BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047217
(364 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GW72|FUCO1_ARATH Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FUC1 PE=1 SV=2
Length = 506
Score = 576 bits (1485), Expect = e-164, Method: Compositional matrix adjust.
Identities = 266/330 (80%), Positives = 297/330 (90%)
Query: 35 KPPPLPILPLPSSPQLEWQLSSMALFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQWV 94
KP P PILPLPSS QL+WQL SMA+FLHFGPNTFTDSEWGTG+A+P +FNPT LNASQWV
Sbjct: 28 KPHPCPILPLPSSQQLQWQLGSMAMFLHFGPNTFTDSEWGTGKANPSIFNPTHLNASQWV 87
Query: 95 HAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL 154
AK +GF+RVILTAKHHDGFCLWPSEYTDYSVKSS+W+NG GDVVAELA AAKEAG+ L
Sbjct: 88 QIAKDSGFSRVILTAKHHDGFCLWPSEYTDYSVKSSQWRNGAGDVVAELASAAKEAGIGL 147
Query: 155 GLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDS 214
GLYLSPWDRHE YGKTLEYNEFY++QM ELLT+YGEIKEVWLDGAKG+GEKDMEYFFD+
Sbjct: 148 GLYLSPWDRHEQCYGKTLEYNEFYLSQMTELLTKYGEIKEVWLDGAKGDGEKDMEYFFDT 207
Query: 215 WFSLIHQLQPRAVIFSDVGPDTRWIGDEAGVAGSTCWSLFNRSDAKIGGTDPRYSQGGDP 274
WFSLIHQLQP+AVIFSD GPD RWIGDEAG+AGSTCWSLFNR++AKIG T+P YSQ GD
Sbjct: 208 WFSLIHQLQPKAVIFSDAGPDVRWIGDEAGLAGSTCWSLFNRTNAKIGDTEPSYSQEGDG 267
Query: 275 HGHDWVPAECDVSIRRGWFWHASEAPKSAVELLDLYYKSVGRNCLLLLNVPPNSLGLISA 334
+G DWVPAECDVSIR GWFWHASE+PK AV+LLD+YY SVGRNCL LLNVPPNS GLIS
Sbjct: 268 YGQDWVPAECDVSIRPGWFWHASESPKPAVQLLDIYYNSVGRNCLFLLNVPPNSSGLISE 327
Query: 335 EDIQVLQEFSELRKSIFSYNLAENALVSAS 364
+DI+VL+EFSE++ SIFS NLA A V++S
Sbjct: 328 QDIKVLEEFSEMKNSIFSNNLARKAFVNSS 357
>sp|Q7XUR3|FUCO1_ORYSJ Putative alpha-L-fucosidase 1 OS=Oryza sativa subsp. japonica
GN=Os04g0560400 PE=3 SV=2
Length = 517
Score = 480 bits (1235), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/319 (72%), Positives = 262/319 (82%), Gaps = 1/319 (0%)
Query: 46 SSPQLEWQLSSMALFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQWVHAAKSAGFNRV 105
S QL+WQLS MALFLHFGPNTFTDSEWG+ RADP VF P+ L+A QW AA + GF RV
Sbjct: 41 SYAQLQWQLSEMALFLHFGPNTFTDSEWGSVRADPAVFAPSALDAGQWARAAAAGGFGRV 100
Query: 106 ILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHE 165
+LTAKHHDGFCLWPS T+YSV +S WK G GDVV ELA AA+ G+ LGLYLSPWDRHE
Sbjct: 101 VLTAKHHDGFCLWPSALTNYSVAASPWKGGAGDVVGELAAAARAEGIGLGLYLSPWDRHE 160
Query: 166 PSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPR 225
P YG T+ YNE Y+ QM ELLTRYG+++EVWLDGAKGEG KDM+Y FD+WF+LIHQLQ R
Sbjct: 161 PVYGDTVAYNEHYLGQMTELLTRYGDVEEVWLDGAKGEG-KDMDYMFDAWFALIHQLQQR 219
Query: 226 AVIFSDVGPDTRWIGDEAGVAGSTCWSLFNRSDAKIGGTDPRYSQGGDPHGHDWVPAECD 285
VIFSD GPDTRW+GDEAGVAG TCWS FN+S IG P YS+ GDP G DWVPAECD
Sbjct: 220 VVIFSDAGPDTRWVGDEAGVAGYTCWSPFNKSTVTIGHIIPEYSRCGDPFGQDWVPAECD 279
Query: 286 VSIRRGWFWHASEAPKSAVELLDLYYKSVGRNCLLLLNVPPNSLGLISAEDIQVLQEFSE 345
VSIR GWFWHASE PK+A LLD+YYKSVGRNCLL+LNVPPNS GLIS ED+QVLQEF+E
Sbjct: 280 VSIRPGWFWHASEKPKNATTLLDIYYKSVGRNCLLILNVPPNSSGLISTEDMQVLQEFTE 339
Query: 346 LRKSIFSYNLAENALVSAS 364
+R++IFS N A NA V+AS
Sbjct: 340 IRQTIFSQNFAANATVTAS 358
