BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047217
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UES|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
pdb|3UES|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
Length = 478
Score = 263 bits (673), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 150/335 (44%), Positives = 187/335 (55%), Gaps = 32/335 (9%)
Query: 49 QLEWQLSSMALFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQWVHAAKSAGFNRVILT 108
QL WQ M FLHFG NT TD EWG G DP +FNP ++ QW+ A + G VILT
Sbjct: 23 QLAWQRMEMYAFLHFGMNTMTDREWGLGHEDPALFNPRNVDVDQWMDALVAGGMAGVILT 82
Query: 109 AKHHDGFCLWPSEYTDYSVKSSEWKNGTGDXXXXXXXXXXXXGVDLGLYLSPWDRHEPSY 168
KHHDGFCLWPS T ++V SS W+ G GD G+ G+YLSPWDR E SY
Sbjct: 83 CKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYLSPWDRTEESY 142
Query: 169 GKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGE--KDMEYFFDSWFSLIHQLQPRA 226
GK Y++FY+ Q+ ELLT+YG I VWLDGA GEG+ K Y +D ++++I LQP A
Sbjct: 143 GKGKAYDDFYVGQLTELLTQYGPIFSVWLDGANGEGKNGKTQYYDWDRYYNVIRSLQPDA 202
Query: 227 VIFSDVGPDTRWIGDEAGVAGSTCWSLFNR---------------SDAKIGGT------- 264
VI S GPD RW G+EAG WS+ R DA T
Sbjct: 203 VI-SVCGPDVRWAGNEAGHVRDNEWSVVPRRLRSAELTMEKSQQEDDASFATTVSSQDDD 261
Query: 265 -DPRYSQGGDPHGHDWVPAECDVSIRRGWFWHASEAPK--SAVELLDLYYKSVGRNCLLL 321
R + G W PAE D SIR GWF+H SE K SA +L DL+ +VG N LL
Sbjct: 262 LGSREAVAGYGDNVCWYPAEVDTSIRPGWFYHQSEDDKVMSADQLFDLWLSAVGGNSSLL 321
Query: 322 LNVPPNSLGLISAEDIQVLQ----EFSELRKSIFS 352
LN+PP+ GL++ D+Q L+ SE R+++ S
Sbjct: 322 LNIPPSPEGLLAEPDVQSLKGLGRRVSEFREALAS 356
>pdb|3MO4|A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Atcc 15697
pdb|3MO4|B Chain B, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Atcc 15697
Length = 480
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/335 (44%), Positives = 185/335 (55%), Gaps = 32/335 (9%)
Query: 49 QLEWQLSSMALFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQWVHAAKSAGFNRVILT 108
QL WQ FLHFG NT TD EWG G DP +FNP ++ QW A + G VILT
Sbjct: 25 QLAWQRXEXYAFLHFGXNTXTDREWGLGHEDPALFNPRNVDVDQWXDALVAGGXAGVILT 84
Query: 109 AKHHDGFCLWPSEYTDYSVKSSEWKNGTGDXXXXXXXXXXXXGVDLGLYLSPWDRHEPSY 168
KHHDGFCLWPS T ++V SS W+ G GD G+ G+YLSPWDR E SY
Sbjct: 85 CKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYLSPWDRTEESY 144
Query: 169 GKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGE--KDMEYFFDSWFSLIHQLQPRA 226
GK Y++FY+ Q+ ELLT+YG I VWLDGA GEG+ K Y +D ++++I LQP A
Sbjct: 145 GKGKAYDDFYVGQLTELLTQYGPIFSVWLDGANGEGKNGKTQYYDWDRYYNVIRSLQPDA 204
Query: 227 VIFSDVGPDTRWIGDEAGVAGSTCWSLFNR---------------SDAKIGGT------- 264
VI S GPD RW G+EAG WS+ R DA T
Sbjct: 205 VI-SVCGPDVRWAGNEAGHVRDNEWSVVPRRLRSAELTXEKSQQEDDASFATTVSSQDDD 263
Query: 265 -DPRYSQGGDPHGHDWVPAECDVSIRRGWFWHASEAPK--SAVELLDLYYKSVGRNCLLL 321
R + G W PAE D SIR GWF+H SE K SA +L DL+ +VG N LL
Sbjct: 264 LGSREAVAGYGDNVCWYPAEVDTSIRPGWFYHQSEDDKVXSADQLFDLWLSAVGGNSSLL 323
Query: 322 LNVPPNSLGLISAEDIQVLQ----EFSELRKSIFS 352
LN+PP+ GL++ D+Q L+ SE R+++ S
Sbjct: 324 LNIPPSPEGLLAEPDVQSLKGLGRRVSEFREALAS 358
>pdb|3UET|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT
COMPLEXED WITH LACTO-N- Fucopentaose Ii
pdb|3UET|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT
COMPLEXED WITH LACTO-N- Fucopentaose Ii
Length = 478
Score = 258 bits (660), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 148/335 (44%), Positives = 185/335 (55%), Gaps = 32/335 (9%)
