--~~~~~L~-~L~l~~~~~l~~~~~~---~~~L~~L~l~~~ 567 (658)
+++|.+..+|. +..+++|+ +|++++|..++.++.. .++++|+ .|++++|. +..+|.. ..+|+.|++++|
T Consensus 112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCC
Confidence 55555555554 55555555 5555555444444442 2455555 56655542 3333321 135667777777
Q ss_pred c-ccccccc-ccCC-CCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCc
Q 047214 568 A-IEEVPSS-IECL-TDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCL 615 (658)
Q Consensus 568 ~-i~~~~~~-~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 615 (658)
. ++.+|.. +..+ ++|+.|++++|+ +..+|.. .+++|+.|.+.++.
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred CCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 3 7766543 6777 888888888876 3455543 67788888887764
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=3.2e-18 Score=175.38 Aligned_cols=241 Identities=17% Similarity=0.173 Sum_probs=163.8
Q ss_pred CCcEEEeecCcccCcchhhhcccCceecCCCCCCc--ccccceEEecccCCCCCCCCC-CCCCccEEEecCCCccc--cc
Q 047214 387 NLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYL--PKNLRYLHWDKYPLRTLPSNF-KPENLVELNLHFSKVEQ--LW 461 (658)
Q Consensus 387 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l--~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~--l~ 461 (658)
.++.++++++.+. |..+..+ + ++++|++++|.+...+... .+.+|++|++++|.+.. ++
T Consensus 48 ~~~~l~l~~~~~~---------------~~~~~~~~~~-~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 48 LWQTLDLTGKNLH---------------PDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp TSSEEECTTCBCC---------------HHHHHHHHHT-TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH
T ss_pred hheeeccccccCC---------------HHHHHhhhhc-cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH
Confidence 4677888877651 2333333 3 7888888888877555444 78888888888888763 66
Q ss_pred ccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecC-Cccc--ccccccCCCCCCEEeccCCCCCCc--CCCCC-
Q 047214 462 EGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYT-NFAC--VPSSIQNFKYLSALSFEGCKSLRS--FPSNF- 533 (658)
Q Consensus 462 ~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~-~~~~--~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~- 533 (658)
..+..+++|++|++++|......+ ++.+++|++|++++| .+.. ++..+..+++|++|++++|..++. ++...
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 191 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence 667888888888888885333444 778888888888887 5653 566677888888888888855553 33322
Q ss_pred CCC-CCcEEeccCCC-Ccc--ccC---cccCCccEEEccccc-cc-cccccccCCCCCCEEecCCCccc-hhhhhhhcCC
Q 047214 534 RFV-CPVTINFSSCV-NLI--EFP---QISGKITRLYLGQSA-IE-EVPSSIECLTDLEVLDLRDCKRL-KRISTRFCKL 603 (658)
Q Consensus 534 ~~~-~L~~L~l~~~~-~l~--~~~---~~~~~L~~L~l~~~~-i~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l 603 (658)
.++ +|+.|++++|. .++ .++ ..+++|+.|++++|. ++ ..+..+..+++|++|++++|... ......++.+
T Consensus 192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~ 271 (336)
T 2ast_B 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI 271 (336)
T ss_dssp HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence 577 88888888874 232 223 245788899998887 54 55566888899999999998532 2222357789
Q ss_pred CCCcEEeccCCcCCccCCCCCCcccEEeccCCccccccCC
Q 047214 604 RSLVDLFLHGCLNLQSLPALPLCLKSLDLRDCKMLQSLPE 643 (658)
Q Consensus 604 ~~L~~L~l~~~~~l~~l~~l~~~L~~L~l~~~~~l~~i~~ 643 (658)
++|+.|++++|-.-..+..+..+++.|++++|......|.
T Consensus 272 ~~L~~L~l~~~i~~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 272 PTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp TTCCEEECTTSSCTTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred CCCCEEeccCccCHHHHHHHHhhCcceEEecccCccccCC
Confidence 9999999999821111223322266677877764444554
No 85
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.70 E-value=2.2e-16 Score=162.60 Aligned_cols=282 Identities=14% Similarity=0.088 Sum_probs=171.4
Q ss_pred cCCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc------cc
Q 047214 22 VATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS------ET 95 (658)
Q Consensus 22 ~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~------~~ 95 (658)
.|+..+..|+||+.+++.+.+++.. + +++.|+|++|+|||||+++++++.. .+|+. +.... ..
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~---~--~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~-~~~~~~~~~~~~~ 74 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN---Y--PLTLLLGIRRVGKSSLLRAFLNERP-----GILID-CRELYAERGHITR 74 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH---C--SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEE-HHHHHHTTTCBCH
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc---C--CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEE-eecccccccCCCH
Confidence 3666778899999999999999875 2 6899999999999999999998752 56665 32221 11
Q ss_pred ch-hhHhHHHhhh----------------cCC----CCch----hHHHHhcC-cceEEEEeCCCCchh--------hhhh
Q 047214 96 GG-GKILSEKLEV----------------AGA----NIPH----FTKERVRR-MKVLIVLDDVNEVGQ--------LEGL 141 (658)
Q Consensus 96 ~~-~~~l~~~l~~----------------~~~----~~~~----~l~~~l~~-~~~LlvlDdv~~~~~--------~~~l 141 (658)
.. ++.+.+.+.. ... ...+ .+.+..+. ++.+||+||++.... +..+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 11 1222222111 000 1112 23333332 389999999977542 2222
Q ss_pred hcccCCCCCCCEEEEEecchHHHHh----------hcCC-CceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 047214 142 IGELDQFGPGSRIVVTTRDKRVLEK----------FRGE-KKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVV 210 (658)
Q Consensus 142 ~~~l~~~~~~~~ilvttR~~~~~~~----------~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 210 (658)
+..+....++.++|+|++....... ..+. ...+.+.+|+.+++.+++.......... ..++.+..++
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~ 232 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAV 232 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Confidence 3222222357889999987653221 1112 3489999999999999998764322211 1234678999
Q ss_pred HHcCCCcchhHHhhccccc-ccHHHH-HHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeeecCCCCCHHHHH
Q 047214 211 EYADGNPLVPKVLGSSLCL-KRKSHW-ENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIACFFEGEDKDFVA 288 (658)
Q Consensus 211 ~~~~g~Plai~~~a~~l~~-~~~~~w-~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp~~~~~~~l~ 288 (658)
+.|+|+|+++..++..+.. .+...+ ....+.....-. ..+... .+ + ++..+.++..+|. .......+.
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~l---~~-~-~~~~~~~l~~la~--g~~~~~~l~ 302 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIM---GELEEL---RR-R-SPRYVDILRAIAL--GYNRWSLIR 302 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---HHHHHH---HH-H-CHHHHHHHHHHHT--TCCSHHHHH
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH---HHHHHH---Hh-C-ChhHHHHHHHHHh--CCCCHHHHH
Confidence 9999999999988765422 122211 111111110000 111111 11 2 7788999988887 335666665
Q ss_pred HHh-----cc---ccccchHHhhhccCceeeCCeEEe-ehHHHHHHH
Q 047214 289 RIL-----DD---SESDGLDVLIDKSLISISGNCLQM-HDLLQEMGQ 326 (658)
Q Consensus 289 ~~~-----~~---~~~~~l~~L~~~~ll~~~~~~~~~-H~~v~~~~~ 326 (658)
..+ .- ....+++.|.+.++|....+.|.+ |++++++.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 303 DYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 554 11 456789999999999887666764 788888754
No 86
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.70 E-value=1.7e-16 Score=163.92 Aligned_cols=282 Identities=18% Similarity=0.096 Sum_probs=171.8
Q ss_pred cCCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccc------ccc
Q 047214 22 VATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKN------SET 95 (658)
Q Consensus 22 ~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~------~~~ 95 (658)
.++.....|+||+++++.|.+ +.. +++.|+|++|+|||+|++++++.... ..+|+. .... ...
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~------~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~ 75 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA------PITLVLGLRRTGKSSIIKIGINELNL---PYIYLD-LRKFEERNYISYK 75 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS------SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEE-GGGGTTCSCCCHH
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC------CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEE-chhhccccCCCHH
Confidence 356677889999999999999 742 58999999999999999999988653 246666 3321 111
Q ss_pred chhhHhHHHhhh--------------------c-----------CCCCchhHHHHhcC---cceEEEEeCCCCch-----
Q 047214 96 GGGKILSEKLEV--------------------A-----------GANIPHFTKERVRR---MKVLIVLDDVNEVG----- 136 (658)
Q Consensus 96 ~~~~~l~~~l~~--------------------~-----------~~~~~~~l~~~l~~---~~~LlvlDdv~~~~----- 136 (658)
..+..+.+.+.. . .....+.+.+.+.. ++.+|||||++...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch
Confidence 111222222210 0 01112334444432 48999999997643
Q ss_pred hhhhhhcccCCCCCCCEEEEEecchHHHHh----------hcCC-CceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHH
Q 047214 137 QLEGLIGELDQFGPGSRIVVTTRDKRVLEK----------FRGE-KKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWH 205 (658)
Q Consensus 137 ~~~~l~~~l~~~~~~~~ilvttR~~~~~~~----------~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~ 205 (658)
++..++..+.....+.++|+|+|....... ..+. ...+.+.+|+.+++.+++...........+.
T Consensus 156 ~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---- 231 (357)
T 2fna_A 156 NLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---- 231 (357)
T ss_dssp CCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----
T ss_pred hHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----
Confidence 233333333222347889999997653221 1122 3689999999999999998754211111222
Q ss_pred HHHHHHHcCCCcchhHHhhcccccc-cHHHHHH-HHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeeecCCCCC
Q 047214 206 SQRVVEYADGNPLVPKVLGSSLCLK-RKSHWEN-LLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIACFFEGED 283 (658)
Q Consensus 206 ~~~i~~~~~g~Plai~~~a~~l~~~-~~~~w~~-~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp~~~~ 283 (658)
...|++.|+|+|+++..++..+... +...|.. ..+.....-. ..+...+.- -..+++..+.++..+|+ . . .
T Consensus 232 ~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~-~~~l~~~~~~~l~~la~-g-~-~ 304 (357)
T 2fna_A 232 YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLIL---KEFENFLHG-REIARKRYLNIMRTLSK-C-G-K 304 (357)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---HHHHHHHTT-CGGGHHHHHHHHHHHTT-C-B-C
T ss_pred HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH---HHHHHHhhc-cccccHHHHHHHHHHHc-C-C-C
Confidence 2789999999999999988765322 2223321 1111100000 011111110 01678888999999888 3 3 6
Q ss_pred HHHHHHH----hc-----cccccchHHhhhccCceeeCCeEE-eehHHHHHH
Q 047214 284 KDFVARI----LD-----DSESDGLDVLIDKSLISISGNCLQ-MHDLLQEMG 325 (658)
Q Consensus 284 ~~~l~~~----~~-----~~~~~~l~~L~~~~ll~~~~~~~~-~H~~v~~~~ 325 (658)
...+... .. .....+++.|++.++|....+.|+ .|++++++.
T Consensus 305 ~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 305 WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 6666533 22 145678999999999988766666 578888864
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.69 E-value=5.2e-18 Score=173.75 Aligned_cols=232 Identities=18% Similarity=0.265 Sum_probs=177.8
Q ss_pred ccceEEecccCCCCCCCCC-CC--CCccEEEecCCCcccccccccCCCCccEEeccCCCcccc-cC--CCcCCCccEEEe
Q 047214 424 NLRYLHWDKYPLRTLPSNF-KP--ENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFID-MS--YPSAPNLETYLL 497 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~-~l--~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~-~~--l~~l~~L~~L~l 497 (658)
.++.++++++.+. |..+ .+ .+++.|++++|.+...+..+..+++|++|++++|..... ++ +..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 5788999988776 3322 44 789999999999998887788899999999999963322 55 889999999999
Q ss_pred ecCCcc-cccccccCCCCCCEEeccCCCCCCc--CCCCC-CCCCCcEEeccCCCCccc--cC---cccC-CccEEEcccc
Q 047214 498 DYTNFA-CVPSSIQNFKYLSALSFEGCKSLRS--FPSNF-RFVCPVTINFSSCVNLIE--FP---QISG-KITRLYLGQS 567 (658)
Q Consensus 498 ~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~--~~~~~-~~~~L~~L~l~~~~~l~~--~~---~~~~-~L~~L~l~~~ 567 (658)
++|.+. ..+..+..+++|++|++++|..++. ++... ++++|+.|++++|..++. ++ ..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 998886 4566788899999999999966663 44433 689999999999955543 23 2456 9999999999
Q ss_pred c--c--ccccccccCCCCCCEEecCCCcc-chhhhhhhcCCCCCcEEeccCCcCCc-----cCCCCCCcccEEeccCCcc
Q 047214 568 A--I--EEVPSSIECLTDLEVLDLRDCKR-LKRISTRFCKLRSLVDLFLHGCLNLQ-----SLPALPLCLKSLDLRDCKM 637 (658)
Q Consensus 568 ~--i--~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~-----~l~~l~~~L~~L~l~~~~~ 637 (658)
. + ..++..+..+++|++|++++|.. ....+..+..+++|++|++++|..+. .+..+|+ |++|++++|-.
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~i~ 284 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT-LKTLQVFGIVP 284 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT-CCEEECTTSSC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC-CCEEeccCccC
Confidence 4 4 45677778899999999999984 35666778999999999999996443 2447898 99999999911
Q ss_pred ccccCCCCCCccEEeccCCCC
Q 047214 638 LQSLPELPSCLEALDLTSCNM 658 (658)
Q Consensus 638 l~~i~~~~~~L~~L~l~~~~~ 658 (658)
-..+.....+|..|++++|.+
T Consensus 285 ~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 285 DGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp TTCHHHHHHHSTTSEESCCCS
T ss_pred HHHHHHHHhhCcceEEecccC
Confidence 011111223477777877764
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=1.6e-16 Score=157.26 Aligned_cols=194 Identities=24% Similarity=0.274 Sum_probs=149.2
Q ss_pred cceeEeeccCccccccccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCC
Q 047214 360 DAIEGISLDLSKIKGINLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLP 439 (658)
Q Consensus 360 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp 439 (658)
..++.+.+....+.. ...+..+++|++|++++|.+.+ + ..+..++ +|++|++++|.++.+|
T Consensus 41 ~~L~~L~l~~~~i~~----~~~l~~l~~L~~L~l~~n~l~~-------------~-~~l~~l~-~L~~L~L~~n~l~~~~ 101 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS----VQGIQYLPNVRYLALGGNKLHD-------------I-SALKELT-NLTYLILTGNQLQSLP 101 (272)
T ss_dssp TTCCEEECTTSCCCC----CTTGGGCTTCCEEECTTSCCCC-------------C-GGGTTCT-TCCEEECTTSCCCCCC
T ss_pred cceeeeeeCCCCccc----ccccccCCCCcEEECCCCCCCC-------------c-hhhcCCC-CCCEEECCCCccCccC
Confidence 345666666655543 2457889999999999999732 2 3677777 9999999999999888
Q ss_pred CCC--CCCCccEEEecCCCccccccc-ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccccccc-ccCC
Q 047214 440 SNF--KPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPSS-IQNF 512 (658)
Q Consensus 440 ~~~--~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~-~~~l 512 (658)
+.. .+.+|++|++++|.+..++.. +..+++|++|++++| .+..++ ++.+++|++|++++|.+..++.. +..+
T Consensus 102 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 180 (272)
T 3rfs_A 102 NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180 (272)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCC
Confidence 754 899999999999999988776 789999999999999 555665 78999999999999999888754 6889
Q ss_pred CCCCEEeccCCCCCCcCCCC--CCCCCCcEEeccCCCCccccCcccCCccEEEccccccc-cccccccC
Q 047214 513 KYLSALSFEGCKSLRSFPSN--FRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIE-EVPSSIEC 578 (658)
Q Consensus 513 ~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~ 578 (658)
++|++|++++| .+..++.. ..+++|+.|++++|+.... +++|+.|+++.|.+. .+|.+++.
T Consensus 181 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 181 TQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCC----TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred ccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCcccc----CcHHHHHHHHHHhCCCcccCcccc
Confidence 99999999998 56666653 3688888888888753322 234555555555544 44444443
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.68 E-value=7.7e-16 Score=158.24 Aligned_cols=225 Identities=18% Similarity=0.270 Sum_probs=142.9
Q ss_pred cEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC--CCCCccEEEecCCCcc-ccccc-c
Q 047214 389 RLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF--KPENLVELNLHFSKVE-QLWEG-K 464 (658)
Q Consensus 389 ~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~-~l~~~-~ 464 (658)
++++.+++.+ ..+|..+ +.++++|+|++|+|+.+|... ++++|++|+|++|.+. .+|.. +
T Consensus 12 ~~v~C~~~~L-------------t~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f 75 (350)
T 4ay9_X 12 RVFLCQESKV-------------TEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75 (350)
T ss_dssp TEEEEESTTC-------------CSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB
T ss_pred CEEEecCCCC-------------CccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh
Confidence 4566666665 3455544 347777777777777777643 6777777777777764 34443 5
Q ss_pred cCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccccc-cccCCCCCCEEeccCCCCCCcCCCCC--CC-CC
Q 047214 465 KEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPS-SIQNFKYLSALSFEGCKSLRSFPSNF--RF-VC 537 (658)
Q Consensus 465 ~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~~--~~-~~ 537 (658)
.++++|+.+...+++.+..++ +..+++|++|++++|.+..+|. .+....++..|++.++..+..++... .+ ..
T Consensus 76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~ 155 (350)
T 4ay9_X 76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155 (350)
T ss_dssp CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSS
T ss_pred hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchh
Confidence 667776665444443555554 6777777777777777776654 34455566677777666666666532 33 35
Q ss_pred CcEEeccCCCCccccCccc---CCccEEEcc-cccccccccc-ccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEecc
Q 047214 538 PVTINFSSCVNLIEFPQIS---GKITRLYLG-QSAIEEVPSS-IECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLH 612 (658)
Q Consensus 538 L~~L~l~~~~~l~~~~~~~---~~L~~L~l~-~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 612 (658)
++.|++++| .++.++... .+|.+|++. +|.++.+|.. |..+++|+.|++++|. +..+|. ..+.+|+.|.+.
T Consensus 156 l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~--~~~~~L~~L~~l 231 (350)
T 4ay9_X 156 SVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS--YGLENLKKLRAR 231 (350)
T ss_dssp CEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS--SSCTTCCEEECT
T ss_pred hhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh--hhhccchHhhhc
Confidence 677777765 345554432 345567775 4667777764 5777788888887775 455553 346667777766
Q ss_pred CCcCCccCC---CCCCcccEEeccC
Q 047214 613 GCLNLQSLP---ALPLCLKSLDLRD 634 (658)
Q Consensus 613 ~~~~l~~l~---~l~~~L~~L~l~~ 634 (658)
++..++.+| .+++ |+.+++.+
T Consensus 232 ~~~~l~~lP~l~~l~~-L~~l~l~~ 255 (350)
T 4ay9_X 232 STYNLKKLPTLEKLVA-LMEASLTY 255 (350)
T ss_dssp TCTTCCCCCCTTTCCS-CCEEECSC
T ss_pred cCCCcCcCCCchhCcC-hhhCcCCC
Confidence 666677666 4566 77777765
No 90
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.67 E-value=6e-18 Score=181.35 Aligned_cols=285 Identities=17% Similarity=0.218 Sum_probs=175.0
Q ss_pred ceeEeeccCccccccc--cCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCC-
Q 047214 361 AIEGISLDLSKIKGIN--LDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRT- 437 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~- 437 (658)
.++.+.+....+.... .....+..+++|++|++++|.+..... ..+...+.....+|++|++++|.+..
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~--------~~l~~~l~~~~~~L~~L~L~~n~i~~~ 100 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV--------HCVLQGLQTPSCKIQKLSLQNCCLTGA 100 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH--------HHHHHTTCSTTCCCCEEECTTSCCBGG
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHH--------HHHHHHHhhCCCceeEEEccCCCCCHH
Confidence 4555555544432211 123456677788888888877632110 00111121111158888888887763
Q ss_pred ----CCCCC-CCCCccEEEecCCCcccc-c----cc-ccCCCCccEEeccCCCcccc----cC--CCcCCCccEEEeecC
Q 047214 438 ----LPSNF-KPENLVELNLHFSKVEQL-W----EG-KKEAFKLKSINLSHCRHFID----MS--YPSAPNLETYLLDYT 500 (658)
Q Consensus 438 ----lp~~~-~l~~L~~L~L~~~~i~~l-~----~~-~~~l~~L~~L~l~~~~~~~~----~~--l~~l~~L~~L~l~~~ 500 (658)
+|..+ .+++|++|++++|.+... + .. .....+|++|++++|..... ++ +..+++|++|++++|
T Consensus 101 ~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 101 GCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp GHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 34444 677888888888877632 1 11 22355788888888842221 23 566788888888887
Q ss_pred Cccccc-cccc-----CCCCCCEEeccCCCCCCc-----CCCCC-CCCCCcEEeccCCCCccc-----c----CcccCCc
Q 047214 501 NFACVP-SSIQ-----NFKYLSALSFEGCKSLRS-----FPSNF-RFVCPVTINFSSCVNLIE-----F----PQISGKI 559 (658)
Q Consensus 501 ~~~~~~-~~~~-----~l~~L~~L~l~~~~~l~~-----~~~~~-~~~~L~~L~l~~~~~l~~-----~----~~~~~~L 559 (658)
.+...+ ..+. .+++|++|++++| .++. ++..+ .+++|+.|++++|. ++. + ....++|
T Consensus 181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L 258 (461)
T 1z7x_W 181 DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRL 258 (461)
T ss_dssp BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCC
T ss_pred CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCc
Confidence 775432 1121 3568888888887 3443 22222 57888888888874 322 1 1135688
Q ss_pred cEEEcccccccc-----ccccccCCCCCCEEecCCCccchhhhhhhc-----CCCCCcEEeccCCcCCcc-----CC---
Q 047214 560 TRLYLGQSAIEE-----VPSSIECLTDLEVLDLRDCKRLKRISTRFC-----KLRSLVDLFLHGCLNLQS-----LP--- 621 (658)
Q Consensus 560 ~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~l~~-----l~--- 621 (658)
++|++++|.++. ++..+..+++|++|++++|......+..+. ..++|++|++++|. ++. ++
T Consensus 259 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l 337 (461)
T 1z7x_W 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVL 337 (461)
T ss_dssp CEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHH
T ss_pred eEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHH
Confidence 899999888886 566677788999999998875433332222 23689999999886 332 22
Q ss_pred -CCCCcccEEeccCCcccccc-C----C----CCCCccEEeccCCCC
Q 047214 622 -ALPLCLKSLDLRDCKMLQSL-P----E----LPSCLEALDLTSCNM 658 (658)
Q Consensus 622 -~l~~~L~~L~l~~~~~l~~i-~----~----~~~~L~~L~l~~~~~ 658 (658)
.+++ |++|++++|. ++.. + . ..++|++|++++|.+
T Consensus 338 ~~~~~-L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 338 AQNRF-LLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHCSS-CCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred hhCCC-ccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 4577 9999999986 3322 1 1 145899999999875
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=1e-15 Score=165.76 Aligned_cols=180 Identities=14% Similarity=0.245 Sum_probs=151.6
Q ss_pred ccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCc
Q 047214 424 NLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNF 502 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 502 (658)
++++|++++|+++.+|..+ +++|++|+|++|.++.+| ..+++|++|++++| .+..+| +.. +|++|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~l~~--~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPELPA--SLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCCCCT--TCCEEECCSSCC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcchhhc--CCCEEECCCCcC
Confidence 7999999999999999876 388999999999999998 56789999999999 566688 554 999999999999
Q ss_pred ccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEccccccccccccccCCCCC
Q 047214 503 ACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSIECLTDL 582 (658)
Q Consensus 503 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L 582 (658)
..+|. .+++|+.|++++| .++.+|. .+++|+.|++++|. ++.+|....+|+.|++++|.++.+|. +.. +|
T Consensus 133 ~~lp~---~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-L~~lp~l~~~L~~L~Ls~N~L~~lp~-~~~--~L 202 (571)
T 3cvr_A 133 TMLPE---LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQ-LTFLPELPESLEALDVSTNLLESLPA-VPV--RN 202 (571)
T ss_dssp SCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSCCSSCCC-CC-----
T ss_pred CCCCC---cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCC-CCCcchhhCCCCEEECcCCCCCchhh-HHH--hh
Confidence 99887 6899999999998 5777887 67899999999975 55577655789999999999999988 544 67
Q ss_pred -------CEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC
Q 047214 583 -------EVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP 621 (658)
Q Consensus 583 -------~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~ 621 (658)
+.|++++|. +..+|..+..+++|+.|++++|+.-+.+|
T Consensus 203 ~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 203 HHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -----CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 999999987 55788888889999999999987444443
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=6.7e-16 Score=155.91 Aligned_cols=188 Identities=20% Similarity=0.181 Sum_probs=110.0
Q ss_pred CCccEEeccCCCcccccC--C--CcCCCccEEEeecCCcccc-c----ccccCCCCCCEEeccCCCCCCcCCC-CC-CCC
Q 047214 468 FKLKSINLSHCRHFIDMS--Y--PSAPNLETYLLDYTNFACV-P----SSIQNFKYLSALSFEGCKSLRSFPS-NF-RFV 536 (658)
Q Consensus 468 ~~L~~L~l~~~~~~~~~~--l--~~l~~L~~L~l~~~~~~~~-~----~~~~~l~~L~~L~l~~~~~l~~~~~-~~-~~~ 536 (658)
.+|++|++++|......| + +.+++|++|++++|.+... + ..+..+++|++|++++|. +..++. .+ +++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCC
Confidence 345555555554333333 3 5555566666655555431 1 123345566666666553 333332 22 555
Q ss_pred CCcEEeccCCCCcc-------ccCcccCCccEEEcccccccccccc----ccCCCCCCEEecCCCccchhhhhhhcCC--
Q 047214 537 CPVTINFSSCVNLI-------EFPQISGKITRLYLGQSAIEEVPSS----IECLTDLEVLDLRDCKRLKRISTRFCKL-- 603 (658)
Q Consensus 537 ~L~~L~l~~~~~l~-------~~~~~~~~L~~L~l~~~~i~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~l-- 603 (658)
+|+.|++++|...+ ..+..+++|++|++++|.++.++.. +..+++|++|++++|......|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 66666666554221 1112345667777777777655442 4667888888888887555446555555
Q ss_pred -CCCcEEeccCCcCCccCC-CCCCcccEEeccCCccccccC--CCCCCccEEeccCCCC
Q 047214 604 -RSLVDLFLHGCLNLQSLP-ALPLCLKSLDLRDCKMLQSLP--ELPSCLEALDLTSCNM 658 (658)
Q Consensus 604 -~~L~~L~l~~~~~l~~l~-~l~~~L~~L~l~~~~~l~~i~--~~~~~L~~L~l~~~~~ 658 (658)
++|++|++++|. ++.+| .++.+|++|++++|. ++.+| ..+++|+.|++++|++
T Consensus 250 ~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 250 SSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCC-CCSCCCTTSCCCCSCEECSSTTT
T ss_pred cCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCc-CCCCchhhhCCCccEEECcCCCC
Confidence 688888888765 55666 333338888888887 44444 4677888888888875
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=6.5e-16 Score=156.05 Aligned_cols=191 Identities=18% Similarity=0.121 Sum_probs=124.2
Q ss_pred CCCCcEEEeecCcccCcchhhhcccCceecCCCC--CCcccccceEEecccCCCCCCCC------CCCCCccEEEecCCC
Q 047214 385 MSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGL--DYLPKNLRYLHWDKYPLRTLPSN------FKPENLVELNLHFSK 456 (658)
Q Consensus 385 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~--~~l~~~L~~L~l~~~~l~~lp~~------~~l~~L~~L~L~~~~ 456 (658)
+++|+.|++++|.+. ...|..+ ..++ +|++|++++|.+...... ..+++|++|+|++|.
T Consensus 90 ~~~L~~L~l~~n~l~------------~~~~~~~~~~~~~-~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 156 (310)
T 4glp_A 90 YSRLKELTLEDLKIT------------GTMPPLPLEATGL-ALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH 156 (310)
T ss_dssp HSCCCEEEEESCCCB------------SCCCCCSSSCCCB-CCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS
T ss_pred cCceeEEEeeCCEec------------cchhhhhhhccCC-CCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC
Confidence 466999999999873 3466666 6777 899999999988853221 257889999999998
Q ss_pred ccccc-ccccCCCCccEEeccCCCcccc--cC----CCcCCCccEEEeecCCcccccc----cccCCCCCCEEeccCCCC
Q 047214 457 VEQLW-EGKKEAFKLKSINLSHCRHFID--MS----YPSAPNLETYLLDYTNFACVPS----SIQNFKYLSALSFEGCKS 525 (658)
Q Consensus 457 i~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~----l~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~~~ 525 (658)
+..++ ..+..+++|++|++++|..... ++ ++.+++|++|++++|.+..++. .+..+++|++|++++|.
T Consensus 157 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~- 235 (310)
T 4glp_A 157 SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNS- 235 (310)
T ss_dssp SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSC-
T ss_pred cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCC-
Confidence 88766 4578888999999998864321 22 4678889999999888876654 24677889999998874
Q ss_pred CCcC-CCCC-CC---CCCcEEeccCCCCccccCcc-cCCccEEEccccccccccccccCCCCCCEEecCCCc
Q 047214 526 LRSF-PSNF-RF---VCPVTINFSSCVNLIEFPQI-SGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCK 591 (658)
Q Consensus 526 l~~~-~~~~-~~---~~L~~L~l~~~~~l~~~~~~-~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~ 591 (658)
+... |..+ .+ ++|+.|++++|. ++.+|.. +++|+.|++++|.++.+|. +..+++|+.|++++|+
T Consensus 236 l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 236 LRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTT
T ss_pred CCccchhhHHhccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCC
Confidence 4443 4432 22 455566555542 3333331 2344455555555444433 3444444444444443
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.65 E-value=6.2e-17 Score=169.05 Aligned_cols=227 Identities=11% Similarity=0.050 Sum_probs=145.4
Q ss_pred chhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCC----CC--------CCCCC
Q 047214 379 SGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLP----SN--------FKPEN 446 (658)
Q Consensus 379 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp----~~--------~~l~~ 446 (658)
...+..+++|+.|++++|.+..... ..++..+..++ +|++|+|++|.+..+. .. ..+++
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~--------~~l~~~l~~~~-~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAA--------RWLSENIASKK-DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHH--------HHHHHTTTTCT-TCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred HHHHhcCCCccEEECCCCCCCHHHH--------HHHHHHHHhCC-CccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 4566778899999999998733211 12445566777 9999999998766443 22 26789
Q ss_pred ccEEEecCCCccc-----ccccccCCCCccEEeccCCCcccc----cC--CCcC---------CCccEEEeecCCcc--c
Q 047214 447 LVELNLHFSKVEQ-----LWEGKKEAFKLKSINLSHCRHFID----MS--YPSA---------PNLETYLLDYTNFA--C 504 (658)
Q Consensus 447 L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~----~~--l~~l---------~~L~~L~l~~~~~~--~ 504 (658)
|++|+|++|.+.. +|..+..+++|++|++++|..... ++ +..+ ++|++|++++|.+. .
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 9999999998875 677788889999999999853211 11 3333 88999999888875 3
Q ss_pred cc---ccccCCCCCCEEeccCCCCCC------cCC-CCCCCCCCcEEeccCCCCc----cccCc---ccCCccEEEcccc
Q 047214 505 VP---SSIQNFKYLSALSFEGCKSLR------SFP-SNFRFVCPVTINFSSCVNL----IEFPQ---ISGKITRLYLGQS 567 (658)
Q Consensus 505 ~~---~~~~~l~~L~~L~l~~~~~l~------~~~-~~~~~~~L~~L~l~~~~~l----~~~~~---~~~~L~~L~l~~~ 567 (658)
++ ..+..+++|++|++++| .++ ..+ ....+++|+.|++++|..- ..+|. ..++|+.|++++|
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 44 35667888999999887 444 233 3335677777777776421 22222 2345666666666
Q ss_pred ccccc-----cccc--cCCCCCCEEecCCCccch----hhhhhh-cCCCCCcEEeccCCc
Q 047214 568 AIEEV-----PSSI--ECLTDLEVLDLRDCKRLK----RISTRF-CKLRSLVDLFLHGCL 615 (658)
Q Consensus 568 ~i~~~-----~~~~--~~l~~L~~L~l~~~~~~~----~~~~~~-~~l~~L~~L~l~~~~ 615 (658)
.++.. +..+ ..+++|++|++++|.... .+|..+ .++++|+.|++++|+
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 65532 3333 225666666666665443 255544 445666666666654
No 95
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=2.2e-17 Score=177.02 Aligned_cols=284 Identities=18% Similarity=0.180 Sum_probs=160.9
Q ss_pred ceeEeeccCccccccc--cCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCC-CcccccceEEecccCCCC
Q 047214 361 AIEGISLDLSKIKGIN--LDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLD-YLPKNLRYLHWDKYPLRT 437 (658)
Q Consensus 361 ~~~~l~~~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~-~l~~~L~~L~l~~~~l~~ 437 (658)
.++.+.+..+.+.... .....+..+++|+.|++++|.+...... .+...+. ..+ +|++|++++|.++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~--------~l~~~l~~~~~-~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ--------LLCEGLLDPQC-RLEKLQLEYCSLSA 156 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH--------HHHHHHTSTTC-CCCEEECTTSCCBG
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH--------HHHHHHhcCCC-cceEEECCCCCCCH
Confidence 3555555544442211 2245566777777777777776321100 0111111 122 67777777777664
Q ss_pred C-----CCCC-CCCCccEEEecCCCccccc-cccc-----CCCCccEEeccCCCcccc-----cC--CCcCCCccEEEee
Q 047214 438 L-----PSNF-KPENLVELNLHFSKVEQLW-EGKK-----EAFKLKSINLSHCRHFID-----MS--YPSAPNLETYLLD 498 (658)
Q Consensus 438 l-----p~~~-~l~~L~~L~L~~~~i~~l~-~~~~-----~l~~L~~L~l~~~~~~~~-----~~--l~~l~~L~~L~l~ 498 (658)
. +..+ .+++|+.|++++|.+.... ..+. .+++|++|++++|. +.. ++ +..+++|++|+++
T Consensus 157 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls 235 (461)
T 1z7x_W 157 ASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALG 235 (461)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECC
T ss_pred HHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEecc
Confidence 2 2222 4567777777777765321 1111 34577777777774 333 33 5667777888887
Q ss_pred cCCcccc------cccccCCCCCCEEeccCCCCCCc-----CCCCC-CCCCCcEEeccCCCCcc----ccC----cccCC
Q 047214 499 YTNFACV------PSSIQNFKYLSALSFEGCKSLRS-----FPSNF-RFVCPVTINFSSCVNLI----EFP----QISGK 558 (658)
Q Consensus 499 ~~~~~~~------~~~~~~l~~L~~L~l~~~~~l~~-----~~~~~-~~~~L~~L~l~~~~~l~----~~~----~~~~~ 558 (658)
+|.+... +.....+++|++|++++| .++. ++..+ .+++|+.|++++|..-. .+. ...++
T Consensus 236 ~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 314 (461)
T 1z7x_W 236 SNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ 314 (461)
T ss_dssp SSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCC
T ss_pred CCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcc
Confidence 7766442 122335777888888777 4444 33322 46777888887764211 111 12247
Q ss_pred ccEEEcccccccc-----ccccccCCCCCCEEecCCCccchhhhhhhc----C-CCCCcEEeccCCcCCc-----cCC--
Q 047214 559 ITRLYLGQSAIEE-----VPSSIECLTDLEVLDLRDCKRLKRISTRFC----K-LRSLVDLFLHGCLNLQ-----SLP-- 621 (658)
Q Consensus 559 L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~-l~~L~~L~l~~~~~l~-----~l~-- 621 (658)
|+.|++++|.++. ++..+..+++|++|++++|......+..+. . .++|++|++++|. ++ .++
T Consensus 315 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~ 393 (461)
T 1z7x_W 315 LESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAAT 393 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHH
T ss_pred ceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHH
Confidence 7788888777764 344466677888888887764333333222 2 5678888888775 33 333
Q ss_pred --CCCCcccEEeccCCcccc--------ccCCCCCCccEEeccCCC
Q 047214 622 --ALPLCLKSLDLRDCKMLQ--------SLPELPSCLEALDLTSCN 657 (658)
Q Consensus 622 --~l~~~L~~L~l~~~~~l~--------~i~~~~~~L~~L~l~~~~ 657 (658)
.+++ |++|++++|+.-. .+|....+|+.|.+.++.
T Consensus 394 l~~~~~-L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 394 LLANHS-LRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHCCC-CCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHhCCC-ccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 4677 8888888776321 133334457777666543
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.64 E-value=5e-17 Score=169.75 Aligned_cols=219 Identities=16% Similarity=0.117 Sum_probs=113.7
Q ss_pred cCCCCCCcccccceEEecccCCCC-----CCCCC-CCCCccEEEecCCCccc----ccccc-------cCCCCccEEecc
Q 047214 414 LPDGLDYLPKNLRYLHWDKYPLRT-----LPSNF-KPENLVELNLHFSKVEQ----LWEGK-------KEAFKLKSINLS 476 (658)
Q Consensus 414 ~p~~~~~l~~~L~~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~~~i~~----l~~~~-------~~l~~L~~L~l~ 476 (658)
++..+...+ +|++|++++|.+.. ++..+ .+++|++|+|++|.+.. +|..+ ..+++|++|+++
T Consensus 24 l~~~l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 445555555 67777777776653 22223 56677777777764432 23332 566777777777
Q ss_pred CCCccc----ccC--CCcCCCccEEEeecCCccc-----ccccccCC---------CCCCEEeccCCCCCC--cCCC---
Q 047214 477 HCRHFI----DMS--YPSAPNLETYLLDYTNFAC-----VPSSIQNF---------KYLSALSFEGCKSLR--SFPS--- 531 (658)
Q Consensus 477 ~~~~~~----~~~--l~~l~~L~~L~l~~~~~~~-----~~~~~~~l---------~~L~~L~l~~~~~l~--~~~~--- 531 (658)
+|.... .+| +..+++|++|++++|.+.. ++..+..+ ++|++|++++|. ++ .++.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~ 181 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK 181 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHH
Confidence 764222 133 5666777777777766642 22223333 667777776663 32 2221
Q ss_pred -CCCCCCCcEEeccCCCCcc-----ccC---cccCCccEEEcccccc-----ccccccccCCCCCCEEecCCCccchh--
Q 047214 532 -NFRFVCPVTINFSSCVNLI-----EFP---QISGKITRLYLGQSAI-----EEVPSSIECLTDLEVLDLRDCKRLKR-- 595 (658)
Q Consensus 532 -~~~~~~L~~L~l~~~~~l~-----~~~---~~~~~L~~L~l~~~~i-----~~~~~~~~~l~~L~~L~l~~~~~~~~-- 595 (658)
...+++|+.|++++|..-. -.+ ...++|+.|+|++|.+ ..+|..+..+++|++|++++|.....
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 261 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhH
Confidence 1135566666666653210 011 1234555666665555 33444455555666666665553322
Q ss_pred --hhhhh--cCCCCCcEEeccCCcCCcc-----CC-----CCCCcccEEeccCCc
Q 047214 596 --ISTRF--CKLRSLVDLFLHGCLNLQS-----LP-----ALPLCLKSLDLRDCK 636 (658)
Q Consensus 596 --~~~~~--~~l~~L~~L~l~~~~~l~~-----l~-----~l~~~L~~L~l~~~~ 636 (658)
++..+ +.+++|++|++++|. +.. +| .+|+ |++|++++|+
T Consensus 262 ~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~-L~~L~l~~N~ 314 (386)
T 2ca6_A 262 AAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPD-LLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTT-CCEEECTTSB
T ss_pred HHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCC-ceEEEccCCc
Confidence 33334 225556666665554 222 33 2455 5555555555
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=1.7e-15 Score=151.25 Aligned_cols=168 Identities=24% Similarity=0.339 Sum_probs=97.4
Q ss_pred cCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccc
Q 047214 383 TNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWE 462 (658)
Q Consensus 383 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~ 462 (658)
..+++|+.|++++|.+. .++ .+..++ +|++|++++|.++.+++...+++|++|++++|.+..++.
T Consensus 43 ~~l~~L~~L~l~~~~i~-------------~~~-~~~~l~-~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 107 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-------------SVQ-GIQYLP-NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS 107 (291)
T ss_dssp HHHHTCCEEECTTSCCC-------------CCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG
T ss_pred hhcCcccEEEccCCCcc-------------cCh-hHhcCC-CCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChh
Confidence 34566666777666652 222 245555 666666666666666653366666666666666665543
Q ss_pred cccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEE
Q 047214 463 GKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTI 541 (658)
Q Consensus 463 ~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L 541 (658)
+..+++|++|++++| .+..++ +..+++|+.|++++|.+..+ +.+..+++|+.|++++| .+..++....
T Consensus 108 -l~~l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~l~~------- 176 (291)
T 1h6t_A 108 -LKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAG------- 176 (291)
T ss_dssp -GTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGGGTT-------
T ss_pred -hccCCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchhhcC-------
Confidence 556666666666666 344445 55666666666666665555 34555666666666555 3333322222
Q ss_pred eccCCCCccccCcccCCccEEEccccccccccccccCCCCCCEEecCCCc
Q 047214 542 NFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCK 591 (658)
Q Consensus 542 ~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~ 591 (658)
+++|+.|++++|.++.++. +..+++|+.|++++|+
T Consensus 177 --------------l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 177 --------------LTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp --------------CTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred --------------CCccCEEECCCCcCCCChh-hccCCCCCEEECcCCc
Confidence 2344555555555666554 6777788888887775
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=1.2e-15 Score=152.22 Aligned_cols=167 Identities=16% Similarity=0.181 Sum_probs=121.9
Q ss_pred CcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC-CCcCCCccEEEee
Q 047214 420 YLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLD 498 (658)
Q Consensus 420 ~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~ 498 (658)
.++ +|++|++++|.++.+|....+++|++|++++|.+..++. +..+++|++|++++| .+..+| +..+++|++|+++
T Consensus 44 ~l~-~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLE 120 (291)
T ss_dssp HHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECT
T ss_pred hcC-cccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChhhccCCCCCEEECC
Confidence 444 788888888888888765578888888888888887776 778888888888888 456667 8888888888888
Q ss_pred cCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEccccccccccccccC
Q 047214 499 YTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSIEC 578 (658)
Q Consensus 499 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~ 578 (658)
+|.+..++ .+..+++|+.|++++| .++.++....++ +|+.|++++|.++.++. +..
T Consensus 121 ~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~l~---------------------~L~~L~L~~N~l~~~~~-l~~ 176 (291)
T 1h6t_A 121 HNGISDIN-GLVHLPQLESLYLGNN-KITDITVLSRLT---------------------KLDTLSLEDNQISDIVP-LAG 176 (291)
T ss_dssp TSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGGGGGCT---------------------TCSEEECCSSCCCCCGG-GTT
T ss_pred CCcCCCCh-hhcCCCCCCEEEccCC-cCCcchhhccCC---------------------CCCEEEccCCccccchh-hcC
Confidence 88887774 5778888888888877 444443222333 44455555555665555 777
Q ss_pred CCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCc
Q 047214 579 LTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCL 615 (658)
Q Consensus 579 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 615 (658)
+++|+.|++++|. +..++. +..+++|+.|++++|+
T Consensus 177 l~~L~~L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 177 LTKLQNLYLSKNH-ISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp CTTCCEEECCSSC-CCBCGG-GTTCTTCSEEEEEEEE
T ss_pred CCccCEEECCCCc-CCCChh-hccCCCCCEEECcCCc
Confidence 8888888888876 444554 7788888888888765
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=7.3e-15 Score=143.40 Aligned_cols=163 Identities=20% Similarity=0.295 Sum_probs=78.2
Q ss_pred ceEEecccCCCCCCCCCCCCCccEEEecCCCcccccc-cccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCC
Q 047214 426 RYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWE-GKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTN 501 (658)
Q Consensus 426 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~ 501 (658)
+++++++++++.+|..+. .+|+.|+|++|.+..++. .+..+++|++|++++|. +..++ +..+++|++|++++|.
T Consensus 17 ~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc
Confidence 334444444444444332 344444444444443332 24444444444444442 22222 4444444444444444
Q ss_pred cccccc-cccCCCCCCEEeccCCCCCCcCCCC--CCCCCCcEEeccCCCCccccCc----ccCCccEEEccccccccccc
Q 047214 502 FACVPS-SIQNFKYLSALSFEGCKSLRSFPSN--FRFVCPVTINFSSCVNLIEFPQ----ISGKITRLYLGQSAIEEVPS 574 (658)
Q Consensus 502 ~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~~~~~ 574 (658)
+..++. .+..+++|++|++++| .++.++.. ..+++|+.|++++|. +..++. ..++|+.|++++|.+..++.
T Consensus 95 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 95 LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 444432 2344455555555444 33333331 134444444444431 222221 23466677777788877765
Q ss_pred -cccCCCCCCEEecCCCcc
Q 047214 575 -SIECLTDLEVLDLRDCKR 592 (658)
Q Consensus 575 -~~~~l~~L~~L~l~~~~~ 592 (658)
.+..+++|++|++++|+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTTCTTCCEEECCSCCB
T ss_pred HHHhCCCCCCEEEeeCCce
Confidence 467788888888887764
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=2.6e-14 Score=139.45 Aligned_cols=165 Identities=19% Similarity=0.302 Sum_probs=110.3
Q ss_pred CCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecCCCccccccc-
Q 047214 387 NLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQLWEG- 463 (658)
Q Consensus 387 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~~- 463 (658)
..+.++++++.+ ..+|..+. .+++.|++++|++..+++. + .+++|++|+|++|.++.++..
T Consensus 15 ~~~~l~~~~~~l-------------~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 15 GKKEVDCQGKSL-------------DSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp GGTEEECTTCCC-------------SSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCeEEecCCCCc-------------cccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 455677777665 33554443 3777777777777766654 2 677777777777777766554
Q ss_pred ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccccccc-ccCCCCCCEEeccCCCCCCcCCC--CCCCCC
Q 047214 464 KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPSS-IQNFKYLSALSFEGCKSLRSFPS--NFRFVC 537 (658)
Q Consensus 464 ~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~ 537 (658)
+..+++|++|++++|. +..+| +..+++|++|++++|.+..++.. +..+++|++|++++| .++.++. ...+++
T Consensus 79 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 79 FDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcC
Confidence 6677777777777773 44444 67777777777777777777654 567777777777776 5566665 236777
Q ss_pred CcEEeccCCCCccccCc----ccCCccEEEccccccc
Q 047214 538 PVTINFSSCVNLIEFPQ----ISGKITRLYLGQSAIE 570 (658)
Q Consensus 538 L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~~~i~ 570 (658)
|+.|++++|. +..++. .+++|+.|++++|.+.