>sp|P49713|FUCO_CAEEL Putative alpha-L-fucosidase OS=Caenorhabditis elegans GN=W03G11.3
PE=3 SV=2
Length = 482
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 120/274 (43%), Gaps = 39/274 (14%)
Query: 74 GTGRAD-PRVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEW 132
GT AD + F NA+Q+ K++G + T+KHH+GF +WPS T ++ S +
Sbjct: 82 GTTYADFAKDFTAEYFNANQFAETVKTSGARYFVFTSKHHEGFTMWPSR-TSWNWNSMD- 139
Query: 133 KNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYN-EFY-----MAQMAELL 186
D+V EL A K+ V GLY S ++ P + ++N FY QM +++
Sbjct: 140 IGPKRDIVGELRDAFKKTDVHFGLYFSQFEWFHPMFLDDGKFNTTFYPEQVSYPQMIDIV 199
Query: 187 TRYGEIKEVWLDGAKGEGEKDMEYF----FDSWFSLIHQLQPRAVIFSDVGPDTRWIGDE 242
T+Y + VW D GE +K +Y+ F +W ++ + V+ + RW
Sbjct: 200 TKYNP-EVVWSD---GEWDKSDDYWKAKEFLAWLYNSSPVKDQVVV------NDRWGTGT 249
Query: 243 AGVAGSTCWSLFNRSDAKIGGT--DPRYSQGGDPHGHDWVPAECDVSIRRGWFWHASEAP 300
G G SD G + ++ H W RR ASE
Sbjct: 250 MGKHG----GFMTYSDHYDPGKLLEKKWENCMTLDKHSW-------GNRRD--MKASEV- 295
Query: 301 KSAVELLDLYYKSVGRNCLLLLNVPPNSLGLISA 334
+A E+++ +++ N LLLNV PN G I A
Sbjct: 296 NTAYEIIEQLARTIACNGNLLLNVGPNMHGQIPA 329
>sp|P10901|FUCO_DICDI Alpha-L-fucosidase OS=Dictyostelium discoideum GN=alfA PE=3 SV=1
Length = 461
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 20/147 (13%)
Query: 63 FGPNTFTDSEWGTGRADPRVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEY 122
FG N FT ++ R D R+F+ A++W + +G V+LT+KHH+G+ LW SE
Sbjct: 87 FGAN-FTYQDF-VSRFDCRLFD-----ANEWASIIEKSGAKYVVLTSKHHEGYTLWNSEQ 139
Query: 123 TDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSY------GKT----L 172
+ ++ S E G D+V EL + K G+ +GLY S ++ P Y GK +
Sbjct: 140 S-WNWNSVETGPGI-DIVGELTKSVKNMGLHMGLYHSLFEWFNPLYLADAETGKNPTTQV 197
Query: 173 EYNEFYMAQMAELLTRYGEIKEVWLDG 199
+E M Q+ +++T Y E + +W DG
Sbjct: 198 YVDEILMKQLKDIVTTY-EPELIWADG 223
>sp|Q9VTJ4|FUCO_DROME Putative alpha-L-fucosidase OS=Drosophila melanogaster GN=Fuca PE=2
SV=2
Length = 494
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 83 FNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAE 142
F NA++W K +G V+LT+KHHDGF LWPS+ Y S + D+V E
Sbjct: 107 FTAELFNATKWALLFKDSGARYVVLTSKHHDGFTLWPSK-NSYGWNSMD-VGPKRDIVKE 164
Query: 143 LALAA-KEAGVDLGLYLSPWDRHEP 166
LA A KE+ + GLY S ++ P
Sbjct: 165 LAAAIRKESDLRFGLYYSLFEWFNP 189
>sp|C3YWU0|FUCO_BRAFL Alpha-L-fucosidase OS=Branchiostoma floridae GN=BRAFLDRAFT_56888
PE=3 SV=2
Length = 449
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 69/128 (53%), Gaps = 14/128 (10%)
Query: 82 VFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTG-DVV 140
+F N QW +++G V+LT+KHH+GF WPS+Y+ ++ S + NG D+V
Sbjct: 91 MFTAEWYNPLQWAEVLQASGAKYVVLTSKHHEGFTNWPSKYS-WNWNSVD--NGPHRDLV 147
Query: 141 AELALAAK-EAGVDLGLYLSPWDRHEPSYGK-------TLEYN-EFYMAQMAELLTRYGE 191
ELA+A + + + GLY S ++ P Y K T +Y + +A++ EL+ Y
Sbjct: 148 GELAMAIRNNSDLHFGLYYSLFEWFHPLYLKDKQNKWTTQDYTKDVGLAELYELVNAY-H 206
Query: 192 IKEVWLDG 199
+ VW DG
Sbjct: 207 PEVVWSDG 214
>sp|Q99KR8|FUCO2_MOUSE Plasma alpha-L-fucosidase OS=Mus musculus GN=Fuca2 PE=2 SV=1
