Query 047217
Match_columns 364
No_of_seqs 158 out of 1101
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:54:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047217.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047217hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00812 Alpha_L_fucos Alpha 100.0 4.3E-86 9.4E-91 655.5 27.1 294 30-356 5-343 (384)
2 PF01120 Alpha_L_fucos: Alpha- 100.0 3.8E-84 8.3E-89 636.2 23.5 277 46-352 31-346 (346)
3 KOG3340 Alpha-L-fucosidase [Ca 100.0 1.5E-75 3.3E-80 548.2 20.5 300 32-362 24-370 (454)
4 COG3669 Alpha-L-fucosidase [Ca 100.0 4.6E-63 9.9E-68 476.0 23.2 300 41-355 7-324 (430)
5 PF14871 GHL6: Hypothetical gl 99.7 1.8E-17 3.8E-22 141.7 9.7 104 89-199 1-132 (132)
6 PF14488 DUF4434: Domain of un 98.2 7E-05 1.5E-09 66.6 14.3 130 86-225 15-154 (166)
7 PF02638 DUF187: Glycosyl hydr 97.9 8.4E-05 1.8E-09 72.6 11.3 108 90-199 21-162 (311)
8 PF02065 Melibiase: Melibiase; 97.4 0.0044 9.5E-08 62.5 14.2 135 90-233 60-235 (394)
9 COG1649 Uncharacterized protei 96.3 0.17 3.7E-06 51.2 16.1 114 83-199 56-207 (418)
10 PF00150 Cellulase: Cellulase 95.6 0.23 4.9E-06 46.5 12.6 130 89-230 22-170 (281)
11 TIGR02402 trehalose_TreZ malto 95.1 0.34 7.4E-06 51.0 13.2 138 91-231 114-280 (542)
12 TIGR01515 branching_enzym alph 94.3 1.2 2.7E-05 47.6 15.1 138 91-231 160-348 (613)
13 KOG3111 D-ribulose-5-phosphate 94.0 0.79 1.7E-05 41.7 10.8 87 89-202 75-179 (224)
14 PRK12313 glycogen branching en 93.7 1.5 3.2E-05 47.1 14.5 139 90-231 173-361 (633)
15 cd06593 GH31_xylosidase_YicI Y 93.6 1.3 2.8E-05 42.9 12.8 132 90-233 26-208 (308)
16 PLN02447 1,4-alpha-glucan-bran 93.1 1.5 3.2E-05 48.0 13.2 138 90-230 253-444 (758)
17 PRK08005 epimerase; Validated 92.8 2.3 5.1E-05 39.3 12.4 104 89-229 69-190 (210)
18 PLN02960 alpha-amylase 92.8 2.6 5.7E-05 46.6 14.5 137 91-230 420-609 (897)
19 PRK05402 glycogen branching en 92.7 2.3 4.9E-05 46.5 14.2 138 91-231 269-457 (726)
20 cd06592 GH31_glucosidase_KIAA1 92.7 0.82 1.8E-05 44.4 9.8 99 90-201 32-165 (303)
21 PF00834 Ribul_P_3_epim: Ribul 92.7 0.68 1.5E-05 42.5 8.6 88 89-202 68-176 (201)
22 cd06589 GH31 The enzymes of gl 92.4 2.8 6E-05 39.8 12.8 92 88-202 24-117 (265)
23 TIGR02102 pullulan_Gpos pullul 92.4 2.7 5.8E-05 47.9 14.4 133 94-231 486-671 (1111)
24 PRK08745 ribulose-phosphate 3- 92.3 4.3 9.3E-05 37.9 13.5 106 89-230 73-199 (223)
25 TIGR02104 pulA_typeI pullulana 92.3 2.9 6.2E-05 44.7 14.0 135 92-231 168-348 (605)
26 COG3867 Arabinogalactan endo-1 92.0 1.8 3.9E-05 42.0 10.7 71 89-170 64-137 (403)
27 PRK09722 allulose-6-phosphate 91.7 2.2 4.7E-05 40.0 10.9 88 89-201 70-178 (229)
28 PRK08091 ribulose-phosphate 3- 90.8 7.9 0.00017 36.2 13.6 106 89-230 79-207 (228)
29 PRK14705 glycogen branching en 89.9 5.4 0.00012 46.0 13.8 139 90-231 768-957 (1224)
30 PRK12568 glycogen branching en 89.1 13 0.00027 40.8 15.4 138 90-231 272-461 (730)
31 TIGR02456 treS_nterm trehalose 88.8 8.2 0.00018 40.6 13.6 64 91-156 31-94 (539)
32 TIGR02100 glgX_debranch glycog 88.1 5.9 0.00013 43.1 12.1 138 93-231 189-377 (688)
33 COG0036 Rpe Pentose-5-phosphat 87.9 16 0.00034 34.1 13.1 106 88-230 71-197 (220)
34 PRK08883 ribulose-phosphate 3- 87.9 15 0.00033 34.1 13.2 105 89-229 69-194 (220)
35 TIGR02103 pullul_strch alpha-1 87.7 2.6 5.6E-05 47.0 9.2 88 139-231 405-525 (898)
36 smart00642 Aamy Alpha-amylase 85.9 2.2 4.8E-05 37.7 6.3 63 95-159 26-91 (166)
37 PRK10785 maltodextrin glucosid 85.6 13 0.00028 39.7 12.9 138 90-231 181-372 (598)
38 PLN02229 alpha-galactosidase 85.2 36 0.00078 34.9 15.2 116 97-229 94-213 (427)
39 PTZ00170 D-ribulose-5-phosphat 84.6 8.7 0.00019 35.7 9.9 107 88-230 75-201 (228)
40 PRK03705 glycogen debranching 84.5 16 0.00035 39.5 13.1 136 93-230 184-370 (658)
41 PLN02692 alpha-galactosidase 84.3 19 0.0004 36.8 12.6 114 98-228 88-206 (412)
42 PRK13125 trpA tryptophan synth 84.2 2.8 6.1E-05 39.3 6.5 56 83-160 83-138 (244)
43 cd06600 GH31_MGAM-like This fa 84.0 6 0.00013 38.6 8.9 100 89-201 25-160 (317)
44 cd06594 GH31_glucosidase_YihQ 83.9 6.7 0.00015 38.4 9.2 94 82-201 64-166 (317)
45 cd06602 GH31_MGAM_SI_GAA This 83.8 7.8 0.00017 38.3 9.7 102 89-201 25-165 (339)
46 PRK14706 glycogen branching en 83.4 25 0.00053 38.0 13.9 137 91-230 171-356 (639)
47 cd06599 GH31_glycosidase_Aec37 83.1 6.7 0.00015 38.3 8.8 104 89-200 30-167 (317)
48 PF01055 Glyco_hydro_31: Glyco 82.0 5.5 0.00012 40.5 8.1 103 89-202 44-181 (441)
49 PRK14057 epimerase; Provisiona 81.0 33 0.00071 32.7 12.2 106 89-230 86-221 (254)
50 PF01261 AP_endonuc_2: Xylose 80.0 3.4 7.5E-05 36.4 5.2 94 89-200 72-166 (213)
51 PLN03244 alpha-amylase; Provis 79.8 13 0.00029 40.8 10.2 93 137-230 440-584 (872)
52 PF04476 DUF556: Protein of un 79.4 3.1 6.7E-05 39.0 4.7 62 85-160 128-189 (235)
53 cd06522 GH25_AtlA-like AtlA is 78.9 6.5 0.00014 35.4 6.6 109 88-222 13-121 (192)
54 cd06591 GH31_xylosidase_XylS X 78.9 8 0.00017 37.8 7.7 102 89-201 25-159 (319)
55 PF12683 DUF3798: Protein of u 78.7 3.3 7.2E-05 39.6 4.7 89 88-198 117-206 (275)
56 smart00633 Glyco_10 Glycosyl h 78.5 9.9 0.00021 35.7 8.0 92 137-229 15-122 (254)
57 PF00128 Alpha-amylase: Alpha 78.5 2 4.3E-05 40.3 3.3 130 94-231 10-197 (316)
58 cd06595 GH31_xylosidase_XylS-l 78.2 11 0.00023 36.4 8.3 106 89-200 26-158 (292)
59 PF13200 DUF4015: Putative gly 77.8 6.4 0.00014 38.7 6.6 68 90-159 15-82 (316)
60 PLN02808 alpha-galactosidase 76.5 44 0.00096 33.8 12.3 111 97-222 63-176 (386)
61 PRK14510 putative bifunctional 74.4 32 0.00069 40.0 12.0 134 92-228 191-371 (1221)
62 cd06604 GH31_glucosidase_II_Ma 74.3 16 0.00034 36.0 8.4 99 88-200 24-158 (339)
63 TIGR03128 RuMP_HxlA 3-hexulose 73.5 6.9 0.00015 35.3 5.3 48 88-159 62-110 (206)
64 PTZ00445 p36-lilke protein; Pr 72.7 9.2 0.0002 35.5 5.8 63 90-159 31-100 (219)
65 cd06597 GH31_transferase_CtsY 71.8 56 0.0012 32.3 11.7 111 88-200 24-186 (340)
66 cd06523 GH25_PlyB-like PlyB is 71.7 9.2 0.0002 34.0 5.6 99 93-222 14-113 (177)
67 cd06415 GH25_Cpl1-like Cpl-1 l 71.5 10 0.00023 34.2 6.0 42 97-158 17-58 (196)
68 cd06416 GH25_Lys1-like Lys-1 i 70.7 9.2 0.0002 34.4 5.4 63 90-165 73-137 (196)
69 PLN03231 putative alpha-galact 70.7 38 0.00083 33.9 10.2 87 139-227 87-211 (357)
70 cd06524 GH25_YegX-like YegX is 70.4 9.7 0.00021 34.2 5.5 47 93-159 14-63 (194)
71 cd06598 GH31_transferase_CtsZ 69.9 23 0.00049 34.6 8.3 105 89-201 25-164 (317)
72 TIGR00696 wecB_tagA_cpsF bacte 68.9 27 0.00059 31.3 8.0 75 136-230 33-107 (177)
73 PRK02227 hypothetical protein; 68.7 6 0.00013 37.2 3.8 60 87-160 130-189 (238)
74 cd04724 Tryptophan_synthase_al 68.5 12 0.00025 35.2 5.8 45 91-160 94-138 (242)
75 PRK13209 L-xylulose 5-phosphat 67.1 6.3 0.00014 37.3 3.7 88 91-201 102-190 (283)
76 COG0106 HisA Phosphoribosylfor 67.1 13 0.00027 35.2 5.6 55 85-160 144-198 (241)
77 TIGR02403 trehalose_treC alpha 66.3 12 0.00027 39.3 6.0 63 92-157 31-94 (543)
78 PRK12677 xylose isomerase; Pro 65.3 88 0.0019 31.5 11.7 58 87-158 30-87 (384)
79 cd06416 GH25_Lys1-like Lys-1 i 65.2 1E+02 0.0022 27.5 11.3 48 92-160 14-61 (196)
80 cd06412 GH25_CH-type CH-type ( 64.9 16 0.00034 33.1 5.7 44 96-159 17-60 (199)
81 TIGR00262 trpA tryptophan synt 64.8 18 0.00038 34.4 6.2 48 88-160 102-149 (256)
82 cd06419 GH25_muramidase_2 Unch 63.2 20 0.00043 32.5 6.0 45 93-158 22-66 (190)
83 cd00019 AP2Ec AP endonuclease 62.8 4.4 9.5E-05 38.4 1.7 91 90-201 87-179 (279)
84 cd06525 GH25_Lyc-like Lyc mura 61.9 19 0.0004 32.1 5.6 100 93-222 14-115 (184)
85 cd06533 Glyco_transf_WecG_TagA 61.7 54 0.0012 28.9 8.5 75 136-230 31-106 (171)
86 PRK07279 dnaE DNA polymerase I 61.7 22 0.00048 40.4 7.2 62 59-156 1-62 (1034)
87 cd06413 GH25_muramidase_1 Unch 60.0 22 0.00049 31.8 5.8 45 93-158 17-61 (191)
88 cd06603 GH31_GANC_GANAB_alpha 59.9 51 0.0011 32.4 8.7 101 90-200 26-161 (339)
89 TIGR01370 cysRS possible cyste 59.7 57 0.0012 32.1 8.9 90 142-233 85-214 (315)
90 PLN02877 alpha-amylase/limit d 59.4 51 0.0011 37.3 9.4 86 140-230 468-595 (970)
91 PRK10933 trehalose-6-phosphate 59.4 23 0.0005 37.5 6.5 60 90-156 35-99 (551)
92 PRK09856 fructoselysine 3-epim 58.6 11 0.00023 35.5 3.5 57 90-157 92-148 (275)
93 cd03309 CmuC_like CmuC_like. P 58.0 1.9E+02 0.0042 28.3 13.3 63 138-200 155-222 (321)
94 PF01183 Glyco_hydro_25: Glyco 57.8 24 0.00052 31.1 5.5 101 95-221 13-117 (181)
95 PRK10658 putative alpha-glucos 57.7 49 0.0011 36.0 8.7 123 82-233 318-467 (665)
96 COG3345 GalA Alpha-galactosida 57.3 29 0.00063 36.7 6.6 136 87-231 305-483 (687)
97 PRK09441 cytoplasmic alpha-amy 56.9 22 0.00048 36.7 5.9 64 90-156 24-99 (479)
98 cd04726 KGPDC_HPS 3-Keto-L-gul 56.6 24 0.00053 31.4 5.4 45 92-160 68-113 (202)
99 PRK05898 dnaE DNA polymerase I 54.8 35 0.00076 38.6 7.2 62 59-156 1-62 (971)
100 PF13199 Glyco_hydro_66: Glyco 54.5 40 0.00086 35.8 7.3 146 82-231 110-308 (559)
101 TIGR00510 lipA lipoate synthas 54.5 37 0.00081 33.1 6.6 51 90-157 96-148 (302)
102 PRK14511 maltooligosyl trehalo 54.2 31 0.00068 38.5 6.6 75 82-158 12-89 (879)
103 cd00599 GH25_muramidase Endo-N 54.1 35 0.00076 30.1 6.0 100 93-222 14-116 (186)
104 PF10566 Glyco_hydro_97: Glyco 54.1 44 0.00095 32.2 6.9 63 89-160 33-95 (273)
105 PF13380 CoA_binding_2: CoA bi 53.5 24 0.00053 29.1 4.5 39 90-155 68-106 (116)
106 COG3669 Alpha-L-fucosidase [Ca 53.3 70 0.0015 32.5 8.3 97 90-200 103-205 (430)
107 PF07338 DUF1471: Protein of u 53.3 22 0.00048 25.6 3.7 22 91-112 22-43 (56)
108 COG1501 Alpha-glucosidases, fa 53.0 1.3E+02 0.0028 33.4 11.1 136 91-233 280-465 (772)
109 PRK10426 alpha-glucosidase; Pr 52.4 63 0.0014 34.9 8.5 138 90-233 223-412 (635)
110 cd06542 GH18_EndoS-like Endo-b 52.0 1.5E+02 0.0032 27.5 10.1 61 137-198 50-111 (255)
111 PRK14864 putative biofilm stre 52.0 71 0.0015 26.2 6.8 22 91-112 67-88 (104)
112 cd06543 GH18_PF-ChiA-like PF-C 51.9 2.3E+02 0.005 27.4 13.8 124 93-229 17-143 (294)
113 PTZ00032 60S ribosomal protein 51.3 29 0.00063 31.8 4.9 43 90-154 169-211 (211)
114 PF13460 NAD_binding_10: NADH( 51.2 22 0.00048 30.8 4.1 55 85-162 46-100 (183)
115 PF03808 Glyco_tran_WecB: Glyc 51.1 1.2E+02 0.0027 26.6 9.0 75 136-230 33-108 (172)
116 COG0320 LipA Lipoate synthase 51.1 20 0.00042 34.6 3.9 50 85-151 94-146 (306)
117 cd06414 GH25_LytC-like The Lyt 50.7 41 0.00089 30.1 5.9 49 93-159 15-63 (191)
118 PLN02801 beta-amylase 50.7 36 0.00077 35.5 6.0 53 91-155 330-382 (517)
119 PRK09997 hydroxypyruvate isome 50.5 19 0.0004 33.7 3.8 58 90-158 87-144 (258)
120 PRK13210 putative L-xylulose 5 50.5 18 0.0004 33.9 3.8 58 91-159 97-154 (284)
121 PF10673 DUF2487: Protein of u 50.5 17 0.00036 31.6 3.1 24 90-113 73-96 (142)
122 TIGR00060 L18_bact ribosomal p 49.9 29 0.00064 28.9 4.4 43 90-154 72-114 (114)
123 PRK13813 orotidine 5'-phosphat 49.7 30 0.00065 31.4 4.9 47 90-160 69-115 (215)
124 PRK14114 1-(5-phosphoribosyl)- 49.3 26 0.00057 32.9 4.6 56 84-160 140-195 (241)
125 TIGR00542 hxl6Piso_put hexulos 47.0 26 0.00056 33.1 4.2 57 91-158 97-153 (279)
126 cd03174 DRE_TIM_metallolyase D 46.7 98 0.0021 28.6 8.1 79 137-228 114-193 (265)
127 PLN02446 (5-phosphoribosyl)-5- 46.6 35 0.00077 32.6 5.0 47 85-147 160-206 (262)
128 cd02875 GH18_chitobiase Chitob 46.1 2.6E+02 0.0057 27.7 11.4 172 16-219 3-179 (358)
129 PF01229 Glyco_hydro_39: Glyco 45.6 53 0.0011 34.1 6.5 134 91-230 43-201 (486)
130 PRK13586 1-(5-phosphoribosyl)- 45.2 27 0.00059 32.6 4.0 33 82-114 140-172 (232)
131 PRK13363 protocatechuate 4,5-d 44.9 49 0.0011 32.8 5.8 68 91-159 78-177 (335)
132 COG1400 SEC65 Signal recogniti 44.3 36 0.00077 27.4 3.9 69 77-150 21-89 (93)
133 smart00633 Glyco_10 Glycosyl h 44.0 1.7E+02 0.0037 27.3 9.2 100 90-194 18-154 (254)
134 PF14468 DUF4427: Protein of u 43.9 27 0.00058 29.5 3.2 63 290-353 37-100 (132)
135 PRK13210 putative L-xylulose 5 43.7 2.5E+02 0.0053 26.2 10.4 59 85-157 13-71 (284)
136 CHL00200 trpA tryptophan synth 43.4 60 0.0013 31.0 6.0 53 83-160 100-153 (263)
137 PRK13111 trpA tryptophan synth 43.4 57 0.0012 31.0 5.8 53 83-160 98-151 (258)
138 CHL00073 chlN photochlorophyll 43.3 1.6E+02 0.0035 30.5 9.5 76 137-230 323-398 (457)
139 cd07945 DRE_TIM_CMS Leptospira 43.1 1.5E+02 0.0032 28.5 8.7 200 93-361 79-279 (280)
140 PRK13307 bifunctional formalde 42.7 50 0.0011 33.5 5.6 50 87-160 235-286 (391)
141 PF11373 DUF3175: Protein of u 42.5 65 0.0014 25.4 4.9 42 298-353 45-86 (86)
142 PRK14507 putative bifunctional 42.5 53 0.0012 39.4 6.5 67 90-158 760-827 (1693)
143 TIGR01919 hisA-trpF 1-(5-phosp 42.4 36 0.00079 32.0 4.3 59 81-160 142-200 (243)
144 TIGR01182 eda Entner-Doudoroff 42.3 43 0.00094 30.8 4.7 39 86-154 66-104 (204)
145 TIGR02401 trehalose_TreY malto 42.1 64 0.0014 35.9 6.7 66 90-157 18-84 (825)
146 PRK14024 phosphoribosyl isomer 41.8 37 0.00081 31.7 4.3 34 83-116 141-174 (241)
147 PF02836 Glyco_hydro_2_C: Glyc 41.7 1.6E+02 0.0035 28.0 8.8 113 88-231 33-157 (298)
148 TIGR03234 OH-pyruv-isom hydrox 41.7 26 0.00057 32.4 3.3 57 91-158 87-143 (254)
149 cd07367 CarBb CarBb is the B s 41.5 64 0.0014 30.7 5.9 68 91-159 32-112 (268)
150 COG0256 RplR Ribosomal protein 41.3 51 0.0011 28.0 4.6 42 91-154 84-125 (125)
151 PLN02334 ribulose-phosphate 3- 41.1 88 0.0019 28.8 6.7 49 89-160 76-124 (229)
152 COG0296 GlgB 1,4-alpha-glucan 40.6 2.4E+02 0.0053 30.5 10.5 107 90-200 167-305 (628)
153 TIGR01163 rpe ribulose-phospha 40.4 92 0.002 27.7 6.6 48 88-160 66-113 (210)
154 TIGR00640 acid_CoA_mut_C methy 40.4 52 0.0011 27.9 4.6 50 88-159 40-90 (132)
155 COG0107 HisF Imidazoleglycerol 40.4 40 0.00086 31.8 4.1 32 85-116 152-183 (256)
156 PLN02803 beta-amylase 40.0 74 0.0016 33.5 6.3 54 90-155 401-454 (548)
157 PF13069 DUF3933: Protein of u 39.8 18 0.00038 25.1 1.3 17 99-115 36-52 (53)
158 PF00977 His_biosynth: Histidi 39.7 51 0.0011 30.5 4.8 31 86-116 145-175 (229)
159 PRK09852 cryptic 6-phospho-bet 39.0 50 0.0011 34.3 5.1 96 92-197 75-176 (474)
160 PRK09505 malS alpha-amylase; R 38.4 79 0.0017 34.5 6.6 65 90-156 232-310 (683)
161 PRK03692 putative UDP-N-acetyl 38.2 1.5E+02 0.0031 28.0 7.7 73 136-230 90-164 (243)
162 PRK13397 3-deoxy-7-phosphohept 37.6 70 0.0015 30.4 5.4 56 90-158 31-86 (250)
163 PF07488 Glyco_hydro_67M: Glyc 37.6 2.3E+02 0.0049 27.9 8.9 85 90-192 59-151 (328)
164 PLN02617 imidazole glycerol ph 37.4 40 0.00086 35.7 4.1 32 85-116 435-466 (538)
165 smart00481 POLIIIAc DNA polyme 37.4 48 0.001 24.0 3.5 45 87-155 14-58 (67)
166 PLN02905 beta-amylase 36.9 82 0.0018 33.9 6.2 78 90-189 577-656 (702)
167 KOG1065 Maltase glucoamylase a 36.7 91 0.002 34.5 6.7 28 82-109 344-372 (805)
168 TIGR02631 xylA_Arthro xylose i 36.2 1.2E+02 0.0027 30.5 7.3 57 87-157 31-87 (382)
169 cd06547 GH85_ENGase Endo-beta- 36.2 55 0.0012 32.5 4.7 89 141-231 49-148 (339)
170 PLN02763 hydrolase, hydrolyzin 36.2 1.4E+02 0.0031 33.9 8.3 25 174-200 311-335 (978)
171 PLN02814 beta-glucosidase 36.0 60 0.0013 34.0 5.1 62 91-162 80-141 (504)
172 COG2185 Sbm Methylmalonyl-CoA 36.0 65 0.0014 28.0 4.5 45 90-156 52-96 (143)
173 PRK12595 bifunctional 3-deoxy- 35.9 74 0.0016 31.8 5.6 56 90-158 134-189 (360)
174 PLN02361 alpha-amylase 35.8 88 0.0019 31.8 6.2 61 91-156 32-94 (401)
175 TIGR03586 PseI pseudaminic aci 35.7 69 0.0015 31.6 5.3 66 90-156 19-95 (327)
176 PF15284 PAGK: Phage-encoded v 35.6 35 0.00075 25.2 2.3 23 10-32 5-27 (61)
177 PRK01033 imidazole glycerol ph 35.4 58 0.0013 30.7 4.6 32 85-116 149-180 (258)
178 PLN02705 beta-amylase 35.3 67 0.0015 34.4 5.2 55 90-155 559-613 (681)
179 TIGR03217 4OH_2_O_val_ald 4-hy 35.2 3.2E+02 0.007 26.9 9.9 78 137-229 113-192 (333)
180 cd02871 GH18_chitinase_D-like 35.0 2.7E+02 0.0059 26.9 9.3 58 138-198 60-117 (312)
181 PRK15014 6-phospho-beta-glucos 35.0 64 0.0014 33.5 5.1 90 91-191 72-168 (477)
182 PF00701 DHDPS: Dihydrodipicol 34.8 1.6E+02 0.0035 27.9 7.6 103 88-230 83-185 (289)
183 PF03102 NeuB: NeuB family; I 34.7 36 0.00079 32.1 3.0 61 94-157 2-75 (241)
184 PLN00197 beta-amylase; Provisi 34.7 76 0.0016 33.5 5.5 54 90-155 422-475 (573)
185 PLN02161 beta-amylase 34.7 92 0.002 32.6 6.1 53 91-155 419-471 (531)
186 PLN02591 tryptophan synthase 33.7 86 0.0019 29.7 5.4 49 87-160 92-140 (250)
187 TIGR01501 MthylAspMutase methy 33.7 85 0.0018 26.9 4.9 46 87-154 38-83 (134)
188 PLN02849 beta-glucosidase 33.7 67 0.0015 33.7 5.0 62 91-162 82-143 (503)
189 PLN00196 alpha-amylase; Provis 33.4 95 0.0021 31.8 6.0 60 91-156 47-110 (428)
190 PLN02899 alpha-galactosidase 33.2 29 0.00063 37.1 2.3 22 139-160 114-135 (633)
191 cd00615 Orn_deC_like Ornithine 32.3 1.3E+02 0.0029 28.5 6.6 49 87-156 139-188 (294)
192 PRK03745 signal recognition pa 32.0 62 0.0014 26.4 3.5 68 80-150 24-95 (100)
193 CHL00139 rpl18 ribosomal prote 31.7 1E+02 0.0022 25.4 4.8 43 90-154 67-109 (109)
194 PRK13511 6-phospho-beta-galact 31.7 99 0.0022 32.0 5.9 96 91-198 57-157 (469)
195 PLN02746 hydroxymethylglutaryl 31.6 2.7E+02 0.006 27.7 8.8 80 138-225 162-241 (347)
196 PRK02083 imidazole glycerol ph 31.4 55 0.0012 30.6 3.7 31 84-114 149-179 (253)
197 PRK06920 dnaE DNA polymerase I 31.4 69 0.0015 36.9 5.0 45 88-156 19-63 (1107)
198 PF14883 GHL13: Hypothetical g 31.1 5.1E+02 0.011 25.3 10.9 134 89-229 18-190 (294)
199 PRK11709 putative L-ascorbate 30.7 58 0.0013 32.5 3.9 30 86-117 259-288 (355)
200 KOG0496 Beta-galactosidase [Ca 30.2 7.4E+02 0.016 26.9 17.4 32 290-321 248-281 (649)
201 PRK05593 rplR 50S ribosomal pr 30.1 1.1E+02 0.0023 25.6 4.8 43 90-154 75-117 (117)
202 PRK09593 arb 6-phospho-beta-gl 30.0 1E+02 0.0022 32.0 5.7 60 91-162 76-138 (478)
203 PRK14582 pgaB outer membrane N 30.0 4.7E+02 0.01 28.6 10.7 104 91-200 337-467 (671)
204 smart00518 AP2Ec AP endonuclea 29.9 37 0.0008 31.8 2.3 17 91-107 87-103 (273)
205 PRK08195 4-hyroxy-2-oxovalerat 29.9 5.5E+02 0.012 25.3 10.7 78 137-229 114-193 (337)
206 PF15240 Pro-rich: Proline-ric 29.9 28 0.00061 31.3 1.3 15 17-31 2-16 (179)
207 KOG0020 Endoplasmic reticulum 29.1 34 0.00074 35.6 1.9 31 102-132 205-236 (785)
208 PLN02998 beta-glucosidase 28.7 83 0.0018 32.9 4.8 62 91-162 85-146 (497)
209 cd07584 nitrilase_6 Uncharacte 28.6 1.4E+02 0.0031 27.4 6.0 64 91-158 22-85 (258)
210 PRK09860 putative alcohol dehy 28.6 3.3E+02 0.0071 27.2 8.9 78 137-229 16-94 (383)
211 TIGR02638 lactal_redase lactal 28.4 3.3E+02 0.0071 27.1 8.9 78 137-229 14-92 (379)
212 PF07745 Glyco_hydro_53: Glyco 28.3 2.6E+02 0.0057 27.7 7.9 60 90-166 26-87 (332)
213 cd00429 RPE Ribulose-5-phospha 28.1 2E+02 0.0042 25.5 6.6 47 89-160 68-114 (211)
214 PLN02635 disproportionating en 27.7 1.3E+02 0.0027 32.0 5.9 60 54-126 27-90 (538)
215 PRK05718 keto-hydroxyglutarate 27.3 1.3E+02 0.0028 27.8 5.3 40 85-154 72-111 (212)
216 COG1683 Uncharacterized conser 27.2 1.5E+02 0.0032 26.2 5.3 58 90-155 88-145 (156)
217 PRK05581 ribulose-phosphate 3- 26.9 2E+02 0.0043 25.8 6.5 47 88-159 71-117 (220)
218 KOG1773 Stress responsive prot 26.7 58 0.0012 24.3 2.3 18 6-23 27-44 (63)
219 PRK09589 celA 6-phospho-beta-g 26.7 1.1E+02 0.0024 31.7 5.3 61 91-162 70-132 (476)
220 COG2730 BglC Endoglucanase [Ca 26.3 2.9E+02 0.0063 27.9 8.1 105 88-202 73-190 (407)
221 PF02037 SAP: SAP domain; Int 26.1 58 0.0013 21.0 2.0 15 140-154 6-20 (35)
222 cd08071 MPN_DUF2466 Mov34/MPN/ 25.9 1.3E+02 0.0027 24.8 4.5 58 84-155 42-99 (113)
223 cd07320 Extradiol_Dioxygenase_ 25.8 1.8E+02 0.0038 27.1 6.1 64 91-156 27-101 (260)
224 PRK06552 keto-hydroxyglutarate 25.6 87 0.0019 28.9 3.8 38 87-154 75-112 (213)
225 PRK04161 tagatose 1,6-diphosph 25.6 2.8E+02 0.0061 27.5 7.4 87 90-191 109-201 (329)
226 cd07937 DRE_TIM_PC_TC_5S Pyruv 25.5 5.8E+02 0.013 24.2 10.2 106 83-224 85-192 (275)
227 PF02449 Glyco_hydro_42: Beta- 25.5 23 0.0005 35.2 -0.0 53 298-350 307-374 (374)
228 PRK10259 hypothetical protein; 25.5 85 0.0018 24.9 3.2 21 91-111 53-73 (86)
229 cd08189 Fe-ADH5 Iron-containin 25.4 4.3E+02 0.0093 26.2 9.1 78 137-229 11-89 (374)
230 cd00952 CHBPH_aldolase Trans-o 25.4 5E+02 0.011 25.1 9.3 102 88-230 90-192 (309)
231 PF01212 Beta_elim_lyase: Beta 25.3 1.1E+02 0.0023 29.6 4.6 88 86-204 104-198 (290)
232 COG1902 NemA NADH:flavin oxido 25.3 4.3E+02 0.0094 26.5 9.0 109 83-200 134-260 (363)
233 cd06601 GH31_lyase_GLase GLase 25.2 3.9E+02 0.0084 26.3 8.5 82 105-200 43-132 (332)
234 TIGR03356 BGL beta-galactosida 24.9 1.4E+02 0.0031 30.4 5.6 90 91-191 57-151 (427)
235 PRK09929 hypothetical protein; 24.9 98 0.0021 24.8 3.4 22 90-111 55-76 (91)
236 TIGR00735 hisF imidazoleglycer 24.7 1.6E+02 0.0035 27.6 5.6 32 84-115 151-182 (254)
237 PRK13958 N-(5'-phosphoribosyl) 24.5 4.4E+02 0.0096 23.9 8.3 70 94-199 14-83 (207)
238 PF00232 Glyco_hydro_1: Glycos 24.5 1.4E+02 0.003 30.6 5.5 95 91-197 61-162 (455)
239 PRK09532 DNA polymerase III su 24.3 1.6E+02 0.0034 33.2 6.1 46 87-156 18-63 (874)
240 KOG2366 Alpha-D-galactosidase 24.1 84 0.0018 31.7 3.5 62 90-160 66-130 (414)
241 PRK01222 N-(5'-phosphoribosyl) 24.1 4.4E+02 0.0096 24.0 8.2 71 94-200 16-86 (210)
242 COG1523 PulA Type II secretory 24.0 1.5E+02 0.0032 32.5 5.7 110 94-204 206-365 (697)
243 PTZ00413 lipoate synthase; Pro 23.9 1.6E+02 0.0035 29.9 5.5 29 84-112 173-204 (398)
244 PRK07106 5-aminoimidazole-4-ca 23.9 1.5E+02 0.0032 30.1 5.2 24 130-156 359-382 (390)
245 PF01208 URO-D: Uroporphyrinog 23.8 4.1E+02 0.0088 25.7 8.4 153 92-345 186-341 (343)
246 cd06545 GH18_3CO4_chitinase Th 23.8 4.5E+02 0.0098 24.3 8.4 58 140-198 48-106 (253)
247 TIGR03862 flavo_PP4765 unchara 23.8 1.3E+02 0.0028 30.3 4.9 53 87-156 53-105 (376)
248 cd06417 GH25_LysA-like LysA is 23.8 1.1E+02 0.0024 27.4 4.1 72 140-221 38-110 (195)
249 PRK13358 protocatechuate 4,5-d 23.6 1.8E+02 0.0039 27.5 5.7 66 91-157 32-110 (269)
250 PRK06015 keto-hydroxyglutarate 23.4 1E+02 0.0023 28.2 3.8 38 87-154 63-100 (201)
251 COG2723 BglB Beta-glucosidase/ 23.3 1.9E+02 0.0042 30.0 6.1 97 91-197 62-164 (460)
252 cd08187 BDH Butanol dehydrogen 23.3 4.8E+02 0.01 25.9 9.0 79 137-230 14-93 (382)
253 PRK13306 ulaD 3-keto-L-gulonat 23.1 1.6E+02 0.0034 27.1 5.1 49 88-160 66-115 (216)
254 cd07939 DRE_TIM_NifV Streptomy 23.1 5.1E+02 0.011 24.1 8.7 111 89-224 71-182 (259)
255 PRK14508 4-alpha-glucanotransf 23.0 1.5E+02 0.0033 31.0 5.5 56 56-126 6-63 (497)
256 KOG3340 Alpha-L-fucosidase [Ca 23.0 2.4E+02 0.0053 28.1 6.4 33 210-243 197-232 (454)
257 PRK09875 putative hydrolase; P 22.9 61 0.0013 31.4 2.3 62 88-156 61-122 (292)
258 PLN02784 alpha-amylase 22.8 1.7E+02 0.0037 32.8 5.9 60 92-156 525-586 (894)
259 TIGR01233 lacG 6-phospho-beta- 22.8 1.8E+02 0.0039 30.1 5.9 96 91-198 56-156 (467)
260 cd06603 GH31_GANC_GANAB_alpha 22.7 78 0.0017 31.1 3.1 27 82-108 57-84 (339)
261 cd04722 TIM_phosphate_binding 22.6 1.6E+02 0.0035 25.0 4.9 45 94-160 77-123 (200)
262 PRK09989 hypothetical protein; 22.5 84 0.0018 29.2 3.2 59 89-158 86-144 (258)
263 smart00812 Alpha_L_fucos Alpha 22.5 3.4E+02 0.0075 27.3 7.7 23 136-159 80-102 (384)
264 PF03659 Glyco_hydro_71: Glyco 22.2 1.9E+02 0.0041 29.2 5.8 77 86-191 12-89 (386)
265 PF01081 Aldolase: KDPG and KH 21.9 1.2E+02 0.0026 27.7 3.9 39 88-156 68-106 (196)
266 PF13204 DUF4038: Protein of u 21.6 7.2E+02 0.016 23.8 10.3 137 88-231 30-185 (289)
267 PRK13398 3-deoxy-7-phosphohept 21.6 2.4E+02 0.0053 26.9 6.1 57 90-159 43-99 (266)
268 cd07366 3MGA_Dioxygenase Subun 21.5 1.9E+02 0.0042 28.5 5.5 69 90-159 75-173 (328)
269 cd00423 Pterin_binding Pterin 21.3 1.5E+02 0.0032 28.0 4.6 22 87-109 107-128 (258)
270 PF03345 DDOST_48kD: Oligosacc 21.2 91 0.002 32.0 3.3 39 302-347 66-104 (423)
271 TIGR03649 ergot_EASG ergot alk 21.2 2.1E+02 0.0045 26.6 5.6 55 86-161 47-106 (285)
272 cd08188 Fe-ADH4 Iron-containin 21.2 5.6E+02 0.012 25.4 9.0 79 137-230 13-92 (377)
273 PRK07135 dnaE DNA polymerase I 21.0 1.9E+02 0.0042 32.9 6.0 46 87-156 18-63 (973)
274 PRK05481 lipoyl synthase; Prov 21.0 2.4E+02 0.0053 27.1 6.1 58 85-159 77-139 (289)
275 COG1891 Uncharacterized protei 20.8 80 0.0017 28.6 2.4 63 84-160 127-189 (235)
276 PRK07028 bifunctional hexulose 20.7 2.1E+02 0.0046 29.0 5.9 47 90-160 70-117 (430)
277 PRK07114 keto-hydroxyglutarate 20.6 1.3E+02 0.0027 28.1 3.8 38 87-154 78-115 (222)
278 TIGR00594 polc DNA-directed DN 20.4 2E+02 0.0044 32.9 6.1 46 87-156 16-61 (1022)
279 COG1663 LpxK Tetraacyldisaccha 20.1 99 0.0021 30.7 3.1 26 133-158 59-84 (336)
No 1
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=100.00 E-value=4.3e-86 Score=655.53 Aligned_cols=294 Identities=29% Similarity=0.462 Sum_probs=251.8
Q ss_pred CCCCCCCCCCCCCCCCChhhhhcccccceEEEEeCCCcCCC--CCCCCCC--------------------CCCCCCCCCC
Q 047217 30 NSPLKKPPPLPILPLPSSPQLEWQLSSMALFLHFGPNTFTD--SEWGTGR--------------------ADPRVFNPTR 87 (364)
Q Consensus 30 ~~~~~~~~~~~~~~~P~~~q~~w~d~kfGiFiHwG~~s~~~--~eW~~~~--------------------~~~~~F~p~~ 87 (364)
...+++++++..++.|.| |+|+|||||||||+||+++ +||+.+. ..+++|||++
T Consensus 5 ~~~~~~~~sl~~~~~~~W----f~dakfGiFiHWG~ySv~~~~~eW~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~F~p~~ 80 (384)
T smart00812 5 GPYQPTWESLDKRPLPEW----FRDAKFGIFIHWGVYSVPGFGGEWYWRQPNSPEYKHHIKNYGPEFGYKDFAPQFTAEK 80 (384)
T ss_pred CCCCCChhhhhcccChhH----HhcCceEEEEEecccccccCCccccccCCCCcHHHHHHhccCCcccHHHHHhcCCchh
Confidence 346788889988888888 8999999999999999998 8998421 1257999999
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCC
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPS 167 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~ 167 (364)
|||+|||++||+|||||+|||||||||||||||++|+||++++ ++|||||+||++||||+|||||+|||++|||+|.
T Consensus 81 fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~---~pkrDiv~el~~A~rk~Glk~G~Y~S~~DW~~p~ 157 (384)
T smart00812 81 FDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDT---GPKRDLVGELADAVRKRGLKFGLYHSLFDWFNPL 157 (384)
T ss_pred CCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCC---CCCcchHHHHHHHHHHcCCeEEEEcCHHHhCCCc
Confidence 9999999999999999999999999999999999999999886 4589999999999999999999999999999999
Q ss_pred CCC----------chhhHHHH---HHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCe---EEecC
Q 047217 168 YGK----------TLEYNEFY---MAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRA---VIFSD 231 (364)
Q Consensus 168 y~~----------~~~y~~~~---~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~---vi~~~ 231 (364)
|.. ...|.+|+ ++||+||++|||| +++||||+++... ..|+.++++++++++||++ ||++|
T Consensus 158 y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygp-d~lWfD~~~~~~~--~~~~~~~l~~~~~~~qP~~~~vvvn~R 234 (384)
T smart00812 158 YAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKP-DLLWFDGGWEAPD--DYWRSKEFLAWLYNLSPVKDTVVVNDR 234 (384)
T ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHhcCCC-ceEEEeCCCCCcc--chhcHHHHHHHHHHhCCCCceEEEEcc
Confidence 863 13577777 9999999999999 9999999886542 4567899999999999998 77654
Q ss_pred CCCCcccccCCCCCCCccccccccCCCCccCCCCCCCCCCCCCCCCCCcccceeeecCCCcCCCCCC---CCCCHHHHHH
Q 047217 232 VGPDTRWIGDEAGVAGSTCWSLFNRSDAKIGGTDPRYSQGGDPHGHDWVPAECDVSIRRGWFWHASE---APKSAVELLD 308 (364)
Q Consensus 232 ~g~~~~w~g~e~g~~~~~~~~~~n~~~~~~g~~~~~~~~~g~~~~~~w~P~e~~~~i~~~W~y~~~~---~~ks~~~li~ 308 (364)
.+. .++..|.. ....+++.|.+..+.|||+|++|+.+|||++++ .+||+++||+
T Consensus 235 ~~~----~~~~~g~~-------------------~~~~e~~~p~~~~~~pwE~~~ti~~sWgy~~~~~~~~~ks~~~li~ 291 (384)
T smart00812 235 WGG----TGCKHGGF-------------------YTDEERGAPGKLLPHPWETCTTIGKSWGYRRNESDSDYKSPKELIR 291 (384)
T ss_pred ccc----cCCCCCCc-------------------ccCcccCCCCCCCCCCcccccccCCCCCcCCCCCcccCCCHHHHHH
Confidence 320 01111110 012234556667788999999999999999885 3999999999
Q ss_pred HHHhhhcCCceeEEccCCCCCCCCCHHHHHHHHHHHHHHH----HHhccccc
Q 047217 309 LYYKSVGRNCLLLLNVPPNSLGLISAEDIQVLQEFSELRK----SIFSYNLA 356 (364)
Q Consensus 309 ~l~~~Vs~nGnlLLNigP~~dG~Ip~~~~~~L~eiG~wl~----~if~~~~~ 356 (364)
+|+++|||||||||||||++||+||+.++++|++||+||+ +||+|+.-
T Consensus 292 ~l~~~Vsk~GnlLLNVgP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr~~ 343 (384)
T smart00812 292 DLVDIVSKGGNLLLNVGPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTRPW 343 (384)
T ss_pred HHhhhcCCCceEEEccCCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCCCC
Confidence 9999999999999999999999999999999999999994 99999863
No 2
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=100.00 E-value=3.8e-84 Score=636.18 Aligned_cols=277 Identities=39% Similarity=0.665 Sum_probs=210.4
Q ss_pred ChhhhhcccccceEEEEeCCCcCCCC---CCCC----------C-----CCCCCCCCCCCCCHHHHHHHHHHcCCCEEEE
Q 047217 46 SSPQLEWQLSSMALFLHFGPNTFTDS---EWGT----------G-----RADPRVFNPTRLNASQWVHAAKSAGFNRVIL 107 (364)
Q Consensus 46 ~~~q~~w~d~kfGiFiHwG~~s~~~~---eW~~----------~-----~~~~~~F~p~~fD~~~Wa~l~k~aGakYvvl 107 (364)
.+.+.||+|+|||||||||+||+++. ||+. . .+.++.|||++|||+|||++||+|||||+||
T Consensus 31 ~~~~~wf~dakfGiFiHwG~ys~~~~~~~eWy~~~~~~~~~~~~~~~~Y~~~~~~F~p~~fD~dqW~~~ak~aGakY~Vl 110 (346)
T PF01120_consen 31 HPRPQWFRDAKFGIFIHWGPYSVPGWGYAEWYGRPMYIMGSYKIPEEEYGDFAKQFNPTKFDADQWAKLAKDAGAKYVVL 110 (346)
T ss_dssp SHHHHHHHHH-EEEEE--SGGGTTTCCHGGGHHHHCCHHHHHTCCCSCGGGHGGG---TT--HHHHHHHHHHTT-SEEEE
T ss_pred chhHHHHhhCceeEEEEECcccccccccccccccccccccccccchhhHhhhhhhCCcccCCHHHHHHHHHHcCCCEEEe
Confidence 45566699999999999999999964 8921 0 1246899999999999999999999999999
Q ss_pred eeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCch---------------
Q 047217 108 TAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTL--------------- 172 (364)
Q Consensus 108 TaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~--------------- 172 (364)
|||||||||||||++|+|||+++ ++|||||+||++||||+|||||||||++|||++.|....