T Consensus 157 L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCcee
Confidence 7777777764 333332 3456778888877765
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=2.6e-15 Score=164.41 Aligned_cols=168 Identities=16% Similarity=0.175 Sum_probs=123.6
Q ss_pred CCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC-CCcCCCccEEEe
Q 047214 419 DYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLL 497 (658)
Q Consensus 419 ~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l 497 (658)
..++ +|++|++++|.+..+|....+++|+.|+|++|.+..++. +..+++|+.|+|++| .+..+| +..+++|+.|++
T Consensus 40 ~~L~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHHT-TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCTTSTTCTTCCEEEC
T ss_pred hcCC-CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCChhhccCCCCCEEEe
Confidence 3455 788888888888877755577888888888888877766 777788888888877 455666 777778888888
Q ss_pred ecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEcccccccccccccc
Q 047214 498 DYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSIE 577 (658)
Q Consensus 498 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~ 577 (658)
++|.+..++ .+..+++|+.|+|++| .+..++.... +++|+.|+|++|.+..++. +.
T Consensus 117 s~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~l~~---------------------l~~L~~L~Ls~N~l~~~~~-l~ 172 (605)
T 1m9s_A 117 EHNGISDIN-GLVHLPQLESLYLGNN-KITDITVLSR---------------------LTKLDTLSLEDNQISDIVP-LA 172 (605)
T ss_dssp TTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGGGGS---------------------CTTCSEEECCSSCCCCCGG-GT
T ss_pred cCCCCCCCc-cccCCCccCEEECCCC-ccCCchhhcc---------------------cCCCCEEECcCCcCCCchh-hc
Confidence 777777664 4777777777777776 3443322222 3456666666677776665 88
Q ss_pred CCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCc
Q 047214 578 CLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCL 615 (658)
Q Consensus 578 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 615 (658)
.+++|+.|+|++|. +..++ .+..+++|+.|+|++|+
T Consensus 173 ~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 173 GLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCSEE
T ss_pred cCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEccCCc
Confidence 99999999999997 44455 48899999999999976
No 102
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=1.1e-15 Score=157.93 Aligned_cols=232 Identities=14% Similarity=0.104 Sum_probs=154.6
Q ss_pred EEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC-----CC-CCC-CccEEEecCCCcccc-c
Q 047214 390 LLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS-----NF-KPE-NLVELNLHFSKVEQL-W 461 (658)
Q Consensus 390 ~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~-----~~-~l~-~L~~L~L~~~~i~~l-~ 461 (658)
++.++.|.+.+ .+|..+.. +++|++|++++|.+...+. .+ .++ +|++|+|++|.+... +
T Consensus 2 ~~~ls~n~~~~------------~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 68 (362)
T 3goz_A 2 NYKLTLHPGSN------------PVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS 68 (362)
T ss_dssp EEECCCCTTCC------------HHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH
T ss_pred ccccccccchH------------HHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH
Confidence 35667777632 24443333 4379999999999987774 22 666 899999999988854 3
Q ss_pred ccccCC-----CCccEEeccCCCcccccC---C----CcC-CCccEEEeecCCcccccc-----cccC-CCCCCEEeccC
Q 047214 462 EGKKEA-----FKLKSINLSHCRHFIDMS---Y----PSA-PNLETYLLDYTNFACVPS-----SIQN-FKYLSALSFEG 522 (658)
Q Consensus 462 ~~~~~l-----~~L~~L~l~~~~~~~~~~---l----~~l-~~L~~L~l~~~~~~~~~~-----~~~~-l~~L~~L~l~~ 522 (658)
..+..+ ++|++|++++|. ++..+ + ..+ ++|++|++++|.+...+. .+.. .++|++|++++
T Consensus 69 ~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 69 DELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred HHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 334443 889999999995 44333 3 333 789999999988876653 2344 35899999998
Q ss_pred CCCCCcCC-----CCC-CCC-CCcEEeccCCCCccccC-------ccc-CCccEEEcccccccc-----ccccccC-CCC
Q 047214 523 CKSLRSFP-----SNF-RFV-CPVTINFSSCVNLIEFP-------QIS-GKITRLYLGQSAIEE-----VPSSIEC-LTD 581 (658)
Q Consensus 523 ~~~l~~~~-----~~~-~~~-~L~~L~l~~~~~l~~~~-------~~~-~~L~~L~l~~~~i~~-----~~~~~~~-l~~ 581 (658)
| .++... ..+ .++ +|+.|++++|..-...+ ... .+|+.|++++|.+.. ++..+.. .++
T Consensus 148 N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~ 226 (362)
T 3goz_A 148 N-DLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNH 226 (362)
T ss_dssp S-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTT
T ss_pred C-cCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCC
Confidence 7 344211 111 344 88999998875322221 112 588889998888886 5555555 458
Q ss_pred CCEEecCCCccch----hhhhhhcCCCCCcEEeccCCc--CC---------ccCCCCCCcccEEeccCCcc
Q 047214 582 LEVLDLRDCKRLK----RISTRFCKLRSLVDLFLHGCL--NL---------QSLPALPLCLKSLDLRDCKM 637 (658)
Q Consensus 582 L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~--~l---------~~l~~l~~~L~~L~l~~~~~ 637 (658)
|++|++++|.... .+...+..+++|++|++++|. .+ ..++.++. |+.|++++|+.
T Consensus 227 L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~-L~~LdL~~N~l 296 (362)
T 3goz_A 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK-IILVDKNGKEI 296 (362)
T ss_dssp CCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE-EEEECTTSCBC
T ss_pred ceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc-eEEEecCCCcC
Confidence 8899998886433 233445678888999888875 11 13446677 88888888873
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.59 E-value=6.9e-15 Score=161.06 Aligned_cols=146 Identities=21% Similarity=0.261 Sum_probs=124.6
Q ss_pred hcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccc
Q 047214 382 FTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLW 461 (658)
Q Consensus 382 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~ 461 (658)
+..+++|+.|++++|.+. .+| .+..++ +|+.|+|++|.+..+|+...+.+|+.|+|++|.+..+|
T Consensus 39 ~~~L~~L~~L~l~~n~i~-------------~l~-~l~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~ 103 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIK-------------SVQ-GIQYLP-NVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS 103 (605)
T ss_dssp HHHHTTCCCCBCTTCCCC-------------CCT-TGGGCT-TCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT
T ss_pred hhcCCCCCEEECcCCCCC-------------CCh-HHccCC-CCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh
Confidence 557899999999999973 344 577888 99999999999999998559999999999999999876
Q ss_pred ccccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcE
Q 047214 462 EGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVT 540 (658)
Q Consensus 462 ~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~ 540 (658)
.+..+++|+.|++++| .+..++ +..+++|+.|++++|.+..+ ..+..+++|+.|+|++| .+..+++...+++|+.
T Consensus 104 -~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~ 179 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQN 179 (605)
T ss_dssp -TSTTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGGGTTCTTCCE
T ss_pred -hhccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchhhccCCCCCE
Confidence 6889999999999999 566678 99999999999999999888 57999999999999998 5566555556777777
Q ss_pred EeccCC
Q 047214 541 INFSSC 546 (658)
Q Consensus 541 L~l~~~ 546 (658)
|++++|
T Consensus 180 L~Ls~N 185 (605)
T 1m9s_A 180 LYLSKN 185 (605)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 777665
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=2e-16 Score=175.14 Aligned_cols=265 Identities=13% Similarity=0.019 Sum_probs=141.9
Q ss_pred cCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC-----CC-CCCCccEEEecCCC
Q 047214 383 TNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS-----NF-KPENLVELNLHFSK 456 (658)
Q Consensus 383 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~-----~~-~l~~L~~L~L~~~~ 456 (658)
.++++|++|++++|.+.+.... -++.....++ +|++|++++|.+..+.. .+ .+++|+.|++++|.
T Consensus 161 ~~~~~L~~L~L~~~~~~~~~~~--------~l~~~~~~~~-~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 161 THCRKIKTLLMEESSFSEKDGK--------WLHELAQHNT-SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp HHCTTCSEEECTTCEEECCCSH--------HHHHHHHHCC-CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred hhCCCCCEEECccccccCcchh--------HHHHHHhcCC-CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 3567777777777765221100 0111223344 67777776666653321 12 46667777777766
Q ss_pred cccccccccCCCCccEEeccCCCcc---cccC--CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCc---
Q 047214 457 VEQLWEGKKEAFKLKSINLSHCRHF---IDMS--YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRS--- 528 (658)
Q Consensus 457 i~~l~~~~~~l~~L~~L~l~~~~~~---~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--- 528 (658)
+..+|..+..+++|+.|+++++... ...+ +..+++|+.|++..+....+|..+..+++|++|++++|. ++.
T Consensus 232 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~ 310 (592)
T 3ogk_B 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDH 310 (592)
T ss_dssp GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHH
T ss_pred HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHH
Confidence 6666655666666666666532211 0111 344444444444443333334334444444444444443 211
Q ss_pred -----------------------CCCC-CCCCCCcEEeccC----------CCCccc-----cCcccCCccEEEcccccc
Q 047214 529 -----------------------FPSN-FRFVCPVTINFSS----------CVNLIE-----FPQISGKITRLYLGQSAI 569 (658)
Q Consensus 529 -----------------------~~~~-~~~~~L~~L~l~~----------~~~l~~-----~~~~~~~L~~L~l~~~~i 569 (658)
++.. ..+++|+.|++++ |..++. +...+++|++|++.++.+
T Consensus 311 ~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l 390 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390 (592)
T ss_dssp HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence 1111 1356677777774 544432 122356777777777766
Q ss_pred ccc-ccccc-CCCCCCEEecCC---Cccchh------hhhhhcCCCCCcEEeccCCcC-Ccc-----CC-CCCCcccEEe
Q 047214 570 EEV-PSSIE-CLTDLEVLDLRD---CKRLKR------ISTRFCKLRSLVDLFLHGCLN-LQS-----LP-ALPLCLKSLD 631 (658)
Q Consensus 570 ~~~-~~~~~-~l~~L~~L~l~~---~~~~~~------~~~~~~~l~~L~~L~l~~~~~-l~~-----l~-~l~~~L~~L~ 631 (658)
+.. +..+. .+++|++|++++ |..+.. ++..+.++++|+.|++++|.. +.. +. .+|+ |++|+
T Consensus 391 ~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~-L~~L~ 469 (592)
T 3ogk_B 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPN-VRWML 469 (592)
T ss_dssp CHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTT-CCEEE
T ss_pred cHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCcc-ceEee
Confidence 632 22233 377888888863 333332 444466688888888876653 221 11 3777 99999
Q ss_pred ccCCcccc-ccC---CCCCCccEEeccCCCC
Q 047214 632 LRDCKMLQ-SLP---ELPSCLEALDLTSCNM 658 (658)
Q Consensus 632 l~~~~~l~-~i~---~~~~~L~~L~l~~~~~ 658 (658)
+++|..-. .++ ...++|+.|+|++|++
T Consensus 470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp ECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred ccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 99887321 122 3567899999999874
No 105
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.56 E-value=2.4e-14 Score=150.85 Aligned_cols=277 Identities=12% Similarity=0.025 Sum_probs=157.0
Q ss_pred CCCCcccccchHhhHHHHh-ccc-CC--CCeEEEEE--EcCCCCcHHHHHHHHHHhhccc-----cC-ceEEEecccccc
Q 047214 26 SSNGLVGLNSRIEQIKPFL-CMD-LS--DTVQIVGI--WGMGGIGKTTLATAIFNQFSSE-----FE-GRCFLSDIRKNS 93 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l-~~~-~~--~~~~vv~i--~G~~GvGKTtLa~~~~~~~~~~-----f~-~~~~~~~~~~~~ 93 (658)
.+..|+||+.+++++.+++ ... .+ ...+.+.| +|++|+|||+||+++++..... +. .++|+.+.....
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3478999999999999998 521 11 23567777 9999999999999999986542 22 245555222211
Q ss_pred ccchhhHhHHHhhhcCC--C--C---chhHHHHhc--CcceEEEEeCCCCch--------hhhhhhcccCCC---C--CC
Q 047214 94 ETGGGKILSEKLEVAGA--N--I---PHFTKERVR--RMKVLIVLDDVNEVG--------QLEGLIGELDQF---G--PG 151 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~--~--~---~~~l~~~l~--~~~~LlvlDdv~~~~--------~~~~l~~~l~~~---~--~~ 151 (658)
....+..+...++.... . . .+.+.+.+. +++++|||||++... .+..+...+... + ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 11111222222222111 1 1 234444554 568999999997643 233333333211 2 34
Q ss_pred CEEEEEecchHHHHh-------h-cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC------CCc
Q 047214 152 SRIVVTTRDKRVLEK-------F-RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYAD------GNP 217 (658)
Q Consensus 152 ~~ilvttR~~~~~~~-------~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~------g~P 217 (658)
..+|+||+....... . ......+.+.+++.+++.++|..++..........++.+..+++.++ |+|
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcH
Confidence 557888876543211 1 11223499999999999999976542111111122456788999999 999
Q ss_pred chhHHhhcccc------cc---cHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeeecC----CCCCH
Q 047214 218 LVPKVLGSSLC------LK---RKSHWENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIACFF----EGEDK 284 (658)
Q Consensus 218 lai~~~a~~l~------~~---~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp----~~~~~ 284 (658)
..+..++.... +. +...+..+...... ...+.-++..||+..+.++..+|.+. ..+..
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~ 330 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGMEWINA 330 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccH
Confidence 76555443211 00 12222222221100 23345567889999999999888753 23444
Q ss_pred HHH-------H-HHhcc------ccccchHHhhhccCceee
Q 047214 285 DFV-------A-RILDD------SESDGLDVLIDKSLISIS 311 (658)
Q Consensus 285 ~~l-------~-~~~~~------~~~~~l~~L~~~~ll~~~ 311 (658)
..+ . ..... ....+++.|++.++|...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 331 GLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp HHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 332 2 22211 235678999999999765
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.56 E-value=1.4e-14 Score=135.67 Aligned_cols=147 Identities=15% Similarity=0.156 Sum_probs=111.8
Q ss_pred cCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccc-cc
Q 047214 383 TNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQ-LW 461 (658)
Q Consensus 383 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~-l~ 461 (658)
..+++|+.|++++|.+ ..+| .+..++ +|++|++++|.+..++....+++|++|++++|.+.. .|
T Consensus 41 ~~l~~L~~L~l~~n~i-------------~~l~-~l~~l~-~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 105 (197)
T 4ezg_A 41 AQMNSLTYITLANINV-------------TDLT-GIEYAH-NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKI 105 (197)
T ss_dssp HHHHTCCEEEEESSCC-------------SCCT-TGGGCT-TCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGS
T ss_pred hhcCCccEEeccCCCc-------------cChH-HHhcCC-CCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccC
Confidence 4567888999999887 2455 577777 899999988888877755588889999998888875 56
Q ss_pred ccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCC-cccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCC
Q 047214 462 EGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTN-FACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCP 538 (658)
Q Consensus 462 ~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L 538 (658)
..+..+++|++|++++|......+ ++.+++|++|++++|. +..+| .+..+++|++|++++| .+..++....+++|
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L 183 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRGIEDFPKL 183 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTTGGGCSSC
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHHhccCCCC
Confidence 778888888888888885433344 7888888888888886 77776 5788888888888877 46666654466666
Q ss_pred cEEeccCC
Q 047214 539 VTINFSSC 546 (658)
Q Consensus 539 ~~L~l~~~ 546 (658)
+.|++++|
T Consensus 184 ~~L~l~~N 191 (197)
T 4ezg_A 184 NQLYAFSQ 191 (197)
T ss_dssp CEEEECBC
T ss_pred CEEEeeCc
Confidence 66666654
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.56 E-value=4.2e-14 Score=133.75 Aligned_cols=151 Identities=19% Similarity=0.222 Sum_probs=106.1
Q ss_pred ccceEEecccCCCCCCCCC--CCCCccEEEecCCCccccccc-ccCCCCccEEeccCCCcccccC---CCcCCCccEEEe
Q 047214 424 NLRYLHWDKYPLRTLPSNF--KPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLL 497 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l 497 (658)
++++|++++|.++.+|... .+++|++|++++|.++.+|.. +..+++|++|++++| .+..+| +..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEEEc
Confidence 7888888888888777653 788888888888888877665 577888888888888 344555 678888888888
Q ss_pred ecCCccccccc-ccCCCCCCEEeccCCCCCCcCCCC--CCCCCCcEEeccCCCCccccCcccCCccEEEccccccc-ccc
Q 047214 498 DYTNFACVPSS-IQNFKYLSALSFEGCKSLRSFPSN--FRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIE-EVP 573 (658)
Q Consensus 498 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~-~~~ 573 (658)
++|.+..++.. +..+++|++|++++| .++.++.. ..+++|+.|++++|.... .+++|+.|+++.|.++ .+|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~----~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC----TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCC----CTTTTHHHHHHHHHCTTTBB
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeec----CCCCHHHHHHHHHhCCceee
Confidence 88888777654 677888888888877 45566553 257777777777764322 2235556666555555 555
Q ss_pred ccccCCC
Q 047214 574 SSIECLT 580 (658)
Q Consensus 574 ~~~~~l~ 580 (658)
.+++.++
T Consensus 183 ~~~~~l~ 189 (208)
T 2o6s_A 183 NSAGSVA 189 (208)
T ss_dssp CTTSSBC
T ss_pred ccCcccc
Confidence 5444443
No 108
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=1.3e-15 Score=168.56 Aligned_cols=257 Identities=14% Similarity=0.048 Sum_probs=140.1
Q ss_pred hhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCC----CCCCCC-CCCCccEEEecCC
Q 047214 381 AFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLR----TLPSNF-KPENLVELNLHFS 455 (658)
Q Consensus 381 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~----~lp~~~-~l~~L~~L~L~~~ 455 (658)
.+.++++|+.|++++|.+.+ +|..+..++ +|++|+++.+... ..+..+ .+++|+.|+++.+
T Consensus 215 ~~~~~~~L~~L~L~~~~~~~-------------l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 280 (592)
T 3ogk_B 215 IARNCRSLVSVKVGDFEILE-------------LVGFFKAAA-NLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM 280 (592)
T ss_dssp HHHHCTTCCEEECSSCBGGG-------------GHHHHHHCT-TCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC
T ss_pred HHhhCCCCcEEeccCccHHH-------------HHHHHhhhh-HHHhhcccccccccchHHHHHHhhccccccccCcccc
Confidence 34566777777777776522 444455555 6777777643221 111222 5667777777776
Q ss_pred CcccccccccCCCCccEEeccCCCcccccC----CCcCCCccEEEeecCCcc--cccccccCCCCCCEEeccC-------
Q 047214 456 KVEQLWEGKKEAFKLKSINLSHCRHFIDMS----YPSAPNLETYLLDYTNFA--CVPSSIQNFKYLSALSFEG------- 522 (658)
Q Consensus 456 ~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~----l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~l~~------- 522 (658)
....+|..+..+++|++|++++|. +.... +..+++|++|++. +.+. .++.....+++|++|++++
T Consensus 281 ~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~ 358 (592)
T 3ogk_B 281 GPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGM 358 (592)
T ss_dssp CTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTT
T ss_pred chhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccc
Confidence 555666666677777888887775 32222 4677777777777 3332 2333345667777777773
Q ss_pred ---CCCCCcC--CCC-CCCCCCcEEeccCCCCccc-----cCcccCCccEEEcc----cccccccc------ccccCCCC
Q 047214 523 ---CKSLRSF--PSN-FRFVCPVTINFSSCVNLIE-----FPQISGKITRLYLG----QSAIEEVP------SSIECLTD 581 (658)
Q Consensus 523 ---~~~l~~~--~~~-~~~~~L~~L~l~~~~~l~~-----~~~~~~~L~~L~l~----~~~i~~~~------~~~~~l~~ 581 (658)
|..++.. +.. ..+++|++|++.. ..++. +...+++|+.|+++ ++.++..| ..+.++++
T Consensus 359 ~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~ 437 (592)
T 3ogk_B 359 EDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437 (592)
T ss_dssp SSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT
T ss_pred ccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC
Confidence 4444331 111 1366777777733 23321 11234567777764 44555432 22455667
Q ss_pred CCEEecCCCcc--chhhhhhh-cCCCCCcEEeccCCcCCcc--C----CCCCCcccEEeccCCccccc--cCC---CCCC
Q 047214 582 LEVLDLRDCKR--LKRISTRF-CKLRSLVDLFLHGCLNLQS--L----PALPLCLKSLDLRDCKMLQS--LPE---LPSC 647 (658)
Q Consensus 582 L~~L~l~~~~~--~~~~~~~~-~~l~~L~~L~l~~~~~l~~--l----~~l~~~L~~L~l~~~~~l~~--i~~---~~~~ 647 (658)
|++|++++|.. ....+..+ ..+++|+.|++++|. ++. + .++++ |++|++++|+ ++. ++. .+++
T Consensus 438 L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~-L~~L~l~~n~-l~~~~~~~~~~~l~~ 514 (592)
T 3ogk_B 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPN-LQKLEMRGCC-FSERAIAAAVTKLPS 514 (592)
T ss_dssp CCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTT-CCEEEEESCC-CBHHHHHHHHHHCSS
T ss_pred CCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcc-cCeeeccCCC-CcHHHHHHHHHhcCc
Confidence 77777765442 12222222 336667777776654 221 1 24566 7777777666 321 221 3456
Q ss_pred ccEEeccCCC
Q 047214 648 LEALDLTSCN 657 (658)
Q Consensus 648 L~~L~l~~~~ 657 (658)
|+.|+|++|+
T Consensus 515 L~~L~ls~n~ 524 (592)
T 3ogk_B 515 LRYLWVQGYR 524 (592)
T ss_dssp CCEEEEESCB
T ss_pred cCeeECcCCc
Confidence 6677766665
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=1.3e-15 Score=157.34 Aligned_cols=226 Identities=15% Similarity=0.168 Sum_probs=157.5
Q ss_pred chhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-C-----CCCccEEE
Q 047214 379 SGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-K-----PENLVELN 451 (658)
Q Consensus 379 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~-----l~~L~~L~ 451 (658)
...+...++|+.|++++|.+.+.+.. .+...+..++.+|++|++++|.+...... + . ..+|++|+
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~--------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~ 86 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTV--------ELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLN 86 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHH--------HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEE
T ss_pred HHHHhCCCCceEEEccCCCCChHHHH--------HHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEE
Confidence 34455566699999999987443211 11144555555799999999988865432 2 2 28899999
Q ss_pred ecCCCccccccc-----ccCC-CCccEEeccCCCcccccC-------CCc-CCCccEEEeecCCccc-----ccccccCC
Q 047214 452 LHFSKVEQLWEG-----KKEA-FKLKSINLSHCRHFIDMS-------YPS-APNLETYLLDYTNFAC-----VPSSIQNF 512 (658)
Q Consensus 452 L~~~~i~~l~~~-----~~~l-~~L~~L~l~~~~~~~~~~-------l~~-l~~L~~L~l~~~~~~~-----~~~~~~~l 512 (658)
|++|.+...+.. +..+ ++|++|++++|. ++..+ +.. .++|++|++++|.+.. ++..+..+
T Consensus 87 Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 165 (362)
T 3goz_A 87 LSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAI 165 (362)
T ss_dssp CCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred CcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcC
Confidence 999988754432 4455 789999999995 45444 233 3689999999988863 44455666
Q ss_pred C-CCCEEeccCCCCCCcCCC-----C-CCC-CCCcEEeccCCCCccc-----cCc----ccCCccEEEccccccccccc-
Q 047214 513 K-YLSALSFEGCKSLRSFPS-----N-FRF-VCPVTINFSSCVNLIE-----FPQ----ISGKITRLYLGQSAIEEVPS- 574 (658)
Q Consensus 513 ~-~L~~L~l~~~~~l~~~~~-----~-~~~-~~L~~L~l~~~~~l~~-----~~~----~~~~L~~L~l~~~~i~~~~~- 574 (658)
+ +|++|++++| .++.... . ..+ ++|+.|++++|. ++. ++. ..++|+.|++++|.+...+.
T Consensus 166 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 243 (362)
T 3goz_A 166 PANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE 243 (362)
T ss_dssp CTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred CccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence 5 8999999988 4544332 1 134 589999999885 333 333 23589999999999886543
Q ss_pred ----cccCCCCCCEEecCCCc-------cchhhhhhhcCCCCCcEEeccCCc
Q 047214 575 ----SIECLTDLEVLDLRDCK-------RLKRISTRFCKLRSLVDLFLHGCL 615 (658)
Q Consensus 575 ----~~~~l~~L~~L~l~~~~-------~~~~~~~~~~~l~~L~~L~l~~~~ 615 (658)
.+..+++|++|++++|. ....++..+..+++|+.|++++|+
T Consensus 244 ~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 244 NLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 35788999999999986 134455667788999999999977
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=5.3e-14 Score=131.69 Aligned_cols=148 Identities=16% Similarity=0.120 Sum_probs=85.9
Q ss_pred CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEcc
Q 047214 486 YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLG 565 (658)
Q Consensus 486 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~ 565 (658)
.+.+++|+.|+++++.+..+| .+..+++|++|++++| .+..++....+++|+.|++++
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~-------------------- 97 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMG-------------------- 97 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEEC--------------------
T ss_pred hhhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeEC--------------------
Confidence 445666777777777776666 5667777777777766 444444333444444444444
Q ss_pred cccccc-ccccccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEeccCCcCCccCC---CCCCcccEEeccCCcccccc
Q 047214 566 QSAIEE-VPSSIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFLHGCLNLQSLP---ALPLCLKSLDLRDCKMLQSL 641 (658)
Q Consensus 566 ~~~i~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~---~l~~~L~~L~l~~~~~l~~i 641 (658)
|.+.. .+..+..+++|++|++++|......+..++.+++|++|++++|..++.+| .+|+ |++|++++|. ++.+
T Consensus 98 -n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~-L~~L~l~~n~-i~~~ 174 (197)
T 4ezg_A 98 -KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPE-LKSLNIQFDG-VHDY 174 (197)
T ss_dssp -TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSS-CCEEECTTBC-CCCC
T ss_pred -CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCC-CCEEECCCCC-CcCh
Confidence 33332 33345566666666666666544455556666666666666665444444 4566 6666666665 4444
Q ss_pred CC--CCCCccEEeccCCCC
Q 047214 642 PE--LPSCLEALDLTSCNM 658 (658)
Q Consensus 642 ~~--~~~~L~~L~l~~~~~ 658 (658)
+. .+++|+.|++++|++
T Consensus 175 ~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 175 RGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp TTGGGCSSCCEEEECBC--
T ss_pred HHhccCCCCCEEEeeCccc
Confidence 42 456677777777654
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.52 E-value=1.2e-14 Score=142.65 Aligned_cols=147 Identities=22% Similarity=0.249 Sum_probs=83.2
Q ss_pred CCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC-CCcCCCccEEE
Q 047214 418 LDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYL 496 (658)
Q Consensus 418 ~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~ 496 (658)
+..++ +|++|++++|.++.+|....+.+|++|++++|.+..++. +..+++|++|++++| .+..+| +.. ++|++|+
T Consensus 37 ~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~-~~L~~L~ 112 (263)
T 1xeu_A 37 QKELS-GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS-ACLSRLF 112 (263)
T ss_dssp HHHHT-TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC-SSCCEEE
T ss_pred hhhcC-cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcccc-CcccEEE
Confidence 34444 666666666666666533355666666666666665555 555666666666665 344444 333 5566666
Q ss_pred eecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcccCCccEEEccccccccccccc
Q 047214 497 LDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSI 576 (658)
Q Consensus 497 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~ 576 (658)
+++|.+..++ .+..+++|+.|++++| .++.++.... +++|+.|++++|.+..+ ..+
T Consensus 113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~l~~---------------------l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 113 LDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVMLGF---------------------LSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp CCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGGGGG---------------------CTTCCEEECTTSCCCBC-TTS
T ss_pred ccCCccCCCh-hhcCcccccEEECCCC-cCCCChHHcc---------------------CCCCCEEECCCCcCcch-HHh
Confidence 6655555543 3555555555555554 2333322112 34555556666666655 446
Q ss_pred cCCCCCCEEecCCCcc
Q 047214 577 ECLTDLEVLDLRDCKR 592 (658)
Q Consensus 577 ~~l~~L~~L~l~~~~~ 592 (658)
..+++|+.|++++|+.
T Consensus 169 ~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TTCCCCCEEEEEEEEE
T ss_pred ccCCCCCEEeCCCCcc
Confidence 7788888888888763
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=7e-14 Score=137.16 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=124.0
Q ss_pred hhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCcccc
Q 047214 381 AFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQL 460 (658)
Q Consensus 381 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l 460 (658)
.+..+++|++|++++|.+ ..+| .+..++ +|++|++++|.++.+|+...+++|++|++++|.++.+
T Consensus 36 ~~~~l~~L~~L~l~~n~i-------------~~l~-~l~~l~-~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNI-------------QSLA-GMQFFT-NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp CHHHHTTCSEEECTTSCC-------------CCCT-TGGGCT-TCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCC
T ss_pred chhhcCcCcEEECcCCCc-------------ccch-HHhhCC-CCCEEECCCCccCCChhhccCCCCCEEECCCCccCCc
Confidence 466789999999999997 3355 677777 9999999999999999844999999999999999988
Q ss_pred cccccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCc
Q 047214 461 WEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPV 539 (658)
Q Consensus 461 ~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~ 539 (658)
|.... .+|++|++++| .+..++ ++.+++|++|++++|.+..++ .+..+++|+.|++++| .+..++....+++|+
T Consensus 101 ~~~~~--~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~ 175 (263)
T 1xeu_A 101 NGIPS--ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNTGGLTRLKKVN 175 (263)
T ss_dssp TTCCC--SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBCTTSTTCCCCC
T ss_pred Ccccc--CcccEEEccCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcchHHhccCCCCC
Confidence 76444 89999999999 567778 999999999999999999986 6899999999999998 566665555677777
Q ss_pred EEeccCCC
Q 047214 540 TINFSSCV 547 (658)
Q Consensus 540 ~L~l~~~~ 547 (658)
.|++++|.
T Consensus 176 ~L~l~~N~ 183 (263)
T 1xeu_A 176 WIDLTGQK 183 (263)
T ss_dssp EEEEEEEE
T ss_pred EEeCCCCc
Confidence 77777653
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.1e-13 Score=130.69 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=129.8
Q ss_pred CCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC--CCCCccEEEecCCCcccccc
Q 047214 385 MSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF--KPENLVELNLHFSKVEQLWE 462 (658)
Q Consensus 385 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~ 462 (658)
.++|++|++++|.+.+ ..+..+..++ +|++|++++|.++.+|... .+.+|++|++++|.++.+|.
T Consensus 27 ~~~l~~L~l~~n~l~~------------~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKS------------LPNGVFDELT-SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp CTTCSEEECCSSCCCC------------CCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCCcEEEcCCCccCc------------CChhhhcccc-cCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 4689999999999832 2334567777 9999999999999998764 89999999999999998887
Q ss_pred c-ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccccccc-ccCCCCCCEEeccCCCCCCcCCCCCCCCC
Q 047214 463 G-KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPSS-IQNFKYLSALSFEGCKSLRSFPSNFRFVC 537 (658)
Q Consensus 463 ~-~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 537 (658)
. +..+++|++|++++| .+..++ +..+++|++|++++|.+..++.. +..+++|++|++++|... ..+++
T Consensus 94 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~ 166 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPG 166 (208)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTT
T ss_pred hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCC
Confidence 6 689999999999999 455665 78999999999999999888764 788999999999998432 34678
Q ss_pred CcEEeccCCCCccccCcccCCccE
Q 047214 538 PVTINFSSCVNLIEFPQISGKITR 561 (658)
Q Consensus 538 L~~L~l~~~~~l~~~~~~~~~L~~ 561 (658)
|+.|+++.+...+.+|..++++..
T Consensus 167 l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 167 IRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp THHHHHHHHHCTTTBBCTTSSBCT
T ss_pred HHHHHHHHHhCCceeeccCccccC
Confidence 899988887767778877666553
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.48 E-value=5.3e-13 Score=128.01 Aligned_cols=142 Identities=17% Similarity=0.229 Sum_probs=106.9
Q ss_pred CcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecCCCccccccc-c
Q 047214 388 LRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQLWEG-K 464 (658)
Q Consensus 388 L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~~-~ 464 (658)
.+.++.+++.+ ..+|..+. .+|++|++++|.+..+++. + .+.+|++|+|++|.+..+|.. +
T Consensus 21 ~~~v~c~~~~l-------------~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 84 (229)
T 3e6j_A 21 GTTVDCRSKRH-------------ASVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVF 84 (229)
T ss_dssp TTEEECTTSCC-------------SSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCEeEccCCCc-------------CccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhc
Confidence 45677777665 34555443 3888888888888877543 3 788888888888888887765 5
Q ss_pred cCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCC--CCCCCCc
Q 047214 465 KEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSN--FRFVCPV 539 (658)
Q Consensus 465 ~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~ 539 (658)
..+++|++|++++| .+..++ +..+++|++|++++|.+..+|..+..+++|++|++++| .+..++.. ..+++|+
T Consensus 85 ~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 85 DSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ccCCCcCEEECCCC-cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCC
Confidence 78888888888888 455555 67888888888888888888888888888888888887 56666642 2577777
Q ss_pred EEeccCCC
Q 047214 540 TINFSSCV 547 (658)
Q Consensus 540 ~L~l~~~~ 547 (658)
.|++++|+
T Consensus 163 ~L~l~~N~ 170 (229)
T 3e6j_A 163 HAYLFGNP 170 (229)
T ss_dssp EEECTTSC
T ss_pred EEEeeCCC
Confidence 77777764
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=7.1e-13 Score=126.22 Aligned_cols=141 Identities=16% Similarity=0.303 Sum_probs=101.7
Q ss_pred cEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecCCCcccc-ccccc
Q 047214 389 RLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQL-WEGKK 465 (658)
Q Consensus 389 ~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l-~~~~~ 465 (658)
+.++++++.+ ..+|..+. .+++.|++++|.++.+|+. + .+++|++|+|++|.+..+ |..+.
T Consensus 14 ~~v~c~~~~l-------------~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKGL-------------TEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77 (220)
T ss_dssp TEEECTTSCC-------------SSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CEEEcCCCCc-------------CcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh
Confidence 4666777665 34555443 3788888888888877764 3 778888888888888876 55688
Q ss_pred CCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccccc-ccccCCCCCCEEeccCCCCCCcCCCC-C-CCCCCc
Q 047214 466 EAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVP-SSIQNFKYLSALSFEGCKSLRSFPSN-F-RFVCPV 539 (658)
Q Consensus 466 ~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~-~-~~~~L~ 539 (658)
.+++|++|++++| .+..+| +.++++|++|++++|.+..++ ..+..+++|++|++++| .++.++.. + .+++|+
T Consensus 78 ~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 78 GLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp TCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCC
T ss_pred CCcCCCEEECCCC-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCC
Confidence 8888888888888 455666 677888888888888887764 46778888888888877 45555542 2 566777
Q ss_pred EEeccCCC
Q 047214 540 TINFSSCV 547 (658)
Q Consensus 540 ~L~l~~~~ 547 (658)
.|++++|+
T Consensus 156 ~L~L~~N~ 163 (220)
T 2v9t_B 156 TMHLAQNP 163 (220)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 77776653
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=9.4e-13 Score=125.39 Aligned_cols=144 Identities=15% Similarity=0.254 Sum_probs=110.4
Q ss_pred cceEEecccCCCCCCCCCCCCCccEEEecCCCcccccc-cccCCCCccEEeccCCCccccc-C--CCcCCCccEEEeecC
Q 047214 425 LRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWE-GKKEAFKLKSINLSHCRHFIDM-S--YPSAPNLETYLLDYT 500 (658)
Q Consensus 425 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~-~--l~~l~~L~~L~l~~~ 500 (658)
-+.+++++++++.+|..+. .+|+.|++++|.++.++. .+..+++|+.|++++|. +..+ | +.++++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC
Confidence 3568888999999998765 789999999999998876 58889999999999985 4444 4 888899999999998
Q ss_pred Cccccccc-ccCCCCCCEEeccCCCCCCcCCC-CC-CCCCCcEEeccCCCCccccCcccCCccEEEcccccccccccc-c
Q 047214 501 NFACVPSS-IQNFKYLSALSFEGCKSLRSFPS-NF-RFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSS-I 576 (658)
Q Consensus 501 ~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~-~~-~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~-~ 576 (658)
.+..+|.. +..+++|++|++++| .+..++. .+ .+ ++|+.|++++|.++.++.. +
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l---------------------~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDL---------------------HNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTC---------------------TTCCEEECCSSCCSCCCTTTT
T ss_pred cCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCC---------------------CCCCEEECCCCcCCEECHHHH
Confidence 88888765 577888899988887 4444432 11 33 3455556666666666654 7
Q ss_pred cCCCCCCEEecCCCcc
Q 047214 577 ECLTDLEVLDLRDCKR 592 (658)
Q Consensus 577 ~~l~~L~~L~l~~~~~ 592 (658)
..+++|++|++++|+.
T Consensus 149 ~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 149 SPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred hCCCCCCEEEeCCCCc
Confidence 7889999999999874
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=1.1e-12 Score=125.94 Aligned_cols=126 Identities=19% Similarity=0.237 Sum_probs=112.3
Q ss_pred CCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC--CCCCccEEEecCCCccccccc
Q 047214 386 SNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF--KPENLVELNLHFSKVEQLWEG 463 (658)
Q Consensus 386 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~~ 463 (658)
++|++|++++|.+.+ ..|..+..++ +|++|++++|.+..+|... .+.+|++|+|++|.++.++..
T Consensus 40 ~~L~~L~Ls~n~i~~------------~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 40 TNAQILYLHDNQITK------------LEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp TTCSEEECCSSCCCC------------CCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCEEEcCCCccCc------------cCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChh
Confidence 899999999999843 3577788888 9999999999999998764 899999999999999998876
Q ss_pred -ccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcccccc-cccCCCCCCEEeccCCCC
Q 047214 464 -KKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFACVPS-SIQNFKYLSALSFEGCKS 525 (658)
Q Consensus 464 -~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~ 525 (658)
+..+++|++|++++| .+..+| +..+++|++|++++|.+..++. .+..+++|+.|++++|..
T Consensus 107 ~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTCTTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred HhCcchhhCeEeccCC-cccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 688999999999999 566888 8999999999999999999875 588999999999999853
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=1.2e-12 Score=124.76 Aligned_cols=144 Identities=20% Similarity=0.294 Sum_probs=92.3
Q ss_pred ceEEecccCCCCCCCCCCCCCccEEEecCCCcccccc--cccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecC
Q 047214 426 RYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWE--GKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYT 500 (658)
Q Consensus 426 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~ 500 (658)
+.++++++.++.+|..+ ...+++|+|++|.++.++. .+..+++|++|++++|. +..++ ++++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCC
Confidence 45666666666666654 2345677777777776632 25667777777777763 44443 677777777777777
Q ss_pred Ccccccc-cccCCCCCCEEeccCCCCCCcCC-CCC-CCCCCcEEeccCCCCccccCcccCCccEEEccccccccc-cccc
Q 047214 501 NFACVPS-SIQNFKYLSALSFEGCKSLRSFP-SNF-RFVCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEV-PSSI 576 (658)
Q Consensus 501 ~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~-~~~-~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~-~~~~ 576 (658)
.+..++. .+..+++|++|++++| .+..++ ..+ .++ +|+.|++++|.++.+ |..+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~---------------------~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLS---------------------SVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCT---------------------TCSEEECTTSCCCCBCTTTT
T ss_pred ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCc---------------------cCCEEECCCCcCCEECHHHh
Confidence 7776654 3677777788877776 344332 211 233 444555555566655 4567
Q ss_pred cCCCCCCEEecCCCccc
Q 047214 577 ECLTDLEVLDLRDCKRL 593 (658)
Q Consensus 577 ~~l~~L~~L~l~~~~~~ 593 (658)
..+++|++|++++|+..
T Consensus 150 ~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCCEEECCSCCEE
T ss_pred cCCCCCCEEEecCcCCc
Confidence 88999999999998743
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=9.1e-15 Score=161.91 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=58.7
Q ss_pred cCCccEEEcc--c----ccccccc------ccccCCCCCCEEecCCCccchhhhhhhcC-CCCCcEEeccCCcCCccC--
Q 047214 556 SGKITRLYLG--Q----SAIEEVP------SSIECLTDLEVLDLRDCKRLKRISTRFCK-LRSLVDLFLHGCLNLQSL-- 620 (658)
Q Consensus 556 ~~~L~~L~l~--~----~~i~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~l~~l-- 620 (658)
+++|+.|+++ + +.++..| ..+..+++|++|++++ ......+..+.. +++|+.|++++|. +...
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~ 473 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM 473 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHH
Confidence 4566666666 2 3444222 1245566777777765 222222333333 7778888887776 3211
Q ss_pred ----CCCCCcccEEeccCCccccc----cCCCCCCccEEeccCCCC
Q 047214 621 ----PALPLCLKSLDLRDCKMLQS----LPELPSCLEALDLTSCNM 658 (658)
Q Consensus 621 ----~~l~~~L~~L~l~~~~~l~~----i~~~~~~L~~L~l~~~~~ 658 (658)
.++|+ |++|++++|+.... +...+++|+.|++++|++
T Consensus 474 ~~l~~~~~~-L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 474 HHVLSGCDS-LRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTT-CCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhcCCC-cCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 14688 99999999885211 112457899999999874
No 120
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=6.9e-13 Score=138.19 Aligned_cols=273 Identities=12% Similarity=0.069 Sum_probs=158.4
Q ss_pred CCcccccchHhhHHHHhccc-CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc--------cCceEEEecccccc-ccc-
Q 047214 28 NGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE--------FEGRCFLSDIRKNS-ETG- 96 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~-~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~--------f~~~~~~~~~~~~~-~~~- 96 (658)
..|+||+++++++.+++... .+...+.+.|+|++|+|||++|+.+++..... ....+|+. ..... ...
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~ 98 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CREVGGTPQA 98 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE-HHHHCSCHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE-CccCCCCHHH
Confidence 67999999999999888642 11446789999999999999999999986432 23445555 22211 111
Q ss_pred hh-hHhHHHhhhc----CCCC---chhHHHHhcCcceEEEEeCCCCchh--hhhh-hcccCCCCCCCEEEEEecchHH--
Q 047214 97 GG-KILSEKLEVA----GANI---PHFTKERVRRMKVLIVLDDVNEVGQ--LEGL-IGELDQFGPGSRIVVTTRDKRV-- 163 (658)
Q Consensus 97 ~~-~~l~~~l~~~----~~~~---~~~l~~~l~~~~~LlvlDdv~~~~~--~~~l-~~~l~~~~~~~~ilvttR~~~~-- 163 (658)
.+ +++.++.+.. +... .+.+.+.++..+.+|||||++.... +... +..+.....+..+|+||+....
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~ 178 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRD 178 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHh
Confidence 11 2222221211 1111 3445566666666999999977542 1222 2222221267888999987531
Q ss_pred --HHhh-cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC---CCcc-hhHHhhccc--c-c--c-
Q 047214 164 --LEKF-RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYAD---GNPL-VPKVLGSSL--C-L--K- 230 (658)
Q Consensus 164 --~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Pl-ai~~~a~~l--~-~--~- 230 (658)
.... ......+.+.+++.++..+++..++..........++..+.+++.++ |.|. ++..+..+. . + .
T Consensus 179 ~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i 258 (384)
T 2qby_B 179 YMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGII 258 (384)
T ss_dssp TSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCC
T ss_pred hhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCcc
Confidence 1111 12234899999999999999998753110011122335677888887 8886 333332221 1 1 1
Q ss_pred cHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeeecCCCCCHH-H---HHHHhcc------ccccchH
Q 047214 231 RKSHWENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIACFFEGEDKD-F---VARILDD------SESDGLD 300 (658)
Q Consensus 231 ~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp~~~~~~-~---l~~~~~~------~~~~~l~ 300 (658)
....+..++.... ...+..++..|++..+.++..++....+-+.. . +..-+.. ....++.
T Consensus 259 ~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~ 328 (384)
T 2qby_B 259 RKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIIS 328 (384)
T ss_dssp CHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 5566666655432 12345566788888888887777611101111 1 2222211 3456688
Q ss_pred HhhhccCceee
Q 047214 301 VLIDKSLISIS 311 (658)
Q Consensus 301 ~L~~~~ll~~~ 311 (658)
.|...++++..
T Consensus 329 ~L~~~gli~~~ 339 (384)
T 2qby_B 329 ELDMFGIVKIR 339 (384)
T ss_dssp HHHHTTSEEEE
T ss_pred HHHhCCCEEEE
Confidence 89999999864
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=4.9e-13 Score=137.84 Aligned_cols=140 Identities=19% Similarity=0.284 Sum_probs=98.4
Q ss_pred cEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC---CCCCccEEEecCCCcccccc-cc
Q 047214 389 RLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF---KPENLVELNLHFSKVEQLWE-GK 464 (658)
Q Consensus 389 ~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~---~l~~L~~L~L~~~~i~~l~~-~~ 464 (658)
++++++++.+ ..+|..+ +..+++|+|++|.++.++... .+.+|++|+|++|.+..++. .+
T Consensus 21 ~~l~c~~~~l-------------~~iP~~~---~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~ 84 (361)
T 2xot_A 21 NILSCSKQQL-------------PNVPQSL---PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF 84 (361)
T ss_dssp TEEECCSSCC-------------SSCCSSC---CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTT
T ss_pred CEEEeCCCCc-------------CccCccC---CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhc
Confidence 5777777776 3355543 336788888888888777653 67888888888888887765 47
Q ss_pred cCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccc-cccccCCCCCCEEeccCCCCCCcCCCCC-----CC
Q 047214 465 KEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACV-PSSIQNFKYLSALSFEGCKSLRSFPSNF-----RF 535 (658)
Q Consensus 465 ~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~~~~~-----~~ 535 (658)
..+++|++|++++|. +..++ +..+++|++|++++|.+..+ |..+..+++|+.|++++| .+..+|... .+
T Consensus 85 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 85 VPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKL 162 (361)
T ss_dssp TTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----C
T ss_pred cCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccC
Confidence 788888888888884 45554 77888888888888888776 456778888888888876 555555432 24
Q ss_pred CCCcEEeccCC
Q 047214 536 VCPVTINFSSC 546 (658)
Q Consensus 536 ~~L~~L~l~~~ 546 (658)
++|+.|++++|
T Consensus 163 ~~L~~L~L~~N 173 (361)
T 2xot_A 163 PKLMLLDLSSN 173 (361)
T ss_dssp TTCCEEECCSS
T ss_pred CcCCEEECCCC
Confidence 45555555443
No 122
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=1.5e-12 Score=123.91 Aligned_cols=142 Identities=19% Similarity=0.272 Sum_probs=110.9
Q ss_pred CcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCC-C-C-CCCCccEEEecCCCcccccc-c
Q 047214 388 LRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPS-N-F-KPENLVELNLHFSKVEQLWE-G 463 (658)
Q Consensus 388 L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~-~-~-~l~~L~~L~L~~~~i~~l~~-~ 463 (658)
-+.++++++.+ ..+|..+. ..+++|++++|.++.+++ . + .+.+|++|+|++|.++.++. .