Length = 461
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 20/134 (14%)
Query: 82 VFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEW----KNGTG 137
+F NA+QW +++G V+ T+KHH+GF +W S+ +S W +
Sbjct: 100 LFTAKYFNANQWADILQASGAKYVVFTSKHHEGFTMWGSD------RSWNWNAVDEGPKR 153
Query: 138 DVVAELALAAK-EAGVDLGLYLSPWDRHEPSY----GKTLEYNEF----YMAQMAELLTR 188
D+V EL +A + G+ GLY S ++ P + + + F + ++ EL+ R
Sbjct: 154 DIVKELEVAVRNRTGLHFGLYYSLFEWFHPLFLEDQSSSFQKQRFPVSKTLPELYELVNR 213
Query: 189 YGEIKEVWLDGAKG 202
Y + + +W DG G
Sbjct: 214 Y-QPEVLWSDGDGG 226
>sp|Q6AYS4|FUCO2_RAT Plasma alpha-L-fucosidase OS=Rattus norvegicus GN=Fuca2 PE=2 SV=1
Length = 459
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 68/130 (52%), Gaps = 12/130 (9%)
Query: 82 VFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVA 141
+F NA+QW +++G V+LT+KHH+GF LW S ++ ++ + + + D+V
Sbjct: 98 LFTAKYFNANQWADLLQASGAKYVVLTSKHHEGFTLWGSAHS-WNWNAVD-EGPKRDIVK 155
Query: 142 ELALAAK-EAGVDLGLYLSPWDRHEPSY----GKTLEYNEFYMA----QMAELLTRYGEI 192
EL +A + + GLY S ++ P + + F +A ++ EL+T+Y +
Sbjct: 156 ELEVAVRNRTDLHFGLYYSLFEWFHPLFLEDQSSAFQKQRFPVAKTLPELYELVTKY-QP 214
Query: 193 KEVWLDGAKG 202
+ +W DG G
Sbjct: 215 EVLWSDGDGG 224
>sp|Q9BTY2|FUCO2_HUMAN Plasma alpha-L-fucosidase OS=Homo sapiens GN=FUCA2 PE=1 SV=2
Length = 467
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 12/130 (9%)
Query: 82 VFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVA 141
+F NA+QW +++G ++LT+KHH+GF LW SEY+ ++ + + + D+V
Sbjct: 106 LFTAKFFNANQWADIFQASGAKYIVLTSKHHEGFTLWGSEYS-WNWNAID-EGPKRDIVK 163
Query: 142 ELALAAK-EAGVDLGLYLSPWDRHEPSY----GKTLEYNEF----YMAQMAELLTRYGEI 192
EL +A + + GLY S ++ P + + +F + ++ EL+ Y +
Sbjct: 164 ELEVAIRNRTDLRFGLYYSLFEWFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNY-QP 222
Query: 193 KEVWLDGAKG 202
+ +W DG G
Sbjct: 223 EVLWSDGDGG 232
>sp|Q2KIM0|FUCO_BOVIN Tissue alpha-L-fucosidase OS=Bos taurus GN=FUCA1 PE=2 SV=1
Length = 468
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 17/143 (11%)
Query: 65 PNTFTDSEWGTGRADPRVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTD 124
P F+ +++G R R FNP W K+AG V+LT KHH+G+ WPS
Sbjct: 101 PPDFSYADFGP-RFTARFFNP-----DSWADLFKAAGAKYVVLTTKHHEGYTNWPSP-VS 153
Query: 125 YSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSY------GKTLEY--NE 176
++ S + D+V EL A ++ + GLY S + P Y G +Y N
Sbjct: 154 WNWNSKD-VGPHRDLVGELGTAIRKRNIRYGLYHSLLEWFHPLYLRDKKNGFKTQYFVNA 212
Query: 177 FYMAQMAELLTRYGEIKEVWLDG 199
M ++ +L+ RY + +W DG
Sbjct: 213 KTMPELYDLVNRY-KPDLIWSDG 234
>sp|Q5RFI5|FUCO2_PONAB Plasma alpha-L-fucosidase OS=Pongo abelii GN=FUCA2 PE=2 SV=1
Length = 465
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 66/130 (50%), Gaps = 12/130 (9%)
Query: 82 VFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVA 141
+F NA+QW +++G ++LT+KHH GF LW SEY+ ++ + + + D+V
Sbjct: 104 LFTAKFFNANQWADIFQASGAKYIVLTSKHHKGFTLWGSEYS-WNWNAID-EGPKRDIVK 161
Query: 142 ELALAAK-EAGVDLGLYLSPWDRHEPSY----GKTLEYNEF----YMAQMAELLTRYGEI 192