Query: 49 QLEWQLSSMALFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQWVHAAKSAGFNRVILT 108
QL WQ M FLHFG NT TD EWG G DP +FNP ++ QW+ A + G VILT
Sbjct: 23 QLAWQRMEMYAFLHFGMNTMTDREWGLGHEDPALFNPRNVDVDQWMDALVAGGMAGVILT 82
Query: 109 AKHHDGFCLWPSEYTDYSVKSSEWKNGTGDXXXXXXXXXXXXGVDLGLYLSPWDRHEPSY 168
KHHDGFCLWPS T ++V SS W+ G GD G+ G+YLSPWDR E SY
Sbjct: 83 CKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKFGVYLSPWDRTEESY 142
Query: 169 GKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGE--KDMEYFFDSWFSLIHQLQPRA 226
GK Y++FY+ Q+ ELLT+YG I VWL GA GEG+ K Y +D ++++I LQP A
Sbjct: 143 GKGKAYDDFYVGQLTELLTQYGPIFSVWLAGANGEGKNGKTQYYDWDRYYNVIRSLQPDA 202
Query: 227 VIFSDVGPDTRWIGDEAGVAGSTCWSLFNR---------------SDAKIGGT------- 264
VI S GPD RW G+ AG WS+ R DA T
Sbjct: 203 VI-SVCGPDVRWAGNAAGHVRDNEWSVVPRRLRSAELTMEKSQQEDDASFATTVSSQDDD 261
Query: 265 -DPRYSQGGDPHGHDWVPAECDVSIRRGWFWHASEAPK--SAVELLDLYYKSVGRNCLLL 321
R + G W PAE D SIR GWF+H SE K SA +L DL+ +VG N LL
Sbjct: 262 LGSREAVAGYGDNVCWYPAEVDTSIRPGWFYHQSEDDKVMSADQLFDLWLSAVGGNSSLL 321
Query: 322 LNVPPNSLGLISAEDIQVLQ----EFSELRKSIFS 352
LN+PP+ GL++ D+Q L+ SE R+++ S
Sbjct: 322 LNIPPSPEGLLAEPDVQSLKGLGRRVSEFREALAS 356
>pdb|3EYP|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
pdb|3EYP|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
Length = 469
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 141/329 (42%), Positives = 181/329 (55%), Gaps = 19/329 (5%)
Query: 49 QLEWQLSSMALFLHFGPNTFTD-SEWGTGRADPRVFNPTRLNASQWVHAAKSAGFNRVIL 107
QLEW M F HFG NTF + G G+A +FNPT L+ QW+ K+AG IL
Sbjct: 14 QLEWYNREMIAFFHFGINTFEEYVNEGDGKASTAIFNPTALDCRQWMQTLKAAGIPAAIL 73
Query: 108 TAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDXXXXXXXXXXXXGVDLGLYLSPWDRHE-- 165
TAKH DGFCLWPS+YTDYSVK++ WKNG GD G+ G+YL P DRHE
Sbjct: 74 TAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVREFVDACEEYGLKAGIYLGPHDRHEHL 133
Query: 166 -PSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQP 224
P Y T Y E+Y Q+ EL++ YG+I E W DGA ++ + W+ ++ + QP
Sbjct: 134 SPLY-TTERYKEYYAHQLGELMSDYGKIWETWWDGAG--ADELTTPVYRHWYKIVREKQP 190
Query: 225 RAVIFSDVG----PDTRWIGDEAGVAGSTCWSLFNRSDAKIGGTDPRYSQG---GDPHGH 277
VIF D RW+G+EAG AG CW+ +D+ + +Y +G G G
Sbjct: 191 DCVIFGTKNSYPFADVRWMGNEAGEAGDPCWAT---TDSVAIRDEAQYYKGLNEGMLDGD 247
Query: 278 DWVPAECDVSIRRGWFWHASEAP--KSAVELLDLYYKSVGRNCLLLLNVPPNSLGLISAE 335
++PAE DVSIR WF+HA E KS EL D+Y SVGRN +LLLN PP+ GLI +
Sbjct: 248 AYIPAETDVSIRPSWFYHAEEDSRVKSVRELWDIYCTSVGRNSVLLLNFPPDRRGLIHST 307
Query: 336 DIQVLQEFSELRKSIFSYNLAENALVSAS 364
D + FS NL A V A+
Sbjct: 308 DSLHAALLKQGIDETFSTNLLRGAKVKAT 336
>pdb|3GZA|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.60 A Resolution
pdb|3GZA|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.60 A Resolution
Length = 443
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 104/342 (30%), Positives = 152/342 (44%), Gaps = 40/342 (11%)
Query: 49 QLEWQLSSMALFLHFGPNTFTDSEWGTG--RADP----RVFNPTRLNASQWVHAAKSAGF 102
QL+W + H+ + F +G G R +P +FNPT LN QWV AAK+AG
Sbjct: 14 QLKWHEAEXGAVFHYDLHVFDGIRYGQGNNRINPIEDYNIFNPTELNTDQWVQAAKAAGC 73
Query: 103 NRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDXXXXXXXXXXXXGVDLGLYLS-PW 161
+LTA H GF LW S+ Y +K+ +W++G GD G+ G+Y+ W
Sbjct: 74 KFAVLTATHETGFGLWQSDVNPYCLKAVKWRDGKGDIVRDFVNSCRKYGLQPGIYIGIRW 133
Query: 162 D----------RHEPSYGKTLE--YNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDME 209
+ E ++ + + Y + EL TRYG++ +W DG G D
Sbjct: 134 NSLLGIHNFKAEGEGAFARNRQAWYKRLCEKXVTELCTRYGDLYXIWFDG----GADDPR 189