T Consensus 13 ~~~l~~s~n~l-------------~~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~ 76 (220)
T 2v70_A 13 GTTVDCSNQKL-------------NKIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76 (220)
T ss_dssp TTEEECCSSCC-------------SSCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT
T ss_pred CCEeEeCCCCc-------------ccCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH
Confidence 35788888886 34565443 367899999999998743 3 3 88999999999999998876 5
Q ss_pred ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccc-cccccCCCCCCEEeccCCCCCCcC-CCCC-CCCC
Q 047214 464 KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACV-PSSIQNFKYLSALSFEGCKSLRSF-PSNF-RFVC 537 (658)
Q Consensus 464 ~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~-~~~~ 537 (658)
+..+++|++|++++|. +..++ +..+++|++|++++|.+..+ |..+..+++|++|++++| .++.+ |..+ .+++
T Consensus 77 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 154 (220)
T 2v70_A 77 FEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHS 154 (220)
T ss_dssp TTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTT
T ss_pred hCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCC
Confidence 8889999999999984 45554 88899999999999999887 567889999999999987 55555 4433 5777
Q ss_pred CcEEeccCCC
Q 047214 538 PVTINFSSCV 547 (658)
Q Consensus 538 L~~L~l~~~~ 547 (658)
|+.|++++|+
T Consensus 155 L~~L~L~~N~ 164 (220)
T 2v70_A 155 LSTLNLLANP 164 (220)
T ss_dssp CCEEECCSCC
T ss_pred CCEEEecCcC
Confidence 7777777764
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=9.9e-13 Score=135.57 Aligned_cols=164 Identities=19% Similarity=0.238 Sum_probs=129.7
Q ss_pred cceEEecccCCCCCCCCCCCCCccEEEecCCCccccccc-cc-CCCCccEEeccCCCcccccC---CCcCCCccEEEeec
Q 047214 425 LRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEG-KK-EAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDY 499 (658)
Q Consensus 425 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~-~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~ 499 (658)
-+.+++++++++.+|..+. ..++.|+|++|.++.++.. +. .+.+|++|++++| .+..++ +..+++|++|++++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~-~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP-SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC-TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC-CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCC
Confidence 4678999999999998763 4689999999999998876 44 8999999999999 455555 89999999999999
Q ss_pred CCcccccc-cccCCCCCCEEeccCCCCCCcCC-CCC-CCCCCcEEeccCCCCccccCc-------ccCCccEEEcccccc
Q 047214 500 TNFACVPS-SIQNFKYLSALSFEGCKSLRSFP-SNF-RFVCPVTINFSSCVNLIEFPQ-------ISGKITRLYLGQSAI 569 (658)
Q Consensus 500 ~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~~-~~~-~~~~L~~L~l~~~~~l~~~~~-------~~~~L~~L~l~~~~i 569 (658)
|.+..++. .+..+++|+.|++++| .+..++ ..+ ++++|+.|++++|. +..+|. .+++|+.|+|++|.+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 99988875 5889999999999998 455554 333 78899999998863 555553 246778888888888
Q ss_pred cccccc-ccCCCC--CCEEecCCCcc
Q 047214 570 EEVPSS-IECLTD--LEVLDLRDCKR 592 (658)
Q Consensus 570 ~~~~~~-~~~l~~--L~~L~l~~~~~ 592 (658)
..+|.. +..++. |+.|++++|+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CccCHHHhhhccHhhcceEEecCCCc
Confidence 877753 566665 37788888764
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.41 E-value=7.4e-13 Score=120.40 Aligned_cols=133 Identities=17% Similarity=0.047 Sum_probs=102.9
Q ss_pred CCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccc-cccc
Q 047214 385 MSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQ-LWEG 463 (658)
Q Consensus 385 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~-l~~~ 463 (658)
.++|+.|++++|.+. ...+|..+..++ +|++|++++|.++.++....+++|++|++++|.+.. +|..
T Consensus 23 ~~~L~~L~l~~n~l~-----------~~~i~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 23 PAAVRELVLDNCKSN-----------DGKIEGLTAEFV-NLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp TTSCSEEECCSCBCB-----------TTBCSSCCGGGG-GCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred cccCCEEECCCCCCC-----------hhhHHHHHHhCC-CCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHH
Confidence 478899999999872 025777778887 899999999998888433488899999999998887 6665
Q ss_pred ccCCCCccEEeccCCCccccc---C-CCcCCCccEEEeecCCcccccc----cccCCCCCCEEeccCCCCCCcCCC
Q 047214 464 KKEAFKLKSINLSHCRHFIDM---S-YPSAPNLETYLLDYTNFACVPS----SIQNFKYLSALSFEGCKSLRSFPS 531 (658)
Q Consensus 464 ~~~l~~L~~L~l~~~~~~~~~---~-l~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~~~l~~~~~ 531 (658)
+..+++|++|++++|. +..+ + +..+++|++|++++|.+..+|. .+..+++|++|++++| ....+|.
T Consensus 91 ~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp HHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred HhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 6678889999998884 4443 3 7788888888888888888776 6788888888888887 4444443
No 125
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.41 E-value=1.6e-14 Score=159.98 Aligned_cols=264 Identities=15% Similarity=0.069 Sum_probs=139.9
Q ss_pred hcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-----C-CCCCccEEEecCC
Q 047214 382 FTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-----F-KPENLVELNLHFS 455 (658)
Q Consensus 382 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-----~-~l~~L~~L~L~~~ 455 (658)
+.++++|++|++++|.+.+... ..++.....++ +|++|++++|. ..++.. . .+++|++|++++|
T Consensus 152 ~~~~~~L~~L~L~~~~i~~~~~--------~~l~~~~~~~~-~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 152 AATCRNLKELDLRESDVDDVSG--------HWLSHFPDTYT-SLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHCTTCCEEECTTCEEECCCG--------GGGGGSCTTCC-CCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHhCCCCCEEeCcCCccCCcch--------HHHHHHhhcCC-cCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 3456677777777666532110 11222223344 67777776665 222211 1 3567777777766
Q ss_pred -CcccccccccCCCCccEEeccCCCc-------------------c-----------cccC--CCcCCCccEEEeecCCc
Q 047214 456 -KVEQLWEGKKEAFKLKSINLSHCRH-------------------F-----------IDMS--YPSAPNLETYLLDYTNF 502 (658)
Q Consensus 456 -~i~~l~~~~~~l~~L~~L~l~~~~~-------------------~-----------~~~~--l~~l~~L~~L~l~~~~~ 502 (658)
.+..++..+..+++|+.|++.+|.. + ..++ +..+++|++|+++++.+
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred CcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 4444555555666666665443310 0 0111 12455666666666554
Q ss_pred cc--ccccccCCCCCCEEeccCCCCCCcCCCCC-CCCCCcEEeccC--------CCCccc-----cCcccCCccEEEccc
Q 047214 503 AC--VPSSIQNFKYLSALSFEGCKSLRSFPSNF-RFVCPVTINFSS--------CVNLIE-----FPQISGKITRLYLGQ 566 (658)
Q Consensus 503 ~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~--------~~~l~~-----~~~~~~~L~~L~l~~ 566 (658)
.. ++..+..+++|++|++.+|..-..++... .+++|+.|++.+ |..++. +...+++|+.|.+.+
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 32 22224456666666666551101111111 356677777733 222221 112356777777777
Q ss_pred ccccccc-ccc-cCCCCCCEEecC-----CCccch------hhhhhhcCCCCCcEEeccCCcCCccC-----C-CCCCcc
Q 047214 567 SAIEEVP-SSI-ECLTDLEVLDLR-----DCKRLK------RISTRFCKLRSLVDLFLHGCLNLQSL-----P-ALPLCL 627 (658)
Q Consensus 567 ~~i~~~~-~~~-~~l~~L~~L~l~-----~~~~~~------~~~~~~~~l~~L~~L~l~~~~~l~~l-----~-~l~~~L 627 (658)
+.++... ..+ ..+++|+.|+++ +|..+. .++..+.++++|+.|++++ .+... . .+++ |
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~-L 458 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKK-M 458 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTT-C
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchh-c
Confidence 7666322 122 357888888888 344443 2333356778888888866 23221 1 2677 9
Q ss_pred cEEeccCCccccccC----CCCCCccEEeccCCCC
Q 047214 628 KSLDLRDCKMLQSLP----ELPSCLEALDLTSCNM 658 (658)
Q Consensus 628 ~~L~l~~~~~l~~i~----~~~~~L~~L~l~~~~~ 658 (658)
++|++++|......+ ..+++|+.|+|++|++
T Consensus 459 ~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 459 EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 999999887322111 2467899999999874
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=2.6e-15 Score=163.45 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=20.4
Q ss_pred ccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCC
Q 047214 492 LETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPS 531 (658)
Q Consensus 492 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 531 (658)
|+.|++++|.+..+|. ++.+++|+.|++++| .++.+|.
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~ 480 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPP 480 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSS-CCCCCCG
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcc-cccccch
Confidence 5555555555555554 555555555555554 3344443
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=6.6e-15 Score=160.22 Aligned_cols=169 Identities=16% Similarity=0.133 Sum_probs=94.2
Q ss_pred CCCCccEEEecCCCcccccccccCCCCccEEeccCCC-------------cccccC--CCcCCCccEEE-eecCCccccc
Q 047214 443 KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCR-------------HFIDMS--YPSAPNLETYL-LDYTNFACVP 506 (658)
Q Consensus 443 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~-------------~~~~~~--l~~l~~L~~L~-l~~~~~~~~~ 506 (658)
.+++|+.|+|++|.++.+|..++.+++|+.|++++|. .....| ++.+++|+.|+ ++.|.+..++
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 4678888889988888888888888888888886663 222333 66777777777 4444332222
Q ss_pred c------cccC--CCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCccccCcc---cCCccEEEcccccccccccc
Q 047214 507 S------SIQN--FKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEFPQI---SGKITRLYLGQSAIEEVPSS 575 (658)
Q Consensus 507 ~------~~~~--l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~~~i~~~~~~ 575 (658)
. .+.. ...|+.|++++| .++.+|....+++|+.|++++|. +..+|.. +++|+.|+|++|.++.+| .
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~ 503 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALENVD-G 503 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCCGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCCCG-G
T ss_pred hhhhhcccccccCccCceEEEecCC-CCCCCcCccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCCCCCc-c
Confidence 1 0111 124778888876 56666664456666666666542 3344432 233444444444444444 3
Q ss_pred ccCCCCCCEEecCCCccchhh-hhhhcCCCCCcEEeccCC
Q 047214 576 IECLTDLEVLDLRDCKRLKRI-STRFCKLRSLVDLFLHGC 614 (658)
Q Consensus 576 ~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~ 614 (658)
++.+++|+.|++++|...... |..++.+++|+.|++++|
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS
T ss_pred cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC
Confidence 444444444444444422221 444444444444444443
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.35 E-value=3e-13 Score=151.94 Aligned_cols=108 Identities=20% Similarity=0.193 Sum_probs=64.2
Q ss_pred CCCCCCcccccceEEecccCCCCCCCCC-CCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC--CCcCCC
Q 047214 415 PDGLDYLPKNLRYLHWDKYPLRTLPSNF-KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPN 491 (658)
Q Consensus 415 p~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~ 491 (658)
|..+..++ .|+.|+|++|.+..+|..+ .+.+|++|+|++|.++.+|..+..+++|++|+|++|. +..+| ++.+++
T Consensus 217 ~~~~~~l~-~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQ-LWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCC-CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred hhhhccCC-CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence 44455555 6666666666666666544 5666666666666666666666666666666666663 34555 666666
Q ss_pred ccEEEeecCCcccccccccCCCCCCEEeccCCC
Q 047214 492 LETYLLDYTNFACVPSSIQNFKYLSALSFEGCK 524 (658)
Q Consensus 492 L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~ 524 (658)
|++|++++|.+..+|..++.+++|++|+|++|.
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC
T ss_pred CCEEECCCCCCCccChhhhcCCCccEEeCCCCc
Confidence 666666666666666566666666666666653
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.35 E-value=1.2e-12 Score=116.34 Aligned_cols=124 Identities=19% Similarity=0.107 Sum_probs=81.7
Q ss_pred CCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccc-cccc
Q 047214 385 MSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQ-LWEG 463 (658)
Q Consensus 385 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~-l~~~ 463 (658)
.++|+.|++++|.+. ...+|..+..++ +|++|++++|.++.++....+++|++|++++|.+.. +|..
T Consensus 16 ~~~l~~L~l~~n~l~-----------~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 83 (149)
T 2je0_A 16 PSDVKELVLDNSRSN-----------EGKLEGLTDEFE-ELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVL 83 (149)
T ss_dssp GGGCSEEECTTCBCB-----------TTBCCSCCTTCT-TCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHH
T ss_pred CccCeEEEccCCcCC-----------hhHHHHHHhhcC-CCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHH
Confidence 356777777777762 024666666666 777777777777766333367777777777777776 5555
Q ss_pred ccCCCCccEEeccCCCccccc---C-CCcCCCccEEEeecCCcccccc----cccCCCCCCEEecc
Q 047214 464 KKEAFKLKSINLSHCRHFIDM---S-YPSAPNLETYLLDYTNFACVPS----SIQNFKYLSALSFE 521 (658)
Q Consensus 464 ~~~l~~L~~L~l~~~~~~~~~---~-l~~l~~L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~ 521 (658)
+..+++|++|++++|. +..+ + ++.+++|++|++++|.+..+|. .+..+++|+.|+++
T Consensus 84 ~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 84 AEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred hhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5667777777777774 3333 2 6667777777777776666654 46666777776654
No 130
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.35 E-value=4.4e-12 Score=132.16 Aligned_cols=273 Identities=15% Similarity=0.117 Sum_probs=153.9
Q ss_pred CCCCcccccchHhhHHHHhccc-CCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc---CceEEEeccccccccchhhHh
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF---EGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~-~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f---~~~~~~~~~~~~~~~~~~~~l 101 (658)
.+..|+||+.+++.+.+++... .+...+.+.|+|++|+||||||+.+++.....+ ...+|+. ........ ..+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~-~~~~~~~~--~~~ 94 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN-TRQIDTPY--RVL 94 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE-HHHHCSHH--HHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE-CCCCCCHH--HHH
Confidence 3478999999999999988742 114567899999999999999999999865543 2345555 22211111 222
Q ss_pred HHHhhhcCC-------CC---chhHHHHhc--CcceEEEEeCCCCch------hhhhhhcccCC-CCCCCEEEEEecchH
Q 047214 102 SEKLEVAGA-------NI---PHFTKERVR--RMKVLIVLDDVNEVG------QLEGLIGELDQ-FGPGSRIVVTTRDKR 162 (658)
Q Consensus 102 ~~~l~~~~~-------~~---~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~l~~~l~~-~~~~~~ilvttR~~~ 162 (658)
..++...+. .. .+.+.+.+. +++.+||+|+++... .+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 222111110 01 233344444 348999999996643 23344333311 134567788887664
Q ss_pred HHHhh----cC--CCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC---CCcchhHHhhc-ccc----
Q 047214 163 VLEKF----RG--EKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYAD---GNPLVPKVLGS-SLC---- 228 (658)
Q Consensus 163 ~~~~~----~~--~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plai~~~a~-~l~---- 228 (658)
....+ .. ....+.+.+++.++..+++...+..........++..+.+++.++ |.|..+..+.. +..
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAER 254 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 22211 01 125899999999999999987643111111222445677777777 99984433322 211
Q ss_pred -c--c-cHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeeecCC----CCCHHH-------HHHHhcc
Q 047214 229 -L--K-RKSHWENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIACFFE----GEDKDF-------VARILDD 293 (658)
Q Consensus 229 -~--~-~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp~----~~~~~~-------l~~~~~~ 293 (658)
+ . +...+..+..... ...+.-.+..+++..+.++..++.+.+ .+.... +..-+..
T Consensus 255 ~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~ 324 (386)
T 2qby_A 255 MKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV 324 (386)
T ss_dssp TTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC
T ss_pred cCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC
Confidence 1 1 3344444443321 223445567788888888777764321 122322 2221211
Q ss_pred ------ccccchHHhhhccCceee
Q 047214 294 ------SESDGLDVLIDKSLISIS 311 (658)
Q Consensus 294 ------~~~~~l~~L~~~~ll~~~ 311 (658)
....+++.|...|+++..
T Consensus 325 ~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 325 EAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 345678889999999764
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2.4e-12 Score=116.98 Aligned_cols=122 Identities=17% Similarity=0.143 Sum_probs=96.4
Q ss_pred cccceEEecccCCC--CCCCCC-CCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEe
Q 047214 423 KNLRYLHWDKYPLR--TLPSNF-KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLL 497 (658)
Q Consensus 423 ~~L~~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l 497 (658)
++|++|++++|.+. .+|..+ .+++|++|++++|.+..+ ..+..+++|++|++++|.....+| +..+++|++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 38999999999988 888876 888999999999998887 678888999999999885444366 666899999999
Q ss_pred ecCCccccc--ccccCCCCCCEEeccCCCCCCcCCC-----CCCCCCCcEEeccCC
Q 047214 498 DYTNFACVP--SSIQNFKYLSALSFEGCKSLRSFPS-----NFRFVCPVTINFSSC 546 (658)
Q Consensus 498 ~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~~ 546 (658)
++|.+..+| ..+..+++|++|++++| .+..++. ...+++|+.|++++|
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 998888876 57888889999999887 4555554 225666666666665
No 132
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.33 E-value=8.9e-12 Score=129.86 Aligned_cols=275 Identities=12% Similarity=0.079 Sum_probs=152.2
Q ss_pred CCCcccccchHhhHHHHhccc-CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc------cCceEEEeccccccccchhh
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE------FEGRCFLSDIRKNSETGGGK 99 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~-~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~~ 99 (658)
+..|+||+.+++++.+++... .....+.+.|+|++|+|||++|+++++..... -...+++.+.........+.
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 478999999999999998643 11456789999999999999999999986432 12344454222111111112
Q ss_pred HhHHHhhhcCCC----C---chhHHHHhc--CcceEEEEeCCCCchhh----hhh---hcccCCC--CCCCEEEEEecch
Q 047214 100 ILSEKLEVAGAN----I---PHFTKERVR--RMKVLIVLDDVNEVGQL----EGL---IGELDQF--GPGSRIVVTTRDK 161 (658)
Q Consensus 100 ~l~~~l~~~~~~----~---~~~l~~~l~--~~~~LlvlDdv~~~~~~----~~l---~~~l~~~--~~~~~ilvttR~~ 161 (658)
.+...++..... . .+.+.+.+. +++.+||||+++..... +.+ ....... ..+..+|+||+..
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 222222221100 1 233444443 45789999999875421 222 2222111 3456788888765
Q ss_pred HH----HHhhcCCC--ceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcC---CCcchh-HHhhcccc---
Q 047214 162 RV----LEKFRGEK--KIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYAD---GNPLVP-KVLGSSLC--- 228 (658)
Q Consensus 162 ~~----~~~~~~~~--~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plai-~~~a~~l~--- 228 (658)
.. ........ ..+.+.+++.++..+++...+..........++..+.+++.++ |.|-.+ ..+..+..
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 21 11111222 5789999999999999988753200011111234677888887 999433 32222211
Q ss_pred --c--c-cHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeeecCCC---CCHHHHHH----Hhcc---
Q 047214 229 --L--K-RKSHWENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIACFFEG---EDKDFVAR----ILDD--- 293 (658)
Q Consensus 229 --~--~-~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp~~---~~~~~l~~----~~~~--- 293 (658)
+ . ....+..++.... ...+.-++..++++.+..+..++....+ +....+.. ....
T Consensus 258 ~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (387)
T 2v1u_A 258 RRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGL 327 (387)
T ss_dssp HTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTC
T ss_pred HcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCC
Confidence 1 1 4455555554432 1234445678888888877766633222 23332211 1111
Q ss_pred ------ccccchHHhhhccCceee
Q 047214 294 ------SESDGLDVLIDKSLISIS 311 (658)
Q Consensus 294 ------~~~~~l~~L~~~~ll~~~ 311 (658)
....+++.|...|+++..
T Consensus 328 ~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 328 EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 345668888889988764
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.32 E-value=4.5e-12 Score=122.97 Aligned_cols=197 Identities=14% Similarity=0.124 Sum_probs=120.4
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh--hH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG--KI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~--~~ 100 (658)
.|..-..++||+.+++.+..++... ...+.+.|+|++|+||||+|+++++.....+....+. .........+ ..
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 93 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP--CGVCDNCREIEQGR 93 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHT--CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC--CSCSHHHHHHHTTC
T ss_pred CCccHHHHhCcHHHHHHHHHHHHcC--CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--CcccHHHHHHhccC
Confidence 3445567999999999999999763 2345889999999999999999998854322110000 0000000000 00
Q ss_pred hHHHhhhcCCC--Cch---hHHHH-----hcCcceEEEEeCCCCc--hhhhhhhcccCCCCCCCEEEEEecchH-HHHhh
Q 047214 101 LSEKLEVAGAN--IPH---FTKER-----VRRMKVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDKR-VLEKF 167 (658)
Q Consensus 101 l~~~l~~~~~~--~~~---~l~~~-----l~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~ 167 (658)
....+...... ... .+.+. ..+++.+||+||++.. ..++.++..+.....+..+|+||+... +....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 94 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp CSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHH
T ss_pred CcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHH
Confidence 00000000000 011 11111 1345799999999764 356666666654456778888887653 22222
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhc
Q 047214 168 RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGS 225 (658)
Q Consensus 168 ~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~ 225 (658)
......+.+.+++.++..+++...+...... ..++.++.|++.|+|+|..+..+..
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2446789999999999999998876433221 2234678999999999988776654
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.31 E-value=3.2e-12 Score=113.64 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=102.8
Q ss_pred cccceEEecccCCC--CCCCCC-CCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC--CCcCCCccEEEe
Q 047214 423 KNLRYLHWDKYPLR--TLPSNF-KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLL 497 (658)
Q Consensus 423 ~~L~~L~l~~~~l~--~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l 497 (658)
++++.|++++|.+. .+|..+ .+++|++|++++|.+..+ ..+..+++|++|++++|.....+| ++.+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 48999999999998 888876 899999999999999988 778899999999999995444477 677999999999
Q ss_pred ecCCccccc--ccccCCCCCCEEeccCCCCCCcCCC-----CCCCCCCcEEeccC
Q 047214 498 DYTNFACVP--SSIQNFKYLSALSFEGCKSLRSFPS-----NFRFVCPVTINFSS 545 (658)
Q Consensus 498 ~~~~~~~~~--~~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~~~L~~L~l~~ 545 (658)
++|.+..++ ..+..+++|++|++++| .++.++. ...+++|+.|++++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 999998865 77899999999999998 5677666 23688888887753
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=2.7e-12 Score=117.66 Aligned_cols=127 Identities=15% Similarity=0.164 Sum_probs=68.0
Q ss_pred hcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCCCccEEEecCCCccccc
Q 047214 382 FTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLW 461 (658)
Q Consensus 382 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~ 461 (658)
+..+.+|+.|++++|.+. .+|. +..+.++|++|++++|.++.++....+.+|++|++++|.+..+|
T Consensus 15 ~~~~~~L~~L~l~~n~l~-------------~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~ 80 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-------------VIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG 80 (176)
T ss_dssp EECTTSCEEEECTTSCCC-------------SCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC
T ss_pred cCCcCCceEEEeeCCCCc-------------hhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC
Confidence 345566666666666652 2332 22322256666666666665533335666666666666666555
Q ss_pred ccc-cCCCCccEEeccCCCcccccC----CCcCCCccEEEeecCCccccccc----ccCCCCCCEEeccCC
Q 047214 462 EGK-KEAFKLKSINLSHCRHFIDMS----YPSAPNLETYLLDYTNFACVPSS----IQNFKYLSALSFEGC 523 (658)
Q Consensus 462 ~~~-~~l~~L~~L~l~~~~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~~----~~~l~~L~~L~l~~~ 523 (658)
..+ ..+++|++|++++|. +..+| +..+++|+.|++++|.+..+|.. +..+++|+.|++++|
T Consensus 81 ~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 81 EGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp SCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred cchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 443 555566666666553 23322 44555555555555555555442 455555555555544
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=1.1e-12 Score=147.18 Aligned_cols=116 Identities=17% Similarity=0.286 Sum_probs=54.2
Q ss_pred ccccCCCCccEEeccCCCcccccC--CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCC-CCCCC
Q 047214 462 EGKKEAFKLKSINLSHCRHFIDMS--YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNF-RFVCP 538 (658)
Q Consensus 462 ~~~~~l~~L~~L~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L 538 (658)
..+..+.+|+.|+|++|. +..+| +..+++|++|++++|.+..+|..++.+++|++|+|++| .++.+|..+ +++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~-- 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF-- 293 (727)
T ss_dssp ----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT--
T ss_pred hhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC--
Confidence 334444444444444442 22333 33444555555555555555544555555555555544 233333321 222
Q ss_pred cEEeccCCCCccccCcccCCccEEEccccccccccccccCCCCCCEEecCCCccchhhhhhh
Q 047214 539 VTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPSSIECLTDLEVLDLRDCKRLKRISTRF 600 (658)
Q Consensus 539 ~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 600 (658)
+|+.|+|++|.++.+|..+..+++|++|+|++|+....+|..+
T Consensus 294 -------------------~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 294 -------------------QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp -------------------TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred -------------------CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 3333344444444555556666666666666666554555444
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=3.3e-12 Score=117.01 Aligned_cols=125 Identities=12% Similarity=0.177 Sum_probs=98.1
Q ss_pred CCCcccccceEEecccCCCCCCCCCCCC-CccEEEecCCCcccccccccCCCCccEEeccCCCcccccC---CCcCCCcc
Q 047214 418 LDYLPKNLRYLHWDKYPLRTLPSNFKPE-NLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLE 493 (658)
Q Consensus 418 ~~~l~~~L~~L~l~~~~l~~lp~~~~l~-~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~ 493 (658)
+.+.+ +|+.|++++|.++.+|....+. +|++|++++|.++.+ ..+..+++|++|++++|. +..+| ++.+++|+
T Consensus 15 ~~~~~-~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAV-RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTT-SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred cCCcC-CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 33444 8999999999999887655544 999999999999887 678889999999999984 55565 58889999
Q ss_pred EEEeecCCcccccc--cccCCCCCCEEeccCCCCCCcCCCC-----CCCCCCcEEeccCC
Q 047214 494 TYLLDYTNFACVPS--SIQNFKYLSALSFEGCKSLRSFPSN-----FRFVCPVTINFSSC 546 (658)
Q Consensus 494 ~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~~~~-----~~~~~L~~L~l~~~ 546 (658)
+|++++|.+..+|. .+..+++|++|++++| .+..+|.. ..+++|+.|++++|
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 99999999888876 7888899999999987 45566652 25666666666654
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=3.3e-11 Score=111.98 Aligned_cols=118 Identities=21% Similarity=0.376 Sum_probs=67.6
Q ss_pred ceEEecccCCCCCCCCCCCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCc
Q 047214 426 RYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNF 502 (658)
Q Consensus 426 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~ 502 (658)
+++++++++++.+|..+. .+|++|++++|.++.+|..+..+.+|++|++++|. +..++ |.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~-~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP-RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC-CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCcc
Confidence 345555555555555442 45666666666666666556666666666666663 33333 56666666666666666
Q ss_pred ccccc-cccCCCCCCEEeccCCCCCCcCCCC-C-CCCCCcEEeccCC
Q 047214 503 ACVPS-SIQNFKYLSALSFEGCKSLRSFPSN-F-RFVCPVTINFSSC 546 (658)
Q Consensus 503 ~~~~~-~~~~l~~L~~L~l~~~~~l~~~~~~-~-~~~~L~~L~l~~~ 546 (658)
..+++ .+..+++|++|++++| .++.++.. + .+++|+.|++++|
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence 66543 4666666666666665 44455442 2 4555555555554
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.28 E-value=1.8e-11 Score=113.70 Aligned_cols=119 Identities=18% Similarity=0.280 Sum_probs=100.4
Q ss_pred cEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC-CCCCccEEEecCCCccccccc-ccC
Q 047214 389 RLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF-KPENLVELNLHFSKVEQLWEG-KKE 466 (658)
Q Consensus 389 ~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~-~~~ 466 (658)
++++++++.+ ..+|..+. .++++|++++|.++.+|..+ .+.+|++|+|++|.++.++.. +..
T Consensus 13 ~~l~~~~~~l-------------~~ip~~~~---~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKGL-------------KVLPKGIP---RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76 (193)
T ss_dssp TEEECTTSCC-------------SSCCSCCC---TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CEEEcCCCCC-------------CcCCCCCC---CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccC
Confidence 5788888886 34665543 48999999999999999766 899999999999999988754 889
Q ss_pred CCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccccc-cccCCCCCCEEeccCCC
Q 047214 467 AFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPS-SIQNFKYLSALSFEGCK 524 (658)
Q Consensus 467 l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 524 (658)
+++|++|++++|. +..++ +..+++|++|++++|.+..+|. .+..+++|+.|++++|+
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 9999999999994 55555 8899999999999999999886 47889999999999884
No 140
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.26 E-value=4.3e-11 Score=124.78 Aligned_cols=275 Identities=12% Similarity=0.073 Sum_probs=155.4
Q ss_pred CCCcccccchHhhHHHHhccc---CCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc-CceEEEeccccccccchhhHhH
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF-EGRCFLSDIRKNSETGGGKILS 102 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~---~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~ 102 (658)
+..++||+.+++++.+++... ..+..+.+.|+|++|+||||+|+.+++...... ..++++.+.........+..+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHH
Confidence 367999999999999998752 112234899999999999999999999876542 3345554222111111112222
Q ss_pred HHhhhcCC----CC---chhHHHHhc--CcceEEEEeCCCCch--hhhhhhcccCCCC----CCCEEEEEecchHHHHhh
Q 047214 103 EKLEVAGA----NI---PHFTKERVR--RMKVLIVLDDVNEVG--QLEGLIGELDQFG----PGSRIVVTTRDKRVLEKF 167 (658)
Q Consensus 103 ~~l~~~~~----~~---~~~l~~~l~--~~~~LlvlDdv~~~~--~~~~l~~~l~~~~----~~~~ilvttR~~~~~~~~ 167 (658)
..++.... .. .+.+.+.+. +++.+||||+++... ....+...+.... .+..+|++|+........
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 22221111 11 223333333 457899999997753 3444444432211 467788888876432222
Q ss_pred c----C--CCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHc---------CCCcchhHHhhcccc----
Q 047214 168 R----G--EKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYA---------DGNPLVPKVLGSSLC---- 228 (658)
Q Consensus 168 ~----~--~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plai~~~a~~l~---- 228 (658)
. . ....+.+.+++.++..+++...+........-.++..+.+++.+ .|.|..+..+.....
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 0 0 12379999999999999998875321111122345678899999 788754443332211
Q ss_pred --cc---cHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeeecC---C--CCCHHHHHHHhcc-----
Q 047214 229 --LK---RKSHWENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIACFF---E--GEDKDFVARILDD----- 293 (658)
Q Consensus 229 --~~---~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp---~--~~~~~~l~~~~~~----- 293 (658)
+. .......+..... ...+.-.+..|+.+.+.++..++.+. . .+....+......
T Consensus 256 ~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 325 (389)
T 1fnn_A 256 QNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEY 325 (389)
T ss_dssp HTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHT
T ss_pred HhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHc
Confidence 11 2222222222211 11223335667888888887777553 2 2333333221111
Q ss_pred --------ccccchHHhhhccCceee
Q 047214 294 --------SESDGLDVLIDKSLISIS 311 (658)
Q Consensus 294 --------~~~~~l~~L~~~~ll~~~ 311 (658)
....+++.|...++|...
T Consensus 326 ~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 326 GERPRVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred CCCCCCHHHHHHHHHHHHhCCCeEEe
Confidence 334678899999999874
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.26 E-value=2.2e-11 Score=116.19 Aligned_cols=181 Identities=14% Similarity=0.172 Sum_probs=116.8
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc-cCc-eEEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-FEG-RCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~ 100 (658)
+|..-..++||+..++.+.+++... ..+.+.|+|++|+|||++|+.+++..... +.. .+.+. ...... ...
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~-~~~~~~---~~~ 84 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERK---NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERG---IDV 84 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTT---CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE-TTCTTC---HHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCC---CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec-cccccC---hHH
Confidence 4555678999999999999999763 33348999999999999999999985332 222 22222 111111 111
Q ss_pred hHHHhhhcCCCCchhHHHHh------cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecchH-HHHhhcCCC
Q 047214 101 LSEKLEVAGANIPHFTKERV------RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDKR-VLEKFRGEK 171 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l------~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~~~~~ 171 (658)
+.+. +.... ..++.+||+||++... ..+.+...+.....+.++|+||+... .........
T Consensus 85 ~~~~-----------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 85 VRHK-----------IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHH-----------HHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHH-----------HHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 1111 11111 2568899999997753 34555555444456778888887653 222222445
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHh
Q 047214 172 KIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 172 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
..+.+.+++.++..+++.+.+...... ..++..+.+++.++|+|..+..+
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 589999999999999998876432221 22346788999999999865443
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=2.8e-11 Score=112.47 Aligned_cols=99 Identities=20% Similarity=0.345 Sum_probs=55.4
Q ss_pred ccceEEecccCCCCCCCC--C-CCCCccEEEecCCCcccc-cccccCCCCccEEeccCCCcccccC---CCcCCCccEEE
Q 047214 424 NLRYLHWDKYPLRTLPSN--F-KPENLVELNLHFSKVEQL-WEGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYL 496 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~--~-~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~ 496 (658)
++++|++++|.+..+|.. + .+++|++|+|++|.++.+ |..+..+++|++|++++|. +..++ +..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEE
Confidence 566666666666655542 2 566666666666666554 3445556666666666653 23332 55555666666
Q ss_pred eecCCcccc-cccccCCCCCCEEeccCC
Q 047214 497 LDYTNFACV-PSSIQNFKYLSALSFEGC 523 (658)
Q Consensus 497 l~~~~~~~~-~~~~~~l~~L~~L~l~~~ 523 (658)
+++|.+..+ |..+..+++|++|++++|
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 665555544 344555555555555555
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=8e-11 Score=109.36 Aligned_cols=120 Identities=13% Similarity=0.208 Sum_probs=98.6
Q ss_pred cceEEecccCCCCCCCCCCCCCccEEEecCCCccccccc--ccCCCCccEEeccCCCccccc-C--CCcCCCccEEEeec
Q 047214 425 LRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEG--KKEAFKLKSINLSHCRHFIDM-S--YPSAPNLETYLLDY 499 (658)
Q Consensus 425 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~--~~~l~~L~~L~l~~~~~~~~~-~--l~~l~~L~~L~l~~ 499 (658)
-+++++++++++.+|..+. .+|++|++++|.+..++.. +..+++|++|++++|. +..+ | +.++++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCC
Confidence 4688999999999998763 3899999999999988864 8899999999999995 4444 5 89999999999999
Q ss_pred CCcccccc-cccCCCCCCEEeccCCCCCCcC-CCCC-CCCCCcEEeccCCC
Q 047214 500 TNFACVPS-SIQNFKYLSALSFEGCKSLRSF-PSNF-RFVCPVTINFSSCV 547 (658)
Q Consensus 500 ~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~-~~~~-~~~~L~~L~l~~~~ 547 (658)
|.+..++. .+..+++|++|++++|. ++.+ |..+ .+++|+.|++++|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence 99988765 48899999999999984 4444 4433 67788888877764
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=2.3e-10 Score=104.75 Aligned_cols=99 Identities=19% Similarity=0.322 Sum_probs=54.0
Q ss_pred ccceEEecccCCCCCCCCC--CCCCccEEEecCCCccccccc-ccCCCCccEEeccCCCcccccC---CCcCCCccEEEe
Q 047214 424 NLRYLHWDKYPLRTLPSNF--KPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLL 497 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l 497 (658)
+|++|++++|+++.+|... .+.+|++|++++|.++.+|.. +..+++|+.|++++|. +..+| +..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEEC
Confidence 6666666666666555532 556666666666666655543 3555555666555552 33333 445555555555
Q ss_pred ecCCccccccc-ccCCCCCCEEeccCC
Q 047214 498 DYTNFACVPSS-IQNFKYLSALSFEGC 523 (658)
Q Consensus 498 ~~~~~~~~~~~-~~~l~~L~~L~l~~~ 523 (658)
++|.+..+|.. +..+++|++|++++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCC
Confidence 55555555433 344555555555554
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=4.3e-10 Score=102.91 Aligned_cols=121 Identities=17% Similarity=0.292 Sum_probs=99.4
Q ss_pred ccceEEecccCCCCCCCCCCCCCccEEEecCCCccccccc-ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeec
Q 047214 424 NLRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDY 499 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~ 499 (658)
..+.+++++++++.+|.... .+|+.|++++|.+..+|.. +..+++|++|++++| .+..+| ++.+++|++|++++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCCC-CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 45678888999999886553 7899999999999988765 688999999999999 455666 78999999999999
Q ss_pred CCccccccc-ccCCCCCCEEeccCCCCCCcCCCCC--CCCCCcEEeccCCC
Q 047214 500 TNFACVPSS-IQNFKYLSALSFEGCKSLRSFPSNF--RFVCPVTINFSSCV 547 (658)
Q Consensus 500 ~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~ 547 (658)
|.+..+|.. +..+++|++|++++| .++.+|... .+++|+.|++++|+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 999888764 688999999999988 666777632 57788888887764
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=1e-10 Score=118.72 Aligned_cols=244 Identities=12% Similarity=0.054 Sum_probs=142.2
Q ss_pred CCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC--C--------CCCccEEEecC
Q 047214 385 MSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF--K--------PENLVELNLHF 454 (658)
Q Consensus 385 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~--~--------l~~L~~L~L~~ 454 (658)
+++|++|++++|.+.... .+ -+.++ .++++.+..+ .+|... + |.+|+.|+|..
T Consensus 48 l~~L~~LdLs~n~i~~~~-----------~~--~~~~~-~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~ 110 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYS-----------GK--AGTYP-NGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE 110 (329)
T ss_dssp CTTCCEEEEEEEEECCEE-----------ES--SSSSG-GGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT
T ss_pred hccCeEEecCcceeEEec-----------Cc--ccccc-cccccccccc---ccCHHHhcccccccccccCCCcEEECCc
Confidence 788999999999874111 11 12222 2344444333 344433 5 67777777776
Q ss_pred CCccccccc-ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecC----Cccccc-ccccCCCCCC-EEeccCCC
Q 047214 455 SKVEQLWEG-KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYT----NFACVP-SSIQNFKYLS-ALSFEGCK 524 (658)
Q Consensus 455 ~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~----~~~~~~-~~~~~l~~L~-~L~l~~~~ 524 (658)
.++.++.. +..+.+|+.+++.+|. +..++ |.++.++..+....+ ....+. ..+..+.+|+ .+.+....
T Consensus 111 -~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~ 188 (329)
T 3sb4_A 111 -KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG 188 (329)
T ss_dssp -TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC
T ss_pred -cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC
Confidence 66666554 6667777777777663 23333 555555554443321 111111 2244444554 33333221
Q ss_pred CCCcC--CCCCCCCCCcEEeccCCCCc---cccCcccCCccEEEcccccccccccc-ccCCCCCCEEecCCCccchhhh-
Q 047214 525 SLRSF--PSNFRFVCPVTINFSSCVNL---IEFPQISGKITRLYLGQSAIEEVPSS-IECLTDLEVLDLRDCKRLKRIS- 597 (658)
Q Consensus 525 ~l~~~--~~~~~~~~L~~L~l~~~~~l---~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~- 597 (658)
.+... .......++..+.+.+.-.. ..+...+++|+.+++..|.+..+|.. |.++++|+.|++.++ +..++
T Consensus 189 ~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~ 266 (329)
T 3sb4_A 189 KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ 266 (329)
T ss_dssp CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECT
T ss_pred cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehH
Confidence 11110 00113445555555442111 11112367899999999999999886 889999999999986 44444
Q ss_pred hhhcCCCCCc-EEeccCCcCCccCC-----CCCCcccEEeccCCccccccCC----CCCCccEEec
Q 047214 598 TRFCKLRSLV-DLFLHGCLNLQSLP-----ALPLCLKSLDLRDCKMLQSLPE----LPSCLEALDL 653 (658)
Q Consensus 598 ~~~~~l~~L~-~L~l~~~~~l~~l~-----~l~~~L~~L~l~~~~~l~~i~~----~~~~L~~L~l 653 (658)
..|.++++|+ .+.+.+ .++.++ ++++ |+.+++.++. ++.++. ..++|+.++.
T Consensus 267 ~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~-L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 267 RVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN-LRYVLATGDK-ITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT-EEEEEECSSC-CCEECTTTTCTTCCCCEEEC
T ss_pred HHhhCChhccEEEEEcc--cceEEchhhhhCCcc-CCEEEeCCCc-cCccchhhhcCCcchhhhcc
Confidence 4688999999 999987 466655 5788 9999998776 677775 3467887764
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.13 E-value=1.6e-13 Score=128.51 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=78.9
Q ss_pred CCCCCcccccceEEecccCCCCCCCCC-CCCCccEEEecCCCcccccccccCCCCccEEeccCCCcccccC-CCcCCCcc
Q 047214 416 DGLDYLPKNLRYLHWDKYPLRTLPSNF-KPENLVELNLHFSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLE 493 (658)
Q Consensus 416 ~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~ 493 (658)
..+..++ +|++|++++|.++.+| .+ .+++|++|++++|.+..+|..+..+++|++|++++| .+..+| +..+++|+
T Consensus 42 ~~~~~l~-~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~~l~~L~ 118 (198)
T 1ds9_A 42 ATLSTLK-ACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSGIEKLVNLR 118 (198)
T ss_dssp HHHHHTT-TCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHHHHHHHHSS
T ss_pred HHHhcCC-CCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCccccCCCCC
Confidence 3666666 7888888888877777 33 777888888888887777776666777888888877 455566 77778888
Q ss_pred EEEeecCCcccccc--cccCCCCCCEEeccCCC
Q 047214 494 TYLLDYTNFACVPS--SIQNFKYLSALSFEGCK 524 (658)
Q Consensus 494 ~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~ 524 (658)
+|++++|.+..++. .+..+++|++|++++|.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 88888877776653 57777888888887774
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=4.4e-12 Score=118.67 Aligned_cols=131 Identities=17% Similarity=0.084 Sum_probs=74.2
Q ss_pred cccccccccCCCCccEEeccCCCcccccC-CCcCCCccEEEeecCCcccccccccCCCCCCEEeccCCCCCCcCCCCCCC
Q 047214 457 VEQLWEGKKEAFKLKSINLSHCRHFIDMS-YPSAPNLETYLLDYTNFACVPSSIQNFKYLSALSFEGCKSLRSFPSNFRF 535 (658)
Q Consensus 457 i~~l~~~~~~l~~L~~L~l~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 535 (658)
++.+|..+..+++|++|++++| .+..+| +..+++|+.|++++|.+..+|..+..+++|++|++++| .++.+|...
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~~~-- 112 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTN-NIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSGIE-- 112 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHHHH--
T ss_pred HhhhhHHHhcCCCCCEEECCCC-CCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCccc--
Confidence 3444445555555666666555 344455 55566666666666666666555555566666666655 233222111
Q ss_pred CCCcEEeccCCCCccccCcccCCccEEEccccccccccc--cccCCCCCCEEecCCCccchhhhh----------hhcCC
Q 047214 536 VCPVTINFSSCVNLIEFPQISGKITRLYLGQSAIEEVPS--SIECLTDLEVLDLRDCKRLKRIST----------RFCKL 603 (658)
Q Consensus 536 ~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~l 603 (658)
.+++|+.|++++|.+..++. .+..+++|++|++++|+.....|. .+..+
T Consensus 113 -------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 113 -------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp -------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred -------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 12345555555566665543 467788888888888875444333 25667
Q ss_pred CCCcEEe
Q 047214 604 RSLVDLF 610 (658)
Q Consensus 604 ~~L~~L~ 610 (658)
++|+.|+
T Consensus 174 ~~L~~Ld 180 (198)
T 1ds9_A 174 PNLKKLD 180 (198)
T ss_dssp SSCSEEC
T ss_pred CCcEEEC
Confidence 7777775
No 149
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=7.2e-10 Score=112.24 Aligned_cols=184 Identities=16% Similarity=0.251 Sum_probs=116.4
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-ccC-ceEEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-EFE-GRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f~-~~~~~~~~~~~~~~~~~~~ 100 (658)
.|..-..++||+..++.+.+++... ..+.+.|+|++|+|||++|+.+++.+.. .+. ..+++. .... ...+.
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~---~~~~~ 88 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDG---NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN-ASDD---RGIDV 88 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSC---CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC-TTSC---CSHHH
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcC---CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec-Cccc---cChHH
Confidence 3445577999999999999999763 3334889999999999999999998532 222 223333 1111 11122
Q ss_pred hHHHhhhcCCCCchhHHH---Hh-cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecchH-HHHhhcCCCce
Q 047214 101 LSEKLEVAGANIPHFTKE---RV-RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDKR-VLEKFRGEKKI 173 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~---~l-~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~~~~~~~ 173 (658)
+.+.+. .+.. .+ .+++.++|+||++... .++.+...+.....+..+|++|+... +..........