T Consensus 111 TakHHDGF~LW~S~~t~~~v~~~---~~krDiv~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~ 187 (346)
T PF01120_consen 111 TAKHHDGFCLWPSKYTDYNVVNS---GPKRDIVGELADACRKYGLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQ 187 (346)
T ss_dssp EEE-TT--BSS--TT-SSBGGGG---GGTS-HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHH
T ss_pred ehhhcCccccCCCCCCcccccCC---CCCCCHHHHHHHHHHHcCCeEEEEecchHhcCcccCCCccCCcccccccchhhH
Confidence 99999999999999999999885 567999999999999999999999999999999876432
Q ss_pred h-hHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeEEecCCCCCcccccCCCCCCCcccc
Q 047217 173 E-YNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTRWIGDEAGVAGSTCW 251 (364)
Q Consensus 173 ~-y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~~~g~~~~w~g~e~g~~~~~~~ 251 (364)
+ |.+++++||+||++|| +++++||||++... ...+..++++++||++||++||+++.+.. +.+.. .+
T Consensus 188 ~~~~~~~~~ql~EL~~~Y-~~d~lWfDg~~~~~--~~~~~~~~~~~~i~~~qp~~ii~~r~~~~------~~~~~---d~ 255 (346)
T PF01120_consen 188 RYYNEYWLAQLRELLTRY-KPDILWFDGGWPDP--DEDWDSAELYNWIRKLQPDVIINNRWGGN------EQGDG---DY 255 (346)
T ss_dssp HHHHHHHHHHHHHHHHCS-TESEEEEESTTSCC--CTHHHHHHHHHHHHHHSTTSEEECCCSSC------SSCCB---SC
T ss_pred hHhhhhhHHHHHHHHhCC-CcceEEecCCCCcc--ccccCHHHHHHHHHHhCCeEEEecccCCC------CCccc---cc
Confidence 2 4569999999999999 78999999987653 24567799999999999999999865422 11110 00
Q ss_pred ccccCCCCccCCCCCCCCCCCCCCCCCCcccceeeecCCCcCC-CCCCCCCCHHHHHHHHHhhhcCCceeEEccCCCCCC
Q 047217 252 SLFNRSDAKIGGTDPRYSQGGDPHGHDWVPAECDVSIRRGWFW-HASEAPKSAVELLDLYYKSVGRNCLLLLNVPPNSLG 330 (364)
Q Consensus 252 ~~~n~~~~~~g~~~~~~~~~g~~~~~~w~P~e~~~~i~~~W~y-~~~~~~ks~~~li~~l~~~Vs~nGnlLLNigP~~dG 330 (364)
...+++.+....+.|||+|++|+.+||| .+++.+||+++||++|+++|||||||||||||++||
T Consensus 256 ---------------~~~E~~~~~~~~~~pwE~~~ti~~~W~y~~~~~~~ks~~~li~~l~~~vs~ngnlLLNigP~~dG 320 (346)
T PF01120_consen 256 ---------------NTPERGIPGEIQGRPWETCTTIGPSWGYNTPDEKYKSADELIDILVDSVSRNGNLLLNIGPDPDG 320 (346)
T ss_dssp ---------------CEECTTBTTTEEESEEEEEEESSSSSS-CGGGCGS--HHHHHHHHHHHHTBTEEEEEEE---TTS
T ss_pred ---------------cchhccCCCCCCCCCccccCcCCCCCcccCCCCCcCCHHHHHHHHHHHhccCceEEEecCCCCCC
Confidence 1112334445678899999999999999 677789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH----HHhc
Q 047217 331 LISAEDIQVLQEFSELRK----SIFS 352 (364)
Q Consensus 331 ~Ip~~~~~~L~eiG~wl~----~if~ 352 (364)
+||++++++|++||+||+ +||+
T Consensus 321 ~ip~~~~~~L~e~G~Wl~~ngeaIYg 346 (346)
T PF01120_consen 321 TIPEEQVERLREIGDWLKVNGEAIYG 346 (346)
T ss_dssp S--HHHHHHHHHHHHHHHHHGGGTTT
T ss_pred CcCHHHHHHHHHHHHHHHhccccccC
Confidence 999999999999999995 7764
No 3
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-75 Score=548.16 Aligned_cols=300 Identities=28% Similarity=0.455 Sum_probs=245.7
Q ss_pred CCCCCCCCCCCCCCChhhhhcccccceEEEEeCCCcCC--CCCCCC----C--------------------CCCCCCCCC
Q 047217 32 PLKKPPPLPILPLPSSPQLEWQLSSMALFLHFGPNTFT--DSEWGT----G--------------------RADPRVFNP 85 (364)
Q Consensus 32 ~~~~~~~~~~~~~P~~~q~~w~d~kfGiFiHwG~~s~~--~~eW~~----~--------------------~~~~~~F~p 85 (364)
++.+|+|++.||+|.| +.++|||+|||||++|++ ++||.+ + .+.+++|+|
T Consensus 24 yqp~w~Sld~RPlP~w----~d~akfgiflhWgv~Svp~~gSEWfWw~Wk~~~~P~yv~Fmd~ny~P~fty~df~~~Fta 99 (454)
T KOG3340|consen 24 YQPDWESLDLRPLPAW----YDDAKFGIFLHWGVYSVPSFGSEWFWWYWKGEFGPKYVTFMDDNYKPGFTYADFASQFTA 99 (454)
T ss_pred cCCCchhhccCCCCcc----cccCcceeEEEeeeeecccccchhhhhhhhccCCCceeeeccccCCCCCchhhchhhhhh
Confidence 6999999999999999 899999999999999998 799853 1 124689999
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCC-ccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC
Q 047217 86 TRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDY-SVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRH 164 (364)
Q Consensus 86 ~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~-~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~ 164 (364)
+.|+|.|||+++|++||||||||+|||||||||||++|++ |++- .|||||||+||+.|+||+||+||||||+++|+
T Consensus 100 ~~fnA~qWa~lfq~sGaryvVLTsKHHeGFtlWPS~~SwnwNS~d---vgpkrDiV~EL~~A~rk~dirfGLY~SlfEwf 176 (454)
T KOG3340|consen 100 TLFNASQWADLFQDSGARYVVLTSKHHEGFTLWPSEYSWNWNSMD---VGPKRDIVGELASAIRKRDIRFGLYYSLFEWF 176 (454)
T ss_pred hhcCHHHHHHHHHhcCceEEEEeecccCceecCCCcCcccccccc---cCccccHHHHHHHHHHhcCcceeEeecHHHhh
Confidence 9999999999999999999999999999999999999985 5443 69999999999999999999999999999999
Q ss_pred CCCCCCchh--------hHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCC--CeEEecCCCC
Q 047217 165 EPSYGKTLE--------YNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQP--RAVIFSDVGP 234 (364)
Q Consensus 165 ~~~y~~~~~--------y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP--~~vi~~~~g~ 234 (364)
+|.|.++.. +.+++++|+.||+++|-| +.+|.||.|+.+ ++.|...+.+.-+..-.| |.||.||
T Consensus 177 hplyl~d~~~~f~~~~f~~~k~lpem~eLVtkY~P-eviWSDGew~~p--d~YW~s~~FlaWLYN~SPVkd~VV~ND--- 250 (454)
T KOG3340|consen 177 HPLYLDDKKHLFNTQHFPEEKTLPEMYELVTKYNP-EVIWSDGEWEAP--DDYWNSTEFLAWLYNDSPVKDTVVVND--- 250 (454)
T ss_pred chhhccchhhcccccccchhcchHHHHHHHHhcCC-ceEeeCCCcCCc--hhhhchhhhHHHhhcCCCccceEEecc---
Confidence 999998865 678899999999999999 899999999875 356666666665555555 5555543
Q ss_pred CcccccCCCCCCCccccccccCCCCccCCCCCCCCCCCCCCCCCCcccceeeecC-CCcCCCCCC---CCCCHHHHHHHH
Q 047217 235 DTRWIGDEAGVAGSTCWSLFNRSDAKIGGTDPRYSQGGDPHGHDWVPAECDVSIR-RGWFWHASE---APKSAVELLDLY 310 (364)
Q Consensus 235 ~~~w~g~e~g~~~~~~~~~~n~~~~~~g~~~~~~~~~g~~~~~~w~P~e~~~~i~-~~W~y~~~~---~~ks~~~li~~l 310 (364)
||.....+..+. .++ -.+..+.|....++| |.|+|+. .||||+++. ++-+..|||..|
T Consensus 251 --RWG~gt~c~HGg----fy~---------csD~~~Pg~L~~hKW---Enc~tlDk~SWG~Rrd~~~Sd~~t~~Eii~ql 312 (454)
T KOG3340|consen 251 --RWGTGTMCKHGG----FYT---------CSDRYNPGKLLEHKW---ENCMTLDKHSWGYRRDMKLSDVNTAYEIIKQL 312 (454)
T ss_pred --cccCCcccccCC----eee---------ccccCCCcccchhhh---hhceeeeccccchhcccchhhhhhHHHHHHHH
Confidence 564433322110 000 001122333334555 9999994 699999986 467999999999
Q ss_pred HhhhcCCceeEEccCCCCCCCCCHHHHHHHHHHHHHH----HHHhccc--cccccccc
Q 047217 311 YKSVGRNCLLLLNVPPNSLGLISAEDIQVLQEFSELR----KSIFSYN--LAENALVS 362 (364)
Q Consensus 311 ~~~Vs~nGnlLLNigP~~dG~Ip~~~~~~L~eiG~wl----~~if~~~--~~~~~~~~ 362 (364)
+++||+||||||||||+.||+|++...+||++||+|| ++||+|+ ..++.+++
T Consensus 313 v~Tvsc~GN~LlNvGPt~~G~I~~iFeeRL~~vGrwl~ingEaIy~t~pW~~Qndt~~ 370 (454)
T KOG3340|consen 313 VRTVSCNGNLLLNVGPTKDGTIPPIFEERLREVGRWLKINGEAIYGTRPWIHQNDTST 370 (454)
T ss_pred HHhEeeCCeEEEeecCCcCCcccHHHHHHHHHhhhhEeecceeEeeccceeeecCccc
Confidence 9999999999999999999999999999999999999 5999987 34444444
No 4
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.6e-63 Score=475.95 Aligned_cols=300 Identities=34% Similarity=0.611 Sum_probs=238.1
Q ss_pred CCCCCChhhhhcccccceEEEEeCCCcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCC
Q 047217 41 ILPLPSSPQLEWQLSSMALFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPS 120 (364)
Q Consensus 41 ~~~~P~~~q~~w~d~kfGiFiHwG~~s~~~~eW~~~~~~~~~F~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S 120 (364)
.-+.|++-|.+|+..+++.|+||+|+|+..+||..+.+.|++|||++|||.+||++||+|||||+|+|||||||||||||
T Consensus 7 vp~~~sewy~~~~~~e~~~~~~fh~nT~~dq~~f~~~~f~~~Ftae~wDP~eWar~fK~aGAKyvilvakHHDGFaLw~t 86 (430)
T COG3669 7 VPPFPSEWYLAYLYQEGSPFYHFHPNTYGDQEWFGGQEFPPRFTAENWDPREWARLFKEAGAKYVILVAKHHDGFALWPT 86 (430)
T ss_pred CCCCCchhHHHhhcccCCceEEeccccccCcccccccccccccCcccCCHHHHHHHHHHcCCcEEEEeeeecCCeeeccc
Confidence 34678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC----CCCCCCCCCCCchhhHH-HHHHHHHHHHH-----ccC
Q 047217 121 EYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLS----PWDRHEPSYGKTLEYNE-FYMAQMAELLT-----RYG 190 (364)
Q Consensus 121 ~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS----~~dw~~~~y~~~~~y~~-~~~~Ql~EL~~-----~Yg 190 (364)
++|.+|+ |++|||||||+|+++|+|++||+||+|+| .||.|.+.|.+...++. |+..|+.|+.+ ++|
T Consensus 87 ~ys~wns---vk~GpKrDlvgela~Avr~qGL~FGvy~s~a~h~W~~~~g~~~~~d~~dp~y~~~~~~~~~~~~~~~~~~ 163 (430)
T COG3669 87 DYSVWNS---VKRGPKRDLVGELAKAVREQGLRFGVYLSGAWHPWDFHSGYYADSDEKDPNYYLAQLQELLSGANYGNAG 163 (430)
T ss_pred ccccccc---cccCCcccHHHHHHHHHHHcCCeeeEeeccCcccccccCCccccccccCcccccccHHHHhcccccccCC
Confidence 8888764 45899999999999999999999999999 68888777766544433 33788888776 678
Q ss_pred ccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeEEecCCCCCcccccCCCCCCCccccccccCCCCccCCCCCCCCC
Q 047217 191 EIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTRWIGDEAGVAGSTCWSLFNRSDAKIGGTDPRYSQ 270 (364)
Q Consensus 191 ~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~~~g~~~~w~g~e~g~~~~~~~~~~n~~~~~~g~~~~~~~~ 270 (364)
+++.+|.|+.|........+++++++++|++|||++++|++.|. .+|.+.+.+... |.-.+ .|. .....
T Consensus 164 ~~d~~~~dnaw~~~~~~~~~wl~r~~e~i~~y~P~~vyFd~wg~-~~~a~a~y~~~r---~p~~~-----~g~--~~~~~ 232 (430)
T COG3669 164 PFDEVWLDNAWGNGPAKVNYWLARWFELIRRYQPDLVYFDWWGT-ILWATAEYGYNR---WPGVR-----PGK--LETEA 232 (430)
T ss_pred CCcchhhcccccCChHHHHHHHHHHHHHHHhhCCCeEEecchhh-hHHhhhhhcccc---Ccccc-----CCc--chhhh
Confidence 99999999998754333467899999999999999999988765 455555554432 11111 011 01111
Q ss_pred CCCCCC---CCCcccceeeec-CCCcCCCCCCCCCCHHHHHHHHHhhhcCCceeEEccCCCCCCCCCHHHHHHHHHHHHH
Q 047217 271 GGDPHG---HDWVPAECDVSI-RRGWFWHASEAPKSAVELLDLYYKSVGRNCLLLLNVPPNSLGLISAEDIQVLQEFSEL 346 (364)
Q Consensus 271 ~g~~~~---~~w~P~e~~~~i-~~~W~y~~~~~~ks~~~li~~l~~~Vs~nGnlLLNigP~~dG~Ip~~~~~~L~eiG~w 346 (364)
++...+ ..|.+.+|..+. .-.|+ +++..+||+++|+..|+++|||||+|||||||++||+||+.+++||.++|.|
T Consensus 233 ~~~~~~~g~n~~~~~~~~~p~h~~~~~-~~d~~~Ks~~elv~~l~dvVskgg~llLnIpp~gdG~ip~~~k~rL~d~a~w 311 (430)
T COG3669 233 RGNYLRHGDNSWTIFTCGGPDHSLRPG-HEDQDYKSVEELVSILFDVVSKGGPLLLNIPPKGDGLIPDLDKERLLDMAGW 311 (430)
T ss_pred hhhhcccccCCCcceeccCCccccccc-ccccccccHHHHhhhhhhhhccCCceEeccCCCCCCcccHHHHHHHHHHHHH
Confidence 222222 234333333322 12455 5566899999999999999999999999999999999999999999999999
Q ss_pred HH----HHhcccc
Q 047217 347 RK----SIFSYNL 355 (364)
Q Consensus 347 l~----~if~~~~ 355 (364)
|. +|+++..
T Consensus 312 l~~~~~ai~g~~p 324 (430)
T COG3669 312 LNVNYGAILGLGP 324 (430)
T ss_pred HHHhcccccCCCc
Confidence 96 5555543
No 5
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=99.72 E-value=1.8e-17 Score=141.72 Aligned_cols=104 Identities=28% Similarity=0.568 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC-CCC----
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP-WDR---- 163 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~-~dw---- 163 (364)
||++|++.+|++|+.-+++.+|.|.|+|.|||++.. ..|+ -+||++||+++||+++||++.+|+|. +|-
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~----~hp~--L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~ 74 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGP----RHPG--LKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAE 74 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCc----CCCC--CCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHH
Confidence 899999999999999999999999999999999832 2454 35999999999999999999999996 221
Q ss_pred CCCCC------CC-----------------chhhHHHHHHHHHHHHHccCccceeeecC
Q 047217 164 HEPSY------GK-----------------TLEYNEFYMAQMAELLTRYGEIKEVWLDG 199 (364)
Q Consensus 164 ~~~~y------~~-----------------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg 199 (364)
.||.| |. ...|.+++.+|++|++++|. +|++|||+
T Consensus 75 ~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~-~DGiF~D~ 132 (132)
T PF14871_consen 75 RHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYD-VDGIFFDI 132 (132)
T ss_pred hCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCC-CCEEEecC
Confidence 23322 11 12788999999999999995 59999995
No 6
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=98.15 E-value=7e-05 Score=66.63 Aligned_cols=130 Identities=23% Similarity=0.273 Sum_probs=84.4
Q ss_pred CCCCHHHHHHH---HHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee--EEEeCC
Q 047217 86 TRLNASQWVHA---AKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL--GLYLSP 160 (364)
Q Consensus 86 ~~fD~~~Wa~l---~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~--GlYyS~ 160 (364)
.++++++|-+. .|+.|++++|+.-.=..|+.-+||+..+.... .+..|+|..+.+||.+.|||| |+|++.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~~~~~~-----~~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLSPGGFY-----MPPVDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccccCcccc-----CCcccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 57899999765 57889999999999999999999998433332 245799999999999999875 778886
Q ss_pred CCCCCCCCCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCc-----chhhhHHHHHHHHHhhCCC
Q 047217 161 WDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEK-----DMEYFFDSWFSLIHQLQPR 225 (364)
Q Consensus 161 ~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~-----~~~~~~~~~~~~i~~~qP~ 225 (364)
-.|.. .+...-.+...--+.||.++||. .- =|.|+.-..+. ...-.+..+...++++.|+
T Consensus 90 ~~w~~---~~~~~~~~~~~~v~~el~~~yg~-h~-sf~GWYip~E~~~~~~~~~~~~~~l~~~lk~~s~~ 154 (166)
T PF14488_consen 90 DYWDQ---GDLDWEAERNKQVADELWQRYGH-HP-SFYGWYIPYEIDDYNWNAPERFALLGKYLKQISPG 154 (166)
T ss_pred hhhhc---cCHHHHHHHHHHHHHHHHHHHcC-CC-CCceEEEecccCCcccchHHHHHHHHHHHHHhCCC
Confidence 33432 22222222223356889999986 21 13443322111 1112345556666776664
No 7
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.93 E-value=8.4e-05 Score=72.57 Aligned_cols=108 Identities=22% Similarity=0.398 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCcc--ccCCCCCCCCChHHHHHHHHHHcCCeeEEEe--CC-----
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSV--KSSEWKNGTGDVVAELALAAKEAGVDLGLYL--SP----- 160 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v--~~~p~~g~krDlV~El~~A~rk~Glk~GlYy--S~----- 160 (364)
-++.++.++++|+.-|++-.+- .|.+||||++-+++- ...+.+.|..|+++.++++|+|+||++-..+ +.
T Consensus 21 ~~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~p~s~~~~g~~~~~pg~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~ 99 (311)
T PF02638_consen 21 IDEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIEPWSGYLTGKQGKDPGFDPLEFMIEEAHKRGLEVHAWFRVGFNAPDV 99 (311)
T ss_pred HHHHHHHHHHcCCCEEEEEEEe-CcEEEecccccccccccCCCCCCCCCccHHHHHHHHHHHcCCEEEEEEEeecCCCch
Confidence 4677788999999999999997 699999999987642 2234445679999999999999999999876 11
Q ss_pred -------CCC---CCCC----C----CC-------chhhHHHHHHHHHHHHHccCccceeeecC
Q 047217 161 -------WDR---HEPS----Y----GK-------TLEYNEFYMAQMAELLTRYGEIKEVWLDG 199 (364)
Q Consensus 161 -------~dw---~~~~----y----~~-------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg 199 (364)
.+| .++. + +. .++-.+|+..-++||++||. ||++=||.
T Consensus 100 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~Yd-vDGIhlDd 162 (311)
T PF02638_consen 100 SHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYD-VDGIHLDD 162 (311)
T ss_pred hhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCC-CCeEEecc
Confidence 011 1111 1 11 13667899999999999996 89999993
No 8
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.35 E-value=0.0044 Score=62.50 Aligned_cols=135 Identities=18% Similarity=0.269 Sum_probs=85.4
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCccc----CCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC----
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCL----WPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW---- 161 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~l----W~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~---- 161 (364)
-.+-++.++++|..|+|+= ||+.- +.+.+.+|.+...-| | +=+++|++.+++.|||||||+.+.
T Consensus 60 i~~~a~~~~~~G~e~fviD----DGW~~~r~~d~~~~GdW~~~~~kF--P--~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 60 ILELADAAAELGYEYFVID----DGWFGGRDDDNAGLGDWEPDPKKF--P--NGLKPLADYIHSLGMKFGLWFEPEMVSP 131 (394)
T ss_dssp HHHHHHHHHHHT-SEEEE-----SSSBCTESTTTSTTSBECBBTTTS--T--THHHHHHHHHHHTT-EEEEEEETTEEES
T ss_pred HHHHHHHHHHhCCEEEEEc----CccccccCCCcccCCceeEChhhh--C--CcHHHHHHHHHHCCCeEEEEeccccccc
Confidence 4567888899999999985 45432 234456776554333 2 339999999999999999999531
Q ss_pred ----CCCCCCC-----------C--------CchhhHHHHHHHHHHHHHccCccceeeecCCCCCCC---cc--h-hh--
Q 047217 162 ----DRHEPSY-----------G--------KTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGE---KD--M-EY-- 210 (364)
Q Consensus 162 ----dw~~~~y-----------~--------~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~---~~--~-~~-- 210 (364)
-..||++ + ..++..+++..++..++..|| |+.+=+|....... .. . ..
T Consensus 132 ~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~g-idYiK~D~n~~~~~~~~~~~~~~~~~~ 210 (394)
T PF02065_consen 132 DSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWG-IDYIKWDFNRDITEAGSPSLPEGYHRY 210 (394)
T ss_dssp SSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT--SEEEEE-TS-TTS-SSTTS-GHHHHH
T ss_pred hhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcC-CCEEEeccccCCCCCCCCCchHHHHHH
Confidence 1122321 1 123668899999999999998 57777786532221 10 0 11
Q ss_pred --hHHHHHHHHHhhCCCeEEecCCC
Q 047217 211 --FFDSWFSLIHQLQPRAVIFSDVG 233 (364)
Q Consensus 211 --~~~~~~~~i~~~qP~~vi~~~~g 233 (364)
-+-++++.+++-.|+++|-++.+
T Consensus 211 ~~~~y~l~~~L~~~~P~v~iE~Css 235 (394)
T PF02065_consen 211 VLGLYRLLDRLRARFPDVLIENCSS 235 (394)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEE-BT
T ss_pred HHHHHHHHHHHHHhCCCcEEEeccC
Confidence 23457889999999999877643
No 9
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.17 Score=51.24 Aligned_cols=114 Identities=18% Similarity=0.291 Sum_probs=82.6
Q ss_pred CCCCCCCHHHHH---HHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCC---CCCCCChHHHHHHHHHHcCCeeEE
Q 047217 83 FNPTRLNASQWV---HAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEW---KNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 83 F~p~~fD~~~Wa---~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~---~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
+....|++++.. +.++++|+.=+.+..+ -+|.|+|||++-+++... |+ ..++.|++++.++.+||+||++-.
T Consensus 56 ~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~-~~G~~lypS~~~p~s~~~-~~~~~~~~g~DpLa~~I~~AHkr~l~v~a 133 (418)
T COG1649 56 DSRVLFQRQELKDILDDLQKLNFNTVYPQVW-NDGDALYPSAVLPWSDGL-PGVLGVDPGYDPLAFVIAEAHKRGLEVHA 133 (418)
T ss_pred CCcccccHHHHHHHHHHHHHcCCceeEEEEe-cCccccccccccccccCc-CcccCCCCCCChHHHHHHHHHhcCCeeee
Confidence 445667776654 5578899999888887 799999999998886542 21 356799999999999999999988
Q ss_pred EeCCC--------------CCC---CCC--C--CC-----------chhhHHHHHHHHHHHHHccCccceeeecC
Q 047217 157 YLSPW--------------DRH---EPS--Y--GK-----------TLEYNEFYMAQMAELLTRYGEIKEVWLDG 199 (364)
Q Consensus 157 YyS~~--------------dw~---~~~--y--~~-----------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg 199 (364)
-+... +|. .|. | .. -++-.+|+..-+.|+++||. ||++=||-
T Consensus 134 Wf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Yd-vDGIQfDd 207 (418)
T COG1649 134 WFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYD-VDGIQFDD 207 (418)
T ss_pred chhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCC-CCceecce
Confidence 66421 110 011 0 01 12557889999999999997 57776663
No 10
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=95.59 E-value=0.23 Score=46.52 Aligned_cols=130 Identities=16% Similarity=0.204 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCC---CCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC-CCC
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEY---TDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW-DRH 164 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~---t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~-dw~ 164 (364)
..++..+.++++|++.|=+..- |+.-. .++++.. ..-+-+.+++++|+++||++.|-++.. .|.
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~-------~~~~~~~~~~~~~~~-----~~~~~ld~~v~~a~~~gi~vild~h~~~~w~ 89 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVG-------WEAYQEPNPGYNYDE-----TYLARLDRIVDAAQAYGIYVILDLHNAPGWA 89 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE-------STSTSTTSTTTSBTH-----HHHHHHHHHHHHHHHTT-EEEEEEEESTTCS
T ss_pred CHHHHHHHHHHCCCCEEEeCCC-------HHHhcCCCCCccccH-----HHHHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 8999999999999999877665 32211 1222221 124668999999999999999988863 342
Q ss_pred --CCCCCCchhhHHHHHHHHHHHHHcc-CccceeeecCCCCCCCcc----------hhh--hHHHHHHHHHhhCCCeEEe
Q 047217 165 --EPSYGKTLEYNEFYMAQMAELLTRY-GEIKEVWLDGAKGEGEKD----------MEY--FFDSWFSLIHQLQPRAVIF 229 (364)
Q Consensus 165 --~~~y~~~~~y~~~~~~Ql~EL~~~Y-g~i~~~WfDg~~~~~~~~----------~~~--~~~~~~~~i~~~qP~~vi~ 229 (364)
...+.......+.+..-++.|.++| +.-..+-||-.+++.... ..+ ...++++.||+..|+.+|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~ 169 (281)
T PF00150_consen 90 NGGDGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLII 169 (281)
T ss_dssp SSTSTTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEE
T ss_pred ccccccccchhhHHHHHhhhhhhccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceee
Confidence 2223333334455555578888888 322466778766554321 111 3567788999999998765
Q ss_pred c
Q 047217 230 S 230 (364)
Q Consensus 230 ~ 230 (364)
-
T Consensus 170 ~ 170 (281)
T PF00150_consen 170 V 170 (281)
T ss_dssp E
T ss_pred c
Confidence 4
No 11
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.10 E-value=0.34 Score=50.98 Aligned_cols=138 Identities=15% Similarity=0.207 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCCCEEEEeeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE---EeCC------
Q 047217 91 SQWVHAAKSAGFNRVILTAKHH-DGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL---YLSP------ 160 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHH-dGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl---YyS~------ 160 (364)
.+-++-+|+.|...|-|+--+. .+-..|-=..++|......| | ..|=+++|+++|+++||++.+ |-|.
T Consensus 114 ~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~-G-~~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~ 191 (542)
T TIGR02402 114 IEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAY-G-GPDDLKALVDAAHGLGLGVILDVVYNHFGPEGNY 191 (542)
T ss_pred HHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccccc-C-CHHHHHHHHHHHHHCCCEEEEEEccCCCCCcccc
Confidence 3447889999999999987753 22223333334443333344 2 357799999999999999987 2221
Q ss_pred CCCCCC--------CCCCc-----h---hhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCC
Q 047217 161 WDRHEP--------SYGKT-----L---EYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQP 224 (364)
Q Consensus 161 ~dw~~~--------~y~~~-----~---~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP 224 (364)
.+.+.| .++.+ + ...+++...++-.++.|| ||++-||...........-.+.++.+.+++.+|
T Consensus 192 ~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~-iDGfR~D~~~~~~~~~~~~~l~~~~~~~~~~~p 270 (542)
T TIGR02402 192 LPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYH-FDGLRLDAVHAIADTSAKHILEELAREVHELAA 270 (542)
T ss_pred ccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhC-CcEEEEeCHHHhccccHHHHHHHHHHHHHHHCC
Confidence 111122 12221 2 445778888888998999 699999975332211111246788899999999
Q ss_pred C---eEEecC
Q 047217 225 R---AVIFSD 231 (364)
Q Consensus 225 ~---~vi~~~ 231 (364)
+ +++...
T Consensus 271 ~~~~~~li~E 280 (542)
T TIGR02402 271 ELRPVHLIAE 280 (542)
T ss_pred CCceEEEEEe
Confidence 9 666543
No 12
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=94.31 E-value=1.2 Score=47.57 Aligned_cols=138 Identities=19% Similarity=0.206 Sum_probs=85.6
Q ss_pred HHHHHHHHHcCCCEEEEeeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---CC------
Q 047217 91 SQWVHAAKSAGFNRVILTAKHH-DGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL---SP------ 160 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHH-dGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy---S~------ 160 (364)
++.++-+|+.|...|-|+--.- .+-..|-=..++|-...+-| |. .+=+++|+++|+++||++.+=. |.
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~-Gt-~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 237 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRF-GT-PDDFMYFVDACHQAGIGVILDWVPGHFPKDDHG 237 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCccccccc-CC-HHHHHHHHHHHHHCCCEEEEEecccCcCCccch
Confidence 4556778999999999876432 11123443445553333333 32 4569999999999999998822 11
Q ss_pred ---CC----CC--------CCCCCC------chhhHHHHHHHHHHHHHccCccceeeecCCC--------------CCCC
Q 047217 161 ---WD----RH--------EPSYGK------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAK--------------GEGE 205 (364)
Q Consensus 161 ---~d----w~--------~~~y~~------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~--------------~~~~ 205 (364)
++ ++ ++.++. .+.-.+|+...++-+++.|+ ||++-||... ....
T Consensus 238 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~-iDG~R~D~v~~~~~~~~~~~~~~~~~~~ 316 (613)
T TIGR01515 238 LAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYH-IDGLRVDAVASMLYLDYSRDEGEWSPNE 316 (613)
T ss_pred hhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC-CcEEEEcCHHHhhhhccccccccccccc
Confidence 00 00 011111 13456788888999999999 6999999631 0000
Q ss_pred -----cc-hhhhHHHHHHHHHhhCCCeEEecC
Q 047217 206 -----KD-MEYFFDSWFSLIHQLQPRAVIFSD 231 (364)
Q Consensus 206 -----~~-~~~~~~~~~~~i~~~qP~~vi~~~ 231 (364)
.. ..-.+.++.+.|++..|++++...
T Consensus 317 ~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE 348 (613)
T TIGR01515 317 DGGRENLEAVDFLRKLNQTVYEAFPGVVTIAE 348 (613)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 00 112467777899999999887653
No 13
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=94.01 E-value=0.79 Score=41.69 Aligned_cols=87 Identities=30% Similarity=0.462 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC-------
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW------- 161 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~------- 161 (364)
+|+||++-+.+|||.-+.+-.. .. .+ +.++++-.|+.|||+|+-.-+-
T Consensus 75 ~Peq~V~~~a~agas~~tfH~E----------------~~--------q~-~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~ 129 (224)
T KOG3111|consen 75 NPEQWVDQMAKAGASLFTFHYE----------------AT--------QK-PAELVEKIREKGMKVGLALKPGTPVEDLE 129 (224)
T ss_pred CHHHHHHHHHhcCcceEEEEEe----------------ec--------cC-HHHHHHHHHHcCCeeeEEeCCCCcHHHHH
Confidence 4999999999999987665322 11 12 7899999999999999987541
Q ss_pred ------CC-----CCCCCCCchhhHHHHHHHHHHHHHccCccceeeecCCCC
Q 047217 162 ------DR-----HEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKG 202 (364)
Q Consensus 162 ------dw-----~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~ 202 (364)
|. =+|.||. ..|.+-+++.+++|.++|+.+++ =.||+-+
T Consensus 130 ~~~~~~D~vLvMtVePGFGG-QkFme~mm~KV~~lR~kyp~l~i-evDGGv~ 179 (224)
T KOG3111|consen 130 PLAEHVDMVLVMTVEPGFGG-QKFMEDMMPKVEWLREKYPNLDI-EVDGGVG 179 (224)
T ss_pred HhhccccEEEEEEecCCCch-hhhHHHHHHHHHHHHHhCCCceE-EecCCcC
Confidence 11 1355553 36777788999999999998432 2577643
No 14
>PRK12313 glycogen branching enzyme; Provisional
Probab=93.74 E-value=1.5 Score=47.06 Aligned_cols=139 Identities=19% Similarity=0.273 Sum_probs=85.7
Q ss_pred HHHHHHHHHHcCCCEEEEeeee-cCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---CC-CC--
Q 047217 90 ASQWVHAAKSAGFNRVILTAKH-HDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL---SP-WD-- 162 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKH-HdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy---S~-~d-- 162 (364)
+++.++-+|+.|...|-|+--. |.+-..|.=.+++|-...+-| | ..|=+++|+++|+++||++.+=+ |. .+
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~-G-t~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~ 250 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRY-G-TPEDFMYLVDALHQNGIGVILDWVPGHFPKDDD 250 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCC-C-CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCcc
Confidence 4455688999999999877653 111123444445553333333 3 35779999999999999998832 11 01
Q ss_pred ---CCC---------C------CCCC------chhhHHHHHHHHHHHHHccCccceeeecCCC-------------CCC-
Q 047217 163 ---RHE---------P------SYGK------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAK-------------GEG- 204 (364)
Q Consensus 163 ---w~~---------~------~y~~------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~-------------~~~- 204 (364)
+.+ + .++. .++..+|+..-++-.++.|| ||++-||... ...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~-iDG~R~D~~~~~~~~d~~~~~~~~~~~ 329 (633)
T PRK12313 251 GLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYH-LDGLRVDAVSNMLYLDYDEEGEWTPNK 329 (633)
T ss_pred cccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC-CcEEEEcChhhhhhcccccccCcCCcc
Confidence 110 0 1110 12446778888888898999 6999999531 000
Q ss_pred ----Ccch-hhhHHHHHHHHHhhCCCeEEecC
Q 047217 205 ----EKDM-EYFFDSWFSLIHQLQPRAVIFSD 231 (364)
Q Consensus 205 ----~~~~-~~~~~~~~~~i~~~qP~~vi~~~ 231 (364)
.... .-.+.++.+.|++..|++++...
T Consensus 330 ~~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE 361 (633)
T PRK12313 330 YGGRENLEAIYFLQKLNEVVYLEHPDVLMIAE 361 (633)
T ss_pred cCCCCCcHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 0001 12456777889999999887654
No 15
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=93.62 E-value=1.3 Score=42.91 Aligned_cols=132 Identities=14% Similarity=0.272 Sum_probs=80.6
Q ss_pred HHHHHHHHHHcCCCEE--EEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCC-CCC
Q 047217 90 ASQWVHAAKSAGFNRV--ILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDR-HEP 166 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYv--vlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw-~~~ 166 (364)
..+.|+.+++.|.-.- ++=..+++++- ..+|+....-|. | .++|++.+++.|+|+++...+.-- ..+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~-----~~~f~~d~~~FP----d-~~~~i~~l~~~G~~~~~~~~P~i~~~~~ 95 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQ-----WCDFEFDPDRFP----D-PEGMLSRLKEKGFKVCLWINPYIAQKSP 95 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCc-----ceeeEECcccCC----C-HHHHHHHHHHCCCeEEEEecCCCCCCch
Confidence 5678888999996654 44445665532 135655433232 5 479999999999999998865210 000
Q ss_pred CC--------------C-----------------CchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcc--------
Q 047217 167 SY--------------G-----------------KTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKD-------- 207 (364)
Q Consensus 167 ~y--------------~-----------------~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~-------- 207 (364)
.| + ..++-.+++..+++++.+ +| |+.+|+|.+...+...
T Consensus 96 ~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~-~G-id~~~~D~~e~~p~~~~~~~g~~~ 173 (308)
T cd06593 96 LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD-MG-VDCFKTDFGERIPTDVVYYDGSDG 173 (308)
T ss_pred hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH-hC-CcEEecCCCCCCCccccccCCCCc
Confidence 00 0 012446788899998876 67 6999999764321110
Q ss_pred ----h---hhhHHHHHHHHHhhCCC--eEEecCCC
Q 047217 208 ----M---EYFFDSWFSLIHQLQPR--AVIFSDVG 233 (364)
Q Consensus 208 ----~---~~~~~~~~~~i~~~qP~--~vi~~~~g 233 (364)
. .......++.+++..|+ .+|..|.|
T Consensus 174 ~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~ 208 (308)
T cd06593 174 EKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSA 208 (308)
T ss_pred ceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCC
Confidence 0 01234456777777776 56666654
No 16
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=93.14 E-value=1.5 Score=47.96 Aligned_cols=138 Identities=20% Similarity=0.245 Sum_probs=86.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---CC-----
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHH-DGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL---SP----- 160 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHH-dGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy---S~----- 160 (364)
+++-++-+|+.|...|-|+.-+- .....|-=..++|-...+-+ | ..|=+++|+++|+++||++.+=. |.
T Consensus 253 ~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~-G-tp~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~ 330 (758)
T PLN02447 253 ADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRS-G-TPEDLKYLIDKAHSLGLRVLMDVVHSHASKNTL 330 (758)
T ss_pred HHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccccccc-C-CHHHHHHHHHHHHHCCCEEEEEecccccccccc
Confidence 36678889999999999998663 22334544455654333333 2 24669999999999999998722 10
Q ss_pred -----CCCCCCC------------CCC------chhhHHHHHHHHHHHHHccCccceeeecCCCCC---------C----
Q 047217 161 -----WDRHEPS------------YGK------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGE---------G---- 204 (364)
Q Consensus 161 -----~dw~~~~------------y~~------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~---------~---- 204 (364)
+|-..+. ++. ..+..+|+...++-.++.|+ ||++-||+...- +
T Consensus 331 ~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl~ey~-IDGfRfDaV~smlY~~hg~~~~f~~~ 409 (758)
T PLN02447 331 DGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWLEEYK-FDGFRFDGVTSMLYHHHGLQMAFTGN 409 (758)
T ss_pred ccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHHHHhC-cccccccchhhhhccccCcccccccC
Confidence 1100011 111 12456788889999999999 699999964210 0
Q ss_pred --------Ccchhh-hHHHHHHHHHhhCCCeEEec
Q 047217 205 --------EKDMEY-FFDSWFSLIHQLQPRAVIFS 230 (364)
Q Consensus 205 --------~~~~~~-~~~~~~~~i~~~qP~~vi~~ 230 (364)
...... .+..+.++|++..|+++...
T Consensus 410 ~~~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IA 444 (758)
T PLN02447 410 YNEYFGMATDVDAVVYLMLANDLLHGLYPEAVTIA 444 (758)
T ss_pred cccccCCccChHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 000111 24556678999999998664
No 17
>PRK08005 epimerase; Validated
Probab=92.84 E-value=2.3 Score=39.26 Aligned_cols=104 Identities=14% Similarity=0.256 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC------
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD------ 162 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d------ 162 (364)
||+.|++.+.++||.++.+=... + .+ +.++.+.+|+.|+|.|+-..+-.
T Consensus 69 ~P~~~i~~~~~~gad~It~H~Ea-----------~-------------~~-~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~ 123 (210)
T PRK08005 69 SPQRWLPWLAAIRPGWIFIHAES-----------V-------------QN-PSEILADIRAIGAKAGLALNPATPLLPYR 123 (210)
T ss_pred CHHHHHHHHHHhCCCEEEEcccC-----------c-------------cC-HHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 59999999999999998775441 0 12 45788999999999999998621
Q ss_pred -------C-----CCCCCCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeEEe
Q 047217 163 -------R-----HEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIF 229 (364)
Q Consensus 163 -------w-----~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~ 229 (364)
. -+|.++. ..|.....+.++||.+..... .++.||+-. .+-...+.+-..|.+|.
T Consensus 124 ~~l~~vD~VlvMsV~PGf~G-Q~f~~~~~~KI~~l~~~~~~~-~I~VDGGI~----------~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 124 YLALQLDALMIMTSEPDGRG-QQFIAAMCEKVSQSREHFPAA-ECWADGGIT----------LRAARLLAAAGAQHLVI 190 (210)
T ss_pred HHHHhcCEEEEEEecCCCcc-ceecHHHHHHHHHHHHhcccC-CEEEECCCC----------HHHHHHHHHCCCCEEEE
Confidence 0 1344442 357777777777777655442 599999743 12233444445676664
No 18
>PLN02960 alpha-amylase
Probab=92.76 E-value=2.6 Score=46.62 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCCEEEEeeee-cCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---CC------
Q 047217 91 SQWVHAAKSAGFNRVILTAKH-HDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL---SP------ 160 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKH-HdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy---S~------ 160 (364)
++.++-+|+.|...|-|+.-+ |.++..|-=..++|-...+-|. ..|=+++|+++|+++||++.+=. |.
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yG--tp~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~ 497 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFG--TPDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMV 497 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccC--CHHHHHHHHHHHHHCCCEEEEEecccccCCcccc
Confidence 457888999999999999876 4556666655666644444442 24679999999999999998732 10
Q ss_pred ----CCCC------------CCCCCC------chhhHHHHHHHHHHHHHccCccceeeecCCCC----------------
Q 047217 161 ----WDRH------------EPSYGK------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAKG---------------- 202 (364)
Q Consensus 161 ----~dw~------------~~~y~~------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~---------------- 202 (364)
+|.. ++.++. ..+-.+|+...++-.++.|+ ||++-||....
T Consensus 498 ~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl~Eyh-IDGfR~DAV~sMlY~d~g~~~~~G~~~ 576 (897)
T PLN02960 498 GLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWVTEYR-VDGFQFHSLGSMLYTHNGFASFTGDLD 576 (897)
T ss_pred chhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHHHHHC-CCceeecccceeeeeccCccccCCccc
Confidence 1110 111221 12446788888999999999 68888885411
Q ss_pred --C--CCcchhh-hHHHHHHHHHhhCCCeEEec
Q 047217 203 --E--GEKDMEY-FFDSWFSLIHQLQPRAVIFS 230 (364)
Q Consensus 203 --~--~~~~~~~-~~~~~~~~i~~~qP~~vi~~ 230 (364)
. ....... .+..+.+.|++..|++++..
T Consensus 577 ~~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIA 609 (897)
T PLN02960 577 EYCNQYVDRDALIYLILANEMLHQLHPNIITIA 609 (897)
T ss_pred ccCCccCCchHHHHHHHHHHHHHhhCCCeEEEE
Confidence 0 0001112 24455678899999988664
No 19
>PRK05402 glycogen branching enzyme; Provisional
Probab=92.74 E-value=2.3 Score=46.50 Aligned_cols=138 Identities=22% Similarity=0.277 Sum_probs=85.8
Q ss_pred HHHHHHHHHcCCCEEEEeeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---CC-CCCC-
Q 047217 91 SQWVHAAKSAGFNRVILTAKHH-DGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL---SP-WDRH- 164 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHH-dGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy---S~-~dw~- 164 (364)
+++++-+|+.|...|-|+--.- ..-..|--.+++|-...+-| |. .+=+++|+++|+++||++.|=. |. .+.+
T Consensus 269 ~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~-Gt-~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~ 346 (726)
T PRK05402 269 DQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRF-GT-PDDFRYFVDACHQAGIGVILDWVPAHFPKDAHG 346 (726)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCccc-CC-HHHHHHHHHHHHHCCCEEEEEECCCCCCCCccc
Confidence 4556778999999998887642 11123444445654333333 33 4669999999999999998832 11 1100
Q ss_pred -------------------CCCCCC------chhhHHHHHHHHHHHHHccCccceeeecCCC-C-------------CC-
Q 047217 165 -------------------EPSYGK------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAK-G-------------EG- 204 (364)
Q Consensus 165 -------------------~~~y~~------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~-~-------------~~- 204 (364)
++.++. .++..+|+..-++-.++.|| ||++-||... - ..
T Consensus 347 ~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~e~~-iDG~R~D~v~~~~~~~~~~~~g~~~~~~ 425 (726)
T PRK05402 347 LARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLEEFH-IDGLRVDAVASMLYLDYSRKEGEWIPNI 425 (726)
T ss_pred hhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHHHhC-CcEEEECCHHHhhhcccccccccccccc
Confidence 011111 13556788888888999999 6999999531 0 00
Q ss_pred ----Cc-chhhhHHHHHHHHHhhCCCeEEecC
Q 047217 205 ----EK-DMEYFFDSWFSLIHQLQPRAVIFSD 231 (364)
Q Consensus 205 ----~~-~~~~~~~~~~~~i~~~qP~~vi~~~ 231 (364)
.. ...-.+.++.+.|++..|++++...
T Consensus 426 ~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE 457 (726)
T PRK05402 426 YGGRENLEAIDFLRELNAVVHEEFPGALTIAE 457 (726)
T ss_pred ccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 00 0112456777889999999987754
No 20
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=92.72 E-value=0.82 Score=44.39 Aligned_cols=99 Identities=16% Similarity=0.400 Sum_probs=64.9
Q ss_pred HHHHHHHHHHcCCCEEEEee--eecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCC-C--
Q 047217 90 ASQWVHAAKSAGFNRVILTA--KHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDR-H-- 164 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTa--KHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw-~-- 164 (364)
..+.|+.+++.|...=++.. .+.+++ .+|..+..-|. | .+++++..++.|+|++++..+.-- .
T Consensus 32 v~~~~~~~~~~~iP~d~i~iD~~w~~~~-------g~f~~d~~~FP----d-p~~mi~~l~~~G~k~~l~i~P~i~~~s~ 99 (303)
T cd06592 32 VLNYAQEIIDNGFPNGQIEIDDNWETCY-------GDFDFDPTKFP----D-PKGMIDQLHDLGFRVTLWVHPFINTDSE 99 (303)
T ss_pred HHHHHHHHHHcCCCCCeEEeCCCccccC-------CccccChhhCC----C-HHHHHHHHHHCCCeEEEEECCeeCCCCH
Confidence 46677888888865444433 444444 44544332232 5 689999999999999998875210 0
Q ss_pred -------------CC----CC------CC-------chhhHHHHHHHHHHHHHccCccceeeecCCC
Q 047217 165 -------------EP----SY------GK-------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAK 201 (364)
Q Consensus 165 -------------~~----~y------~~-------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~ 201 (364)
++ .+ +. .++-.+++..++++++..+| ++.+|+|++-
T Consensus 100 ~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E 165 (303)
T cd06592 100 NFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYG-IDSFKFDAGE 165 (303)
T ss_pred HHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhC-CcEEEeCCCC
Confidence 00 00 00 13456888999999998898 5999999864
No 21
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=92.68 E-value=0.68 Score=42.46 Aligned_cols=88 Identities=23% Similarity=0.387 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC---CC--
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW---DR-- 163 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~---dw-- 163 (364)
||+.|++.++++|+.++.+ |.+ + .+-+.++.+.+|++|+++|+-..+- +.
T Consensus 68 ~P~~~i~~~~~~g~~~i~~---H~E--~--------------------~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~ 122 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITF---HAE--A--------------------TEDPKETIKYIKEAGIKAGIALNPETPVEELE 122 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEE---EGG--G--------------------TTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGT
T ss_pred cHHHHHHHHHhcCCCEEEE---ccc--c--------------------hhCHHHHHHHHHHhCCCEEEEEECCCCchHHH
Confidence 6999999999999998865 433 0 0125588999999999999998752 11
Q ss_pred -------------CCCCCCCchhhHHHHHH---HHHHHHHccCccceeeecCCCC
Q 047217 164 -------------HEPSYGKTLEYNEFYMA---QMAELLTRYGEIKEVWLDGAKG 202 (364)
Q Consensus 164 -------------~~~~y~~~~~y~~~~~~---Ql~EL~~~Yg~i~~~WfDg~~~ 202 (364)
-+|.++. ..|.+.... +++++..++|.-..++.||+-.