Query: 210 YFFDSWFSLIHQLQPRAVIFSDVG-PDTRWIGDEAGVAGSTCWSLF-------NRSDAKI 261
++++ QP + + ++ D RW G E G CWS F R ++ I
Sbjct: 190 ADGPDVEPIVNKYQPNCLFYHNIDRADFRWGGSETGTVEYPCWSTFPVPCSHHKRIESSI 249
Query: 262 GGTDPRYSQGGDPHGHDWVPAECDVSIRRG-----WFWHASEAPK--SAVELLDLYYKSV 314
+ + GD +G WVPA D +R WFW + L D Y KSV
Sbjct: 250 DQLE--LLKHGDKNGRYWVPAXADTPLRGANGRHEWFWEPDDENNIYPLNTLXDKYEKSV 307
Query: 315 GRNCLLLLNVPPNSLGLISAEDIQVLQEFSELRKSIFSYNLA 356
GRN L+L + P+ GLI A D Q L+E + FS +A
Sbjct: 308 GRNATLILGLTPDPTGLIPAGDAQRLKEXGDEINRRFSSPIA 349
>pdb|2XIB|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XIB|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XIB|C Chain C, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XIB|D Chain D, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XII|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With An Extended
9- Fluorenone Iminosugar Inhibitor
pdb|2XII|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With An Extended
9- Fluorenone Iminosugar Inhibitor
Length = 453
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 13/165 (7%)
Query: 83 FNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDXXXX 142
+NPT+ +A +W AK G V +T KHH+GFCLWPS+YT Y+V ++ +K D
Sbjct: 76 WNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKR---DILGE 132
Query: 143 XXXXXXXXGVDLGLYLSPWDRHEPSYGKTLE----------YNEFYMAQMAELLTRYGEI 192
G+D+ Y S D P Y ++ + EF Q+ EL TRY +
Sbjct: 133 LVKAYNDEGIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTV 192
Query: 193 KEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTR 237
K+ W DG K ++ ++ +L P I S + D +
Sbjct: 193 KDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINSRLRADDK 237
>pdb|2WVV|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
pdb|2WVV|C Chain C, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
pdb|2WVV|D Chain D, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
Length = 450
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 13/165 (7%)
Query: 83 FNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDXXXX 142
+NPT+ +A +W AK G V +T KHH+GFCLWPS+YT Y+V ++ +K D
Sbjct: 73 WNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKR---DILGE 129
Query: 143 XXXXXXXXGVDLGLYLSPWDRHEPSYGKTLE----------YNEFYMAQMAELLTRYGEI 192
G+D+ Y S D P Y ++ + EF Q+ EL TRY +
Sbjct: 130 LVKAYNDEGIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTV 189
Query: 193 KEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTR 237
K+ W DG K ++ ++ +L P I S + D +
Sbjct: 190 KDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINSRLRADDK 234
>pdb|2WVV|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
Length = 450
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 13/165 (7%)
Query: 83 FNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDXXXX 142
+NPT+ +A +W AK G V +T KHH+GFCLWPS+YT Y+V ++ +K D
Sbjct: 73 WNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKR---DILGE 129
Query: 143 XXXXXXXXGVDLGLYLSPWDRHEPSYGKTLE----------YNEFYMAQMAELLTRYGEI 192
G+D+ Y S D P Y ++ + EF Q+ EL TRY +
Sbjct: 130 LVKAYNDEGIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTV 189
Query: 193 KEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTR 237
K+ W DG K ++ ++ +L P I S + D +
Sbjct: 190 KDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINSRLRADDK 234
>pdb|2WVT|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With A Novel
Iminosugar Fucosidase Inhibitor