T Consensus 89 i~~~~~--------~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 89 VRNQIK--------HFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HHTHHH--------HHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHHH--------HHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 221111 0000 11 3458899999997753 34555555443346778888887653 22223345679
Q ss_pred EEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcch-hHHh
Q 047214 174 YRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLV-PKVL 223 (658)
Q Consensus 174 ~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-i~~~ 223 (658)
+.+.+++.++..+++...+...... -.++.++.+++.++|.|.. +..+
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~a~~~l 209 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVK--YTNDGLEAIIFTAEGDMRQAINNL 209 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999998865332221 1234578899999999954 4444
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=8.7e-10 Score=100.37 Aligned_cols=96 Identities=13% Similarity=0.231 Sum_probs=55.5
Q ss_pred ceEEecccCCCCCCCCCCCCCccEEEecCCCccccc-ccccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCC
Q 047214 426 RYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLW-EGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTN 501 (658)
Q Consensus 426 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~ 501 (658)
+.+++++++++.+|..+. .+|++|+|++|.++.++ ..+..+++|++|++++| .+..+| +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 445555555555555443 55666666666665553 33555566666666655 344444 4566666666666666
Q ss_pred ccccccc-ccCCCCCCEEeccCC
Q 047214 502 FACVPSS-IQNFKYLSALSFEGC 523 (658)
Q Consensus 502 ~~~~~~~-~~~l~~L~~L~l~~~ 523 (658)
+..+|.. +..+++|++|++++|
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS
T ss_pred cceeCHHHhccccCCCEEEeCCC
Confidence 6666543 566666666666665
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=1.1e-09 Score=99.45 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=57.1
Q ss_pred cceEEecccCCCCCCCCCCCCCccEEEecCCCccccc-ccccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecC
Q 047214 425 LRYLHWDKYPLRTLPSNFKPENLVELNLHFSKVEQLW-EGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYT 500 (658)
Q Consensus 425 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~ 500 (658)
.+.+++++++++.+|..+. .+|++|+|++|.++.++ ..+..+++|++|++++| .+..+| +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~-~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP-TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC-CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 3455666666666665442 55666666666666553 33556666666666666 344444 456666666666666
Q ss_pred Ccccccc-cccCCCCCCEEeccCC
Q 047214 501 NFACVPS-SIQNFKYLSALSFEGC 523 (658)
Q Consensus 501 ~~~~~~~-~~~~l~~L~~L~l~~~ 523 (658)
.+..+|+ .+..+++|++|++++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCC
Confidence 6666654 3566666666666665
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=2.1e-08 Score=104.08 Aligned_cols=210 Identities=11% Similarity=0.147 Sum_probs=120.1
Q ss_pred cCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCC-CCCCcccccceEEecccCCCCCCCCC--CCCCccEEEec
Q 047214 377 LDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPD-GLDYLPKNLRYLHWDKYPLRTLPSNF--KPENLVELNLH 453 (658)
Q Consensus 377 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~-~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~ 453 (658)
+....|.++ +|+.+.+..+ + ..++. .+.. . +|+.+.+.. .++.++... +|.+|+.++++
T Consensus 127 I~~~aF~~~-~L~~i~l~~~-i-------------~~I~~~aF~~-~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG-L-------------KSIGDMAFFN-S-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT-C-------------CEECTTTTTT-C-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred ehHhhcccC-CccEEEeCCC-c-------------cEECHHhcCC-C-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 445566664 6777777655 3 22333 3333 3 677777765 677666554 77888888888
Q ss_pred CCCcccccccccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccccccc-ccCCCCCCEEeccCCCCCCcC
Q 047214 454 FSKVEQLWEGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPSS-IQNFKYLSALSFEGCKSLRSF 529 (658)
Q Consensus 454 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~ 529 (658)
.|+++.++.......+|+.+.+..+ +..++ |.++++|+.+.+.. ++..++.. +.+ .+|+.+.+.+ .+..+
T Consensus 189 ~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~--~i~~I 262 (401)
T 4fdw_A 189 KTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPN--GVTNI 262 (401)
T ss_dssp TSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEET--TCCEE
T ss_pred CCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCC--CccEE
Confidence 8888877776445677888887643 44554 77788888888775 35555543 444 6777777754 35555
Q ss_pred CCC--CCCCCCcEEeccCCCCc----cccC----cccCCccEEEcccccccccccc-ccCCCCCCEEecCCCccchhh-h
Q 047214 530 PSN--FRFVCPVTINFSSCVNL----IEFP----QISGKITRLYLGQSAIEEVPSS-IECLTDLEVLDLRDCKRLKRI-S 597 (658)
Q Consensus 530 ~~~--~~~~~L~~L~l~~~~~l----~~~~----~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~-~ 597 (658)
+.. .++++|+.+.+.++... ..++ ..+.+|+.+++. +.+..++.. |.++++|+.+.+..+ +..+ .
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~ 339 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN--VTQINF 339 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT--CCEECT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc--ccEEcH
Confidence 442 25677777777654211 0111 223445555554 224444332 445555555555432 2222 2
Q ss_pred hhhcCCCCCcEEeccCC
Q 047214 598 TRFCKLRSLVDLFLHGC 614 (658)
Q Consensus 598 ~~~~~l~~L~~L~l~~~ 614 (658)
..|.++ +|+.+.+.++
T Consensus 340 ~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 340 SAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TSSSSS-CCCEEEECCS
T ss_pred HhCCCC-CCCEEEEcCC
Confidence 234455 5555555553
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=2.8e-09 Score=96.95 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=85.4
Q ss_pred CcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecCCCccccccc-c
Q 047214 388 LRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQLWEG-K 464 (658)
Q Consensus 388 L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~~-~ 464 (658)
-+.++++++.+ ..+|..+. .+|++|++++|.+..+++. + .+++|++|+|++|.++.+|.. +
T Consensus 14 ~~~l~~~~n~l-------------~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 77 (174)
T 2r9u_A 14 QTLVNCQNIRL-------------ASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVF 77 (174)
T ss_dssp SSEEECCSSCC-------------SSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CcEEEeCCCCC-------------CccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHh
Confidence 46888998887 44666554 4899999999999988654 4 899999999999999999876 5
Q ss_pred cCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCcccccc
Q 047214 465 KEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVPS 507 (658)
Q Consensus 465 ~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~ 507 (658)
..+++|++|++++| .+..+| +..+++|++|++++|.+...+.
T Consensus 78 ~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 78 DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CCcchhhEEECCCC-ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 78999999999998 555666 8889999999999998876654
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.96 E-value=1.6e-09 Score=109.81 Aligned_cols=181 Identities=19% Similarity=0.248 Sum_probs=116.5
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc-cC-ceEEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-FE-GRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f~-~~~~~~~~~~~~~~~~~~~ 100 (658)
.|..-..++|++..++.+.+++... ..+.+.|+|++|+|||++|+.+++.+... +. ..+.+. .... ...+.
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~~---~~~~~ 92 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTG---SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASDE---RGINV 92 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHT---CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTCH---HHHHT
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcC---CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-cccc---CchHH
Confidence 4555678999999999999999863 34458999999999999999999985322 11 122222 1110 11111
Q ss_pred hHHHhhhcCCCCchhHHHH-----h-cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecchH-HHHhhcCCC
Q 047214 101 LSEKLEVAGANIPHFTKER-----V-RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDKR-VLEKFRGEK 171 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~-----l-~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~~~~~ 171 (658)
+.+ .+.+. + .+++.++|+|+++... .++.++..+.....+.++|+||+... +........
T Consensus 93 ~~~-----------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 93 IRE-----------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp THH-----------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHH-----------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 111 11111 1 2567899999998753 45556555544456778888887653 112222334
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHh
Q 047214 172 KIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 172 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
..+.+.+++.++..+++...+..... .-.++..+.|++.++|.|..+..+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~ 211 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGL--ELTEEGLQAILYIAEGDMRRAINI 211 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC--EECHHHHHHHHHHHTTCHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHCCCCHHHHHHH
Confidence 58999999999999999887644322 122456788999999999865443
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.93 E-value=4.8e-09 Score=95.07 Aligned_cols=103 Identities=16% Similarity=0.235 Sum_probs=85.3
Q ss_pred CCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCC-C-CCCCccEEEecCCCccccccc-
Q 047214 387 NLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSN-F-KPENLVELNLHFSKVEQLWEG- 463 (658)
Q Consensus 387 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~~- 463 (658)
..+.++++++.+ ..+|..+. .++++|++++|.++.+++. + .+.+|++|+|++|.++.+|..
T Consensus 10 ~~~~l~~s~n~l-------------~~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 73 (170)
T 3g39_A 10 SGTTVDCSGKSL-------------ASVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV 73 (170)
T ss_dssp ETTEEECTTSCC-------------SSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCEEEeCCCCc-------------CccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh
Confidence 457889999987 34666553 4899999999999988654 4 899999999999999998876
Q ss_pred ccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccccc
Q 047214 464 KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVP 506 (658)
Q Consensus 464 ~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~ 506 (658)
+..+++|++|++++| .+..+| +..+++|++|++++|.+...+
T Consensus 74 f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 74 FDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 588999999999999 456665 889999999999999886544
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.92 E-value=3.9e-08 Score=102.02 Aligned_cols=217 Identities=11% Similarity=0.157 Sum_probs=150.4
Q ss_pred ccceEEecccCCCCCCCCC-CCCCccEEEecCCCccccccc-ccCCCCccEEeccCCCcccccC---CCcCCCccEEEee
Q 047214 424 NLRYLHWDKYPLRTLPSNF-KPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLD 498 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~ 498 (658)
+|+.+.+..+ ++.++... .-.+|+.+.+.. +++.++.. +..+.+|+.+++.+| .+..++ |. .++|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEe-ecccCEEEeC
Confidence 7888887664 77777654 224688888886 67766644 788899999999877 566666 55 5789998887
Q ss_pred cCCccccc-ccccCCCCCCEEeccCCCCCCcCCCCC-CCCCCcEEeccCCCCccccC----cccCCccEEEccccccc--
Q 047214 499 YTNFACVP-SSIQNFKYLSALSFEGCKSLRSFPSNF-RFVCPVTINFSSCVNLIEFP----QISGKITRLYLGQSAIE-- 570 (658)
Q Consensus 499 ~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~~~i~-- 570 (658)
. ++..++ ..+.++++|+.+.+.+ .+..++... .-.+|+.+.+.. .+..++ ..+.+|+.+.+.++.+.
T Consensus 212 ~-~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 212 V-TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp T-TCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred C-chheehhhHhhCCCCCCEEecCC--CccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 4 466665 3578888999999876 355555432 347888888854 344443 34578889998877665
Q ss_pred ---cccc-cccCCCCCCEEecCCCccchhh-hhhhcCCCCCcEEeccCCcCCccCC-----CCCCcccEEeccCCccccc
Q 047214 571 ---EVPS-SIECLTDLEVLDLRDCKRLKRI-STRFCKLRSLVDLFLHGCLNLQSLP-----ALPLCLKSLDLRDCKMLQS 640 (658)
Q Consensus 571 ---~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~-----~l~~~L~~L~l~~~~~l~~ 640 (658)
.++. .|.++++|+.+.+..+ +..+ ...|.+|.+|+.+.+..+ ++.++ ++ + |+.+++.++. +..
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~-L~~l~l~~n~-~~~ 359 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIPES--IRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-G-IKEVKVEGTT-PPQ 359 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-C-CCEEEECCSS-CCB
T ss_pred cccEECHHHhhCCccCCeEEeCCc--eEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-C-CCEEEEcCCC-Ccc
Confidence 4544 4788999999999853 4444 345888899999999653 55554 46 6 9999999875 334
Q ss_pred cCC----C-CCCccEEeccCC
Q 047214 641 LPE----L-PSCLEALDLTSC 656 (658)
Q Consensus 641 i~~----~-~~~L~~L~l~~~ 656 (658)
++. . ..++..|.+..+
T Consensus 360 l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 360 VFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCCSSCCCSCTTCCEEEECGG
T ss_pred cccccccCCCCCccEEEeCHH
Confidence 442 2 245777776543
No 157
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.91 E-value=1.5e-08 Score=104.73 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=116.4
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh----
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG---- 98 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~---- 98 (658)
.|..-..++||+.+++.+.+++... .....+.|+|++|+|||++|+.+++......... ... +.....-..+
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~--~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~-~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLG--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP-CGVCDNCREIEQGR 86 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHT--CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC-CSSSHHHHHHHTSC
T ss_pred CCCchhhccCcHHHHHHHHHHHHhC--CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC-CcccHHHHHHhccC
Confidence 3445567999999999999999763 2245788999999999999999998854221100 000 0000000000
Q ss_pred --hHhH-HHhhhcCCCCchhHHHHhc-----CcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecchH-HHHhh
Q 047214 99 --KILS-EKLEVAGANIPHFTKERVR-----RMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDKR-VLEKF 167 (658)
Q Consensus 99 --~~l~-~~l~~~~~~~~~~l~~~l~-----~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~ 167 (658)
+.+. ..-.....+..+.+.+.+. +++.++|+||++... ..+.++..+.....+..+|++|.... +....
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHH
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHH
Confidence 0000 0000001111223333332 457899999997653 45566555544345667777776543 22233
Q ss_pred cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhh
Q 047214 168 RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLG 224 (658)
Q Consensus 168 ~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a 224 (658)
......+.+.+++.++..+++.+.+...... ..++.++.|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~--~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIA--HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC--BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 3556899999999999999998765332221 223457889999999998766543
No 158
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.89 E-value=1e-08 Score=103.50 Aligned_cols=180 Identities=13% Similarity=0.170 Sum_probs=116.0
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cccC-ceEEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEFE-GRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~-~~~~~~~~~~~~~~~~~~~ 100 (658)
.|..-..++|++..++.+.+++... ..+.+.++|++|+|||++|+.+++.+. ..+. ..+.+. ...... .+.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~---~~~ 84 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERK---NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERG---IDV 84 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTT---CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTC---TTT
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCC---CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccC---hHH
Confidence 4555677999999999999988763 333488999999999999999999852 2221 122222 111100 000
Q ss_pred hHHHhhhcCCCCchhHHHHh------cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecchH-HHHhhcCCC
Q 047214 101 LSEKLEVAGANIPHFTKERV------RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDKR-VLEKFRGEK 171 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l------~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~~~~~ 171 (658)
..+.+.+.. .+++.++|+|+++... ..+.+...+.....+.++|++|.... +........
T Consensus 85 -----------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 85 -----------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp -----------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred -----------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhC
Confidence 111122211 2557899999997654 35556665554456677888876553 223333456
Q ss_pred ceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHH
Q 047214 172 KIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKV 222 (658)
Q Consensus 172 ~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 222 (658)
..+.+.+++.++..+++...+...... -.++.++.+++.++|.+..+..
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~ 202 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK--ITEDGLEALIYISGGDFRKAIN 202 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCC--BCHHHHHHHHHTTTTCHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 789999999999999998876443322 2244578888999999875443
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.89 E-value=2.1e-08 Score=101.44 Aligned_cols=263 Identities=14% Similarity=0.099 Sum_probs=151.2
Q ss_pred CCCCCCCcccccchHhhHHHHhccc--CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~--~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
.|..-..|+|++..++.+..++... .+.....+.|+|++|+|||++|+.+++.....| +++. ......
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~-~~~~~~------ 76 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS-GPAIEK------ 76 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC-TTTCCS------
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe-ccccCC------
Confidence 3445678999999999998888631 112346788999999999999999998764322 2332 111110
Q ss_pred hHHHhhhcCCCCchhHHHHhc---CcceEEEEeCCCCch--hhhhhhcccCCC------------------CCCCEEEEE
Q 047214 101 LSEKLEVAGANIPHFTKERVR---RMKVLIVLDDVNEVG--QLEGLIGELDQF------------------GPGSRIVVT 157 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~~--~~~~l~~~l~~~------------------~~~~~ilvt 157 (658)
...+...+. .+..+|++|+++... ....++..+... .++.++|.+
T Consensus 77 ------------~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 77 ------------PGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp ------------HHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred ------------hHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 111222222 356799999998764 233333222111 124567777
Q ss_pred ecchH-HHHhhcCCC-ceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhccccc------
Q 047214 158 TRDKR-VLEKFRGEK-KIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLCL------ 229 (658)
Q Consensus 158 tR~~~-~~~~~~~~~-~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~~------ 229 (658)
|.... ....+.... ..+.+.+++.++..+++...+...... -.++..+.+++.+.|+|-.+..+...+..
T Consensus 145 t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~ 222 (324)
T 1hqc_A 145 TTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAG 222 (324)
T ss_dssp ESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTS
T ss_pred CCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhc
Confidence 66442 222222333 589999999999999998876433221 22456788999999999876655433211
Q ss_pred c---cHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeee-cC-CCCCHHHHHHHhcc---ccccchHH
Q 047214 230 K---RKSHWENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIAC-FF-EGEDKDFVARILDD---SESDGLDV 301 (658)
Q Consensus 230 ~---~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~-fp-~~~~~~~l~~~~~~---~~~~~l~~ 301 (658)
. +......+... +...+..+++..+..+..+.. +. ..+....++..+.- .....++.
T Consensus 223 ~~~i~~~~~~~~~~~---------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~ 287 (324)
T 1hqc_A 223 EEVITRERALEALAA---------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEP 287 (324)
T ss_dssp CSCCCHHHHHHHHHH---------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHH
T ss_pred CCCCCHHHHHHHHHH---------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhH
Confidence 1 22222222221 222345566666666655443 32 23556666665544 22222333
Q ss_pred -hhhccCceeeCCeEEeehHHHHH
Q 047214 302 -LIDKSLISISGNCLQMHDLLQEM 324 (658)
Q Consensus 302 -L~~~~ll~~~~~~~~~H~~v~~~ 324 (658)
+++.++++.......+.+...++
T Consensus 288 ~~i~~~li~~~~~g~~~~~~~~~~ 311 (324)
T 1hqc_A 288 YLIRQGLLKRTPRGRVPTELAYRH 311 (324)
T ss_dssp HHHHTTSEEEETTEEEECHHHHHH
T ss_pred HHHHhcchhcCCccceecHHHHHH
Confidence 77889988765555555544444
No 160
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.88 E-value=3.2e-09 Score=98.38 Aligned_cols=151 Identities=11% Similarity=0.077 Sum_probs=86.6
Q ss_pred CCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc-------cCceEEEeccccccccch
Q 047214 25 DSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-------FEGRCFLSDIRKNSETGG 97 (658)
Q Consensus 25 ~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-------f~~~~~~~~~~~~~~~~~ 97 (658)
..-..++||+++++++.+++.. ...+.+.|+|++|+|||++|+.+++..... ....+++. .........
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~~---~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 94 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQR---RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD-MGALVAGAK 94 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS---SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC-HHHHHTTTC
T ss_pred ccccccccchHHHHHHHHHHhc---CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee-HHHHhccCC
Confidence 3457799999999999999875 345668899999999999999999985331 12223332 211110000
Q ss_pred -hhHhHHHhhhcCCCCchhHHHHh--cCcceEEEEeCCCCch---------hhhhhhcccCCCCCCCEEEEEecchHHH-
Q 047214 98 -GKILSEKLEVAGANIPHFTKERV--RRMKVLIVLDDVNEVG---------QLEGLIGELDQFGPGSRIVVTTRDKRVL- 164 (658)
Q Consensus 98 -~~~l~~~l~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~---------~~~~l~~~l~~~~~~~~ilvttR~~~~~- 164 (658)
....... ...+.+.+ .+++.+|||||++... .+..++..+.. ..+..+|+||......
T Consensus 95 ~~~~~~~~--------~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~ 165 (195)
T 1jbk_A 95 YRGEFEER--------LKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEYRQ 165 (195)
T ss_dssp SHHHHHHH--------HHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHHHH
T ss_pred ccccHHHH--------HHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHHHH
Confidence 0000000 11111111 2457899999997652 11222222211 2345677777665422
Q ss_pred -----HhhcCCCceEEcCCCChHHHHHHH
Q 047214 165 -----EKFRGEKKIYRVNGLEFEEAFEHF 188 (658)
Q Consensus 165 -----~~~~~~~~~~~l~~L~~~~~~~l~ 188 (658)
..+......+.+.+++.++..+++
T Consensus 166 ~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 YIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 222244457889999988876653
No 161
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.87 E-value=1.5e-08 Score=102.73 Aligned_cols=185 Identities=11% Similarity=0.048 Sum_probs=99.9
Q ss_pred cccccceEEecccCCCCCCCCC--CCCCccEEEecCCCccccccc-ccCCCCccEEeccCCC------cccccCCCcCCC
Q 047214 421 LPKNLRYLHWDKYPLRTLPSNF--KPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCR------HFIDMSYPSAPN 491 (658)
Q Consensus 421 l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~------~~~~~~l~~l~~ 491 (658)
++ +|+.|.|.. .++.++... +|.+|+.|+++.|.+..++.. +..+.++..+.+.... .+....+.++..
T Consensus 100 ~~-~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQ-TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CT-TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cC-CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 44 677777766 666666553 667777777777766655543 4555555555443311 011111222222
Q ss_pred cc--------------------------EEEeecCCcc-cccccccCCCCCCEEeccCCCCCCcCCCCC--CCCCCcEEe
Q 047214 492 LE--------------------------TYLLDYTNFA-CVPSSIQNFKYLSALSFEGCKSLRSFPSNF--RFVCPVTIN 542 (658)
Q Consensus 492 L~--------------------------~L~l~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~ 542 (658)
|+ .+.+.++-.. ........+++|+.|++.+| .++.++... ++++|+.++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEE
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEE
Confidence 22 2222221000 00000112566777777655 456665532 566777777
Q ss_pred ccCCCCccccCc----ccCCcc-EEEccccccccccc-cccCCCCCCEEecCCCccchhhhhhhcCCCCCcEEec
Q 047214 543 FSSCVNLIEFPQ----ISGKIT-RLYLGQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRISTRFCKLRSLVDLFL 611 (658)
Q Consensus 543 l~~~~~l~~~~~----~~~~L~-~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 611 (658)
+.++ +..++. .+.+|+ .+++.. .++.++. .|.++++|+.++++++.....-+..|.++++|+.+..
T Consensus 257 l~~n--i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 257 LPHN--LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCcc--cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 7664 444432 345676 777766 6666654 4788888888888776533333446788888887753
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.79 E-value=2.6e-08 Score=95.89 Aligned_cols=174 Identities=14% Similarity=0.137 Sum_probs=102.7
Q ss_pred CCCCCccccc---chHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHh
Q 047214 25 DSSNGLVGLN---SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 25 ~~~~~~vGR~---~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 101 (658)
..-+.|+|++ ..++.+.++... ...+.+.|+|++|+|||++|+.+++........++++. ...... .+
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~-----~~ 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASG---DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHAS-----IS 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHT---CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGG-----SC
T ss_pred CChhhccCCCCCHHHHHHHHHHHhC---CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHH-----HH
Confidence 3446788743 445566665543 34678899999999999999999998655444455555 222111 01
Q ss_pred HHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh----hhhhhcccCCC-CCC-CEEEEEecchH---------HHHh
Q 047214 102 SEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ----LEGLIGELDQF-GPG-SRIVVTTRDKR---------VLEK 166 (658)
Q Consensus 102 ~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----~~~l~~~l~~~-~~~-~~ilvttR~~~---------~~~~ 166 (658)
.+.+ +.+ .++.+||+||++.... .+.+...+... ..+ .++|+||+... +...
T Consensus 96 ~~~~------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r 162 (242)
T 3bos_A 96 TALL------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSR 162 (242)
T ss_dssp GGGG------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHH
T ss_pred HHHH------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhH
Confidence 1111 011 3467999999976532 23333322111 112 25788876432 1111
Q ss_pred hcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHh
Q 047214 167 FRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 167 ~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
+ .....+.+.+++.++..+++...+..... .-.++..+.+++.+.|++-.+..+
T Consensus 163 ~-~~~~~i~l~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 163 M-HWGLTYQLQPMMDDEKLAALQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp H-HHSEEEECCCCCGGGHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred h-hcCceEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHH
Confidence 1 12378999999999999999887643222 122456788889999987655544
No 163
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.75 E-value=6.1e-08 Score=99.30 Aligned_cols=195 Identities=12% Similarity=0.133 Sum_probs=114.1
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc--ccCc-eEEEeccccccccchh-
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS--EFEG-RCFLSDIRKNSETGGG- 98 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~--~f~~-~~~~~~~~~~~~~~~~- 98 (658)
.|..-..++|+++.++.+..++... ..+.+.|+|++|+||||+|+.+++.+.. .+.. .+.+. .........+
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~-~~~~~~~~~~~ 107 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSA---NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN-ASDERGISIVR 107 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCT---TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC-SSSCCCHHHHT
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcC---CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc-cccccchHHHH
Confidence 4556678999999999999999763 2233889999999999999999998532 1222 22222 1111000111
Q ss_pred hHhHHHhhhcCCCCchhHHHH-hcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecchH-HHHhhcCCCceE
Q 047214 99 KILSEKLEVAGANIPHFTKER-VRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDKR-VLEKFRGEKKIY 174 (658)
Q Consensus 99 ~~l~~~l~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~~~~~~~~ 174 (658)
+.+.................. -....-++++|+++... ....++..+.......++|++|.... +..........+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred HHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 111111111000000111111 12345699999987653 34445544433344667777775543 222222334688
Q ss_pred EcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHh
Q 047214 175 RVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 175 ~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~ 223 (658)
.+.+++.++..+.+...+...... -.++..+.|++.++|.|-.+...
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~~--i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENVK--CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999998876433221 22456788999999998764433
No 164
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.70 E-value=2.4e-07 Score=90.90 Aligned_cols=172 Identities=17% Similarity=0.171 Sum_probs=96.1
Q ss_pred CCCcccccchHhhHHHH-------hcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhh
Q 047214 27 SNGLVGLNSRIEQIKPF-------LCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGK 99 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~-------l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 99 (658)
...++|++..++++... +........+.+.|+|++|+|||++|+.+++.....| +.+........... .
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~~g~~~-~ 107 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKMIGFSE-T 107 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGCTTCCH-H
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHhcCCch-H
Confidence 45789999888777762 3221125678899999999999999999999854322 22221111000000 0
Q ss_pred HhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCc-----------h-hhhhhhcccCC---CCCCCEEEEEecchHHH
Q 047214 100 ILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEV-----------G-QLEGLIGELDQ---FGPGSRIVVTTRDKRVL 164 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-----------~-~~~~l~~~l~~---~~~~~~ilvttR~~~~~ 164 (658)
.....+ ...+......+..+|+||+++.. . ..+.+...+.. ......||.||......
T Consensus 108 ~~~~~~-------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l 180 (272)
T 1d2n_A 108 AKCQAM-------KKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL 180 (272)
T ss_dssp HHHHHH-------HHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH
T ss_pred HHHHHH-------HHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc
Confidence 000000 12233333456899999998653 1 12333332221 22334567777776543
Q ss_pred Hh--hcCC-CceEEcCCCCh-HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCC
Q 047214 165 EK--FRGE-KKIYRVNGLEF-EEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGN 216 (658)
Q Consensus 165 ~~--~~~~-~~~~~l~~L~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 216 (658)
.. ..+. ...+.+.+++. ++..+++.+.. . ...+....+++.+.|.
T Consensus 181 ~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~----~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 181 QEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N----FKDKERTTIAQQVKGK 229 (272)
T ss_dssp HHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C----SCHHHHHHHHHHHTTS
T ss_pred chhhhhcccceEEcCCCccHHHHHHHHHHhcC---C----CCHHHHHHHHHHhcCC
Confidence 33 2122 56789999988 56556655432 1 1134578888888884
No 165
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.67 E-value=4.8e-07 Score=91.91 Aligned_cols=252 Identities=13% Similarity=0.118 Sum_probs=144.3
Q ss_pred CCCCCCCcccccchHhhHHHHhccc--CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~--~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
.|..-..++|++..++.+..++... .+...+.+.|+|++|+|||++|+.+++.....| +.+. ..... .
T Consensus 24 ~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~~~---~--- 93 (338)
T 3pfi_A 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APMIE---K--- 93 (338)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGGCC---S---
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chhcc---c---
Confidence 4445678999999999999988742 113456789999999999999999998865433 2222 11100 0
Q ss_pred hHHHhhhcCCCCchhHHHHh--cCcceEEEEeCCCCch--hhhhhhcccCCC------------------CCCCEEEEEe
Q 047214 101 LSEKLEVAGANIPHFTKERV--RRMKVLIVLDDVNEVG--QLEGLIGELDQF------------------GPGSRIVVTT 158 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~--~~~~l~~~l~~~------------------~~~~~ilvtt 158 (658)
...+...+ ..+..+|+||+++... ....++..+... .++..+|.+|
T Consensus 94 ------------~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 94 ------------SGDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp ------------HHHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred ------------hhHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 11122222 2356899999998653 233333332211 1135667666
Q ss_pred cchH-HHHhhcCC-CceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhcccc------cc
Q 047214 159 RDKR-VLEKFRGE-KKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLC------LK 230 (658)
Q Consensus 159 R~~~-~~~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~------~~ 230 (658)
.... +...+... ...+.+.+++.++..+++...+..... ...++..+.+++.+.|+|-.+..+...+. +.
T Consensus 162 n~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~ 239 (338)
T 3pfi_A 162 TRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK--TCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDE 239 (338)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--EECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcC
Confidence 6543 22222223 378999999999999999877643221 22345678888899999855443332210 00
Q ss_pred ---cHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeeecC-CCCCHHHHHHHhcc---ccccchH-Hh
Q 047214 231 ---RKSHWENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIACFF-EGEDKDFVARILDD---SESDGLD-VL 302 (658)
Q Consensus 231 ---~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~fp-~~~~~~~l~~~~~~---~~~~~l~-~L 302 (658)
........+ .....+...++...++.+..++-.. .......++..+.. .....++ .|
T Consensus 240 ~~i~~~~~~~~~---------------~~~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l 304 (338)
T 3pfi_A 240 EIITEKRANEAL---------------NSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYL 304 (338)
T ss_dssp SEECHHHHHHHH---------------HHHTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHH
T ss_pred CccCHHHHHHHH---------------HHhCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHH
Confidence 111111111 1222333445544455555554442 22456666666654 3344556 78
Q ss_pred hhccCceeeCC
Q 047214 303 IDKSLISISGN 313 (658)
Q Consensus 303 ~~~~ll~~~~~ 313 (658)
++.+++.....
T Consensus 305 ~~~gli~~~~~ 315 (338)
T 3pfi_A 305 LANGYIERTAK 315 (338)
T ss_dssp HHTTSEEEETT
T ss_pred HHcCceecCCC
Confidence 89999987743
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.66 E-value=1.9e-07 Score=97.82 Aligned_cols=179 Identities=16% Similarity=0.246 Sum_probs=109.9
Q ss_pred CCCCCCCcccccchH---hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhh
Q 047214 23 ATDSSNGLVGLNSRI---EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGK 99 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~---~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 99 (658)
.|..-..++|.+..+ +.+...+.. +....+.|+|++|+||||+|+.+++.....|. .+.... ...+
T Consensus 21 rP~~l~~ivGq~~~~~~~~~L~~~i~~---~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~a~~-----~~~~ 89 (447)
T 3pvs_A 21 RPENLAQYIGQQHLLAAGKPLPRAIEA---GHLHSMILWGPPGTGKTTLAEVIARYANADVE---RISAVT-----SGVK 89 (447)
T ss_dssp CCCSTTTCCSCHHHHSTTSHHHHHHHH---TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEETTT-----CCHH
T ss_pred CCCCHHHhCCcHHHHhchHHHHHHHHc---CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEEecc-----CCHH
Confidence 445668899999988 788888876 44578999999999999999999998654432 122111 1112
Q ss_pred HhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEE-EecchH--HHHhhcCCCceE
Q 047214 100 ILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVV-TTRDKR--VLEKFRGEKKIY 174 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilv-ttR~~~--~~~~~~~~~~~~ 174 (658)
.+.+.+.. ........++.+|++|+++... ..+.++..+.. ....+|. ||.+.. +...+.....++
T Consensus 90 ~ir~~~~~-------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~ 160 (447)
T 3pvs_A 90 EIREAIER-------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVY 160 (447)
T ss_dssp HHHHHHHH-------HHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEE
T ss_pred HHHHHHHH-------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEE
Confidence 22222210 0011124568899999998764 34445544432 2344444 444442 223333556789
Q ss_pred EcCCCChHHHHHHHHHHhcCCC-----CCCchhHHHHHHHHHHcCCCcchhH
Q 047214 175 RVNGLEFEEAFEHFCNFAFEEN-----HCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 175 ~l~~L~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
.+.+++.++..+++.+.+.... ....-.++..+.|++.+.|.+-.+.
T Consensus 161 ~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 161 LLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp ECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred eeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999988764311 1112334567888888999876443
No 167
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.62 E-value=1e-07 Score=94.43 Aligned_cols=179 Identities=15% Similarity=0.181 Sum_probs=103.1
Q ss_pred CCCCCCCcccccchHhhHHHHhccc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKN 92 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~----------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 92 (658)
|...-..++|.+..++++.+++... .-...+.+.|+|++|+|||++|+.+++.....| +.+. ....
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~-~~~~ 87 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVV-GSEL 87 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEE-GGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hHHH
Confidence 4455678999999999999887531 002345688999999999999999998864432 1222 1111
Q ss_pred cccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----------------hhhhhhcccC--CCCCCCEE
Q 047214 93 SETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----------------QLEGLIGELD--QFGPGSRI 154 (658)
Q Consensus 93 ~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~l~--~~~~~~~i 154 (658)
... ........+ ...+.......+.+|+||+++... .+..++..+. ....+..|
T Consensus 88 ~~~-~~~~~~~~~-------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 159 (285)
T 3h4m_A 88 VKK-FIGEGASLV-------KDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKI 159 (285)
T ss_dssp CCC-STTHHHHHH-------HHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEE
T ss_pred HHh-ccchHHHHH-------HHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 100 000000000 122223334456899999996531 1222222221 12245667
Q ss_pred EEEecchHHH-Hhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCC
Q 047214 155 VVTTRDKRVL-EKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGN 216 (658)
Q Consensus 155 lvttR~~~~~-~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 216 (658)
|.||...... .... .....+.+...+.++..+++...........+. ....+++.+.|.
T Consensus 160 I~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~---~~~~l~~~~~g~ 222 (285)
T 3h4m_A 160 IGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDV---NLEEIAKMTEGC 222 (285)
T ss_dssp EEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHHCTTC
T ss_pred EEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcC---CHHHHHHHcCCC
Confidence 7787755321 1111 223479999999999999998876443222111 246778888774
No 168
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.4e-07 Score=93.29 Aligned_cols=164 Identities=11% Similarity=-0.012 Sum_probs=94.6
Q ss_pred CCcccccchHhhHHHHhccc-CCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc-----C--ceEEEeccccccccchh-
Q 047214 28 NGLVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF-----E--GRCFLSDIRKNSETGGG- 98 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~-~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f-----~--~~~~~~~~~~~~~~~~~- 98 (658)
..+.||++|++++...|... .++..+.+.|+|++|+|||++|+++++...... . ..+.+.+.........+
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 34899999999999888742 115677889999999999999999999864321 1 23444433332322223
Q ss_pred hHhHHHhhhc--CCCCchhHHHHh------cCcceEEEEeCCCCchhhhhhhcccC-CCCCCC--EEEEEecchH-----
Q 047214 99 KILSEKLEVA--GANIPHFTKERV------RRMKVLIVLDDVNEVGQLEGLIGELD-QFGPGS--RIVVTTRDKR----- 162 (658)
Q Consensus 99 ~~l~~~l~~~--~~~~~~~l~~~l------~~~~~LlvlDdv~~~~~~~~l~~~l~-~~~~~~--~ilvttR~~~----- 162 (658)
.+..++.+.. .....+.+.+.+ ++++++++||+++....-+.+...+. ....++ .+|.++...+
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 2223322211 111123333332 34579999999987642222222211 001223 3444444321
Q ss_pred H----HHhhcCCCceEEcCCCChHHHHHHHHHHhc
Q 047214 163 V----LEKFRGEKKIYRVNGLEFEEAFEHFCNFAF 193 (658)
Q Consensus 163 ~----~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~ 193 (658)
+ .+.+ ....+.+.+++.++..+.+..++.
T Consensus 180 L~~~v~SR~--~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 180 INIMPSLKA--HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHTCHHHHT--TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhhccC--CceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 1122 235799999999999999988763
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=1.5e-07 Score=96.09 Aligned_cols=88 Identities=20% Similarity=0.167 Sum_probs=57.7
Q ss_pred ecCCCCCCcccccceEEecc-cCCCCCCCC-C-CCCCccEEEecCCCccccccc-ccCCCCccEEeccCCCcccccC---
Q 047214 413 LLPDGLDYLPKNLRYLHWDK-YPLRTLPSN-F-KPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCRHFIDMS--- 485 (658)
Q Consensus 413 ~~p~~~~~l~~~L~~L~l~~-~~l~~lp~~-~-~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~--- 485 (658)
.+|. +..+. +|++|+|++ |.++.+|+. + .+.+|+.|+|++|.++.+++. +..+++|+.|+|++| .+..+|
T Consensus 23 ~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~ 99 (347)
T 2ifg_A 23 SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKT 99 (347)
T ss_dssp TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTT
T ss_pred ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHH
Confidence 3666 66666 777777775 777766643 3 677777777777777766553 567777777777777 444555
Q ss_pred CCcCCCccEEEeecCCccc
Q 047214 486 YPSAPNLETYLLDYTNFAC 504 (658)
Q Consensus 486 l~~l~~L~~L~l~~~~~~~ 504 (658)
+..++ |+.|++.+|.+.+
T Consensus 100 ~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 100 VQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TCSCC-CCEEECCSSCCCC
T ss_pred cccCC-ceEEEeeCCCccC
Confidence 44444 7777777766654
No 170
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.58 E-value=4.2e-07 Score=93.55 Aligned_cols=191 Identities=13% Similarity=0.066 Sum_probs=102.2
Q ss_pred CCCcccccchHhhH---HHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccc-cccchhhHhH
Q 047214 27 SNGLVGLNSRIEQI---KPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKN-SETGGGKILS 102 (658)
Q Consensus 27 ~~~~vGR~~~~~~l---~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~l~ 102 (658)
-..|+|++..++.+ .+.+.... ...+.+.|+|++|+|||++|+.+++......... .+....-. ......+.+.
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~-~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ 120 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK-IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT-AIAGSEIFSLEMSKTEALT 120 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC-CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEE-EEEGGGGSCSSSCHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC-CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcc-cccchhhhhcccchhHHHH
Confidence 45799999987764 44444322 2236889999999999999999999876432211 11111100 0000001111
Q ss_pred HHhhh-----------------------------------cCCCCchhHHHHh---------cCc----ceEEEEeCCCC
Q 047214 103 EKLEV-----------------------------------AGANIPHFTKERV---------RRM----KVLIVLDDVNE 134 (658)
Q Consensus 103 ~~l~~-----------------------------------~~~~~~~~l~~~l---------~~~----~~LlvlDdv~~ 134 (658)
+.+.. ........+++.+ .++ +.+|++|+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~ 200 (368)
T 3uk6_A 121 QAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHM 200 (368)
T ss_dssp HHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGG
T ss_pred HHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccc
Confidence 11100 0000011222211 122 35999999987
Q ss_pred ch--hhhhhhcccCCCCCCCEEEEEecc-------------hHHHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCC
Q 047214 135 VG--QLEGLIGELDQFGPGSRIVVTTRD-------------KRVLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCP 199 (658)
Q Consensus 135 ~~--~~~~l~~~l~~~~~~~~ilvttR~-------------~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~ 199 (658)
.. ....+...+.. .....++++|.. ..+...+......+.+.+++.++..+++...+.....
T Consensus 201 l~~~~~~~L~~~le~-~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~-- 277 (368)
T 3uk6_A 201 LDIESFSFLNRALES-DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV-- 277 (368)
T ss_dssp SBHHHHHHHHHHTTC-TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC--
T ss_pred cChHHHHHHHHHhhC-cCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC--
Confidence 64 34444444432 222334444431 1122222245567899999999999999877643322
Q ss_pred chhHHHHHHHHHHcC-CCcchhHH
Q 047214 200 EDLNWHSQRVVEYAD-GNPLVPKV 222 (658)
Q Consensus 200 ~~~~~~~~~i~~~~~-g~Plai~~ 222 (658)
.-.++..+.+++.+. |.|-.+..
T Consensus 278 ~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 278 EMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp CBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHH
Confidence 122446788888887 77755443
No 171
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.56 E-value=3.4e-07 Score=92.43 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=106.8
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILS 102 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 102 (658)
.|..-.+++|++..++.+.+++... ....++.++|++|+|||++|+.+++.... ..+.+. ..... .+.+.
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~--~~~~~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~-~~~~~----~~~i~ 90 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKG--KIPHIILHSPSPGTGKTTVAKALCHDVNA---DMMFVN-GSDCK----IDFVR 90 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTT--CCCSEEEECSSTTSSHHHHHHHHHHHTTE---EEEEEE-TTTCC----HHHHH
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcC--CCCeEEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEc-ccccC----HHHHH
Confidence 4556688999999999999999853 33467888999999999999999988632 223333 11111 11111
Q ss_pred HHhhhcCCCCchhHHHH--hcCcceEEEEeCCCCch---hhhhhhcccCCCCCCCEEEEEecchH-HHHhhcCCCceEEc
Q 047214 103 EKLEVAGANIPHFTKER--VRRMKVLIVLDDVNEVG---QLEGLIGELDQFGPGSRIVVTTRDKR-VLEKFRGEKKIYRV 176 (658)
Q Consensus 103 ~~l~~~~~~~~~~l~~~--l~~~~~LlvlDdv~~~~---~~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~~~~~~~~~l 176 (658)
+.+. ...+. ..+++.++++|+++... ..+.+...+.....+.++|+||.... +..........+.+
T Consensus 91 ~~~~--------~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~ 162 (324)
T 3u61_B 91 GPLT--------NFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITF 162 (324)
T ss_dssp THHH--------HHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEEC
T ss_pred HHHH--------HHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEe
Confidence 1111 00000 12367899999998865 34444444332234678888887653 11222233468999
Q ss_pred CCCChHHHHHHH-------HHHhcCCCCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 177 NGLEFEEAFEHF-------CNFAFEENHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 177 ~~L~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
.+++.++-.+++ ...+.......++ .+.++.+++.++|.+-.+.
T Consensus 163 ~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~-~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 163 GQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD-MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC-HHHHHHHHHHTCSCTTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHhCCCCHHHHH
Confidence 999988743332 2222211111111 2567888888888876433
No 172
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.55 E-value=2.6e-07 Score=99.23 Aligned_cols=188 Identities=13% Similarity=0.171 Sum_probs=109.1
Q ss_pred CCCCCCCcccccchHhhHHHHhcccC--------------CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEec
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDL--------------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSD 88 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~--------------~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~ 88 (658)
.|..-.+++|++..++++.+|+.... .+..+.+.|+|++|+|||++|+.+++... + .++.+.
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~-~~i~in- 109 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--Y-DILEQN- 109 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--C-EEEEEC-
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--C-CEEEEe-
Confidence 45566789999999999999997410 01347899999999999999999999862 1 122333
Q ss_pred cccccccchhhHhHHHhhhcC--CCCchhHHHH-----hcCcceEEEEeCCCCchh-----hhhhhcccCCCCCCCEEEE
Q 047214 89 IRKNSETGGGKILSEKLEVAG--ANIPHFTKER-----VRRMKVLIVLDDVNEVGQ-----LEGLIGELDQFGPGSRIVV 156 (658)
Q Consensus 89 ~~~~~~~~~~~~l~~~l~~~~--~~~~~~l~~~-----l~~~~~LlvlDdv~~~~~-----~~~l~~~l~~~~~~~~ilv 156 (658)
....... ..+...+.... ......+... ...++.+|++|+++.... +..+...+. ..+..||+
T Consensus 110 ~s~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIl 184 (516)
T 1sxj_A 110 ASDVRSK---TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLIL 184 (516)
T ss_dssp TTSCCCH---HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEE
T ss_pred CCCcchH---HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEE
Confidence 2211111 11111111100 0011111111 235678999999976431 234433332 13445666
Q ss_pred EecchH--HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 157 TTRDKR--VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 157 ttR~~~--~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
++.... ...........+.+.+++.++..+.+...+.......+ ++.+..|++.++|.+-.+.
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i 249 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVI 249 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHH
Confidence 655432 11222345678999999999999988776543322111 2347889999999664433
No 173
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.54 E-value=9.1e-08 Score=98.02 Aligned_cols=195 Identities=12% Similarity=0.136 Sum_probs=109.1
Q ss_pred CCCCCCCcccccchHhhHHHHh-cccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEec-------------
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFL-CMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSD------------- 88 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l-~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~------------- 88 (658)
.|..-..++|++..++.+.+++ ... +.+.+.|+|+.|+||||+|+.++..+...-...+.+..
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~---~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~ 85 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPR---DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLEL 85 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTT---CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCC---CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccccee
Confidence 4556678999999999999988 542 22238999999999999999999963221111111100
Q ss_pred ------------cccccccchhhHhHHHhhhcCCCC-chhHH--HHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCC
Q 047214 89 ------------IRKNSETGGGKILSEKLEVAGANI-PHFTK--ERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPG 151 (658)
Q Consensus 89 ------------~~~~~~~~~~~~l~~~l~~~~~~~-~~~l~--~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~ 151 (658)
......... ..+.+.+....... ..... ..+..++-++|+|+++... ..+.+...+.....+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 86 NVVSSPYHLEITPSDMGNNDR-IVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp CCEECSSEEEECCC----CCH-HHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred eeecccceEEecHhhcCCcch-HHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 000000000 00111111000000 00000 0012356799999998754 234444444333456
Q ss_pred CEEEEEecchH-HHHhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchh-HHHHHHHHHHcCCCcchhHHh
Q 047214 152 SRIVVTTRDKR-VLEKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDL-NWHSQRVVEYADGNPLVPKVL 223 (658)
Q Consensus 152 ~~ilvttR~~~-~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plai~~~ 223 (658)
..+|++|.+.. +.......+..+.+.+++.++..+.+...+...... -. ++.++.|++.++|.+-.+..+
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ--LETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE--ECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHcCCCHHHHHHH
Confidence 78888877642 223333556899999999999999998776432221 11 345788999999988654433
No 174
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.54 E-value=9.4e-07 Score=90.19 Aligned_cols=187 Identities=16% Similarity=0.097 Sum_probs=105.7
Q ss_pred CCCCCCCcccccchHhhHHHHhccc---------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS 93 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~---------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 93 (658)
++..-..++|.+..++.+.+++... .....+.+.|+|++|+|||++|+.+++.....| +.+. .....
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~i~-~~~l~ 154 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF---FSIS-ASSLT 154 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE---EEEE-GGGGC
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE---EEEe-hHHhh
Confidence 4455678999999999999887520 013456788999999999999999998754322 2222 22111
Q ss_pred ccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-------------hhhhhhcccCC----CCCCCEEEE
Q 047214 94 ETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-------------QLEGLIGELDQ----FGPGSRIVV 156 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~l~~----~~~~~~ilv 156 (658)
.. ........+ ...+...-..++.+|+||+++... ....++..+.. ...+..||.
T Consensus 155 ~~-~~g~~~~~~-------~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~ 226 (357)
T 3d8b_A 155 SK-WVGEGEKMV-------RALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVG 226 (357)
T ss_dssp CS-STTHHHHHH-------HHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEE
T ss_pred cc-ccchHHHHH-------HHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEE
Confidence 10 000000000 111222223567899999985431 12333333221 123445666
Q ss_pred EecchH-HHHhhc-CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCC-cchhHHh
Q 047214 157 TTRDKR-VLEKFR-GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGN-PLVPKVL 223 (658)
Q Consensus 157 ttR~~~-~~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 223 (658)
||.... +..... .....+.+...+.++..+++...+...... -.++..+.|++.+.|. +-.+..+
T Consensus 227 atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 227 ATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp EESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHH
Confidence 776542 222221 233578889999999999888776432211 1234578888988884 3344443
No 175
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.51 E-value=5.9e-09 Score=107.12 Aligned_cols=35 Identities=11% Similarity=0.100 Sum_probs=18.5
Q ss_pred CCCccEEEeecCCccc-----ccccccCCCCCCEEeccCC
Q 047214 489 APNLETYLLDYTNFAC-----VPSSIQNFKYLSALSFEGC 523 (658)
Q Consensus 489 l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~L~l~~~ 523 (658)
.++|++|++++|.+.. ++..+..+++|++|++++|
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 3455555555555532 2333455556666666655
No 176
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.50 E-value=1.8e-08 Score=103.59 Aligned_cols=18 Identities=22% Similarity=0.037 Sum_probs=10.6
Q ss_pred ccCCCCCCEEecCCCccc
Q 047214 576 IECLTDLEVLDLRDCKRL 593 (658)
Q Consensus 576 ~~~l~~L~~L~l~~~~~~ 593 (658)
+...++|++|++++|...
T Consensus 235 L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 235 AREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHCSSCCEEECTTSSCC
T ss_pred HHhCCCCCEEeccCCCCC
Confidence 444566666666666543
No 177
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.49 E-value=2e-07 Score=85.54 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=42.4
Q ss_pred CCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
.-..++||+.+++.+.+++.. ...+.+.|+|++|+|||++|+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~---~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSR---RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTS---SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhC---CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 456799999999999999875 33556789999999999999999998543
No 178
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.48 E-value=9.7e-07 Score=88.82 Aligned_cols=180 Identities=13% Similarity=0.112 Sum_probs=103.8
Q ss_pred CCCCCCCcccccchHhhHHHHhcc---------cCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCM---------DLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS 93 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~---------~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 93 (658)
|...=..++|.+..++.|.+++.. ......+.+.|+|++|+|||++|+++++.....| +.+. ...