T Consensus 123 ~~l~~vD~VlvMsV~PG~~G-q~f~~~~~~KI~~l~~~~~~~~~~~~I~vDGGI~ 176 (201)
T PF00834_consen 123 PYLDQVDMVLVMSVEPGFGG-QKFIPEVLEKIRELRKLIPENGLDFEIEVDGGIN 176 (201)
T ss_dssp TTGCCSSEEEEESS-TTTSS-B--HGGHHHHHHHHHHHHHHHTCGSEEEEESSES
T ss_pred HHhhhcCEEEEEEecCCCCc-ccccHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 1233332 245544444 4566666666546899999743
No 22
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=92.37 E-value=2.8 Score=39.82 Aligned_cols=92 Identities=15% Similarity=0.326 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCC--ccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDY--SVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHE 165 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~--~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~ 165 (364)
-+..+.++.+++.|.-.-++... + -|-..+.++ +.+..-| -| .+++++.++++|+|+.++..+.-
T Consensus 24 ~~v~~~~~~~~~~~iP~d~~~lD--~---~~~~~~~~f~~~~d~~~F----pd-p~~~i~~l~~~g~~~~~~~~P~v--- 90 (265)
T cd06589 24 DKVLEVIDGMRENDIPLDGFVLD--D---DYTDGYGDFTFDWDAGKF----PN-PKSMIDELHDNGVKLVLWIDPYI--- 90 (265)
T ss_pred HHHHHHHHHHHHcCCCccEEEEC--c---ccccCCceeeeecChhhC----CC-HHHHHHHHHHCCCEEEEEeChhH---
Confidence 34677888888888775444432 1 122334444 3332222 25 57999999999999999988632
Q ss_pred CCCCCchhhHHHHHHHHHHHHHccCccceeeecCCCC
Q 047217 166 PSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKG 202 (364)
Q Consensus 166 ~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~ 202 (364)
.+.+..++++++..+| |+.+|+|.+..
T Consensus 91 ---------~~w~~~~~~~~~~~~G-vdg~w~D~~E~ 117 (265)
T cd06589 91 ---------REWWAEVVKKLLVSLG-VDGFWTDMGEP 117 (265)
T ss_pred ---------HHHHHHHHHHhhccCC-CCEEeccCCCC
Confidence 5678888998877788 59999998754
No 23
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=92.35 E-value=2.7 Score=47.93 Aligned_cols=133 Identities=12% Similarity=0.241 Sum_probs=82.0
Q ss_pred HHHHHHcCCCEEEEeeeec----C---------Ccc------cCCCCCCCCccccCCCCC-CC-----CChHHHHHHHHH
Q 047217 94 VHAAKSAGFNRVILTAKHH----D---------GFC------LWPSEYTDYSVKSSEWKN-GT-----GDVVAELALAAK 148 (364)
Q Consensus 94 a~l~k~aGakYvvlTaKHH----d---------GF~------lW~S~~t~~~v~~~p~~g-~k-----rDlV~El~~A~r 148 (364)
++-+|++|...|-|+--+. + .++ .|-=...+|.+....|.. |. ..=+++|++||+
T Consensus 486 LdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH 565 (1111)
T TIGR02102 486 LDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIH 565 (1111)
T ss_pred HHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHH
Confidence 5788999999998877652 1 111 132222333332222211 11 134899999999
Q ss_pred HcCCeeEE---EeCC-----CCCCCCCC---------------CC-----chhhHHHHHHHHHHHHHccCccceeeecCC
Q 047217 149 EAGVDLGL---YLSP-----WDRHEPSY---------------GK-----TLEYNEFYMAQMAELLTRYGEIKEVWLDGA 200 (364)
Q Consensus 149 k~Glk~Gl---YyS~-----~dw~~~~y---------------~~-----~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~ 200 (364)
++||++.+ |-|. ++-..|.| +. .+...+++...++-+++.|+ ||++-||-.
T Consensus 566 ~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~-VDGFRfDl~ 644 (1111)
T TIGR02102 566 KRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFK-VDGFRFDMM 644 (1111)
T ss_pred HCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcC-CcEEEEecc
Confidence 99999987 3221 11111111 11 12445788888999999999 699999965
Q ss_pred CCCCCcchhhhHHHHHHHHHhhCCCeEEecC
Q 047217 201 KGEGEKDMEYFFDSWFSLIHQLQPRAVIFSD 231 (364)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~~ 231 (364)
...+ ...+.+++..++++.|++++...
T Consensus 645 g~~d----~~~~~~~~~~l~~~dP~~~liGE 671 (1111)
T TIGR02102 645 GDHD----AASIEIAYKEAKAINPNIIMIGE 671 (1111)
T ss_pred ccCC----HHHHHHHHHHHHHhCcCEEEEEe
Confidence 4332 12356777888899999988764
No 24
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=92.27 E-value=4.3 Score=37.85 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC------
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD------ 162 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d------ 162 (364)
||+.|++.+.++||.++.+=+.. + .+ +.+..+.+|+.|+|.|+-..+-.
T Consensus 73 ~P~~~i~~~~~~gad~I~~H~Ea-----------~-------------~~-~~~~l~~Ir~~g~k~GlalnP~T~~~~i~ 127 (223)
T PRK08745 73 PVDRIVPDFADAGATTISFHPEA-----------S-------------RH-VHRTIQLIKSHGCQAGLVLNPATPVDILD 127 (223)
T ss_pred CHHHHHHHHHHhCCCEEEEcccC-----------c-------------cc-HHHHHHHHHHCCCceeEEeCCCCCHHHHH
Confidence 69999999999999999875551 0 12 45788999999999999987521
Q ss_pred -------C-----CCCCCCCchhhHHHHHH---HHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeE
Q 047217 163 -------R-----HEPSYGKTLEYNEFYMA---QMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAV 227 (364)
Q Consensus 163 -------w-----~~~~y~~~~~y~~~~~~---Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 227 (364)
. -+|.++. ..|.+.... +++++..+.+.-..++.||+-. .+-...+.+..+|.+
T Consensus 128 ~~l~~vD~VlvMtV~PGf~G-Q~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~----------~eti~~l~~aGaDi~ 196 (223)
T PRK08745 128 WVLPELDLVLVMSVNPGFGG-QAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVK----------ADNIGAIAAAGADTF 196 (223)
T ss_pred HHHhhcCEEEEEEECCCCCC-ccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCC----------HHHHHHHHHcCCCEE
Confidence 0 1344443 245555544 4455555555324689999743 223445566677888
Q ss_pred Eec
Q 047217 228 IFS 230 (364)
Q Consensus 228 i~~ 230 (364)
|.+
T Consensus 197 V~G 199 (223)
T PRK08745 197 VAG 199 (223)
T ss_pred EEC
Confidence 764
No 25
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=92.27 E-value=2.9 Score=44.67 Aligned_cols=135 Identities=14% Similarity=0.246 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCCEEEEeeeecCCc---------ccCCCCCCCCccccCCCC----CC--CCChHHHHHHHHHHcCCeeEE
Q 047217 92 QWVHAAKSAGFNRVILTAKHHDGF---------CLWPSEYTDYSVKSSEWK----NG--TGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 92 ~Wa~l~k~aGakYvvlTaKHHdGF---------~lW~S~~t~~~v~~~p~~----g~--krDlV~El~~A~rk~Glk~Gl 156 (364)
+-++-+|++|...|-|+--+--.- ..|-=..++|.....-|. .| ..+-+++|++||+++||++.+
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vil 247 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIM 247 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEE
Confidence 347888999999998877653110 013222334422111111 11 126699999999999999987
Q ss_pred ---EeCC-------CCCCCCCC----------------CC-----chhhHHHHHHHHHHHHHccCccceeeecCCCCCCC
Q 047217 157 ---YLSP-------WDRHEPSY----------------GK-----TLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGE 205 (364)
Q Consensus 157 ---YyS~-------~dw~~~~y----------------~~-----~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~ 205 (364)
|-|. ++-..|.| ++ .+...+|+...++-.++.|| ||++-||-....+
T Consensus 248 DvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~-iDGfR~D~~~~~~- 325 (605)
T TIGR02104 248 DVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYN-IDGFRFDLMGIHD- 325 (605)
T ss_pred EEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcC-CCEEEEechhcCC-
Confidence 2221 11001111 11 12456788888888999998 6999999653322
Q ss_pred cchhhhHHHHHHHHHhhCCCeEEecC
Q 047217 206 KDMEYFFDSWFSLIHQLQPRAVIFSD 231 (364)
Q Consensus 206 ~~~~~~~~~~~~~i~~~qP~~vi~~~ 231 (364)
.-.+.++.+.+++..|++++...
T Consensus 326 ---~~~~~~~~~~~~~~~p~~~ligE 348 (605)
T TIGR02104 326 ---IETMNEIRKALNKIDPNILLYGE 348 (605)
T ss_pred ---HHHHHHHHHHHHhhCCCeEEEEc
Confidence 12456788889999999988764
No 26
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.96 E-value=1.8 Score=42.02 Aligned_cols=71 Identities=24% Similarity=0.293 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHH--HHHHHHHHcCCeeEEEeCCCC-CCC
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVA--ELALAAKEAGVDLGLYLSPWD-RHE 165 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~--El~~A~rk~Glk~GlYyS~~d-w~~ 165 (364)
.-+.-.+.+|++|..||=|-.--| + +...-.++.|+..|+-+ |+++-+++.|||+-+=||--| |-+
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwnd--------P---~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaD 132 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWND--------P---YDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWAD 132 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecC--------C---ccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccC
Confidence 345678899999999998865432 2 33334566788889976 677788889999999887655 446
Q ss_pred CCCCC
Q 047217 166 PSYGK 170 (364)
Q Consensus 166 ~~y~~ 170 (364)
|.+.+
T Consensus 133 PakQ~ 137 (403)
T COG3867 133 PAKQK 137 (403)
T ss_pred hhhcC
Confidence 65543
No 27
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=91.68 E-value=2.2 Score=40.00 Aligned_cols=88 Identities=20% Similarity=0.341 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC---C--
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD---R-- 163 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d---w-- 163 (364)
||++|++.+.++||.++.+=+.-.+ .+ +..+.+.+|+.|+|.|+-.++-. .
T Consensus 70 ~P~~~i~~~~~aGad~it~H~Ea~~-----------------------~~-~~~~i~~Ik~~G~kaGlalnP~T~~~~l~ 125 (229)
T PRK09722 70 DPQDYIDQLADAGADFITLHPETIN-----------------------GQ-AFRLIDEIRRAGMKVGLVLNPETPVESIK 125 (229)
T ss_pred CHHHHHHHHHHcCCCEEEECccCCc-----------------------ch-HHHHHHHHHHcCCCEEEEeCCCCCHHHHH
Confidence 6999999999999999887554110 12 34677999999999999998621 1
Q ss_pred -------------CCCCCCCchhhHHHHHHHHH---HHHHccCccceeeecCCC
Q 047217 164 -------------HEPSYGKTLEYNEFYMAQMA---ELLTRYGEIKEVWLDGAK 201 (364)
Q Consensus 164 -------------~~~~y~~~~~y~~~~~~Ql~---EL~~~Yg~i~~~WfDg~~ 201 (364)
-+|.++. ..|.......++ +++...+.-..++.||+-
T Consensus 126 ~~l~~vD~VLvMsV~PGf~G-Q~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI 178 (229)
T PRK09722 126 YYIHLLDKITVMTVDPGFAG-QPFIPEMLDKIAELKALRERNGLEYLIEVDGSC 178 (229)
T ss_pred HHHHhcCEEEEEEEcCCCcc-hhccHHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 1344442 346655555444 444444432468999973
No 28
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=90.75 E-value=7.9 Score=36.24 Aligned_cols=106 Identities=23% Similarity=0.190 Sum_probs=69.4
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCC--eeEEEeCCC-----
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGV--DLGLYLSPW----- 161 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Gl--k~GlYyS~~----- 161 (364)
||++|++.+.++||.++.+=..= + .+ +.+..+.+|+.|+ |.|+-..+-
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea-----------~-------------~~-~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~ 133 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQ-----------T-------------HD-LALTIEWLAKQKTTVLIGLCLCPETPISL 133 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccC-----------c-------------cc-HHHHHHHHHHCCCCceEEEEECCCCCHHH
Confidence 69999999999999998875440 0 12 4578899999999 999998762
Q ss_pred --------CC-----CCCCCCCchhhHHHHHH---HHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCC
Q 047217 162 --------DR-----HEPSYGKTLEYNEFYMA---QMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPR 225 (364)
Q Consensus 162 --------dw-----~~~~y~~~~~y~~~~~~---Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~ 225 (364)
|. -+|.|+. ..|.+.... +++++..+.+.-..++.||+-. .+-...+.+-..|
T Consensus 134 i~~~l~~vD~VLiMtV~PGfgG-Q~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~----------~~ti~~l~~aGaD 202 (228)
T PRK08091 134 LEPYLDQIDLIQILTLDPRTGT-KAPSDLILDRVIQVENRLGNRRVEKLISIDGSMT----------LELASYLKQHQID 202 (228)
T ss_pred HHHHHhhcCEEEEEEECCCCCC-ccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC----------HHHHHHHHHCCCC
Confidence 11 2355543 245554444 5556666555324689999743 1233445556678
Q ss_pred eEEec
Q 047217 226 AVIFS 230 (364)
Q Consensus 226 ~vi~~ 230 (364)
++|.+
T Consensus 203 ~~V~G 207 (228)
T PRK08091 203 WVVSG 207 (228)
T ss_pred EEEEC
Confidence 77753
No 29
>PRK14705 glycogen branching enzyme; Provisional
Probab=89.93 E-value=5.4 Score=45.97 Aligned_cols=139 Identities=22% Similarity=0.267 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCCEEEEeeee-cCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---CC-CC-C
Q 047217 90 ASQWVHAAKSAGFNRVILTAKH-HDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL---SP-WD-R 163 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKH-HdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy---S~-~d-w 163 (364)
+++-++-+|+.|...|-|+--. |.+-..|-=..++|...++-| |. -|=+++|+++|+++||++.+=. |. .| |
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ry-Gt-~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~ 845 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRF-GH-PDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSW 845 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCccc-CC-HHHHHHHHHHHHHCCCEEEEEeccccCCcchh
Confidence 4566788999999998776553 222123443445554434444 23 3558999999999999998721 11 01 1
Q ss_pred -------------------CCCCCCC------chhhHHHHHHHHHHHHHccCccceeeecCCCC--------------CC
Q 047217 164 -------------------HEPSYGK------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAKG--------------EG 204 (364)
Q Consensus 164 -------------------~~~~y~~------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~--------------~~ 204 (364)
+++.|+. ..+-.+|+..-+.-.++.|+ ||++-||.... ..
T Consensus 846 ~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyh-iDGfR~Dav~~mly~Dysr~~g~w~pn 924 (1224)
T PRK14705 846 ALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFH-IDGLRVDAVASMLYLDYSREEGQWRPN 924 (1224)
T ss_pred hhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhC-CCcEEEeehhhhhhccccccccccccc
Confidence 0112221 12446788888899999999 69999986311 00
Q ss_pred -----Ccchhh-hHHHHHHHHHhhCCCeEEecC
Q 047217 205 -----EKDMEY-FFDSWFSLIHQLQPRAVIFSD 231 (364)
Q Consensus 205 -----~~~~~~-~~~~~~~~i~~~qP~~vi~~~ 231 (364)
+..... .+.++.+.|++..|++++...
T Consensus 925 ~~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAE 957 (1224)
T PRK14705 925 RFGGRENLEAISFLQEVNATVYKTHPGAVMIAE 957 (1224)
T ss_pred ccCCccChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 000112 456777889999999887643
No 30
>PRK12568 glycogen branching enzyme; Provisional
Probab=89.14 E-value=13 Score=40.75 Aligned_cols=138 Identities=16% Similarity=0.194 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeee--cCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---CC-CCC
Q 047217 90 ASQWVHAAKSAGFNRVILTAKH--HDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL---SP-WDR 163 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKH--HdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy---S~-~dw 163 (364)
+++.++-+|+.|...|-|+--. ..+ .-|-=..+.|-...+.| +..+=+++|+++|+++||++.+=. |. .|.
T Consensus 272 a~~ll~ylk~LGvt~I~LmPi~e~~~~-~~wGY~~~~~~a~~~~~--G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~ 348 (730)
T PRK12568 272 AEQLIPYVQQLGFTHIELLPITEHPFG-GSWGYQPLGLYAPTARH--GSPDGFAQFVDACHRAGIGVILDWVSAHFPDDA 348 (730)
T ss_pred HHHHHHHHHHcCCCEEEECccccCCCC-CCCCCCCCcCCccCccc--CCHHHHHHHHHHHHHCCCEEEEEeccccCCccc
Confidence 4566778899999999887653 221 12322223332222223 334669999999999999998832 10 110
Q ss_pred -----C-------C--------CCCCC------chhhHHHHHHHHHHHHHccCccceeeecCC--------------CCC
Q 047217 164 -----H-------E--------PSYGK------TLEYNEFYMAQMAELLTRYGEIKEVWLDGA--------------KGE 203 (364)
Q Consensus 164 -----~-------~--------~~y~~------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~--------------~~~ 203 (364)
+ + +.|+. .++-.+|+...++-.++.|+ ||++-+|.. |.+
T Consensus 349 ~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyh-IDG~R~DAva~mly~d~~r~~g~w~p 427 (730)
T PRK12568 349 HGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYH-LDGLRVDAVASMLYRDYGRAEGEWVP 427 (730)
T ss_pred cccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhC-ceEEEEcCHhHhhhhccccccccccc
Confidence 0 0 11111 12446788888899999999 699999953 111
Q ss_pred CC-----cchhh-hHHHHHHHHHhhCCCeEEecC
Q 047217 204 GE-----KDMEY-FFDSWFSLIHQLQPRAVIFSD 231 (364)
Q Consensus 204 ~~-----~~~~~-~~~~~~~~i~~~qP~~vi~~~ 231 (364)
.. ..... .+.++.+.|++..|++++...
T Consensus 428 n~~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAE 461 (730)
T PRK12568 428 NAHGGRENLEAVAFLRQLNREIASQFPGVLTIAE 461 (730)
T ss_pred cccCCccChHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 00 00112 467778899999999987654
No 31
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=88.84 E-value=8.2 Score=40.57 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
.+-++-+++.|+..|-|+--+-.+-.-+.=.+++|.... |. -|..+=+++|+++|+++||++.+
T Consensus 31 ~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd-~~-~Gt~~df~~Lv~~ah~~Gi~vil 94 (539)
T TIGR02456 31 TSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAIL-PE-FGTIDDFKDFVDEAHARGMRVII 94 (539)
T ss_pred HHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccC-hh-hCCHHHHHHHHHHHHHCCCEEEE
Confidence 345778899999999999876432111111124442222 21 23357799999999999999998
No 32
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=88.08 E-value=5.9 Score=43.05 Aligned_cols=138 Identities=17% Similarity=0.286 Sum_probs=80.9
Q ss_pred HHHHHHHcCCCEEEEeeeecC---------Cc-ccCCCCCCCCccccCCCCC-CCCChHHHHHHHHHHcCCeeEE---Ee
Q 047217 93 WVHAAKSAGFNRVILTAKHHD---------GF-CLWPSEYTDYSVKSSEWKN-GTGDVVAELALAAKEAGVDLGL---YL 158 (364)
Q Consensus 93 Wa~l~k~aGakYvvlTaKHHd---------GF-~lW~S~~t~~~v~~~p~~g-~krDlV~El~~A~rk~Glk~Gl---Yy 158 (364)
.++-+|++|...|-|+--+.- |. ..|-=...+|......|.. +..+=+++|+++|+++||++.+ |=
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~N 268 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYN 268 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 577889999999988876631 10 0132223344322222211 2346699999999999999987 21
Q ss_pred CCCC-----------------CC--CC----CC------CC-----chhhHHHHHHHHHHHHHccCccceeeecCCCCCC
Q 047217 159 SPWD-----------------RH--EP----SY------GK-----TLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEG 204 (364)
Q Consensus 159 S~~d-----------------w~--~~----~y------~~-----~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~ 204 (364)
|.-+ |+ ++ .| ++ .+...+++...++-+++.|| ||++-||-....+
T Consensus 269 Ht~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~g-IDGfR~D~a~~l~ 347 (688)
T TIGR02100 269 HTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMH-VDGFRFDLATTLG 347 (688)
T ss_pred CccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcC-CcEEEEechhhhc
Confidence 1100 00 00 01 11 12456788888999999999 6999999754332
Q ss_pred Ccchhh-hHHHHHHHHHh--hCCCeEEecC
Q 047217 205 EKDMEY-FFDSWFSLIHQ--LQPRAVIFSD 231 (364)
Q Consensus 205 ~~~~~~-~~~~~~~~i~~--~qP~~vi~~~ 231 (364)
.....+ ....+++.|++ ..|++++...
T Consensus 348 ~~~~~~~~~~~~~~~i~~d~~~~~~~ligE 377 (688)
T TIGR02100 348 RELYGFDMLSGFFTAIRQDPVLAQVKLIAE 377 (688)
T ss_pred cccCCCcccHHHHHHHHhCcccCCeEEEEe
Confidence 111111 12456676766 5677877653
No 33
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=87.94 E-value=16 Score=34.07 Aligned_cols=106 Identities=18% Similarity=0.276 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC---CC-
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW---DR- 163 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~---dw- 163 (364)
-+|+.|++.+.+|||.++.+-++ .+ .=+.++.+..|++|+|.|+-+.+- +-
T Consensus 71 ~~p~~~i~~fa~agad~It~H~E------------------~~-------~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i 125 (220)
T COG0036 71 ENPDRYIEAFAKAGADIITFHAE------------------AT-------EHIHRTIQLIKELGVKAGLVLNPATPLEAL 125 (220)
T ss_pred CCHHHHHHHHHHhCCCEEEEEec------------------cC-------cCHHHHHHHHHHcCCeEEEEECCCCCHHHH
Confidence 36999999999999999987544 01 114578899999999999999752 10
Q ss_pred --------------CCCCCCCchhhHHHHHHHHHHHHHccC---ccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCe
Q 047217 164 --------------HEPSYGKTLEYNEFYMAQMAELLTRYG---EIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRA 226 (364)
Q Consensus 164 --------------~~~~y~~~~~y~~~~~~Ql~EL~~~Yg---~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~ 226 (364)
=+|.++- ..|.+-..+.+++|....+ + -.++.||+-.. +....+.+--.|+
T Consensus 126 ~~~l~~vD~VllMsVnPGfgG-Q~Fi~~~l~Ki~~lr~~~~~~~~-~~IeVDGGI~~----------~t~~~~~~AGad~ 193 (220)
T COG0036 126 EPVLDDVDLVLLMSVNPGFGG-QKFIPEVLEKIRELRAMIDERLD-ILIEVDGGINL----------ETIKQLAAAGADV 193 (220)
T ss_pred HHHHhhCCEEEEEeECCCCcc-cccCHHHHHHHHHHHHHhcccCC-eEEEEeCCcCH----------HHHHHHHHcCCCE
Confidence 1355553 2465556665655554333 4 47999997432 2334455555677
Q ss_pred EEec
Q 047217 227 VIFS 230 (364)
Q Consensus 227 vi~~ 230 (364)
+|.+
T Consensus 194 ~VaG 197 (220)
T COG0036 194 FVAG 197 (220)
T ss_pred EEEE
Confidence 6653
No 34
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=87.92 E-value=15 Score=34.06 Aligned_cols=105 Identities=14% Similarity=0.209 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC------
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD------ 162 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d------ 162 (364)
||+.|++.+.++||.++.+=+.. + .+ +.++.+.+|+.|+|.|+-+.+-.
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea-----------~-------------~~-~~~~l~~ik~~g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEA-----------S-------------EH-VDRTLQLIKEHGCQAGVVLNPATPLHHLE 123 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccC-----------c-------------cc-HHHHHHHHHHcCCcEEEEeCCCCCHHHHH
Confidence 69999999999999999875551 0 12 56788999999999999998621
Q ss_pred -------C-----CCCCCCCchhhHHHHH---HHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeE
Q 047217 163 -------R-----HEPSYGKTLEYNEFYM---AQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAV 227 (364)
Q Consensus 163 -------w-----~~~~y~~~~~y~~~~~---~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 227 (364)
. -+|.++.. .|..... .+++++..+.|.--.++.||+-. .+-...+.+...|.+
T Consensus 124 ~~l~~~D~vlvMtV~PGfgGq-~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~----------~eni~~l~~aGAd~v 192 (220)
T PRK08883 124 YIMDKVDLILLMSVNPGFGGQ-SFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVK----------VDNIREIAEAGADMF 192 (220)
T ss_pred HHHHhCCeEEEEEecCCCCCc-eecHhHHHHHHHHHHHHHhcCCCeeEEEECCCC----------HHHHHHHHHcCCCEE
Confidence 0 12444322 3444433 45556665444323578898732 112334445566776
Q ss_pred Ee
Q 047217 228 IF 229 (364)
Q Consensus 228 i~ 229 (364)
+.
T Consensus 193 Vv 194 (220)
T PRK08883 193 VA 194 (220)
T ss_pred EE
Confidence 64
No 35
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=87.69 E-value=2.6 Score=47.02 Aligned_cols=88 Identities=15% Similarity=0.242 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHcCCeeEE---EeCC----------CCCCCCCC-------C---C----------chhhHHHHHHHHHHH
Q 047217 139 VVAELALAAKEAGVDLGL---YLSP----------WDRHEPSY-------G---K----------TLEYNEFYMAQMAEL 185 (364)
Q Consensus 139 lV~El~~A~rk~Glk~Gl---YyS~----------~dw~~~~y-------~---~----------~~~y~~~~~~Ql~EL 185 (364)
=+++|+++|+++||++.+ |-|. ++-..|.| + + .+...+++...++-.
T Consensus 405 Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~W 484 (898)
T TIGR02103 405 EFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVVW 484 (898)
T ss_pred HHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 478889999999999987 3332 11111111 0 0 123457788888888
Q ss_pred HHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeEEecC
Q 047217 186 LTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSD 231 (364)
Q Consensus 186 ~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~~ 231 (364)
++.|| ||++-||-....+ .-.+.++.+.++++.|+.++++.
T Consensus 485 ~~ey~-VDGFRfDlm~~~~----~~f~~~~~~~l~~i~pdi~l~GE 525 (898)
T TIGR02103 485 AKDYK-VDGFRFDLMGHHP----KAQMLAAREAIKALTPEIYFYGE 525 (898)
T ss_pred HHHcC-CCEEEEechhhCC----HHHHHHHHHHHHHhCCCEEEEec
Confidence 99999 6999999654432 12467888899999999988864
No 36
>smart00642 Aamy Alpha-amylase domain.
Probab=85.94 E-value=2.2 Score=37.74 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=41.7
Q ss_pred HHHHHcCCCEEEEeeeecCCc---ccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 047217 95 HAAKSAGFNRVILTAKHHDGF---CLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 95 ~l~k~aGakYvvlTaKHHdGF---~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS 159 (364)
+-+++.|.+.|-|+.-+..+. .-|.=..++|....+.+ | ..+=+++|+++|+++||++.+=.-
T Consensus 26 ~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~-G-t~~d~~~lv~~~h~~Gi~vilD~V 91 (166)
T smart00642 26 DYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRF-G-TMEDFKELVDAAHARGIKVILDVV 91 (166)
T ss_pred HHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCccc-C-CHHHHHHHHHHHHHCCCEEEEEEC
Confidence 458999999999988765443 22222223442222222 3 357799999999999999987554
No 37
>PRK10785 maltodextrin glucosidase; Provisional
Probab=85.59 E-value=13 Score=39.74 Aligned_cols=138 Identities=17% Similarity=0.135 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe---C-------
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL---S------- 159 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy---S------- 159 (364)
..+-.+-+|+.|+..|-|+--+... ..+.=.+++|.... |.-|. .+-+++|+++|+++|||+.+=. |
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~-s~hgYd~~Dy~~iD-p~~Gt-~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~ 257 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAP-SVHKYDTEDYRHVD-PQLGG-DAALLRLRHATQQRGMRLVLDGVFNHTGDSHPW 257 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCC-CCCCcCcccccccC-cccCC-HHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHH
Confidence 4556788999999999999765321 11111124442222 32233 5679999999999999998722 1
Q ss_pred -----------------C-CCCCC----CC---CCC----------chhhHHHHHH----HHHHHHHc-cCccceeeecC
Q 047217 160 -----------------P-WDRHE----PS---YGK----------TLEYNEFYMA----QMAELLTR-YGEIKEVWLDG 199 (364)
Q Consensus 160 -----------------~-~dw~~----~~---y~~----------~~~y~~~~~~----Ql~EL~~~-Yg~i~~~WfDg 199 (364)
+ .||+. .. +.. .++..+++.. .++-.++. || ||++=+|.
T Consensus 258 f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~g-iDG~RlDv 336 (598)
T PRK10785 258 FDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYN-IDGWRLDV 336 (598)
T ss_pred HHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCC-CcEEEEec
Confidence 1 12210 00 100 1244455543 45566665 88 69999997
Q ss_pred CCCCCCc----chhhhHHHHHHHHHhhCCCeEEecC
Q 047217 200 AKGEGEK----DMEYFFDSWFSLIHQLQPRAVIFSD 231 (364)
Q Consensus 200 ~~~~~~~----~~~~~~~~~~~~i~~~qP~~vi~~~ 231 (364)
....... ...-.+.++.+.+++..|++++.+.
T Consensus 337 a~~v~~~~~~~~~~~f~~~~~~~vk~~~pd~~ligE 372 (598)
T PRK10785 337 VHMLGEGGGARNNLQHVAGITQAAKEENPEAYVLGE 372 (598)
T ss_pred HhHhccccCccccHHHHHHHHHHHHhhCCCeEEEEe
Confidence 6432210 0112467788899999999987754
No 38
>PLN02229 alpha-galactosidase
Probab=85.15 E-value=36 Score=34.88 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=65.1
Q ss_pred HHHcCCCEEEEeeeecCCcccCCCC----CCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCch
Q 047217 97 AKSAGFNRVILTAKHHDGFCLWPSE----YTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTL 172 (364)
Q Consensus 97 ~k~aGakYvvlTaKHHdGF~lW~S~----~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~ 172 (364)
++++|-+||++= || |-.. ..++-.+ |-+-|.+ ++.|++.+++.|||||||-+...-.-..|....
T Consensus 94 l~~~Gy~yv~iD----Dg---W~~~~rd~~G~l~~d--~~rFP~G--~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~ 162 (427)
T PLN02229 94 LADLGYIHVNID----DC---WSNLKRDSKGQLVPD--PKTFPSG--IKLLADYVHSKGLKLGIYSDAGVFTCQVRPGSL 162 (427)
T ss_pred HHhCCCEEEEEc----CC---cCCCCcCCCCCEEEC--hhhcCCc--HHHHHHHHHHCCCceEEeccCCCcccCCCCCCc
Confidence 478899999874 33 3222 1222111 1122322 899999999999999999986321111121111
Q ss_pred hhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeEEe
Q 047217 173 EYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIF 229 (364)
Q Consensus 173 ~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~ 229 (364)
. +..|-.++...+| +|.+=.|+...... ...-.+.++.+.+++-.-.+++.
T Consensus 163 g----~e~~DA~~fA~WG-VDylK~D~C~~~~~-~~~~~y~~m~~AL~~tGRpI~~S 213 (427)
T PLN02229 163 F----HEVDDADIFASWG-VDYLKYDNCYNLGI-KPIERYPPMRDALNATGRSIFYS 213 (427)
T ss_pred c----HHHHHHHHHHHcC-CCEEEecCCCCCCc-chhHHHHHHHHHHHhhCCCcEEE
Confidence 1 2344566677777 58887887654321 12224566777776654344443
No 39
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=84.57 E-value=8.7 Score=35.74 Aligned_cols=107 Identities=21% Similarity=0.366 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC-CCC--
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW-DRH-- 164 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~-dw~-- 164 (364)
-+|+.+++.+.++||.++.+-+. + ..+-+.+..+++|+.|+++|+-..+- +..
T Consensus 75 ~~p~~~i~~~~~~Gad~itvH~e---a---------------------~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l 130 (228)
T PTZ00170 75 SNPEKWVDDFAKAGASQFTFHIE---A---------------------TEDDPKAVARKIREAGMKVGVAIKPKTPVEVL 130 (228)
T ss_pred CCHHHHHHHHHHcCCCEEEEecc---C---------------------CchHHHHHHHHHHHCCCeEEEEECCCCCHHHH
Confidence 46999999999999999977222 1 12337789999999999999988751 110
Q ss_pred -----------------CCCCCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeE
Q 047217 165 -----------------EPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAV 227 (364)
Q Consensus 165 -----------------~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 227 (364)
+|.+. ...+.......++++.+.++. ..++.||+-.. +-...+.+...|.+
T Consensus 131 ~~~l~~~~vD~Vl~m~v~pG~~-gq~~~~~~~~ki~~~~~~~~~-~~I~VdGGI~~----------~ti~~~~~aGad~i 198 (228)
T PTZ00170 131 FPLIDTDLVDMVLVMTVEPGFG-GQSFMHDMMPKVRELRKRYPH-LNIQVDGGINL----------ETIDIAADAGANVI 198 (228)
T ss_pred HHHHccchhhhHHhhhcccCCC-CcEecHHHHHHHHHHHHhccc-CeEEECCCCCH----------HHHHHHHHcCCCEE
Confidence 11111 113334445566666666665 56888886431 12334455567777
Q ss_pred Eec
Q 047217 228 IFS 230 (364)
Q Consensus 228 i~~ 230 (364)
|.+
T Consensus 199 VvG 201 (228)
T PTZ00170 199 VAG 201 (228)
T ss_pred EEc
Confidence 764
No 40
>PRK03705 glycogen debranching enzyme; Provisional
Probab=84.52 E-value=16 Score=39.50 Aligned_cols=136 Identities=13% Similarity=0.146 Sum_probs=76.6
Q ss_pred HHHHHHHcCCCEEEEeeeecC---------Cc-ccCCCCCCCCccccCCCCCCCC----ChHHHHHHHHHHcCCeeEE--
Q 047217 93 WVHAAKSAGFNRVILTAKHHD---------GF-CLWPSEYTDYSVKSSEWKNGTG----DVVAELALAAKEAGVDLGL-- 156 (364)
Q Consensus 93 Wa~l~k~aGakYvvlTaKHHd---------GF-~lW~S~~t~~~v~~~p~~g~kr----DlV~El~~A~rk~Glk~Gl-- 156 (364)
-++-+|+.|...|-|+--+.- |. ..|-=...+|......| +... +=+++|+++|+++||++.+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~y-gt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAY-ASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCccccccccccccc-CCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 467889999999988766531 11 11332234443322223 2211 3588999999999999987
Q ss_pred -EeCCCC--C----------CCCC---------C------CC-----chhhHHHHHHHHHHHHHccCccceeeecCCCCC
Q 047217 157 -YLSPWD--R----------HEPS---------Y------GK-----TLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGE 203 (364)
Q Consensus 157 -YyS~~d--w----------~~~~---------y------~~-----~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~ 203 (364)
|-|..+ . ..+. | ++ .+...+++...++-.++.|| ||++-||-....
T Consensus 263 V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~g-VDGFRfD~a~~l 341 (658)
T PRK03705 263 VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCH-VDGFRFDLATVL 341 (658)
T ss_pred cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhC-CCEEEEEcHhhh
Confidence 222111 0 0011 1 11 12445788888888999999 699999965433
Q ss_pred CCcchhhhHHHHHHHHHh--hCCCeEEec
Q 047217 204 GEKDMEYFFDSWFSLIHQ--LQPRAVIFS 230 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~--~qP~~vi~~ 230 (364)
+..........+++.|++ +-|++.+..
T Consensus 342 ~~~~~~~~~~~~~~ai~~d~vl~~~~lig 370 (658)
T PRK03705 342 GRTPEFRQDAPLFTAIQNDPVLSQVKLIA 370 (658)
T ss_pred CcCcccchhhHHHHHHhhCccccceEEEE
Confidence 211111111335566654 445776654
No 41
>PLN02692 alpha-galactosidase
Probab=84.31 E-value=19 Score=36.76 Aligned_cols=114 Identities=18% Similarity=0.224 Sum_probs=63.9
Q ss_pred HHcCCCEEEEeeeecCCcccCCCCC----CCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC-CCCCCch
Q 047217 98 KSAGFNRVILTAKHHDGFCLWPSEY----TDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHE-PSYGKTL 172 (364)
Q Consensus 98 k~aGakYvvlTaKHHdGF~lW~S~~----t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~-~~y~~~~ 172 (364)
+++|-+||++= || |-.+. ..+-.+.. +-|.+ ++.|++.++++|||||+|-..-...- ..|.-..
T Consensus 88 ~~~Gy~yv~iD----Dg---W~~~~rd~~G~~~~d~~--kFP~G--~k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~ 156 (412)
T PLN02692 88 SKLGYTYVNID----DC---WAEIARDEKGNLVPKKS--TFPSG--IKALADYVHSKGLKLGIYSDAGYFTCSKTMPGSL 156 (412)
T ss_pred hhcCcEEEEEc----CC---cCCCCCCCCCCeeeChh--hcCCc--HHHHHHHHHHCCCceEEEecCCccccCCCCCCch
Confidence 56799998874 23 43322 22212222 23333 99999999999999999997532110 0111111
Q ss_pred hhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeEE
Q 047217 173 EYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVI 228 (364)
Q Consensus 173 ~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi 228 (364)
. +.+|..++...+| +|.+=.|+....... ..-.+.++.+.+++-.-.+++
T Consensus 157 g----~e~~DA~~fA~WG-vDylK~D~C~~~~~~-~~~~y~~m~~AL~~tGRpI~~ 206 (412)
T PLN02692 157 G----HEEQDAKTFASWG-IDYLKYDNCNNDGSK-PTVRYPVMTRALMKAGRPIFF 206 (412)
T ss_pred H----HHHHHHHHHHhcC-CCEEeccccCCCCcc-hhHHHHHHHHHHHHhCCCeEE
Confidence 2 3355666667777 477777876433211 123456677777665444544
No 42
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=84.23 E-value=2.8 Score=39.34 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=43.4
Q ss_pred CCCCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 83 FNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 83 F~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
+||-..||++|++.++++|+..+++-.-| +.. -+=..++.++||++||+.++..++
T Consensus 83 ~n~~~~~~~~~i~~~~~~Gadgvii~dlp-------------~e~---------~~~~~~~~~~~~~~Gl~~~~~v~p 138 (244)
T PRK13125 83 LEDYVDSLDNFLNMARDVGADGVLFPDLL-------------IDY---------PDDLEKYVEIIKNKGLKPVFFTSP 138 (244)
T ss_pred cchhhhCHHHHHHHHHHcCCCEEEECCCC-------------CCc---------HHHHHHHHHHHHHcCCCEEEEECC
Confidence 36656799999999999999999992110 100 123678999999999999999996
No 43
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=84.01 E-value=6 Score=38.64 Aligned_cols=100 Identities=17% Similarity=0.330 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHcCCCEEEEeee--ecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC---CC
Q 047217 89 NASQWVHAAKSAGFNRVILTAK--HHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW---DR 163 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaK--HHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~---dw 163 (364)
+..+.++.+++.+.-.-++... +-+++ .+|+.+..-|. | .++|++.++++|+|+.++..+. +-
T Consensus 25 ~v~~~~~~~~~~~iP~d~i~lD~~~~~~~-------~~f~~d~~~FP----d-p~~~i~~l~~~g~k~~~~~~P~i~~~~ 92 (317)
T cd06600 25 KVVEVVDIMQKEGFPYDVVFLDIHYMDSY-------RLFTWDPYRFP----E-PKKLIDELHKRNVKLVTIVDPGIRVDQ 92 (317)
T ss_pred HHHHHHHHHHHcCCCcceEEEChhhhCCC-------CceeechhcCC----C-HHHHHHHHHHCCCEEEEEeeccccCCC
Confidence 3567788888888766555543 22333 33333322232 4 3699999999999999987652 11
Q ss_pred CCCCC------------------------CC-------chhhHHHHHHHHHHHHHccCccceeeecCCC
Q 047217 164 HEPSY------------------------GK-------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAK 201 (364)
Q Consensus 164 ~~~~y------------------------~~-------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~ 201 (364)
..+.| +. .++-.+.+..++++++..+| |+.+|+|.+-
T Consensus 93 ~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~g-vdg~w~D~~E 160 (317)
T cd06600 93 NYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQG-VDGIWLDMNE 160 (317)
T ss_pred CChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCC-CceEEeeCCC
Confidence 01100 00 12456788899999998888 5999999863
No 44
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=83.85 E-value=6.7 Score=38.38 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=55.2
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE-----
Q 047217 82 VFNPTRL-NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLG----- 155 (364)
Q Consensus 82 ~F~p~~f-D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G----- 155 (364)
.|++++| ||.+.++.+++.|.|.++.+-=| ++ . .+ . ..-+.+.++|.-+-
T Consensus 64 ~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~---v~----------~-~~------~----~~y~~~~~~g~~vk~~~g~ 119 (317)
T cd06594 64 EWDPERYPGLDELIEELKARGIRVLTYINPY---LA----------D-DG------P----LYYEEAKDAGYLVKDADGS 119 (317)
T ss_pred EEChhhCCCHHHHHHHHHHCCCEEEEEecCc---ee----------c-CC------c----hhHHHHHHCCeEEECCCCC
Confidence 3455554 79999999999999988876221 11 0 00 0 11345555554221
Q ss_pred EEeCC-CCC--CCCCCCCchhhHHHHHHHHHHHHHccCccceeeecCCC
Q 047217 156 LYLSP-WDR--HEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAK 201 (364)
Q Consensus 156 lYyS~-~dw--~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~ 201 (364)
.|.-. |.. ..+++. .++-.+.+..|+++++..+| |+.+|+|++-
T Consensus 120 ~~~~~~w~g~~~~~Dft-np~a~~ww~~~~~~~~~~~G-vdg~w~D~~E 166 (317)
T cd06594 120 PYLVDFGEFDCGVLDLT-NPAARDWFKQVIKEMLLDLG-LSGWMADFGE 166 (317)
T ss_pred eeeeccCCCCceeeecC-CHHHHHHHHHHHHHHhhhcC-CcEEEecCCC
Confidence 12111 110 011111 23567889999999988888 6999999764
No 45
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=83.78 E-value=7.8 Score=38.30 Aligned_cols=102 Identities=15% Similarity=0.275 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHcCCCEEEEee--eecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC---CC
Q 047217 89 NASQWVHAAKSAGFNRVILTA--KHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW---DR 163 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTa--KHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~---dw 163 (364)
+..+.++.+++.|.-.-++.. .++++ ..+|+.+..-|..| ..+++++..+++|+|+.++..+. +-
T Consensus 25 ~v~~~~~~~r~~~iP~d~i~lD~~~~~~-------~~~f~~d~~~FPdp---~~~~mi~~L~~~G~k~~~~i~P~v~~~~ 94 (339)
T cd06602 25 EVKEVVENMRAAGIPLDVQWNDIDYMDR-------RRDFTLDPVRFPGL---KMPEFVDELHANGQHYVPILDPAISANE 94 (339)
T ss_pred HHHHHHHHHHHhCCCcceEEECcccccC-------ccceecccccCCCc---cHHHHHHHHHHCCCEEEEEEeCccccCc
Confidence 366888888999988777654 33333 34554443223222 14799999999999999998752 10
Q ss_pred ---CCCCC------------------------CC-------chhhHHHHHHHHHHHHHccCccceeeecCCC
Q 047217 164 ---HEPSY------------------------GK-------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAK 201 (364)
Q Consensus 164 ---~~~~y------------------------~~-------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~ 201 (364)
..+.| +. .++-.+.+..+++++++.+| |+.+|+|++-
T Consensus 95 ~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~E 165 (339)
T cd06602 95 PTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVP-FDGLWIDMNE 165 (339)
T ss_pred CCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCC-CcEEEecCCC
Confidence 00000 00 11334677889999998888 5999999863
No 46
>PRK14706 glycogen branching enzyme; Provisional
Probab=83.44 E-value=25 Score=37.99 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=82.9
Q ss_pred HHHHHHHHHcCCCEEEEeeee-cCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE---eCC-CCC--
Q 047217 91 SQWVHAAKSAGFNRVILTAKH-HDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLY---LSP-WDR-- 163 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKH-HdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlY---yS~-~dw-- 163 (364)
+..++-+|+.|...|-|+--- |.+-.-|-=.+++|-...+-| | ..+=+++|+++|+++||++.+= -|. .|.
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~-g-~~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~ 248 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRL-G-TPEDFKYLVNHLHGLGIGVILDWVPGHFPTDESG 248 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCCCCCcCccccccccccc-C-CHHHHHHHHHHHHHCCCEEEEEecccccCcchhh
Confidence 455566899999998776542 112223544445553333333 2 2456999999999999999862 121 110
Q ss_pred ------------------CCCCCCC------chhhHHHHHHHHHHHHHccCccceeeecCCCCC-----C----------
Q 047217 164 ------------------HEPSYGK------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGE-----G---------- 204 (364)
Q Consensus 164 ------------------~~~~y~~------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~-----~---------- 204 (364)
+++.|+. .++-.+|+..-++-.++.|+ ||++-+|....- .
T Consensus 249 l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~-iDG~R~Dav~~~ly~d~~~~~~~~~~~g 327 (639)
T PRK14706 249 LAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFH-VDGLRVDAVASMLYLDFSRTEWVPNIHG 327 (639)
T ss_pred hhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhC-CCeEEEeeehheeecccCcccccccccC
Confidence 0111211 12456788888889999998 699999953210 0
Q ss_pred --Ccchh-hhHHHHHHHHHhhCCCeEEec
Q 047217 205 --EKDME-YFFDSWFSLIHQLQPRAVIFS 230 (364)
Q Consensus 205 --~~~~~-~~~~~~~~~i~~~qP~~vi~~ 230 (364)
..... -.+.++.+.|++..|++++..