pdb|2WVT|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With A Novel
Iminosugar Fucosidase Inhibitor
pdb|2WVU|A Chain A, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
pdb|2WVU|B Chain B, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
pdb|2WVU|C Chain C, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
pdb|2WVU|D Chain D, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
Length = 443
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 13/165 (7%)
Query: 83 FNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDXXXX 142
+NPT+ +A +W AK G V +T KHH+GFCLWPS+YT Y+V ++ +K D
Sbjct: 77 WNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKR---DILGE 133
Query: 143 XXXXXXXXGVDLGLYLSPWDRHEPSYGKTLE----------YNEFYMAQMAELLTRYGEI 192
G+D+ Y S D P Y ++ + EF Q+ EL TRY +
Sbjct: 134 LVKAYNDEGIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTV 193
Query: 193 KEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTR 237
K+ W DG K ++ ++ +L P I S + D +
Sbjct: 194 KDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINSRLRADDK 238
>pdb|2WVS|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
pdb|2WVS|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
pdb|2WVS|C Chain C, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
pdb|2WVS|D Chain D, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
Length = 443
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 13/165 (7%)
Query: 83 FNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDXXXX 142
+NPT+ +A +W AK G V +T KHH+GFCLWPS+YT Y+V ++ +K D
Sbjct: 77 WNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKR---DILGE 133
Query: 143 XXXXXXXXGVDLGLYLSPWDRHEPSYGKTLE----------YNEFYMAQMAELLTRYGEI 192
G+D+ Y S D P Y ++ + EF Q+ EL TRY +
Sbjct: 134 LVKAYNDEGIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTDNQLKELATRYPTV 193
Query: 193 KEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTR 237
K+ W DG K ++ ++ +L P I S + D +
Sbjct: 194 KDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINSRLRADDK 238
>pdb|1HL8|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
pdb|1HL8|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
pdb|1HL9|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With A Mechanism Based Inhibitor
pdb|1HL9|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With A Mechanism Based Inhibitor
Length = 449
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 120/287 (41%), Gaps = 55/287 (19%)
Query: 82 VFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDY-SVKSSEWKNGTGDXX 140
+F + + +W K AG VI T KHHDGFCLW ++YTD+ SVK ++ GD
Sbjct: 99 LFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGD-- 156
Query: 141 XXXXXXXXXXGVDLGLYLS---PWD-RHEP-------SYGK--TLEYNEFYMAQMAELLT 187
G+ G+Y S W EP SY + T EY ++ Q+ EL+
Sbjct: 157 --LAKAVREAGLRFGVYYSGGLDWRFTTEPIRYPEDLSYIRPNTYEYADYAYKQVMELVD 214
Query: 188 RYGEIKEV-WLD-GAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTRWIGDEAGV 245
Y + +V W D G +G++D++Y F+ + P + + RW
Sbjct: 215 LY--LPDVLWNDMGWPEKGKEDLKYL----FAYYYNKHPEGSV------NDRW------- 255
Query: 246 AGSTCWSLFNRSDAKIGGTDPRYSQGGDPHGHDWVPAECDVSIRRGWFWHASEAPKSAVE 305
G W F ++ + + GD G+ W E I + ++ +E P+ +
Sbjct: 256 -GVPHWD-FKTAEYHV-------NYPGDLPGYKW---EFTRGIGLSFGYNRNEGPEHMLS 303
Query: 306 LLDLYYK---SVGRNCLLLLNVPPNSLGLISAEDIQVLQEFSE-LRK 348
+ L Y V + LLLNV P G I + L E LRK
Sbjct: 304 VEQLVYTLVDVVSKGGNLLLNVGPKGDGTIPDLQXERLLGLGEWLRK 350
>pdb|2ZWY|A Chain A, Alpha-L-Fucosidase