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~~-- 86 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSD-- 86 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HHH--
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hHH--
Confidence 445557899999999999988731 1112346789999999999999999999864432 2222 111
Q ss_pred ccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh-------------hhhhhcccC---CCCCCCEEEEE
Q 047214 94 ETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ-------------LEGLIGELD---QFGPGSRIVVT 157 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-------------~~~l~~~l~---~~~~~~~ilvt 157 (658)
+.....+.........+...-..++.+|+||+++.... ...++..+. ....+..||.|
T Consensus 87 ------l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~a 160 (322)
T 3eie_A 87 ------LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 160 (322)
T ss_dssp ------HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEE
T ss_pred ------HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEe
Confidence 01111110000001122223334678999999975421 233333322 22345566667
Q ss_pred ecchHH-HHhh-cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCC
Q 047214 158 TRDKRV-LEKF-RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGN 216 (658)
Q Consensus 158 tR~~~~-~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 216 (658)
|..+.. ...+ ......+.+...+.++-.+++...+....... .......|++.+.|.
T Consensus 161 tn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 161 TNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL--TKEDYRTLGAMTEGY 219 (322)
T ss_dssp ESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC--CHHHHHHHHHTTTTC
T ss_pred cCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC--CHHHHHHHHHHcCCC
Confidence 765421 1111 12345788899999999999988774432211 123567888888874
No 179
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.47 E-value=5e-07 Score=94.76 Aligned_cols=180 Identities=17% Similarity=0.137 Sum_probs=102.8
Q ss_pred CCcc-cccchH--hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccC--ceEEEeccccccccchhhHhH
Q 047214 28 NGLV-GLNSRI--EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE--GRCFLSDIRKNSETGGGKILS 102 (658)
Q Consensus 28 ~~~v-GR~~~~--~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~ 102 (658)
+.|+ |..... ..+.++.... .....+.|+|++|+||||||+.+++.....+. .++++. .... ...+.
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~--~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~~~~-----~~~~~ 176 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHP--GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SEKF-----LNDLV 176 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHST--TSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-HHHH-----HHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHH-----HHHHH
Confidence 3455 654433 2333333332 22678999999999999999999998655432 233333 1111 11111
Q ss_pred HHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----hhhhhhcccCC-CCCCCEEEEEecch---------HHHHhhc
Q 047214 103 EKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----QLEGLIGELDQ-FGPGSRIVVTTRDK---------RVLEKFR 168 (658)
Q Consensus 103 ~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----~~~~l~~~l~~-~~~~~~ilvttR~~---------~~~~~~~ 168 (658)
..+. ......+.+.++.+.-+|++||++... ..+.+...+.. ...+..||+||.+. .+...+
T Consensus 177 ~~~~---~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~- 252 (440)
T 2z4s_A 177 DSMK---EGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRF- 252 (440)
T ss_dssp HHHH---TTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHH-
T ss_pred HHHH---cccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhc-
Confidence 1111 112334455555467899999996543 22333333211 13567888888763 223323
Q ss_pred CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhH
Q 047214 169 GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPK 221 (658)
Q Consensus 169 ~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~ 221 (658)
.....+.+.+++.++..+++.+.+....... .++.+..|++.+.|.+-.+.
T Consensus 253 ~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i--~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 253 QMGLVAKLEPPDEETRKSIARKMLEIEHGEL--PEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HSSBCCBCCCCCHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHCCSCHHHHH
T ss_pred cCCeEEEeCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHH
Confidence 3346788999999999999988764222111 12346778888888875444
No 180
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.46 E-value=3.2e-06 Score=85.36 Aligned_cols=170 Identities=13% Similarity=0.095 Sum_probs=104.9
Q ss_pred cchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc---------------------CceEEEeccccc
Q 047214 34 NSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF---------------------EGRCFLSDIRKN 92 (658)
Q Consensus 34 ~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f---------------------~~~~~~~~~~~~ 92 (658)
++..+.+.+.+... .-...+.++|+.|+|||++|+.+++.+.... ....++. ....
T Consensus 8 ~~~~~~l~~~i~~~--~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~-~~~~ 84 (334)
T 1a5t_A 8 RPDFEKLVASYQAG--RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLA-PEKG 84 (334)
T ss_dssp HHHHHHHHHHHHTT--CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEEC-CCTT
T ss_pred HHHHHHHHHHHHcC--CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEe-cccc
Confidence 34456666666542 2345788999999999999999999843211 1112221 0000
Q ss_pred cccchhhHhHHHhhhcCCCCchhHHHHh-----cCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecchH-HH
Q 047214 93 SETGGGKILSEKLEVAGANIPHFTKERV-----RRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDKR-VL 164 (658)
Q Consensus 93 ~~~~~~~~l~~~l~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~~-~~ 164 (658)
.....++.+. .+.+.+ .+++-++|+|+++... ..+.++..+..-..+..+|++|.++. +.
T Consensus 85 ~~~~~i~~ir------------~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~ 152 (334)
T 1a5t_A 85 KNTLGVDAVR------------EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLL 152 (334)
T ss_dssp CSSBCHHHHH------------HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSC
T ss_pred CCCCCHHHHH------------HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCc
Confidence 0001111111 122222 2457899999998764 35566666554445667777776653 34
Q ss_pred HhhcCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhc
Q 047214 165 EKFRGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGS 225 (658)
Q Consensus 165 ~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~ 225 (658)
....+.+..+.+.+++.++..+.+.+.. ...++.+..+++.++|.|..+..+..
T Consensus 153 ~ti~SRc~~~~~~~~~~~~~~~~L~~~~-------~~~~~~~~~l~~~s~G~~r~a~~~l~ 206 (334)
T 1a5t_A 153 ATLRSRCRLHYLAPPPEQYAVTWLSREV-------TMSQDALLAALRLSAGSPGAALALFQ 206 (334)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHC-------CCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred HHHhhcceeeeCCCCCHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 4444667899999999999999998875 11134567899999999986655544
No 181
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.46 E-value=1.4e-06 Score=86.74 Aligned_cols=182 Identities=13% Similarity=0.127 Sum_probs=106.0
Q ss_pred CCCCCCCcccccchHhhHHHHhccc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKN 92 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~----------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 92 (658)
|...-..++|.+..++++.+++... .-...+.+.|+|++|+|||++|+.++......| +.+. ..
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-~~-- 83 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-GP-- 83 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC-HH--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE-hH--
Confidence 4445567999999998888877531 003456788999999999999999999864322 2222 11
Q ss_pred cccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----------------hhhhhhcccCC--CCCCCEE
Q 047214 93 SETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----------------QLEGLIGELDQ--FGPGSRI 154 (658)
Q Consensus 93 ~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~l~~--~~~~~~i 154 (658)
++.....+.........+.......+.++++|+++... ....++..+.. ...+..|
T Consensus 84 ------~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~v 157 (301)
T 3cf0_A 84 ------ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 157 (301)
T ss_dssp ------HHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEE
T ss_pred ------HHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEE
Confidence 12222222221111233333344567999999997432 12334433321 1235567
Q ss_pred EEEecchH-HHHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcch
Q 047214 155 VVTTRDKR-VLEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLV 219 (658)
Q Consensus 155 lvttR~~~-~~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 219 (658)
|.||.... +..... .....+.+...+.++-.+++...........+. ....+++.+.|.|-+
T Consensus 158 i~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~---~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 158 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV---DLEFLAKMTNGFSGA 223 (301)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC---CHHHHHHTCSSCCHH
T ss_pred EEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc---hHHHHHHHcCCCCHH
Confidence 77776653 222221 234588999999999889888776433221111 135566777777643
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.45 E-value=2e-06 Score=83.72 Aligned_cols=180 Identities=18% Similarity=0.205 Sum_probs=98.9
Q ss_pred CCCCcccccchHhhHHHHhcc---cC------CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccc
Q 047214 26 SSNGLVGLNSRIEQIKPFLCM---DL------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETG 96 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~---~~------~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 96 (658)
.-..++|.+..++.+.+++.. .. ....+.+.|+|++|+|||++|+.+++.....| +.+. ........
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~ 79 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVI 79 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhc
Confidence 346789999888888776541 10 02345688999999999999999999864332 2222 11111000
Q ss_pred hhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-----------------hhhhhhcccCCC--CCCCEEEEE
Q 047214 97 GGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-----------------QLEGLIGELDQF--GPGSRIVVT 157 (658)
Q Consensus 97 ~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------------~~~~l~~~l~~~--~~~~~ilvt 157 (658)
.......+ ...+.......+.+|++|+++... .+..++..+... ..+..+|.|
T Consensus 80 -~~~~~~~~-------~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~ 151 (262)
T 2qz4_A 80 -GGLGAARV-------RSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLAS 151 (262)
T ss_dssp -TTHHHHHH-------HHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEE
T ss_pred -cChhHHHH-------HHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEec
Confidence 00000000 122333334457899999997651 122333332211 234566667
Q ss_pred ecchHH-HHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 158 TRDKRV-LEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 158 tR~~~~-~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
|..... ..... .....+.+...+.++..+++...+...... .........+++.+.|.+-
T Consensus 152 tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 152 TNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT-QSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp ESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC-BTHHHHHHHHHHTCTTCCH
T ss_pred CCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC-cchhhHHHHHHHHCCCCCH
Confidence 765432 12221 223678899999999999998776432221 1222234778888888754
No 183
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.42 E-value=7.2e-07 Score=91.01 Aligned_cols=96 Identities=17% Similarity=0.205 Sum_probs=80.8
Q ss_pred eEEeccc-CCCCCCCCC-CCCCccEEEecC-CCcccccc-cccCCCCccEEeccCCCcccccC---CCcCCCccEEEeec
Q 047214 427 YLHWDKY-PLRTLPSNF-KPENLVELNLHF-SKVEQLWE-GKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDY 499 (658)
Q Consensus 427 ~L~l~~~-~l~~lp~~~-~l~~L~~L~L~~-~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~ 499 (658)
.++++++ +++.+|. + .+.+|+.|+|++ |.+..+|. .+..+.+|+.|+|++|. +..++ |.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 4577887 8999999 6 889999999996 99998885 58899999999999994 55555 78999999999999
Q ss_pred CCcccccccccCCCCCCEEeccCCC
Q 047214 500 TNFACVPSSIQNFKYLSALSFEGCK 524 (658)
Q Consensus 500 ~~~~~~~~~~~~l~~L~~L~l~~~~ 524 (658)
|.+..+|..+.....|+.|++.+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CccceeCHHHcccCCceEEEeeCCC
Confidence 9999988765444449999999874
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.41 E-value=1.3e-06 Score=87.54 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=90.6
Q ss_pred CcccccchHhhHHHHhccc------------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccC----ceEEEeccccc
Q 047214 29 GLVGLNSRIEQIKPFLCMD------------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFE----GRCFLSDIRKN 92 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~~------------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~----~~~~~~~~~~~ 92 (658)
.++|.+..++.+.+++... .......+.|+|++|+|||++|+.+++.+..... ..+.+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 4899999999888766521 0134557899999999999999999988543211 222222 1111
Q ss_pred cccchhhHhHHHhhhcCCCCchhHHHHhc-CcceEEEEeCCCCc-----------hhhhhhhcccCCCCCCCEEEEEecc
Q 047214 93 SETGGGKILSEKLEVAGANIPHFTKERVR-RMKVLIVLDDVNEV-----------GQLEGLIGELDQFGPGSRIVVTTRD 160 (658)
Q Consensus 93 ~~~~~~~~l~~~l~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~-----------~~~~~l~~~l~~~~~~~~ilvttR~ 160 (658)
.....+. ....+.+.+. .+..+|++|+++.. .....++..+.....+..+|+||..
T Consensus 111 --------~~~~~g~----~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 111 --------VGQYIGH----TAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp --------CCSSTTC----HHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred --------hhhcccc----cHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 0000000 0111122221 13569999999733 2345555555444556788888865
Q ss_pred hHHH------HhhcCC-CceEEcCCCChHHHHHHHHHHhc
Q 047214 161 KRVL------EKFRGE-KKIYRVNGLEFEEAFEHFCNFAF 193 (658)
Q Consensus 161 ~~~~------~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~ 193 (658)
.... ..+... ...+.+.+++.++..+++...+.
T Consensus 179 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 179 DRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 4321 111112 37899999999999999987764
No 185
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=3.2e-07 Score=93.38 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=90.9
Q ss_pred CCcCCCccEEEeecCCcc----------cccccccCCCCCCEEeccCCCCCCcCCCCCCCCCCcEEeccCCCCcccc---
Q 047214 486 YPSAPNLETYLLDYTNFA----------CVPSSIQNFKYLSALSFEGCKSLRSFPSNFRFVCPVTINFSSCVNLIEF--- 552 (658)
Q Consensus 486 l~~l~~L~~L~l~~~~~~----------~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~l~~~--- 552 (658)
+..+++|+.|.+...... .++..+..+|+|+.|.+++|..+ .++. ..+++|+.|++..|......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHHHHH
Confidence 446789999988653221 24345677899999999887433 3444 35788999998876432111
Q ss_pred -C-cccCCccEEEccc--cc------cccccccc--cCCCCCCEEecCCCccchhhhhhh---cCCCCCcEEeccCCcCC
Q 047214 553 -P-QISGKITRLYLGQ--SA------IEEVPSSI--ECLTDLEVLDLRDCKRLKRISTRF---CKLRSLVDLFLHGCLNL 617 (658)
Q Consensus 553 -~-~~~~~L~~L~l~~--~~------i~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~l 617 (658)
. ..+++|+.|+|+. +. +..+...+ ..+|+|++|++++|......+..+ ..+++|++|+|+.|. +
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L 291 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-L 291 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-C
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-C
Confidence 1 1356888888752 11 22222222 357888888888877554333222 247788888887654 4
Q ss_pred cc-----C----CCCCCcccEEeccCCc
Q 047214 618 QS-----L----PALPLCLKSLDLRDCK 636 (658)
Q Consensus 618 ~~-----l----~~l~~~L~~L~l~~~~ 636 (658)
+. + +.++. |+.|++++|.
T Consensus 292 ~d~G~~~L~~~L~~l~~-L~~L~L~~n~ 318 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKH-LKFINMKYNY 318 (362)
T ss_dssp BHHHHHHHHTTHHHHTT-CSEEECCSBB
T ss_pred ChHHHHHHHhhcccCCc-ceEEECCCCc
Confidence 33 2 23577 8888888775
No 186
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.37 E-value=4.5e-06 Score=87.65 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=103.2
Q ss_pred CCCCCCCcccccchHhhHHHHhccc---------CCCCeEEEEEEcCCCCcHHHHHHHHHHhh-ccccCceEEEeccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSEFEGRCFLSDIRKN 92 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~---------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~f~~~~~~~~~~~~ 92 (658)
|+..-..++|.+...+.|.+.+... .....+.+.|+|++|+|||++|+.++... ...| +.+. ...
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~---~~v~-~~~- 203 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSD- 203 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEE---EEEC-CC--
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCE---EEEe-HHH-
Confidence 4455577999999999998877310 00234678899999999999999999986 2211 1122 111
Q ss_pred cccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-------------hhhhhhcccCC---CCCCCEEEE
Q 047214 93 SETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-------------QLEGLIGELDQ---FGPGSRIVV 156 (658)
Q Consensus 93 ~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~l~~---~~~~~~ilv 156 (658)
+.....+.........+...-...+.+|+||+++... ....++..+.. ...+..||.
T Consensus 204 -------l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~ 276 (444)
T 2zan_A 204 -------LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 276 (444)
T ss_dssp ---------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEE
T ss_pred -------HHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEe
Confidence 1111111111111222222334567899999997641 12233333322 134556777
Q ss_pred EecchH-HHHhhc-CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 157 TTRDKR-VLEKFR-GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 157 ttR~~~-~~~~~~-~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
||..+. +...+. .....+.+...+.++..+++...+...... ........|++.+.|..
T Consensus 277 atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 277 ATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS--LTEADFQELGRKTDGYS 337 (444)
T ss_dssp EESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE--CCHHHHHHHHHHTTTCC
T ss_pred cCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCC
Confidence 776553 222221 233578888888888889988876432211 12335678888888854
No 187
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.37 E-value=2.5e-06 Score=86.90 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=104.2
Q ss_pred CCCCCCCcccccchHhhHHHHhccc---------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS 93 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~---------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 93 (658)
++..-..++|.+..++.|.+.+... .....+.+.|+|++|+|||++|+.+++.....| +.+. ...
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~~-- 119 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSD-- 119 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HHH--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HHH--
Confidence 4455577999999999999877311 112235688999999999999999999864332 1122 111
Q ss_pred ccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh-------------hhhhhcccC---CCCCCCEEEEE
Q 047214 94 ETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ-------------LEGLIGELD---QFGPGSRIVVT 157 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~-------------~~~l~~~l~---~~~~~~~ilvt 157 (658)
+.....+.........+...-..++.+|+||+++.... ...++..+. ....+..||.|
T Consensus 120 ------l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~a 193 (355)
T 2qp9_X 120 ------LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 193 (355)
T ss_dssp ------HHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEE
T ss_pred ------HhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEee
Confidence 00000000000001112222235678999999975421 233333321 11345566667
Q ss_pred ecchH-HHHhh-cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCC-cchhHHh
Q 047214 158 TRDKR-VLEKF-RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGN-PLVPKVL 223 (658)
Q Consensus 158 tR~~~-~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plai~~~ 223 (658)
|..+. +...+ ......+.+...+.++-.+++...+....... .......|++.+.|. +-.|..+
T Consensus 194 tn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~--~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 194 TNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL--TKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp ESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 76542 11111 13346788999999999999988764432111 133568888999884 3334433
No 188
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.35 E-value=1.8e-06 Score=91.36 Aligned_cols=149 Identities=14% Similarity=0.153 Sum_probs=84.1
Q ss_pred CCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc------CceEEEeccccccccchhh
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF------EGRCFLSDIRKNSETGGGK 99 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 99 (658)
.-+.++||+.+++.+...+... ....+.|+|++|+|||++|+.+++.+...+ ...++.....
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~---~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~--------- 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRR---TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG--------- 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS---SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCccCcHHHHHHHHHHHhcc---CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---------
Confidence 3457999999999999998752 344567999999999999999999854321 1112111111
Q ss_pred HhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchH------HHHhhcCCCce
Q 047214 100 ILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKR------VLEKFRGEKKI 173 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~------~~~~~~~~~~~ 173 (658)
....+.........+.+.-...+.+|++| -..+....++..+. ....++|.+|.... ....+......
T Consensus 246 --~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~ 319 (468)
T 3pxg_A 246 --TKYRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQP 319 (468)
T ss_dssp ---------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE
T ss_pred --ccccchHHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCcc
Confidence 00001000111222233333567899999 22222233333332 23456666665443 11222234567
Q ss_pred EEcCCCChHHHHHHHHHHh
Q 047214 174 YRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 174 ~~l~~L~~~~~~~l~~~~~ 192 (658)
+.+...+.++..+++....
T Consensus 320 i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 320 IQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp EECCCCCHHHHHHHHHHTT
T ss_pred ceeCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=3.1e-06 Score=85.89 Aligned_cols=181 Identities=14% Similarity=0.204 Sum_probs=108.0
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-ccCce-EEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGR-CFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f~~~-~~~~~~~~~~~~~~~~~ 100 (658)
.|..-..++|.+..++.+..++.. ++.+.+.++|++|+||||+|+.+++.... .+... ..+. ... ....+.
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~---g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~-~~~---~~~~~~ 92 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDE---GKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN-ASD---DRGIDV 92 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHT---TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC-TTS---CCSHHH
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhc---CCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc-Ccc---cccHHH
Confidence 445557789999999999998876 33334889999999999999999998532 22211 1111 111 011111
Q ss_pred hHHHhhhcCCCCchhHHHH---hcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecchH-HHHhhcCCCceE
Q 047214 101 LSEKLEVAGANIPHFTKER---VRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDKR-VLEKFRGEKKIY 174 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~---l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~~-~~~~~~~~~~~~ 174 (658)
+.+.+. .+.+. ..+..-++|+|+++... ..+.++..+.......+++++|.... +.......+..+
T Consensus 93 ir~~i~--------~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 93 VRNQIK--------DFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHTHHH--------HHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHHHH--------HHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 111111 01100 12346899999986543 33444444332234566777765442 222233456789
Q ss_pred EcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchh
Q 047214 175 RVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVP 220 (658)
Q Consensus 175 ~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai 220 (658)
.+.+++.++..+.+...+......- .++..+.+++.++|.+--+
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~~i--~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKLKL--SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTCCB--CHHHHHHHHHHHTTCHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 9999999999988887663322211 2345788899999988643
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.35 E-value=6e-06 Score=82.04 Aligned_cols=199 Identities=15% Similarity=0.081 Sum_probs=107.8
Q ss_pred HHHHHHHhhhhcccCCCCCCCcccccchHhhHHHHhccc---------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 9 IVEDVLKNLEKATVATDSSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~l~~~---------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
+++.+.+.+-.. .++..-..++|.+..++.+.+++... .....+.+.|+|++|+|||++|+.++......
T Consensus 3 ~~~~~~~~~~~~-~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 3 LVQLILDEIVEG-GAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp HHHHHHTTTBCC-SSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHhccC-CCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 444454433322 24555678999999999999887421 00235678999999999999999999876433
Q ss_pred cCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-------------hhhhhhccc-
Q 047214 80 FEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-------------QLEGLIGEL- 145 (658)
Q Consensus 80 f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~l- 145 (658)
| +.+. ........ ........ ...+.......+.+|++|+++... ....++..+
T Consensus 82 ~---~~i~-~~~l~~~~-~~~~~~~~-------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 149 (297)
T 3b9p_A 82 F---LNIS-AASLTSKY-VGDGEKLV-------RALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFD 149 (297)
T ss_dssp E---EEEE-STTTSSSS-CSCHHHHH-------HHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHH
T ss_pred e---EEee-HHHHhhcc-cchHHHHH-------HHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHh
Confidence 2 2222 11111000 00000000 111222223567899999996541 111222221
Q ss_pred --CCC--CCCCEEEEEecchH-HHHhh-cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc-
Q 047214 146 --DQF--GPGSRIVVTTRDKR-VLEKF-RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL- 218 (658)
Q Consensus 146 --~~~--~~~~~ilvttR~~~-~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl- 218 (658)
... +.+..||.||..+. +.... ......+.+...+.++..+++...+...... ...+..+.+++.+.|.+-
T Consensus 150 ~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~la~~~~g~~~~ 227 (297)
T 3b9p_A 150 GLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP--LDTEALRRLAKITDGYSGS 227 (297)
T ss_dssp HCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC--SCHHHHHHHHHHTTTCCHH
T ss_pred cccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCHH
Confidence 111 13455677777542 11111 1223577788888888888887765332211 123456788999998875
Q ss_pred hhHH
Q 047214 219 VPKV 222 (658)
Q Consensus 219 ai~~ 222 (658)
++..
T Consensus 228 ~l~~ 231 (297)
T 3b9p_A 228 DLTA 231 (297)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 191
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.34 E-value=3.6e-06 Score=84.81 Aligned_cols=177 Identities=16% Similarity=0.097 Sum_probs=98.3
Q ss_pred CCCcc-cccch--HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHH
Q 047214 27 SNGLV-GLNSR--IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSE 103 (658)
Q Consensus 27 ~~~~v-GR~~~--~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 103 (658)
-+.|+ |.+.. ...+.+++.... ...+.+.|+|++|+||||+|+.+++.....-..++++. .... ...+..
T Consensus 10 f~~fv~g~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~~~-----~~~~~~ 82 (324)
T 1l8q_A 10 LENFIVGEGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-ADDF-----AQAMVE 82 (324)
T ss_dssp SSSCCCCTTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HHHH-----HHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HHHH-----HHHHHH
Confidence 34565 54433 334445444322 24567899999999999999999998644322344443 1111 111111
Q ss_pred HhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh----hhhhhcccCC-CCCCCEEEEEecchH---------HHHhhcC
Q 047214 104 KLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ----LEGLIGELDQ-FGPGSRIVVTTRDKR---------VLEKFRG 169 (658)
Q Consensus 104 ~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----~~~l~~~l~~-~~~~~~ilvttR~~~---------~~~~~~~ 169 (658)
.+.. .....+.+.+. +..+|++||++.... .+.+...+.. ...+..||+|+.+.. +...+ .
T Consensus 83 ~~~~---~~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~-~ 157 (324)
T 1l8q_A 83 HLKK---GTINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRF-E 157 (324)
T ss_dssp HHHH---TCHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHH-H
T ss_pred HHHc---CcHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcc-c
Confidence 1111 11233333333 367999999966441 2233322211 124567888876432 22222 2
Q ss_pred CCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcch
Q 047214 170 EKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLV 219 (658)
Q Consensus 170 ~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 219 (658)
....+.+.+ +.++..+++...+...... -.++..+.|++.+ |..-.
T Consensus 158 ~~~~i~l~~-~~~e~~~il~~~~~~~~~~--l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 158 GGILVEIEL-DNKTRFKIIKEKLKEFNLE--LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp TSEEEECCC-CHHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHC-SSHHH
T ss_pred CceEEEeCC-CHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHhC-CCHHH
Confidence 336799999 9999999998876432221 2244577888888 77643
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.32 E-value=3e-06 Score=87.72 Aligned_cols=182 Identities=14% Similarity=0.070 Sum_probs=100.8
Q ss_pred CCCCCCCcccccchHhhHHHHhccc---------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS 93 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~---------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 93 (658)
++..-..++|++..++.+..++... .....+.+.|+|++|+|||++|+.++......| +.+. .....
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~---~~v~-~~~l~ 185 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATF---FNIS-AASLT 185 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEE---EEEC-SCCC-
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcE---EEee-HHHhh
Confidence 3444567999999999999887321 002346789999999999999999998754322 2222 11111
Q ss_pred ccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-------------hhhhhhcccC---C-CCCCCEEEE
Q 047214 94 ETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-------------QLEGLIGELD---Q-FGPGSRIVV 156 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~l~---~-~~~~~~ilv 156 (658)
.. ........+ ...+...-...+.+|+||+++... ....++..+. . ......||.
T Consensus 186 ~~-~~g~~~~~~-------~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~ 257 (389)
T 3vfd_A 186 SK-YVGEGEKLV-------RALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257 (389)
T ss_dssp -------CHHHH-------HHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEE
T ss_pred cc-ccchHHHHH-------HHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEE
Confidence 00 000000000 111222223456799999996541 1122222221 1 123345666
Q ss_pred EecchH-HHHhhcCC-CceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 157 TTRDKR-VLEKFRGE-KKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 157 ttR~~~-~~~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
||.... +....... ...+.+...+.++..+++...+...... ...+....|++.+.|..-
T Consensus 258 atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~--l~~~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 258 ATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP--LTQKELAQLARMTDGYSG 319 (389)
T ss_dssp EESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC--SCHHHHHHHHHHTTTCCH
T ss_pred ecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHcCCCCH
Confidence 666542 22222233 3578899999999999998876443222 123356788888888654
No 193
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.31 E-value=8.6e-07 Score=77.64 Aligned_cols=113 Identities=18% Similarity=0.068 Sum_probs=67.3
Q ss_pred CcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhc
Q 047214 29 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVA 108 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 108 (658)
.++|++..++++.+.+..-. .....|.|+|++|+|||++|+.+++.....-...+ +. ........ ..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~-~~~~~~~~---~~------- 68 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YR-ELTPDNAP---QL------- 68 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EE-ECCTTTSS---CH-------
T ss_pred CceeCCHHHHHHHHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EE-CCCCCcch---hh-------
Confidence 58999999999999886433 33445789999999999999999987432211222 33 11111110 00
Q ss_pred CCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch
Q 047214 109 GANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK 161 (658)
Q Consensus 109 ~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~ 161 (658)
...+.. .....|++|+++... ....++..+.......++|.||...
T Consensus 69 ----~~~~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 69 ----NDFIAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ----HHHHHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ----hcHHHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 111111 133578999997765 3445555544344567888887754
No 194
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.28 E-value=1.9e-05 Score=79.15 Aligned_cols=181 Identities=13% Similarity=0.067 Sum_probs=101.8
Q ss_pred CCCCCCCcccccchHhhHHHHhcc---------cCCCCeEEEEEEcCCCCcHHHHHHHHHHhh-ccccCceEEEeccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCM---------DLSDTVQIVGIWGMGGIGKTTLATAIFNQF-SSEFEGRCFLSDIRKN 92 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~---------~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~-~~~f~~~~~~~~~~~~ 92 (658)
|...=..++|.+..++.|.+.+.. ......+.+.|+|++|+|||++|+.+++.. ...| +.+. ....
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l 82 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDL 82 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHH
Confidence 444557799999998888876631 001234678899999999999999999986 2222 2222 1111
Q ss_pred cccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-------------hhhhhhcccCC---CCCCCEEEE
Q 047214 93 SETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-------------QLEGLIGELDQ---FGPGSRIVV 156 (658)
Q Consensus 93 ~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~l~~---~~~~~~ilv 156 (658)
.. .........+ ...+...-..++.+|++|+++... ....++..+.. ...+..||.
T Consensus 83 ~~-~~~g~~~~~~-------~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~ 154 (322)
T 1xwi_A 83 VS-KWLGESEKLV-------KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 154 (322)
T ss_dssp CC-SSCCSCHHHH-------HHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEE
T ss_pred Hh-hhhhHHHHHH-------HHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEE
Confidence 10 0000000000 111222223567899999997651 12223332221 123445666
Q ss_pred EecchH-HHHhh-cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 157 TTRDKR-VLEKF-RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 157 ttR~~~-~~~~~-~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
||..+. +...+ ......+.+...+.++-.+++........... .......|++.+.|..
T Consensus 155 atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 155 ATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYS 215 (322)
T ss_dssp EESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCC
T ss_pred ecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCC
Confidence 665442 11111 13346788999999999999988764332111 2345788889888874
No 195
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.23 E-value=6.2e-06 Score=82.56 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=90.7
Q ss_pred CcccccchHhhHHHHhccc------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhH
Q 047214 29 GLVGLNSRIEQIKPFLCMD------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILS 102 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~~------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 102 (658)
.++|.+..++.+...+... .......+.++|++|+|||++|+.+++.....-...+.+. ....... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~-~~~~~~~---~~~~ 93 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID-MTEYMEK---HAVS 93 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE-GGGCCST---THHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee-ccccccc---ccHH
Confidence 5899999999998888742 1012358999999999999999999998644323334443 2222211 1122
Q ss_pred HHhhhc----CCCCchhHHHHhcC-cceEEEEeCCCCch--hhhhhhcccCCCC-----------CCCEEEEEecch---
Q 047214 103 EKLEVA----GANIPHFTKERVRR-MKVLIVLDDVNEVG--QLEGLIGELDQFG-----------PGSRIVVTTRDK--- 161 (658)
Q Consensus 103 ~~l~~~----~~~~~~~l~~~l~~-~~~LlvlDdv~~~~--~~~~l~~~l~~~~-----------~~~~ilvttR~~--- 161 (658)
..++.. +......+.+.+.. ...+++||+++... ....++..+.... .+..+|+||...
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~ 173 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPL 173 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHH
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHH
Confidence 222211 11112345555543 34799999997654 2444444332111 234477777651
Q ss_pred ------------HH--------H----HhhcC-CCceEEcCCCChHHHHHHHHHHh
Q 047214 162 ------------RV--------L----EKFRG-EKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 162 ------------~~--------~----~~~~~-~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
.+ . ..+.+ ....+.+.+++.++..+++...+
T Consensus 174 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l 229 (311)
T 4fcw_A 174 ILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQM 229 (311)
T ss_dssp HHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHT
T ss_pred HHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHH
Confidence 00 0 01112 23577788888888777776543
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=7.5e-06 Score=82.98 Aligned_cols=178 Identities=16% Similarity=0.175 Sum_probs=102.1
Q ss_pred CCCCCcccccchHhhHHHHhccc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccc
Q 047214 25 DSSNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSE 94 (658)
Q Consensus 25 ~~~~~~vGR~~~~~~l~~~l~~~----------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 94 (658)
+.=+.+.|-++.+++|.+.+.-. .-..++-+.++|++|+|||.+|++++......| +.+. .++..
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l~- 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVS-GAELV- 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEE-GGGGS-
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEE-hHHhh-
Confidence 33366888998888888766521 013456788999999999999999999866543 1222 11111
Q ss_pred cchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----------------hhhhhhcccCC--CCCCCEEEE
Q 047214 95 TGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----------------QLEGLIGELDQ--FGPGSRIVV 156 (658)
Q Consensus 95 ~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~l~~--~~~~~~ilv 156 (658)
....+.......+.+...-+..+++|++|+++..- ....++..+.. ...+..||.
T Consensus 220 -------sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIa 292 (405)
T 4b4t_J 220 -------QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIM 292 (405)
T ss_dssp -------CSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEE
T ss_pred -------ccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEe
Confidence 00111100000122233334568999999996531 12233333321 123445666
Q ss_pred EecchH-HHHhh---cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 157 TTRDKR-VLEKF---RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 157 ttR~~~-~~~~~---~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
||..+. +..++ ......+.+..-+.++-.++|+.+..+.....+. ..+.|++.+.|.-
T Consensus 293 ATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv---dl~~lA~~t~G~S 354 (405)
T 4b4t_J 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI---NLRKVAEKMNGCS 354 (405)
T ss_dssp EESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC---CHHHHHHHCCSCC
T ss_pred ccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC---CHHHHHHHCCCCC
Confidence 776553 22222 1345689999889988889998776433222111 1477888888854
No 197
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.21 E-value=1.7e-06 Score=87.99 Aligned_cols=18 Identities=11% Similarity=0.366 Sum_probs=12.0
Q ss_pred CCCCCCcccccceEEeccc
Q 047214 415 PDGLDYLPKNLRYLHWDKY 433 (658)
Q Consensus 415 p~~~~~l~~~L~~L~l~~~ 433 (658)
..++..++ +|+.|.+...
T Consensus 132 ~~s~~~l~-~L~~L~l~~~ 149 (362)
T 2ra8_A 132 VENKEKFA-HFEGLFWGDI 149 (362)
T ss_dssp HTTHHHHT-TCSEEEECCC
T ss_pred HHhhhhcc-hhhheeecCc
Confidence 44555666 8888887654
No 198
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.15 E-value=3.1e-06 Score=82.78 Aligned_cols=158 Identities=15% Similarity=0.196 Sum_probs=89.4
Q ss_pred CCCCCCCcccccchHhhHHHHhccc---------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD---------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS 93 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~---------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 93 (658)
+...-..++|.+..++.+.+.+..- .....+.+.|+|++|+|||++|+.+++.....|-. +. ....
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~- 80 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSF- 80 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTT-
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHH-
Confidence 3445578999999998888866510 00123347899999999999999999986543311 11 1100
Q ss_pred ccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-----------------hhhhhhcccCCC---CCCCE
Q 047214 94 ETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-----------------QLEGLIGELDQF---GPGSR 153 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-----------------~~~~l~~~l~~~---~~~~~ 153 (658)
.....+.........+.......+.+|++|+++... .+..++..+... .....
T Consensus 81 -------~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 153 (268)
T 2r62_A 81 -------IEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVI 153 (268)
T ss_dssp -------TTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCE
T ss_pred -------HHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEE
Confidence 000111111112334444444567899999996532 123333333211 12245
Q ss_pred EEEEecchHH-HHhhc---CCCceEEcCCCChHHHHHHHHHHh
Q 047214 154 IVVTTRDKRV-LEKFR---GEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 154 ilvttR~~~~-~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
||.||..... ..... .....+.+...+.++-.+++....
T Consensus 154 vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 154 VLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp EEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred EEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 6667765532 11221 123567888888888888887765
No 199
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.12 E-value=5.4e-06 Score=87.63 Aligned_cols=174 Identities=14% Similarity=0.186 Sum_probs=99.7
Q ss_pred CCCcccccchHhhHHHHhccc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccccc
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD-----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSET 95 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~-----------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 95 (658)
-..++|.+..++++.+++... . ...+-+.|+|++|+|||++|+.+++.....| +.+. .....
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn-~~~l~-- 275 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIM-- 275 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEE-HHHHH--
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEE-chHhh--
Confidence 356899999999998887632 2 3456688999999999999999998764322 2222 11111
Q ss_pred chhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-------------hhhhhhcccCC--CCCCCEEEEEecc
Q 047214 96 GGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-------------QLEGLIGELDQ--FGPGSRIVVTTRD 160 (658)
Q Consensus 96 ~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~l~~--~~~~~~ilvttR~ 160 (658)
....+.........+...-..++.+|+||+++... ....++..+.. ...+..||.||..
T Consensus 276 ------~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 276 ------SKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp ------TSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred ------hhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 00000000000233344445667899999983211 12333333321 1234566667765
Q ss_pred hH-HHHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCC
Q 047214 161 KR-VLEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGN 216 (658)
Q Consensus 161 ~~-~~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 216 (658)
.. +...+. .....+.+...+.++-.+++..+........+. ....+++.+.|.
T Consensus 350 ~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~---~l~~la~~t~g~ 406 (489)
T 3hu3_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV---DLEQVANETHGH 406 (489)
T ss_dssp GGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTC---CHHHHHHTCTTC
T ss_pred ccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchh---hHHHHHHHccCC
Confidence 53 222221 233478999999999999998876432211111 135667777664
No 200
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.11 E-value=1.3e-05 Score=79.98 Aligned_cols=153 Identities=12% Similarity=0.143 Sum_probs=83.9
Q ss_pred CCcccccchHhhHHHHhccc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccc
Q 047214 28 NGLVGLNSRIEQIKPFLCMD-----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETG 96 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~-----------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 96 (658)
+.++|++..++.+...+... .......+.|+|++|+|||++|+.+++..... .+.+. ........
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~---~~~i~-~~~~~~~~ 90 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP---FIKVE-ATKFTEVG 90 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC---EEEEE-GGGGSSCC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEc-chhcccCC
Confidence 35899999999998877540 00234568899999999999999999986432 22232 22211100
Q ss_pred hh-----hHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchh--------------hhhhhcccCCC---------
Q 047214 97 GG-----KILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ--------------LEGLIGELDQF--------- 148 (658)
Q Consensus 97 ~~-----~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~--------------~~~l~~~l~~~--------- 148 (658)
.. ..+.+...... ..+.. ...+.+|++|+++.... ...++..+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~ 164 (310)
T 1ofh_A 91 YVGKEVDSIIRDLTDSAG----GAIDA--VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMV 164 (310)
T ss_dssp SGGGSTTHHHHHHHHTTT----TCHHH--HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred ccCccHHHHHHHHHHHhh----HHHhh--ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccc
Confidence 00 11222111100 01111 12467999999976431 33343333211
Q ss_pred -CCCCEEEEEec----ch-HHHHhhcC-CCceEEcCCCChHHHHHHHHH
Q 047214 149 -GPGSRIVVTTR----DK-RVLEKFRG-EKKIYRVNGLEFEEAFEHFCN 190 (658)
Q Consensus 149 -~~~~~ilvttR----~~-~~~~~~~~-~~~~~~l~~L~~~~~~~l~~~ 190 (658)
..+..+|.|+. .+ .....+.+ ....+.+.+++.++..+++.+
T Consensus 165 ~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 165 KTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp ECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHS
T ss_pred cCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHh
Confidence 12455666642 21 11111112 235799999999999888874
No 201
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=1.1e-05 Score=83.25 Aligned_cols=179 Identities=17% Similarity=0.175 Sum_probs=102.0
Q ss_pred CCCCCCcccccchHhhHHHHhccc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc
Q 047214 24 TDSSNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS 93 (658)
Q Consensus 24 ~~~~~~~vGR~~~~~~l~~~l~~~----------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 93 (658)
.+.=..+.|-++.+++|.+.+.-. .-..++-|.+||++|+|||.+|++++....-.| +.+. .+...
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~-~s~l~ 252 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSP-ASGIV 252 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGTC
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hhhhc
Confidence 333466788998888888766521 013457788999999999999999999865443 1222 11111
Q ss_pred ccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----------------hhhhhhcccCC--CCCCCEEE
Q 047214 94 ETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----------------QLEGLIGELDQ--FGPGSRIV 155 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~l~~--~~~~~~il 155 (658)
. ..+..-...+ ...+...-...+++|++|+++..- .+..++..+.. ...+..||
T Consensus 253 s-k~~Gese~~i-------r~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI 324 (437)
T 4b4t_L 253 D-KYIGESARII-------REMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKII 324 (437)
T ss_dssp C-SSSSHHHHHH-------HHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEE
T ss_pred c-ccchHHHHHH-------HHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEE
Confidence 1 0000000000 122233334578999999996421 12234443321 12345677
Q ss_pred EEecchH-HHHhhcC---CCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 156 VTTRDKR-VLEKFRG---EKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 156 vttR~~~-~~~~~~~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
.||..+. +..++.. ....|.+..-+.++-.++|+.+..+.....+. ....+++.+.|.-
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~---dl~~lA~~t~G~s 387 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF---DFEAAVKMSDGFN 387 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC---CHHHHHHTCCSCC
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc---CHHHHHHhCCCCC
Confidence 7776654 2233312 24578888888888888888776443222111 1467788888754
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.08 E-value=9.6e-06 Score=92.68 Aligned_cols=153 Identities=14% Similarity=0.124 Sum_probs=83.2
Q ss_pred CCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc------CceEEEeccccccccchh-
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF------EGRCFLSDIRKNSETGGG- 98 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~- 98 (658)
.-..++||++++..+.+.+.. ...+.+.|+|++|+|||++|+.+++...... ...++.............
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~---~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~ 244 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLR---RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYR 244 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHC---SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----------
T ss_pred CCcccCCcHHHHHHHHHHHhc---CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccc
Confidence 345699999999999998875 3344578999999999999999999853211 222222212111100000
Q ss_pred hHhHHHhhhcCCCCchhHHHHh-c-CcceEEEEeCCCCch---------h-hhhhhcccCCCCCCCEEEEEecchHH---
Q 047214 99 KILSEKLEVAGANIPHFTKERV-R-RMKVLIVLDDVNEVG---------Q-LEGLIGELDQFGPGSRIVVTTRDKRV--- 163 (658)
Q Consensus 99 ~~l~~~l~~~~~~~~~~l~~~l-~-~~~~LlvlDdv~~~~---------~-~~~l~~~l~~~~~~~~ilvttR~~~~--- 163 (658)
...... ...+.+.+ . +++.+|++|+++... + ...+...+. ..+..+|.+|.....
T Consensus 245 g~~~~~--------l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~ 314 (854)
T 1qvr_A 245 GEFEER--------LKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREI 314 (854)
T ss_dssp -CHHHH--------HHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHH
T ss_pred hHHHHH--------HHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhh
Confidence 000000 11112222 2 357899999997653 1 112222222 234456666554432
Q ss_pred --HHhhcCCCceEEcCCCChHHHHHHHHHH
Q 047214 164 --LEKFRGEKKIYRVNGLEFEEAFEHFCNF 191 (658)
Q Consensus 164 --~~~~~~~~~~~~l~~L~~~~~~~l~~~~ 191 (658)
...+......+.+++.+.++..+++...
T Consensus 315 ~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 315 EKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp TTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred ccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 1222344557999999999999988654
No 203
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=2.5e-05 Score=80.25 Aligned_cols=178 Identities=14% Similarity=0.141 Sum_probs=100.4
Q ss_pred CCCCCcccccchHhhHHHHhcc---------c-CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccc
Q 047214 25 DSSNGLVGLNSRIEQIKPFLCM---------D-LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSE 94 (658)
Q Consensus 25 ~~~~~~vGR~~~~~~l~~~l~~---------~-~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 94 (658)
+.=..+.|-++.+++|.+.+.- . .-..++-|.++|++|+|||.+|++++......| +.+. .+....
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs-~s~L~s 281 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVI-GSELVQ 281 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGGCC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEE-hHHhhc
Confidence 3335788999888888876531 0 014567788999999999999999999866543 1222 111110
Q ss_pred cchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----------------hhhhhhcccCCC--CCCCEEEE
Q 047214 95 TGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----------------QLEGLIGELDQF--GPGSRIVV 156 (658)
Q Consensus 95 ~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~l~~~--~~~~~ilv 156 (658)
..+..-...+ ...+...-...+++|++|+++..- ....++..+... ..+..||.
T Consensus 282 -k~vGesek~i-------r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIa 353 (467)
T 4b4t_H 282 -KYVGEGARMV-------RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMF 353 (467)
T ss_dssp -CSSSHHHHHH-------HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEE
T ss_pred -ccCCHHHHHH-------HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEe
Confidence 0000000000 122333334668999999996431 112223332211 23445566
Q ss_pred EecchH-HHHhh---cCCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 157 TTRDKR-VLEKF---RGEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 157 ttR~~~-~~~~~---~~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
||..+. +..++ ......+.+..-+.++-.++|+.+..+-..... . ..+.|++.|.|.-
T Consensus 354 ATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~d-v--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 354 ATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERG-I--RWELISRLCPNST 415 (467)
T ss_dssp ECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSS-C--CHHHHHHHCCSCC
T ss_pred CCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCC-C--CHHHHHHHCCCCC
Confidence 775543 22222 134568888888888888999877643322211 1 1467888888853
No 204
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.07 E-value=0.00016 Score=74.86 Aligned_cols=249 Identities=13% Similarity=0.147 Sum_probs=128.9
Q ss_pred ccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceec-CCCCCCcccccceEEecccCCCCCCCCC--CCCCccEEEe
Q 047214 376 NLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLL-PDGLDYLPKNLRYLHWDKYPLRTLPSNF--KPENLVELNL 452 (658)
Q Consensus 376 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-p~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L 452 (658)
.+...+|.++.+|+.+.+..+ + ..+ ...+.+.. +|+.+.+.. .++.++... ++.+|+.+.+
T Consensus 61 sIg~~AF~~c~~L~~i~lp~~-i-------------~~I~~~aF~~c~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~i~~ 124 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPST-V-------------REIGEFAFENCS-KLEIINIPD-SVKMIGRCTFSGCYALKSILL 124 (394)
T ss_dssp EECTTTTTTCTTEEEEECCTT-C-------------CEECTTTTTTCT-TCCEECCCT-TCCEECTTTTTTCTTCCCCCC
T ss_pred EhHHHHhhCCCCceEEEeCCC-c-------------cCcchhHhhCCC-CCcEEEeCC-CceEccchhhcccccchhhcc
Confidence 456677888888888888644 3 123 33455555 777777754 355555443 5666665554
Q ss_pred cCCCccccc-----------------------ccccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCccccc
Q 047214 453 HFSKVEQLW-----------------------EGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNFACVP 506 (658)
Q Consensus 453 ~~~~i~~l~-----------------------~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~ 506 (658)
..+ +..+. ..+..+.+|+.+.+.++ +..++ +.++++|+.+.+..+ +..++
T Consensus 125 p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~-~~~I~ 200 (394)
T 4fs7_A 125 PLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN-LKIIR 200 (394)
T ss_dssp CTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEEC
T ss_pred cCc-eeeecceeeecccccccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC-ceEeC
Confidence 432 11111 12445566666666543 22222 566666666666542 33333
Q ss_pred -ccccCCCCCCEEeccCCCCCCcCCC-CCCCCCCcEEeccCCCCcccc----CcccCCccEEEccccccc----------
Q 047214 507 -SSIQNFKYLSALSFEGCKSLRSFPS-NFRFVCPVTINFSSCVNLIEF----PQISGKITRLYLGQSAIE---------- 570 (658)
Q Consensus 507 -~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~l~~~----~~~~~~L~~L~l~~~~i~---------- 570 (658)
..+.++..|+.+.+.++ ...+.. .+....|+.+.+... +..+ .....+++.+.+..+...