T Consensus 328 g~~n~~a~~fl~~ln~~v~~~~p~~~~iA 356 (639)
T PRK14706 328 GRENLEAIAFLKRLNEVTHHMAPGCMMIA 356 (639)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 00011 245667789999999987764
No 47
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=83.10 E-value=6.7 Score=38.30 Aligned_cols=104 Identities=17% Similarity=0.306 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccC-CCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC-CCCC
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLW-PSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD-RHEP 166 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW-~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d-w~~~ 166 (364)
+..+.|+.+++.|.-.-|+.-. +|+.-. ..+..+|+.+..-|. | .++|++..++.|+|+.++..+.- -..+
T Consensus 30 ~v~~~~~~~r~~~iP~d~i~ld--~~~~~~~~~~~~~f~~d~~~FP----d-p~~mi~~L~~~g~k~~~~i~P~i~~~~~ 102 (317)
T cd06599 30 ALLEFIDKCREHDIPCDSFHLS--SGYTSIEGGKRYVFNWNKDRFP----D-PAAFVAKFHERGIRLAPNIKPGLLQDHP 102 (317)
T ss_pred HHHHHHHHHHHcCCCeeEEEEe--ccccccCCCceeeeecCcccCC----C-HHHHHHHHHHCCCEEEEEeCCcccCCCH
Confidence 3567888999999988777542 232211 122223333222121 3 56999999999999999876521 0011
Q ss_pred CC-------------------------C-------CchhhHHHHHHHHHHHHHccCccceeeecCC
Q 047217 167 SY-------------------------G-------KTLEYNEFYMAQMAELLTRYGEIKEVWLDGA 200 (364)
Q Consensus 167 ~y-------------------------~-------~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~ 200 (364)
.| + ..++-.+++..++++.+...| |+.+|+|++
T Consensus 103 ~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G-vdg~w~D~~ 167 (317)
T cd06599 103 RYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLG-IDSTWNDNN 167 (317)
T ss_pred HHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCC-CcEEEecCC
Confidence 00 0 012445778888988887777 699999976
No 48
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=81.99 E-value=5.5 Score=40.46 Aligned_cols=103 Identities=20% Similarity=0.480 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC-C-
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHE-P- 166 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~-~- 166 (364)
+..+.++.+++.|.-.-++..--. |-+...+|+.+..-|. | ..++++.+|++|+|++++.++.=... +
T Consensus 44 ~v~~~i~~~~~~~iP~d~~~iD~~-----~~~~~~~f~~d~~~FP----d-~~~~~~~l~~~G~~~~~~~~P~v~~~~~~ 113 (441)
T PF01055_consen 44 EVREVIDRYRSNGIPLDVIWIDDD-----YQDGYGDFTWDPERFP----D-PKQMIDELHDQGIKVVLWVHPFVSNDSPD 113 (441)
T ss_dssp HHHHHHHHHHHTT--EEEEEE-GG-----GSBTTBTT-B-TTTTT----T-HHHHHHHHHHTT-EEEEEEESEEETTTTB
T ss_pred HHHHHHHHHHHcCCCccceecccc-----cccccccccccccccc----c-hHHHHHhHhhCCcEEEEEeecccCCCCCc
Confidence 567888889999988877765422 3334445554432221 4 58999999999999999997621000 0
Q ss_pred ----------CC------C-----------------CchhhHHHHHHHHHHHHHccCccceeeecCCCC
Q 047217 167 ----------SY------G-----------------KTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKG 202 (364)
Q Consensus 167 ----------~y------~-----------------~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~ 202 (364)
.| + ..++-.+++..+++++++.|| ++.+|+|.+-.
T Consensus 114 ~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E~ 181 (441)
T PF01055_consen 114 YENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYG-VDGWWLDFGEP 181 (441)
T ss_dssp -HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST--SEEEEESTTT
T ss_pred chhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccC-CceEEeecCCc
Confidence 00 0 012446778899999999988 59999998543
No 49
>PRK14057 epimerase; Provisional
Probab=80.95 E-value=33 Score=32.72 Aligned_cols=106 Identities=18% Similarity=0.118 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCC---------eeEEEeC
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGV---------DLGLYLS 159 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Gl---------k~GlYyS 159 (364)
||++|++.+.++||.++.+=+.= + .+ +.+..+.+|++|+ +.|+-+.
T Consensus 86 ~P~~~i~~~~~aGad~It~H~Ea-----------~-------------~~-~~~~l~~Ir~~G~k~~~~~~~~kaGlAln 140 (254)
T PRK14057 86 DQWTAAQACVKAGAHCITLQAEG-----------D-------------IH-LHHTLSWLGQQTVPVIGGEMPVIRGISLC 140 (254)
T ss_pred CHHHHHHHHHHhCCCEEEEeecc-----------c-------------cC-HHHHHHHHHHcCCCcccccccceeEEEEC
Confidence 69999999999999999885550 0 12 3467788999997 6999887
Q ss_pred CC-------------CC-----CCCCCCCchhhHHHHHHH---HHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHH
Q 047217 160 PW-------------DR-----HEPSYGKTLEYNEFYMAQ---MAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSL 218 (364)
Q Consensus 160 ~~-------------dw-----~~~~y~~~~~y~~~~~~Q---l~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~ 218 (364)
+- |. -+|.|+. ..|.+...+. +++++...|.-..++.||+-. .+-...
T Consensus 141 P~Tp~e~i~~~l~~vD~VLvMtV~PGfgG-Q~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~----------~~ti~~ 209 (254)
T PRK14057 141 PATPLDVIIPILSDVEVIQLLAVNPGYGS-KMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLT----------QDQLPS 209 (254)
T ss_pred CCCCHHHHHHHHHhCCEEEEEEECCCCCc-hhccHHHHHHHHHHHHHHHhcCCCceEEEECCCC----------HHHHHH
Confidence 52 11 2355543 2465555544 445555545324689999743 122344
Q ss_pred HHhhCCCeEEec
Q 047217 219 IHQLQPRAVIFS 230 (364)
Q Consensus 219 i~~~qP~~vi~~ 230 (364)
+.+...|++|.+
T Consensus 210 l~~aGad~~V~G 221 (254)
T PRK14057 210 LIAQGIDRVVSG 221 (254)
T ss_pred HHHCCCCEEEEC
Confidence 455566777653
No 50
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=80.03 E-value=3.4 Score=36.45 Aligned_cols=94 Identities=19% Similarity=0.235 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCC
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSY 168 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y 168 (364)
.-...++++++.|++++++-+-. +..++.....-+... -.+-++++++.++++|+++++...........+
T Consensus 72 ~~~~~i~~a~~lg~~~i~~~~g~---~~~~~~~~~~~~~~~------~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~~ 142 (213)
T PF01261_consen 72 YLKKAIDLAKRLGAKYIVVHSGR---YPSGPEDDTEENWER------LAENLRELAEIAEEYGVRIALENHPGPFSETPF 142 (213)
T ss_dssp HHHHHHHHHHHHTBSEEEEECTT---ESSSTTSSHHHHHHH------HHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEES
T ss_pred HHHHHHHHHHHhCCCceeecCcc---cccccCCCHHHHHHH------HHHHHHHHHhhhhhhcceEEEecccCccccchh
Confidence 35789999999999999887432 111111111111111 146789999999999999999988654332111
Q ss_pred CCchhhHHHHHHHHHHHHHccCc-cceeeecCC
Q 047217 169 GKTLEYNEFYMAQMAELLTRYGE-IKEVWLDGA 200 (364)
Q Consensus 169 ~~~~~y~~~~~~Ql~EL~~~Yg~-i~~~WfDg~ 200 (364)
. ..++.++++..+. -..+-||-+
T Consensus 143 ~---------~~~~~~~l~~~~~~~~~i~~D~~ 166 (213)
T PF01261_consen 143 S---------VEEIYRLLEEVDSPNVGICFDTG 166 (213)
T ss_dssp S---------HHHHHHHHHHHTTTTEEEEEEHH
T ss_pred h---------HHHHHHHHhhcCCCcceEEEehH
Confidence 1 4677888888874 347788854
No 51
>PLN03244 alpha-amylase; Provisional
Probab=79.77 E-value=13 Score=40.81 Aligned_cols=93 Identities=19% Similarity=0.303 Sum_probs=58.0
Q ss_pred CChHHHHHHHHHHcCCeeEEEe--C-----------CCCC------------CCCCCCC------chhhHHHHHHHHHHH
Q 047217 137 GDVVAELALAAKEAGVDLGLYL--S-----------PWDR------------HEPSYGK------TLEYNEFYMAQMAEL 185 (364)
Q Consensus 137 rDlV~El~~A~rk~Glk~GlYy--S-----------~~dw------------~~~~y~~------~~~y~~~~~~Ql~EL 185 (364)
.|=+++|+++|+++||+|.|=. + .+|. +++.++. ..+-.+|++.-++-.
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yW 519 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWW 519 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHH
Confidence 4568999999999999998721 1 1111 1112221 124467888999999
Q ss_pred HHccCccceeeecCC-------CC------CC-------Ccchhh-hHHHHHHHHHhhCCCeEEec
Q 047217 186 LTRYGEIKEVWLDGA-------KG------EG-------EKDMEY-FFDSWFSLIHQLQPRAVIFS 230 (364)
Q Consensus 186 ~~~Yg~i~~~WfDg~-------~~------~~-------~~~~~~-~~~~~~~~i~~~qP~~vi~~ 230 (364)
++.|+ ||++-||+. .+ .. ...... .+..+.++|++..|+++...
T Consensus 520 leEyh-IDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~~ih~~~P~~itIA 584 (872)
T PLN03244 520 ITEYQ-IDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANEILHALHPKIITIA 584 (872)
T ss_pred HHHhC-cCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHHHHHHhCCCeEEEE
Confidence 99999 699999964 00 00 001112 23445578899999977553
No 52
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=79.37 E-value=3.1 Score=39.00 Aligned_cols=62 Identities=24% Similarity=0.292 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 85 PTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 85 p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
...++|-++.++++++|+.-+++=|-+-||-.|++- . ..+-+.+|++.||++||..||==|+
T Consensus 128 ~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~-------~-------~~~~L~~Fv~~ar~~gL~~aLAGSL 189 (235)
T PF04476_consen 128 VGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDH-------L-------SEEELAEFVAQARAHGLMCALAGSL 189 (235)
T ss_pred hcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhc-------C-------CHHHHHHHHHHHHHccchhhccccC
Confidence 346899999999999999999999999999887432 1 1477999999999999999998886
No 53
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=78.91 E-value=6.5 Score=35.44 Aligned_cols=109 Identities=15% Similarity=0.235 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCC
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPS 167 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~ 167 (364)
.+.+.| +.+|++|.+++++=+- +| +.| ..+ -...-.+.||+.||++|+|+=..--..
T Consensus 13 i~~~dw-~~vk~~Gi~faiikat--eG--------~~~-------~D~---~~~~n~~~A~~aGl~vG~Yhf~~~~~~-- 69 (192)
T cd06522 13 MSVADY-NKLKNYGVKAVIVKLT--EG--------TTY-------RNP---YAASQIANAKAAGLKVSAYHYAHYTSA-- 69 (192)
T ss_pred ccHHHH-HHHHHcCCCEEEEEEc--CC--------CCc-------cCh---HHHHHHHHHHHCCCeeEEEEEEecCCh--
Confidence 455677 6778899999999874 22 222 111 145778999999999999983210000
Q ss_pred CCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhh
Q 047217 168 YGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQL 222 (364)
Q Consensus 168 y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~ 222 (364)
.+...-.+++..+++..- +.+-..+++|...........-...++++.|++.
T Consensus 70 -~~a~~eA~~f~~~~~~~~--~~~~~~~~lD~E~~~~~~~~~~~~~~F~~~v~~~ 121 (192)
T cd06522 70 -ADAQAEARYFANTAKSLG--LSKNTVMVADMEDSSSSGNATANVNAFWQTMKAA 121 (192)
T ss_pred -HHHHHHHHHHHHHHHHcC--CCCCCceEEEeecCCCcchHHHHHHHHHHHHHHc
Confidence 001123455555554321 1111356788543221111111235566666654
No 54
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=78.88 E-value=8 Score=37.79 Aligned_cols=102 Identities=16% Similarity=0.309 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHcCCCEEEEeee--ecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC-CCCC
Q 047217 89 NASQWVHAAKSAGFNRVILTAK--HHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW-DRHE 165 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaK--HHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~-dw~~ 165 (364)
+..+.++.+++.|.-.=++..- |.++.. | .+|+.+..-|. | ..++++.++++|+|+.++..+. .-..
T Consensus 25 ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~-~----~~f~~d~~~FP----d-p~~mi~~L~~~G~kv~~~i~P~v~~~~ 94 (319)
T cd06591 25 ELLDVAKEYRKRGIPLDVIVQDWFYWPKQG-W----GEWKFDPERFP----D-PKAMVRELHEMNAELMISIWPTFGPET 94 (319)
T ss_pred HHHHHHHHHHHhCCCccEEEEechhhcCCC-c----eeEEEChhhCC----C-HHHHHHHHHHCCCEEEEEecCCcCCCC
Confidence 4678888888888777666544 222221 1 35544433232 4 4799999999999999987542 1000
Q ss_pred CC----------------------C-C-----C--chhhHHHHHHHHHHHHHccCccceeeecCCC
Q 047217 166 PS----------------------Y-G-----K--TLEYNEFYMAQMAELLTRYGEIKEVWLDGAK 201 (364)
Q Consensus 166 ~~----------------------y-~-----~--~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~ 201 (364)
+. + + + .++-.+.+..++++.+..+| |+.+|+|++-
T Consensus 95 ~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G-vdg~w~D~~E 159 (319)
T cd06591 95 ENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKG-VDAWWLDAAE 159 (319)
T ss_pred hhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCC-CcEEEecCCC
Confidence 00 0 0 0 12445677788887777788 5999999874
No 55
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=78.72 E-value=3.3 Score=39.60 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCC
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPS 167 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~ 167 (364)
..-...+.+||++|||-+|-.+- |...+.-.. .-+|+ .+.++|++.||+|-.=-.+ | |.
T Consensus 117 ~~G~~i~~~Ak~mGAktFVh~sf--------prhms~~~l------~~Rr~---~M~~~C~~lGi~fv~~taP-D---P~ 175 (275)
T PF12683_consen 117 SRGYTIVWAAKKMGAKTFVHYSF--------PRHMSYELL------ARRRD---IMEEACKDLGIKFVEVTAP-D---PT 175 (275)
T ss_dssp HHHHHHHHHHHHTT-S-EEEEEE--------TTGGGSHHH------HHHHH---HHHHHHHHCT--EEEEEE-------S
T ss_pred hccHHHHHHHHHcCCceEEEEec--------hhhcchHHH------HHHHH---HHHHHHHHcCCeEEEEeCC-C---CC
Confidence 34557889999999999987652 222231111 11344 5678999999999765543 1 11
Q ss_pred CCC-chhhHHHHHHHHHHHHHccCccceeeec
Q 047217 168 YGK-TLEYNEFYMAQMAELLTRYGEIKEVWLD 198 (364)
Q Consensus 168 y~~-~~~y~~~~~~Ql~EL~~~Yg~i~~~WfD 198 (364)
-.. ...-.+|.++.+...+.+||+ +.-+|-
T Consensus 176 sd~gv~gaqqfIlE~vp~~i~kYGk-dtaff~ 206 (275)
T PF12683_consen 176 SDVGVAGAQQFILEDVPKWIKKYGK-DTAFFC 206 (275)
T ss_dssp STCHHHHHHHHHHHHHHHHHHHH-S---EEEE
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhCC-ceeEEe
Confidence 011 125578999999999999999 666664
No 56
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=78.51 E-value=9.9 Score=35.74 Aligned_cols=92 Identities=14% Similarity=0.168 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCc---hhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcc------
Q 047217 137 GDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKT---LEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKD------ 207 (364)
Q Consensus 137 rDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~---~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~------ 207 (364)
.+.+-++++.|+++||++=.....|....|.|... .+..+.+...+++++++|+.- ..=+|-.++.....
T Consensus 15 ~~~~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~-i~~wdV~NE~~~~~~~~~~~ 93 (254)
T smart00633 15 FSGADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRYKGK-IYAWDVVNEALHDNGSGLRR 93 (254)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHhCCc-ceEEEEeeecccCCCccccc
Confidence 45677899999999999944333443344554332 244566788899999999862 11134333321100
Q ss_pred hhh-------hHHHHHHHHHhhCCCeEEe
Q 047217 208 MEY-------FFDSWFSLIHQLQPRAVIF 229 (364)
Q Consensus 208 ~~~-------~~~~~~~~i~~~qP~~vi~ 229 (364)
..| .....++.+|+..|++.++
T Consensus 94 ~~w~~~~G~~~i~~af~~ar~~~P~a~l~ 122 (254)
T smart00633 94 SVWYQILGEDYIEKAFRYAREADPDAKLF 122 (254)
T ss_pred chHHHhcChHHHHHHHHHHHHhCCCCEEE
Confidence 011 2456788999999987655
No 57
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=78.47 E-value=2 Score=40.34 Aligned_cols=130 Identities=21% Similarity=0.325 Sum_probs=77.6
Q ss_pred HHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe-----C---CC----
Q 047217 94 VHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL-----S---PW---- 161 (364)
Q Consensus 94 a~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy-----S---~~---- 161 (364)
++-+|+.|...|.|+--+..+..-|.=.+++|....+-+ |. .+=+++|+++|+++||++.+=+ | .|
T Consensus 10 Ldyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~-Gt-~~d~~~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~ 87 (316)
T PF00128_consen 10 LDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRF-GT-MEDFKELVDAAHKRGIKVILDVVPNHTSDDHPWFQDS 87 (316)
T ss_dssp HHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTT-BH-HHHHHHHHHHHHHTTCEEEEEEETSEEETTSHHHHHH
T ss_pred hHHHHHcCCCceecccccccccccccccceeeecccccc-ch-hhhhhhhhhccccccceEEEeeecccccccccccccc
Confidence 567899999999999887754422222334553333333 33 5669999999999999999833 1 01
Q ss_pred ---------C---CCC-----C----------CCCC--------------c-----hhhHHHHHHHHHHHHHccCcccee
Q 047217 162 ---------D---RHE-----P----------SYGK--------------T-----LEYNEFYMAQMAELLTRYGEIKEV 195 (364)
Q Consensus 162 ---------d---w~~-----~----------~y~~--------------~-----~~y~~~~~~Ql~EL~~~Yg~i~~~ 195 (364)
+ |.. + .|.. + +.-.+++...++..+ ++| ||++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~-~~g-iDGf 165 (316)
T PF00128_consen 88 LNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI-EEG-IDGF 165 (316)
T ss_dssp HTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH-HTT-ESEE
T ss_pred ccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh-hce-EeEE
Confidence 1 110 0 0000 0 012334444444444 456 8999
Q ss_pred eecCCCCCCCcchhhhHHHHHHHHHhhCCCeEEecC
Q 047217 196 WLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSD 231 (364)
Q Consensus 196 WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~~ 231 (364)
-+|...... .-.+.++.+.+++..|+.++...
T Consensus 166 R~D~~~~~~----~~~~~~~~~~~~~~~~~~~~i~E 197 (316)
T PF00128_consen 166 RLDAAKHIP----KEFWKEFRDEVKEEKPDFFLIGE 197 (316)
T ss_dssp EETTGGGSS----HHHHHHHHHHHHHHHTTSEEEEE
T ss_pred EEccccccc----hhhHHHHhhhhhhhccccceeee
Confidence 999864332 12467778888888899887653
No 58
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=78.18 E-value=11 Score=36.42 Aligned_cols=106 Identities=21% Similarity=0.303 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHcCCCEEEEeeee--cC-Ccc-cCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC---
Q 047217 89 NASQWVHAAKSAGFNRVILTAKH--HD-GFC-LWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW--- 161 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKH--Hd-GF~-lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~--- 161 (364)
+..+.|+.+++.|.-.=|+..-. |. +.. -......+|+.+..-|. | .++|++.+++.|+|+.+...+.
T Consensus 26 ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FP----d-p~~mi~~Lh~~G~k~v~~v~P~~~~ 100 (292)
T cd06595 26 EYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFP----D-PEKLLQDLHDRGLKVTLNLHPADGI 100 (292)
T ss_pred HHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCC----C-HHHHHHHHHHCCCEEEEEeCCCccc
Confidence 57889999999999988887742 21 100 00122334544433232 4 3799999999999999988763
Q ss_pred CCCCCCCC--------------------CchhhHHHHHHHHHHHHHccCccceeeecCC
Q 047217 162 DRHEPSYG--------------------KTLEYNEFYMAQMAELLTRYGEIKEVWLDGA 200 (364)
Q Consensus 162 dw~~~~y~--------------------~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~ 200 (364)
+-+.+.|. ..+++.+.+..++.+.+.++| |+.+|.|..
T Consensus 101 ~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~G-idg~W~D~~ 158 (292)
T cd06595 101 RAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQG-VDFWWLDWQ 158 (292)
T ss_pred CCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcC-CcEEEecCC
Confidence 21111111 013556667788877777888 699999964
No 59
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=77.80 E-value=6.4 Score=38.66 Aligned_cols=68 Identities=19% Similarity=0.154 Sum_probs=52.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS 159 (364)
-++.++++++.|...+|+.-|--+|.-.|+|+...-...... +..-.| +++|++.|+++||-+..-..
T Consensus 15 ~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~-~~~i~D-~~~l~~~l~e~gIY~IARIv 82 (316)
T PF13200_consen 15 LDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAV-KPYIKD-LKALVKKLKEHGIYPIARIV 82 (316)
T ss_pred HHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccc-cccccC-HHHHHHHHHHCCCEEEEEEE
Confidence 478899999999999999999999999999988654221110 111134 78999999999999887554
No 60
>PLN02808 alpha-galactosidase
Probab=76.49 E-value=44 Score=33.78 Aligned_cols=111 Identities=16% Similarity=0.191 Sum_probs=61.8
Q ss_pred HHHcCCCEEEEeeeecCCcccCCCCCCC-C-ccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC-CCCCCchh
Q 047217 97 AKSAGFNRVILTAKHHDGFCLWPSEYTD-Y-SVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHE-PSYGKTLE 173 (364)
Q Consensus 97 ~k~aGakYvvlTaKHHdGF~lW~S~~t~-~-~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~-~~y~~~~~ 173 (364)
++++|-+||++ =|| |-.+.-+ . +..-.|-+-| +=++.|++.++++|||||||-..-...- ..|.-...
T Consensus 63 l~~~Gy~yv~i----Dd~---W~~~~rd~~G~~~~d~~rFP--~G~~~lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~ 133 (386)
T PLN02808 63 LAALGYKYINL----DDC---WAELKRDSQGNLVPKASTFP--SGIKALADYVHSKGLKLGIYSDAGTLTCSKTMPGSLG 133 (386)
T ss_pred hHHhCCEEEEE----cCC---cCCCCcCCCCCEeeChhhcC--ccHHHHHHHHHHCCCceEEEecCCccccCCCCCcchH
Confidence 57889999998 334 4333211 1 1111111222 2299999999999999999997632111 01111111
Q ss_pred hHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhh
Q 047217 174 YNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQL 222 (364)
Q Consensus 174 y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~ 222 (364)
+.+|..++...+| +|.+=.|+...... ...-.+..+.+.+.+.
T Consensus 134 ----~e~~DA~~fA~WG-vDylK~D~C~~~~~-~~~~~y~~m~~AL~~t 176 (386)
T PLN02808 134 ----HEEQDAKTFASWG-IDYLKYDNCENTGT-SPQERYPKMSKALLNS 176 (386)
T ss_pred ----HHHHHHHHHHHhC-CCEEeecCcCCCCc-cHHHHHHHHHHHHHHh
Confidence 3355666666777 47787887654322 1222355666666554
No 61
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=74.43 E-value=32 Score=40.04 Aligned_cols=134 Identities=16% Similarity=0.242 Sum_probs=78.7
Q ss_pred HHHHHHHHcCCCEEEEeeeecC---------Ccc-cCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE---Ee
Q 047217 92 QWVHAAKSAGFNRVILTAKHHD---------GFC-LWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL---YL 158 (364)
Q Consensus 92 ~Wa~l~k~aGakYvvlTaKHHd---------GF~-lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl---Yy 158 (364)
+-++-+|+.|...|-|+--|.- |.. .|-=...+|......|.....+=+++|+++|+++||++.+ |-
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~N 270 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFN 270 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 5677899999999988766531 100 1222223443222222101346699999999999999987 22
Q ss_pred CCCCCC------------CC-----------CC------CCc-----hhhHHHHHHHHHHHHHccCccceeeecCCCCCC
Q 047217 159 SPWDRH------------EP-----------SY------GKT-----LEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEG 204 (364)
Q Consensus 159 S~~dw~------------~~-----------~y------~~~-----~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~ 204 (364)
|.-+.+ +. .| ++. +.-.+++...++-.++ || ||++=||-.....
T Consensus 271 Ht~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~g-VDGfRfDla~~l~ 348 (1221)
T PRK14510 271 HTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RG-VDGFRLDLADELA 348 (1221)
T ss_pred cccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hC-CCEEEEechhhhc
Confidence 211000 00 01 111 1334667777888888 87 7999999654331
Q ss_pred CcchhhhHHHHHHHHHhhCCCeEE
Q 047217 205 EKDMEYFFDSWFSLIHQLQPRAVI 228 (364)
Q Consensus 205 ~~~~~~~~~~~~~~i~~~qP~~vi 228 (364)
.. ..-.+.++...++++.||.++
T Consensus 349 r~-~~~f~~~~~~~l~ai~~d~~l 371 (1221)
T PRK14510 349 RE-PDGFIDEFRQFLKAMDQDPVL 371 (1221)
T ss_pred cC-ccchHHHHHHHHHHhCCCcCc
Confidence 10 111346777889999999876
No 62
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=74.29 E-value=16 Score=36.03 Aligned_cols=99 Identities=15% Similarity=0.283 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHcCCCEEEEeee--ecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC
Q 047217 88 LNASQWVHAAKSAGFNRVILTAK--HHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHE 165 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaK--HHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~ 165 (364)
-+..+.|+.+++.|.-.=++... +.++++ .|+.+..-|. | .++|++.++++|+|+.++..+.--.+
T Consensus 24 ~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~-------~f~~d~~~fP----d-p~~m~~~l~~~g~~~~~~~~P~v~~~ 91 (339)
T cd06604 24 EEVREIADEFRERDIPCDAIYLDIDYMDGYR-------VFTWDKERFP----D-PKELIKELHEQGFKVVTIIDPGVKVD 91 (339)
T ss_pred HHHHHHHHHHHHhCCCcceEEECchhhCCCC-------ceeeccccCC----C-HHHHHHHHHHCCCEEEEEEeCceeCC
Confidence 34577888888999877666553 334433 3322221121 3 47999999999999999887531111
Q ss_pred C---CC------------------------CC-------chhhHHHHHHHHHHHHHccCccceeeecCC
Q 047217 166 P---SY------------------------GK-------TLEYNEFYMAQMAELLTRYGEIKEVWLDGA 200 (364)
Q Consensus 166 ~---~y------------------------~~-------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~ 200 (364)
+ .| +. .++-.+++..++++++ ++| |+.+|+|.+
T Consensus 92 ~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~-~~G-vdg~w~D~~ 158 (339)
T cd06604 92 PGYDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV-DLG-VDGIWNDMN 158 (339)
T ss_pred CCChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh-hCC-CceEeecCC
Confidence 1 01 00 1233467888888887 566 699999975
No 63
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=73.46 E-value=6.9 Score=35.30 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=37.0
Q ss_pred CCHHHH-HHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 047217 88 LNASQW-VHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 88 fD~~~W-a~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS 159 (364)
.||+.+ ++.+.++||.++++-.. + + ..-+.++.+.||++|+++++-.+
T Consensus 62 ~d~~~~~~~~~~~~Gad~i~vh~~-----~------------------~-~~~~~~~i~~~~~~g~~~~~~~~ 110 (206)
T TIGR03128 62 MDAGEYEAEQAFAAGADIVTVLGV-----A------------------D-DATIKGAVKAAKKHGKEVQVDLI 110 (206)
T ss_pred ccchHHHHHHHHHcCCCEEEEecc-----C------------------C-HHHHHHHHHHHHHcCCEEEEEec
Confidence 388888 99999999999885322 0 0 12367899999999999999753
No 64
>PTZ00445 p36-lilke protein; Provisional
Probab=72.66 E-value=9.2 Score=35.49 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCCEEEE------eeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE-EeC
Q 047217 90 ASQWVHAAKSAGFNRVIL------TAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL-YLS 159 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvl------TaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl-YyS 159 (364)
++..|+++++.|-|-|++ +++|-.|+.-... .+-.+..+ + +.-+++|.+++++.||++.+ -||
T Consensus 31 ~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~--~~~~~~~~----~-tpefk~~~~~l~~~~I~v~VVTfS 100 (219)
T PTZ00445 31 ADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDN--DDIRVLTS----V-TPDFKILGKRLKNSNIKISVVTFS 100 (219)
T ss_pred HHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCc--chhhhhcc----C-CHHHHHHHHHHHHCCCeEEEEEcc
Confidence 677899999999999975 8999999543321 11122211 1 34488999999999999987 566
No 65
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=71.81 E-value=56 Score=32.28 Aligned_cols=111 Identities=20% Similarity=0.328 Sum_probs=67.1
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeee-cCC--cccCC-CCCC------CCccccCCCCC-CC-CChHHHHHHHHHHcCCeeE
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKH-HDG--FCLWP-SEYT------DYSVKSSEWKN-GT-GDVVAELALAAKEAGVDLG 155 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKH-HdG--F~lW~-S~~t------~~~v~~~p~~g-~k-rDlV~El~~A~rk~Glk~G 155 (364)
-+..+.|+.+++.|.-.-|+.-.. ++. |.+|. -++. +++....-|.. .+ -| .++|++.+++.|+|+.
T Consensus 24 ~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPd-p~~mi~~Lh~~G~kv~ 102 (340)
T cd06597 24 AEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPN-PKGMIDELHEQGVKVL 102 (340)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCC-HHHHHHHHHHCCCEEE
Confidence 457889999999999888876642 121 33554 2221 12111110100 00 13 7799999999999999
Q ss_pred EEeCCC-CC-CCC------------------------CC-------CC-------chhhHHHHHHHHHHHHHccCcccee
Q 047217 156 LYLSPW-DR-HEP------------------------SY-------GK-------TLEYNEFYMAQMAELLTRYGEIKEV 195 (364)
Q Consensus 156 lYyS~~-dw-~~~------------------------~y-------~~-------~~~y~~~~~~Ql~EL~~~Yg~i~~~ 195 (364)
++..+. +- ..+ .| +. .++-.+.+..+++++++++| |+.+
T Consensus 103 l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~G-idg~ 181 (340)
T cd06597 103 LWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDELG-IDGF 181 (340)
T ss_pred EEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHHhcC-CcEE
Confidence 876542 10 000 01 00 12335678899999998899 6999
Q ss_pred eecCC
Q 047217 196 WLDGA 200 (364)
Q Consensus 196 WfDg~ 200 (364)
|+|++
T Consensus 182 w~D~~ 186 (340)
T cd06597 182 KTDGG 186 (340)
T ss_pred EecCC
Confidence 99976
No 66
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=71.70 E-value=9.2 Score=34.00 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=53.9
Q ss_pred HHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe-CCCCCCCCCCCCc
Q 047217 93 WVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL-SPWDRHEPSYGKT 171 (364)
Q Consensus 93 Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy-S~~dw~~~~y~~~ 171 (364)
|...++++|++++++-+-. | +.| + .+ -...-.++||+.||++|+|+ +..... .+.
T Consensus 14 ~~~~~~~~g~~fviikate--G--------~~~-~------D~---~f~~n~~~a~~aGl~vG~Yhf~~~~~~----~~a 69 (177)
T cd06523 14 WDYDTLSKQLDLVIIRVQY--G--------SNY-V------DL---KYKNNIKEFKKRGIPFGVYAFARGTST----ADA 69 (177)
T ss_pred HHHHHHhCCCCEEEEEEeC--C--------Ccc-c------CH---HHHHHHHHHHHcCCCeEEEEEeccCCH----HHH
Confidence 5233567999999999864 2 111 1 11 15577899999999999996 321100 001
Q ss_pred hhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhh
Q 047217 172 LEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQL 222 (364)
Q Consensus 172 ~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~ 222 (364)
..-.+++..+++. .+ ..+++|-...... ...-...++.+.|++.
T Consensus 70 ~~eA~~f~~~~~~-----~~-~~~~lD~E~~~~~-~~~~~~~~f~~~v~~~ 113 (177)
T cd06523 70 KAEARDFYNRANK-----KP-TFYVLDVEVTSMS-DMNAGVQAFISELRRL 113 (177)
T ss_pred HHHHHHHHHHhcC-----CC-ceEEEeeccCCcc-hHHHHHHHHHHHHHHc
Confidence 1223455444433 34 4588996432211 1112245566666654
No 67
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=71.46 E-value=10 Score=34.18 Aligned_cols=42 Identities=21% Similarity=0.160 Sum_probs=32.1
Q ss_pred HHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 97 AKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 97 ~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
+|++|.++|++=+-+-.+ | ..+ -..+-.+.|++.||++|+|+
T Consensus 17 ~~~~g~~fviiKateG~~----------~-------~d~---~~~~n~~~A~~aGl~vG~Yh 58 (196)
T cd06415 17 YGQAGAKFAIVKISEGTN----------Y-------VNP---KASAQVSSAIANGKMTGGYH 58 (196)
T ss_pred HHhCCCcEEEEEEcCCCc----------c-------CCc---cHHHHHHHHHHCCCeeEEEE
Confidence 789999999998854322 2 111 25688899999999999998
No 68
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=70.73 E-value=9.2 Score=34.44 Aligned_cols=63 Identities=25% Similarity=0.529 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCCCE--EEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC
Q 047217 90 ASQWVHAAKSAGFNR--VILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHE 165 (364)
Q Consensus 90 ~~~Wa~l~k~aGakY--vvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~ 165 (364)
++..++.++..++++ ++|-....+ +.|.+..+ ..++.+.+|.++++++|.++|||-|..+|.+
T Consensus 73 a~~f~~~~~~~~~~~~~i~lDiE~~~--~~~~~~~~-----------~~~~~~~~f~~~~~~~G~~~~iYt~~~~w~~ 137 (196)
T cd06416 73 VQTFLQYLKANGIKYGTVWIDIEQNP--CQWSSDVA-----------SNCQFLQELVSAAKALGLKVGIYSSQYDWSQ 137 (196)
T ss_pred HHHHHHHHHhCCCceeEEEEEEecCC--CCCcCCHH-----------HHHHHHHHHHHHHHHhCCeEEEEcCcchhcc
Confidence 566677777767765 456555542 23332111 1258899999999999999999999876653
No 69
>PLN03231 putative alpha-galactosidase; Provisional
Probab=70.72 E-value=38 Score=33.86 Aligned_cols=87 Identities=14% Similarity=0.130 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHcCCeeEEEeCCCCC------CCCCCCC-----------c--------------------hhh-HHHHHH
Q 047217 139 VVAELALAAKEAGVDLGLYLSPWDR------HEPSYGK-----------T--------------------LEY-NEFYMA 180 (364)
Q Consensus 139 lV~El~~A~rk~Glk~GlYyS~~dw------~~~~y~~-----------~--------------------~~y-~~~~~~ 180 (364)
=++.|++-++..|||||||.+..-. ..|..|. + ..+ .+-|..
T Consensus 87 G~k~lADyvHs~GLKfGIY~~~G~~tca~~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~~ 166 (357)
T PLN03231 87 GFAPIAAKVHALGLKLGIHVMRGISTTAVKKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFIQ 166 (357)
T ss_pred CcHHHHHHHHhCCcceEEEecCCccchhcccCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHHH
Confidence 4899999999999999999875211 1111110 0 001 133567
Q ss_pred HHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeE
Q 047217 181 QMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAV 227 (364)
Q Consensus 181 Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~v 227 (364)
++.++....| ||.|=.|....... ...-.+.++.+.|++.--.++
T Consensus 167 ~~a~~fA~WG-VDylK~D~c~~~~~-~~~~~y~~m~~AL~~tGRpIv 211 (357)
T PLN03231 167 SLYDQYASWG-IDFIKHDCVFGAEN-PQLDEILTVSKAIRNSGRPMI 211 (357)
T ss_pred HHHHHHHHhC-CCEEeecccCCCCc-ccHHHHHHHHHHHHHhCCCeE
Confidence 7788888888 57777785433211 112235667777766433343
No 70
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=70.38 E-value=9.7 Score=34.22 Aligned_cols=47 Identities=28% Similarity=0.329 Sum_probs=34.4
Q ss_pred HHHH---HHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 047217 93 WVHA---AKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 93 Wa~l---~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS 159 (364)
|.++ +|++|++++++-+.. | +.| .. .-..+-.+.|++.||++|+|+=
T Consensus 14 ~~~~~~~~k~~gi~fviikate--G--------~~~-------~D---~~~~~n~~~a~~aGl~~G~Yhf 63 (194)
T cd06524 14 WQKVKAKVKDSPVAFVFIKATE--G--------VDI-------VD---PDFPTNWEGAKEAGIIRGAYHF 63 (194)
T ss_pred hhhhhhhhhhcCccEEEEEecC--C--------CCc-------cC---hHHHHHHHHHHHcCCceEEEEE
Confidence 6665 889999999998843 2 222 11 2256788999999999999963
No 71
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=69.86 E-value=23 Score=34.58 Aligned_cols=105 Identities=10% Similarity=0.159 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHcCCCEEEEeee--ecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC-CCC
Q 047217 89 NASQWVHAAKSAGFNRVILTAK--HHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD-RHE 165 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaK--HHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d-w~~ 165 (364)
+..+.++.+++.|.--=++... +++... -..+..+|+.+..-|. | .++|++.++++|+|+.++..+.- -..
T Consensus 25 ~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~-~~~~~~~f~wd~~~FP----d-p~~mi~~L~~~G~k~~~~v~P~v~~~~ 98 (317)
T cd06598 25 EVDDTIKTLREKDFPLDAAILDLYWFGKDI-DKGHMGNLDWDRKAFP----D-PAGMIADLAKKGVKTIVITEPFVLKNS 98 (317)
T ss_pred HHHHHHHHHHHhCCCceEEEEechhhcCcc-cCCceeeeEeccccCC----C-HHHHHHHHHHcCCcEEEEEcCcccCCc
Confidence 4578888889999887776554 222100 0122334444333232 4 36899999999999999886521 011
Q ss_pred CCC-------------------------CC-------chhhHHHHHHHHHHHHHccCccceeeecCCC
Q 047217 166 PSY-------------------------GK-------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAK 201 (364)
Q Consensus 166 ~~y-------------------------~~-------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~ 201 (364)
+.| +. .++-.+.+..+++++ ..+| |+.+|+|.+-
T Consensus 99 ~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~-~~~G-vdg~w~D~~E 164 (317)
T cd06598 99 KNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKL-IDQG-VTGWWGDLGE 164 (317)
T ss_pred hhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHh-hhCC-ccEEEecCCC
Confidence 111 00 124457788888887 4566 6999999864
No 72
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=68.90 E-value=27 Score=31.25 Aligned_cols=75 Identities=17% Similarity=0.116 Sum_probs=51.3
Q ss_pred CCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHH
Q 047217 136 TGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSW 215 (364)
Q Consensus 136 krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~ 215 (364)
.-|++.+|.+.|.++|+++.++=+. ++ ....-.+-|..+|..+...-.+|.... -+-+++
T Consensus 33 G~dl~~~l~~~~~~~~~~vfllG~~-----------~~---v~~~~~~~l~~~yP~l~i~g~~g~f~~------~~~~~i 92 (177)
T TIGR00696 33 GPDLMEELCQRAGKEKLPIFLYGGK-----------PD---VLQQLKVKLIKEYPKLKIVGAFGPLEP------EERKAA 92 (177)
T ss_pred hHHHHHHHHHHHHHcCCeEEEECCC-----------HH---HHHHHHHHHHHHCCCCEEEEECCCCCh------HHHHHH
Confidence 3699999999999999998887653 11 122223445568987665555654321 123568
Q ss_pred HHHHHhhCCCeEEec
Q 047217 216 FSLIHQLQPRAVIFS 230 (364)
Q Consensus 216 ~~~i~~~qP~~vi~~ 230 (364)
.+.|++.+||+|+..
T Consensus 93 ~~~I~~s~~dil~Vg 107 (177)
T TIGR00696 93 LAKIARSGAGIVFVG 107 (177)
T ss_pred HHHHHHcCCCEEEEE
Confidence 899999999998764
No 73
>PRK02227 hypothetical protein; Provisional
Probab=68.71 E-value=6 Score=37.25 Aligned_cols=60 Identities=23% Similarity=0.265 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
.-+|..+.+.++++|+.-+++=|---||-.|++ + . .-+-+.+|++.||++||..||==|+
T Consensus 130 ~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd-----~--l-------~~~~L~~Fv~~ar~~Gl~~gLAGSL 189 (238)
T PRK02227 130 SVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFD-----H--M-------DEEELAEFVAEARSHGLMSALAGSL 189 (238)
T ss_pred CCChHHHHHHHHHcCCCEEEEecccCCCcchHh-----h--C-------CHHHHHHHHHHHHHcccHhHhcccC
Confidence 458999999999999999999888777777633 2 1 1477999999999999999998886
No 74
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=68.51 E-value=12 Score=35.20 Aligned_cols=45 Identities=31% Similarity=0.455 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
+.+++.++++|+..+++.--| + +-..++.++||++||+.++..++
T Consensus 94 ~~fi~~~~~aG~~giiipDl~--------------------~-----ee~~~~~~~~~~~g~~~i~~i~P 138 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLP--------------------P-----EEAEEFREAAKEYGLDLIFLVAP 138 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCC--------------------H-----HHHHHHHHHHHHcCCcEEEEeCC
Confidence 999999999999999885221 1 23679999999999999999996
No 75
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=67.11 E-value=6.3 Score=37.25 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCC
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGK 170 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~ 170 (364)
++.++++++.|++++++. |+..|.....+-...+ -.+-++++++.++++|+++++=-+... +..
T Consensus 102 ~~~i~~a~~lG~~~i~~~-----~~~~~~~~~~~~~~~~------~~~~l~~l~~~A~~~GV~i~iE~~~~~-----~~~ 165 (283)
T PRK13209 102 RKAIQLAQDLGIRVIQLA-----GYDVYYEQANNETRRR------FIDGLKESVELASRASVTLAFEIMDTP-----FMN 165 (283)
T ss_pred HHHHHHHHHcCCCEEEEC-----CccccccccHHHHHHH------HHHHHHHHHHHHHHhCCEEEEeecCCc-----ccC
Confidence 468899999999999873 4443332211111111 035678999999999999988543211 111
Q ss_pred chhhHHHHHHHHHHHHHccC-ccceeeecCCC
Q 047217 171 TLEYNEFYMAQMAELLTRYG-EIKEVWLDGAK 201 (364)
Q Consensus 171 ~~~y~~~~~~Ql~EL~~~Yg-~i~~~WfDg~~ 201 (364)
+ ..++.++++..+ |--.+.+|-++
T Consensus 166 ~-------~~~~~~ll~~v~~~~lgl~~D~~h 190 (283)
T PRK13209 166 S-------ISKALGYAHYLNSPWFQLYPDIGN 190 (283)
T ss_pred C-------HHHHHHHHHHhCCCccceEeccch
Confidence 1 123455555544 33467788653
No 76
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=67.07 E-value=13 Score=35.17 Aligned_cols=55 Identities=22% Similarity=0.276 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 85 PTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 85 p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
-+.+++.+.++.+.+.|++.+++|.-+-||-+- |+..|+++|++++. ..-+.+|.
T Consensus 144 ~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~----------------G~n~~l~~~l~~~~-----~ipviaSG 198 (241)
T COG0106 144 DSGVELEELAKRLEEVGLAHILYTDISRDGTLS----------------GPNVDLVKELAEAV-----DIPVIASG 198 (241)
T ss_pred cccCCHHHHHHHHHhcCCCeEEEEecccccccC----------------CCCHHHHHHHHHHh-----CcCEEEec
Confidence 457999999999999999999999999999773 77899999999997 44455663
No 77
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=66.25 E-value=12 Score=39.33 Aligned_cols=63 Identities=16% Similarity=0.067 Sum_probs=40.6
Q ss_pred HHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCC-ccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 047217 92 QWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDY-SVKSSEWKNGTGDVVAELALAAKEAGVDLGLY 157 (364)
Q Consensus 92 ~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~-~v~~~p~~g~krDlV~El~~A~rk~Glk~GlY 157 (364)
+-++-+++.|.+-|.|+.-+-.+-.-..=.+++| .++ |.-|. .+-+++|+++|+++||++.+=
T Consensus 31 ~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id--~~~Gt-~~~~~~lv~~ah~~gi~vilD 94 (543)
T TIGR02403 31 EKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAIN--PLFGT-MADFEELVSEAKKRNIKIMLD 94 (543)
T ss_pred HhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccC--cccCC-HHHHHHHHHHHHHCCCEEEEE
Confidence 4457889999999999876532211001011333 332 22233 467999999999999999984
No 78
>PRK12677 xylose isomerase; Provisional
Probab=65.29 E-value=88 Score=31.54 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
..|+++.++.++++|++.|-+ |.+...-|++... -+...++++.++++++||++...-
T Consensus 30 ~~~~~E~v~~~a~~Gf~gVEl---h~~~l~p~~~~~~-----------~~~~~~~~lk~~l~~~GL~v~~v~ 87 (384)
T PRK12677 30 PLDPVEAVHKLAELGAYGVTF---HDDDLVPFGATDA-----------ERDRIIKRFKKALDETGLVVPMVT 87 (384)
T ss_pred CCCHHHHHHHHHHhCCCEEEe---cccccCCCCCChh-----------hhHHHHHHHHHHHHHcCCeeEEEe
Confidence 479999999999999999977 5444332322110 012368999999999999988653
No 79
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=65.24 E-value=1e+02 Score=27.54 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 92 QWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 92 ~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
.|- .+|++|.+++++-+.- |-. + ++ --..+-.+.|++.||++|+|+-.
T Consensus 14 ~w~-~vk~~g~~fv~ikate--g~~--------~-~D---------~~f~~n~~~A~~aGl~~G~Yhf~ 61 (196)
T cd06416 14 TFQ-CLKNNGYSFAIIRAYR--SNG--------S-FD---------PNSVTNIKNARAAGLSTDVYFFP 61 (196)
T ss_pred hhh-HHHhCCceEEEEEEEc--cCC--------c-cC---------hHHHHHHHHHHHcCCccceEEEe
Confidence 344 3467899999998742 211 1 11 11457788999999999999753
No 80
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=64.93 E-value=16 Score=33.13 Aligned_cols=44 Identities=27% Similarity=0.293 Sum_probs=31.5
Q ss_pred HHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 047217 96 AAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 96 l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS 159 (364)
.+|++|++++++=+- +| +.| ..+ -..+-.+.||+.||++|+|+=
T Consensus 17 ~vk~~g~~fviiKat--eG--------~~~-------~D~---~~~~n~~~A~~aGl~~G~Yhf 60 (199)
T cd06412 17 GAAANGARFAYVKAT--EG--------TSY-------TNP---RFSSQYNGAYNAGLIRGAYHF 60 (199)
T ss_pred HHHhCCCeEEEEEEe--cC--------CCc-------cCh---hHHHHHHHHHHcCCceEEEEE
Confidence 467789999999884 22 222 111 155778889999999999984
No 81
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=64.77 E-value=18 Score=34.38 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
+..+.+++.++++|+..+++-- -|. +-..++.++||++||++++-.++
T Consensus 102 ~G~e~f~~~~~~aGvdgviipD--------------------lp~-----ee~~~~~~~~~~~gl~~i~lv~P 149 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVAD--------------------LPL-----EESGDLVEAAKKHGVKPIFLVAP 149 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECC--------------------CCh-----HHHHHHHHHHHHCCCcEEEEECC
Confidence 3449999999999999998851 021 34679999999999999999986
No 82
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=63.24 E-value=20 Score=32.48 Aligned_cols=45 Identities=22% Similarity=0.274 Sum_probs=32.2
Q ss_pred HHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 93 WVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 93 Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
|.+ +|+.|.++|++-| |+-+.|. -+-..+-.+.||+.||++|+|+
T Consensus 22 w~~-v~~~gi~Fv~iKA----------TEG~~~~----------D~~f~~n~~~A~~~Gl~vGaYH 66 (190)
T cd06419 22 FNS-LQSNGISFVYLRA----------TQGASYF----------DDNFLSNFSRAQGTGLSVGVIH 66 (190)
T ss_pred HHH-HHhCCCeEEEEEe----------ecCCCcc----------ChhHHHHHHHHHHCCCCEEEEE
Confidence 555 4678999999976 3333331 1225678899999999999995
No 83
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=62.76 E-value=4.4 Score=38.35 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCC
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYG 169 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~ 169 (364)
....++++++.|++++++..-+..+ .+.-..+.. -.+.++++++.++++||++++=...+.-. .+.