pdb|2ZWY|B Chain B, Alpha-L-Fucosidase
pdb|2ZWZ|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
pdb|2ZWZ|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
pdb|2ZX5|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10
pdb|2ZX5|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10
pdb|2ZX6|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
pdb|2ZX6|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
pdb|2ZX7|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
pdb|2ZX7|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
pdb|2ZX8|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
pdb|2ZX8|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
pdb|2ZX9|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, B4
pdb|2ZX9|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, B4
pdb|2ZXA|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
pdb|2ZXA|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
pdb|2ZXB|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
pdb|2ZXB|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
pdb|2ZXD|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
pdb|2ZXD|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
Length = 455
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 120/287 (41%), Gaps = 55/287 (19%)
Query: 82 VFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDY-SVKSSEWKNGTGDXX 140
+F + + +W K AG VI T KHHDGFCLW ++YTD+ SVK ++ GD
Sbjct: 99 LFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGD-- 156
Query: 141 XXXXXXXXXXGVDLGLYLS---PWD-RHEP-------SYGK--TLEYNEFYMAQMAELLT 187
G+ G+Y S W EP SY + T EY ++ Q+ EL+
Sbjct: 157 --LAKAVREAGLRFGVYYSGGLDWRFTTEPIRYPEDLSYIRPNTYEYADYAYKQVMELVD 214
Query: 188 RYGEIKEV-WLD-GAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTRWIGDEAGV 245
Y + +V W D G +G++D++Y F+ + P + + RW
Sbjct: 215 LY--LPDVLWNDMGWPEKGKEDLKYL----FAYYYNKHPEGSV------NDRW------- 255
Query: 246 AGSTCWSLFNRSDAKIGGTDPRYSQGGDPHGHDWVPAECDVSIRRGWFWHASEAPKSAVE 305
G W F ++ + + GD G+ W E I + ++ +E P+ +
Sbjct: 256 -GVPHWD-FKTAEYHV-------NYPGDLPGYKW---EFTRGIGLSFGYNRNEGPEHMLS 303
Query: 306 LLDLYYK---SVGRNCLLLLNVPPNSLGLISAEDIQVLQEFSE-LRK 348
+ L Y V + LLLNV P G I + L E LRK
Sbjct: 304 VEQLVYTLVDVVSKGGNLLLNVGPKGDGTIPDLQKERLLGLGEWLRK 350
>pdb|1ODU|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With Fucose
pdb|1ODU|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With Fucose
Length = 449
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 120/287 (41%), Gaps = 55/287 (19%)
Query: 82 VFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDY-SVKSSEWKNGTGDXX 140
+F + + +W K AG VI T KHHDGFCLW ++YTD+ SVK ++ GD
Sbjct: 99 LFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGD-- 156
Query: 141 XXXXXXXXXXGVDLGLYLS---PWD-RHEP-------SYGK--TLEYNEFYMAQMAELLT 187
G+ G+Y S W EP SY + T EY ++ Q+ EL+
Sbjct: 157 --LAKAVREAGLRFGVYYSGGLDWRFTTEPIRYPEDLSYIRPNTYEYADYAYKQVMELVD 214
Query: 188 RYGEIKEV-WLD-GAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTRWIGDEAGV 245
Y + +V W D G +G++D++Y F+ + P + + RW
Sbjct: 215 LY--LPDVLWNDMGWPEKGKEDLKYL----FAYYYNKHPEGSV------NDRW------- 255
Query: 246 AGSTCWSLFNRSDAKIGGTDPRYSQGGDPHGHDWVPAECDVSIRRGWFWHASEAPKSAVE 305
G W F ++ + + GD G+ W E I + ++ +E P+ +
Sbjct: 256 -GVPHWD-FKTAEYHV-------NYPGDLPGYKW---EFTRGIGLSFGYNRNEGPEHMLS 303
Query: 306 LLDLYYK---SVGRNCLLLLNVPPNSLGLISAEDIQVLQEFSE-LRK 348
+ L Y V + LLLNV P G I + L E LRK