T Consensus 201 ~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~ 276 (394)
T 4fs7_A 201 DYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCS 276 (394)
T ss_dssp TTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCT
T ss_pred chhhccccccceeecCCC--ceEeehhhcccCCCceEEECCC--ceecccccccccccceeEEcCCCcceeecccccccc
Confidence 23555556655555432 111111 123345555544321 1111 112233333333222111
Q ss_pred ----------cccc-cccCCCCCCEEecCCCccchhh-hhhhcCCCCCcEEeccCCcCCccCC-----CCCCcccEEecc
Q 047214 571 ----------EVPS-SIECLTDLEVLDLRDCKRLKRI-STRFCKLRSLVDLFLHGCLNLQSLP-----ALPLCLKSLDLR 633 (658)
Q Consensus 571 ----------~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~-----~l~~~L~~L~l~ 633 (658)
.++. .+..+.+|+.+.+..+ +..+ ...|.++.+|+.+.+.+. ++.++ ++.+ |+.+++.
T Consensus 277 ~l~~~~~~~~~i~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~-L~~i~lp 351 (394)
T 4fs7_A 277 GLKKVIYGSVIVPEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTS-LSNINFP 351 (394)
T ss_dssp TCCEEEECSSEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTT-CCEECCC
T ss_pred ccceeccCceeeccccccccccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCC-CCEEEEC
Confidence 1111 2556777777777643 3333 335778888998888642 55554 4677 8888886
Q ss_pred CCccccccCC----CCCCccEEeccC
Q 047214 634 DCKMLQSLPE----LPSCLEALDLTS 655 (658)
Q Consensus 634 ~~~~l~~i~~----~~~~L~~L~l~~ 655 (658)
.+ ++.++. ...+|+.+++..
T Consensus 352 ~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 352 LS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred cc--ccEehHHHhhCCCCCCEEEECC
Confidence 54 556654 345688887754
No 205
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=3.3e-06 Score=75.37 Aligned_cols=84 Identities=11% Similarity=0.134 Sum_probs=57.4
Q ss_pred CCccEEEecCCCcccc-cccccCCCCccEEeccCCCcccccC---CCcC----CCccEEEeec-CCccccc-ccccCCCC
Q 047214 445 ENLVELNLHFSKVEQL-WEGKKEAFKLKSINLSHCRHFIDMS---YPSA----PNLETYLLDY-TNFACVP-SSIQNFKY 514 (658)
Q Consensus 445 ~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~---l~~l----~~L~~L~l~~-~~~~~~~-~~~~~l~~ 514 (658)
.+|+.||+++|.|+.. ...+..+++|++|+|++|..+++.. ++.+ ++|++|++++ .++++-. ..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4688888888877632 2346788899999999998777665 5543 3678888877 3454321 24566777
Q ss_pred CCEEeccCCCCCCc
Q 047214 515 LSALSFEGCKSLRS 528 (658)
Q Consensus 515 L~~L~l~~~~~l~~ 528 (658)
|++|++++|+.+++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 88888877766654
No 206
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.05 E-value=4.2e-05 Score=86.48 Aligned_cols=154 Identities=14% Similarity=0.170 Sum_probs=88.6
Q ss_pred CCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc------cCceEEEeccccccccchh-h
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE------FEGRCFLSDIRKNSETGGG-K 99 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~------f~~~~~~~~~~~~~~~~~~-~ 99 (658)
-..++||+.+++.+.+.+... ....+.|+|++|+|||++|+.+++.+... ....++............. .
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~---~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g 261 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR---RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG 261 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS---SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSS
T ss_pred CCCccCCHHHHHHHHHHHhcc---CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccc
Confidence 356899999999999998753 34567899999999999999999985321 1233332211111100000 0
Q ss_pred HhHHHhhhcCCCCchhHHHHh-cCcceEEEEeCCCCch----------hhhhhhcccCCCCCCCEEEEEecchHHH----
Q 047214 100 ILSEKLEVAGANIPHFTKERV-RRMKVLIVLDDVNEVG----------QLEGLIGELDQFGPGSRIVVTTRDKRVL---- 164 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~----------~~~~l~~~l~~~~~~~~ilvttR~~~~~---- 164 (658)
...+. ...+.+.+ +.++.+|++|+++... +...++..+.. ..+..+|.+|......
T Consensus 262 ~~e~~--------l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~ 332 (758)
T 1r6b_X 262 DFEKR--------FKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFE 332 (758)
T ss_dssp CHHHH--------HHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCC
T ss_pred hHHHH--------HHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhh
Confidence 00000 11122222 3357899999997651 22223333222 2345667766654322
Q ss_pred --HhhcCCCceEEcCCCChHHHHHHHHHHh
Q 047214 165 --EKFRGEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 165 --~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
..+......+.+...+.++..+++....
T Consensus 333 ~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 333 KDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred cCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 1122334578999999999988887643
No 207
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.05 E-value=1.3e-05 Score=90.57 Aligned_cols=149 Identities=14% Similarity=0.156 Sum_probs=85.1
Q ss_pred CCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc------CceEEEeccccccccchhh
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF------EGRCFLSDIRKNSETGGGK 99 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~ 99 (658)
.-+.++||+.+++.+...+... ....+.++|++|+|||++|+.+++.+.... ...++.... .
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~---~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--g------- 245 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRR---TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--G------- 245 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS---SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC------------
T ss_pred CCCCccCchHHHHHHHHHHhCC---CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--c-------
Confidence 3467999999999999998752 344578999999999999999999853211 112221111 0
Q ss_pred HhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCchhhhhhhcccCCCCCCCEEEEEecchH------HHHhhcCCCce
Q 047214 100 ILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKR------VLEKFRGEKKI 173 (658)
Q Consensus 100 ~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~------~~~~~~~~~~~ 173 (658)
....+.........+.+.-..++.+|++|. ..+....++..+. ....++|.+|.... ...........
T Consensus 246 --~~~~G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~ 319 (758)
T 3pxi_A 246 --TKYRGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQP 319 (758)
T ss_dssp ---------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE
T ss_pred --ccccchHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcE
Confidence 000011111112333334446789999992 2222233333332 23456776665544 11222234568
Q ss_pred EEcCCCChHHHHHHHHHHh
Q 047214 174 YRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 174 ~~l~~L~~~~~~~l~~~~~ 192 (658)
+.+...+.++..+++....
T Consensus 320 i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 320 IQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp EECCCCCHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHHHHHH
Confidence 9999999999999998654
No 208
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.00 E-value=1.4e-05 Score=77.94 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=36.4
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..++|++..+..+.+.+.... .....+.|+|.+|+|||++|+.+++...
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~-~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA-PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT-TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHh-CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 458999999998887776432 2345688999999999999999998754
No 209
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.99 E-value=9.3e-06 Score=75.52 Aligned_cols=126 Identities=15% Similarity=0.146 Sum_probs=67.2
Q ss_pred CCCCcccccc----hHhhHHHHhcccCCC-CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 26 SSNGLVGLNS----RIEQIKPFLCMDLSD-TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 26 ~~~~~vGR~~----~~~~l~~~l~~~~~~-~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
.-+.|++.+. .++.+.+++...... ..+.+.|+|++|+|||+||+.+++........++++. ... .
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~-~~~--------~ 93 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY-VPE--------L 93 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE-HHH--------H
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-hHH--------H
Confidence 4456776553 445556666543211 2268899999999999999999998765545555554 211 1
Q ss_pred hHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCC--chhhh--hhhc-ccCCC-CCCCEEEEEecch
Q 047214 101 LSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNE--VGQLE--GLIG-ELDQF-GPGSRIVVTTRDK 161 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~--~~~~~--~l~~-~l~~~-~~~~~ilvttR~~ 161 (658)
+..+...........+.+.+... -+|||||++. ...|. .++. .+... ..+.++|+||...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHHHhccchHHHHHHHhcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 11111111111123333444333 4999999954 33322 1222 11111 2456788888754
No 210
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=1.2e-05 Score=82.92 Aligned_cols=176 Identities=15% Similarity=0.131 Sum_probs=100.1
Q ss_pred CCCCCCCcccccchHhhHHHHhccc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKN 92 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~----------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~ 92 (658)
|...=..+.|-++.+++|.+.+... .-..++-|.+||++|+|||.+|++++......| +.+. .+..
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF---LKLA-APQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE---EEEe-hhhh
Confidence 4444467889999888888765310 113467788999999999999999999865443 1122 1111
Q ss_pred cccchh----hHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCc-------h---------hhhhhhcccCCC--CC
Q 047214 93 SETGGG----KILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEV-------G---------QLEGLIGELDQF--GP 150 (658)
Q Consensus 93 ~~~~~~----~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~-------~---------~~~~l~~~l~~~--~~ 150 (658)
.. ..+ ..+. ..+...-...+++|++|+++.. . ....++..+... ..
T Consensus 252 ~~-~~vGese~~ir-----------~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 252 VQ-MYIGEGAKLVR-----------DAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp CS-SCSSHHHHHHH-----------HHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred hh-cccchHHHHHH-----------HHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 10 000 1111 1222223356899999998432 0 122344443322 23
Q ss_pred CCEEEEEecchH-HHHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 151 GSRIVVTTRDKR-VLEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 151 ~~~ilvttR~~~-~~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
+..||.||..+. +..++. .....+.+..-+.++-.++|+.+..+.....+. ..+.|++.+.|.-
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv---dl~~lA~~t~G~s 387 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI---NWQELARSTDEFN 387 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC---CHHHHHHHCSSCC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCCC
Confidence 445666776553 223321 234578888888888888887665332221111 1467788888753
No 211
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=3.5e-05 Score=79.31 Aligned_cols=174 Identities=16% Similarity=0.172 Sum_probs=95.4
Q ss_pred CCCCCcccccchHhhHHHHhccc----------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccc
Q 047214 25 DSSNGLVGLNSRIEQIKPFLCMD----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSE 94 (658)
Q Consensus 25 ~~~~~~vGR~~~~~~l~~~l~~~----------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 94 (658)
+.=..+.|-++.+++|.+.+... .-..++-+.++|++|+|||++|++++....-.| +.+. .++...
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~---~~v~-~~~l~~ 244 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF---IRVN-GSEFVH 244 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE---EEEE-GGGTCC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---EEEe-cchhhc
Confidence 34467889998888888766420 013456788999999999999999999865443 2222 211111
Q ss_pred cchh----hHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----------------hhhhhhcccCC--CCCCC
Q 047214 95 TGGG----KILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----------------QLEGLIGELDQ--FGPGS 152 (658)
Q Consensus 95 ~~~~----~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~l~~--~~~~~ 152 (658)
..+ ..+. +.+...-...++++++|+++... ....++..+.. ...+.
T Consensus 245 -~~~Ge~e~~ir-----------~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v 312 (428)
T 4b4t_K 245 -KYLGEGPRMVR-----------DVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNV 312 (428)
T ss_dssp -SSCSHHHHHHH-----------HHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSE
T ss_pred -cccchhHHHHH-----------HHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCE
Confidence 000 1222 22223334568999999984210 12233333321 23445
Q ss_pred EEEEEecchH-HHHhhcC---CCceEEcCCCCh-HHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 153 RIVVTTRDKR-VLEKFRG---EKKIYRVNGLEF-EEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 153 ~ilvttR~~~-~~~~~~~---~~~~~~l~~L~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
.||.||..+. +..++.. ....|.+.++.. ++-.++|..+..+.....+. ..+.+++.+.|.-
T Consensus 313 ~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~---dl~~lA~~t~G~s 379 (428)
T 4b4t_K 313 KVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA---DLDSLIIRNDSLS 379 (428)
T ss_dssp EEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC---CHHHHHHHTTTCC
T ss_pred EEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc---CHHHHHHHCCCCC
Confidence 6677776553 2222212 234677866644 44456666655332221111 1467788888753
No 212
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.97 E-value=9.4e-05 Score=74.56 Aligned_cols=256 Identities=16% Similarity=0.135 Sum_probs=132.5
Q ss_pred CCCCCCCcccccchHhhHHHHhccc--CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhH
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMD--LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKI 100 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~--~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 100 (658)
.|..-..++|.+..++.+...+... .+.....++|+|++|+||||||+.++......|. ... ... .. . ...
T Consensus 20 r~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~s-g~~-~~-~-~~~ 92 (334)
T 1in4_A 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTS-GPV-LV-K-QGD 92 (334)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEE-TTT-CC-S-HHH
T ss_pred CCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEe-chH-hc-C-HHH
Confidence 3445577999998888888777532 1123467899999999999999999998643321 111 000 00 0 000
Q ss_pred hHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCC--------C----------CCCEEEE-Eec
Q 047214 101 LSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQF--------G----------PGSRIVV-TTR 159 (658)
Q Consensus 101 l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~--------~----------~~~~ilv-ttR 159 (658)
+.. +...+ .++.++++|+++... ..+.+....... + +...++- |++
T Consensus 93 l~~------------~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~ 159 (334)
T 1in4_A 93 MAA------------ILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR 159 (334)
T ss_dssp HHH------------HHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESC
T ss_pred HHH------------HHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCC
Confidence 111 11111 234578889886542 222222111100 0 1122333 344
Q ss_pred chHHHHhhcCC-CceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHHhhcccc------cc--
Q 047214 160 DKRVLEKFRGE-KKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKVLGSSLC------LK-- 230 (658)
Q Consensus 160 ~~~~~~~~~~~-~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~~a~~l~------~~-- 230 (658)
...+...+... ...+.+++.+.++-.+++.+.+..... ....+.+..|++.+.|.|-.+.-+...+. +.
T Consensus 160 ~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~ 237 (334)
T 1in4_A 160 SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADR 237 (334)
T ss_dssp GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSS
T ss_pred cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 33332222222 346889999999999999876532222 23345688999999999965433322211 00
Q ss_pred -cHHHHHHHHHHHhhcCCcchhhHHhhhhhhccCCChhhhchhceeee-c-CCCCCHHHHHHHhccccc---cchH-Hhh
Q 047214 231 -RKSHWENLLHDLNRICESDIHDIYKKLKITFDELTPRVQSIFLDIAC-F-FEGEDKDFVARILDDSES---DGLD-VLI 303 (658)
Q Consensus 231 -~~~~w~~~~~~l~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~~a~-f-p~~~~~~~l~~~~~~~~~---~~l~-~L~ 303 (658)
+......++..+ ......++...+..+..++- | ........+...+.++.. ...+ .|.
T Consensus 238 It~~~v~~al~~~---------------~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~ 302 (334)
T 1in4_A 238 INTDIVLKTMEVL---------------NIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLL 302 (334)
T ss_dssp BCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHH
T ss_pred cCHHHHHHHHHHh---------------CCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHH
Confidence 222222222221 11112344444444433322 2 223556666666665321 2222 788
Q ss_pred hccCceee-CCeE
Q 047214 304 DKSLISIS-GNCL 315 (658)
Q Consensus 304 ~~~ll~~~-~~~~ 315 (658)
..++++.. .+++
T Consensus 303 ~~g~i~~~~~gr~ 315 (334)
T 1in4_A 303 QAGFLARTPRGRI 315 (334)
T ss_dssp HTTSEEEETTEEE
T ss_pred HcCCeecccccHH
Confidence 89999887 4444
No 213
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.96 E-value=1.9e-05 Score=78.40 Aligned_cols=48 Identities=21% Similarity=0.257 Sum_probs=39.0
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+.++|++..+.++.+.+.... .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-PSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-STTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHh-CCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 468999999999998887533 334567899999999999999999864
No 214
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.95 E-value=7.4e-05 Score=72.30 Aligned_cols=183 Identities=15% Similarity=0.119 Sum_probs=95.3
Q ss_pred CCCCCCCcccccchHhhHHHHhcc---cC------CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCM---DL------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS 93 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~---~~------~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 93 (658)
++..-..++|.+..++++.+.+.. .. ....+-+.|+|++|+||||+|+.++......| +.+. .....
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~ 82 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFV 82 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSST
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHH
Confidence 344456799999888877765431 10 01234588999999999999999998764332 2222 11110
Q ss_pred ccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----------------hhhhhhcccCC--CCCCCEEE
Q 047214 94 ETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----------------QLEGLIGELDQ--FGPGSRIV 155 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~l~~--~~~~~~il 155 (658)
.. ........+ ...+.......+.++++|+++... ....++..+.. ...+..||
T Consensus 83 ~~-~~~~~~~~~-------~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI 154 (257)
T 1lv7_A 83 EM-FVGVGASRV-------RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 154 (257)
T ss_dssp TS-CCCCCHHHH-------HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEE
T ss_pred HH-hhhhhHHHH-------HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEE
Confidence 00 000000000 122223333456799999983221 12223332221 12345667
Q ss_pred EEecchH-HHHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCC-Ccchh
Q 047214 156 VTTRDKR-VLEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADG-NPLVP 220 (658)
Q Consensus 156 vttR~~~-~~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plai 220 (658)
.||.... +..... .....+.+...+.++-.+++...........+. ....+++.+.| .+--+
T Consensus 155 ~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~---~~~~la~~~~G~~~~dl 221 (257)
T 1lv7_A 155 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI---DAAIIARGTPGFSGADL 221 (257)
T ss_dssp EEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCCHHHH
T ss_pred EeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc---cHHHHHHHcCCCCHHHH
Confidence 7776553 222221 124577888888888888887765332111111 13456666666 44333
No 215
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.95 E-value=1.2e-05 Score=73.15 Aligned_cols=119 Identities=17% Similarity=0.111 Sum_probs=62.4
Q ss_pred ccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cccCceEEEeccccccccchhhHhHHHhhhcCCC
Q 047214 33 LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEFEGRCFLSDIRKNSETGGGKILSEKLEVAGAN 111 (658)
Q Consensus 33 R~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 111 (658)
+...++.+.+++..-.......+.|+|++|+||||||+.++.... ..-..++++. ..+. +..+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~-~~~~-----~~~~~~~~~~~~-- 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD-TKDL-----IFRLKHLMDEGK-- 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE-HHHH-----HHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE-HHHH-----HHHHHHHhcCch--
Confidence 344445555555432213356899999999999999999999864 2222233333 1111 122222222111
Q ss_pred CchhHHHHhcCcceEEEEeCCCC--chhhh--hhhcccCCC-CCCCEEEEEecch
Q 047214 112 IPHFTKERVRRMKVLIVLDDVNE--VGQLE--GLIGELDQF-GPGSRIVVTTRDK 161 (658)
Q Consensus 112 ~~~~l~~~l~~~~~LlvlDdv~~--~~~~~--~l~~~l~~~-~~~~~ilvttR~~ 161 (658)
...+.+.+. +.-+|||||++. ...|. .+...+... ..+..+|+||...
T Consensus 91 -~~~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 -DTKFLKTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp -CSHHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred -HHHHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 113333333 457899999973 23322 222222111 2567889988753
No 216
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.94 E-value=2.3e-05 Score=79.66 Aligned_cols=178 Identities=17% Similarity=0.149 Sum_probs=98.3
Q ss_pred CCCCCcccccchHhhHHHHhcc---c-------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccc
Q 047214 25 DSSNGLVGLNSRIEQIKPFLCM---D-------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSE 94 (658)
Q Consensus 25 ~~~~~~vGR~~~~~~l~~~l~~---~-------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 94 (658)
+.=..+.|-++.+++|.+.+.- . .-..++-|.++|++|+|||.+|++++......|- .+. .++...
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi---~v~-~s~l~s 254 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL---RIV-GSELIQ 254 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE---EEE-SGGGCC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE---EEE-HHHhhh
Confidence 3346677888888888776542 0 0134567889999999999999999998664431 121 111110
Q ss_pred cchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----------------hhhhhhcccCC--CCCCCEEEE
Q 047214 95 TGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----------------QLEGLIGELDQ--FGPGSRIVV 156 (658)
Q Consensus 95 ~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~l~~--~~~~~~ilv 156 (658)
..+..-...+ ...+...-+..+++|++|+++... ....++..+.. ...+..||.
T Consensus 255 -k~vGesek~i-------r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIa 326 (437)
T 4b4t_I 255 -KYLGDGPRLC-------RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIM 326 (437)
T ss_dssp -SSSSHHHHHH-------HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEE
T ss_pred -ccCchHHHHH-------HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEE
Confidence 0000000000 122222334568999999986421 12223333211 123445666
Q ss_pred EecchH-HHHhhcC---CCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 157 TTRDKR-VLEKFRG---EKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 157 ttR~~~-~~~~~~~---~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
||..+. +..++.. ....|.+..-+.++-.++|..+..+.....+. ..+.|++.+.|.-
T Consensus 327 ATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv---dl~~LA~~T~GfS 388 (437)
T 4b4t_I 327 ATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV---NLETLVTTKDDLS 388 (437)
T ss_dssp EESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC---CHHHHHHHCCSCC
T ss_pred eCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC---CHHHHHHhCCCCC
Confidence 776554 3333322 24467888888888888888776433222111 1467788888753
No 217
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.94 E-value=4.9e-05 Score=75.14 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=88.9
Q ss_pred cccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh---ccccCceEEEeccccccccchhhHhHHHhhhc
Q 047214 32 GLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF---SSEFEGRCFLSDIRKNSETGGGKILSEKLEVA 108 (658)
Q Consensus 32 GR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~---~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 108 (658)
|-++.++.+.+.+.. ++.+...++|+.|+|||++|..+++.. .........+.... ....++.+.+++...
T Consensus 1 g~~~~~~~L~~~i~~---~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~~~~id~ir~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEK---SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---ENIGIDDIRTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHT---CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---SCBCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHC---CCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---CCCCHHHHHHHHHHH
Confidence 456667788888875 336789999999999999999998852 12233344443111 011222233322211
Q ss_pred CCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEecch-HHHHhhcCCCceEEcCCCChHHHH
Q 047214 109 GANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTTRDK-RVLEKFRGEKKIYRVNGLEFEEAF 185 (658)
Q Consensus 109 ~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvttR~~-~~~~~~~~~~~~~~l~~L~~~~~~ 185 (658)
... -..+++-++|+|+++... ..+.++..+-.-.+.+.+|++|.++ .+....... .+.+.+++.++..
T Consensus 75 ~~~-------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~ 145 (305)
T 2gno_A 75 NYS-------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFR 145 (305)
T ss_dssp TSC-------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHH
T ss_pred hhc-------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHH
Confidence 000 012456799999998754 3556666654434566777776554 344444344 8999999999999
Q ss_pred HHHHHHh
Q 047214 186 EHFCNFA 192 (658)
Q Consensus 186 ~l~~~~~ 192 (658)
+.+.+..
T Consensus 146 ~~L~~~~ 152 (305)
T 2gno_A 146 DLVKEKI 152 (305)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988775
No 218
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.91 E-value=0.00031 Score=72.65 Aligned_cols=73 Identities=22% Similarity=0.244 Sum_probs=41.7
Q ss_pred cCCccEEEcccccccccccc-ccCCCCCCEEecCCCccchhh-hhhhcCCCCCcEEeccCCcCCccCC-----CCCCccc
Q 047214 556 SGKITRLYLGQSAIEEVPSS-IECLTDLEVLDLRDCKRLKRI-STRFCKLRSLVDLFLHGCLNLQSLP-----ALPLCLK 628 (658)
Q Consensus 556 ~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~-----~l~~~L~ 628 (658)
..+|+.+.+..+ ++.++.. |.++++|+.+++..+ +..+ ...|.+|.+|+.+.+..+ ++.++ ++++ |+
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~-L~ 369 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCIN-LK 369 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTT-CC
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCC-CC
Confidence 455666665433 4445443 666777777777543 3333 335667777777777543 44443 4566 66
Q ss_pred EEeccC
Q 047214 629 SLDLRD 634 (658)
Q Consensus 629 ~L~l~~ 634 (658)
.+++..
T Consensus 370 ~i~lp~ 375 (394)
T 4fs7_A 370 KVELPK 375 (394)
T ss_dssp EEEEEG
T ss_pred EEEECC
Confidence 666653
No 219
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.91 E-value=0.0016 Score=67.20 Aligned_cols=74 Identities=16% Similarity=0.349 Sum_probs=40.5
Q ss_pred CCccEEEcccccccccccc-ccCCCCCCEEecCCCccchhh-hhhhcCCCCCcEEeccCCcCCccCC-----CCCCcccE
Q 047214 557 GKITRLYLGQSAIEEVPSS-IECLTDLEVLDLRDCKRLKRI-STRFCKLRSLVDLFLHGCLNLQSLP-----ALPLCLKS 629 (658)
Q Consensus 557 ~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~l~-----~l~~~L~~ 629 (658)
.+|+.+.+. +.+..++.. |.++.+|+.+.|..+ +..+ ...|.+|.+|+.+.+... ++.++ ++++ |+.
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~-L~~ 361 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTA-LNN 361 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTT-CCE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCC-CCE
Confidence 445555553 334444443 566667777776543 2233 234666777777776432 44443 4566 777
Q ss_pred EeccCCc
Q 047214 630 LDLRDCK 636 (658)
Q Consensus 630 L~l~~~~ 636 (658)
+++.++.
T Consensus 362 i~~~~~~ 368 (394)
T 4gt6_A 362 IEYSGSR 368 (394)
T ss_dssp EEESSCH
T ss_pred EEECCce
Confidence 7766553
No 220
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.89 E-value=3.5e-05 Score=86.99 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=87.1
Q ss_pred CCcccccchHhhHHHHhcccC------CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHh
Q 047214 28 NGLVGLNSRIEQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~------~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 101 (658)
..++|.+..++.+...+.... ......+.++|++|+|||++|+.+++.....-...+.+. ++.........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 458999999988888776321 012347999999999999999999998643333344444 32222111000
Q ss_pred HHHhhhcCCCCchhHHHHhc-CcceEEEEeCCCCch--hhhhhhcccCC-----------CCCCCEEEEEecch-----H
Q 047214 102 SEKLEVAGANIPHFTKERVR-RMKVLIVLDDVNEVG--QLEGLIGELDQ-----------FGPGSRIVVTTRDK-----R 162 (658)
Q Consensus 102 ~~~l~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~--~~~~l~~~l~~-----------~~~~~~ilvttR~~-----~ 162 (658)
...+.+.++ ....+|+||+++... ....++..+.. ...+.+||+||... .
T Consensus 568 -----------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~ 636 (758)
T 3pxi_A 568 -----------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDK 636 (758)
T ss_dssp --------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHH
T ss_pred -----------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHH
Confidence 111112222 234599999997654 23444433321 12356888888731 1
Q ss_pred H----H----HhhcCC-CceEEcCCCChHHHHHHHHHHh
Q 047214 163 V----L----EKFRGE-KKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 163 ~----~----~~~~~~-~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
. . ....+. ..++.+.+++.++..+++...+
T Consensus 637 ~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 637 VMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp HHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 1 111122 3689999999999888876654
No 221
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.88 E-value=4.5e-05 Score=79.92 Aligned_cols=177 Identities=17% Similarity=0.175 Sum_probs=98.9
Q ss_pred CCCCcccccchHhhHHHHhcccC--------C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccc
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDL--------S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETG 96 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~--------~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~ 96 (658)
.-..++|.++.++++.+.+..-. + .-++-+.|+|++|+|||++|+.++......| +.+. ..+....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~- 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVEL- 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTC-
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHH-
Confidence 34578999988877777554210 0 1234588999999999999999999764333 2222 1111100
Q ss_pred hhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----------------hhhhhhcccCC--CCCCCEEEEEe
Q 047214 97 GGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----------------QLEGLIGELDQ--FGPGSRIVVTT 158 (658)
Q Consensus 97 ~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~l~~--~~~~~~ilvtt 158 (658)
..+.........+.......+.+|+||+++... ....++..+.. ...+..||.||
T Consensus 89 -------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 89 -------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp -------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred -------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEec
Confidence 000000000233444445678999999995521 13334333211 12355677777
Q ss_pred cchHHH-Hhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 159 RDKRVL-EKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 159 R~~~~~-~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
..+... .... .....+.+...+.++-.+++..+........+. ....+++.+.|..
T Consensus 162 n~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 162 NRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 766432 2221 223488888888888888887765432211111 1455788888877
No 222
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=1e-05 Score=72.21 Aligned_cols=82 Identities=24% Similarity=0.335 Sum_probs=57.1
Q ss_pred CccEEEcccccccccc-ccccCCCCCCEEecCCCccchhh-hhhhcCC----CCCcEEeccCCcCCcc-----CCCCCCc
Q 047214 558 KITRLYLGQSAIEEVP-SSIECLTDLEVLDLRDCKRLKRI-STRFCKL----RSLVDLFLHGCLNLQS-----LPALPLC 626 (658)
Q Consensus 558 ~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l----~~L~~L~l~~~~~l~~-----l~~l~~~ 626 (658)
+|+.|++++|.|+... ..+.++++|++|+|++|..+.+. -..++.+ ++|++|+|++|+.++. +..+|+
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~- 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN- 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT-
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC-
Confidence 3455555555555322 23678999999999999765432 2334443 5799999999987754 447888
Q ss_pred ccEEeccCCccccc
Q 047214 627 LKSLDLRDCKMLQS 640 (658)
Q Consensus 627 L~~L~l~~~~~l~~ 640 (658)
|++|++++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 99999999997765
No 223
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.86 E-value=0.00089 Score=69.16 Aligned_cols=92 Identities=10% Similarity=0.226 Sum_probs=47.2
Q ss_pred CCccEEEccccccccccc-cccCCCCCCEEecCCCccchhhh-hhhcCCCCCcEEeccCCcCCccCC-----CCCCcccE
Q 047214 557 GKITRLYLGQSAIEEVPS-SIECLTDLEVLDLRDCKRLKRIS-TRFCKLRSLVDLFLHGCLNLQSLP-----ALPLCLKS 629 (658)
Q Consensus 557 ~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~-----~l~~~L~~ 629 (658)
.+|+.+.+..+.. .++. .+.+++.|+.+.+... +..++ ..|.+|.+|+.+.+..+ ++.+. ++.+ |+.
T Consensus 265 ~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~-L~~ 338 (394)
T 4gt6_A 265 AYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQ-LER 338 (394)
T ss_dssp SSCCEEECCTTCC-EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTT-CCE
T ss_pred ccccEEecccccc-eecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCC-CCE
Confidence 4455555543322 2222 2566677777777532 23332 34666777777777542 44333 4555 666
Q ss_pred EeccCCccccccCC----CCCCccEEeccCC
Q 047214 630 LDLRDCKMLQSLPE----LPSCLEALDLTSC 656 (658)
Q Consensus 630 L~l~~~~~l~~i~~----~~~~L~~L~l~~~ 656 (658)
+.+..+ ++.|.. ...+|+.+++.++
T Consensus 339 i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 339 IAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred EEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 666432 344443 2345666666543
No 224
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.83 E-value=5.2e-06 Score=72.39 Aligned_cols=110 Identities=9% Similarity=-0.005 Sum_probs=61.6
Q ss_pred CCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhh
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLE 106 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 106 (658)
+-.++|++..++++.+.+..-. .....|.|+|.+|+|||++|+.+++... ..+.+. +..... +...
T Consensus 3 ~~~~iG~s~~~~~l~~~~~~~~-~~~~~vll~G~~GtGKt~lA~~i~~~~~----~~~~~~-~~~~~~----~~~~---- 68 (143)
T 3co5_A 3 AFDKLGNSAAIQEMNREVEAAA-KRTSPVFLTGEAGSPFETVARYFHKNGT----PWVSPA-RVEYLI----DMPM---- 68 (143)
T ss_dssp -----CCCHHHHHHHHHHHHHH-TCSSCEEEEEETTCCHHHHHGGGCCTTS----CEECCS-STTHHH----HCHH----
T ss_pred CcCceeCCHHHHHHHHHHHHHh-CCCCcEEEECCCCccHHHHHHHHHHhCC----CeEEec-hhhCCh----Hhhh----
Confidence 3468999999999998876422 2234578999999999999999987643 122222 111000 0001
Q ss_pred hcCCCCchhHHHHhcCcceEEEEeCCCCch--hhhhhhcccCCC-CCCCEEEEEecc
Q 047214 107 VAGANIPHFTKERVRRMKVLIVLDDVNEVG--QLEGLIGELDQF-GPGSRIVVTTRD 160 (658)
Q Consensus 107 ~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~l~~~l~~~-~~~~~ilvttR~ 160 (658)
.+.+. .+.-.+++|+++... ....+...+... ..+.++|+||..
T Consensus 69 --------~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 69 --------ELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp --------HHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred --------hHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 11111 124578999998764 233444333222 345788888764
No 225
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.69 E-value=0.00011 Score=77.41 Aligned_cols=96 Identities=11% Similarity=-0.026 Sum_probs=57.6
Q ss_pred eEEEEeCCCCch--hhhhhhcccCCCCCCCEEEEEe---------cc----h-HHHHhhcCCCceEEcCCCChHHHHHHH
Q 047214 125 VLIVLDDVNEVG--QLEGLIGELDQFGPGSRIVVTT---------RD----K-RVLEKFRGEKKIYRVNGLEFEEAFEHF 188 (658)
Q Consensus 125 ~LlvlDdv~~~~--~~~~l~~~l~~~~~~~~ilvtt---------R~----~-~~~~~~~~~~~~~~l~~L~~~~~~~l~ 188 (658)
-++++|+++... ..+.++..+...... -+|+.| .+ + .+.......+..+.+.+++.++..+.+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 499999998764 466666665443333 344344 21 1 122222245567899999999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHc-CCCcchhHHh
Q 047214 189 CNFAFEENHCPEDLNWHSQRVVEYA-DGNPLVPKVL 223 (658)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plai~~~ 223 (658)
..++..... .-.++.+..|++.+ .|.|-....+
T Consensus 376 ~~~~~~~~~--~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 376 KIRAQTEGI--NISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHTC--CBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHhCC--CCCHHHHHHHHHHccCCCHHHHHHH
Confidence 877532221 12234567788877 7877644333
No 226
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.63 E-value=8.1e-05 Score=82.60 Aligned_cols=176 Identities=15% Similarity=0.200 Sum_probs=99.8
Q ss_pred CCcccccchHhhHHHHhcc---cC------C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccch
Q 047214 28 NGLVGLNSRIEQIKPFLCM---DL------S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGG 97 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~---~~------~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 97 (658)
..+.|-++.+++|.+++.- .. + ..++-|.++|++|+|||+||++++......| +.+. ..+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~-~~~------ 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPE------ 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEE-HHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEE-hHH------
Confidence 4578899999888887642 00 1 3467789999999999999999998765432 2222 111
Q ss_pred hhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-------------hhhhhhcccCCC--CCCCEEEEEecchH
Q 047214 98 GKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-------------QLEGLIGELDQF--GPGSRIVVTTRDKR 162 (658)
Q Consensus 98 ~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~l~~~--~~~~~ilvttR~~~ 162 (658)
++....+.......+.+.+.-+..+.+|++|+++..- ....++..+... ..+..||.||....
T Consensus 274 --l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d 351 (806)
T 3cf2_A 274 --IMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (806)
T ss_dssp --HHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTT
T ss_pred --hhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChh
Confidence 1111111100000223334445678999999985421 122333322111 12344566665543
Q ss_pred -HHHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCcc
Q 047214 163 -VLEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNPL 218 (658)
Q Consensus 163 -~~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 218 (658)
+...+. ...+.+.+..-+.++-.++|+.+..+.....+. ....|++.+.|.--
T Consensus 352 ~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv---dl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV---DLEQVANETHGHVG 408 (806)
T ss_dssp TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC---CHHHHHHHCCSCCH
T ss_pred hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc---CHHHHHHhcCCCCH
Confidence 223331 235688999888888888888765332211111 15678888888753
No 227
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.59 E-value=4.9e-05 Score=75.45 Aligned_cols=60 Identities=22% Similarity=0.195 Sum_probs=39.7
Q ss_pred CCccccc----chHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cccCceEEEe
Q 047214 28 NGLVGLN----SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEFEGRCFLS 87 (658)
Q Consensus 28 ~~~vGR~----~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~~~~~~~ 87 (658)
+.|++.+ ..++.+.+++........+.+.|+|++|+|||+||..+++... .....++++.
T Consensus 124 d~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 124 SDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred hhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4566433 3444555666643212256788999999999999999999866 5444455544
No 228
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.54 E-value=0.0015 Score=62.79 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=90.2
Q ss_pred CCCCCCCcccccchHhhHHHHhcccC--------C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDL--------S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS 93 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~--------~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 93 (658)
|...-+.++|.+....++.+....-. + .-.+-+.|+|++|+||||||+.++..... ..+.+. .....
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~ 86 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFV 86 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHH
Confidence 44445678898877766665443110 0 11122889999999999999999987652 223332 11000
Q ss_pred ccchhhHhHHHhhhcCCCCchhHHHHh-cCcceEEEEeCCCCch------------h----hhhhhcccCCCC--CCCEE
Q 047214 94 ETGGGKILSEKLEVAGANIPHFTKERV-RRMKVLIVLDDVNEVG------------Q----LEGLIGELDQFG--PGSRI 154 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~------------~----~~~l~~~l~~~~--~~~~i 154 (658)
. ......... ...+.+.. ...+.++++|+++... . ...++..+.... ....+
T Consensus 87 ~-~~~~~~~~~--------i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~ 157 (254)
T 1ixz_A 87 E-MFVGVGAAR--------VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 157 (254)
T ss_dssp H-SCTTHHHHH--------HHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEE
T ss_pred H-HHhhHHHHH--------HHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 0 000000000 11122222 2346899999984321 1 223333332111 22234
Q ss_pred EEEecchHHHH-hhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 155 VVTTRDKRVLE-KFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 155 lvttR~~~~~~-~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
+.+|..+.... ... .....+.+...+.++-.+++.....+.....+. ....+++.+.|.-
T Consensus 158 ~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 221 (254)
T 1ixz_A 158 MAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 221 (254)
T ss_dssp EEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred EEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc---CHHHHHHHcCCCC
Confidence 45666554322 221 234578888888888888887665322111111 1345666666643
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.52 E-value=0.00022 Score=62.35 Aligned_cols=85 Identities=19% Similarity=0.296 Sum_probs=49.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeC
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDD 131 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDd 131 (658)
...++|+|+.|+|||||++.++......-..++++. ..+.... .+..+.-+||+||
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~-~~~~~~~-----------------------~~~~~~~lLilDE 91 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID-AASMPLT-----------------------DAAFEAEYLAVDQ 91 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE-TTTSCCC-----------------------GGGGGCSEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc-HHHhhHH-----------------------HHHhCCCEEEEeC
Confidence 457899999999999999999998654322255554 1111110 1123467899999
Q ss_pred CCCchh--hhhhhcccCCC-CCCC-EEEEEecc
Q 047214 132 VNEVGQ--LEGLIGELDQF-GPGS-RIVVTTRD 160 (658)
Q Consensus 132 v~~~~~--~~~l~~~l~~~-~~~~-~ilvttR~ 160 (658)
+..... -+.+...+... ..|. .+|+||+.
T Consensus 92 ~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 92 VEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 966432 22222222111 1234 48888884
No 230
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.51 E-value=0.00049 Score=73.99 Aligned_cols=158 Identities=17% Similarity=0.218 Sum_probs=79.3
Q ss_pred cccccchHhhHHHHhccc---CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh-hHhHHHh
Q 047214 30 LVGLNSRIEQIKPFLCMD---LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG-KILSEKL 105 (658)
Q Consensus 30 ~vGR~~~~~~l~~~l~~~---~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~~l~~~l 105 (658)
.+|-+...+.+.+.+.-. ......++.++|++|+||||+|+.++......|-. +. +........+ .......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~---i~-~~~~~~~~~~~g~~~~~i 158 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR---IS-LGGVRDESEIRGHRRTYV 158 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE---EC-CCC---------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE---EE-ecccchhhhhhhHHHHHh
Confidence 677777766665544311 11245689999999999999999999986543321 11 1111110000 0000111
Q ss_pred hhcCCCCchhHHHHhcCcceEEEEeCCCCchh------hhhhhcccCCCC---------------CCCEEEEEecchH-H
Q 047214 106 EVAGANIPHFTKERVRRMKVLIVLDDVNEVGQ------LEGLIGELDQFG---------------PGSRIVVTTRDKR-V 163 (658)
Q Consensus 106 ~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------~~~l~~~l~~~~---------------~~~~ilvttR~~~-~ 163 (658)
+..... ............-++++|+++.... ...++..+.... ....+|.||.... +
T Consensus 159 g~~~~~-~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l 237 (543)
T 3m6a_A 159 GAMPGR-IIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATI 237 (543)
T ss_dssp -----C-HHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTS
T ss_pred ccCchH-HHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccC
Confidence 111000 1111112222344889999976532 233443332110 3446676766543 1
Q ss_pred HHhhcCCCceEEcCCCChHHHHHHHHHHh
Q 047214 164 LEKFRGEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 164 ~~~~~~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
...+......+.+.+++.++-.+++..+.
T Consensus 238 ~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 238 PGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred CHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 11222334678999999999888887654
No 231
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.50 E-value=0.00047 Score=67.90 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=25.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
..++.+.++|++|+|||++|+.+++.....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~ 63 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGIN 63 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 445688899999999999999999987433
No 232
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.49 E-value=0.00071 Score=71.30 Aligned_cols=176 Identities=15% Similarity=0.130 Sum_probs=94.9
Q ss_pred CCCCCCCcccccchHhhHHHHhcccC--------C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDL--------S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS 93 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~--------~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 93 (658)
+...-..++|.++.+.++.+....-. + .-.+-+.|+|++|+|||+||+.++...... .+.+. .....
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~---~i~i~-g~~~~ 101 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---FITAS-GSDFV 101 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCC---EEEEE-GGGGT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-hhHHH
Confidence 34455779999988877776543110 0 112338899999999999999999886522 23333 11111
Q ss_pred ccchhhHhHHHhhhcCCCCchhHHHHhc----CcceEEEEeCCCCch----------------hhhhhhcccCCC--CCC
Q 047214 94 ETGGGKILSEKLEVAGANIPHFTKERVR----RMKVLIVLDDVNEVG----------------QLEGLIGELDQF--GPG 151 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~~~l~~~l~----~~~~LlvlDdv~~~~----------------~~~~l~~~l~~~--~~~ 151 (658)
. ...... ...+...++ ..+.++++|+++... .+..++..+... ...
T Consensus 102 ~-~~~g~~-----------~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~ 169 (499)
T 2dhr_A 102 E-MFVGVG-----------AARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 169 (499)
T ss_dssp S-SCTTHH-----------HHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCC
T ss_pred H-hhhhhH-----------HHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCcc
Confidence 0 000000 122222222 235899999985321 123343333211 233
Q ss_pred CEEEEEecchHHHH-hhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 152 SRIVVTTRDKRVLE-KFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 152 ~~ilvttR~~~~~~-~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
..++.+|..+.... ... .....+.++..+.++-.+++..++.+.....+. ....+++.+.|+.
T Consensus 170 viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv---~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 236 (499)
T ss_dssp CEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS---TTHHHHTTSCSCC
T ss_pred EEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH---HHHHHHHhcCCCC
Confidence 45566666654322 221 234588899889888888887665322111111 1355666676665
No 233
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.45 E-value=0.00087 Score=67.40 Aligned_cols=152 Identities=13% Similarity=0.154 Sum_probs=83.8
Q ss_pred CCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhh
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLE 106 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~ 106 (658)
...++|++..++.+...+... +.+.++|++|+|||++|+.+++.....|.. +. ........ +.+.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~-----~~vll~G~pGtGKT~la~~la~~~~~~~~~---i~-~~~~~~~~--~l~g~~~~ 94 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG-----GHILLEGVPGLAKTLSVNTLAKTMDLDFHR---IQ-FTPDLLPS--DLIGTMIY 94 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT-----CCEEEESCCCHHHHHHHHHHHHHTTCCEEE---EE-CCTTCCHH--HHHEEEEE
T ss_pred ccceeCcHHHHHHHHHHHHcC-----CeEEEECCCCCcHHHHHHHHHHHhCCCeEE---Ee-cCCCCChh--hcCCceee
Confidence 467999999999988887652 358899999999999999999976543321 11 11000000 11111000
Q ss_pred hcCCCCchhHHHHhcC---cceEEEEeCCCCch--hhhhhhcccCC-----------CCCCCEEEEEecchH------HH
Q 047214 107 VAGANIPHFTKERVRR---MKVLIVLDDVNEVG--QLEGLIGELDQ-----------FGPGSRIVVTTRDKR------VL 164 (658)
Q Consensus 107 ~~~~~~~~~l~~~l~~---~~~LlvlDdv~~~~--~~~~l~~~l~~-----------~~~~~~ilvttR~~~------~~ 164 (658)
....... ..+. ...++++|+++... ....+...+.. ......++.|++... +.
T Consensus 95 ~~~~~~~-----~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~ 169 (331)
T 2r44_A 95 NQHKGNF-----EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLP 169 (331)
T ss_dssp ETTTTEE-----EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCC
T ss_pred cCCCCce-----EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCC
Confidence 0000000 0011 13699999997654 23333322211 123445555555221 11
Q ss_pred HhhcCCCc-eEEcCCCChHHHHHHHHHHhcC
Q 047214 165 EKFRGEKK-IYRVNGLEFEEAFEHFCNFAFE 194 (658)
Q Consensus 165 ~~~~~~~~-~~~l~~L~~~~~~~l~~~~~~~ 194 (658)
..+..... .+.+.+.+.++-.+++......
T Consensus 170 ~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 170 EAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp HHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred HHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 22223333 6899999999999998887643
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.45 E-value=0.0015 Score=63.74 Aligned_cols=180 Identities=14% Similarity=0.124 Sum_probs=91.3
Q ss_pred CCCCCCCcccccchHhhHHHHhcccC--------C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDL--------S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNS 93 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~--------~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~ 93 (658)
|...-+.++|.+...+++.+....-. + .-.+-+.|+|++|+||||||+.++..... ..+.+. .....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~ 110 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFV 110 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHH
Confidence 44455678999888777766543110 0 11122889999999999999999987652 223332 11100
Q ss_pred ccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCc------------hh----hhhhhcccCCCC--CCCEEE
Q 047214 94 ETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEV------------GQ----LEGLIGELDQFG--PGSRIV 155 (658)
Q Consensus 94 ~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~------------~~----~~~l~~~l~~~~--~~~~il 155 (658)
. .........+ ...+...-...+.++++|+++.. .. ...++..+.... ....++
T Consensus 111 ~-~~~~~~~~~i-------~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~ 182 (278)
T 1iy2_A 111 E-MFVGVGAARV-------RDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVM 182 (278)
T ss_dssp H-STTTHHHHHH-------HHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEE
T ss_pred H-HHhhHHHHHH-------HHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 0 0000000000 11112222235689999998422 11 223333332211 222344
Q ss_pred EEecchHHH-Hhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCCc
Q 047214 156 VTTRDKRVL-EKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGNP 217 (658)
Q Consensus 156 vttR~~~~~-~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 217 (658)
.+|..+... .... .....+.+...+.++-.+++.....+.....+. ....+++.+.|..