EL +A + + GLY S ++ P + + +F + ++ EL+ Y +
Sbjct: 162 ELEVAIRNRTDLRFGLYYSLFEWFHPLFLEDESSSFHKRQFPVSKTLPELYELVNNY-QP 220
Query: 193 KEVWLDGAKG 202
+ +W DG G
Sbjct: 221 EVLWSDGDGG 230
>sp|P48300|FUCO_CANFA Tissue alpha-L-fucosidase OS=Canis familiaris GN=FUCA1 PE=2 SV=1
Length = 465
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 60/130 (46%), Gaps = 22/130 (16%)
Query: 81 RVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTG--- 137
R F+P W ++AG V+LT KHH+GF WPS SV + N G
Sbjct: 113 RFFHP-----DTWADLFQAAGARYVVLTTKHHEGFTNWPS-----SVSWNWNSNDVGPHR 162
Query: 138 DVVAELALAAKEAGVDLGLYLSPWDRHEPSY---GKTLEYNEFY-----MAQMAELLTRY 189
D+V EL A ++ + GLY S + P Y K +F+ M ++ +L+ RY
Sbjct: 163 DLVGELGRALRKRNIRYGLYHSLLEWFHPLYLLDKKNNFKTQFFVRAKTMPELYDLVNRY 222
Query: 190 GEIKEVWLDG 199
E +W DG
Sbjct: 223 -EPDLIWSDG 231
>sp|P17164|FUCO_RAT Tissue alpha-L-fucosidase OS=Rattus norvegicus GN=Fuca1 PE=1 SV=1
Length = 462
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 16/127 (12%)
Query: 81 RVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVV 140
R F+P +W ++AG V+LTAKHH+GF WPS ++ S + D+V
Sbjct: 109 RFFHP-----EEWADLFQAAGAKYVVLTAKHHEGFTNWPSA-VSWNWNSKD-VGPHRDLV 161
Query: 141 AELALAAKEAGVDLGLYLSPWDRHEPSY----GKTLEYNEFY----MAQMAELLTRYGEI 192
EL A ++ + GLY S ++ P Y L+ F M ++ +L+ RY +
Sbjct: 162 GELGAAVRKRNIRYGLYHSLFEWFHPLYLLDKKNGLKTQHFVSTKTMPELYDLVNRY-KP 220
Query: 193 KEVWLDG 199
+W DG
Sbjct: 221 DLIWSDG 227
>sp|Q99LJ1|FUCO_MOUSE Tissue alpha-L-fucosidase OS=Mus musculus GN=Fuca1 PE=2 SV=1
Length = 452
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 81 RVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYT-DYSVKSSEWKNGTGDV 139
R F+P QW ++AG V+LT KHH+GF WPS + +++ K D+
Sbjct: 99 RFFHP-----DQWAELFQAAGAKYVVLTTKHHEGFTNWPSPVSWNWNSKDV---GPHRDL 150
Query: 140 VAELALAAKEAGVDLGLYLSPWDRHEPSY 168
V EL A ++ + GLY S + P Y
Sbjct: 151 VGELGAAVRKRNIRYGLYHSLLEWFHPLY 179
>sp|Q60HF8|FUCO_MACFA Tissue alpha-L-fucosidase OS=Macaca fascicularis GN=FUCA1 PE=2 SV=1
Length = 468
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 81 RVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYT-DYSVKSSEWKNGTGDV 139
R F+P +W ++AG V+LT KHH+GF WPS + +++ K D+
Sbjct: 115 RFFHP-----EEWADLFQAAGAKYVVLTTKHHEGFTNWPSPVSWNWNSKDV---GPHRDL 166
Query: 140 VAELALAAKEAGVDLGLYLSPWDRHEPSY 168
V EL A ++ + GLY S + P Y
Sbjct: 167 VGELGTALRKRNIRYGLYHSLLEWFHPLY 195
>sp|P04066|FUCO_HUMAN Tissue alpha-L-fucosidase OS=Homo sapiens GN=FUCA1 PE=1 SV=4
Length = 466
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 81 RVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYT-DYSVKSSEWKNGTGDV 139
R F+P +W ++AG V+LT KHH+GF WPS + +++ K D+
Sbjct: 113 RFFHP-----EEWADLFQAAGAKYVVLTTKHHEGFTNWPSPVSWNWNSKDV---GPHRDL 164
Query: 140 VAELALAAKEAGVDLGLYLSPWDRHEPSY 168
V EL A ++ + GLY S + P Y
Sbjct: 165 VGELGTALRKRNIRYGLYHSLLEWFHPLY 193
>sp|B7GSF9|DNAA_BIFLS Chromosomal replication initiator protein DnaA OS=Bifidobacterium
longum subsp. infantis (strain ATCC 15697 / DSM 20088 /