Sbjct: 304 VEQLVYTLVDVVSKGGNLLLNVGPKGDGTIPDLQKERLLGLGEWLRK 350
>pdb|2WSP|A Chain A, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
pdb|2WSP|B Chain B, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
Length = 449
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 119/287 (41%), Gaps = 55/287 (19%)
Query: 82 VFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDY-SVKSSEWKNGTGDXX 140
+F + + +W K AG VI T KHHDGFCLW ++YTD+ SVK ++ GD
Sbjct: 99 LFTAEKWDPQEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGD-- 156
Query: 141 XXXXXXXXXXGVDLGLYLS---PWD-RHEP-------SYGK--TLEYNEFYMAQMAELLT 187
G+ G+Y S W EP SY + T EY ++ Q+ EL+
Sbjct: 157 --LAKAVREAGLRFGVYYSGGLDWRFTTEPIRYPEDLSYIRPNTYEYADYAYKQVMELVD 214
Query: 188 RYGEIKEVWLDGA--KGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTRWIGDEAGV 245
Y + +V +G +G++D++Y F+ + P + + RW
Sbjct: 215 LY--LPDVLWNGMGWPEKGKEDLKYL----FAYYYNKHPEGSV------NDRW------- 255
Query: 246 AGSTCWSLFNRSDAKIGGTDPRYSQGGDPHGHDWVPAECDVSIRRGWFWHASEAPKSAVE 305
G W F ++ + + GD G+ W E I + ++ +E P+ +
Sbjct: 256 -GVPHWD-FKTAEYHV-------NYPGDLPGYKW---EFTRGIGLSFGYNRNEGPEHMLS 303
Query: 306 LLDLYYK---SVGRNCLLLLNVPPNSLGLISAEDIQVLQEFSE-LRK 348
+ L Y V + LLLNV P G I + L E LRK
Sbjct: 304 VEQLVYTLVDVVSKGGNLLLNVGPKGDGTIPDLQKERLLGLGEWLRK 350
>pdb|4A61|A Chain A, Parm From Plasmid R1 In Complex With Amppnp
Length = 326
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 49 QLEWQLSSMALFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQW 93
+L+WQ S + H PN+F EW D +VFN T LN Q+
Sbjct: 19 KLQWQESDGTIKQHISPNSFK-REWAVSFGDKKVFNYT-LNGEQY 61
>pdb|1MWK|A Chain A, Parm From Plasmid R1 Apo Form
pdb|1MWK|B Chain B, Parm From Plasmid R1 Apo Form
pdb|1MWM|A Chain A, Parm From Plasmid R1 Adp Form
pdb|1MWM|B Chain B, Parm From Plasmid R1 Adp Form
pdb|2QU4|A Chain A, Model For Bacterial Parm Filament
pdb|2ZGY|A Chain A, Parm With Gdp
pdb|2ZGY|B Chain B, Parm With Gdp
pdb|2ZGZ|A Chain A, Parm With Gmppnp
pdb|2ZGZ|B Chain B, Parm With Gmppnp
pdb|2ZHC|A Chain A, Parm Filament
pdb|3IKU|A Chain A, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|B Chain B, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|C Chain C, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|D Chain D, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|E Chain E, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|F Chain F, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|G Chain G, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|H Chain H, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|I Chain I, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|J Chain J, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|K Chain K, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKU|L Chain L, Structural Model Of Parm Filament In Closed State From
Cryo- Em
pdb|3IKY|A Chain A, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|B Chain B, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|C Chain C, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|D Chain D, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|E Chain E, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|F Chain F, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|G Chain G, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|H Chain H, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|I Chain I, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|J Chain J, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|K Chain K, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|3IKY|L Chain L, Structural Model Of Parm Filament In The Open State By