T Consensus 87 ~~~~i~~A~~lG~~~v~~~~g~~~~----~~~~~~~~~--------~~~~l~~l~~~a~~~gi~l~lEn~~~~~~--~~~ 152 (279)
T cd00019 87 LKDEIERCEELGIRLLVFHPGSYLG----QSKEEGLKR--------VIEALNELIDKAETKGVVIALETMAGQGN--EIG 152 (279)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCC----CCHHHHHHH--------HHHHHHHHHHhccCCCCEEEEeCCCCCCC--CCC
Confidence 4789999999999999884433221 000001111 14778999999999999998855432110 111
Q ss_pred CchhhHHHHHHHHHHHHHccC--ccceeeecCCC
Q 047217 170 KTLEYNEFYMAQMAELLTRYG--EIKEVWLDGAK 201 (364)
Q Consensus 170 ~~~~y~~~~~~Ql~EL~~~Yg--~i~~~WfDg~~ 201 (364)
. ...++.++++..+ |--.+=+|-+.
T Consensus 153 ~-------t~~~~~~li~~v~~~~~~g~~lD~~h 179 (279)
T cd00019 153 S-------SFEELKEIIDLIKEKPRVGVCIDTCH 179 (279)
T ss_pred C-------CHHHHHHHHHhcCCCCCeEEEEEhhh
Confidence 1 2245566666654 32456677553
No 84
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=61.90 E-value=19 Score=32.10 Aligned_cols=100 Identities=19% Similarity=0.208 Sum_probs=54.8
Q ss_pred HHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCch
Q 047217 93 WVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTL 172 (364)
Q Consensus 93 Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~ 172 (364)
|-+ +|++|.++|++=+-. | +.| .. .-...-.+.|++.||++|+|+=... -.+..
T Consensus 14 ~~~-~k~~gi~fviiKate--G--------~~y-------~D---~~~~~~~~~a~~aGl~~G~Yhy~~~-----~~~a~ 67 (184)
T cd06525 14 FNA-VKDSGVEVVYIKATE--G--------TTF-------VD---SYFNENYNGAKAAGLKVGFYHFLVG-----TSNPE 67 (184)
T ss_pred HHH-HHhCCCeEEEEEecC--C--------Ccc-------cC---HhHHHHHHHHHHCCCceEEEEEeeC-----CCCHH
Confidence 444 467899999998842 1 222 11 2256778999999999999983211 01112
Q ss_pred hhHHHHHHHHHHHHHccCccceeeecCCCCCCCc--chhhhHHHHHHHHHhh
Q 047217 173 EYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEK--DMEYFFDSWFSLIHQL 222 (364)
Q Consensus 173 ~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~--~~~~~~~~~~~~i~~~ 222 (364)
.-.+++..+++ .++.-..+++|-....... ...-...++.+.|++.
T Consensus 68 ~qA~~f~~~~~----~~~~~~~~~lD~E~~~~~~~~~~~~~~~~f~~~v~~~ 115 (184)
T cd06525 68 EQAENFYNTIK----GKKMDLKPALDVEVNFGLSKDELNDYVLRFIEEFEKL 115 (184)
T ss_pred HHHHHHHHhcc----ccCCCCCeEEEEecCCCCCHHHHHHHHHHHHHHHHHH
Confidence 23344545444 3443235678864322111 1112345666777664
No 85
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=61.69 E-value=54 Score=28.92 Aligned_cols=75 Identities=20% Similarity=0.119 Sum_probs=52.0
Q ss_pred CCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccceee-ecCCCCCCCcchhhhHHH
Q 047217 136 TGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVW-LDGAKGEGEKDMEYFFDS 214 (364)
Q Consensus 136 krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~W-fDg~~~~~~~~~~~~~~~ 214 (364)
.-|++.+|.+.+.+++.++.++=+. ++..+-. .+.|..+|..+...- .||..... .-++
T Consensus 31 g~dl~~~ll~~~~~~~~~v~llG~~-----------~~~~~~~---~~~l~~~yp~l~i~g~~~g~~~~~------~~~~ 90 (171)
T cd06533 31 GSDLMPALLELAAQKGLRVFLLGAK-----------PEVLEKA---AERLRARYPGLKIVGYHHGYFGPE------EEEE 90 (171)
T ss_pred cHHHHHHHHHHHHHcCCeEEEECCC-----------HHHHHHH---HHHHHHHCCCcEEEEecCCCCChh------hHHH
Confidence 3699999999999999999988663 2222222 234566888877665 56654321 1234
Q ss_pred HHHHHHhhCCCeEEec
Q 047217 215 WFSLIHQLQPRAVIFS 230 (364)
Q Consensus 215 ~~~~i~~~qP~~vi~~ 230 (364)
+.+.|++.+||+|+..
T Consensus 91 i~~~I~~~~pdiv~vg 106 (171)
T cd06533 91 IIERINASGADILFVG 106 (171)
T ss_pred HHHHHHHcCCCEEEEE
Confidence 7889999999998764
No 86
>PRK07279 dnaE DNA polymerase III DnaE; Reviewed
Probab=61.68 E-value=22 Score=40.43 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=45.5
Q ss_pred EEEEeCCCcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCC
Q 047217 59 LFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGD 138 (364)
Q Consensus 59 iFiHwG~~s~~~~eW~~~~~~~~~F~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krD 138 (364)
||+|--+.|...- --..-.+++.++.||+.|++.+.+|= ++... |
T Consensus 1 mfvhLh~hS~YSl------------ldg~~~i~~lv~~A~~~g~~alAlTD---------------~~~m~----G---- 45 (1034)
T PRK07279 1 MFAQLDTKTVYSF------------MDSLIDLEKYVERAKELGYQTIGIMD---------------KDNLY----G---- 45 (1034)
T ss_pred CeeeeecCCCCcc------------ccccCCHHHHHHHHHHCCCCEEEEEc---------------CCccc----c----
Confidence 6888888764321 11225689999999999999999863 32221 1
Q ss_pred hHHHHHHHHHHcCCeeEE
Q 047217 139 VVAELALAAKEAGVDLGL 156 (364)
Q Consensus 139 lV~El~~A~rk~Glk~Gl 156 (364)
+-||.++|+++|||..+
T Consensus 46 -a~~F~~~a~~~gIkPIi 62 (1034)
T PRK07279 46 -AYHFIEGAQKNGLQPIL 62 (1034)
T ss_pred -HHHHHHHHHHcCCcEEE
Confidence 45999999999999876
No 87
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=60.04 E-value=22 Score=31.81 Aligned_cols=45 Identities=27% Similarity=0.426 Sum_probs=31.8
Q ss_pred HHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 93 WVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 93 Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
|.+ +|++|.+++++=+-. | +.| .. +-..+-.+.||+.||++|+|+
T Consensus 17 ~~~-vk~~gi~fviiKate--G--------~~~-------~D---~~~~~~~~~a~~~Gl~vG~Yh 61 (191)
T cd06413 17 WAR-VRAQGVSFAYIKATE--G--------GDH-------VD---KRFAENWRGARAAGLPRGAYH 61 (191)
T ss_pred HHH-HHhCCCcEEEEEEcC--C--------CCc-------cC---HHHHHHHHHHHHcCCceEEEE
Confidence 544 488999999998742 2 111 11 225577889999999999995
No 88
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=59.85 E-value=51 Score=32.44 Aligned_cols=101 Identities=10% Similarity=0.080 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC---CC
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRH---EP 166 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~---~~ 166 (364)
..+.++.+++.|.-.-++..- .+ |-+...+|+.+..-|. |+ ++|++..++.|+|+.++..+.--. .+
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD--~~---~~~~~~~f~~d~~~FP----dp-~~mi~~L~~~G~k~~~~~~P~v~~~~~~~ 95 (339)
T cd06603 26 VKEVDAGFDEHDIPYDVIWLD--IE---HTDGKRYFTWDKKKFP----DP-EKMQEKLASKGRKLVTIVDPHIKRDDGYY 95 (339)
T ss_pred HHHHHHHHHHcCCCceEEEEC--hH---HhCCCCceEeCcccCC----CH-HHHHHHHHHCCCEEEEEecCceecCCCCH
Confidence 577888888888877766443 11 1122334444332232 43 689999999999999988752110 11
Q ss_pred CC------------------------CC-------chhhHHHHHHHHHHHHHccC-ccceeeecCC
Q 047217 167 SY------------------------GK-------TLEYNEFYMAQMAELLTRYG-EIKEVWLDGA 200 (364)
Q Consensus 167 ~y------------------------~~-------~~~y~~~~~~Ql~EL~~~Yg-~i~~~WfDg~ 200 (364)
.| +. .++-.+.+..++++++..++ .++.+|.|..
T Consensus 96 ~y~e~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~ 161 (339)
T cd06603 96 VYKEAKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMN 161 (339)
T ss_pred HHHHHHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccC
Confidence 11 00 12445778899999987653 4689999975
No 89
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=59.74 E-value=57 Score=32.07 Aligned_cols=90 Identities=22% Similarity=0.294 Sum_probs=51.1
Q ss_pred HHHHHHHHcCCeeEEEeCCCCC--CC-------------------CCC-CC------chhhHHHHHHHHHHHHHccCccc
Q 047217 142 ELALAAKEAGVDLGLYLSPWDR--HE-------------------PSY-GK------TLEYNEFYMAQMAELLTRYGEIK 193 (364)
Q Consensus 142 El~~A~rk~Glk~GlYyS~~dw--~~-------------------~~y-~~------~~~y~~~~~~Ql~EL~~~Yg~i~ 193 (364)
+-+++.|+.|-++-.|+|.-.+ +. +.| +. ++++.+++.+++..|+++ | .+
T Consensus 85 ~~i~~Lk~~g~~viaYlSvGe~E~~R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~rl~~l~~k-G-fD 162 (315)
T TIGR01370 85 EEIVRAAAAGRWPIAYLSIGAAEDYRFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSYLDRVIAQ-G-FD 162 (315)
T ss_pred HHHHHHHhCCcEEEEEEEchhccccchhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHHHHHHHHc-C-CC
Confidence 4455688899999999996211 11 112 11 235677788887777654 5 48
Q ss_pred eeeecCCCCC------CC--cchh----hhHHHHHHHHHhhCCCeEEecCCC
Q 047217 194 EVWLDGAKGE------GE--KDME----YFFDSWFSLIHQLQPRAVIFSDVG 233 (364)
Q Consensus 194 ~~WfDg~~~~------~~--~~~~----~~~~~~~~~i~~~qP~~vi~~~~g 233 (364)
++.+|.--.- .. +... -...++.+.+|+..|+.+|.-+.|
T Consensus 163 GvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG 214 (315)
T TIGR01370 163 GVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNG 214 (315)
T ss_pred eEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCc
Confidence 8888853110 00 0000 112333445588899998864333
No 90
>PLN02877 alpha-amylase/limit dextrinase
Probab=59.38 E-value=51 Score=37.32 Aligned_cols=86 Identities=13% Similarity=0.214 Sum_probs=56.9
Q ss_pred HHHHHHHHHHcCCeeEE---EeCCC-----------CCCCCCC-------C--------Cc-----hhhHHHHHHHHHHH
Q 047217 140 VAELALAAKEAGVDLGL---YLSPW-----------DRHEPSY-------G--------KT-----LEYNEFYMAQMAEL 185 (364)
Q Consensus 140 V~El~~A~rk~Glk~Gl---YyS~~-----------dw~~~~y-------~--------~~-----~~y~~~~~~Ql~EL 185 (364)
+++|+++|+++||++.+ |-|.. +...|.| + ++ ....+++..-++-.
T Consensus 468 fk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~yW 547 (970)
T PLN02877 468 FRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLLNW 547 (970)
T ss_pred HHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHHHH
Confidence 79999999999999986 43331 1112221 1 00 13347788888999
Q ss_pred HHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhC--------CCeEEec
Q 047217 186 LTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQ--------PRAVIFS 230 (364)
Q Consensus 186 ~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~q--------P~~vi~~ 230 (364)
++.|+ ||++-||-....+.. .+.++.+.++++. |++++++
T Consensus 548 ~~ey~-VDGFRFDlmg~i~~~----tm~~~~~~L~~i~~~~~~~dg~~i~lyG 595 (970)
T PLN02877 548 AVNYK-VDGFRFDLMGHLMKR----TMVRAKDALQSLTLERDGVDGSSIYLYG 595 (970)
T ss_pred HHHhC-CCEEEEEccccccHH----HHHHHHHHHHHHhhhhcccCCCceEEEE
Confidence 99998 699999966544321 3456677777774 6677764
No 91
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=59.36 E-value=23 Score=37.47 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecC-----CcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHD-----GFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHd-----GF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
-.+.++-++++|++.|.|+.-+.. ||. +.+|-.....| |. .+=+++|+++|+++|||+.+
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~-----~~d~~~id~~~-Gt-~~d~~~lv~~~h~~gi~vil 99 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYD-----VANYTAIDPTY-GT-LDDFDELVAQAKSRGIRIIL 99 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCCCCCCCCCC-----cccCCCcCccc-CC-HHHHHHHHHHHHHCCCEEEE
Confidence 446678999999999999876421 221 24442222233 33 35589999999999999987
No 92
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=58.65 E-value=11 Score=35.51 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLY 157 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlY 157 (364)
..+++++++..||+.+++.+-|. |+. .+....+ .. -.+-++++++-++++||++++=
T Consensus 92 ~~~~i~~a~~lGa~~i~~~~~~~-~~~--~~~~~~~--~~------~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 92 IKLAMDMAKEMNAGYTLISAAHA-GYL--TPPNVIW--GR------LAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCC-CCC--CCHHHHH--HH------HHHHHHHHHHHHHHcCCEEEEe
Confidence 44678999999999998855432 221 1100001 11 1467999999999999999764
No 93
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=58.01 E-value=1.9e+02 Score=28.31 Aligned_cols=63 Identities=17% Similarity=0.187 Sum_probs=39.1
Q ss_pred ChHHHHHHHHHHc-CCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCc----cceeeecCC
Q 047217 138 DVVAELALAAKEA-GVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGE----IKEVWLDGA 200 (364)
Q Consensus 138 DlV~El~~A~rk~-Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~----i~~~WfDg~ 200 (364)
|++.+++++.-+. |..+..++-.|-...+.+-....|.+|+.+-++++++.+.. .-++..+|.
T Consensus 155 d~~i~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piilH~cG~ 222 (321)
T cd03309 155 DAKLKLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVHHSCGA 222 (321)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEEEeCCC
Confidence 4455666665556 88876665444333344555568999999888888876632 134555653
No 94
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=57.83 E-value=24 Score=31.13 Aligned_cols=101 Identities=20% Similarity=0.262 Sum_probs=53.4
Q ss_pred HHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhh
Q 047217 95 HAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEY 174 (364)
Q Consensus 95 ~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y 174 (364)
+.+|++|.+++++-+-.- +.| + .+ -...-.++|++.||++|+|+-..--.. .+...-
T Consensus 13 ~~~k~~gi~fviikateG----------~~~-~------D~---~~~~n~~~a~~aGl~~G~Yhf~~~~~~---~~a~~q 69 (181)
T PF01183_consen 13 QKVKAAGIDFVIIKATEG----------TSY-V------DP---YFESNIKNAKAAGLPVGAYHFARATNS---SDAEAQ 69 (181)
T ss_dssp HHHHHTTEEEEEEEEEET----------TTE-E-------T---THHHHHHHHHHTTSEEEEEEE--TTTH---CHHHHH
T ss_pred HHHHHCCCCEEEEEeeeC----------CCe-e------cc---hHHHHHHHHHHcCCeEEEEEEeccCCc---ccHHHH
Confidence 345999999999998532 111 1 11 255778899999999999986421100 001133
Q ss_pred HHHHHHHHHHHHHccCccceeeecCCCC---CCCc-chhhhHHHHHHHHHh
Q 047217 175 NEFYMAQMAELLTRYGEIKEVWLDGAKG---EGEK-DMEYFFDSWFSLIHQ 221 (364)
Q Consensus 175 ~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~---~~~~-~~~~~~~~~~~~i~~ 221 (364)
.+++..+++ ..+..-..+|+|-... .... ...-...++.+.+++
T Consensus 70 A~~f~~~~~---~~~~~~~~~~lD~E~~~~~~~~~~~~~~~~~~f~~~~~~ 117 (181)
T PF01183_consen 70 ADYFLNQVK---GGDPGDLPPALDVEDDKSNNPSKSDNTAWVKAFLDEVEK 117 (181)
T ss_dssp HHHHHHCTH---TSSTSCS-EEEEE-S-GGCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---ccCCCcceEEEeccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 455656555 2222213469997522 1111 111235566677755
No 95
>PRK10658 putative alpha-glucosidase; Provisional
Probab=57.69 E-value=49 Score=35.95 Aligned_cols=123 Identities=16% Similarity=0.270 Sum_probs=68.0
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE-----
Q 047217 82 VFNPTRL-NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLG----- 155 (364)
Q Consensus 82 ~F~p~~f-D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G----- 155 (364)
.|++++| ||++.++.+++.|.|-++.+- |. |. ... ++.++++++|.-+-
T Consensus 318 ~wd~~~FPdp~~mi~~L~~~G~k~~~~i~---------P~------i~------~~s----~~f~e~~~~gy~vk~~~G~ 372 (665)
T PRK10658 318 EWDPRTFPDPEGMLKRLKAKGLKICVWIN---------PY------IA------QKS----PLFKEGKEKGYLLKRPDGS 372 (665)
T ss_pred EEChhhCCCHHHHHHHHHHCCCEEEEecc---------CC------cC------CCc----hHHHHHHHCCeEEECCCCC
Confidence 4678888 999999999999999766542 11 10 011 23444555553220
Q ss_pred EEeCCCCCCC----CCCCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCc-------c--h---hh---hHHHHH
Q 047217 156 LYLSPWDRHE----PSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEK-------D--M---EY---FFDSWF 216 (364)
Q Consensus 156 lYyS~~dw~~----~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~-------~--~---~~---~~~~~~ 216 (364)
.|. ...|.. +++.+ ++-.+.+..++++|++ +| |+.+|.|.+-..+.. . + .| .-...+
T Consensus 373 ~~~-~~~W~g~~~~~Dftn-p~ar~W~~~~~~~l~d-~G-vdgfw~D~gE~~p~d~~~~~G~~~~~~hN~Y~~l~~ka~~ 448 (665)
T PRK10658 373 VWQ-WDKWQPGMAIVDFTN-PDACKWYADKLKGLLD-MG-VDCFKTDFGERIPTDVVWFDGSDPQKMHNYYTYLYNKTVF 448 (665)
T ss_pred Eee-eeecCCCceeecCCC-HHHHHHHHHHHHHHHh-cC-CcEEEecCCceeeccceecCCCcHHHhcchhHHHHHHHHH
Confidence 110 001211 12222 3456788899999875 67 699999965321100 0 0 01 124456
Q ss_pred HHHHhhCC--CeEEecCCC
Q 047217 217 SLIHQLQP--RAVIFSDVG 233 (364)
Q Consensus 217 ~~i~~~qP--~~vi~~~~g 233 (364)
+.+++..| ..+|+.|.+
T Consensus 449 e~l~~~~~~~r~~i~tRs~ 467 (665)
T PRK10658 449 DVLKETRGEGEAVLFARSA 467 (665)
T ss_pred HHHHHhcCCCceEEEEecc
Confidence 77777665 356667754
No 96
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=57.30 E-value=29 Score=36.67 Aligned_cols=136 Identities=19% Similarity=0.239 Sum_probs=73.2
Q ss_pred CCCHHHHH---HHHHHcCCCEEEEeeeecCCcc---cCC-CCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 047217 87 RLNASQWV---HAAKSAGFNRVILTAKHHDGFC---LWP-SEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 87 ~fD~~~Wa---~l~k~aGakYvvlTaKHHdGF~---lW~-S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS 159 (364)
+|++|... +.+|+-|..-+||- ||+- .=| +...||=|...-|.+ =+.++++|.+++|++|||.+-
T Consensus 305 d~t~e~ile~vk~akk~gvE~FvlD----DGwfg~rndd~~slGDWlv~seKfPs----giE~li~~I~e~Gl~fGIWle 376 (687)
T COG3345 305 DFTEEEILENVKEAKKFGVELFVLD----DGWFGGRNDDLKSLGDWLVNSEKFPS----GIEELIEAIAENGLIFGIWLE 376 (687)
T ss_pred cCCHHHHHHHHHHHhhcCeEEEEEc----cccccccCcchhhhhceecchhhccc----cHHHHHHHHHHcCCccceeec
Confidence 46677654 55566676666663 5643 001 334566443322211 288999999999999999985
Q ss_pred CC--------CCCCCCC------------CC-------chhhHHHHHHHHHHHHHccCccceeeecCCCCC---------
Q 047217 160 PW--------DRHEPSY------------GK-------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGE--------- 203 (364)
Q Consensus 160 ~~--------dw~~~~y------------~~-------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~--------- 203 (364)
+. -+.||+| ++ .+.|.+++...+-+|+ .|.+|+.+=+|++..-
T Consensus 377 Pemvs~dSdlfrqHPDWvvk~~G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll-~~~~v~ylkwdmnr~l~klg~~~~~ 455 (687)
T COG3345 377 PEMVSEDSDLFRQHPDWVVKVNGYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLL-LFHLVSYLKWDMNRELFKLGFLFWG 455 (687)
T ss_pred chhcccchHHHhhCCCeEEecCCccccccccchhhhccChHHHHHhhhHHHHHH-HhhhHHHHHHHhCcceeecCCCCCc
Confidence 41 1234433 11 2355555444443333 3445555544443211
Q ss_pred CCcchhhhHHHHHHHHHhhCCCeEEecC
Q 047217 204 GEKDMEYFFDSWFSLIHQLQPRAVIFSD 231 (364)
Q Consensus 204 ~~~~~~~~~~~~~~~i~~~qP~~vi~~~ 231 (364)
....+.|.+=++++.+....|++.+-+.
T Consensus 456 ~l~qqry~ly~l~~~l~~k~~~i~FeSc 483 (687)
T COG3345 456 ALPQQRYQLYRLFDQLNLKFPHILFESC 483 (687)
T ss_pred cccchHHHHHHHHHHhhhcCCCchhhhh
Confidence 1122344455566666667788776544
No 97
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=56.92 E-value=22 Score=36.70 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeeec--CC---cccCCCCCCCC-------ccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHH--DG---FCLWPSEYTDY-------SVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHH--dG---F~lW~S~~t~~-------~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
..+-++-++++|+..|-|+--+. .| .=.|++.+-+. .|+ +-| |. .+=+++|++||+++|||+.+
T Consensus 24 I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id-~~f-Gt-~~dl~~Li~~~H~~Gi~vi~ 99 (479)
T PRK09441 24 LAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVR-TKY-GT-KEELLNAIDALHENGIKVYA 99 (479)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcC-cCc-CC-HHHHHHHHHHHHHCCCEEEE
Confidence 56778999999999998886543 22 11233333221 122 222 33 56699999999999999876
No 98
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=56.56 E-value=24 Score=31.42 Aligned_cols=45 Identities=18% Similarity=0.104 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE-eCC
Q 047217 92 QWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLY-LSP 160 (364)
Q Consensus 92 ~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlY-yS~ 160 (364)
.+++.+.++||.++++-.. .+ .+-+.++.++||++|+++++= .++
T Consensus 68 ~~~~~~~~aGad~i~~h~~-----------------------~~-~~~~~~~i~~~~~~g~~~~v~~~~~ 113 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGA-----------------------AP-LSTIKKAVKAAKKYGKEVQVDLIGV 113 (202)
T ss_pred HHHHHHHhcCCCEEEEEee-----------------------CC-HHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 4579999999999887532 00 134678999999999999985 544
No 99
>PRK05898 dnaE DNA polymerase III DnaE; Validated
Probab=54.80 E-value=35 Score=38.59 Aligned_cols=62 Identities=16% Similarity=0.114 Sum_probs=45.1
Q ss_pred EEEEeCCCcCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCC
Q 047217 59 LFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGD 138 (364)
Q Consensus 59 iFiHwG~~s~~~~eW~~~~~~~~~F~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krD 138 (364)
||+|--+.|...- --..-.+++.|+.|++.|+..+.+| |++... |
T Consensus 1 mfvhLh~hS~YSl------------Ldg~~~~~~lv~~A~e~g~~alALT---------------D~~nl~----G---- 45 (971)
T PRK05898 1 MFINLNTHSHYSL------------LSSTLSIDDIIKFALDNNQPYVCLT---------------DLNNLY----G---- 45 (971)
T ss_pred CeeeeecCCcccc------------ccccCCHHHHHHHHHHCCCCEEEEE---------------eCCccc----c----
Confidence 6888877663321 1122568999999999999999986 333221 2
Q ss_pred hHHHHHHHHHHcCCeeEE
Q 047217 139 VVAELALAAKEAGVDLGL 156 (364)
Q Consensus 139 lV~El~~A~rk~Glk~Gl 156 (364)
+-||.++|+++|||..+
T Consensus 46 -aveF~~~ak~~gIkPIi 62 (971)
T PRK05898 46 -CIEFYDKAKAHNLIPII 62 (971)
T ss_pred -HHHHHHHHHHcCCCEEE
Confidence 55999999999999876
No 100
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=54.53 E-value=40 Score=35.82 Aligned_cols=146 Identities=14% Similarity=0.216 Sum_probs=80.1
Q ss_pred CCCCC--CCCHHHHHHHHHHcCCCEEEEe---eeecCCcccCCCCC-CCC-ccccCCCCCCCCChHHHHHHHHHHcCCee
Q 047217 82 VFNPT--RLNASQWVHAAKSAGFNRVILT---AKHHDGFCLWPSEY-TDY-SVKSSEWKNGTGDVVAELALAAKEAGVDL 154 (364)
Q Consensus 82 ~F~p~--~fD~~~Wa~l~k~aGakYvvlT---aKHHdGF~lW~S~~-t~~-~v~~~p~~g~krDlV~El~~A~rk~Glk~ 154 (364)
.|.++ .=+.++=++.+++-....+-|- =+||.=++-=++.. +.| ++.+.+ --.+.|+++++++++.||+.
T Consensus 110 ~f~~~~~~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~---i~~~~Vk~yI~~ah~~Gmka 186 (559)
T PF13199_consen 110 DFDKSKSAEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQ---ISTSTVKDYINAAHKYGMKA 186 (559)
T ss_dssp --GGGGGHHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--E---EEHHHHHHHHHHHHHTT-EE
T ss_pred CCCCcCCchhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCE---ehHHHHHHHHHHHHHcCcce
Confidence 45444 2445666777777777776663 45664333211000 122 222211 12588999999999999999
Q ss_pred EEEeCCC-------------CCC------CCC-----CC------------CchhhHHHHHHHHHHHHHccCccceeeec
Q 047217 155 GLYLSPW-------------DRH------EPS-----YG------------KTLEYNEFYMAQMAELLTRYGEIKEVWLD 198 (364)
Q Consensus 155 GlYyS~~-------------dw~------~~~-----y~------------~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfD 198 (364)
..|-... +|. +.. ++ ..+.+++|+.+|+.+.+.++|= |++-.|
T Consensus 187 m~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gF-DG~hlD 265 (559)
T PF13199_consen 187 MAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNKAIQNFGF-DGWHLD 265 (559)
T ss_dssp EEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT---EEEEE
T ss_pred ehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHHHHHccCC-ceEeee
Confidence 9998542 120 000 00 0137889999999999999995 899999
Q ss_pred CCCCCCC-------c--chhhhHHHHHHHHHhhCCCe-EEecC
Q 047217 199 GAKGEGE-------K--DMEYFFDSWFSLIHQLQPRA-VIFSD 231 (364)
Q Consensus 199 g~~~~~~-------~--~~~~~~~~~~~~i~~~qP~~-vi~~~ 231 (364)
-...... + ...-.+..+++.+++..|+. +|+|.
T Consensus 266 q~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~lv~N~ 308 (559)
T PF13199_consen 266 QLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKYLVFNA 308 (559)
T ss_dssp -S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSEEEEB-
T ss_pred ccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCceeeec
Confidence 5432210 0 01224677788888888875 55554
No 101
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=54.53 E-value=37 Score=33.09 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHc--CCeeEEE
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEA--GVDLGLY 157 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~--Glk~GlY 157 (364)
+.+-|+.+++.|.|++|||+-++|.+. + ...+-+.++.+++++. ++++.+.
T Consensus 96 i~~~a~~~~~~GlkevvLTsv~~ddl~-------d----------~g~~~l~~li~~I~~~~p~i~Ievl 148 (302)
T TIGR00510 96 PAKLAETIKDMGLKYVVITSVDRDDLE-------D----------GGASHLAECIEAIREKLPNIKIETL 148 (302)
T ss_pred HHHHHHHHHHCCCCEEEEEeecCCCcc-------c----------ccHHHHHHHHHHHHhcCCCCEEEEe
Confidence 455667778889999999999987321 1 1135578888888885 5666654
No 102
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=54.19 E-value=31 Score=38.52 Aligned_cols=75 Identities=19% Similarity=0.148 Sum_probs=49.0
Q ss_pred CCCCC--CCCHHHHHHHHHHcCCCEEEEeeeecC-CcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 82 VFNPT--RLNASQWVHAAKSAGFNRVILTAKHHD-GFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 82 ~F~p~--~fD~~~Wa~l~k~aGakYvvlTaKHHd-GF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
+|++. .=+..+.+.-+++.|...+-++--+.. .-..+.=.+.+|...+..+ |+ .|=+++|+++|+++||++.+=.
T Consensus 12 Q~~~~~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~l-Gt-~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 12 QFHAGFTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPEL-GG-EEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred eeCCCCCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCC-CC-HHHHHHHHHHHHHCCCEEEEEe
Confidence 45553 123667778889999999988875421 1122222335664444333 33 5779999999999999998844
No 103
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=54.14 E-value=35 Score=30.09 Aligned_cols=100 Identities=21% Similarity=0.311 Sum_probs=56.0
Q ss_pred HHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCch
Q 047217 93 WVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTL 172 (364)
Q Consensus 93 Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~ 172 (364)
|. .+|+.|.++|++=+-.- +.| + -.....-.++||+.||++|+|+=..- . ....
T Consensus 14 ~~-~~~~~g~~fviik~t~G----------~~~-~---------D~~~~~~~~~a~~aGl~~G~Yhy~~~-~----~~a~ 67 (186)
T cd00599 14 WN-AVKAAGIDFVFIKATEG----------TTY-V---------DPKFATNRARARAAGLLVGAYHFARP-C----ANAE 67 (186)
T ss_pred HH-HHHhCCCcEEEEEEeCC----------CCc-c---------ChHHHHHHHHHHHCCCceEEEEEecC-C----CCHH
Confidence 54 45678999999988431 111 1 13356788999999999999985321 0 1111
Q ss_pred hhHHHHHHHHHHHHHccCccceeeecCCCCCCC---cchhhhHHHHHHHHHhh
Q 047217 173 EYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGE---KDMEYFFDSWFSLIHQL 222 (364)
Q Consensus 173 ~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~---~~~~~~~~~~~~~i~~~ 222 (364)
.-.+++... +.+|.+-..+|+|-...... ....-...++.+.+++.
T Consensus 68 ~qa~~fi~~----~~~~~~~~~~~lDvE~~~~~~~~~~~~~~~~~f~~~~~~~ 116 (186)
T cd00599 68 AQADNFVNT----VPRDPGSLPLVLDVEDTGGGCSAAALAAWLNAFLNEVEAL 116 (186)
T ss_pred HHHHHHHHH----ccCcCCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 222333333 33444446788986433221 11122345666777665
No 104
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=54.11 E-value=44 Score=32.19 Aligned_cols=63 Identities=22% Similarity=0.389 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
+..++++.|++.|..|+++ -+|...|-.+ ..+++.. + .+ ..=|.||++=+|++|+++-|+++.
T Consensus 33 ~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~-~~~d~~~-~--~~-~~dl~elv~Ya~~KgVgi~lw~~~ 95 (273)
T PF10566_consen 33 TQKRYIDFAAEMGIEYVLV----DAGWYGWEKD-DDFDFTK-P--IP-DFDLPELVDYAKEKGVGIWLWYHS 95 (273)
T ss_dssp HHHHHHHHHHHTT-SEEEE----BTTCCGS--T-TT--TT--B---T-T--HHHHHHHHHHTT-EEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEe----cccccccccc-ccccccc-c--CC-ccCHHHHHHHHHHcCCCEEEEEeC
Confidence 4678999999999999999 6676643211 2222222 1 12 355999999999999999999974
No 105
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=53.50 E-value=24 Score=29.10 Aligned_cols=39 Identities=31% Similarity=0.333 Sum_probs=28.2
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLG 155 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G 155 (364)
..++++.+.+.|+|.+++.+- ..-.|+.++||++||++-
T Consensus 68 ~~~~v~~~~~~g~~~v~~~~g---------------------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 68 VPEIVDEAAALGVKAVWLQPG---------------------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHT-SEEEE-TT---------------------------S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHcCCCEEEEEcc---------------------------hHHHHHHHHHHHcCCEEE
Confidence 567888888899999999876 223599999999999863
No 106
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=53.30 E-value=70 Score=32.48 Aligned_cols=97 Identities=16% Similarity=0.211 Sum_probs=61.5
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCC-ccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC-----C
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDY-SVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD-----R 163 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~-~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d-----w 163 (364)
.-+|++++.+.|+++-|--+. +.--|+....-+ +++ .+++.-| ++++-+ +--+-+++..+ |
T Consensus 103 vgela~Avr~qGL~FGvy~s~---a~h~W~~~~g~~~~~d---~~dp~y~----~~~~~~---~~~~~~~~~~~~~d~~~ 169 (430)
T COG3669 103 VGELAKAVREQGLRFGVYLSG---AWHPWDFHSGYYADSD---EKDPNYY----LAQLQE---LLSGANYGNAGPFDEVW 169 (430)
T ss_pred HHHHHHHHHHcCCeeeEeecc---CcccccccCCcccccc---ccCcccc----cccHHH---HhcccccccCCCCcchh
Confidence 568999999999999997642 355577666544 222 2344444 222222 22344444322 1
Q ss_pred CCCCCCCchhhHHHHHHHHHHHHHccCccceeeecCC
Q 047217 164 HEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGA 200 (364)
Q Consensus 164 ~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~ 200 (364)
-+..+.+.+++..+.++..-|++.+|-| +.+-||-.
T Consensus 170 ~dnaw~~~~~~~~~wl~r~~e~i~~y~P-~~vyFd~w 205 (430)
T COG3669 170 LDNAWGNGPAKVNYWLARWFELIRRYQP-DLVYFDWW 205 (430)
T ss_pred hcccccCChHHHHHHHHHHHHHHHhhCC-CeEEecch
Confidence 1222334457888999999999999999 89999964
No 107
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=53.29 E-value=22 Score=25.65 Aligned_cols=22 Identities=14% Similarity=0.128 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCCEEEEeeeec
Q 047217 91 SQWVHAAKSAGFNRVILTAKHH 112 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHH 112 (364)
++.++.|.+.||+|..+|+-+-
T Consensus 22 ~~la~kAd~~GA~~y~I~~~~~ 43 (56)
T PF07338_consen 22 EALAKKADEKGAKYYRITSASE 43 (56)
T ss_dssp HHHHHHHHHTT-SEEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEEEc
Confidence 5788999999999999999876
No 108
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=53.01 E-value=1.3e+02 Score=33.42 Aligned_cols=136 Identities=15% Similarity=0.291 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC-CCCC-
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRH-EPSY- 168 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~-~~~y- 168 (364)
++-.+.++....+-+=+.+-|-|=. .|..+...|+.+..-|..|+ .|++..++.|||+.++.-+.--. ++.|
T Consensus 280 ~~v~~~i~~~~~~~IP~d~~~lD~~-~~~~~~~~F~wd~~~FP~pk-----~mi~~l~~~Gikl~~~i~P~i~~d~~~~~ 353 (772)
T COG1501 280 DEVLEFIDEMRERDIPLDVFVLDID-FWMDNWGDFTWDPDRFPDPK-----QMIAELHEKGIKLIVIINPYIKQDSPLFK 353 (772)
T ss_pred HHHHHHHhhcccccCcceEEEEeeh-hhhccccceEECcccCCCHH-----HHHHHHHhcCceEEEEeccccccCCchHH
Confidence 4444455555555455555555433 56666665544332233443 89999999999999998652111 1110
Q ss_pred ----------------------CC--------chhhHHHHHHHHHHHHHccCccceeeecCCCCCCC---------c---
Q 047217 169 ----------------------GK--------TLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGE---------K--- 206 (364)
Q Consensus 169 ----------------------~~--------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~---------~--- 206 (364)
.. .++-.+.+..+..+.+...| |+.+|.|++-.... +
T Consensus 354 e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~G-v~g~W~D~nEp~~~~~~~~~~g~~~~~ 432 (772)
T COG1501 354 EAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLG-VDGFWNDMNEPEPFDGDGFGNGIDHEE 432 (772)
T ss_pred HHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcC-ccEEEccCCCCccccccccccccCHHH
Confidence 00 12334455545656555667 69999998633211 0
Q ss_pred -ch---hhhHHHHHHHHHhh--CCCeEEecCCC
Q 047217 207 -DM---EYFFDSWFSLIHQL--QPRAVIFSDVG 233 (364)
Q Consensus 207 -~~---~~~~~~~~~~i~~~--qP~~vi~~~~g 233 (364)
.. .......++.++++ +...++++|.|
T Consensus 433 ~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg 465 (772)
T COG1501 433 MHNLYPLLYAKAVYEALKELGGNERPFILSRSG 465 (772)
T ss_pred HhcchhHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 00 11235567888888 45677888864
No 109
>PRK10426 alpha-glucosidase; Provisional
Probab=52.36 E-value=63 Score=34.89 Aligned_cols=138 Identities=12% Similarity=0.193 Sum_probs=78.9
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCccc--CCCCC-CCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC-CCCC
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCL--WPSEY-TDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW-DRHE 165 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~l--W~S~~-t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~-dw~~ 165 (364)
..+.++.+++.|..-=++...+-+|.-. |.... .+|..+..-|. | .+++++..++.|+|+.++..+. .-..
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FP----d-p~~mi~~L~~~G~k~v~~i~P~v~~~~ 297 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYP----Q-LDSRIKQLNEEGIQFLGYINPYLASDG 297 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCC----C-HHHHHHHHHHCCCEEEEEEcCccCCCC
Confidence 5688999999998888876643222111 00000 11222221121 3 6689999999999999998762 1001
Q ss_pred CCC--------------C-----------------CchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCc--------
Q 047217 166 PSY--------------G-----------------KTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEK-------- 206 (364)
Q Consensus 166 ~~y--------------~-----------------~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~-------- 206 (364)
+.| + ..++-.+.+..++++.+.++| |+.+|.|.+-..+..
T Consensus 298 ~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~G-vdg~w~D~~E~~p~d~~~~~g~~ 376 (635)
T PRK10426 298 DLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLG-CSGWMADFGEYLPTDAYLHNGVS 376 (635)
T ss_pred HHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcC-CCEEeeeCCCCCCCcceeeCCCC
Confidence 100 0 012445778888888777788 799999975321110
Q ss_pred ch----hh---hHHHHHHHHHhhCC--CeEEecCCC
Q 047217 207 DM----EY---FFDSWFSLIHQLQP--RAVIFSDVG 233 (364)
Q Consensus 207 ~~----~~---~~~~~~~~i~~~qP--~~vi~~~~g 233 (364)
.. .| .....++.+++..+ ..++..|.|
T Consensus 377 ~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg 412 (635)
T PRK10426 377 AEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAG 412 (635)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEccc
Confidence 00 01 12334566777666 567777764
No 110
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=52.02 E-value=1.5e+02 Score=27.55 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=39.8
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCC-CCCchhhHHHHHHHHHHHHHccCccceeeec
Q 047217 137 GDVVAELALAAKEAGVDLGLYLSPWDRHEPS-YGKTLEYNEFYMAQMAELLTRYGEIKEVWLD 198 (364)
Q Consensus 137 rDlV~El~~A~rk~Glk~GlYyS~~dw~~~~-y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfD 198 (364)
.+...+...+++++|+|+-+-...+...... -..+.+-.+-+..++..++++|| +|++=+|
T Consensus 50 ~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~v~~yg-lDGiDiD 111 (255)
T cd06542 50 LTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDTVDKYG-LDGVDFD 111 (255)
T ss_pred hHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHhC-CCceEEe
Confidence 3667789999999999999888754432211 11222223444568888999998 4666555
No 111
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=51.96 E-value=71 Score=26.23 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=19.5
Q ss_pred HHHHHHHHHcCCCEEEEeeeec
Q 047217 91 SQWVHAAKSAGFNRVILTAKHH 112 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHH 112 (364)
++.++.+.++||+|..+++-|-
T Consensus 67 ~~La~KAda~GA~yYrIi~~~e 88 (104)
T PRK14864 67 REIQAKANAAGADYYVIVMVDE 88 (104)
T ss_pred HHHHHHHHHcCCCEEEEEEccc
Confidence 5789999999999999999854
No 112
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=51.92 E-value=2.3e+02 Score=27.41 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=67.7
Q ss_pred HHHHHHHcCCCEEEEeeeecCC--cccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCC
Q 047217 93 WVHAAKSAGFNRVILTAKHHDG--FCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGK 170 (364)
Q Consensus 93 Wa~l~k~aGakYvvlTaKHHdG--F~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~ 170 (364)
..+.++++|.+.+++-=-+-++ =..|.... .. ....-+..-+++||++|+++.+.+-.+. ...+..
T Consensus 17 l~~~~~~~g~~~v~lAFi~~~~~~~~~w~g~~---~~-------~~~~~~~~~i~~lk~~G~kViiS~GG~~--g~~~~~ 84 (294)
T cd06543 17 LTTYAAATGVKAFTLAFIVASGGCKPAWGGSY---PL-------DQGGWIKSDIAALRAAGGDVIVSFGGAS--GTPLAT 84 (294)
T ss_pred HHHHHHHcCCCEEEEEEEEcCCCCcccCCCCC---Cc-------ccchhHHHHHHHHHHcCCeEEEEecCCC--CCcccc
Confidence 3377889999999975333222 22332110 00 0012345567799999999999776543 222322
Q ss_pred chhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcch-hhhHHHHHHHHHhhCCCeEEe
Q 047217 171 TLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDM-EYFFDSWFSLIHQLQPRAVIF 229 (364)
Q Consensus 171 ~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~-~~~~~~~~~~i~~~qP~~vi~ 229 (364)
...-.+-+...+.+++++||- +.+=||-..+...... .-.+.+.+..+++-.|+..|.
T Consensus 85 ~~~~~~~~~~a~~~~i~~y~~-dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p~l~vs 143 (294)
T cd06543 85 SCTSADQLAAAYQKVIDAYGL-THLDFDIEGGALTDTAAIDRRAQALALLQKEYPDLKIS 143 (294)
T ss_pred CcccHHHHHHHHHHHHHHhCC-CeEEEeccCCccccchhHHHHHHHHHHHHHHCCCcEEE
Confidence 223344455667889999995 6666664433221110 112334445555555766554
No 113
>PTZ00032 60S ribosomal protein L18; Provisional
Probab=51.34 E-value=29 Score=31.83 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL 154 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~ 154 (364)
-+..++.+++.|.+-|||=- .||- |. --|+.|++++|+.||+|
T Consensus 169 Gk~IAerAl~kGI~kVvFDR---gGy~---------------YH----GRVkALAdaARe~GLkF 211 (211)
T PTZ00032 169 GKLIGRKALSKGISKVRFDR---AHYK---------------YA----GKVEALAEGARAVGLQF 211 (211)
T ss_pred HHHHHHHHHHCCCCEEEEeC---CCCe---------------eh----hHHHHHHHHHHHcCCCC
Confidence 35678899999999998752 1221 22 33999999999999986
No 114
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=51.20 E-value=22 Score=30.76 Aligned_cols=55 Identities=29% Similarity=0.248 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC
Q 047217 85 PTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD 162 (364)
Q Consensus 85 p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d 162 (364)
.+-+|++.+.++++ |+..|+.+.-++.. ..|.++.+.+||++.|++--+|.|.+.