JCM 1222 / NCTC 11817 / S12) GN=dnaA PE=3 SV=1
Length = 500
Score = 35.8 bits (81), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 181 QMAELLTRYGEIKEVWLDGAK--GEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGP 234
Q+AE RY ++ + +D + G E ++ FF + F+ +HQ R VI SDV P
Sbjct: 248 QIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHT-FNALHQANKRIVIASDVAP 302
>sp|Q8G6K0|DNAA_BIFLO Chromosomal replication initiator protein DnaA OS=Bifidobacterium
longum (strain NCC 2705) GN=dnaA PE=3 SV=1
Length = 500
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 181 QMAELLTRYGEIKEVWLDGAK--GEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGP 234
Q+AE RY ++ + +D + G E ++ FF + F+ +HQ R VI SDV P
Sbjct: 248 QIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHT-FNALHQANKRIVIASDVAP 302
>sp|B3DP22|DNAA_BIFLD Chromosomal replication initiator protein DnaA OS=Bifidobacterium
longum (strain DJO10A) GN=dnaA PE=3 SV=1
Length = 500
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 181 QMAELLTRYGEIKEVWLDGAK--GEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGP 234
Q+AE RY ++ + +D + G E ++ FF + F+ +HQ R VI SDV P
Sbjct: 248 QIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHT-FNALHQANKRIVIASDVAP 302
>sp|P11904|PARM_ECOLX Plasmid segregation protein ParM OS=Escherichia coli GN=parM PE=1
SV=1
Length = 320
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 46 SSPQLEWQLSSMALFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQW 93
++ +L+WQ S + H PN+F EW D +VFN T LN Q+
Sbjct: 10 TNIKLQWQESDGTIKQHISPNSFK-REWAVSFGDKKVFNYT-LNGEQY 55
>sp|Q0A8G6|KATG_ALHEH Catalase-peroxidase OS=Alkalilimnicola ehrlichei (strain MLHE-1)
GN=katG PE=3 SV=1
Length = 723
Score = 32.3 bits (72), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 13/43 (30%)
Query: 205 EKDMEYFFD----SWFSLIHQLQPRAVIFSDVGPDTRWIGDEA 243
+KD EYF + +WF LIH+ D+GP TR+IG EA
Sbjct: 395 QKDPEYFNEVFARAWFKLIHR---------DMGPKTRYIGPEA 428
>sp|A7EKL8|DUS3_SCLS1 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Sclerotinia
sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=dus3
PE=3 SV=1
Length = 750
Score = 31.6 bits (70), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 152 VDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYF 211
V G + PW E G+TL+ + Q E RYG E W G G+ F
Sbjct: 614 VARGALIKPWLFEEIEKGQTLDKSASERLQYIEKFARYG--LEAWGSDEMGVGQ--TRRF 669
Query: 212 FDSWFSLIHQLQPRAVI 228
W S H+ P ++
Sbjct: 670 LLEWLSFAHRYVPAGIL 686
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,129,982
Number of Sequences: 539616
Number of extensions: 7035544
Number of successful extensions: 17275
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 17242
Number of HSP's gapped (non-prelim): 42
length of query: 364
length of database: 191,569,459
effective HSP length: 119
effective length of query: 245
effective length of database: 127,355,155
effective search space: 31202012975
effective search space used: 31202012975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)