T Consensus 183 a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~---~~~~la~~~~G~~ 245 (278)
T 1iy2_A 183 AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV---DLALLAKRTPGFV 245 (278)
T ss_dssp EEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred EecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc---CHHHHHHHcCCCC
Confidence 556555321 1111 234588899889888888887665322111111 1345666666654
No 235
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.43 E-value=0.00041 Score=79.18 Aligned_cols=128 Identities=20% Similarity=0.220 Sum_probs=70.6
Q ss_pred CcccccchHhhHHHHhcccC------CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhH
Q 047214 29 GLVGLNSRIEQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILS 102 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~~~------~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 102 (658)
.++|.+..++.+...+.... +.....+.|+|++|+|||++|+.+++.....-...+.+. .+...... ...
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~-~~~~~~~~---~~s 634 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID-MTEYMEKH---AVS 634 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC-TTTCCSSG---GGG
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhccchh---HHH
Confidence 47999999988888776321 012368899999999999999999998643222334443 22222211 111
Q ss_pred HHhhh----cCCCCchhHHHHhcCc-ceEEEEeCCCCch--hhhhhhcccCCCC-----------CCCEEEEEecc
Q 047214 103 EKLEV----AGANIPHFTKERVRRM-KVLIVLDDVNEVG--QLEGLIGELDQFG-----------PGSRIVVTTRD 160 (658)
Q Consensus 103 ~~l~~----~~~~~~~~l~~~l~~~-~~LlvlDdv~~~~--~~~~l~~~l~~~~-----------~~~~ilvttR~ 160 (658)
..++. .+.+....+.+.++.+ .-+|+||+++... ....++..+.... .+..||+||..
T Consensus 635 ~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 635 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp GC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCT
T ss_pred HHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCc
Confidence 11111 0111113344444433 4699999997654 3445554443211 23447777764
No 236
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.39 E-value=0.0021 Score=65.78 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=37.8
Q ss_pred CcccccchHhhHHHHhcc---------------------------cCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 29 GLVGLNSRIEQIKPFLCM---------------------------DLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~---------------------------~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
.++|.+..++.+...+.. ........+.++|++|+|||++|+.+++....
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 488999988888877620 00023456889999999999999999998643
No 237
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.38 E-value=3.3e-05 Score=70.58 Aligned_cols=19 Identities=11% Similarity=0.057 Sum_probs=12.3
Q ss_pred hhhcCCCCCcEEEeecC-cc
Q 047214 380 GAFTNMSNLRLLKFYVP-KL 398 (658)
Q Consensus 380 ~~~~~~~~L~~L~l~~~-~~ 398 (658)
..+...+.|+.|++++| .+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i 49 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNI 49 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTC
T ss_pred HHHhcCCCCCEEEecCCCCC
Confidence 34556677777777776 55
No 238
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.37 E-value=0.00034 Score=78.97 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=86.0
Q ss_pred CCcccccchHhhHHHHhcccC------CCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHh
Q 047214 28 NGLVGLNSRIEQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKIL 101 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~------~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 101 (658)
..++|.+..++.+...+.... +.....+.++|++|+|||++|+.+++.... ..+.+. .++...... +
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~---~~~~i~-~s~~~~~~~---~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI---ELLRFD-MSEYMERHT---V 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC---EEEEEE-GGGCSSSSC---C
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC---CEEEEe-chhhcchhh---H
Confidence 458899999988888776311 123357899999999999999999998732 222233 222221100 0
Q ss_pred HHHhhhcCCCC----chhHHHHhcC-cceEEEEeCCCCch--hhhhhhcccCCC-----------CCCCEEEEEecchH-
Q 047214 102 SEKLEVAGANI----PHFTKERVRR-MKVLIVLDDVNEVG--QLEGLIGELDQF-----------GPGSRIVVTTRDKR- 162 (658)
Q Consensus 102 ~~~l~~~~~~~----~~~l~~~l~~-~~~LlvlDdv~~~~--~~~~l~~~l~~~-----------~~~~~ilvttR~~~- 162 (658)
...++...... ...+.+.++. ...+++||+++... ....++..+... -.+..||+||....
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~ 610 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVR 610 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC
T ss_pred hhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchh
Confidence 11111100000 1223334433 35799999997654 234444433211 02345777775411
Q ss_pred -------------------------HHHhhcCC-CceEEcCCCChHHHHHHHHHHh
Q 047214 163 -------------------------VLEKFRGE-KKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 163 -------------------------~~~~~~~~-~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
....+... ...+.+.+++.++..+++...+
T Consensus 611 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 611 ETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp -----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 00111122 3567888888887777776554
No 239
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.35 E-value=2.3e-05 Score=71.59 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=62.7
Q ss_pred ccceEEeccc-CCCC-----CCCCC-CCCCccEEEecCCCccc-----ccccccCCCCccEEeccCCCccccc-----C-
Q 047214 424 NLRYLHWDKY-PLRT-----LPSNF-KPENLVELNLHFSKVEQ-----LWEGKKEAFKLKSINLSHCRHFIDM-----S- 485 (658)
Q Consensus 424 ~L~~L~l~~~-~l~~-----lp~~~-~l~~L~~L~L~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~-----~- 485 (658)
.|++|+|++| .+.. +.... ...+|++|+|++|.+.. +...+...++|++|++++|. +++. .
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~ 115 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVE 115 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHH
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHH
Confidence 7777777777 6652 11111 45677788888777752 33345556678888888774 3321 2
Q ss_pred -CCcCCCccEEEe--ecCCccc-----ccccccCCCCCCEEeccCC
Q 047214 486 -YPSAPNLETYLL--DYTNFAC-----VPSSIQNFKYLSALSFEGC 523 (658)
Q Consensus 486 -l~~l~~L~~L~l--~~~~~~~-----~~~~~~~l~~L~~L~l~~~ 523 (658)
+...++|++|++ ++|.+.. +...+...++|++|++++|
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 556677888888 6677744 3345566677888888776
No 240
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.29 E-value=0.031 Score=57.06 Aligned_cols=213 Identities=11% Similarity=0.099 Sum_probs=106.4
Q ss_pred ccCchhhcCCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC-CCCCccEEEecC
Q 047214 376 NLDSGAFTNMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF-KPENLVELNLHF 454 (658)
Q Consensus 376 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~ 454 (658)
.+...+|.++.+|+.+.+..+ + ..+....+.-. .|..+.+.. +++.++... ...+|+.+.+..
T Consensus 59 ~Ig~~aF~~C~~L~~I~lp~~-v-------------~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 59 SIGEANFNSCYNMTKVTVAST-V-------------TSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDDFEFPG 122 (379)
T ss_dssp EECTTTTTTCTTCCEEEECTT-C-------------CEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSEEECCT
T ss_pred ChHHHHhhCCCCCCEEEeCCc-c-------------eEechhhhcCC-CCceEECCc-eeeEeccceeccCCcccccCCC
Confidence 456778999999999998654 2 12333322222 455555543 355555443 334677777754
Q ss_pred CCcccccccccCCCCccEEeccCCCcccccC---CCcCCCccEEEeecCCc-----------------------------
Q 047214 455 SKVEQLWEGKKEAFKLKSINLSHCRHFIDMS---YPSAPNLETYLLDYTNF----------------------------- 502 (658)
Q Consensus 455 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~---l~~l~~L~~L~l~~~~~----------------------------- 502 (658)
+ +..+......-.+|+.+.+..+ +..+. +..+.+++.+.+..+..
T Consensus 123 ~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (379)
T 4h09_A 123 A-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEF 199 (379)
T ss_dssp T-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEE
T ss_pred c-cccccccccccceeeeeeccce--eeccccchhcccccccccccccccceeecccceecccccceecccccccccccc
Confidence 4 2333222111123444333322 11111 44444444444332110
Q ss_pred ------cc-ccccccCCCCCCEEeccCCCCCCcCCC--CCCCCCCcEEeccCCCCccccC----cccCCccEEEcccccc
Q 047214 503 ------AC-VPSSIQNFKYLSALSFEGCKSLRSFPS--NFRFVCPVTINFSSCVNLIEFP----QISGKITRLYLGQSAI 569 (658)
Q Consensus 503 ------~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~~~i 569 (658)
.. ....+..+.+|+.+.+.. .+..+.. ...+..|+.+.+..+ ++.+. ....+|+.+.+.. .+
T Consensus 200 ~~~~~~~~i~~~~f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i 274 (379)
T 4h09_A 200 TIPSTVKTVTAYGFSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KV 274 (379)
T ss_dssp ECCTTCCEECTTTTTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CC
T ss_pred ccccceeEEeecccccccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cc
Confidence 00 112233444555555543 2333322 225666766666542 33222 2345677777643 35
Q ss_pred cccccc-ccCCCCCCEEecCCCccchhh-hhhhcCCCCCcEEeccC
Q 047214 570 EEVPSS-IECLTDLEVLDLRDCKRLKRI-STRFCKLRSLVDLFLHG 613 (658)
Q Consensus 570 ~~~~~~-~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~ 613 (658)
..++.. +.++++|+.+.+.++. +..+ ...|.+|.+|+.+.+..
T Consensus 275 ~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 275 KTVPYLLCSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp SEECTTTTTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCT
T ss_pred eeccccccccccccccccccccc-cceehhhhhcCCCCCCEEEcCc
Confidence 555543 6788888888887654 3333 34577888888888853
No 241
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.25 E-value=0.00052 Score=77.43 Aligned_cols=154 Identities=14% Similarity=0.186 Sum_probs=87.2
Q ss_pred CCCCcccccchHhhHHHHhcc-----------cCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccc
Q 047214 26 SSNGLVGLNSRIEQIKPFLCM-----------DLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSE 94 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~-----------~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~ 94 (658)
.-..++|.+..++++.+++.. .. .....|.|+|++|+||||+|+.++......| +.+. ......
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i-~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~~ 276 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMS 276 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCC-CCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHSS
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhhh
Confidence 336689999999999998863 11 3455789999999999999999998764433 2222 111100
Q ss_pred cchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch-------------hhhhhhcccCCC--CCCCEEEEEec
Q 047214 95 TGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG-------------QLEGLIGELDQF--GPGSRIVVTTR 159 (658)
Q Consensus 95 ~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------------~~~~l~~~l~~~--~~~~~ilvttR 159 (658)
. ........+ ...+.+.....+.++++|+++... ....++..+... ..+..++.||.
T Consensus 277 ~-~~g~~~~~l-------~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn 348 (806)
T 1ypw_A 277 K-LAGESESNL-------RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp S-STTHHHHHH-------HHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECS
T ss_pred h-hhhhHHHHH-------HHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccC
Confidence 0 000000100 122233334467899999984321 122233322211 23455666666
Q ss_pred chH-HHHhhc---CCCceEEcCCCChHHHHHHHHHHh
Q 047214 160 DKR-VLEKFR---GEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 160 ~~~-~~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
.+. +...+. .....+.+...+.++-.+++....
T Consensus 349 ~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp CTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred CchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 542 222221 223567888888888888887665
No 242
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.25 E-value=0.0057 Score=59.37 Aligned_cols=152 Identities=16% Similarity=0.076 Sum_probs=78.9
Q ss_pred CCCcccccchHhhHHHHhccc-----------CCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccccc
Q 047214 27 SNGLVGLNSRIEQIKPFLCMD-----------LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSET 95 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~-----------~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 95 (658)
=..+.|-++..++|.+.+... -....+ ++|+|++|+||||||+.++....- ..+.+. ..+...
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~~- 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELLN- 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTCS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHHh-
Confidence 355677777666666543210 001223 899999999999999999987543 233333 111110
Q ss_pred chhhHhHHHhhhcCCCCchhHHHH-hcCcceEEEEeCCCCch-------------hhhhhhcccCCC--CCCCEEEEEec
Q 047214 96 GGGKILSEKLEVAGANIPHFTKER-VRRMKVLIVLDDVNEVG-------------QLEGLIGELDQF--GPGSRIVVTTR 159 (658)
Q Consensus 96 ~~~~~l~~~l~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~-------------~~~~l~~~l~~~--~~~~~ilvttR 159 (658)
......... ...+.+. -...+.++++|+++... ....++..+... ....-++.+|.
T Consensus 83 ~~~~~~~~~--------i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn 154 (274)
T 2x8a_A 83 MYVGESERA--------VRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATN 154 (274)
T ss_dssp STTHHHHHH--------HHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEES
T ss_pred hhhhHHHHH--------HHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecC
Confidence 000000110 1111122 13457899999996531 112222222211 12334556666
Q ss_pred chHHH-Hhhc---CCCceEEcCCCChHHHHHHHHHHh
Q 047214 160 DKRVL-EKFR---GEKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 160 ~~~~~-~~~~---~~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
.+... .... .-...+.+..-+.++-.++++...
T Consensus 155 ~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 155 RPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred ChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 66432 2221 345678888888888888887765
No 243
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.17 E-value=0.00026 Score=68.13 Aligned_cols=35 Identities=29% Similarity=0.248 Sum_probs=16.2
Q ss_pred ccceEEecccCCCCCCCC---C-CCCCccEEEecCCCcc
Q 047214 424 NLRYLHWDKYPLRTLPSN---F-KPENLVELNLHFSKVE 458 (658)
Q Consensus 424 ~L~~L~l~~~~l~~lp~~---~-~l~~L~~L~L~~~~i~ 458 (658)
+|+.|+|++|.+..++.. + .+++|+.|+|++|.+.
T Consensus 171 ~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 171 ELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp TCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 455555555555544321 1 3444444444444444
No 244
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.17 E-value=0.00028 Score=67.85 Aligned_cols=64 Identities=22% Similarity=0.177 Sum_probs=36.8
Q ss_pred CCCCCcEEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCCCCC--CccEEEecCCCcc
Q 047214 384 NMSNLRLLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNFKPE--NLVELNLHFSKVE 458 (658)
Q Consensus 384 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~~l~--~L~~L~L~~~~i~ 458 (658)
++++|+.|++++|.+.++ ..+|..+..++ +|++|+|++|.++.+.....+. +|+.|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l----------~~l~~~~~~l~-~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRL----------DDMSSIVQKAP-NLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCC----------GGGTTHHHHST-TCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCC----------ccchhHHhhCC-CCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 466777777777776443 12445555666 7777777777776553322222 5555555555543
No 245
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.04 E-value=0.0012 Score=59.55 Aligned_cols=110 Identities=18% Similarity=0.177 Sum_probs=61.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhh-------h--c--C----------C
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLE-------V--A--G----------A 110 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~-------~--~--~----------~ 110 (658)
...|.|++..|.||||+|-..+-+...+--.+.++.-+..........++... . . . . .
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHH
Confidence 34666777777999999999999866554455555322211111111222221 1 0 0 0 0
Q ss_pred CCchhHHHHhcC-cceEEEEeCCCC-----chhhhhhhcccCCCCCCCEEEEEecchH
Q 047214 111 NIPHFTKERVRR-MKVLIVLDDVNE-----VGQLEGLIGELDQFGPGSRIVVTTRDKR 162 (658)
Q Consensus 111 ~~~~~l~~~l~~-~~~LlvlDdv~~-----~~~~~~l~~~l~~~~~~~~ilvttR~~~ 162 (658)
...+..++.+.+ +-=|||||++.. ....+.+...+.......-||+|+|..+
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 002334444444 346999999833 3344555555555566788999999875
No 246
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.02 E-value=0.0014 Score=65.95 Aligned_cols=112 Identities=11% Similarity=0.138 Sum_probs=67.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceE-EEeccccccccchhhHhHHH-hhhcCCCCchhHHHHhcCcceEEE
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRC-FLSDIRKNSETGGGKILSEK-LEVAGANIPHFTKERVRRMKVLIV 128 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~l~~~l~~~~~Llv 128 (658)
...+++|.|+.|+||||+++.++..........+ .+.+..+.........+.+. .........+.+...|...+=+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 3459999999999999999999887554322233 22211111110000011110 011111225678888999999999
Q ss_pred EeCCCCchhhhhhhcccCCCCCCCEEEEEecchHHHH
Q 047214 129 LDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRVLE 165 (658)
Q Consensus 129 lDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~~~ 165 (658)
+|+..+.+.++.+.... ..|..+++|+.......
T Consensus 202 lDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 202 VGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp ESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHHH
T ss_pred cCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHHH
Confidence 99999877766655542 34677999998776543
No 247
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.93 E-value=0.0028 Score=60.36 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...+.++|++|+|||.+|..+++.+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4579999999999999999999863
No 248
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.75 E-value=0.001 Score=60.34 Aligned_cols=103 Identities=14% Similarity=0.104 Sum_probs=52.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe-ccccccccchhhHhHHHhhhc----CCCCchhHHHHhcCcceEE
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS-DIRKNSETGGGKILSEKLEVA----GANIPHFTKERVRRMKVLI 127 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~l~~~----~~~~~~~l~~~l~~~~~Ll 127 (658)
.++.++|+.|+||||++.+++.+....-..++++. ...... ....+....+.. .....+.+.+.+.++.-+|
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~---~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~dvv 80 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRY---HSTMIVSHSGNGVEAHVIERPEEMRKYIEEDTRGV 80 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC--------CCCEECC----CEECEEESSGGGGGGGCCTTEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecccccc---CcccEEecCCCceeeEEECCHHHHHHHhcCCCCEE
Confidence 47889999999999999888877543222233332 111100 000000000000 0001223333344456799
Q ss_pred EEeCCCCc-hhhhhhhcccCCCCCCCEEEEEecc
Q 047214 128 VLDDVNEV-GQLEGLIGELDQFGPGSRIVVTTRD 160 (658)
Q Consensus 128 vlDdv~~~-~~~~~l~~~l~~~~~~~~ilvttR~ 160 (658)
++|++... .+|...+..+.. .+..|++|.+.
T Consensus 81 iIDE~Q~~~~~~~~~l~~l~~--~~~~Vi~~Gl~ 112 (184)
T 2orw_A 81 FIDEVQFFNPSLFEVVKDLLD--RGIDVFCAGLD 112 (184)
T ss_dssp EECCGGGSCTTHHHHHHHHHH--TTCEEEEEEES
T ss_pred EEECcccCCHHHHHHHHHHHH--CCCCEEEEeec
Confidence 99998665 345544443332 27788888774
No 249
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.72 E-value=0.00078 Score=74.79 Aligned_cols=176 Identities=14% Similarity=0.207 Sum_probs=78.5
Q ss_pred CCCCcccccchHhhHHHHhccc---------CC-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccccc
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMD---------LS-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSET 95 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~---------~~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 95 (658)
.-....|.++..++|.+.+.-. .+ ...+-+.++|++|+|||.+|++++......| +. +..
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-----~~-v~~---- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----IS-IKG---- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE-----EE-CCH----
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce-----EE-ecc----
Confidence 3345667777776666654311 00 2345678999999999999999999865432 11 111
Q ss_pred chhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEeCCCCch----------------hhhhhhcccCCCC--CCCEEEEE
Q 047214 96 GGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLDDVNEVG----------------QLEGLIGELDQFG--PGSRIVVT 157 (658)
Q Consensus 96 ~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~----------------~~~~l~~~l~~~~--~~~~ilvt 157 (658)
-+++....+.......+.+...=+..+.+|++|+++..- ....++..+.... .+.-||.|
T Consensus 545 --~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~a 622 (806)
T 3cf2_A 545 --PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGA 622 (806)
T ss_dssp --HHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC
T ss_pred --chhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEe
Confidence 012222222111000222222334568999999985421 1334444433222 22233445
Q ss_pred ecchH-HHHhhc---CCCceEEcCCCChHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHcCCC
Q 047214 158 TRDKR-VLEKFR---GEKKIYRVNGLEFEEAFEHFCNFAFEENHCPEDLNWHSQRVVEYADGN 216 (658)
Q Consensus 158 tR~~~-~~~~~~---~~~~~~~l~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 216 (658)
|..+. +..++. ...+.+.+..-+.++-.++|+.+..+.....+ . ....+++.+.|.
T Consensus 623 TN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~-~--dl~~la~~t~g~ 682 (806)
T 3cf2_A 623 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD-V--DLEFLAKMTNGF 682 (806)
T ss_dssp -CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------
T ss_pred CCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCC-C--CHHHHHHhCCCC
Confidence 54432 222221 33557777766776667777666533221111 1 135566666663
No 250
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.69 E-value=0.017 Score=58.17 Aligned_cols=166 Identities=13% Similarity=-0.009 Sum_probs=103.1
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc-cccCceEEEeccccccccchhhHhHHHhhhcCCCCchhH
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS-SEFEGRCFLSDIRKNSETGGGKILSEKLEVAGANIPHFT 116 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l 116 (658)
+++.+.+.. .-.++..++|+.|.||++.+.++.+.+. ..|+....+. +... ..+..+.+.+.
T Consensus 7 ~~l~~~l~~---~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~---~~~~~l~~~~~---------- 69 (343)
T 1jr3_D 7 EQLRAQLNE---GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-IDPN---TDWNAIFSLCQ---------- 69 (343)
T ss_dssp TTHHHHHHH---CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCTT---CCHHHHHHHHH----------
T ss_pred HHHHHHHhc---CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ecCC---CCHHHHHHHhc----------
Confidence 345555552 3467899999999999999999999853 3443211111 1111 11111111000
Q ss_pred HHHhcCcceEEEEeCCCC-c--hhhhhhhcccCCCCCCCEEEEEecc-------hHHHHhhcCCCceEEcCCCChHHHHH
Q 047214 117 KERVRRMKVLIVLDDVNE-V--GQLEGLIGELDQFGPGSRIVVTTRD-------KRVLEKFRGEKKIYRVNGLEFEEAFE 186 (658)
Q Consensus 117 ~~~l~~~~~LlvlDdv~~-~--~~~~~l~~~l~~~~~~~~ilvttR~-------~~~~~~~~~~~~~~~l~~L~~~~~~~ 186 (658)
..-+-+.+-++|+|+++. . +.++.++..+..-.+++.+|+++.. ..+.......+..+...+++.++..+
T Consensus 70 ~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 70 AMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPR 149 (343)
T ss_dssp HHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHH
T ss_pred CcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHH
Confidence 011235677899999876 3 4567777666544556777766543 24555654677899999999999998
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHcCCCcchhHH
Q 047214 187 HFCNFAFEENHCPEDLNWHSQRVVEYADGNPLVPKV 222 (658)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plai~~ 222 (658)
.+.+.+...+. .-.++.++.+++.++|.+..+..
T Consensus 150 ~l~~~~~~~g~--~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 150 WVAARAKQLNL--ELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHTTC--EECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHHHhchHHHHHHH
Confidence 88877643322 22345678899999998876654
No 251
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.55 E-value=0.0034 Score=60.34 Aligned_cols=111 Identities=10% Similarity=0.131 Sum_probs=63.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccc-cchhhHhHH-HhhhcCCCCchhHHHHhcCcceEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSE-TGGGKILSE-KLEVAGANIPHFTKERVRRMKVLI 127 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~l~~-~l~~~~~~~~~~l~~~l~~~~~Ll 127 (658)
....+++|+|+.|+||||+++.++..+...+...+++....-... ......+.+ .++.........+...+..++-++
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 446799999999999999999998875443234444431111000 000000000 001111111445666677788899
Q ss_pred EEeCCCCchhhhhhhcccCCCCCCCEEEEEecchHH
Q 047214 128 VLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKRV 163 (658)
Q Consensus 128 vlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~~ 163 (658)
++|+..+.+....++... ..|..|++|+.....
T Consensus 103 llDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 103 FVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp EESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred EeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 999998665544444332 346778888887654
No 252
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.53 E-value=0.0031 Score=58.13 Aligned_cols=45 Identities=27% Similarity=0.322 Sum_probs=34.6
Q ss_pred ccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 33 LNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 33 R~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
|++.++++.+.+.........+++|.|.+|+||||+++.+.....
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455667777766643224568999999999999999999998754
No 253
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.51 E-value=0.0038 Score=58.30 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=31.3
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..+.+.+...- ....++.|.|++|+||||++..++. ..-..++|+.
T Consensus 7 ~~LD~~l~Ggi-~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 7 KSLDSLLGGGF-APGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp HHHHHHTTSSB-CTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred HHHHHhhcCCC-cCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 34444443221 3346899999999999999999998 2234566665
No 254
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.45 E-value=0.14 Score=51.97 Aligned_cols=121 Identities=18% Similarity=0.237 Sum_probs=84.4
Q ss_pred CCcCCCccEEEeecCCccccc-ccccCCCCCCEEeccCCCCCCcCCCCC--CCCCCcEEeccCCCCccccC----cccCC
Q 047214 486 YPSAPNLETYLLDYTNFACVP-SSIQNFKYLSALSFEGCKSLRSFPSNF--RFVCPVTINFSSCVNLIEFP----QISGK 558 (658)
Q Consensus 486 l~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~----~~~~~ 558 (658)
+....+|+.+.+.. .+..++ ..+..+.+|+.+.+..+ ++.+.... ++.+|+.+.+... +..++ ..+.+
T Consensus 213 f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~--i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK--VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC--CSEECTTTTTTCTT
T ss_pred cccccccceeeecc-ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc--ceeccccccccccc
Confidence 56677788877764 344443 35678888999888753 55555432 6778888888652 44333 34578
Q ss_pred ccEEEcccccccccccc-ccCCCCCCEEecCCCccchhhh-hhhcCCCCCcEEeccC
Q 047214 559 ITRLYLGQSAIEEVPSS-IECLTDLEVLDLRDCKRLKRIS-TRFCKLRSLVDLFLHG 613 (658)
Q Consensus 559 L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 613 (658)
|+.+.+.++.++.++.. |.++.+|+.+.|..+ +..+. ..|.+|.+|+.+.+..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence 99999988888888764 889999999999753 34443 4577888888887753
No 255
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.43 E-value=0.0013 Score=64.41 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=41.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEec-cccccccchhhHhHHHhhhcCCCCchhHHHHhcCcceEEEEe
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSD-IRKNSETGGGKILSEKLEVAGANIPHFTKERVRRMKVLIVLD 130 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlD 130 (658)
.+++.|+|++|+|||+||.+++.. ....++|+.. ..+. +.... ...+...+.+.+.+...+ ++|+|
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~-----v~~~~----~~le~~l~~i~~~l~~~~-LLVID 189 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEP-----LSGYN----TDFNVFVDDIARAMLQHR-VIVID 189 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCS-----STTCB----CCHHHHHHHHHHHHHHCS-EEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhh-----hhhhh----cCHHHHHHHHHHHHhhCC-EEEEe
Confidence 456789999999999999999986 1223445542 0111 00000 000000233455565556 99999
Q ss_pred CCCCc
Q 047214 131 DVNEV 135 (658)
Q Consensus 131 dv~~~ 135 (658)
++...
T Consensus 190 sI~aL 194 (331)
T 2vhj_A 190 SLKNV 194 (331)
T ss_dssp CCTTT
T ss_pred ccccc
Confidence 98654
No 256
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.33 E-value=0.0053 Score=57.14 Aligned_cols=104 Identities=13% Similarity=-0.029 Sum_probs=57.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhhcCC----CCchhHHHHhcC----
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEVAGA----NIPHFTKERVRR---- 122 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~l~~~l~~---- 122 (658)
...++.++|..|+||||++..++.+...+...++.+...-+ .. ....+.+.++.... .....+.+.++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~ 87 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFN 87 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhC
Confidence 35788999999999999999999997655444544431111 11 11111111111111 012334444433
Q ss_pred c-ceEEEEeCCCCc--hhhhhhhcccCCCCCCCEEEEEecc
Q 047214 123 M-KVLIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRD 160 (658)
Q Consensus 123 ~-~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilvttR~ 160 (658)
. .-++|+|.+... +.++.+ ..+.. .+..|++|.+.
T Consensus 88 ~~~dvViIDEaQ~l~~~~ve~l-~~L~~--~gi~Vil~Gl~ 125 (223)
T 2b8t_A 88 DETKVIGIDEVQFFDDRICEVA-NILAE--NGFVVIISGLD 125 (223)
T ss_dssp TTCCEEEECSGGGSCTHHHHHH-HHHHH--TTCEEEEECCS
T ss_pred CCCCEEEEecCccCcHHHHHHH-HHHHh--CCCeEEEEecc
Confidence 3 459999998643 233333 22222 27889999884
No 257
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.32 E-value=0.0039 Score=63.49 Aligned_cols=49 Identities=16% Similarity=0.147 Sum_probs=38.2
Q ss_pred CcccccchHhhHHHHhcc------------cCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 29 GLVGLNSRIEQIKPFLCM------------DLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~------------~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.++|.+..++.+...+.. ......+.+.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 379999999988887730 0002346788999999999999999999864
No 258
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.24 E-value=0.0082 Score=61.00 Aligned_cols=110 Identities=10% Similarity=0.132 Sum_probs=64.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccc-cchhhHhHH-HhhhcCCCCchhHHHHhcCcceEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSE-TGGGKILSE-KLEVAGANIPHFTKERVRRMKVLI 127 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~l~~-~l~~~~~~~~~~l~~~l~~~~~Ll 127 (658)
....+++|+|+.|+||||+++.++..+.......+.+........ ......+.+ .++.........++..+...+-++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 345789999999999999999999875543233333221111000 000011111 011111222556777788888899
Q ss_pred EEeCCCCchhhhhhhcccCCCCCCCEEEEEecchH
Q 047214 128 VLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRDKR 162 (658)
Q Consensus 128 vlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~~~ 162 (658)
++|++.+.+.+..++... ..|..++.|+....
T Consensus 214 lldE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 214 FVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp EESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred EECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 999998766555544432 34667888877654
No 259
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.23 E-value=0.0047 Score=65.10 Aligned_cols=45 Identities=22% Similarity=0.176 Sum_probs=38.0
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..++|++..++.+...+... ..|.|+|++|+|||++|+.++....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~-----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG-----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT-----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC-----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 45999999998888877642 3688999999999999999998764
No 260
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.23 E-value=0.018 Score=53.26 Aligned_cols=105 Identities=11% Similarity=0.075 Sum_probs=55.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhh-------hcCCCC-chhHHHHhcCcc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLE-------VAGANI-PHFTKERVRRMK 124 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~-------~~~~~~-~~~l~~~l~~~~ 124 (658)
-.|.+.|.||+||||+|..++.........+.++. +...........+...-. ..+... ...+...+..+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d-~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~p 85 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV-VETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAAP 85 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE-CCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE-eCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhcCC
Confidence 45789999999999999999988655433343333 222111111111111000 000000 134455455667
Q ss_pred eEEEEeCCCCc--------hhhhhhhcccCCCCCCCEEEEEecch
Q 047214 125 VLIVLDDVNEV--------GQLEGLIGELDQFGPGSRIVVTTRDK 161 (658)
Q Consensus 125 ~LlvlDdv~~~--------~~~~~l~~~l~~~~~~~~ilvttR~~ 161 (658)
=++|+|++-.. ..|+.+...+ ..|..++.|+.-.
T Consensus 86 dlvIVDElG~~~~~~~r~~~~~qDV~~~l---~sgidVitT~Nlq 127 (228)
T 2r8r_A 86 SLVLVDELAHTNAPGSRHTKRWQDIQELL---AAGIDVYTTVNVQ 127 (228)
T ss_dssp SEEEESCTTCBCCTTCSSSBHHHHHHHHH---HTTCEEEEEEEGG
T ss_pred CEEEEeCCCCCCcccchhHHHHHHHHHHH---cCCCCEEEEcccc
Confidence 89999986432 1355554432 2466788887633
No 261
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.17 E-value=0.021 Score=57.17 Aligned_cols=53 Identities=23% Similarity=0.129 Sum_probs=38.6
Q ss_pred cchHhhHHHHhc-ccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 34 NSRIEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 34 ~~~~~~l~~~l~-~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..-..+|...|. ..- ....++.|+|++|+||||||.+++..+...-..++|+.
T Consensus 43 ~TG~~~LD~~Lg~GGi-~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 43 PTGSLAIDIATGVGGY-PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CCSCHHHHHHTSSSSE-ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCHHHHHHhccCCc-cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 334567777775 222 34579999999999999999999998654444566765
No 262
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.15 E-value=0.0057 Score=57.58 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.-.+++|.|++|+|||||++.++...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999853
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.10 E-value=0.0031 Score=56.72 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+|.|+|++|+||||+|+.++++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999999854
No 264
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.01 E-value=0.012 Score=58.32 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEE
Q 047214 6 VNKIVEDVLKNLEKATVATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCF 85 (658)
Q Consensus 6 i~~~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~ 85 (658)
+.+++.++.+.+... .....|-..-+..|.+.+. .- ....++.|.|.+|+||||+|..++..+...-..++|
T Consensus 30 ~~~~~~~~~~~~~~~------~~~~~~i~TG~~~LD~~lg-Gl-~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~ 101 (315)
T 3bh0_A 30 IDEALVTVYEEIESA------DGNITGVPSGFTELDRMTY-GY-KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNL 101 (315)
T ss_dssp CHHHHHHHHHHHHTC------SSSCCSBCCSCHHHHHHHS-SB-CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHhc------cCCCCCccCChHHHHhhcC-CC-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 455666666655543 1223344444556666652 22 345689999999999999999999875443356777
Q ss_pred Ee
Q 047214 86 LS 87 (658)
Q Consensus 86 ~~ 87 (658)
++
T Consensus 102 ~s 103 (315)
T 3bh0_A 102 HS 103 (315)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.00 E-value=0.0025 Score=57.58 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=23.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
|.|+|+|++|+|||||++++..+..+.|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4588999999999999999988755444
No 266
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.99 E-value=0.022 Score=57.21 Aligned_cols=53 Identities=25% Similarity=0.240 Sum_probs=37.9
Q ss_pred cchHhhHHHHhc-ccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 34 NSRIEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 34 ~~~~~~l~~~l~-~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..-+..|...|. ..- ...+++.|+|.+|+||||||.+++..+...-..++|+.
T Consensus 45 ~TG~~~LD~~Lg~GGl-~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 45 STGSLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp CCSCHHHHHHTSSSSE-ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCHHHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 333456666664 221 34568999999999999999999988655445677776
No 267
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.89 E-value=0.0059 Score=56.54 Aligned_cols=40 Identities=25% Similarity=0.264 Sum_probs=29.8
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+++|.+.+.... ....+++|.|++|+|||||++.++....
T Consensus 8 ~~~~~~~~~~~~-~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQ-PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTC-CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344445444322 4567999999999999999999998755
No 268
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.82 E-value=0.03 Score=56.16 Aligned_cols=52 Identities=19% Similarity=0.169 Sum_probs=37.5
Q ss_pred chHhhHHHHhc-ccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 35 SRIEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 35 ~~~~~l~~~l~-~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.-+..|...|. ..- ...+++.|+|++|+||||||.+++..+...-..++|+.
T Consensus 44 TG~~~LD~~Lg~GGl-~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 44 TGSISLDVALGIGGL-PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CSCHHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCHHHHHHhccCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34556666665 222 34568999999999999999999987654445667766
No 269
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.81 E-value=0.15 Score=51.62 Aligned_cols=50 Identities=26% Similarity=0.232 Sum_probs=37.4
Q ss_pred CCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
...++|....+.++.+.+..-. .....|.|+|.+|+||+++|+.+...-.
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a-~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIA-KSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHH-TSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccccccchHHHHHHhhhhhhh-ccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 3568999888888777665332 2233477999999999999999987643
No 270
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.73 E-value=0.022 Score=55.44 Aligned_cols=34 Identities=9% Similarity=0.078 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccc--cCceEEEe
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFSSE--FEGRCFLS 87 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~~~--f~~~~~~~ 87 (658)
++.|+|++|+|||||+.+++...... -..++|+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999999999886544 34566765
No 271
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.71 E-value=0.011 Score=59.09 Aligned_cols=101 Identities=18% Similarity=0.127 Sum_probs=60.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccccc---chhhHhHHHhhhcCCCCchhHHHHhcCcceEEEE
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSET---GGGKILSEKLEVAGANIPHFTKERVRRMKVLIVL 129 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~Llvl 129 (658)
..++|.|+.|+|||||++.++.-+... ...+.+....+.... ..+..+. ..+......+...+..++-++++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~~~~~~i~~~~----ggg~~~r~~la~aL~~~p~ilil 246 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFKHHKNYTQLFF----GGNITSADCLKSCLRMRPDRIIL 246 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCSSCSSEEEEEC----BTTBCHHHHHHHHTTSCCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccccchhEEEEEe----CCChhHHHHHHHHhhhCCCEEEE
Confidence 479999999999999999999875432 455555533221100 0001110 01222255667778888999999
Q ss_pred eCCCCchhhhhhhcccCCCCCCC-EEEEEecchH
Q 047214 130 DDVNEVGQLEGLIGELDQFGPGS-RIVVTTRDKR 162 (658)
Q Consensus 130 Ddv~~~~~~~~l~~~l~~~~~~~-~ilvttR~~~ 162 (658)
|+....+.++.+ ..+. .|. .+++|+....
T Consensus 247 dE~~~~e~~~~l-~~~~---~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 247 GELRSSEAYDFY-NVLC---SGHKGTLTTLHAGS 276 (330)
T ss_dssp CCCCSTHHHHHH-HHHH---TTCCCEEEEEECSS
T ss_pred cCCChHHHHHHH-HHHh---cCCCEEEEEEcccH
Confidence 999886555543 3332 233 3677776544
No 272
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.64 E-value=0.0069 Score=54.01 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+|+|.|++|+||||+|+.+++...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999998754
No 273
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.60 E-value=0.024 Score=56.23 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=25.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
....+++|.|+.|+||||+++.++...+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999999876543
No 274
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.58 E-value=0.011 Score=57.56 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=25.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
....+|+|.|.+|+||||+|+.+...+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56789999999999999999999887553
No 275
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.55 E-value=0.011 Score=58.79 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhhhhcccCCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEE
Q 047214 6 VNKIVEDVLKNLEKATVATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCF 85 (658)
Q Consensus 6 i~~~~~~~~~~~~~~~~~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~ 85 (658)
|.+++.++++.+..... .......|-..-+..|.+.+..- ....++.|.|.+|+||||+|..++..+...-..++|
T Consensus 4 ~~~~~~~~~~~~~~~~~--~~~~~~~gi~TG~~~LD~~~gGl--~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~ 79 (338)
T 4a1f_A 4 IKEVLESAMDLITENQR--KGSLEVTGIPTGFVQLDNYTSGF--NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAV 79 (338)
T ss_dssp HHHHHHHHHHHHHHHHH--HTTTCCCSBCCSCHHHHHHHCSB--CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHh--cCCCCcCcccCCChHHHHHhcCC--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 44455555444433200 01334556666667777766422 344689999999999999999999985544445666
Q ss_pred Ee
Q 047214 86 LS 87 (658)
Q Consensus 86 ~~ 87 (658)
++
T Consensus 80 fS 81 (338)
T 4a1f_A 80 FS 81 (338)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 276
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.55 E-value=0.042 Score=56.75 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=35.5
Q ss_pred HhhHHHHhcccC------CCCeEEEEEEcCCCCcHHHHHHHHHHhhccc-cCceEEEe
Q 047214 37 IEQIKPFLCMDL------SDTVQIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFLS 87 (658)
Q Consensus 37 ~~~l~~~l~~~~------~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f~~~~~~~ 87 (658)
.+++.+++.... ...+++|.++|.+|+||||++..++..+... -..+..+.
T Consensus 79 ~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 79 RNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp HHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred HHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345666664321 1346899999999999999999999986654 34444444
No 277
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.55 E-value=0.0048 Score=62.41 Aligned_cols=52 Identities=17% Similarity=0.121 Sum_probs=36.9
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
++..-..++|.+..++.+...... .....+.|+|++|+|||++|+.+++...
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~---~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVD---PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHC---GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCchhccChHHHHHHHHHHhhC---CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 344446799999866554443332 1223488999999999999999999754
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.54 E-value=0.0076 Score=55.36 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
...+|+|.|++|+||||+++.+++...
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998763
No 279
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.51 E-value=0.0078 Score=54.46 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+.|+|+|++|+||||+|+.+++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998753
No 280
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.48 E-value=0.014 Score=53.68 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=24.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....+++|.|++|+||||+++.++....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999999999865
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.48 E-value=0.0085 Score=53.87 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 047214 53 QIVGIWGMGGIGKTTLATAIFN 74 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~ 74 (658)
.+|.|.|++|+||||+|+++++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999998
No 282
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=95.48 E-value=0.012 Score=58.10 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=30.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
++.++|+|+|-|||||||.+..++..+.+.-..+..+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56799999999999999999999888665544555555
No 283
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.48 E-value=0.048 Score=54.97 Aligned_cols=53 Identities=26% Similarity=0.211 Sum_probs=38.2
Q ss_pred cchHhhHHHHhc-ccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 34 NSRIEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 34 ~~~~~~l~~~l~-~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..-+..|...|. ..- ....++.|+|.+|+||||||.+++..+...-..++|+.
T Consensus 56 ~TG~~~LD~~Lg~GGl-~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 56 STGSLSLDLALGVGGI-PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CCSCHHHHHHTSSSSE-ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCHHHHHHhCCCCc-cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 334567777665 221 23458889999999999999999988654445677776
No 284
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.48 E-value=0.022 Score=57.19 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=34.2
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc------ccCceEEEe
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS------EFEGRCFLS 87 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~------~f~~~~~~~ 87 (658)
..|..+|...- ....++.|+|.+|+|||++|.+++..+.. .-..++|+.
T Consensus 109 ~~LD~~LgGGl-~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 109 QEFDKLLGGGI-ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHHTTSSB-CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hhHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 44555554222 45679999999999999999999987432 234566666
No 285
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.46 E-value=0.012 Score=58.77 Aligned_cols=28 Identities=25% Similarity=0.027 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
.-+.++|+|++|+|||||+..+++.+.+
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~ 200 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAY 200 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence 3457889999999999999999887543
No 286
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.45 E-value=0.01 Score=53.77 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=29.5
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
+..+..++... +..+.+.|+|++|+|||++|..+++.+..
T Consensus 45 ~~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 45 LGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45555555432 33456899999999999999999988643
No 287
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.43 E-value=0.32 Score=49.56 Aligned_cols=48 Identities=21% Similarity=0.140 Sum_probs=37.4
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..++|....++++.+.+..-...+. .|.|+|.+|+|||++|+.+...-
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~-~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAEC-PVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCS-CEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCC-CeEEecCCCcCHHHHHHHHHHhc
Confidence 4689998888888887765432333 45899999999999999988763
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.41 E-value=0.013 Score=53.19 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
.+|+|.|++|+||||+|+.+++....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998654
No 289
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.40 E-value=0.027 Score=55.16 Aligned_cols=36 Identities=19% Similarity=0.187 Sum_probs=28.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..++++.|.+|+||||++..++......-..+.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 679999999999999999999988655434444444
No 290
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.34 E-value=0.037 Score=58.13 Aligned_cols=29 Identities=38% Similarity=0.374 Sum_probs=24.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccC
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFE 81 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~ 81 (658)
+.+.|.|.+|+|||+++..++..+.....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 38999999999999999999998654433
No 291
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.30 E-value=0.049 Score=49.69 Aligned_cols=108 Identities=17% Similarity=0.127 Sum_probs=53.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc-----cccCceEEEeccccccccch--hhHhHHHhhhcCCC-CchhHHHH---hcC
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS-----SEFEGRCFLSDIRKNSETGG--GKILSEKLEVAGAN-IPHFTKER---VRR 122 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~-----~~f~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~-~~~~l~~~---l~~ 122 (658)
+..|+|.+|.|||+.|........ +.....+++..+.+...... ...........++. ..+.+.++ -.+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 678999999999999988765531 11112333332222111000 00000000001111 13455555 356
Q ss_pred cceEEEEeCCCCc--h---hh--hhhhcccC-CCCCCCEEEEEecch
Q 047214 123 MKVLIVLDDVNEV--G---QL--EGLIGELD-QFGPGSRIVVTTRDK 161 (658)
Q Consensus 123 ~~~LlvlDdv~~~--~---~~--~~l~~~l~-~~~~~~~ilvttR~~ 161 (658)
+..+||+|+++.. . .. -.++..+. ....+-.||++|...
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~ 133 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGP 133 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCG
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCH
Confidence 7899999998654 1 11 12223332 223566788888765
No 292
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.29 E-value=0.015 Score=51.37 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=24.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
..++++|.|.+|+||||++.+++...+..
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 45789999999999999999999986544
No 293
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.27 E-value=0.011 Score=53.74 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...+|.|.|++|+||||+|+.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999875
No 294
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.26 E-value=0.014 Score=55.40 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=28.9
Q ss_pred hHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 36 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 36 ~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.+.++.+-..... .....|+|.|++|+||||+|+.+++.+
T Consensus 14 ~~~~~~~~~~~~~-~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 14 LLNELKRRYACLS-KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHT-SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444333322 456789999999999999999999875
No 295
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.25 E-value=0.01 Score=53.01 Aligned_cols=22 Identities=32% Similarity=0.572 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.+|+|.|++|+||||+|+.+ +.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~ 23 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KE 23 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHH-HH
Confidence 37899999999999999999 44
No 296
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.24 E-value=0.016 Score=57.78 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=33.3
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc------cCceEEEe
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE------FEGRCFLS 87 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~------f~~~~~~~ 87 (658)
..+...|...- ....++.|+|.+|+|||++|.+++..+... -..++|+.
T Consensus 94 ~~LD~~L~GGl-~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 94 QALDGLLAGGI-ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hhHHHhcCCCC-CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 44555553211 234689999999999999999999875322 24566665
No 297
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.23 E-value=0.0099 Score=53.55 Aligned_cols=26 Identities=12% Similarity=0.413 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.++++|.|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999998754
No 298
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.23 E-value=0.011 Score=52.50 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+.++|+|.|+.|+||||+|+.+++...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999998754
No 299
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.23 E-value=0.016 Score=53.87 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
-|+|.|.+|||||+|+.++...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3668999999999999999875
No 300
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.18 E-value=0.031 Score=55.27 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=28.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFL 86 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~ 86 (658)
...++++|+|.+|+||||++..++......-..+.++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3568999999999999999999998866543344444
No 301
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.18 E-value=0.027 Score=55.55 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=34.9
Q ss_pred cccccchHhhHHHHhccc-CCCCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 30 LVGLNSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 30 ~vGR~~~~~~l~~~l~~~-~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
++|....+..+...+... ....+.+++|.|++|+||||+++.+.....