T Consensus 46 ~d~~d~~~~~~al~--~~d~vi~~~~~~~~---------------------~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 46 GDLFDPDSVKAALK--GADAVIHAAGPPPK---------------------DVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp SCTTCHHHHHHHHT--TSSEEEECCHSTTT---------------------HHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred eeehhhhhhhhhhh--hcchhhhhhhhhcc---------------------cccccccccccccccccccceeeeccc
Confidence 34589999999998 89999998843333 148899999999999999999998643
No 115
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=51.12 E-value=1.2e+02 Score=26.61 Aligned_cols=75 Identities=21% Similarity=0.169 Sum_probs=51.6
Q ss_pred CCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccceeee-cCCCCCCCcchhhhHHH
Q 047217 136 TGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWL-DGAKGEGEKDMEYFFDS 214 (364)
Q Consensus 136 krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~Wf-Dg~~~~~~~~~~~~~~~ 214 (364)
.-|++.++.+.|.++|.++.|+=+. ++ ....-...|..+|+.+...=. +|.. ..-+.++
T Consensus 33 g~dl~~~l~~~~~~~~~~ifllG~~-----------~~---~~~~~~~~l~~~yP~l~ivg~~~g~f------~~~~~~~ 92 (172)
T PF03808_consen 33 GSDLFPDLLRRAEQRGKRIFLLGGS-----------EE---VLEKAAANLRRRYPGLRIVGYHHGYF------DEEEEEA 92 (172)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEeCC-----------HH---HHHHHHHHHHHHCCCeEEEEecCCCC------ChhhHHH
Confidence 3699999999999999999988763 11 222223456668877665533 3322 1123477
Q ss_pred HHHHHHhhCCCeEEec
Q 047217 215 WFSLIHQLQPRAVIFS 230 (364)
Q Consensus 215 ~~~~i~~~qP~~vi~~ 230 (364)
+.+.|++.+||+|+.+
T Consensus 93 i~~~I~~~~pdiv~vg 108 (172)
T PF03808_consen 93 IINRINASGPDIVFVG 108 (172)
T ss_pred HHHHHHHcCCCEEEEE
Confidence 8899999999998875
No 116
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=51.06 E-value=20 Score=34.64 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=36.0
Q ss_pred CCCCC---HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcC
Q 047217 85 PTRLN---ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAG 151 (364)
Q Consensus 85 p~~fD---~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~G 151 (364)
|...| |+..|+.++++|-||||+|+---|-.. .++--...+.++|.|+.+
T Consensus 94 P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~-----------------DGGA~hfa~~i~~Ire~~ 146 (306)
T COG0320 94 PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLP-----------------DGGAQHFAECIRAIRELN 146 (306)
T ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEeecccccc-----------------ccchHHHHHHHHHHHhhC
Confidence 66666 667899999999999999987443211 223455677788888876
No 117
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=50.69 E-value=41 Score=30.10 Aligned_cols=49 Identities=24% Similarity=0.368 Sum_probs=33.8
Q ss_pred HHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 047217 93 WVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 93 Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS 159 (364)
|.+ +|++|.++|++=+-.-.. .+ .| .. .-..+-.+.|++.||++|+|+=
T Consensus 15 ~~~-~k~~g~~fviiKateG~~----g~---~~-------~D---~~~~~~~~~A~~aGl~~G~YHf 63 (191)
T cd06414 15 WKK-VKASGVDFAIIRAGYGGY----GE---LQ-------ED---KYFEENIKGAKAAGIPVGVYFY 63 (191)
T ss_pred HHH-HHhCCCCEEEEEEecCCC----cc---cc-------cC---HHHHHHHHHHHHCCCceEEEEE
Confidence 544 577899999998865332 00 01 11 2356788999999999999983
No 118
>PLN02801 beta-amylase
Probab=50.67 E-value=36 Score=35.54 Aligned_cols=53 Identities=11% Similarity=0.015 Sum_probs=38.6
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLG 155 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G 155 (364)
...|+++++-|+.- .|| +.-|=|++..... .. .| -.||..+..||+++||++.
T Consensus 330 ~pIa~m~~rh~~~l-~FT-----ClEM~D~eq~~~~-~s----~P-E~Lv~QV~~aa~~~Gv~va 382 (517)
T PLN02801 330 RPIARMLSRHYGIL-NFT-----CLEMRDTEQPAEA-LS----AP-QELVQQVLSGAWREGIEVA 382 (517)
T ss_pred HHHHHHHHHcCCeE-EEe-----ecccccCCCCccc-CC----CH-HHHHHHHHHHHHHcCCcEe
Confidence 56899999999843 333 4557777654332 22 23 4899999999999999986
No 119
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=50.54 E-value=19 Score=33.69 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
.++.++++++.|+++|++.+ |. .+...++-.. +. --.+-++++++.++++|+++++=-
T Consensus 87 ~~~~i~~a~~lga~~i~~~~----g~--~~~~~~~~~~----~~-~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLV----GK--TPAGFSSEQI----HA-TLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHhCCCEEEECC----CC--CCCCCCHHHH----HH-HHHHHHHHHHHHHHHcCCEEEEEe
Confidence 47888999999999987632 22 1221111000 00 014677899999999999998853
No 120
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=50.53 E-value=18 Score=33.92 Aligned_cols=58 Identities=17% Similarity=0.173 Sum_probs=36.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS 159 (364)
+++++.+++.|++++++. |+..+.+.-+.-.... -.+-+.++++-++++||++++=.+
T Consensus 97 ~~~i~~a~~lG~~~v~~~-----~~~~~~~~~~~~~~~~------~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 97 KKAIRLAQDLGIRTIQLA-----GYDVYYEEKSEETRQR------FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHhCCCEEEEC-----CcccccccccHHHHHH------HHHHHHHHHHHHHHhCCEEEEEec
Confidence 588999999999999863 3322211111000000 024577888888999999997544
No 121
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=50.49 E-value=17 Score=31.61 Aligned_cols=24 Identities=21% Similarity=0.559 Sum_probs=21.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecC
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHD 113 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHd 113 (364)
-.+|.+.+|+.|+||||+.|-+++
T Consensus 73 L~~w~~~l~~~GFkhV~~lT~D~~ 96 (142)
T PF10673_consen 73 LNDWCEELKESGFKHVFYLTSDSE 96 (142)
T ss_pred HHHHHHHHHhcCCcEEEEEecCcc
Confidence 378999999999999999988765
No 122
>TIGR00060 L18_bact ribosomal protein L18, bacterial type. The archaeal and eukaryotic type rpL18 is not detectable under this model.
Probab=49.90 E-value=29 Score=28.92 Aligned_cols=43 Identities=30% Similarity=0.452 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL 154 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~ 154 (364)
-+..++.++++|...+||--. ||- | .--|+.|++++|+.||+|
T Consensus 72 G~~la~ra~~~gi~~vvfDrg---g~~---------------Y----hGrv~A~a~~aRe~Gl~F 114 (114)
T TIGR00060 72 GKLVAERLKEKGIKDVVFDRG---GYK---------------Y----HGRVAALAEAAREAGLNF 114 (114)
T ss_pred HHHHHHHHHHCCCCEEEEeCC---CCc---------------c----hHHHHHHHHHHHHhCCCC
Confidence 456889999999999986432 221 2 234999999999999987
No 123
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=49.69 E-value=30 Score=31.41 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
++..++.+.++||.++.+-+.. + .+-+.++.++||++|+++|+-..+
T Consensus 69 ~~~~~~~~~~~gad~vtvh~e~----------------------g--~~~l~~~i~~~~~~g~~~~v~~~~ 115 (215)
T PRK13813 69 NRLICEAVFEAGAWGIIVHGFT----------------------G--RDSLKAVVEAAAESGGKVFVVVEM 115 (215)
T ss_pred HHHHHHHHHhCCCCEEEEcCcC----------------------C--HHHHHHHHHHHHhcCCeEEEEEeC
Confidence 4556688888999987765441 1 245788999999999999997754
No 124
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=49.25 E-value=26 Score=32.90 Aligned_cols=56 Identities=13% Similarity=0.275 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 84 NPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 84 ~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
+.+.++|.+|++.+.+.|++.+++|.-..||-. .|+..++++++++++ .+-++.|.
T Consensus 140 ~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~----------------~G~d~el~~~l~~~~-----~~pviasG 195 (241)
T PRK14114 140 AEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTL----------------QEHDFSLTRKIAIEA-----EVKVFAAG 195 (241)
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEEeechhhcC----------------CCcCHHHHHHHHHHC-----CCCEEEEC
Confidence 357899999999999999999999999999954 255566666666553 44566663
No 125
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=46.97 E-value=26 Score=33.07 Aligned_cols=57 Identities=18% Similarity=0.257 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
.+.++++++.|++++++. |....+.....-...+ -.+-++++++.++++|+++++=.
T Consensus 97 ~~~i~~a~~lG~~~v~~~-----~~~~~~~~~~~~~~~~------~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 97 EKAIQLARDLGIRTIQLA-----GYDVYYEEHDEETRRR------FREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHhCCCEEEec-----CcccccCcCCHHHHHH------HHHHHHHHHHHHHHcCCEEEEee
Confidence 678899999999999762 2211111111100000 02457899999999999999853
No 126
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=46.71 E-value=98 Score=28.63 Aligned_cols=79 Identities=20% Similarity=0.150 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccceeee-cCCCCCCCcchhhhHHHH
Q 047217 137 GDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWL-DGAKGEGEKDMEYFFDSW 215 (364)
Q Consensus 137 rDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~Wf-Dg~~~~~~~~~~~~~~~~ 215 (364)
.|.+.+.++.++++|+.+.++.+..... .++.-+..++-+.+..+|. +.+-+ |..... ...+..++
T Consensus 114 ~~~~~~~i~~a~~~G~~v~~~~~~~~~~--------~~~~~~l~~~~~~~~~~g~-~~i~l~Dt~G~~----~P~~v~~l 180 (265)
T cd03174 114 LENAEEAIEAAKEAGLEVEGSLEDAFGC--------KTDPEYVLEVAKALEEAGA-DEISLKDTVGLA----TPEEVAEL 180 (265)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeecCC--------CCCHHHHHHHHHHHHHcCC-CEEEechhcCCc----CHHHHHHH
Confidence 4668888999999999999998643320 0111123445555557786 44443 543221 12346777
Q ss_pred HHHHHhhCCCeEE
Q 047217 216 FSLIHQLQPRAVI 228 (364)
Q Consensus 216 ~~~i~~~qP~~vi 228 (364)
++.+++.-|++.+
T Consensus 181 i~~l~~~~~~~~~ 193 (265)
T cd03174 181 VKALREALPDVPL 193 (265)
T ss_pred HHHHHHhCCCCeE
Confidence 8888888776444
No 127
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=46.64 E-value=35 Score=32.63 Aligned_cols=47 Identities=13% Similarity=0.017 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHH
Q 047217 85 PTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAA 147 (364)
Q Consensus 85 p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~ 147 (364)
.+.++|.+|+..+.+.|++.+++|.-.-||-. .|+..++++++++++
T Consensus 160 ~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl----------------~G~d~el~~~l~~~~ 206 (262)
T PLN02446 160 FSDLAVDEETLEFLAAYCDEFLVHGVDVEGKR----------------LGIDEELVALLGEHS 206 (262)
T ss_pred cCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcc----------------cCCCHHHHHHHHhhC
Confidence 47899999999999999999999999999943 256677888887775
No 128
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=46.08 E-value=2.6e+02 Score=27.69 Aligned_cols=172 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCCCCCCChhhhhcccccceEEEEeCCCcCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q 047217 16 LILTLLALYFIPISNSPLKKPPPLPILPLPSSPQLEWQLSSMALFLHFGPNTFTDSEWGTGRADPRVFNPTRLNASQWVH 95 (364)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~q~~w~d~kfGiFiHwG~~s~~~~eW~~~~~~~~~F~p~~fD~~~Wa~ 95 (364)
++|+||.++.+..+ ..=+++.+....|-... ...++=.|. -+-..++.-+|.. -.....| .++| ++.+.
T Consensus 3 ~~~~~~~~~~~~~~---~~c~~~~~~~~~p~~~~---~~~~~~~~~-~~~~~~~~~~~~~-~tti~~~--~~~~-~~~~~ 71 (358)
T cd02875 3 ILLILLILLAISKS---YECPCIEPELCEPIEIG---PRFEFLVFS-VNSTNYPNYDWSK-VTTIAIF--GDID-DELLC 71 (358)
T ss_pred hHHHHHHHHHHHhc---CCCCCCCHhhCCCccCC---CceEEEEEE-eCCCcCccccccc-ceEEEec--CCCC-HHHHH
Q ss_pred HHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC--CCCCCCCCCCchh
Q 047217 96 AAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP--WDRHEPSYGKTLE 173 (364)
Q Consensus 96 l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~--~dw~~~~y~~~~~ 173 (364)
.|++.|.| |++. ..+......-...++-++..+++.++++| |.. .||..|.-....+
T Consensus 72 ~A~~~~v~-v~~~--------------~~~~~~~l~~~~~R~~fi~siv~~~~~~g------fDGIdIDwE~p~~~~~~d 130 (358)
T cd02875 72 YAHSKGVR-LVLK--------------GDVPLEQISNPTYRTQWIQQKVELAKSQF------MDGINIDIEQPITKGSPE 130 (358)
T ss_pred HHHHcCCE-EEEE--------------CccCHHHcCCHHHHHHHHHHHHHHHHHhC------CCeEEEcccCCCCCCcch
Q ss_pred hHHH--HHHHHHHHHHccCccceeeecCCCCCCCcchh-hhHHHHHHHH
Q 047217 174 YNEF--YMAQMAELLTRYGEIKEVWLDGAKGEGEKDME-YFFDSWFSLI 219 (364)
Q Consensus 174 y~~~--~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~-~~~~~~~~~i 219 (364)
+..| ++.++++-+.+-++-..+-++-.......... |++.++-+.+
T Consensus 131 ~~~~t~llkelr~~l~~~~~~~~Lsvav~~~p~~~~~~~yd~~~l~~~v 179 (358)
T cd02875 131 YYALTELVKETTKAFKKENPGYQISFDVAWSPSCIDKRCYDYTGIADAS 179 (358)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEEecCcccccccccCHHHHHhhC
No 129
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=45.61 E-value=53 Score=34.06 Aligned_cols=134 Identities=15% Similarity=0.219 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC-CC----CC
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW-DR----HE 165 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~-dw----~~ 165 (364)
++...+-++.|.+||=+=.==+|+...... ..+-.+ .+| .-..|-.+.|...+.|||+-+=+|.- .. ..
T Consensus 43 ~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~-~~~~~~--~~Y---nf~~lD~i~D~l~~~g~~P~vel~f~p~~~~~~~~ 116 (486)
T PF01229_consen 43 EQLRELQEELGFRYVRFHGLFSDDMMVYSE-SDEDGI--PPY---NFTYLDQILDFLLENGLKPFVELGFMPMALASGYQ 116 (486)
T ss_dssp HHHHHHHCCS--SEEEES-TTSTTTT-EEE-EETTEE--EEE-----HHHHHHHHHHHHCT-EEEEEE-SB-GGGBSS--
T ss_pred HHHHHHHhccCceEEEEEeeccCchhhccc-cccCCC--CcC---ChHHHHHHHHHHHHcCCEEEEEEEechhhhcCCCC
Confidence 467777789999999553333455554322 000000 012 14678899999999999997776620 00 00
Q ss_pred CC--C-------CCchhhHHHHHHHHHHHHHccCc--cc----eeeecCCCCC-C--Ccchhh--hHHHHHHHHHhhCCC
Q 047217 166 PS--Y-------GKTLEYNEFYMAQMAELLTRYGE--IK----EVWLDGAKGE-G--EKDMEY--FFDSWFSLIHQLQPR 225 (364)
Q Consensus 166 ~~--y-------~~~~~y~~~~~~Ql~EL~~~Yg~--i~----~~WfDg~~~~-~--~~~~~~--~~~~~~~~i~~~qP~ 225 (364)
+. + .+...+.+++.+-++-++.|||- +. ++|..-.... . .....| .++..++.||+..|+
T Consensus 117 ~~~~~~~~~~pp~~~~~W~~lv~~~~~h~~~RYG~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~p~ 196 (486)
T PF01229_consen 117 TVFWYKGNISPPKDYEKWRDLVRAFARHYIDRYGIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVDPE 196 (486)
T ss_dssp EETTTTEE-S-BS-HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH-TT
T ss_pred ccccccCCcCCcccHHHHHHHHHHHHHHHHhhcCCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence 00 1 11135667777888888999993 32 5666321110 0 011122 245566789999999
Q ss_pred eEEec
Q 047217 226 AVIFS 230 (364)
Q Consensus 226 ~vi~~ 230 (364)
+.|-+
T Consensus 197 ~~vGG 201 (486)
T PF01229_consen 197 LKVGG 201 (486)
T ss_dssp SEEEE
T ss_pred CcccC
Confidence 98753
No 130
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=45.20 E-value=27 Score=32.58 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=29.9
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCEEEEeeeecCC
Q 047217 82 VFNPTRLNASQWVHAAKSAGFNRVILTAKHHDG 114 (364)
Q Consensus 82 ~F~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdG 114 (364)
.|..+..++.+|++.+++.|++.+++|.-..||
T Consensus 140 gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dG 172 (232)
T PRK13586 140 GWKEKSMEVIDGIKKVNELELLGIIFTYISNEG 172 (232)
T ss_pred CCeeCCCCHHHHHHHHHhcCCCEEEEecccccc
Confidence 344567899999999999999999999999999
No 131
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=44.87 E-value=49 Score=32.81 Aligned_cols=68 Identities=9% Similarity=0.191 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCCCEEEEeeeec---------CCcccCCCCCCCCc---------------------c--ccCCCCCCCCC
Q 047217 91 SQWVHAAKSAGFNRVILTAKHH---------DGFCLWPSEYTDYS---------------------V--KSSEWKNGTGD 138 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHH---------dGF~lW~S~~t~~~---------------------v--~~~p~~g~krD 138 (364)
++.++.++++...-+|+.+-|| +.||+...++-.-+ . ....+. +..+
T Consensus 78 ~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-gd~e 156 (335)
T PRK13363 78 ERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPGVKAAMPGYMPDAETTYP-VVPE 156 (335)
T ss_pred HHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhccccccccccccccccccCCCCCcCCC-CCHH
Confidence 6788889999999999999999 67777766542210 0 011222 3478
Q ss_pred hHHHHHHHHHHcCCeeEEEeC
Q 047217 139 VVAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 139 lV~El~~A~rk~Glk~GlYyS 159 (364)
+..++++.+++.|+.+..-..
T Consensus 157 LA~~I~~~l~~~G~d~~~~~~ 177 (335)
T PRK13363 157 LARHMIRRLVDDGFDITALDR 177 (335)
T ss_pred HHHHHHHHHHHcCCCeeeecc
Confidence 999999999999998885443
No 132
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=44.31 E-value=36 Score=27.40 Aligned_cols=69 Identities=13% Similarity=0.199 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHc
Q 047217 77 RADPRVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEA 150 (364)
Q Consensus 77 ~~~~~~F~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~ 150 (364)
.--|..+..+++-.++.+++++++|-++.|.--|-+=+ .-|.+. -.-+..+ .++|+.+++.+++..++.
T Consensus 21 Rrvpk~laV~~P~~~ei~~a~~~LGl~~~v~~dk~yPr-~~w~~~--g~vive~--~~~K~~~lk~ia~~lr~~ 89 (93)
T COG1400 21 RRVPKELAVENPSLEEIAEALRELGLKPKVERDKKYPR-LWWEIS--GRVIVES--NGKKSKLLKAIAAKLREK 89 (93)
T ss_pred cccchhhcccCCCHHHHHHHHHHcCCCeeechhhcCCC-chhhhC--ceEEEec--CccHhHHHHHHHHHHHHh
Confidence 34577888899999999999999999998665555544 223332 2212222 367899999999988764
No 133
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=44.03 E-value=1.7e+02 Score=27.32 Aligned_cols=100 Identities=19% Similarity=0.161 Sum_probs=54.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCC------------------------CCCccccCCCCC-----------
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEY------------------------TDYSVKSSEWKN----------- 134 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~------------------------t~~~v~~~p~~g----------- 134 (364)
+|+.++.+++.|++--.-+.-.|+...-|-+.. ..|.|.|-|...
T Consensus 18 ~D~~~~~a~~~gi~v~gH~l~W~~~~P~W~~~~~~~~~~~~~~~~i~~v~~ry~g~i~~wdV~NE~~~~~~~~~~~~~w~ 97 (254)
T smart00633 18 ADAIVNFAKENGIKVRGHTLVWHSQTPDWVFNLSKETLLARLENHIKTVVGRYKGKIYAWDVVNEALHDNGSGLRRSVWY 97 (254)
T ss_pred HHHHHHHHHHCCCEEEEEEEeecccCCHhhhcCCHHHHHHHHHHHHHHHHHHhCCcceEEEEeeecccCCCcccccchHH
Confidence 677899999999986444444555555554421 123343333211
Q ss_pred --CCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccce
Q 047217 135 --GTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKE 194 (364)
Q Consensus 135 --~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~ 194 (364)
...|++.+..+++|+.+-..-||+.-+.-..+ ....+.++..+++|.++-.||+.
T Consensus 98 ~~~G~~~i~~af~~ar~~~P~a~l~~Ndy~~~~~-----~~k~~~~~~~v~~l~~~g~~iDg 154 (254)
T smart00633 98 QILGEDYIEKAFRYAREADPDAKLFYNDYNTEEP-----NAKRQAIYELVKKLKAKGVPIDG 154 (254)
T ss_pred HhcChHHHHHHHHHHHHhCCCCEEEEeccCCcCc-----cHHHHHHHHHHHHHHHCCCccce
Confidence 01267777777777777666777752211111 02234556667777776556443
No 134
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=43.91 E-value=27 Score=29.50 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=38.6
Q ss_pred CCcCCCCCCCCCCHHHHHHHHHhhhcCCceeEEccCCCCCCCCCHHHHHH-HHHHHHHHHHHhcc
Q 047217 290 RGWFWHASEAPKSAVELLDLYYKSVGRNCLLLLNVPPNSLGLISAEDIQV-LQEFSELRKSIFSY 353 (364)
Q Consensus 290 ~~W~y~~~~~~ks~~~li~~l~~~Vs~nGnlLLNigP~~dG~Ip~~~~~~-L~eiG~wl~~if~~ 353 (364)
+.|-|-.++.-.=++.||+.=.=+|++-|.+||.|. ..+-..|..+.+. .+.+++||...|+-
T Consensus 37 ~~wvWi~DN~~~~vRALl~~grV~v~~eGRYLl~l~-~~~s~~plr~kE~~ak~vA~~L~~rF~v 100 (132)
T PF14468_consen 37 NAWVWIHDNQSEVVRALLQAGRVKVNKEGRYLLDLD-LFDSDWPLRKKEAMAKHVAGWLRHRFGV 100 (132)
T ss_pred ceEEEEecCcCHHHHHHHHcCceeeccCceeeeecc-cccCCCchHHHHHHHHHHHHHHHHHhCc
Confidence 345554443222233333333335899999999984 3444566666554 46899999888864
No 135
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=43.70 E-value=2.5e+02 Score=26.17 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 047217 85 PTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLY 157 (364)
Q Consensus 85 p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlY 157 (364)
|..++.++-++.++++|.++|=+.... .+. ...... + ...-+.++.++++++||++...
T Consensus 13 ~~~~~~~e~~~~~~~~G~~~iEl~~~~------~~~---~~~~~~--~---~~~~~~~l~~~l~~~Gl~i~~~ 71 (284)
T PRK13210 13 PKHLSWEERLVFAKELGFDFVEMSVDE------SDE---RLARLD--W---SKEERLSLVKAIYETGVRIPSM 71 (284)
T ss_pred CCCCCHHHHHHHHHHcCCCeEEEecCC------ccc---cccccc--C---CHHHHHHHHHHHHHcCCCceEE
Confidence 566899999999999999999885321 000 011000 0 1233789999999999998754
No 136
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=43.43 E-value=60 Score=30.99 Aligned_cols=53 Identities=17% Similarity=0.369 Sum_probs=42.4
Q ss_pred CCC-CCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 83 FNP-TRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 83 F~p-~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
+|| -++..|.+++.++++|++.+++.-- |+ +=..++.++|+++||.+.+..++
T Consensus 100 ~N~i~~~G~e~F~~~~~~aGvdgviipDL--------------------P~-----ee~~~~~~~~~~~gi~~I~lv~P 153 (263)
T CHL00200 100 YNPVLHYGINKFIKKISQAGVKGLIIPDL--------------------PY-----EESDYLISVCNLYNIELILLIAP 153 (263)
T ss_pred ccHHHHhCHHHHHHHHHHcCCeEEEecCC--------------------CH-----HHHHHHHHHHHHcCCCEEEEECC
Confidence 344 2567899999999999999987321 21 33779999999999999999997
No 137
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=43.36 E-value=57 Score=31.04 Aligned_cols=53 Identities=30% Similarity=0.520 Sum_probs=43.7
Q ss_pred CCC-CCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 83 FNP-TRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 83 F~p-~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
+|| -++..|.+++.++++|++-+++. | -| -|=..++.++|+++||.+.+..++
T Consensus 98 ~N~i~~~G~e~f~~~~~~aGvdGviip---------------D-----Lp-----~ee~~~~~~~~~~~gl~~I~lvap 151 (258)
T PRK13111 98 YNPIFQYGVERFAADAAEAGVDGLIIP---------------D-----LP-----PEEAEELRAAAKKHGLDLIFLVAP 151 (258)
T ss_pred ccHHhhcCHHHHHHHHHHcCCcEEEEC---------------C-----CC-----HHHHHHHHHHHHHcCCcEEEEeCC
Confidence 355 36789999999999999999985 1 12 256789999999999999998886
No 138
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=43.28 E-value=1.6e+02 Score=30.50 Aligned_cols=76 Identities=14% Similarity=0.039 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHH
Q 047217 137 GDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWF 216 (364)
Q Consensus 137 rDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~ 216 (364)
-|.+--|+..+.+-||.+-.=-+.. . +.+|..-..+.+++++..||+-..+-.|+. ++.++.
T Consensus 323 p~~~i~LarfL~elGmevV~vgt~~-------~-~~~~~~~d~~~l~~~~~~~~~~~~vive~~----------D~~el~ 384 (457)
T CHL00073 323 NLLEISLARFLIRCGMIVYEIGIPY-------M-DKRYQAAELALLEDTCRKMNVPMPRIVEKP----------DNYNQI 384 (457)
T ss_pred CcHHHHHHHHHHHCCCEEEEEEeCC-------C-ChhhhHHHHHHHHHHhhhcCCCCcEEEeCC----------CHHHHH
Confidence 3677777777777777765443321 0 124444455668888888886333334432 246777
Q ss_pred HHHHhhCCCeEEec
Q 047217 217 SLIHQLQPRAVIFS 230 (364)
Q Consensus 217 ~~i~~~qP~~vi~~ 230 (364)
+.+++.+||.+|.+
T Consensus 385 ~~i~~~~pDLlIgG 398 (457)
T CHL00073 385 QRIRELQPDLAITG 398 (457)
T ss_pred HHHhhCCCCEEEcc
Confidence 88999999999853
No 139
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=43.15 E-value=1.5e+02 Score=28.50 Aligned_cols=200 Identities=13% Similarity=0.101 Sum_probs=105.0
Q ss_pred HHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCch
Q 047217 93 WVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTL 172 (364)
Q Consensus 93 Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~ 172 (364)
=++.++++|++.+.+...=.|-++-- +...++ ..--+.++++++.++++|+++.++.+. +..| |..++
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~h~~~-------~~~~t~--~e~l~~~~~~i~~a~~~G~~v~~~~~d--~~~~-~r~~~ 146 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLKHCTE-------QLRKTP--EEHFADIREVIEYAIKNGIEVNIYLED--WSNG-MRDSP 146 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHHHHHH-------HHCcCH--HHHHHHHHHHHHHHHhCCCEEEEEEEe--CCCC-CcCCH
Confidence 37789999999998887433332211 111111 001355788899999999999999883 3222 23333
Q ss_pred hhHHHHHHHHHHHHHccCcccee-eecCCCCCCCcchhhhHHHHHHHHHhhCCCeEEecCCCCCcccccCCCCCCCcccc
Q 047217 173 EYNEFYMAQMAELLTRYGEIKEV-WLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGPDTRWIGDEAGVAGSTCW 251 (364)
Q Consensus 173 ~y~~~~~~Ql~EL~~~Yg~i~~~-WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~~~g~~~~w~g~e~g~~~~~~~ 251 (364)
+++...++++. .+|. +.+ --|...... .....+++..+++.-|+..|--+ .++ ..|.+.-...
T Consensus 147 ---~~~~~~~~~~~-~~G~-~~i~l~DT~G~~~----P~~v~~l~~~l~~~~~~~~i~~H-~Hn------d~Gla~AN~l 210 (280)
T cd07945 147 ---DYVFQLVDFLS-DLPI-KRIMLPDTLGILS----PFETYTYISDMVKRYPNLHFDFH-AHN------DYDLAVANVL 210 (280)
T ss_pred ---HHHHHHHHHHH-HcCC-CEEEecCCCCCCC----HHHHHHHHHHHHhhCCCCeEEEE-eCC------CCCHHHHHHH
Confidence 34544455554 4675 444 446543221 22355666666665565544321 222 2222110000
Q ss_pred ccccCCCCccCCCCCCCCCCCCCCCCCCcccceeeecCCCcCCCCCCCCCCHHHHHHHHHhhhcCCceeEEccCCCCCCC
Q 047217 252 SLFNRSDAKIGGTDPRYSQGGDPHGHDWVPAECDVSIRRGWFWHASEAPKSAVELLDLYYKSVGRNCLLLLNVPPNSLGL 331 (364)
Q Consensus 252 ~~~n~~~~~~g~~~~~~~~~g~~~~~~w~P~e~~~~i~~~W~y~~~~~~ks~~~li~~l~~~Vs~nGnlLLNigP~~dG~ 331 (364)
..+ ..| ..+ .+.++++ ..+....-+.++++..|....+ .
T Consensus 211 aA~-----~aG--------------a~~----vd~s~~G---lGe~aGN~~~E~~v~~L~~~~g---------------~ 249 (280)
T cd07945 211 AAV-----KAG--------------IKG----LHTTVNG---LGERAGNAPLASVIAVLKDKLK---------------V 249 (280)
T ss_pred HHH-----HhC--------------CCE----EEEeccc---ccccccCccHHHHHHHHHHhcC---------------C
Confidence 000 011 111 2222221 0111223467888877743221 1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcccccccccc
Q 047217 332 ISAEDIQVLQEFSELRKSIFSYNLAENALV 361 (364)
Q Consensus 332 Ip~~~~~~L~eiG~wl~~if~~~~~~~~~~ 361 (364)
-...+.+.|.++.++++++.+.++..+.++
T Consensus 250 ~t~idl~~l~~~~~~v~~~~g~~~~~~~pi 279 (280)
T cd07945 250 KTNIDEKRLNRASRLVETFSGKRIPANKPI 279 (280)
T ss_pred CcCcCHHHHHHHHHHHHHHhCcCCCCCCCc
Confidence 122567899999999999999888887765
No 140
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=42.68 E-value=50 Score=33.50 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=37.8
Q ss_pred CCCHHHH-HHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE-EeCC
Q 047217 87 RLNASQW-VHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL-YLSP 160 (364)
Q Consensus 87 ~fD~~~W-a~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl-YyS~ 160 (364)
-.||..+ ++.+.++||.++++-+. ...+-+.+..+++|++|+++|+ =+++
T Consensus 235 ~~Di~~~vv~~~a~aGAD~vTVH~e------------------------a~~~ti~~ai~~akk~GikvgVD~lnp 286 (391)
T PRK13307 235 TLDTGNLEARMAADATADAVVISGL------------------------APISTIEKAIHEAQKTGIYSILDMLNV 286 (391)
T ss_pred ccChhhHHHHHHHhcCCCEEEEecc------------------------CCHHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 3577788 77888888888876432 1134588999999999999999 5554
No 141
>PF11373 DUF3175: Protein of unknown function (DUF3175); InterPro: IPR021513 This entry is represented by Ralstonia phage RSL1, Orf186. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=42.53 E-value=65 Score=25.35 Aligned_cols=42 Identities=24% Similarity=0.426 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHhhhcCCceeEEccCCCCCCCCCHHHHHHHHHHHHHHHHHhcc
Q 047217 298 EAPKSAVELLDLYYKSVGRNCLLLLNVPPNSLGLISAEDIQVLQEFSELRKSIFSY 353 (364)
Q Consensus 298 ~~~ks~~~li~~l~~~Vs~nGnlLLNigP~~dG~Ip~~~~~~L~eiG~wl~~if~~ 353 (364)
.++.|+..++..|+.-.|+| +|..+.++|+...+-|++.||.
T Consensus 45 ~pf~SAMSML~FYINRAGk~--------------L~~~rr~~LE~AK~eLR~~fGr 86 (86)
T PF11373_consen 45 TPFRSAMSMLNFYINRAGKN--------------LPKERRAVLERAKDELRKAFGR 86 (86)
T ss_pred CchHHHHHHHHHHHhccccc--------------CCHHHHHHHHHHHHHHHHHhCC
Confidence 35678889999999888876 7999999999999999999973
No 142
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=42.46 E-value=53 Score=39.39 Aligned_cols=67 Identities=16% Similarity=0.089 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCEEEEeeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHH-DGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHH-dGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
..+.++-+++.|...|.++--.- ..-..+.-.+++|...+..+ |+ .+=+++|+++|+++||++.+=+
T Consensus 760 ~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~l-G~-~edf~~Lv~~ah~~Gi~vilDi 827 (1693)
T PRK14507 760 AEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEI-GG-EEGFERFCAALKAHGLGQLLDI 827 (1693)
T ss_pred HHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCccc-CC-HHHHHHHHHHHHHCCCEEEEEe
Confidence 66777788999999999886543 11122333345554333333 44 4567999999999999998844
No 143
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=42.37 E-value=36 Score=31.99 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=44.2
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 81 RVFNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 81 ~~F~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
..|+.+..++.+|++.+.+.|++.+++|.-..||-.- |+..++++++++.+ +.-+++|.
T Consensus 142 ~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~----------------G~d~~l~~~l~~~~-----~~pviasG 200 (243)
T TIGR01919 142 RGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSG----------------GPNELLLEVVAART-----DAIVAASG 200 (243)
T ss_pred CCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCC----------------CcCHHHHHHHHhhC-----CCCEEEEC
Confidence 3455678999999999999999999999999999542 55455666655543 45566663
No 144
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=42.31 E-value=43 Score=30.75 Aligned_cols=39 Identities=33% Similarity=0.427 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 047217 86 TRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL 154 (364)
Q Consensus 86 ~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~ 154 (364)
+=.|+++ ++.+.++||+|+| ||. +..|++++|+++||.+
T Consensus 66 TVl~~~~-a~~a~~aGA~Fiv-----------------------sP~------~~~~v~~~~~~~~i~~ 104 (204)
T TIGR01182 66 TVLNPEQ-LRQAVDAGAQFIV-----------------------SPG------LTPELAKHAQDHGIPI 104 (204)
T ss_pred eCCCHHH-HHHHHHcCCCEEE-----------------------CCC------CCHHHHHHHHHcCCcE
Confidence 3467777 8889999999995 221 1238999999999853
No 145
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=42.10 E-value=64 Score=35.89 Aligned_cols=66 Identities=20% Similarity=0.113 Sum_probs=44.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeeec-CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHH-DGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLY 157 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHH-dGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlY 157 (364)
..+-++-+++.|...|-++--.. ..-..+.-.+++|...+..+ | ..+=+++|++||+++||++.+=
T Consensus 18 ~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~l-G-t~edf~~Lv~aah~~Gm~vIlD 84 (825)
T TIGR02401 18 AAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPEL-G-GEEGLRRLSEAARARGLGLIVD 84 (825)
T ss_pred HHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCC-C-CHHHHHHHHHHHHHCCCEEEEE
Confidence 56667788999999998876542 11122233335654434333 3 3577999999999999999883
No 146
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=41.80 E-value=37 Score=31.67 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=29.2
Q ss_pred CCCCCCCHHHHHHHHHHcCCCEEEEeeeecCCcc
Q 047217 83 FNPTRLNASQWVHAAKSAGFNRVILTAKHHDGFC 116 (364)
Q Consensus 83 F~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~ 116 (364)
|..+..++.++++.+.++|+..+++|....||-.
T Consensus 141 w~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~ 174 (241)
T PRK14024 141 WTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTL 174 (241)
T ss_pred eeecCccHHHHHHHHHhcCCCEEEEEeecCCCCc
Confidence 3345679999999999999999999999999843
No 147
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=41.71 E-value=1.6e+02 Score=28.05 Aligned_cols=113 Identities=17% Similarity=0.234 Sum_probs=68.6
Q ss_pred CCHHHH---HHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC---C
Q 047217 88 LNASQW---VHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP---W 161 (364)
Q Consensus 88 fD~~~W---a~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~---~ 161 (364)
++.+++ ++++|++|+..|=+ ||- | . + .++.++|-+.||-+-.=... .
T Consensus 33 ~~~~~~~~d~~l~k~~G~N~iR~---~h~-----------------p----~-~--~~~~~~cD~~GilV~~e~~~~~~~ 85 (298)
T PF02836_consen 33 MPDEAMERDLELMKEMGFNAIRT---HHY-----------------P----P-S--PRFYDLCDELGILVWQEIPLEGHG 85 (298)
T ss_dssp --HHHHHHHHHHHHHTT-SEEEE---TTS------------------------S--HHHHHHHHHHT-EEEEE-S-BSCT
T ss_pred CCHHHHHHHHHHHHhcCcceEEc---ccc-----------------c----C-c--HHHHHHHhhcCCEEEEeccccccC
Confidence 455555 56799999998754 331 1 0 1 38899999999987543221 1
Q ss_pred CCCCC----CCCCchhhHHHHHHHHHHHHHccC--ccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeEEecC
Q 047217 162 DRHEP----SYGKTLEYNEFYMAQMAELLTRYG--EIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSD 231 (364)
Q Consensus 162 dw~~~----~y~~~~~y~~~~~~Ql~EL~~~Yg--~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~~ 231 (364)
-|... ....++.+.+.+..+++|++.++. |--.+|.=| ++. .....+.+++++++++-|...|...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~NHPSIi~W~~g-NE~---~~~~~~~~l~~~~k~~DptRpv~~~ 157 (298)
T PF02836_consen 86 SWQDFGNCNYDADDPEFRENAEQELREMVRRDRNHPSIIMWSLG-NES---DYREFLKELYDLVKKLDPTRPVTYA 157 (298)
T ss_dssp SSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHTT-TTEEEEEEE-ESS---HHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred ccccCCccccCCCCHHHHHHHHHHHHHHHHcCcCcCchheeecC-ccC---ccccchhHHHHHHHhcCCCCceeec
Confidence 12111 123456888899999999998775 433556644 333 2334567889999999999877543
No 148
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=41.66 E-value=26 Score=32.43 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=36.4
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
+++++.+++.|+++|++.+-.+ +-..+.-.... --.|-++++++-+++.||++++=.
T Consensus 87 ~~~i~~a~~lg~~~i~~~~g~~------~~~~~~~~~~~-----~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 87 ALAIAYARALGCPQVNCLAGKR------PAGVSPEEARA-----TLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHhCCCEEEECcCCC------CCCCCHHHHHH-----HHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4789999999999987654211 00000000000 013678999999999999999843
No 149
>cd07367 CarBb CarBb is the B subunit of the Class III Extradiol ring-cleavage dioxygenase, 2-aminophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. CarBb is the B subunit of 2-aminophenol 1,6-dioxygenase (CarB), which catalyzes the oxidization and subsequent ring-opening of 2-aminophenyl-2,3-diol. It is a key enzyme in the carbazole degradation pathway isolated from bacterial strains with carbazole degradation ability. The enzyme is a heterotetramer composed of two A and two B subunits. CarB belongs to the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Although the enzyme was originally isolated as a meta-cleavage enzyme for 2'-aminobiphenyl-2,3-diol involved in carbazole degradation, it has also shown high specificity for 2,3-dihydroxybiphenyl.
Probab=41.50 E-value=64 Score=30.74 Aligned_cols=68 Identities=13% Similarity=0.199 Sum_probs=44.4
Q ss_pred HHHHHHHHHcCCCEEEEeeeec-CC--------cccCCCCC-CC---CccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 047217 91 SQWVHAAKSAGFNRVILTAKHH-DG--------FCLWPSEY-TD---YSVKSSEWKNGTGDVVAELALAAKEAGVDLGLY 157 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHH-dG--------F~lW~S~~-t~---~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlY 157 (364)
+++.+.++++..+-+|+.+-|| .. |++..++. .+ +......+ .+..++..++++.|++.|+.+...
T Consensus 32 ~~~~~~l~~~~Pd~ivvis~dH~~~~~~~~~p~~~i~~~~~~~~~~~~g~p~~~~-~gd~~LA~~i~~~l~~~g~~~~~~ 110 (268)
T cd07367 32 AEIGRRVRESRPDVLVVISSDHLFNINLSLQPPFVVGTADSYTPFGDMDIPRELF-PGHREFARAFVRQAAEDGFDLAQA 110 (268)
T ss_pred HHHHHHHHHcCCCEEEEEeCchhhhcccccCCceEEeeccccccCCcCCCCcccC-CCCHHHHHHHHHHHHHcCCCeeee
Confidence 3456667777889999999987 44 44433332 22 11111112 235799999999999999998876
Q ss_pred eC
Q 047217 158 LS 159 (364)
Q Consensus 158 yS 159 (364)
..
T Consensus 111 ~~ 112 (268)
T cd07367 111 EE 112 (268)
T ss_pred cC
Confidence 54
No 150
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=41.26 E-value=51 Score=27.96 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=30.9
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL 154 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~ 154 (364)
...++.+++.|.+-+| |-. .+|. ..--|..|++++|+.||+|
T Consensus 84 ~lia~ra~~kgi~~vV--------fdr------------~g~~--yhgRV~Ala~~AreaGL~f 125 (125)
T COG0256 84 KLIAERALAKGIEEVV--------FDR------------GGYK--YHGRVAALADGAREAGLEF 125 (125)
T ss_pred HHHHHHHHHcCCcEEE--------EcC------------CCCC--cchHHHHHHHHHHHcCcCC
Confidence 4578899999999999 221 1111 1234999999999999986
No 151
>PLN02334 ribulose-phosphate 3-epimerase
Probab=41.14 E-value=88 Score=28.80 Aligned_cols=49 Identities=22% Similarity=0.321 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
||+.+++++.++||.++.+-... + ..|...+.++.+++.|+++|+..++
T Consensus 76 ~p~d~~~~~~~~gad~v~vH~~q----~-------------------~~d~~~~~~~~i~~~g~~iGls~~~ 124 (229)
T PLN02334 76 NPEDYVPDFAKAGASIFTFHIEQ----A-------------------STIHLHRLIQQIKSAGMKAGVVLNP 124 (229)
T ss_pred CHHHHHHHHHHcCCCEEEEeecc----c-------------------cchhHHHHHHHHHHCCCeEEEEECC
Confidence 79999999999999998764330 0 0255678889999999999999863
No 152
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=40.58 E-value=2.4e+02 Score=30.47 Aligned_cols=107 Identities=27% Similarity=0.399 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcCCCEEEEe--eeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE-----------
Q 047217 90 ASQWVHAAKSAGFNRVILT--AKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL----------- 156 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlT--aKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl----------- 156 (364)
+++-+.-+|++|...|=|. +. |.|---|-=..+-|=...+.|. ..|=++.|++||+++||.|.|
T Consensus 167 a~~llpYl~elG~T~IELMPv~e-~p~~~sWGYq~~g~yAp~sryG--tPedfk~fVD~aH~~GIgViLD~V~~HF~~d~ 243 (628)
T COG0296 167 AIELLPYLKELGITHIELMPVAE-HPGDRSWGYQGTGYYAPTSRYG--TPEDFKALVDAAHQAGIGVILDWVPNHFPPDG 243 (628)
T ss_pred HHHHhHHHHHhCCCEEEEccccc-CCCCCCCCCCcceeccccccCC--CHHHHHHHHHHHHHcCCEEEEEecCCcCCCCc
Confidence 7888888999999987543 44 4444556555444322334553 357799999999999999987
Q ss_pred -EeCCCC------C------CCCCCCC------chhhHHHHHHHHHHHHHccCccceeeecCC
Q 047217 157 -YLSPWD------R------HEPSYGK------TLEYNEFYMAQMAELLTRYGEIKEVWLDGA 200 (364)
Q Consensus 157 -YyS~~d------w------~~~~y~~------~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~ 200 (364)
|++.+| - .++.|+. ..+-..|+.+-..-.++.|. ||+|-+|..
T Consensus 244 ~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yH-iDGlRvDAV 305 (628)
T COG0296 244 NYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWLEEYH-IDGLRVDAV 305 (628)
T ss_pred chhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHHHHhC-Ccceeeehh
Confidence 221111 0 1222322 12446788888888999998 588888863
No 153
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=40.41 E-value=92 Score=27.73 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
.|++.+++.++++|+..+++ |++ + .|-..+..+.+|+.|+++++-.|.
T Consensus 66 ~~~~~~~~~~~~~gadgv~v----h~~--------------------~-~~~~~~~~~~~~~~g~~~~~~~~~ 113 (210)
T TIGR01163 66 ENPDRYIEDFAEAGADIITV----HPE--------------------A-SEHIHRLLQLIKDLGAKAGIVLNP 113 (210)
T ss_pred CCHHHHHHHHHHcCCCEEEE----ccC--------------------C-chhHHHHHHHHHHcCCcEEEEECC
Confidence 36889999999999999887 331 0 133456679999999999998874
No 154
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=40.37 E-value=52 Score=27.94 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCC-eeEEEeC
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGV-DLGLYLS 159 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Gl-k~GlYyS 159 (364)
=.|++.++.+++.++..+++.+- . +..-..+++++++++++|+ .+-++--
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl------------~----------~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSL------------A----------GGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCc------------h----------hhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 45899999999999999999653 0 1224779999999999987 4444443
No 155
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=40.36 E-value=40 Score=31.79 Aligned_cols=32 Identities=28% Similarity=0.520 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEeeeecCCcc
Q 047217 85 PTRLNASQWVHAAKSAGFNRVILTAKHHDGFC 116 (364)
Q Consensus 85 p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~ 116 (364)
++.+|+-+||+.+.+.||.-++||+--.||-.
T Consensus 152 ~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGtk 183 (256)
T COG0107 152 DTGLDAVEWAKEVEELGAGEILLTSMDRDGTK 183 (256)
T ss_pred CCCcCHHHHHHHHHHcCCceEEEeeecccccc
Confidence 47899999999999999999999999999854
No 156
>PLN02803 beta-amylase
Probab=39.96 E-value=74 Score=33.50 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLG 155 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G 155 (364)
=...++++++-|+.-. || +.-|=|++... +...+ | -.||..+..||+++||++.
T Consensus 401 Y~~Ia~mf~rh~~~l~-FT-----ClEM~D~eqp~-~~~s~----P-e~Lv~Qv~~aa~~~Gv~~a 454 (548)
T PLN02803 401 YLPIARMFSKHGVVLN-FT-----CMEMRDGEQPE-HANCS----P-EGLVRQVKMATRTAGTELA 454 (548)
T ss_pred HHHHHHHHHHcCCeEE-EE-----ecCcccCCCCc-cccCC----H-HHHHHHHHHHHHHcCCcee
Confidence 4579999999998763 33 34466666432 22222 3 4899999999999999986
No 157
>PF13069 DUF3933: Protein of unknown function (DUF3933)
Probab=39.77 E-value=18 Score=25.07 Aligned_cols=17 Identities=29% Similarity=0.563 Sum_probs=15.1
Q ss_pred HcCCCEEEEeeeecCCc
Q 047217 99 SAGFNRVILTAKHHDGF 115 (364)
Q Consensus 99 ~aGakYvvlTaKHHdGF 115 (364)
..|-+|+|+|++..+|.