Cryo- Em
pdb|4A6J|A Chain A, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|B Chain B, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|C Chain C, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|D Chain D, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|E Chain E, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|F Chain F, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|G Chain G, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|H Chain H, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|I Chain I, Structural Model Of Parm Filament Based On Cryoem Map
pdb|4A6J|J Chain J, Structural Model Of Parm Filament Based On Cryoem Map
Length = 320
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 49 QLEWQLSSMALFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQW 93
+L+WQ S + H PN+F EW D +VFN T LN Q+
Sbjct: 13 KLQWQESDGTIKQHISPNSFK-REWAVSFGDKKVFNYT-LNGEQY 55
>pdb|4A62|A Chain A, Parm From R1 Plasmid In Complex With Peptide From C-
Terminus Of Parr
pdb|4A62|B Chain B, Parm From R1 Plasmid In Complex With Peptide From C-
Terminus Of Parr
Length = 320
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 49 QLEWQLSSMALFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQW 93
+L+WQ S + H PN+F EW D +VFN T LN Q+
Sbjct: 13 KLQWQESDGTIKQHISPNSFK-REWAVSFGDKKVFNYT-LNGEQY 55
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 160 PWDRHEPSY-GKTLEYNEFYMAQMAELLTRY 189
P DRH P+ GK L + + ++ Q+ ELLT +
Sbjct: 206 PVDRHIPALAGKVLRFQKAFLTQLDELLTEH 236
>pdb|1N3L|A Chain A, Crystal Structure Of A Human Aminoacyl-Trna Synthetase
Cytokine
pdb|1Q11|A Chain A, Crystal Structure Of An Active Fragment Of Human
Tyrosyl-Trna Synthetase With Tyrosinol
Length = 372
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 278 DWVPAECDVSIRRGWFWHASEAPKSAVELLDL---YYKSVGRNCLLLLNVPPNSLGLISA 334
D++ A C+V+I + K+ ELL+L YY++V + L + VP L I
Sbjct: 61 DFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKG 120
Query: 335 EDIQVLQEFS 344
D Q+ +E++
Sbjct: 121 TDYQLSKEYT 130
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 189 YGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTRWIGDE 242
Y +I + WL+ E+ + F +WF L+H+ D+GP TR++G E
Sbjct: 411 YLKISQRWLE----HPEELADAFAKAWFKLLHR---------DLGPTTRYLGPE 451
>pdb|3ACF|A Chain A, Crystal Structure Of Carbohydrate-Binding Module Family 28
From Clostridium Josui Cel5a In A Ligand-Free Form
pdb|3ACG|A Chain A, Crystal Structure Of Carbohydrate-Binding Module Family 28
From Clostridium Josui Cel5a In Complex With Cellobiose
pdb|3ACH|A Chain A, Crystal Structure Of Carbohydrate-Binding Module Family 28
From Clostridium Josui Cel5a In Complex With
Cellotetraose
pdb|3ACI|A Chain A, Crystal Structure Of Carbohydrate-Binding Module Family 28
From Clostridium Josui Cel5a In Complex With
Cellopentaose
Length = 203
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 274 PHGHDWVPAECDVSIRRGWFWHASEAPKSAVELLD 308
P G +P+ + S R+GW W A+ +SA+ + D
Sbjct: 22 PIGKATLPSTFEDSTRQGWAWDATSGVQSALTIKD 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,416,849
Number of Sequences: 62578
Number of extensions: 477188
Number of successful extensions: 1012
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 29
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)