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555666665555432 225677999999999999999999987754
No 302
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.16 E-value=0.033 Score=46.93 Aligned_cols=52 Identities=21% Similarity=0.250 Sum_probs=27.8
Q ss_pred eEEecccCCC--CCCCCCCCCCccEEEecCCCccccccc-ccCCCCccEEeccCCC
Q 047214 427 YLHWDKYPLR--TLPSNFKPENLVELNLHFSKVEQLWEG-KKEAFKLKSINLSHCR 479 (658)
Q Consensus 427 ~L~l~~~~l~--~lp~~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~l~~~~ 479 (658)
.++.++++++ .+|..+. .+|+.|+|++|.|+.+|.. +..+.+|+.|+|.+|+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCC-cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 3445555555 5554431 3456666666666655544 4455556666555553
No 303
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.16 E-value=0.038 Score=59.57 Aligned_cols=33 Identities=24% Similarity=0.110 Sum_probs=26.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRC 84 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~ 84 (658)
.+++.|+|.+|+||||++..++..+...-..++
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl 236 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVG 236 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 468889999999999999999987655433333
No 304
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.15 E-value=0.0094 Score=53.65 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.++|+|+|++|+||||+++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999875
No 305
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.11 E-value=0.011 Score=53.73 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
...+++|.|++|+||||+++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999999876
No 306
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.10 E-value=0.021 Score=51.58 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
...+++|.|++|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4578999999999999999999998654
No 307
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.06 E-value=0.013 Score=53.18 Aligned_cols=27 Identities=19% Similarity=0.431 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..++++|.|++|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998754
No 308
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.06 E-value=0.023 Score=52.47 Aligned_cols=29 Identities=21% Similarity=0.270 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
...|+|.|++|+||||+|+.+++.....+
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 35789999999999999999999865433
No 309
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.04 E-value=0.017 Score=54.00 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=29.9
Q ss_pred hHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 36 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 36 ~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
..+.+.+.+.. .....|+|.|.+|+|||||+.+++.....
T Consensus 25 ~a~~~r~~~~~---~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 25 LADKNRKLLNK---HGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHH---TTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh---CCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 34455555543 45678889999999999999999987433
No 310
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.03 E-value=0.011 Score=52.65 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+|+|.|++|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998743
No 311
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.02 E-value=0.018 Score=59.38 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=38.6
Q ss_pred CCcccccchHhhHHHHhccc----------C-CCCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 28 NGLVGLNSRIEQIKPFLCMD----------L-SDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~----------~-~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
..++|.++..+.+...+... . ....+.+.++|++|+|||++|+.++......
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~ 77 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 35899998888887766321 0 0124568899999999999999999986543
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.00 E-value=0.014 Score=53.00 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=23.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
.+|+|.|++|+||||+++.+++...+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999997653
No 313
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.99 E-value=0.012 Score=54.22 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..+|+|.|++|+||||+|+.+++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 314
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.99 E-value=0.022 Score=55.51 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
....++.|.|++|+||||+|++++...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998865
No 315
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.99 E-value=0.014 Score=54.03 Aligned_cols=27 Identities=26% Similarity=0.423 Sum_probs=23.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
...+++|.|++|+||||+++.++....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999998754
No 316
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.98 E-value=0.015 Score=52.61 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
....|+|+|++|+||||+++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999986
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.97 E-value=0.011 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
...+++|.|++|+||||+++.++....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456889999999999999999998763
No 318
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.97 E-value=0.012 Score=53.42 Aligned_cols=28 Identities=32% Similarity=0.604 Sum_probs=23.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
++++|.|+.|+||||+++.+.......|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999998765444
No 319
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.96 E-value=0.015 Score=55.63 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+++|.|++|+||||+|++++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 320
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.91 E-value=0.019 Score=53.18 Aligned_cols=28 Identities=14% Similarity=0.283 Sum_probs=24.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
..+|+|.|+.|+||||+|+.+++.....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999986543
No 321
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.89 E-value=0.018 Score=52.89 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
....+|+|.|++|+||||+|+.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999874
No 322
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.86 E-value=0.016 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...+++|.|+.|+||||+++.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999999875
No 323
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.86 E-value=0.039 Score=57.35 Aligned_cols=54 Identities=19% Similarity=0.154 Sum_probs=36.6
Q ss_pred cccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 32 GLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 32 GR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
|-..-+..|.+.+. +- ....++.|.|.+|+||||+|.+++..+...-..++|++
T Consensus 179 gi~TG~~~LD~~lg-Gl-~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 179 GVPSGFTELDRMTY-GY-KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp SBCCSCHHHHHHHS-SB-CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CcCCCcHHHHhhcC-CC-CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 33334455555553 21 34568999999999999999999998554434566665
No 324
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.85 E-value=0.017 Score=52.53 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..+|+|.|++|+||||+|+.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998874
No 325
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.84 E-value=0.077 Score=54.59 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=29.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.+.+|.++|.+|+||||++..++..+.+.-..++.+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999999999999999988666544444444
No 326
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.81 E-value=0.019 Score=51.34 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...+++|.|++|+||||+++.++...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 35689999999999999999998864
No 327
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.80 E-value=0.066 Score=52.46 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=25.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
...+++|.|+.|+||||+++.++...+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999886543
No 328
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.80 E-value=0.02 Score=52.98 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...++|.|.|++|+||+|.|+.+++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999874
No 329
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.77 E-value=0.017 Score=53.10 Aligned_cols=24 Identities=29% Similarity=0.581 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.|+|.|+.|+||||+++.+++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 588999999999999999998754
No 330
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.77 E-value=0.019 Score=55.24 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..+|.|.|++|+||||+|+.+++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999998754
No 331
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.76 E-value=0.012 Score=52.96 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=18.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..+|+|.|++|+||||+|+.+++...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999988754
No 332
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.75 E-value=0.025 Score=52.73 Aligned_cols=42 Identities=26% Similarity=0.249 Sum_probs=30.9
Q ss_pred chHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 35 SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 35 ~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
+....+.+.+.. ...++++|.|.+|+|||||+.+++......
T Consensus 16 ~~~~~~~~~~~~---~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 16 RLAEKNREALRE---SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHH---HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhcc---cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 334455554443 457889999999999999999999875443
No 333
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.72 E-value=0.017 Score=52.70 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...+|+|.|++|+||||+|+.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999875
No 334
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.70 E-value=0.022 Score=51.40 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...|+|.|++|+||||+++.+++..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999864
No 335
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.70 E-value=0.02 Score=54.74 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....+|+|.|++|+||||+|+.+++...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999999999998743
No 336
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.64 E-value=0.021 Score=54.24 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=28.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..++.|.|++|+||||+|.+++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458999999999999999999887544445566665
No 337
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.61 E-value=0.061 Score=56.33 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=34.3
Q ss_pred hHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-ccCceEEEe
Q 047214 36 RIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGRCFLS 87 (658)
Q Consensus 36 ~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f~~~~~~~ 87 (658)
-+..|.+.+. .- ....++.|.|.+|+||||+|..++..+.. .-..++|++
T Consensus 189 G~~~LD~~~g-Gl-~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 189 GFTELDRMTS-GF-QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp SCHHHHHHHS-SB-CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CcHHHHhhcC-CC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3444555442 11 33468999999999999999999998553 333566665
No 338
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.59 E-value=0.021 Score=52.38 Aligned_cols=26 Identities=35% Similarity=0.394 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.+..+|+|.|+.|+||||+++.+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45789999999999999999999985
No 339
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.59 E-value=0.056 Score=56.42 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=35.1
Q ss_pred chHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc-ccCceEEEe
Q 047214 35 SRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGRCFLS 87 (658)
Q Consensus 35 ~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f~~~~~~~ 87 (658)
.-+..|.+.+ ..- ....++.|.|.+|+|||++|..++..+.. .-..++|++
T Consensus 185 tG~~~LD~~l-gGl-~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 185 TGFKELDQLI-GTL-GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp CSCHHHHHHH-CCC-CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCCHhhhhhc-CCc-CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3344555555 222 34468999999999999999999998543 334566665
No 340
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.58 E-value=0.02 Score=52.62 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..+++|.|+.|+|||||++.++...
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999998864
No 341
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.57 E-value=0.052 Score=54.79 Aligned_cols=42 Identities=29% Similarity=0.313 Sum_probs=30.6
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
..++.+.+.... .+..+|+|+|.+|+||||++..++......
T Consensus 65 ~~~~~~~~~~~~-~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDS-GNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGC-CCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhc-CCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 334444444322 567899999999999999999999875443
No 342
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.57 E-value=0.064 Score=55.40 Aligned_cols=26 Identities=31% Similarity=0.698 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
.++|+|.+|+|||||+..++......
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~ 178 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE 178 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc
Confidence 57899999999999999999875543
No 343
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.56 E-value=0.015 Score=52.48 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+|+|.|++|+||||+|+.+++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998743
No 344
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.56 E-value=0.019 Score=51.31 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.|+|.|++|+||||+|+.+++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998753
No 345
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.56 E-value=0.022 Score=51.64 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.+++|.|+.|+||||+++.++..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57899999999999999999863
No 346
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.54 E-value=0.026 Score=56.04 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=31.1
Q ss_pred cchHhhHHHHhccc-CCCCeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 34 NSRIEQIKPFLCMD-LSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 34 ~~~~~~l~~~l~~~-~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
+...+.+.+.+... ..+....+.|.|++|+||||+++.++....-.|
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 33344444444321 114456788999999999999999998754333
No 347
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.53 E-value=0.017 Score=51.47 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=22.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+|+|.|++|+||||+|+.+++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 348
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.52 E-value=0.035 Score=55.26 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=28.8
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+..|...|...- ....++.|+|.+|+|||++|.+++..+
T Consensus 84 ~~~LD~~l~GGl-~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 84 SSELDSVLGGGL-ESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp CHHHHHHTTSSE-ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ChhHHHhcCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345555553221 345799999999999999999999863
No 349
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.49 E-value=0.024 Score=52.00 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....|+|.|++|+||||+|+.+++...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999998753
No 350
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.48 E-value=0.019 Score=52.48 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..+|+|.|++|+||||+|+.+++...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998753
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.48 E-value=0.023 Score=51.62 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..+|+|.|++|+||||+|+.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
No 352
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.45 E-value=0.022 Score=52.37 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..+++|.|++|+||||+++.++...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998875
No 353
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.43 E-value=0.034 Score=54.89 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=29.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
...++|+|+|.||+||||+|..++..+.+.-..++.+.
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45788999999999999999999998665544455554
No 354
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.42 E-value=0.024 Score=50.14 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.|+|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998753
No 355
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.40 E-value=0.077 Score=54.57 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=29.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..+++.++|.+|+||||++..++..++..-..+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4689999999999999999999988665443444443
No 356
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.39 E-value=0.024 Score=52.44 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....+++|.|+.|+|||||++.++....
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999998654
No 357
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.38 E-value=0.062 Score=45.22 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=42.1
Q ss_pred EEEeecCcccCcchhhhcccCceecCCCCCCcccccceEEecccCCCCCCCCC--CCCCccEEEecCCCcc
Q 047214 390 LLKFYVPKLLGMSIEEQLSDSKVLLPDGLDYLPKNLRYLHWDKYPLRTLPSNF--KPENLVELNLHFSKVE 458 (658)
Q Consensus 390 ~L~l~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~~~i~ 458 (658)
.++.+++.+. ...+|.. +|.+|++|+|++|.|+.+|... .+.+|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~-----------~~~vP~~---lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLT-----------WASLPTA---FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCC-----------TTTSCSC---CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCc-----------cccCCCC---CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666652 0145543 4558999999999999999876 7899999999999654
No 358
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.36 E-value=0.023 Score=52.37 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
....+++|.|++|+||||+|+.++...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 346789999999999999999998753
No 359
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.33 E-value=0.032 Score=51.56 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=23.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
..+|+|.|+.|+||||+++.+++....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999998543
No 360
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.30 E-value=0.029 Score=56.03 Aligned_cols=26 Identities=31% Similarity=0.121 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
-+-+.|.|.+|+|||+|+..+++.+.
T Consensus 175 GQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 175 GQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp TCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHHHh
Confidence 45678999999999999999998754
No 361
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.29 E-value=0.042 Score=69.07 Aligned_cols=137 Identities=12% Similarity=0.066 Sum_probs=67.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchh-hHhHHHhhhcCCCCchhHHHHhcCcceEEEEeC
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGG-KILSEKLEVAGANIPHFTKERVRRMKVLIVLDD 131 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~l~~~l~~~~~LlvlDd 131 (658)
+-|.++|++|+|||++|+++.....+ +. .+.+. .+.......+ +.+.+.+............-.-.+++.++.+||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~-~~-~~~in-fsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDE 1344 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSL-YD-VVGIN-FSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDE 1344 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSS-CE-EEEEE-CCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEET
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCC-Cc-eEEEE-eecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecc
Confidence 56789999999999999888765422 22 22222 2221111111 222222211000000000000135678999999
Q ss_pred CCCch--------hhhhhhcccCCC-----C-------CCCEEEEEecchH------HHHhhcCCCceEEcCCCChHHHH
Q 047214 132 VNEVG--------QLEGLIGELDQF-----G-------PGSRIVVTTRDKR------VLEKFRGEKKIYRVNGLEFEEAF 185 (658)
Q Consensus 132 v~~~~--------~~~~l~~~l~~~-----~-------~~~~ilvttR~~~------~~~~~~~~~~~~~l~~L~~~~~~ 185 (658)
++... ..+-+...+... . .+..+|.++..+. +..+..+....+.++..+.++-.
T Consensus 1345 inmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~ 1424 (2695)
T 4akg_A 1345 INLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLS 1424 (2695)
T ss_dssp TTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHH
T ss_pred cccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHH
Confidence 74321 122222221110 1 1234555664431 23333355678999999998888
Q ss_pred HHHHHHh
Q 047214 186 EHFCNFA 192 (658)
Q Consensus 186 ~l~~~~~ 192 (658)
..|....
T Consensus 1425 ~I~~~il 1431 (2695)
T 4akg_A 1425 QIYEIYY 1431 (2695)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
No 362
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.23 E-value=0.02 Score=52.38 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+.++|+|++|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999988653
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.23 E-value=0.028 Score=51.11 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+|+|.|..|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999764
No 364
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.22 E-value=0.023 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
....|+|.|++|+||||+|+.+++..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999999874
No 365
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.22 E-value=0.02 Score=62.42 Aligned_cols=52 Identities=23% Similarity=0.307 Sum_probs=41.4
Q ss_pred CCCCCCCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 23 ATDSSNGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 23 ~~~~~~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
+|..-..++|.+..++.+...+... ..+.|+|++|+||||+|+.++......
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~g-----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQK-----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHTT-----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred cccccceEECchhhHhhccccccCC-----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 3444467899998888888877642 478999999999999999999976543
No 366
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.18 E-value=0.028 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.+|+|.|++|+||||+++.++...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998864
No 367
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.18 E-value=0.035 Score=50.40 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
-+-.+|+|+|+.|+||||+++.+++.
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999986
No 368
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.17 E-value=0.028 Score=50.35 Aligned_cols=24 Identities=38% Similarity=0.518 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.++|.|+.|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998753
No 369
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.16 E-value=0.025 Score=51.93 Aligned_cols=21 Identities=33% Similarity=0.446 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 047214 54 IVGIWGMGGIGKTTLATAIFN 74 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~ 74 (658)
+|+|.|+.|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 370
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.16 E-value=0.041 Score=52.04 Aligned_cols=50 Identities=14% Similarity=0.187 Sum_probs=33.6
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc------ccCceEEEe
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS------EFEGRCFLS 87 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~------~f~~~~~~~ 87 (658)
+..|..++...- ....++.|.|++|+|||||+..++..+.. .-..++|+.
T Consensus 10 ~~~LD~~l~ggi-~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 10 SKELDKLLQGGI-ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp CHHHHHHTTTSE-ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred ChHHHHhhcCCC-cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 345555553221 23468999999999999999999986322 124566665
No 371
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.15 E-value=0.029 Score=51.10 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
.|+|.|+.|+||||+++.+++....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5889999999999999999998643
No 372
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.14 E-value=0.028 Score=52.42 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
...|+|.|++|+||||+|+.+++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999998753
No 373
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.13 E-value=0.035 Score=53.05 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....++.|.|++|+||||+|+.++....
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4467899999999999999999998753
No 374
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.11 E-value=0.047 Score=53.58 Aligned_cols=37 Identities=22% Similarity=0.303 Sum_probs=28.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEE
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFL 86 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~ 86 (658)
....++.|+|++|+||||++..++......-..+.++
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 3467999999999999999999998866543334443
No 375
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.11 E-value=0.03 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998875
No 376
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.10 E-value=0.067 Score=48.38 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=54.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe-ccccccccchhhHhHHHhhhc----CCCCchhHHHHhcCcce
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS-DIRKNSETGGGKILSEKLEVA----GANIPHFTKERVRRMKV 125 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~l~~~----~~~~~~~l~~~l~~~~~ 125 (658)
..++..++|+.|.||||.+...+.+....-..++.+. ........ ..+.+.++.. .......+.+.+.+.-=
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~---~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~d 83 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSK---EDVVSHMGEKEQAVAIKNSREILKYFEEDTE 83 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC----------CEEECTTSCEEECEEESSSTHHHHHCCTTCS
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchH---HHHHhhcCCceeeEeeCCHHHHHHHHhccCC
Confidence 3468999999999999999999998654333333332 11110000 0011111100 00012344444444345
Q ss_pred EEEEeCCCCc--hhhhhhhcccCCCCCCCEEEEEecch
Q 047214 126 LIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRDK 161 (658)
Q Consensus 126 LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilvttR~~ 161 (658)
+|++|++.-. +.++.+. .+. ..+..||++.+..
T Consensus 84 vViIDEaqfl~~~~v~~l~-~l~--~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 84 VIAIDEVQFFDDEIVEIVN-KIA--ESGRRVICAGLDM 118 (191)
T ss_dssp EEEECSGGGSCTHHHHHHH-HHH--HTTCEEEEEECSB
T ss_pred EEEEECCCCCCHHHHHHHH-HHH--hCCCEEEEEeccc
Confidence 9999987433 2344332 222 1377899998853
No 377
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.09 E-value=0.044 Score=53.79 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
...+++|+|++|+||||++..++...+.. ...+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~-~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL-GKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT-TCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence 45799999999999999999999886544 2334443
No 378
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.06 E-value=0.038 Score=51.84 Aligned_cols=36 Identities=14% Similarity=0.179 Sum_probs=27.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..+++|.|++|+|||||+..++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 458999999999999999999977543333455554
No 379
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.06 E-value=0.03 Score=51.40 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=22.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...|+|.|+.|+||||+++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999876
No 380
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.02 E-value=0.024 Score=53.02 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....|+|.|++|+||||+|+.+++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999998754
No 381
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.01 E-value=0.032 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998864
No 382
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.00 E-value=0.03 Score=53.22 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...+++|.|+.|+||||+++.+++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999999774
No 383
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.00 E-value=0.03 Score=51.52 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 047214 53 QIVGIWGMGGIGKTTLATAIFN 74 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~ 74 (658)
.+++|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999986
No 384
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.99 E-value=0.042 Score=56.75 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.+++|+|+|.+|+||||++..++......-..+..+.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3569999999999999999999988655433445444
No 385
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.96 E-value=0.05 Score=55.56 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=32.9
Q ss_pred HhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc------ccCceEEEe
Q 047214 37 IEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS------EFEGRCFLS 87 (658)
Q Consensus 37 ~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~------~f~~~~~~~ 87 (658)
+..+.+.|...- ....++.|+|++|+|||||+..++-.... .-..++|+.
T Consensus 164 ~~~LD~lLgGGI-~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid 219 (400)
T 3lda_A 164 SKNLDTLLGGGV-ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYID 219 (400)
T ss_dssp CHHHHHHTTTSE-ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred ChhHHHHhcCCc-CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEe
Confidence 455666553221 23468999999999999999988754221 123466765
No 386
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.96 E-value=0.063 Score=51.46 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=27.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
....++++.|.||+||||++..++.... .-..+..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 3467899999999999999999998765 333343333
No 387
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=93.95 E-value=0.029 Score=55.32 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..++|+|.|+.|+||||||.++++++
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999874
No 388
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.94 E-value=0.035 Score=54.01 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.++++|.|++|+||||||.++++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4688999999999999999999874
No 389
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.92 E-value=0.03 Score=49.82 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHH
Q 047214 51 TVQIVGIWGMGGIGKTTLATAI 72 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~ 72 (658)
...+++|.|+.|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999999964
No 390
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.90 E-value=0.05 Score=48.41 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
.++++|.|.+|+||||++..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 568999999999999999999987543
No 391
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.88 E-value=0.041 Score=49.33 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
...+++|.|+.|+||||+++.++....
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346889999999999999999998753
No 392
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.81 E-value=0.035 Score=51.66 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=23.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
...+++|.|++|+|||||++.++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 456899999999999999999998754
No 393
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.80 E-value=0.038 Score=54.68 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+|+|.|++|+||||+|..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 394
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.79 E-value=0.033 Score=50.22 Aligned_cols=25 Identities=28% Similarity=0.198 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.+.|.|.|++|+||||||.+++++.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568899999999999999999873
No 395
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.79 E-value=0.04 Score=52.31 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
....+++|.|+.|+||||+++.++...
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998864
No 396
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.78 E-value=0.046 Score=47.81 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...+++|.|+.|+|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999875
No 397
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.77 E-value=0.044 Score=50.66 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....+++|.|++|+||||+++.++....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998754
No 398
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.76 E-value=0.041 Score=54.28 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....+++|.|+.|+|||||++.++.-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4568999999999999999999988754
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.72 E-value=0.043 Score=50.97 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFN 74 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~ 74 (658)
..+|+|.|+.|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 400
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.72 E-value=0.048 Score=53.01 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..++++|.|+.|+||||||.++++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 45789999999999999999999874
No 401
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.67 E-value=0.031 Score=52.03 Aligned_cols=25 Identities=36% Similarity=0.614 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..+++|.|+.|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4589999999999999999999865
No 402
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.66 E-value=0.055 Score=52.91 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhcc-ccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSS-EFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~-~f~~~~~~~ 87 (658)
..++++++|.+|+||||++..++..+.. ....+.++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4579999999999999999999988653 333444444
No 403
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.60 E-value=0.044 Score=53.89 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.++|+|.|+.|+||||+|..+++...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999998743
No 404
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.60 E-value=0.042 Score=53.41 Aligned_cols=25 Identities=28% Similarity=0.591 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHH
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFN 74 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~ 74 (658)
....+|+|.|++|+||||+|+.++.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999984
No 405
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.53 E-value=0.065 Score=51.60 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=27.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
++|+|.|.||+||||+|..++..+.+.-..+..+.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57788999999999999999998665544555554
No 406
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.52 E-value=0.041 Score=50.68 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
...+++|.|+.|+|||||++.++.-..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999988653
No 407
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.51 E-value=0.2 Score=45.52 Aligned_cols=33 Identities=15% Similarity=0.182 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhccccCceEEE
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFL 86 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~ 86 (658)
.|+|-|..|+||||.++.+++.+++....+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 377899999999999999999977655445443
No 408
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.48 E-value=0.055 Score=51.40 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=26.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc-cccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS-SEFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~-~~f~~~~~~~ 87 (658)
...+++|.|+.|+|||||++.++.... ..-..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 346899999999999999999985422 2234455544
No 409
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.47 E-value=0.18 Score=51.90 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=28.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh-ccccCceEEEecccc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF-SSEFEGRCFLSDIRK 91 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~-~~~f~~~~~~~~~~~ 91 (658)
-+-++|.|.+|+|||+|+..+++.+ +.+-+.++++- +.+
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~-iGE 192 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG-VGE 192 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEE-ESC
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEE-CCC
Confidence 4568899999999999999999985 33334455443 443
No 410
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.47 E-value=0.022 Score=52.71 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
+|+|.|+.|+||||+|+.+++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988643
No 411
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.45 E-value=0.045 Score=52.25 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..+|+|.|+.|+||||+++.+++..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999764
No 412
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.39 E-value=0.085 Score=52.47 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=31.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
...+++.+.|.||+||||+|..++....+....++.+.
T Consensus 14 ~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 14 RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 44688999999999999999999998776655566555
No 413
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.39 E-value=0.079 Score=53.02 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=30.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc--cccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS--SEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~--~~f~~~~~~~ 87 (658)
...+++.+.|.||+||||+|..++.... ..-..+..+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 4568999999999999999999998866 5555555555
No 414
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.35 E-value=0.087 Score=55.39 Aligned_cols=49 Identities=6% Similarity=-0.008 Sum_probs=34.9
Q ss_pred CcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 29 GLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 29 ~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
..+.|.+..+.+.+...... ....+|.+.|++|+||||+|+.++++...
T Consensus 373 ~~f~rpeV~~vLr~~~~~~~-~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNPPRP-KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTTSCHHHHHHHHHHSCCGG-GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccccChhhHHHHHHhccccc-ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34455555566666553211 34578999999999999999999999653
No 415
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.28 E-value=0.051 Score=49.95 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+|+|.|+.|+||||+++.++...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999999864
No 416
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.28 E-value=0.051 Score=51.14 Aligned_cols=27 Identities=26% Similarity=0.261 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....|+|.|++|+||||+|+.+++.+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999998753
No 417
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.26 E-value=0.051 Score=50.75 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 418
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.046 Score=49.52 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
....|+|.|.+|+|||||+.++...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4457889999999999999999875
No 419
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=93.25 E-value=0.039 Score=52.42 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..|+|.|++|+||||+++.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998753
No 420
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.20 E-value=0.073 Score=51.92 Aligned_cols=36 Identities=22% Similarity=0.408 Sum_probs=27.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.++|+|.|.||+||||+|..++..+.+.-..+..+.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD 37 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG 37 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 367888999999999999999998655444455444
No 421
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.19 E-value=0.056 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
+|.|.|++|+||+|.|+.+++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999874
No 422
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=93.19 E-value=0.03 Score=54.68 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+..+|+|.|.+|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999998643
No 423
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.15 E-value=0.055 Score=50.59 Aligned_cols=25 Identities=20% Similarity=0.422 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..+++|.|++|+||||+++.+++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999875
No 424
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.12 E-value=0.051 Score=50.47 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...|+|.|++|+||||+|+.+++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999875
No 425
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.11 E-value=0.052 Score=50.30 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.|+|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999875
No 426
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.03 E-value=0.18 Score=46.05 Aligned_cols=104 Identities=14% Similarity=0.045 Sum_probs=53.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe-ccccccccchhhHhHHHhhhcC----CCCchhHHHHhcCcce
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS-DIRKNSETGGGKILSEKLEVAG----ANIPHFTKERVRRMKV 125 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~----~~~~~~l~~~l~~~~~ 125 (658)
...+..++|..|.||||.+...+.+....-..++.+. .....+ .-..+.+.++... ......+.+.+.++--
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~---ge~~i~s~~g~~~~a~~~~~~~~~~~~~~~~~d 103 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRY---SEEDVVSHNGLKVKAVPVSASKDIFKHITEEMD 103 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--------------------CCEEECSSGGGGGGGCCSSCC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcc---hHHHHHhhcCCeeEEeecCCHHHHHHHHhcCCC
Confidence 4568889999999999999999998655444444433 111111 0011111111110 0112223333333334
Q ss_pred EEEEeCCCCc--hhhhhhhcccCCCCCCCEEEEEecc
Q 047214 126 LIVLDDVNEV--GQLEGLIGELDQFGPGSRIVVTTRD 160 (658)
Q Consensus 126 LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilvttR~ 160 (658)
+|++|++.-. +.++.+ ..+. ..+..||+|.++
T Consensus 104 vViIDEaQF~~~~~V~~l-~~l~--~~~~~Vi~~Gl~ 137 (214)
T 2j9r_A 104 VIAIDEVQFFDGDIVEVV-QVLA--NRGYRVIVAGLD 137 (214)
T ss_dssp EEEECCGGGSCTTHHHHH-HHHH--HTTCEEEEEECS
T ss_pred EEEEECcccCCHHHHHHH-HHHh--hCCCEEEEEecc
Confidence 9999997443 344333 3322 237789999985
No 427
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.01 E-value=0.085 Score=52.88 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=25.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
...+++|+|+.|+||||+++.++...+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 46799999999999999999999886543
No 428
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.97 E-value=0.06 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.+|.|.|++|+||||+|+.+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999985
No 429
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.89 E-value=0.033 Score=49.42 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
++++|+|.+|+|||||++.+..-+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47999999999999999999987554
No 430
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.82 E-value=0.097 Score=51.14 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..++++++|.+|+||||++..++......-..+.++.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4579999999999999999999988655433344433
No 431
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.77 E-value=0.065 Score=52.80 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....+++|.|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4457999999999999999999988754
No 432
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.75 E-value=0.084 Score=51.69 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccc-cCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSE-FEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~-f~~~~~~~ 87 (658)
...+++|.|++|+|||||+..++...... -..++|+.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34689999999999999999999886543 22455554
No 433
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.71 E-value=0.16 Score=61.76 Aligned_cols=49 Identities=27% Similarity=0.262 Sum_probs=35.6
Q ss_pred hhHHHHhc-ccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 38 EQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 38 ~~l~~~l~-~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..+..+|. ..- ...+.+.|+|++|+|||+||.+++......-..++|+.
T Consensus 1413 ~~LD~lLG~GGi-~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1413 LSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHHHSSSSE-ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHHhcCCCCc-cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34555554 211 34678999999999999999999998666555666665
No 434
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.69 E-value=0.13 Score=48.19 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
....|+|.|++|+||||+++.+++....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999998765
No 435
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.61 E-value=0.059 Score=48.73 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
+++|+|+.|+|||||++.++....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 588999999999999999998754
No 436
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.60 E-value=0.088 Score=49.90 Aligned_cols=37 Identities=27% Similarity=0.232 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHh-hccccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQ-FSSEFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~-~~~~f~~~~~~~ 87 (658)
...++.|.|.+|+|||++|.+++.. ..+.-..+++++
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 3458899999999999999998776 333334555554
No 437
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.59 E-value=0.043 Score=51.56 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHH-Hhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIF-NQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~-~~~ 76 (658)
..+++|.|+.|+||||+++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 653
No 438
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.54 E-value=0.2 Score=46.66 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
....|+|.|+.|+||||+++.+++.....
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 34689999999999999999999986653
No 439
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.53 E-value=0.058 Score=55.68 Aligned_cols=27 Identities=22% Similarity=0.278 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
....+|.|+|++|+||||+|++++++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999998764
No 440
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.53 E-value=0.069 Score=48.98 Aligned_cols=45 Identities=20% Similarity=0.229 Sum_probs=20.9
Q ss_pred CCcccccchHhhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 28 NGLVGLNSRIEQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 28 ~~~vGR~~~~~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
..--|+....+.+.+.... .+.--|++.|.+|+|||||+.++...
T Consensus 9 ~~~~~~~~~~~~m~~~~~~---~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 9 HHSSGLVPRGSHMENLYFQ---GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ------------------------CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cccCCcccchhHHHhHhhc---CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 3444555555666555443 33456779999999999999999875
No 441
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.48 E-value=0.26 Score=50.94 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=29.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh-ccccCceEEEecccc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF-SSEFEGRCFLSDIRK 91 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~-~~~f~~~~~~~~~~~ 91 (658)
-+-++|.|.+|+|||+|+.++++.+ +++-+.++++- +.+
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~-iGE 204 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGG-VGE 204 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEE-ESC
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEE-ccc
Confidence 4568899999999999999999985 34445566553 444
No 442
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.46 E-value=0.16 Score=50.87 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=29.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
....++.+.|.||+||||+|..++....+.-..++.+.
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45678889999999999999999988665544555554
No 443
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.45 E-value=0.11 Score=54.17 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEE
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFL 86 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~ 86 (658)
...+++|.|..|+||||+++.++..++.. ...+++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 46799999999999999999999876543 233444
No 444
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.45 E-value=0.1 Score=52.80 Aligned_cols=27 Identities=30% Similarity=0.181 Sum_probs=23.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...++++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445699999999999999999999764
No 445
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.45 E-value=0.14 Score=61.53 Aligned_cols=80 Identities=25% Similarity=0.286 Sum_probs=48.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccccchhhHhHHHhhh-------cCCCCchhHHHHh---
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSETGGGKILSEKLEV-------AGANIPHFTKERV--- 120 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~~~~l~~~l--- 120 (658)
...++.|+|++|+||||||.+++..+...-..++|++ ...... ++..+.++. ......+.+.+.+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS-~Ees~~----ql~A~~lGvd~~~L~i~~~~~leei~~~l~~l 805 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID-AEHALD----PIYARKLGVDIDNLLCSQPDTGEQALEICDAL 805 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC-TTSCCC----HHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe-ccchHH----HHHHHHcCCChhheEEecCCcHHHHHHHHHHH
Confidence 4568999999999999999999998665444566765 333222 111222221 1122233344433
Q ss_pred --cCcceEEEEeCCCCc
Q 047214 121 --RRMKVLIVLDDVNEV 135 (658)
Q Consensus 121 --~~~~~LlvlDdv~~~ 135 (658)
+.+.-++|+|.+...
T Consensus 806 v~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 806 ARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHTCCSEEEESCSTTC
T ss_pred HHccCCCEEEEechhhh
Confidence 245789999998543
No 446
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.44 E-value=0.089 Score=46.23 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
..|+|.|.+|+|||||..++...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56889999999999999999864
No 447
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.43 E-value=0.076 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.563 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.++|+|.|++|+||||||.++++...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 35889999999999999999998753
No 448
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.38 E-value=0.082 Score=49.99 Aligned_cols=26 Identities=19% Similarity=0.314 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
...|+|.|..|+||||+++.+++...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999998864
No 449
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.36 E-value=0.085 Score=46.22 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
-+-|.|.|.+|+||||+|.++.++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 346789999999999999999986
No 450
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=92.35 E-value=0.11 Score=50.21 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
..++.|+|++|+|||||+..++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45899999999999999999997644
No 451
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.26 E-value=0.14 Score=46.96 Aligned_cols=29 Identities=21% Similarity=0.535 Sum_probs=24.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHhhccccC
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQFSSEFE 81 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~~~~~f~ 81 (658)
+.|+|-|..|+||||+++.+++.+.+.++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 47889999999999999999998765444
No 452
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.25 E-value=0.076 Score=50.09 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.. .+++|.|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 789999999999999999998753
No 453
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.19 E-value=0.16 Score=46.80 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=24.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSE 79 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~ 79 (658)
...|+|.|+.|+||||+++.+++.....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4688999999999999999999987654
No 454
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.17 E-value=0.45 Score=58.00 Aligned_cols=57 Identities=23% Similarity=0.233 Sum_probs=41.3
Q ss_pred cccccchHhhHHHHhc-ccCCCCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 30 LVGLNSRIEQIKPFLC-MDLSDTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 30 ~vGR~~~~~~l~~~l~-~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..+-..-..+|...+. ..- ....++.|+|++|+||||||.+++..+...-..++|++
T Consensus 361 ~~~I~TG~~~LD~lLG~GGl-~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 361 VETISTGSLSLDIALGAGGL-PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp CCEECCSCHHHHHHHSSSSE-ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CceeeCCCHHHHHHhccCCc-cCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3444445667777775 211 34569999999999999999999998665545677776
No 455
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.17 E-value=0.09 Score=45.72 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
+-|++.|.+|+|||||+.++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999875
No 456
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.13 E-value=0.13 Score=54.09 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..++|+|+|.+|+||||++.+++..+...-..+..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd 136 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLIC 136 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4679999999999999999999988655433344444
No 457
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.09 E-value=0.24 Score=44.66 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.--|+|.|.+|+|||||++.+.....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 44678999999999999976665533
No 458
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.09 E-value=0.083 Score=47.84 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.-.++|.|.+|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457889999999999999999876
No 459
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.08 E-value=0.066 Score=48.10 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
-|+|.|.+|+|||||+..++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3779999999999999999863
No 460
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.05 E-value=0.13 Score=47.04 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=26.6
Q ss_pred EEEEEE-cCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 53 QIVGIW-GMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 53 ~vv~i~-G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
++|+|+ +.||+||||+|..++..+.+.-..++.+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 466666 78999999999999998666544555555
No 461
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=92.00 E-value=0.11 Score=49.31 Aligned_cols=33 Identities=27% Similarity=0.581 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 55 VGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
|+|.|.||+||||+|..++....+.-..++.+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 556999999999999999998766544555554
No 462
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=91.98 E-value=0.11 Score=51.54 Aligned_cols=36 Identities=31% Similarity=0.324 Sum_probs=29.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..++...|.||+||||+|..++....+.-..+..+.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 578889999999999999999998666555555555
No 463
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.95 E-value=0.087 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.-.++|.|.+|+|||||++.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999875
No 464
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.90 E-value=0.27 Score=53.42 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
.+++.|+|.+|+||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999998887654
No 465
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.88 E-value=0.077 Score=49.92 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.-.+++|.|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34689999999999999999988653
No 466
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=91.82 E-value=0.16 Score=50.93 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=28.5
Q ss_pred hhHHHHhcccCCCCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 38 EQIKPFLCMDLSDTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 38 ~~l~~~l~~~~~~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..+...|...- ....++.|+|++|+|||||+..++..+
T Consensus 118 ~~LD~lL~ggi-~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 118 KSLDKLLGGGI-ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp HHHHHHHTSSE-ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHHhcCCC-CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34444443221 356799999999999999999999875
No 467
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.81 E-value=0.077 Score=48.81 Aligned_cols=23 Identities=48% Similarity=0.309 Sum_probs=20.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.+++|.|+.|+|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998875
No 468
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=91.76 E-value=0.22 Score=49.71 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=24.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
.+..+++|.|.+|+||||++..++.....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 45788999999999999999999877543
No 469
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.68 E-value=0.17 Score=51.90 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
..+++.++|.+|+||||++..++......-..+..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 4678999999999999999999998765533444443
No 470
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.64 E-value=0.12 Score=46.50 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
...|++.|.+|+|||||+..+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457889999999999999999874
No 471
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.63 E-value=0.079 Score=49.44 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..+++|.|+.|+|||||++.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999988653
No 472
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.62 E-value=0.16 Score=51.24 Aligned_cols=89 Identities=16% Similarity=0.183 Sum_probs=49.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEeccccccc---cchhhHhH-HH--hhh-cCCCCchhHHHHhcCcc
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSE---TGGGKILS-EK--LEV-AGANIPHFTKERVRRMK 124 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~---~~~~~~l~-~~--l~~-~~~~~~~~l~~~l~~~~ 124 (658)
...++|+|+.|+|||||++.++..+... ...+.+....+... ...+..+. +. .+. ......+.++..+...+
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence 3579999999999999999999875432 44555543322110 00011111 10 000 11122455666666666
Q ss_pred eEEEEeCCCCchhhhhh
Q 047214 125 VLIVLDDVNEVGQLEGL 141 (658)
Q Consensus 125 ~LlvlDdv~~~~~~~~l 141 (658)
-.+++|++...+.++.+
T Consensus 254 d~~l~~e~r~~~~~~~l 270 (361)
T 2gza_A 254 TRILLAELRGGEAYDFI 270 (361)
T ss_dssp SEEEESCCCSTHHHHHH
T ss_pred CEEEEcCchHHHHHHHH
Confidence 77888888776655543
No 473
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.61 E-value=0.091 Score=59.17 Aligned_cols=154 Identities=13% Similarity=0.149 Sum_probs=80.0
Q ss_pred CCCCcccccchHhhHHHHhcccC---------C-CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEecccccccc
Q 047214 26 SSNGLVGLNSRIEQIKPFLCMDL---------S-DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLSDIRKNSET 95 (658)
Q Consensus 26 ~~~~~vGR~~~~~~l~~~l~~~~---------~-~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~~~~~~~~~ 95 (658)
.-...+|.+...+.+.+.+.... + ...+.+.++|++|+|||+||+.++......|-. +. ....
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~---v~-~~~l--- 547 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---IK-GPEL--- 547 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC---CC-CSSS---
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-chHh---
Confidence 34567888888888777664210 0 234568899999999999999999986544321 11 1110
Q ss_pred chhhHhHHHhhhcCCCCchhHHHHh-cCcceEEEEeCCCCch----------------hhhhhhcccCCC--CCCCEEEE
Q 047214 96 GGGKILSEKLEVAGANIPHFTKERV-RRMKVLIVLDDVNEVG----------------QLEGLIGELDQF--GPGSRIVV 156 (658)
Q Consensus 96 ~~~~~l~~~l~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~----------------~~~~l~~~l~~~--~~~~~ilv 156 (658)
.....+... .....+.+.. ...+.++++|+++... ....++..+... ..+..||.
T Consensus 548 -----~~~~~g~~~-~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~ 621 (806)
T 1ypw_A 548 -----LTMWFGESE-ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp -----TTCCTTTSS-HHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCC
T ss_pred -----hhhhcCccH-HHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEE
Confidence 000000000 0011112222 2345789999985320 123444443321 12334555
Q ss_pred EecchH-HHHhhcC---CCceEEcCCCChHHHHHHHHHHh
Q 047214 157 TTRDKR-VLEKFRG---EKKIYRVNGLEFEEAFEHFCNFA 192 (658)
Q Consensus 157 ttR~~~-~~~~~~~---~~~~~~l~~L~~~~~~~l~~~~~ 192 (658)
||.... +...+.. ....+.+...+.++-.++++.+.
T Consensus 622 tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l 661 (806)
T 1ypw_A 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTT
T ss_pred ecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHh
Confidence 665432 2222211 22466777777777777777665
No 474
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.56 E-value=0.11 Score=48.79 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
....+|+|.|+.|+||||+++.++...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 445689999999999999999999864
No 475
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.54 E-value=0.092 Score=45.76 Aligned_cols=22 Identities=27% Similarity=0.607 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 047214 54 IVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 54 vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
-|++.|.+|+|||||+.++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 476
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.51 E-value=0.17 Score=54.00 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=24.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhhcc
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQFSS 78 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~~~ 78 (658)
...+++|.|+.|+|||||++.++.....
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 4578999999999999999999998653
No 477
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.46 E-value=0.045 Score=59.26 Aligned_cols=50 Identities=16% Similarity=0.037 Sum_probs=34.4
Q ss_pred CCCcccccchHhhHHHHhcccCC--------CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 27 SNGLVGLNSRIEQIKPFLCMDLS--------DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 27 ~~~~vGR~~~~~~l~~~l~~~~~--------~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.+.++|.+...+.+.-.+..... .....|.++|++|+|||++|+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 35689998766665544443210 001158899999999999999998864
No 478
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.40 E-value=0.29 Score=48.79 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=24.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS 77 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~ 77 (658)
....+++|.|++|+|||||...+.....
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 4568999999999999999999987654
No 479
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=91.36 E-value=0.43 Score=44.07 Aligned_cols=102 Identities=14% Similarity=0.038 Sum_probs=54.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe-ccccccccchhhHhHHHhhhcC----CCCchhHHHHhcCcceE
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS-DIRKNSETGGGKILSEKLEVAG----ANIPHFTKERVRRMKVL 126 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~----~~~~~~l~~~l~~~~~L 126 (658)
..+..++|.-|.||||.+...+.+....-..++.+. ..+.... ..+.+.++... ......+.+.+ +.--+
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg----~~i~sr~G~~~~a~~i~~~~di~~~~-~~~dv 93 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS----SSFCTHDRNTMEALPACLLRDVAQEA-LGVAV 93 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC---------------CEEEEESSGGGGHHHH-TTCSE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch----HHHHhhcCCeeEEEecCCHHHHHHHh-ccCCE
Confidence 468889999999999988888888554433333333 2221111 11111111110 00112233333 23349
Q ss_pred EEEeCCCCchhhhhhhcccCCCCCCCEEEEEecc
Q 047214 127 IVLDDVNEVGQLEGLIGELDQFGPGSRIVVTTRD 160 (658)
Q Consensus 127 lvlDdv~~~~~~~~l~~~l~~~~~~~~ilvttR~ 160 (658)
+++|++.-.....++...+.. .|..||+|.++
T Consensus 94 ViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 94 IGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp EEESSGGGCTTHHHHHHHHHH--TTCEEEEECCS
T ss_pred EEEEchhhhhhHHHHHHHHHh--CCCEEEEEecc
Confidence 999997544445555554442 57789999987
No 480
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=91.35 E-value=0.17 Score=53.63 Aligned_cols=31 Identities=13% Similarity=0.169 Sum_probs=25.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhcccc
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEF 80 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f 80 (658)
....+|.++|++|+||||+|+++++...-.|
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 3467899999999999999999998754333
No 481
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.35 E-value=0.094 Score=49.37 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...+++|.|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998764
No 482
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.35 E-value=0.11 Score=45.38 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.--|+|.|.+|+|||||+.++...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 445789999999999999999875
No 483
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.31 E-value=0.11 Score=50.69 Aligned_cols=27 Identities=15% Similarity=0.278 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
....+++|+|+.|+|||||++.+..-+
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345689999999999999999999876
No 484
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=91.27 E-value=0.22 Score=49.47 Aligned_cols=38 Identities=26% Similarity=0.352 Sum_probs=29.9
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
+..+++.+.|.||+||||+|..++....+.-..+..+.
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34678889999999999999999998766555555554
No 485
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.22 E-value=0.12 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
-.+++|.|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 486
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.19 E-value=0.098 Score=50.10 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
...+++|.|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999988753
No 487
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.18 E-value=0.098 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
-.+++|.|+.|+|||||++.++.-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 458999999999999999998875
No 488
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.17 E-value=0.18 Score=51.12 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=29.0
Q ss_pred CCeEEEEEEc-CCCCcHHHHHHHHHHhhccccCceEEEe
Q 047214 50 DTVQIVGIWG-MGGIGKTTLATAIFNQFSSEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G-~~GvGKTtLa~~~~~~~~~~f~~~~~~~ 87 (658)
.+.++|+|+| .||+||||+|..++..+.+.-..++.+.
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4567888775 9999999999999998665544555555
No 489
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.17 E-value=0.11 Score=46.72 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHh
Q 047214 53 QIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 53 ~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
--|++.|.+|+|||||+.++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 35779999999999999999875
No 490
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.12 E-value=0.12 Score=45.85 Aligned_cols=26 Identities=38% Similarity=0.399 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.+...|+|.|.+|+|||||+.++...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999875
No 491
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.10 E-value=0.13 Score=44.84 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 047214 55 VGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 55 v~i~G~~GvGKTtLa~~~~~~ 75 (658)
|++.|.+|+|||||+.++...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999875
No 492
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=91.10 E-value=0.21 Score=50.12 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHhhc--cccCceEEEe
Q 047214 50 DTVQIVGIWGMGGIGKTTLATAIFNQFS--SEFEGRCFLS 87 (658)
Q Consensus 50 ~~~~vv~i~G~~GvGKTtLa~~~~~~~~--~~f~~~~~~~ 87 (658)
....+++..|.||+||||+|..++.... +.-..+..+.
T Consensus 16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 3457888899999999999999999876 5555566555
No 493
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.08 E-value=0.11 Score=49.03 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
.-.+++|.|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998753
No 494
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.04 E-value=0.13 Score=46.28 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.--|+|.|.+|+|||||+.++...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446779999999999999998875
No 495
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.03 E-value=0.12 Score=45.65 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.--|+|.|.+|+|||||+.++...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 446889999999999999998765
No 496
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.02 E-value=0.12 Score=51.15 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=23.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
..++++|+|+.|+|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 47899999999999999999999764
No 497
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.02 E-value=0.12 Score=49.56 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 51 TVQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 51 ~~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
.-.+++|.|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999874
No 498
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.97 E-value=0.12 Score=45.08 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQ 75 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~ 75 (658)
..-|++.|.+|+|||||+.++...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999999875
No 499
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.96 E-value=0.11 Score=49.08 Aligned_cols=25 Identities=44% Similarity=0.476 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
-.+++|.|+.|+|||||.+.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999988753
No 500
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.93 E-value=0.11 Score=49.91 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHhh
Q 047214 52 VQIVGIWGMGGIGKTTLATAIFNQF 76 (658)
Q Consensus 52 ~~vv~i~G~~GvGKTtLa~~~~~~~ 76 (658)
-.+++|.|+.|+|||||++.++.-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4589999999999999999998753
Done!