T Consensus 36 rtg~ry~vitaeea~gl 52 (53)
T PF13069_consen 36 RTGNRYVVITAEEAEGL 52 (53)
T ss_pred ccCCEEEEEEehhhccC
Confidence 57999999999999885
No 158
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=39.71 E-value=51 Score=30.55 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=27.7
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeeeecCCcc
Q 047217 86 TRLNASQWVHAAKSAGFNRVILTAKHHDGFC 116 (364)
Q Consensus 86 ~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~ 116 (364)
+..++.+|++.+.+.|++.+++|.-..||-.
T Consensus 145 ~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~ 175 (229)
T PF00977_consen 145 SGIDLEEFAKRLEELGAGEIILTDIDRDGTM 175 (229)
T ss_dssp EEEEHHHHHHHHHHTT-SEEEEEETTTTTTS
T ss_pred CCcCHHHHHHHHHhcCCcEEEEeeccccCCc
Confidence 4689999999999999999999999999965
No 159
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=39.00 E-value=50 Score=34.31 Aligned_cols=96 Identities=14% Similarity=0.180 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCCEEEEeeeecCCcccCCCCC-CCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC---CCC
Q 047217 92 QWVHAAKSAGFNRVILTAKHHDGFCLWPSEY-TDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRH---EPS 167 (364)
Q Consensus 92 ~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~-t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~---~~~ 167 (364)
+=++++++.|++..=+....+-= .|.-. ...|- ..-+-..+++++|+++||++.+-+++||-- ...
T Consensus 75 eDi~l~~~lG~~~yR~si~WsRi---~P~g~~~~~n~-------~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~ 144 (474)
T PRK09852 75 EDIALMAEMGFKVFRTSIAWSRL---FPQGDELTPNQ-------QGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTE 144 (474)
T ss_pred HHHHHHHHcCCCeEEeeceeeee---eeCCCCCCCCH-------HHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHh
Confidence 33689999999887766553211 11110 01111 114678899999999999998887776531 112
Q ss_pred CCC--chhhHHHHHHHHHHHHHccCccceeee
Q 047217 168 YGK--TLEYNEFYMAQMAELLTRYGEIKEVWL 197 (364)
Q Consensus 168 y~~--~~~y~~~~~~Ql~EL~~~Yg~i~~~Wf 197 (364)
|+. ..+..+++..-.+-+.++||+..-.|+
T Consensus 145 ~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk~Wi 176 (474)
T PRK09852 145 YGSWRNRKMVEFFSRYARTCFEAFDGLVKYWL 176 (474)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCcCCeEE
Confidence 221 123444444445555666666433443
No 160
>PRK09505 malS alpha-amylase; Reviewed
Probab=38.42 E-value=79 Score=34.48 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=41.2
Q ss_pred HHHHHHHHHHcCCCEEEEee--eecCCccc------CC-CCCC-----CCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 047217 90 ASQWVHAAKSAGFNRVILTA--KHHDGFCL------WP-SEYT-----DYSVKSSEWKNGTGDVVAELALAAKEAGVDLG 155 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTa--KHHdGF~l------W~-S~~t-----~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G 155 (364)
-.+.++-++++|..-|-|+. +|.+|..- +| ..++ +|.... |.-|. .+-+++|+++|+++|||+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id-~~~Gt-~~dfk~Lv~~aH~~Gi~Vi 309 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLD-ANMGT-EADLRTLVDEAHQRGIRIL 309 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCC-CCCCC-HHHHHHHHHHHHHCCCEEE
Confidence 55678899999999998874 34333210 11 1222 232111 32233 5679999999999999987
Q ss_pred E
Q 047217 156 L 156 (364)
Q Consensus 156 l 156 (364)
+
T Consensus 310 l 310 (683)
T PRK09505 310 F 310 (683)
T ss_pred E
Confidence 7
No 161
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=38.18 E-value=1.5e+02 Score=28.03 Aligned_cols=73 Identities=23% Similarity=0.192 Sum_probs=48.6
Q ss_pred CCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHH-HHHccCcccee-eecCCCCCCCcchhhhHH
Q 047217 136 TGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAE-LLTRYGEIKEV-WLDGAKGEGEKDMEYFFD 213 (364)
Q Consensus 136 krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~E-L~~~Yg~i~~~-WfDg~~~~~~~~~~~~~~ 213 (364)
.-|++.++.+.|.++|.++.++=+. ++ ..+++.+ |..+| ++... ..+|.... . +.+
T Consensus 90 G~dl~~~ll~~~~~~~~~v~llG~~-----------~~----v~~~a~~~l~~~y-~l~i~g~~~Gyf~~----~--e~~ 147 (243)
T PRK03692 90 GADLWEALMARAGKEGTPVFLVGGK-----------PE----VLAQTEAKLRTQW-NVNIVGSQDGYFTP----E--QRQ 147 (243)
T ss_pred hHHHHHHHHHHHHhcCCeEEEECCC-----------HH----HHHHHHHHHHHHh-CCEEEEEeCCCCCH----H--HHH
Confidence 3699999999999999998887552 22 3333333 44678 55544 34554321 1 235
Q ss_pred HHHHHHHhhCCCeEEec
Q 047217 214 SWFSLIHQLQPRAVIFS 230 (364)
Q Consensus 214 ~~~~~i~~~qP~~vi~~ 230 (364)
++.+.|.+.+||.|+.+
T Consensus 148 ~i~~~I~~s~~dil~Vg 164 (243)
T PRK03692 148 ALFERIHASGAKIVTVA 164 (243)
T ss_pred HHHHHHHhcCCCEEEEE
Confidence 68889999999998764
No 162
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=37.64 E-value=70 Score=30.42 Aligned_cols=56 Identities=14% Similarity=0.011 Sum_probs=41.6
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
..+-|+.+|++|+.++-=- -|+-.++.|+ |+|+..+=+++|.++|++.||.+..--
T Consensus 31 ~~~~a~~~~~~g~~~~r~g--------~~kpRts~~s-----f~G~G~~gl~~L~~~~~~~Gl~~~Tev 86 (250)
T PRK13397 31 IRLAASSAKKLGYNYFRGG--------AYKPRTSAAS-----FQGLGLQGIRYLHEVCQEFGLLSVSEI 86 (250)
T ss_pred HHHHHHHHHHcCCCEEEec--------ccCCCCCCcc-----cCCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 3456777899998776432 3666666664 457777889999999999999987743
No 163
>PF07488 Glyco_hydro_67M: Glycosyl hydrolase family 67 middle domain; InterPro: IPR011100 Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the central catalytic domain of alpha-glucuronidase [].; GO: 0046559 alpha-glucuronidase activity, 0045493 xylan catabolic process, 0005576 extracellular region; PDB: 1MQP_A 1K9E_A 1MQQ_A 1L8N_A 1K9D_A 1MQR_A 1K9F_A 1GQL_A 1GQI_B 1GQJ_B ....
Probab=37.56 E-value=2.3e+02 Score=27.93 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC---CC-----
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLS---PW----- 161 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS---~~----- 161 (364)
..+.|++....|..-+|+.--.-+...| .+++ .+=|+.|++.+|.+|||++|... +.
T Consensus 59 ~~~YARllASiGINgvvlNNVNa~~~~L-----------t~~~----l~~v~~lAdvfRpYGIkv~LSvnFasP~~lggL 123 (328)
T PF07488_consen 59 YRDYARLLASIGINGVVLNNVNANPKLL-----------TPEY----LDKVARLADVFRPYGIKVYLSVNFASPIELGGL 123 (328)
T ss_dssp HHHHHHHHHHTT--EEE-S-SS--CGGG-----------STTT----HHHHHHHHHHHHHTT-EEEEEE-TTHHHHTTS-
T ss_pred HHHHHHHHhhcCCceEEecccccChhhc-----------CHHH----HHHHHHHHHHHhhcCCEEEEEeeccCCcccCCc
Confidence 5789999999999999997654444111 1122 46699999999999999988664 11
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHccCcc
Q 047217 162 DRHEPSYGKTLEYNEFYMAQMAELLTRYGEI 192 (364)
Q Consensus 162 dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i 192 (364)
+-.+|. +++-.+.+.....|+-+...+.
T Consensus 124 ~TaDPl---d~~V~~WW~~k~~eIY~~IPDf 151 (328)
T PF07488_consen 124 PTADPL---DPEVRQWWKDKADEIYSAIPDF 151 (328)
T ss_dssp S---TT---SHHHHHHHHHHHHHHHHH-TT-
T ss_pred CcCCCC---CHHHHHHHHHHHHHHHHhCCCc
Confidence 111221 4567788888888888766554
No 164
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=37.42 E-value=40 Score=35.68 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEeeeecCCcc
Q 047217 85 PTRLNASQWVHAAKSAGFNRVILTAKHHDGFC 116 (364)
Q Consensus 85 p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~ 116 (364)
.+..|+.+|++.+.+.||..+++|.-..||-.
T Consensus 435 ~~~~~~~~~~~~~~~~Gageil~t~id~DGt~ 466 (538)
T PLN02617 435 GRPIGAYELAKAVEELGAGEILLNCIDCDGQG 466 (538)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEeeccccccc
Confidence 57899999999999999999999999999843
No 165
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=37.37 E-value=48 Score=24.05 Aligned_cols=45 Identities=27% Similarity=0.263 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLG 155 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G 155 (364)
...|++.++.+++.|++.+.+|=. +.. .-+-++.+.+++.||++-
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh---------------~~~---------~~~~~~~~~~~~~gi~~i 58 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDH---------------GNL---------FGAVEFYKAAKKAGIKPI 58 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeC---------------Ccc---------cCHHHHHHHHHHcCCeEE
Confidence 467999999999999999998643 111 113478888999999874
No 166
>PLN02905 beta-amylase
Probab=36.91 E-value=82 Score=33.89 Aligned_cols=78 Identities=9% Similarity=-0.096 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCC-C-ccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCC
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTD-Y-SVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPS 167 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~-~-~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~ 167 (364)
=...++++|+.|+.-. || +.-|=|++... | ....+ | -.||..+..||+++||.+.==-++
T Consensus 577 Y~pIa~mfarh~~~l~-FT-----ClEM~D~eqp~~~~~a~ss----P-E~LV~QV~~aA~~~GV~vaGENAL------- 638 (702)
T PLN02905 577 YAAIASMLKKHGAALN-FV-----CGEVQMLNRPDDFSEALGD----P-EGLAWQVLNAAWDVDTPVASENSL------- 638 (702)
T ss_pred HHHHHHHHHHcCCeEE-EE-----ecccccCCCCCccccccCC----H-HHHHHHHHHHHHHhCCceeccccc-------
Confidence 4579999999998763 33 34466666542 3 22222 3 489999999999999998622211
Q ss_pred CCCchhhHHHHHHHHHHHHHcc
Q 047217 168 YGKTLEYNEFYMAQMAELLTRY 189 (364)
Q Consensus 168 y~~~~~y~~~~~~Ql~EL~~~Y 189 (364)
..|+.--+.||.|-...|
T Consensus 639 ----~r~D~~ay~qI~~na~~~ 656 (702)
T PLN02905 639 ----PCHDRVGYNKILENAKPL 656 (702)
T ss_pred ----cccCHHHHHHHHHHhhcc
Confidence 124444556777766655
No 167
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=36.74 E-value=91 Score=34.48 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCCCCCCCH-HHHHHHHHHcCCCEEEEee
Q 047217 82 VFNPTRLNA-SQWVHAAKSAGFNRVILTA 109 (364)
Q Consensus 82 ~F~p~~fD~-~~Wa~l~k~aGakYvvlTa 109 (364)
++++..|-. .+.++.+.+-|+||+++.-
T Consensus 344 Tvd~~~fp~~~~fv~~Lh~~G~kyvliid 372 (805)
T KOG1065|consen 344 TVDKVWFPDLKDFVDDLHARGFKYVLIID 372 (805)
T ss_pred eeccccCcchHHHHHHHHhCCCeEEEEeC
Confidence 357777777 8889999999999988864
No 168
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=36.20 E-value=1.2e+02 Score=30.47 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLY 157 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlY 157 (364)
..|+.+-++.++++|+..|-+ |.+. +||-... . ......+.++.++++++||++...
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~---~~~d--l~P~~~~-----~----~e~~~~~~~lk~~L~~~GL~v~~v 87 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTF---HDDD--LIPFGAP-----P----QERDQIVRRFKKALDETGLKVPMV 87 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEe---cccc--cCCCCCC-----h----hHHHHHHHHHHHHHHHhCCeEEEe
Confidence 379999999999999998865 2222 2332111 0 011234899999999999997653
No 169
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=36.19 E-value=55 Score=32.45 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=51.0
Q ss_pred HHHHHHHHHcCCeeEEEeCCCCCCC-CC-----CCCchhhHHHHHHHHHHHHHccCccceeeecCCCCC-CCc---chhh
Q 047217 141 AELALAAKEAGVDLGLYLSPWDRHE-PS-----YGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGE-GEK---DMEY 210 (364)
Q Consensus 141 ~El~~A~rk~Glk~GlYyS~~dw~~-~~-----y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~-~~~---~~~~ 210 (364)
.++++|++|+|+|+.--+. .+|.. .. -.++.+-...+..+|-||+..||= |++-+|--... +.. ...-
T Consensus 49 ~~~idaAHknGV~Vlgti~-~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGf-DGw~iN~E~~~~~~~~~~~l~~ 126 (339)
T cd06547 49 ADWINAAHRNGVPVLGTFI-FEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGF-DGWLINIETELGDAEKAKRLIA 126 (339)
T ss_pred cHHHHHHHhcCCeEEEEEE-ecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCC-CceEeeeeccCCcHHHHHHHHH
Confidence 4789999999999865443 23321 10 011123334567899999999995 77777754433 111 1111
Q ss_pred hHHHHHHHHHhhCCCe-EEecC
Q 047217 211 FFDSWFSLIHQLQPRA-VIFSD 231 (364)
Q Consensus 211 ~~~~~~~~i~~~qP~~-vi~~~ 231 (364)
.+.++.+.+++..|+. ||+.|
T Consensus 127 F~~~L~~~~~~~~~~~~v~WYD 148 (339)
T cd06547 127 FLRYLKAKLHENVPGSLVIWYD 148 (339)
T ss_pred HHHHHHHHHhhcCCCcEEEEEe
Confidence 3445556666666654 44544
No 170
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=36.17 E-value=1.4e+02 Score=33.87 Aligned_cols=25 Identities=12% Similarity=0.482 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHccCccceeeecCC
Q 047217 174 YNEFYMAQMAELLTRYGEIKEVWLDGA 200 (364)
Q Consensus 174 y~~~~~~Ql~EL~~~Yg~i~~~WfDg~ 200 (364)
-.+++..++++|++ +| ++.+|.|+.
T Consensus 311 ar~WW~~~~k~l~d-~G-VDG~W~Dmn 335 (978)
T PLN02763 311 TRSWWANLVKDFVS-NG-VDGIWNDMN 335 (978)
T ss_pred HHHHHHHHHHHHhc-CC-CcEEEccCC
Confidence 35677778888775 66 699999985
No 171
>PLN02814 beta-glucosidase
Probab=36.04 E-value=60 Score=34.03 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD 162 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d 162 (364)
++=++++|++|++..=+..-=-- +.|.-....|-. .-|.-.+|+++|+++||++.+-+++||
T Consensus 80 ~EDI~L~k~lG~~ayRfSIsWsR---I~P~G~g~~N~~-------Gl~fY~~lId~l~~~GI~P~VTL~H~d 141 (504)
T PLN02814 80 KEDVKLMAEMGLESFRFSISWSR---LIPNGRGLINPK-------GLLFYKNLIKELRSHGIEPHVTLYHYD 141 (504)
T ss_pred HHHHHHHHHcCCCEEEEeccHhh---cCcCCCCCCCHH-------HHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 34478999999987655433000 111111112211 146778999999999999999999876
No 172
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=35.98 E-value=65 Score=28.01 Aligned_cols=45 Identities=27% Similarity=0.265 Sum_probs=33.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
|+|.+++|.+..+.=|++.+ ..+.+.+++.++.++||++|+.-.+
T Consensus 52 p~e~v~aA~~~dv~vIgvSs----------------------l~g~h~~l~~~lve~lre~G~~~i~ 96 (143)
T COG2185 52 PEEAVRAAVEEDVDVIGVSS----------------------LDGGHLTLVPGLVEALREAGVEDIL 96 (143)
T ss_pred HHHHHHHHHhcCCCEEEEEe----------------------ccchHHHHHHHHHHHHHHhCCcceE
Confidence 57777777666665555532 2366789999999999999988766
No 173
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=35.87 E-value=74 Score=31.84 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
..+-|+.+|++|++++- | ..|+..+++|+ |+|...+=+.+|.+.|++.||.+..--
T Consensus 134 ~~~~A~~lk~~g~~~~r-------~-~~~kpRtsp~~-----f~g~~~e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 134 VEAVAKALKAKGLKLLR-------G-GAFKPRTSPYD-----FQGLGVEGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred HHHHHHHHHHcCCcEEE-------c-cccCCCCCCcc-----ccCCCHHHHHHHHHHHHHcCCCEEEee
Confidence 34567777888887765 1 34555566654 567777889999999999999987743
No 174
>PLN02361 alpha-amylase
Probab=35.79 E-value=88 Score=31.79 Aligned_cols=61 Identities=18% Similarity=0.204 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCEEEEeeeec--CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 91 SQWVHAAKSAGFNRVILTAKHH--DGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHH--dGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
.+-++-++++|...|-|+--.. .+.-.|+..+ |++. +-| |. .+=+++|+++|+++||++.+
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~--y~~~-~~~-Gt-~~el~~li~~~h~~gi~vi~ 94 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNL--YSLN-SAY-GS-EHLLKSLLRKMKQYNVRAMA 94 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccc--cccC-ccc-CC-HHHHHHHHHHHHHcCCEEEE
Confidence 4446778999999998876432 1111222222 2232 223 33 46689999999999999876
No 175
>TIGR03586 PseI pseudaminic acid synthase.
Probab=35.68 E-value=69 Score=31.63 Aligned_cols=66 Identities=27% Similarity=0.332 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCC-----------CCCCChHHHHHHHHHHcCCeeEE
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWK-----------NGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~-----------g~krDlV~El~~A~rk~Glk~Gl 156 (364)
+.+.++.+++|||.-|=|-+-.-+-+.. ++....|......|. --..|-..+|.+.|++.||.|..
T Consensus 19 A~~lI~~A~~aGAdavKFQ~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~s 95 (327)
T TIGR03586 19 ALAMIEAAKAAGADAIKLQTYTPDTITL-DSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIFS 95 (327)
T ss_pred HHHHHHHHHHhCCCEEEeeeccHHHhhc-cccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEEE
Confidence 7889999999999977666544343321 111011111111110 01246678999999999999865
No 176
>PF15284 PAGK: Phage-encoded virulence factor
Probab=35.64 E-value=35 Score=25.20 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHHHhhhcCCCC
Q 047217 10 KPISQNLILTLLALYFIPISNSP 32 (364)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~ 32 (364)
++++..|+++|.++.|++...++
T Consensus 5 ksifL~l~~~LsA~~FSasamAa 27 (61)
T PF15284_consen 5 KSIFLALVFILSAAGFSASAMAA 27 (61)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Confidence 45666666666666666544433
No 177
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=35.36 E-value=58 Score=30.73 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEeeeecCCcc
Q 047217 85 PTRLNASQWVHAAKSAGFNRVILTAKHHDGFC 116 (364)
Q Consensus 85 p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~ 116 (364)
....+|.++++.+.+.|+..+++|.-+-||..
T Consensus 149 ~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~ 180 (258)
T PRK01033 149 KLKKDPLELAKEYEALGAGEILLNSIDRDGTM 180 (258)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEEccCCCCCc
Confidence 45789999999999999999999999888843
No 178
>PLN02705 beta-amylase
Probab=35.32 E-value=67 Score=34.39 Aligned_cols=55 Identities=11% Similarity=-0.015 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLG 155 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G 155 (364)
=...++++|+.|+.- .|| ..+|=+++..+.+...+ | -.||..+..||+++||.+.
T Consensus 559 Y~pIa~mfarh~~~l-~FT-----C~eMe~~d~~~~~a~s~----P-E~LV~QV~~aA~~~Gv~va 613 (681)
T PLN02705 559 YSPVFETLKKHSVTV-KFV-----CSGLQMSPNENDEALAD----P-EGLSWQVLNSAWDRGLTVA 613 (681)
T ss_pred HHHHHHHHHHcCceE-EEE-----eccccccCCCCCccCCC----H-HHHHHHHHHHHHHcCCcee
Confidence 457899999999876 222 12333444322222222 3 5999999999999999986
No 179
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=35.24 E-value=3.2e+02 Score=26.93 Aligned_cols=78 Identities=21% Similarity=0.141 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCcccee-eecCCCCCCCcchhhhHHHH
Q 047217 137 GDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEV-WLDGAKGEGEKDMEYFFDSW 215 (364)
Q Consensus 137 rDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~-WfDg~~~~~~~~~~~~~~~~ 215 (364)
-|.+.+.++.+|+.|+++.++.+.-..+ + .+++..+.++ +..||. +.+ --|...... ..+..++
T Consensus 113 ~d~~~~~i~~ak~~G~~v~~~l~~s~~~------~---~e~l~~~a~~-~~~~Ga-~~i~i~DT~G~~~----P~~v~~~ 177 (333)
T TIGR03217 113 ADVSEQHIGMARELGMDTVGFLMMSHMT------P---PEKLAEQAKL-MESYGA-DCVYIVDSAGAML----PDDVRDR 177 (333)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEcccCC------C---HHHHHHHHHH-HHhcCC-CEEEEccCCCCCC----HHHHHHH
Confidence 3789999999999999988877632111 1 2445555554 557998 444 446543221 1234556
Q ss_pred HHHHHh-hCCCeEEe
Q 047217 216 FSLIHQ-LQPRAVIF 229 (364)
Q Consensus 216 ~~~i~~-~qP~~vi~ 229 (364)
+..+++ +.|++-|-
T Consensus 178 v~~l~~~l~~~i~ig 192 (333)
T TIGR03217 178 VRALKAVLKPETQVG 192 (333)
T ss_pred HHHHHHhCCCCceEE
Confidence 666654 34555443
No 180
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=35.00 E-value=2.7e+02 Score=26.93 Aligned_cols=58 Identities=10% Similarity=0.147 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccceeeec
Q 047217 138 DVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLD 198 (364)
Q Consensus 138 DlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfD 198 (364)
+-+.+.+++||++|+|+-+..-.+.... -..+..-.+-+...+.+++.+|| +|++=||
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG~~~~~--~~~~~~~~~~fa~sl~~~~~~~g-~DGiDiD 117 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGGANGHV--DLNHTAQEDNFVDSIVAIIKEYG-FDGLDID 117 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCcc--ccCCHHHHHHHHHHHHHHHHHhC-CCeEEEe
Confidence 3466777899999999998876544221 12233444556678889999998 3555444
No 181
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=34.95 E-value=64 Score=33.52 Aligned_cols=90 Identities=11% Similarity=0.197 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCC--CccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC---C
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTD--YSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRH---E 165 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~--~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~---~ 165 (364)
++=++++|++|++..=+... |+-=..+ -...| ...-|--.+++++|+++||++.+-+.+||-- .
T Consensus 72 ~EDI~Lm~elG~~~yRfSIs-------WsRI~P~G~~~~~N----~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~ 140 (477)
T PRK15014 72 KEDIKLFAEMGFKCFRTSIA-------WTRIFPKGDEAQPN----EEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLV 140 (477)
T ss_pred HHHHHHHHHcCCCEEEeccc-------ceeeccCCCCCCCC----HHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHH
Confidence 45578999999987655433 3211110 00001 0124778899999999999999999887632 1
Q ss_pred CCCCC--chhhHHHHHHHHHHHHHccCc
Q 047217 166 PSYGK--TLEYNEFYMAQMAELLTRYGE 191 (364)
Q Consensus 166 ~~y~~--~~~y~~~~~~Ql~EL~~~Yg~ 191 (364)
..|+. ..+..+++..-.+-+.++||+
T Consensus 141 ~~yGGW~n~~~~~~F~~Ya~~~f~~fgd 168 (477)
T PRK15014 141 QQYGSWTNRKVVDFFVRFAEVVFERYKH 168 (477)
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 12221 123334444444455566665
No 182
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=34.75 E-value=1.6e+02 Score=27.95 Aligned_cols=103 Identities=16% Similarity=0.213 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCC
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPS 167 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~ 167 (364)
=++=+.++.++++||..++++.-++-. . ..++++.-+.+-|..-++.+.+|..+--.
T Consensus 83 ~~~i~~a~~a~~~Gad~v~v~~P~~~~----------~---------s~~~l~~y~~~ia~~~~~pi~iYn~P~~t---- 139 (289)
T PF00701_consen 83 EEAIELARHAQDAGADAVLVIPPYYFK----------P---------SQEELIDYFRAIADATDLPIIIYNNPART---- 139 (289)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESTSSS----------C---------CHHHHHHHHHHHHHHSSSEEEEEEBHHHH----
T ss_pred HHHHHHHHHHhhcCceEEEEecccccc----------c---------hhhHHHHHHHHHHhhcCCCEEEEECCCcc----
Confidence 457788999999999999998764421 0 11467777777777778999999885110
Q ss_pred CCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeEEec
Q 047217 168 YGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFS 230 (364)
Q Consensus 168 y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~ 230 (364)
+ .++-.+.+.+|.+ -+.|.++= | ...++.++.+.++...|+..|+.
T Consensus 140 -g-----~~ls~~~l~~L~~-~~nv~giK-~---------s~~~~~~~~~~~~~~~~~~~v~~ 185 (289)
T PF00701_consen 140 -G-----NDLSPETLARLAK-IPNVVGIK-D---------SSGDLERLIQLLRAVGPDFSVFC 185 (289)
T ss_dssp -S-----STSHHHHHHHHHT-STTEEEEE-E---------SSSBHHHHHHHHHHSSTTSEEEE
T ss_pred -c-----cCCCHHHHHHHhc-CCcEEEEE-c---------CchhHHHHHHHhhhcccCeeeec
Confidence 0 0123355677776 45443331 1 12234667777887788877663
No 183
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=34.75 E-value=36 Score=32.06 Aligned_cols=61 Identities=25% Similarity=0.158 Sum_probs=36.7
Q ss_pred HHHHHHcCCCEEEEeeeecCCcccCC-------CCCCC-----Ccc-ccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 047217 94 VHAAKSAGFNRVILTAKHHDGFCLWP-------SEYTD-----YSV-KSSEWKNGTGDVVAELALAAKEAGVDLGLY 157 (364)
Q Consensus 94 a~l~k~aGakYvvlTaKHHdGF~lW~-------S~~t~-----~~v-~~~p~~g~krDlV~El~~A~rk~Glk~GlY 157 (364)
++.|++|||.-|=|-+..-|.+..=. ++.+. +.. ...- -.+|-..+|.+.||++||.|...
T Consensus 2 I~~A~~aGaDaVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~~~~~~~~~~e---l~~e~~~~L~~~~~~~gi~f~st 75 (241)
T PF03102_consen 2 IDAAAEAGADAVKFQTFTAEELYSPNAYKAPYQSPNGWGDESYYELFKKLE---LSEEQHKELFEYCKELGIDFFST 75 (241)
T ss_dssp HHHHHHHT-SEEEEEEB-HHHHCSGGGGG-------TT-SSTHHHHHHHHS---S-HHHHHHHHHHHHHTT-EEEEE
T ss_pred HHHHHHhCCCEEEEEEEchhhhcChhhhcccccccCCCCCCcHHHHHHHhc---CCHHHHHHHHHHHHHcCCEEEEC
Confidence 68999999999998888766655321 22111 111 1111 12577889999999999998764
No 184
>PLN00197 beta-amylase; Provisional
Probab=34.72 E-value=76 Score=33.55 Aligned_cols=54 Identities=20% Similarity=0.111 Sum_probs=38.6
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLG 155 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G 155 (364)
=...++++++-|+.-.. | ++-|=|++.... ...+ | -.||..+..||+++||.+.
T Consensus 422 Y~~Ia~mfarh~~~l~F-T-----ClEM~D~eqp~~-a~s~----P-E~Lv~QV~~aA~~~Gv~va 475 (573)
T PLN00197 422 YLPIAQMLARHGAIFNF-T-----CIEMRDHEQPQD-ALCA----P-EKLVRQVALATREAEVPLA 475 (573)
T ss_pred HHHHHHHHHHcCCeEEE-E-----ecCcccCCCCcc-ccCC----H-HHHHHHHHHHHHHcCCcEe
Confidence 46799999999987633 3 344666664332 2222 3 4899999999999999986
No 185
>PLN02161 beta-amylase
Probab=34.70 E-value=92 Score=32.63 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=37.9
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLG 155 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G 155 (364)
...|+++|+-|+.-. || +.-|=|++..+. ...+| -.||..+..||+++||++.
T Consensus 419 ~~Ia~m~~rh~~~l~-FT-----ClEM~D~eq~~~-~~s~P-----e~Lv~QV~~aa~~~Gv~~a 471 (531)
T PLN02161 419 DPVASVLSRHGAALH-IP-----CLDMADSETPEK-YLCSP-----EGLRQQIHDVSKKWTIHVT 471 (531)
T ss_pred HHHHHHHHHcCceEE-EE-----eccccCCCCCcc-ccCCH-----HHHHHHHHHHHHHcCCcee
Confidence 468999999998763 33 335666665432 22223 5999999999999999986
No 186
>PLN02591 tryptophan synthase
Probab=33.74 E-value=86 Score=29.70 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
++..|.+++.++++|+.-+++. | -|+ +=..++.++|+++||.+-+..|+
T Consensus 92 ~~G~~~F~~~~~~aGv~Gviip---------------D-----LP~-----ee~~~~~~~~~~~gl~~I~lv~P 140 (250)
T PLN02591 92 KRGIDKFMATIKEAGVHGLVVP---------------D-----LPL-----EETEALRAEAAKNGIELVLLTTP 140 (250)
T ss_pred HhHHHHHHHHHHHcCCCEEEeC---------------C-----CCH-----HHHHHHHHHHHHcCCeEEEEeCC
Confidence 4678999999999999999987 1 121 55779999999999999999986
No 187
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=33.74 E-value=85 Score=26.88 Aligned_cols=46 Identities=13% Similarity=0.117 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL 154 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~ 154 (364)
.--|+++++++++-++.-+.+.+-= +..-..++++.+++|++|++-
T Consensus 38 ~v~~e~~v~aa~~~~adiVglS~l~----------------------~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 38 LSPQEEFIKAAIETKADAILVSSLY----------------------GHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeccc----------------------ccCHHHHHHHHHHHHHCCCCC
Confidence 3458999999999999999886531 122467899999999999853
No 188
>PLN02849 beta-glucosidase
Probab=33.68 E-value=67 Score=33.66 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=40.4
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD 162 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d 162 (364)
++=++++|++|++..=+...=-- +.|.-....|-. .-|.-.+++++|+++||+..+-+++||
T Consensus 82 ~eDI~Lm~~lG~~aYRfSIsWsR---I~P~G~g~vN~~-------gl~fY~~lid~l~~~GI~P~VTL~H~d 143 (503)
T PLN02849 82 KEDVKLMVETGLDAFRFSISWSR---LIPNGRGSVNPK-------GLQFYKNFIQELVKHGIEPHVTLFHYD 143 (503)
T ss_pred HHHHHHHHHcCCCeEEEeccHHh---cCcCCCCCCCHH-------HHHHHHHHHHHHHHcCCeEEEeecCCC
Confidence 35578999999987655443000 112211112211 157778999999999999999998876
No 189
>PLN00196 alpha-amylase; Provisional
Probab=33.44 E-value=95 Score=31.81 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCCEEEEeeeec----CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 91 SQWVHAAKSAGFNRVILTAKHH----DGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHH----dGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
.+=++-++++|..-|-|+--.+ .|+ |++.+ |++..+-| |. .+-+++|+++|+++|||+.+
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY--~~~D~--y~ld~~~f-Gt-~~elk~Lv~~aH~~GIkVil 110 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGY--MPGRL--YDLDASKY-GN-EAQLKSLIEAFHGKGVQVIA 110 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCC--Ccccc--CCCCcccC-CC-HHHHHHHHHHHHHCCCEEEE
Confidence 4456788999999998875332 132 22211 34432223 44 46689999999999999865
No 190
>PLN02899 alpha-galactosidase
Probab=33.23 E-value=29 Score=37.09 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHcCCeeEEEeCC
Q 047217 139 VVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 139 lV~El~~A~rk~Glk~GlYyS~ 160 (364)
=++.|++-++..|||||||-..
T Consensus 114 GmK~LADYVHskGLKFGIY~~~ 135 (633)
T PLN02899 114 GFTEVAEKVHAMGLKFGIHVMR 135 (633)
T ss_pred CcHHHHHHHHhCCcceEEEecC
Confidence 3889999999999999999764
No 191
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=32.29 E-value=1.3e+02 Score=28.49 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHH-cCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 87 RLNASQWVHAAKS-AGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 87 ~fD~~~Wa~l~k~-aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
..|+++..+++++ -..|-+++|.-+.+|.+ -| ++++++.|+++|+.+.+
T Consensus 139 ~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~--------------------~d-l~~I~~~~~~~g~~liv 188 (294)
T cd00615 139 GIPPETFKKALIEHPDAKAAVITNPTYYGIC--------------------YN-LRKIVEEAHHRGLPVLV 188 (294)
T ss_pred CCCHHHHHHHHHhCCCceEEEEECCCCCCEe--------------------cC-HHHHHHHHHhcCCeEEE
Confidence 5799999998876 35777777632222322 24 68999999999987654
No 192
>PRK03745 signal recognition particle protein Srp19; Provisional
Probab=32.01 E-value=62 Score=26.37 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=44.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHcCCCEE-EEeeeecCCcc---cCCCCCCCCccccCCCCCCCCChHHHHHHHHHHc
Q 047217 80 PRVFNPTRLNASQWVHAAKSAGFNRV-ILTAKHHDGFC---LWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEA 150 (364)
Q Consensus 80 ~~~F~p~~fD~~~Wa~l~k~aGakYv-vlTaKHHdGF~---lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~ 150 (364)
|..+.-+.=.+++.++++++.|..++ +-..|+|--.. -|- +...+=++.+ .++|++|++.+++..++.
T Consensus 24 ~k~~aV~~P~~~EI~~a~~~lgl~~~~~E~~K~yPr~~g~~~~~-~~~Grv~V~~--~~~K~~ll~~Ia~~ik~~ 95 (100)
T PRK03745 24 PKNLAVERPTLEEIVDAAEALGFKVIEVDREKLNPRLSGIDEEL-RTRGRIVIES--PYGKSKSLKMIAQKIREF 95 (100)
T ss_pred CHHHcccCCCHHHHHHHHHHcCCCcEeeccCCCCCCccCCccch-hcCCEEEecC--CCCHHHHHHHHHHHHHHH
Confidence 44444445568999999999999996 66677774421 122 2222212222 468899999999988864
No 193
>CHL00139 rpl18 ribosomal protein L18; Validated
Probab=31.70 E-value=1e+02 Score=25.44 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL 154 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~ 154 (364)
-...++.++++|-..+||--. ||- | .--|+.|++++|+.||+|
T Consensus 67 G~lla~ra~~~gi~~vvfDrg---g~~--------y-----------hGrV~a~a~~are~GL~f 109 (109)
T CHL00139 67 GQKLAKKSLKKGITKVVFDRG---GKL--------Y-----------HGRIKALAEAAREAGLQF 109 (109)
T ss_pred HHHHHHHHHHCCCCEEEEcCC---CCc--------c-----------chHHHHHHHHHHHhCCCC
Confidence 345788999999999998632 211 1 244999999999999986
No 194
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=31.68 E-value=99 Score=32.01 Aligned_cols=96 Identities=15% Similarity=0.218 Sum_probs=55.3
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC-----
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHE----- 165 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~----- 165 (364)
++=++++|++|++..=+..--.- +.|.-....|-. .-|--.+|+++|+++||+..+-+.+||--.
T Consensus 57 ~eDi~L~~~lG~~~yRfSIsWsR---I~P~G~g~vN~~-------gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~ 126 (469)
T PRK13511 57 PEDLKLAEEFGVNGIRISIAWSR---IFPDGYGEVNPK-------GVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSN 126 (469)
T ss_pred HHHHHHHHHhCCCEEEeeccHhh---cCcCCCCCcCHH-------HHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHc
Confidence 45579999999987665543100 112111111111 246778999999999999999998876211
Q ss_pred CCCCCchhhHHHHHHHHHHHHHccCccceeeec
Q 047217 166 PSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLD 198 (364)
Q Consensus 166 ~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfD 198 (364)
..|.+ .+..+++..=.+-+.++||+ .-.|+=
T Consensus 127 GGW~n-~~~v~~F~~YA~~~~~~fgd-Vk~W~T 157 (469)
T PRK13511 127 GDWLN-RENIDHFVRYAEFCFEEFPE-VKYWTT 157 (469)
T ss_pred CCCCC-HHHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 11221 23333443334556677777 555653
No 195
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=31.65 E-value=2.7e+02 Score=27.70 Aligned_cols=80 Identities=19% Similarity=0.020 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHH
Q 047217 138 DVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFS 217 (364)
Q Consensus 138 DlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~ 217 (364)
+.+.++++.+|++|+++..|+|.-. ..|..+.. -.+++...++++. ..|-..+---|...... .....++++
T Consensus 162 ~~~~~~v~~Ak~~Gl~v~~~is~~f-g~p~~~r~--~~~~l~~~~~~~~-~~Gad~I~l~DT~G~a~----P~~v~~lv~ 233 (347)
T PLN02746 162 VRYREVALAAKKHSIPVRGYVSCVV-GCPIEGPV--PPSKVAYVAKELY-DMGCYEISLGDTIGVGT----PGTVVPMLE 233 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEeee-cCCccCCC--CHHHHHHHHHHHH-HcCCCEEEecCCcCCcC----HHHHHHHHH
Confidence 3455888999999999999988522 11111111 1345555556655 45752333456543221 223455566
Q ss_pred HHHhhCCC
Q 047217 218 LIHQLQPR 225 (364)
Q Consensus 218 ~i~~~qP~ 225 (364)
.+++.-|.
T Consensus 234 ~l~~~~~~ 241 (347)
T PLN02746 234 AVMAVVPV 241 (347)
T ss_pred HHHHhCCC
Confidence 66554454
No 196
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.44 E-value=55 Score=30.61 Aligned_cols=31 Identities=32% Similarity=0.687 Sum_probs=27.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEeeeecCC
Q 047217 84 NPTRLNASQWVHAAKSAGFNRVILTAKHHDG 114 (364)
Q Consensus 84 ~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdG 114 (364)
.++.+++.++++.+.++|+.++++|.-+.+|
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g 179 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAGEILLTSMDRDG 179 (253)
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEcCCcCCC
Confidence 4677899999999999999999999876666
No 197
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=31.43 E-value=69 Score=36.95 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
-.+++.++.||+.|++.+.+| |++++. | +-||.++|+++|||..+
T Consensus 19 ~~i~~lv~~A~~~g~~alAlT---------------Dh~~m~----G-----a~~F~~~a~~~gIkPIi 63 (1107)
T PRK06920 19 CKIDELVVRAKELGYSSLAIT---------------DENVMY----G-----VIPFYKACKKHGIHPII 63 (1107)
T ss_pred CCHHHHHHHHHHCCCCEEEEE---------------eCChHh----H-----HHHHHHHHHHcCCCEee
Confidence 458999999999999999886 333221 1 55899999999999876
No 198
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=31.08 E-value=5.1e+02 Score=25.27 Aligned_cols=134 Identities=20% Similarity=0.259 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHcCCCEEEEeeee---cCCcccCCCCCCCCccccCCCCCCCCChHHHHH-HHHHHcCCeeEEEeCCCCCC
Q 047217 89 NASQWVHAAKSAGFNRVILTAKH---HDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELA-LAAKEAGVDLGLYLSPWDRH 164 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKH---HdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~-~A~rk~Glk~GlYyS~~dw~ 164 (364)
|-++.++.+++.|..-|.|.+-+ +||-+ +.-| |--...|. +.||....+ +.-.+.|+++-.-+...-|.
T Consensus 18 nl~~l~~ri~~~~~~tV~Lqaf~d~~gdg~~--~~~Y--Fpnr~lpv---raDlf~rvawql~tr~~v~VyAWMPvlaf~ 90 (294)
T PF14883_consen 18 NLDKLIQRIKDMGINTVYLQAFADPDGDGNA--DAVY--FPNRHLPV---RADLFNRVAWQLRTRAGVKVYAWMPVLAFD 90 (294)
T ss_pred HHHHHHHHHHHcCCCEEEEEeeeCCCCCCce--eeEE--cCCCCCch---HHHHHHHHHHHHhhhhCCEEEEeeehhhcc
Confidence 45788999999999999999987 45543 1111 11112333 379999999 44448899988888653332
Q ss_pred CCC----------------CCCchhhHHHHHHHHH---HHHHccCccceeee-cCCCCCC-C------------cchh--
Q 047217 165 EPS----------------YGKTLEYNEFYMAQMA---ELLTRYGEIKEVWL-DGAKGEG-E------------KDME-- 209 (364)
Q Consensus 165 ~~~----------------y~~~~~y~~~~~~Ql~---EL~~~Yg~i~~~Wf-Dg~~~~~-~------------~~~~-- 209 (364)
-|. |.+-..|+.-...+|+ |=+.+|.++++|=| |-.--.+ + +++.
T Consensus 91 lp~~~~~~~~~~~~~~~~~y~RLSPf~p~~r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~Kt~~Li 170 (294)
T PF14883_consen 91 LPKVKRADEVRTDRPDPDGYRRLSPFDPEARQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQKTRALI 170 (294)
T ss_pred CCCcchhhhccccCCCCCCceecCCCCHHHHHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHHHHHHHH
Confidence 221 1111233333444444 44558999888877 4321111 1 0010
Q ss_pred hhHHHHHHHHHhhCCCeEEe
Q 047217 210 YFFDSWFSLIHQLQPRAVIF 229 (364)
Q Consensus 210 ~~~~~~~~~i~~~qP~~vi~ 229 (364)
-...++.+.++.++|++...
T Consensus 171 ~ft~eL~~~v~~~rp~lkTA 190 (294)
T PF14883_consen 171 DFTMELAAAVRRYRPDLKTA 190 (294)
T ss_pred HHHHHHHHHHHHhCccchhh
Confidence 12456778999999988643
No 199
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=30.75 E-value=58 Score=32.49 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeeeecCCccc
Q 047217 86 TRLNASQWVHAAKSAGFNRVILTAKHHDGFCL 117 (364)
Q Consensus 86 ~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~l 117 (364)
...+|++.+++++++++|.+|++ |+|-|.+
T Consensus 259 ~hm~p~ea~~~a~~l~ak~vIpi--H~dtf~~ 288 (355)
T PRK11709 259 DKMTSIDILRMAESLNAKVVIPV--HHDIWSN 288 (355)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEE--Chhhccc
Confidence 46899999999999999988876 8886664
No 200
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=30.21 E-value=7.4e+02 Score=26.91 Aligned_cols=32 Identities=13% Similarity=0.375 Sum_probs=24.5
Q ss_pred CCcC--CCCCCCCCCHHHHHHHHHhhhcCCceeE
Q 047217 290 RGWF--WHASEAPKSAVELLDLYYKSVGRNCLLL 321 (364)
Q Consensus 290 ~~W~--y~~~~~~ks~~~li~~l~~~Vs~nGnlL 321 (364)
.+|+ |......+++++++-.++..+++||.++
T Consensus 248 tgwf~~wGg~~~~R~~e~ia~~va~fls~ggs~v 281 (649)
T KOG0496|consen 248 TGWFTHWGGPHPCRPVEDIALSVARFLSKGGSSV 281 (649)
T ss_pred cchhhhhCCCCCCCCHHHHHHHHHHHHhcCccce
Confidence 3565 3345567899999999999999997554
No 201
>PRK05593 rplR 50S ribosomal protein L18; Reviewed
Probab=30.06 E-value=1.1e+02 Score=25.63 Aligned_cols=43 Identities=30% Similarity=0.463 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL 154 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~ 154 (364)
-...++.++++|..-+||--. ||- | .--|+.|++++|+.||+|
T Consensus 75 G~~la~ra~~~gi~~vvfDrg---~~~---------------y----hGrV~a~a~~are~Gl~f 117 (117)
T PRK05593 75 GKLIAERAKAKGIKQVVFDRG---GYK---------------Y----HGRVKALADAAREAGLKF 117 (117)
T ss_pred HHHHHHHHHHCCCCEEEEcCC---CCc---------------c----cHHHHHHHHHHHHhCCCC
Confidence 456788999999999887532 211 1 235999999999999986
No 202
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=30.02 E-value=1e+02 Score=32.04 Aligned_cols=60 Identities=8% Similarity=0.156 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCC---ccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDY---SVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD 162 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~---~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d 162 (364)
++=++++|++|++..=|..- |+ .+-+- ...| .-.-+--.+|+++|+++||+..+-+.+||
T Consensus 76 ~eDi~Lm~~lG~~aYRfSIs-------Ws-RI~P~G~~~~~N----~~gl~~Y~~lId~L~~~GI~P~VTL~H~d 138 (478)
T PRK09593 76 KEDIALFAEMGFKTYRMSIA-------WT-RIFPKGDELEPN----EAGLQFYEDIFKECHKYGIEPLVTITHFD 138 (478)
T ss_pred HHHHHHHHHcCCCEEEEecc-------hh-hcccCCCCCCCC----HHHHHHHHHHHHHHHHcCCEEEEEecccC
Confidence 45589999999987655443 31 11110 0001 00136678999999999999999888876
No 203
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=30.01 E-value=4.7e+02 Score=28.61 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=67.4
Q ss_pred HHHHHHHHHcCCCEEEEeeee-cCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHH-HHcCCeeEEEeCCCCCC----
Q 047217 91 SQWVHAAKSAGFNRVILTAKH-HDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAA-KEAGVDLGLYLSPWDRH---- 164 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKH-HdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~-rk~Glk~GlYyS~~dw~---- 164 (364)
++.++.+|+.|..-|+|-+-+ .||=.+|+|.|-++ ...|- +-|+.-.++=.. +++|+++-.-+-+.-+.
T Consensus 337 ~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~--~~lp~---r~d~f~~~aw~l~~r~~v~v~AWmp~~~~~~~~~ 411 (671)
T PRK14582 337 DVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN--RLLPM---RADLFNRVAWQLRTRAGVNVYAWMPVLSFDLDPT 411 (671)
T ss_pred HHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc--ccccc---ccCCcCHHHHHHHHhhCCEEEEeccceeeccCCC
Confidence 468889999999999999955 47888899988777 33342 456666655444 46799998876542110
Q ss_pred ----------------CCC-CCC----chhhHHHHHHHHHHHHHccCccceeeecCC
Q 047217 165 ----------------EPS-YGK----TLEYNEFYMAQMAELLTRYGEIKEVWLDGA 200 (364)
Q Consensus 165 ----------------~~~-y~~----~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~ 200 (364)
+|. |.+ .++-.+++..-..||..+| +||++=||..
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~rl~P~~pe~r~~i~~i~~dla~~~-~~dGilf~Dd 467 (671)
T PRK14582 412 LPRVKRLDTGEGKAQIHPEQYRRLSPFDDRVRAQVGMLYEDLAGHA-AFDGILFHDD 467 (671)
T ss_pred cchhhhccccCCccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHhC-CCceEEeccc
Confidence 111 121 1233455556666776555 5788888754
No 204
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=29.93 E-value=37 Score=31.77 Aligned_cols=17 Identities=6% Similarity=0.263 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCCEEEE
Q 047217 91 SQWVHAAKSAGFNRVIL 107 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvl 107 (364)
.+.+++|++.||++||+
T Consensus 87 ~~~i~~A~~lGa~~vv~ 103 (273)
T smart00518 87 IDEIKRCEELGIKALVF 103 (273)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 45789999999999886
No 205
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=29.87 E-value=5.5e+02 Score=25.29 Aligned_cols=78 Identities=19% Similarity=0.124 Sum_probs=47.1
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccceee-ecCCCCCCCcchhhhHHHH
Q 047217 137 GDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVW-LDGAKGEGEKDMEYFFDSW 215 (364)
Q Consensus 137 rDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~W-fDg~~~~~~~~~~~~~~~~ 215 (364)
-|.+.+.++.+|+.|+++.++.+.-..+ -.+++..++++ +..||. +.+- -|...... ..+..++
T Consensus 114 ~~~~~~~i~~ak~~G~~v~~~l~~a~~~---------~~e~l~~~a~~-~~~~Ga-~~i~i~DT~G~~~----P~~v~~~ 178 (337)
T PRK08195 114 ADVSEQHIGLARELGMDTVGFLMMSHMA---------PPEKLAEQAKL-MESYGA-QCVYVVDSAGALL----PEDVRDR 178 (337)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeccCC---------CHHHHHHHHHH-HHhCCC-CEEEeCCCCCCCC----HHHHHHH
Confidence 4789999999999999998887642111 12455555555 457897 5554 46543221 2234556
Q ss_pred HHHHHhh-CCCeEEe
Q 047217 216 FSLIHQL-QPRAVIF 229 (364)
Q Consensus 216 ~~~i~~~-qP~~vi~ 229 (364)
+..+++. .|++-|-
T Consensus 179 v~~l~~~l~~~i~ig 193 (337)
T PRK08195 179 VRALRAALKPDTQVG 193 (337)
T ss_pred HHHHHHhcCCCCeEE
Confidence 6666543 4665554
No 206
>PF15240 Pro-rich: Proline-rich
Probab=29.85 E-value=28 Score=31.35 Aligned_cols=15 Identities=27% Similarity=0.614 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhcCCC
Q 047217 17 ILTLLALYFIPISNS 31 (364)
Q Consensus 17 ~~~~~~~~~~~~~~~ 31 (364)
||+||.+.++++|++
T Consensus 2 LlVLLSvALLALSSA 16 (179)
T PF15240_consen 2 LLVLLSVALLALSSA 16 (179)
T ss_pred hhHHHHHHHHHhhhc
Confidence 444554444444444
No 207
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=29.12 E-value=34 Score=35.64 Aligned_cols=31 Identities=32% Similarity=0.630 Sum_probs=25.3
Q ss_pred CCEEEEeeeecC-CcccCCCCCCCCccccCCC
Q 047217 102 FNRVILTAKHHD-GFCLWPSEYTDYSVKSSEW 132 (364)
Q Consensus 102 akYvvlTaKHHd-GF~lW~S~~t~~~v~~~p~ 132 (364)
|.|||.|+||.| -=.+|.|+.+.|+|..-|+
T Consensus 205 AD~vvVtsKhNdD~QyiWESdan~FsvseDpr 236 (785)
T KOG0020|consen 205 ADRVVVTSKHNDDSQYIWESDANSFSVSEDPR 236 (785)
T ss_pred cceEEEEeccCCccceeeeccCcceeeecCCC
Confidence 689999999985 5569999999998865443
No 208
>PLN02998 beta-glucosidase
Probab=28.71 E-value=83 Score=32.90 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD 162 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d 162 (364)
++=++++|++|++..=+...=-- +.|.-....|-. .-+.-.+++++|+++||+..+-+.+||
T Consensus 85 ~EDi~lmk~lG~~~YRfSIsWsR---I~P~G~g~vN~~-------gl~~Y~~lid~L~~~GIeP~VTL~H~d 146 (497)
T PLN02998 85 KEDVKLMADMGLEAYRFSISWSR---LLPSGRGPINPK-------GLQYYNNLIDELITHGIQPHVTLHHFD 146 (497)
T ss_pred HHHHHHHHHcCCCeEEeeccHHh---cCcCCCCCcCHH-------HHHHHHHHHHHHHHcCCceEEEecCCC
Confidence 34578999999987655433000 112111112211 146678999999999999999998876
No 209
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=28.63 E-value=1.4e+02 Score=27.44 Aligned_cols=64 Identities=16% Similarity=0.098 Sum_probs=40.8
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
.++++.+++.|++.+||------||.+++-....+.... + -..+.+..|.+.+++.++-+.+=+
T Consensus 22 ~~~i~~a~~~ga~liv~PE~~l~g~~~~~~~~~~~~~~~-~---~~~~~~~~l~~~a~~~~i~i~~G~ 85 (258)
T cd07584 22 AELCKEAAAEGADLICFPELATTGYRPDLLGPKLWELSE-P---IDGPTVRLFSELAKELGVYIVCGF 85 (258)
T ss_pred HHHHHHHHHcCCCEEEcccccccCCCccccchhhHhhcc-C---CCCcHHHHHHHHHHHcCeEEEEee
Confidence 456777778899999988776678876432211111111 1 114678889999999987665543
No 210
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=28.61 E-value=3.3e+02 Score=27.24 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHH-HHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHH
Q 047217 137 GDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNE-FYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSW 215 (364)
Q Consensus 137 rDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~-~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~ 215 (364)
++.+.++.+.+++.|.|-.+-.+- -. ..+ =+..++.+.++.-| +...+||+....+. .-..++.
T Consensus 16 ~g~~~~l~~~~~~~g~~~~livt~--~~---------~~~~g~~~~v~~~L~~~~-i~~~~f~~v~~np~---~~~v~~~ 80 (383)
T PRK09860 16 ADSLTDAMNMMADYGFTRTLIVTD--NM---------LTKLGMAGDVQKALEERN-IFSVIYDGTQPNPT---TENVAAG 80 (383)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEcC--cc---------hhhCccHHHHHHHHHHcC-CeEEEeCCCCCCcC---HHHHHHH
Confidence 699999999999999765554431 10 111 13356777776655 46788998654331 2235677
Q ss_pred HHHHHhhCCCeEEe
Q 047217 216 FSLIHQLQPRAVIF 229 (364)
Q Consensus 216 ~~~i~~~qP~~vi~ 229 (364)
.+.+|+.++|+||-
T Consensus 81 ~~~~~~~~~D~Iia 94 (383)
T PRK09860 81 LKLLKENNCDSVIS 94 (383)
T ss_pred HHHHHHcCCCEEEE
Confidence 88899999999984
No 211
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=28.41 E-value=3.3e+02 Score=27.11 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHH-HHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHH
Q 047217 137 GDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEF-YMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSW 215 (364)
Q Consensus 137 rDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~-~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~ 215 (364)
++.+.++.+.+++.|.+-.+-.+- - ...+. +..++++.+++.| +....||+....+ ..-...+.
T Consensus 14 ~g~l~~l~~~l~~~g~~r~lvvt~--~---------~~~~~g~~~~v~~~L~~~~-i~~~~~~~v~~~p---~~~~v~~~ 78 (379)
T TIGR02638 14 AGAIEDIVDEVKRRGFKKALVVTD--K---------DLIKFGVADKVTDLLDEAG-IAYELFDEVKPNP---TITVVKAG 78 (379)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEcC--c---------chhhccchHHHHHHHHHCC-CeEEEECCCCCCc---CHHHHHHH
Confidence 699999999999999755554441 1 01111 4567777777766 3567788654332 11235667
Q ss_pred HHHHHhhCCCeEEe
Q 047217 216 FSLIHQLQPRAVIF 229 (364)
Q Consensus 216 ~~~i~~~qP~~vi~ 229 (364)
.+.+++.++|+||-
T Consensus 79 ~~~~~~~~~D~Iia 92 (379)
T TIGR02638 79 VAAFKASGADYLIA 92 (379)
T ss_pred HHHHHhcCCCEEEE
Confidence 78889999999985
No 212
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=28.34 E-value=2.6e+02 Score=27.69 Aligned_cols=60 Identities=30% Similarity=0.400 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCC-CCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC-CCCC
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYT-DYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD-RHEP 166 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t-~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d-w~~~ 166 (364)
+..-.+++|+.|+.+|=|=. |...+. .++ .-+=|.++++.++++||++-|=||--| |.+|
T Consensus 26 ~~d~~~ilk~~G~N~vRlRv--------wv~P~~~g~~---------~~~~~~~~akrak~~Gm~vlldfHYSD~WaDP 87 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRV--------WVNPYDGGYN---------DLEDVIALAKRAKAAGMKVLLDFHYSDFWADP 87 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE---------SS-TTTTTT---------SHHHHHHHHHHHHHTT-EEEEEE-SSSS--BT
T ss_pred CCCHHHHHHhcCCCeEEEEe--------ccCCcccccC---------CHHHHHHHHHHHHHCCCeEEEeecccCCCCCC
Confidence 56678899999999997754 443333 221 124478999999999999999887544 4444
No 213
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=28.10 E-value=2e+02 Score=25.49 Aligned_cols=47 Identities=26% Similarity=0.406 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
||++.++.+.++|+..+++-.. + .|...+..+.++++|+++|+-.+.
T Consensus 68 d~~~~~~~~~~~g~dgv~vh~~------------------------~-~~~~~~~~~~~~~~~~~~g~~~~~ 114 (211)
T cd00429 68 NPERYIEAFAKAGADIITFHAE------------------------A-TDHLHRTIQLIKELGMKAGVALNP 114 (211)
T ss_pred CHHHHHHHHHHcCCCEEEECcc------------------------c-hhhHHHHHHHHHHCCCeEEEEecC
Confidence 6678899999999988755221 1 145568899999999999997763
No 214
>PLN02635 disproportionating enzyme
Probab=27.68 E-value=1.3e+02 Score=31.98 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=43.8
Q ss_pred cccceEEEEeCCCcCCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHcCCCEEEEeeeecCCc--ccCCCCCCCCc
Q 047217 54 LSSMALFLHFGPNTFTDSEWGTGRADPRVFNPTRLNA--SQWVHAAKSAGFNRVILTAKHHDGF--CLWPSEYTDYS 126 (364)
Q Consensus 54 d~kfGiFiHwG~~s~~~~eW~~~~~~~~~F~p~~fD~--~~Wa~l~k~aGakYvvlTaKHHdGF--~lW~S~~t~~~ 126 (364)
..+-|+.+| ++|+++ .|+-|. |-+ .++++.++++|++|+-+.-=|..|+ ..=+|.|+..|
T Consensus 27 ~R~~Gvll~--l~SLps-~~GIGD----------fg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~~~~SPYs~~S 90 (538)
T PLN02635 27 RRRAGILLH--PTSLPG-PYGIGD----------LGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGGEDGSPYSGQD 90 (538)
T ss_pred CcceEEEEc--cccCCC-CCCCcc----------hHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCccccc
Confidence 456799998 578885 477543 643 4799999999999999888788776 23367766554
No 215
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.26 E-value=1.3e+02 Score=27.76 Aligned_cols=40 Identities=30% Similarity=0.228 Sum_probs=29.3
Q ss_pred CCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 047217 85 PTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL 154 (364)
Q Consensus 85 p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~ 154 (364)
.+..++++ ++.+.++||+|+|. | .-|. |+.++|+++||.+
T Consensus 72 GTVl~~~~-a~~a~~aGA~Fivs-----------------------P----~~~~--~vi~~a~~~~i~~ 111 (212)
T PRK05718 72 GTVLNPEQ-LAQAIEAGAQFIVS-----------------------P----GLTP--PLLKAAQEGPIPL 111 (212)
T ss_pred eeccCHHH-HHHHHHcCCCEEEC-----------------------C----CCCH--HHHHHHHHcCCCE
Confidence 35677765 99999999999872 2 1233 8899999977753
No 216
>COG1683 Uncharacterized conserved protein [Function unknown]
Probab=27.25 E-value=1.5e+02 Score=26.16 Aligned_cols=58 Identities=26% Similarity=0.262 Sum_probs=43.6
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLG 155 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G 155 (364)
+++..+++++++...+||.+| =||--+.+ |...+|.|...|=.|-++.+.+++|+.+-
T Consensus 88 a~~~L~~a~~~~~~~aILk~k-------SPSCG~~~-vydg~f~G~~~~G~Gvtaa~L~e~~~~v~ 145 (156)
T COG1683 88 AERTLALAKEAGIDGAILKEK-------SPSCGSGF-VYDGSFSGKRIAGSGVTAAALMENGIEVP 145 (156)
T ss_pred HHHHHHHhhhcCCcEEEEecC-------CCCCCcee-eEeeccCCccccCccHHHHHHHHhCCccc
Confidence 788999999999999999999 34443433 22223445556778889999999999874
No 217
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=26.86 E-value=2e+02 Score=25.79 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS 159 (364)
.|++++++.++++|+.++.+-.. . .|-..+..+++|+.|+++|+-.+
T Consensus 71 ~d~~~~i~~~~~~g~d~v~vh~~------------------------~-~~~~~~~~~~~~~~~~~~g~~~~ 117 (220)
T PRK05581 71 ENPDRYVPDFAKAGADIITFHVE------------------------A-SEHIHRLLQLIKSAGIKAGLVLN 117 (220)
T ss_pred CCHHHHHHHHHHcCCCEEEEeec------------------------c-chhHHHHHHHHHHcCCEEEEEEC
Confidence 48999999999999999866332 0 13345668999999999999765
No 218
>KOG1773 consensus Stress responsive protein [General function prediction only]
Probab=26.71 E-value=58 Score=24.29 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=15.0
Q ss_pred ccCchhhHHHHHHHHHHH
Q 047217 6 NNCTKPISQNLILTLLAL 23 (364)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ 23 (364)
+.|++++..+++|.+|+.
T Consensus 27 g~C~~~~~InilL~~L~~ 44 (63)
T KOG1773|consen 27 GGCTVDVLINILLTLLGF 44 (63)
T ss_pred CCCchhhHHHHHHHHHHH
Confidence 349999999999988754
No 219
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=26.68 E-value=1.1e+02 Score=31.74 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=39.5
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCC--CccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCC
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTD--YSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWD 162 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~--~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~d 162 (364)
++=++++|++|++-.=+..- |+-=..+ -...+ ...-|.-.+|+++|+++||+..+-+++||
T Consensus 70 ~eDi~Lm~~lG~~~yRfSIs-------WsRI~P~G~~~~~N----~~gl~~Y~~lid~L~~~GI~P~VTL~H~d 132 (476)
T PRK09589 70 KEDIALFAEMGFKCFRTSIA-------WTRIFPQGDELEPN----EEGLQFYDDLFDECLKQGIEPVVTLSHFE 132 (476)
T ss_pred HHHHHHHHHcCCCEEEeccc-------hhhcCcCCCCCCCC----HHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence 45578999999987655433 3211110 00001 01146778999999999999999998876
No 220
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=26.27 E-value=2.9e+02 Score=27.89 Aligned_cols=105 Identities=18% Similarity=0.186 Sum_probs=65.8
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCC-CCCC--CCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCC-
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWP-SEYT--DYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDR- 163 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~-S~~t--~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw- 163 (364)
|..+++....|++|++.|=+. +|.|- +.+. +-.+...+ .. - .|.+.+++++++||++-+=+|....
T Consensus 73 ~~~~~~~~~ik~~G~n~VRiP------i~~~~~~~~~~~~p~~~~~~--~~-~-~ld~~I~~a~~~gi~V~iD~H~~~~~ 142 (407)
T COG2730 73 FITEEDFDQIKSAGFNAVRIP------IGYWALQATDGDNPYLIGLT--QL-K-ILDEAINWAKKLGIYVLIDLHGYPGG 142 (407)
T ss_pred hhhhhHHHHHHHcCCcEEEcc------cchhhhhccCCCCCCeecch--HH-H-HHHHHHHHHHhcCeeEEEEecccCCC
Confidence 668999999999999998664 33333 3222 11222100 11 2 7899999999999999998886431
Q ss_pred -C--C-----CCCCCchhhHHHHHHHHHHHHHccCccceee-ecCCCC
Q 047217 164 -H--E-----PSYGKTLEYNEFYMAQMAELLTRYGEIKEVW-LDGAKG 202 (364)
Q Consensus 164 -~--~-----~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~W-fDg~~~ 202 (364)
. + ..|.......+.+..-.+.+..+|++-+.+= |+-.++
T Consensus 143 ~~~~~~s~~~~~~~~~~~~~~~~~~~w~~ia~~f~~~~~VIg~~~~NE 190 (407)
T COG2730 143 NNGHEHSGYTSDYKEENENVEATIDIWKFIANRFKNYDTVIGFELINE 190 (407)
T ss_pred CCCcCcccccccccccchhHHHHHHHHHHHHHhccCCCceeeeeeecC
Confidence 1 1 1233322445667778888999998744333 554433
No 221
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=26.11 E-value=58 Score=20.95 Aligned_cols=15 Identities=47% Similarity=0.508 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCee
Q 047217 140 VAELALAAKEAGVDL 154 (364)
Q Consensus 140 V~El~~A~rk~Glk~ 154 (364)
|.||.+.|+++||+.
T Consensus 6 v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 6 VAELKEELKERGLST 20 (35)
T ss_dssp HHHHHHHHHHTTS-S
T ss_pred HHHHHHHHHHCCCCC
Confidence 678999999999863
No 222
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=25.85 E-value=1.3e+02 Score=24.77 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 047217 84 NPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLG 155 (364)
Q Consensus 84 ~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G 155 (364)
+....+|.+..+.+-..+|..+|+.=.|-.|-+. ||+. -..+-+.|.+||+.-||++-
T Consensus 42 ~~~~v~~R~i~~~aL~~~A~~vil~HNHPsG~~~-PS~~-------------D~~~T~~l~~~~~~l~i~ll 99 (113)
T cd08071 42 NSSLVHPREIFKEALRHNAAAIILAHNHPSGDPT-PSRE-------------DIELTKRLKEAGELLGIRLL 99 (113)
T ss_pred cceecCHHHHHHHHHHHhhheEEEEeeCCCCCCC-CCHH-------------HHHHHHHHHHHHHHCCCEEe
Confidence 5567899999999999999999999999888663 2211 14677899999999999874
No 223
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=25.81 E-value=1.8e+02 Score=27.08 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCCEEEEeeeecC----CcccCCCCC--CCCcc-----ccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHD----GFCLWPSEY--TDYSV-----KSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHd----GF~lW~S~~--t~~~v-----~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
+++.+.+++...+-||+.+-||. +|++...+. +.|+. ...+. .+.+++..+|++++++ |+.+..
T Consensus 27 ~~~~~~~~~~~pd~iviis~hh~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~d~ela~~l~~~~~~-~~~~~~ 101 (260)
T cd07320 27 IEISKRIKEKRPDTIIVVSPHHLVIISATAITCAETFETADSGQWGRRPVYDV-KGDPDLAWEIAEELIK-EIPVTI 101 (260)
T ss_pred HHHHHHHHHhCCCEEEEEeCCccccCCCEEEeecceeccccccccCCCCCcCC-CCCHHHHHHHHHHHHh-cCCEEE
Confidence 34555556678999999999998 566654332 21211 11122 2346899999999998 988763
No 224
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.64 E-value=87 Score=28.87 Aligned_cols=38 Identities=21% Similarity=0.114 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL 154 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~ 154 (364)
=.++++ ++.+.++||+|+| || -+..|+.++|+++||.+
T Consensus 75 V~~~~~-~~~a~~aGA~Fiv-----------------------sP------~~~~~v~~~~~~~~i~~ 112 (213)
T PRK06552 75 VLDAVT-ARLAILAGAQFIV-----------------------SP------SFNRETAKICNLYQIPY 112 (213)
T ss_pred CCCHHH-HHHHHHcCCCEEE-----------------------CC------CCCHHHHHHHHHcCCCE
Confidence 356666 5889999999998 12 22348899999999865
No 225
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=25.56 E-value=2.8e+02 Score=27.45 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=55.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCC-CccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCC
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTD-YSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSY 168 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~-~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y 168 (364)
++.=++.+|+.||..+=+-.- |+..-.+ -|. -+...|+.+.+.|+++||.|-|=.=.+|-...+
T Consensus 109 ~~ws~~rike~GadavK~Lly-------y~pD~~~ein~-------~k~a~vervg~eC~a~dipf~lE~l~Yd~~~~d- 173 (329)
T PRK04161 109 VEWSVKRLKEAGADAVKFLLY-------YDVDGDEEIND-------QKQAYIERIGSECTAEDIPFFLELLTYDERISD- 173 (329)
T ss_pred chhhHHHHHHhCCCeEEEEEE-------ECCCCCHHHHH-------HHHHHHHHHHHHHHHCCCCeEEEEeccCCcccc-
Confidence 445578889999999877665 4433222 122 147899999999999999999843222211100
Q ss_pred CCchhhH----HHHHHHHHHHHH-ccCc
Q 047217 169 GKTLEYN----EFYMAQMAELLT-RYGE 191 (364)
Q Consensus 169 ~~~~~y~----~~~~~Ql~EL~~-~Yg~ 191 (364)
..+.+|. ..+..-++|+.+ +||-
T Consensus 174 ~~~~eyak~kP~~V~~amkefs~~~~gv 201 (329)
T PRK04161 174 NNSAAYAKLKPHKVNGAMKVFSDKRFGV 201 (329)
T ss_pred cccHHHHhhChHHHHHHHHHhccCCCCC
Confidence 0123444 347778899887 8984
No 226
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=25.51 E-value=5.8e+02 Score=24.16 Aligned_cols=106 Identities=17% Similarity=0.115 Sum_probs=61.7
Q ss_pred CCCCCCC-HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCC
Q 047217 83 FNPTRLN-ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPW 161 (364)
Q Consensus 83 F~p~~fD-~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~ 161 (364)
+.|.-.| -+++++.+.++|++.+-+...=+| -|.+.+.++.+|++|+++.++.+.-
T Consensus 85 ~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~-----------------------~~~~~~~i~~ak~~G~~v~~~i~~~ 141 (275)
T cd07937 85 YRHYPDDVVELFVEKAAKNGIDIFRIFDALND-----------------------VRNLEVAIKAVKKAGKHVEGAICYT 141 (275)
T ss_pred ccCCCcHHHHHHHHHHHHcCCCEEEEeecCCh-----------------------HHHHHHHHHHHHHCCCeEEEEEEec
Confidence 3344455 377889999999988766543222 2668899999999999988877632
Q ss_pred CCCCCCCCCchhhHHHHHHHHHHHHHccCcccee-eecCCCCCCCcchhhhHHHHHHHHHhhCC
Q 047217 162 DRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEV-WLDGAKGEGEKDMEYFFDSWFSLIHQLQP 224 (364)
Q Consensus 162 dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~-WfDg~~~~~~~~~~~~~~~~~~~i~~~qP 224 (364)
+- + ..+ .+++...++++ ..+|. +.+ --|...... .....+++..+++.-|
T Consensus 142 ~~--~--~~~---~~~~~~~~~~~-~~~Ga-~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~ 192 (275)
T cd07937 142 GS--P--VHT---LEYYVKLAKEL-EDMGA-DSICIKDMAGLLT----PYAAYELVKALKKEVG 192 (275)
T ss_pred CC--C--CCC---HHHHHHHHHHH-HHcCC-CEEEEcCCCCCCC----HHHHHHHHHHHHHhCC
Confidence 21 0 011 23444444444 45676 544 346543221 1234555566655434
No 227
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=25.48 E-value=23 Score=35.19 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHhhhcCCceeEEcc-------C--------CCCCCCCCHHHHHHHHHHHHHHHHH
Q 047217 298 EAPKSAVELLDLYYKSVGRNCLLLLNV-------P--------PNSLGLISAEDIQVLQEFSELRKSI 350 (364)
Q Consensus 298 ~~~ks~~~li~~l~~~Vs~nGnlLLNi-------g--------P~~dG~Ip~~~~~~L~eiG~wl~~i 350 (364)
...+.+.++-......+++|...++-- | .+.||+.|-.--+.+.++|+-|++|
T Consensus 307 ~~~~~pg~~~~~~~~~~A~Ga~~i~~~~wr~~~~g~E~~~~g~~~~dg~~~~~~~~e~~~~~~~l~~i 374 (374)
T PF02449_consen 307 NRPPRPGELRLWSWQAIAHGADGILFWQWRQSRFGAEQFHGGLVDHDGREPTRRYREVAQLGRELKKI 374 (374)
T ss_dssp -----TTHHHHHHHHHHHTT-S-EEEC-SB--SSSTTTTS--SB-TTS--B-HHHHHHHHHHHHHHT-
T ss_pred CCCCCCCHHHHHHHHHHHHhCCeeEeeeccCCCCCchhhhcccCCccCCCCCcHHHHHHHHHHHHhcC
Confidence 445667788888889999998776632 1 3457766667677788888888775
No 228
>PRK10259 hypothetical protein; Provisional
Probab=25.46 E-value=85 Score=24.85 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCEEEEeeee
Q 047217 91 SQWVHAAKSAGFNRVILTAKH 111 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKH 111 (364)
++.++.+.++||+|..+++-.
T Consensus 53 ~~La~KAd~~GA~~YrIi~a~ 73 (86)
T PRK10259 53 AKLAEKAAAAGASGYSITSAT 73 (86)
T ss_pred HHHHHHHHHcCCCEEEEEEec
Confidence 578999999999988887753
No 229
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=25.39 E-value=4.3e+02 Score=26.20 Aligned_cols=78 Identities=17% Similarity=0.115 Sum_probs=50.5
Q ss_pred CChHHHHHHHHHHcCCe-eEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHH
Q 047217 137 GDVVAELALAAKEAGVD-LGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSW 215 (364)
Q Consensus 137 rDlV~El~~A~rk~Glk-~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~ 215 (364)
++.+.++.+.+++.|.+ +-+....- -...-...++.+.+.+-| +....||+....+ ..-..++.
T Consensus 11 ~g~l~~l~~~l~~~g~~~~lvvt~~~-----------~~~~g~~~~v~~~L~~~g-~~~~~~~~v~~~p---~~~~v~~~ 75 (374)
T cd08189 11 SGSLAQLPAAISQLGVKKVLIVTDKG-----------LVKLGLLDKVLEALEGAG-IEYAVYDGVPPDP---TIENVEAG 75 (374)
T ss_pred cCHHHHHHHHHHhcCCCeEEEEeCcc-----------hhhcccHHHHHHHHHhcC-CeEEEeCCCCCCc---CHHHHHHH
Confidence 68999999999999964 44443320 011113456777776655 3567788754332 12235677
Q ss_pred HHHHHhhCCCeEEe
Q 047217 216 FSLIHQLQPRAVIF 229 (364)
Q Consensus 216 ~~~i~~~qP~~vi~ 229 (364)
.+.+++.++|+||-
T Consensus 76 ~~~~~~~~~d~IIa 89 (374)
T cd08189 76 LALYRENGCDAILA 89 (374)
T ss_pred HHHHHhcCCCEEEE
Confidence 88899999999985
No 230
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=25.36 E-value=5e+02 Score=25.08 Aligned_cols=102 Identities=15% Similarity=0.141 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHc-CCeeEEEeCCCCCCCC
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEA-GVDLGLYLSPWDRHEP 166 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~-Glk~GlYyS~~dw~~~ 166 (364)
-++-++++.++++||..+++++=+ +... ....|+.=+.+-|++- +|.+.+|.-+..-
T Consensus 90 ~~ai~~a~~A~~~Gad~vlv~~P~----------y~~~---------~~~~l~~yf~~va~a~~~lPv~iYn~P~~t--- 147 (309)
T cd00952 90 RDTIARTRALLDLGADGTMLGRPM----------WLPL---------DVDTAVQFYRDVAEAVPEMAIAIYANPEAF--- 147 (309)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCc----------CCCC---------CHHHHHHHHHHHHHhCCCCcEEEEcCchhc---
Confidence 467789999999999999998754 1110 1134444444445556 6999999765211
Q ss_pred CCCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeEEec
Q 047217 167 SYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFS 230 (364)
Q Consensus 167 ~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~ 230 (364)
+ .++-.+.+.+|. +...|..+ |... +..++.+.++..+|+..|+.
T Consensus 148 --g-----~~l~~~~l~~L~-~~pnivgi----------Kdss-d~~~~~~~i~~~~~~~~v~~ 192 (309)
T cd00952 148 --K-----FDFPRAAWAELA-QIPQVVAA----------KYLG-DIGALLSDLAAVKGRMRLLP 192 (309)
T ss_pred --C-----CCCCHHHHHHHh-cCCCEEEE----------EecC-ChHHHHHHHHHcCCCeEEee
Confidence 1 112345677776 55554333 1122 45566666777778877763
No 231
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=25.35 E-value=1.1e+02 Score=29.58 Aligned_cols=88 Identities=20% Similarity=0.219 Sum_probs=53.9
Q ss_pred CCCCHHHHHHHHHHcCC-----CEEEEeeeecC--CcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 86 TRLNASQWVHAAKSAGF-----NRVILTAKHHD--GFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 86 ~~fD~~~Wa~l~k~aGa-----kYvvlTaKHHd--GF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
-++||++..+.+.+.|. +.|.++--|.. |-. |+ .+=++++.+.||++||++-+==
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~--------~s----------~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTV--------YS----------LEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---------------------HHHHHHHHHHHHHHT-EEEEEE
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCee--------CC----------HHHHHHHHHHHHhCceEEEEeh
Confidence 57999999999999887 66777655543 422 11 3558999999999998874422
Q ss_pred CCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCC
Q 047217 159 SPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEG 204 (364)
Q Consensus 159 S~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~ 204 (364)
+.. |+. ......-++|+. . -.|.++|-+.++..
T Consensus 166 ARl-~~a---------~~~~~~~~~e~~-~--~~D~v~~~~tK~~g 198 (290)
T PF01212_consen 166 ARL-ANA---------AAALGVSLAEIA-A--GADSVSFGGTKNGG 198 (290)
T ss_dssp TTH-HHH---------HCHHHHHHHHHH-T--TSSEEEEETTSTT-
T ss_pred hhH-HHh---------hhcccccHHHHh-h--hCCEEEEEEEcccc
Confidence 210 000 012334467777 2 25889998876543
No 232
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=25.25 E-value=4.3e+02 Score=26.45 Aligned_cols=109 Identities=27% Similarity=0.396 Sum_probs=64.5
Q ss_pred CCCCCCCHHHH----------HHHHHHcCCCEEEEeeeecCCccc--CCCCCCCCccccCCCCCC---CCChHHHHHHHH
Q 047217 83 FNPTRLNASQW----------VHAAKSAGFNRVILTAKHHDGFCL--WPSEYTDYSVKSSEWKNG---TGDVVAELALAA 147 (364)
Q Consensus 83 F~p~~fD~~~W----------a~l~k~aGakYvvlTaKHHdGF~l--W~S~~t~~~v~~~p~~g~---krDlV~El~~A~ 147 (364)
..|...+-++. |+.|++||+.-|=+-+-|. |-+ +=|+.++--.+ .|.|. +-=++.|+++|+
T Consensus 134 ~~pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhG--YLi~qFlsp~tN~RtD--~YGGSlENR~Rf~~EVv~aV 209 (363)
T COG1902 134 ATPRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHG--YLLSQFLSPLTNKRTD--EYGGSLENRARFLLEVVDAV 209 (363)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccc--hHHHHhcCCccCCCCC--ccCCcHHHHHHHHHHHHHHH
Confidence 35666766655 4568899999999998885 332 11222221111 12111 234889999999
Q ss_pred HHc-C--CeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccceeeecCC
Q 047217 148 KEA-G--VDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGA 200 (364)
Q Consensus 148 rk~-G--lk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~ 200 (364)
|+. | ..+|+=+|+.|+.+. .+.+. .+ ..++.+.+.+.|.++.+..-++
T Consensus 210 r~~vg~~~~vg~Rls~~d~~~~-~g~~~--~e--~~~la~~L~~~G~~d~i~vs~~ 260 (363)
T COG1902 210 REAVGADFPVGVRLSPDDFFDG-GGLTI--EE--AVELAKALEEAGLVDYIHVSEG 260 (363)
T ss_pred HHHhCCCceEEEEECccccCCC-CCCCH--HH--HHHHHHHHHhcCCccEEEeecc
Confidence 996 4 458889999888222 12221 11 1234555566776677777654
No 233
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=25.15 E-value=3.9e+02 Score=26.33 Aligned_cols=82 Identities=13% Similarity=0.223 Sum_probs=0.0
Q ss_pred EEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC-----CCCCCCCCCCc---hhhHH
Q 047217 105 VILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP-----WDRHEPSYGKT---LEYNE 176 (364)
Q Consensus 105 vvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~-----~dw~~~~y~~~---~~y~~ 176 (364)
+++=-.|+++++.|.-....| -|+ +++++..++.|+|+.+-..+ ..|..+..-.| ++-.+
T Consensus 43 i~lDidy~~~~~~Ft~d~~~F-----------Pdp-~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~ 110 (332)
T cd06601 43 LHVDVDFQDNYRTFTTNGGGF-----------PNP-KEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVRE 110 (332)
T ss_pred EEEcCchhcCCCceeecCCCC-----------CCH-HHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHH
Q ss_pred HHHHHHHHHHHccCccceeeecCC
Q 047217 177 FYMAQMAELLTRYGEIKEVWLDGA 200 (364)
Q Consensus 177 ~~~~Ql~EL~~~Yg~i~~~WfDg~ 200 (364)
++..+++.|.+. -|+.+|.|+.
T Consensus 111 wW~~~~~~l~~~--Gv~~~W~Dmn 132 (332)
T cd06601 111 WWGNQYKYLFDI--GLEFVWQDMT 132 (332)
T ss_pred HHHHHHHHHHhC--CCceeecCCC
No 234
>TIGR03356 BGL beta-galactosidase.
Probab=24.88 E-value=1.4e+02 Score=30.42 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC---C--
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRH---E-- 165 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~---~-- 165 (364)
++=++++|++|++.+=+...-+- +.|.-...+|-. .-+...+++++|+++||++.+-++++|-- .
T Consensus 57 ~eDi~l~~~~G~~~~R~si~Wsr---i~p~g~~~~n~~-------~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~ 126 (427)
T TIGR03356 57 EEDVALMKELGVDAYRFSIAWPR---IFPEGTGPVNPK-------GLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDR 126 (427)
T ss_pred HHHHHHHHHcCCCeEEcccchhh---cccCCCCCcCHH-------HHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhc
Confidence 35578999999988766554221 111100112111 13678899999999999999999886621 1
Q ss_pred CCCCCchhhHHHHHHHHHHHHHccCc
Q 047217 166 PSYGKTLEYNEFYMAQMAELLTRYGE 191 (364)
Q Consensus 166 ~~y~~~~~y~~~~~~Ql~EL~~~Yg~ 191 (364)
..+.+ .+..+.+..=.+.+.++||+
T Consensus 127 gGw~~-~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 127 GGWLN-RDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred CCCCC-hHHHHHHHHHHHHHHHHhCC
Confidence 11222 34445555555666777776
No 235
>PRK09929 hypothetical protein; Provisional
Probab=24.87 E-value=98 Score=24.79 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeee
Q 047217 90 ASQWVHAAKSAGFNRVILTAKH 111 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKH 111 (364)
-++.++.+.++||+|.++|+-.
T Consensus 55 ~~~La~KAd~~GA~yY~Ii~a~ 76 (91)
T PRK09929 55 KEDLIKKADEKGADVLVLTSGQ 76 (91)
T ss_pred HHHHHHHHHHcCCCEEEEEecC
Confidence 3678999999999999998843
No 236
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=24.72 E-value=1.6e+02 Score=27.56 Aligned_cols=32 Identities=28% Similarity=0.568 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEeeeecCCc
Q 047217 84 NPTRLNASQWVHAAKSAGFNRVILTAKHHDGF 115 (364)
Q Consensus 84 ~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF 115 (364)
..+..++.++++.+.++|+..+++|.-+-+|.
T Consensus 151 ~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~ 182 (254)
T TIGR00735 151 ESTGLDAVEWAKEVEKLGAGEILLTSMDKDGT 182 (254)
T ss_pred ccCCCCHHHHHHHHHHcCCCEEEEeCcCcccC
Confidence 34678999999999999999999998766665
No 237
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=24.54 E-value=4.4e+02 Score=23.95 Aligned_cols=70 Identities=14% Similarity=0.176 Sum_probs=43.2
Q ss_pred HHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchh
Q 047217 94 VHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLE 173 (364)
Q Consensus 94 a~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~ 173 (364)
++++.++||.|+-|. .++. |+..|. .+..+++++++...--++|++...
T Consensus 14 a~~~~~~GaD~iGfI--------f~~~--SpR~V~--------~~~a~~i~~~~~~~~~~VgVf~~~------------- 62 (207)
T PRK13958 14 VTAASQLPIDAIGFI--------HYEK--SKRHQT--------ITQIKKLASAVPNHIDKVCVVVNP------------- 62 (207)
T ss_pred HHHHHHcCCCEEEEe--------cCCC--CcccCC--------HHHHHHHHHhCCCCCCEEEEEeCC-------------
Confidence 678899999999774 2332 333232 466778887776444478888763
Q ss_pred hHHHHHHHHHHHHHccCccceeeecC
Q 047217 174 YNEFYMAQMAELLTRYGEIKEVWLDG 199 (364)
Q Consensus 174 y~~~~~~Ql~EL~~~Yg~i~~~WfDg 199 (364)
-...+.|++++++. +.+-+-|
T Consensus 63 ----~~~~i~~~~~~~~~-d~vQLHG 83 (207)
T PRK13958 63 ----DLTTIEHILSNTSI-NTIQLHG 83 (207)
T ss_pred ----CHHHHHHHHHhCCC-CEEEECC
Confidence 11345556666665 6666655
No 238
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=24.53 E-value=1.4e+02 Score=30.65 Aligned_cols=95 Identities=16% Similarity=0.253 Sum_probs=50.5
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcc-cCCCC-CCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCC---CC
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFC-LWPSE-YTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDR---HE 165 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~-lW~S~-~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw---~~ 165 (364)
++=++++|++|++..=+... ++ +.|+- ....|-. .-+--.+++++|+++||++.+-+++||- -+
T Consensus 61 ~eDi~l~~~lg~~~yRfsi~----W~Ri~P~g~~g~~n~~-------~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~ 129 (455)
T PF00232_consen 61 KEDIALMKELGVNAYRFSIS----WSRIFPDGFEGKVNEE-------GLDFYRDLIDELLENGIEPIVTLYHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHT-SEEEEE------HHHHSTTSSSSSS-HH-------HHHHHHHHHHHHHHTT-EEEEEEESS--BHHHH
T ss_pred hHHHHHHHhhccceeeeecc----hhheeecccccccCHh-------HhhhhHHHHHHHHhhccceeeeeeeccccccee
Confidence 34478999999998776554 00 12332 1122211 1355779999999999999999987652 11
Q ss_pred --CCCCCchhhHHHHHHHHHHHHHccCccceeee
Q 047217 166 --PSYGKTLEYNEFYMAQMAELLTRYGEIKEVWL 197 (364)
Q Consensus 166 --~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~Wf 197 (364)
..|.+ .+..+.+..=.+-+.++||+..-+|+
T Consensus 130 ~~ggw~~-~~~~~~F~~Ya~~~~~~~gd~V~~w~ 162 (455)
T PF00232_consen 130 DYGGWLN-RETVDWFARYAEFVFERFGDRVKYWI 162 (455)
T ss_dssp HHTGGGS-THHHHHHHHHHHHHHHHHTTTBSEEE
T ss_pred ecccccC-HHHHHHHHHHHHHHHHHhCCCcceEE
Confidence 11111 23334444444555666666444554
No 239
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=24.30 E-value=1.6e+02 Score=33.22 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
...|++.++.|++.|++.+.+| |++.. .=+-++.++|++.||++.+
T Consensus 18 ~~~~~elv~~A~~~G~~aiAiT---------------Dh~~~---------~g~~~f~~~~~~~gik~I~ 63 (874)
T PRK09532 18 ASQLPALVDRAIELGMPAIALT---------------DHGVM---------YGAIELLKVCRNKGIKPII 63 (874)
T ss_pred cCCHHHHHHHHHHCCCCEEEEe---------------cCCCh---------hhHHHHHHHHHHcCCeEEE
Confidence 3689999999999999988875 33222 1145899999999998765
No 240
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=24.12 E-value=84 Score=31.73 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=37.7
Q ss_pred HHHHHH-HHHHcCCCEEEEeeeecCCcccCCCCCCCCcc--ccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 90 ASQWVH-AAKSAGFNRVILTAKHHDGFCLWPSEYTDYSV--KSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 90 ~~~Wa~-l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v--~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
+++.|+ -.+++|.+||++- .+|--..-+... +..|-+-|.| ++.|++=.+..|||||+|-..
T Consensus 66 ad~mvseG~~~vGY~yi~iD-------DCW~e~~Rd~~grLva~~~rFP~G--i~~ladyvHs~GLKlGiYsD~ 130 (414)
T KOG2366|consen 66 ADAMVSEGLADVGYEYINID-------DCWSEVTRDSDGRLVADPSRFPSG--IKALADYVHSKGLKLGIYSDA 130 (414)
T ss_pred HHHHHHhHHHhcCcEEEech-------hhhhhhccCCccccccChhhcccc--hhhhhhchhhcCCceeeeecc
Confidence 344443 3578899999874 344333222211 1111122333 779999999999999999864
No 241
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=24.07 E-value=4.4e+02 Score=24.00 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=44.2
Q ss_pred HHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchh
Q 047217 94 VHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLE 173 (364)
Q Consensus 94 a~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~ 173 (364)
++.+.++||.|+-|. +++. |+..|. .+.++++.++++..--++|++...
T Consensus 16 a~~~~~~Gad~iGfI--------~~~~--S~R~V~--------~~~a~~i~~~~~~~i~~VgVf~~~------------- 64 (210)
T PRK01222 16 AEAAAELGADAIGFV--------FYPK--SPRYVS--------PEQAAELAAALPPFVKVVGVFVNA------------- 64 (210)
T ss_pred HHHHHHcCCCEEEEc--------cCCC--CCCcCC--------HHHHHHHHHhCCCCCCEEEEEeCC-------------
Confidence 678889999999773 2221 222221 355777777766555688888774
Q ss_pred hHHHHHHHHHHHHHccCccceeeecCC
Q 047217 174 YNEFYMAQMAELLTRYGEIKEVWLDGA 200 (364)
Q Consensus 174 y~~~~~~Ql~EL~~~Yg~i~~~WfDg~ 200 (364)
-...+.+++++++. +.+-+-|.
T Consensus 65 ----~~~~i~~~~~~~~~-d~vQLHg~ 86 (210)
T PRK01222 65 ----SDEEIDEIVETVPL-DLLQLHGD 86 (210)
T ss_pred ----CHHHHHHHHHhcCC-CEEEECCC
Confidence 12345666666665 66766653
No 242
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=24.04 E-value=1.5e+02 Score=32.54 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=65.0
Q ss_pred HHHHHHcCCCEEEEeeeec--CCccc--CCCCCCC-Ccccc--CC---C-CCC----CCChHHHHHHHHHHcCCeeEE--
Q 047217 94 VHAAKSAGFNRVILTAKHH--DGFCL--WPSEYTD-YSVKS--SE---W-KNG----TGDVVAELALAAKEAGVDLGL-- 156 (364)
Q Consensus 94 a~l~k~aGakYvvlTaKHH--dGF~l--W~S~~t~-~~v~~--~p---~-~g~----krDlV~El~~A~rk~Glk~Gl-- 156 (364)
.+-+|+.|..+|=|.--|+ +.--+ +...+.+ ||..+ +| | .+| ...=+|.|++|++|+||.|.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEEE
Confidence 8889999999986654443 33223 1111111 22211 01 1 011 123467889999999999987
Q ss_pred -EeCCCC-------------------CCCCC--C------CCc-----hhhHHHHHHHHHHHHHccCccceeeecCCCCC
Q 047217 157 -YLSPWD-------------------RHEPS--Y------GKT-----LEYNEFYMAQMAELLTRYGEIKEVWLDGAKGE 203 (364)
Q Consensus 157 -YyS~~d-------------------w~~~~--y------~~~-----~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~ 203 (364)
|-|.++ |+++. | |++ +-..+++..-|+-..+.|+ ||++-||-....
T Consensus 286 VfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~h-VDGFRFDLa~~l 364 (697)
T COG1523 286 VFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYH-VDGFRFDLAGVL 364 (697)
T ss_pred eccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHHhC-CCceeecchhhc
Confidence 545432 11121 1 111 2445788899999999998 699999966544
Q ss_pred C
Q 047217 204 G 204 (364)
Q Consensus 204 ~ 204 (364)
+
T Consensus 365 ~ 365 (697)
T COG1523 365 G 365 (697)
T ss_pred c
Confidence 3
No 243
>PTZ00413 lipoate synthase; Provisional
Probab=23.90 E-value=1.6e+02 Score=29.91 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=22.2
Q ss_pred CCCCCCHHHHHHHH---HHcCCCEEEEeeeec
Q 047217 84 NPTRLNASQWVHAA---KSAGFNRVILTAKHH 112 (364)
Q Consensus 84 ~p~~fD~~~Wa~l~---k~aGakYvvlTaKHH 112 (364)
.|...||++-++.| +++|++|+|+|+--.
T Consensus 173 ~p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~R 204 (398)
T PTZ00413 173 KPPPLDPNEPEKVAKAVAEMGVDYIVMTMVDR 204 (398)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEEEcC
Confidence 36778888776655 568999999999843
No 244
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=23.89 E-value=1.5e+02 Score=30.07 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=18.5
Q ss_pred CCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 130 SEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 130 ~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
.| .|..|| .|..+||.++||-+-+
T Consensus 359 QP-GGSiRD--~evI~aane~giaMvf 382 (390)
T PRK07106 359 QP-GGSIRD--DNVIETCNKYGMTMAF 382 (390)
T ss_pred CC-CCCCCc--HHHHHHHHHhCCEEEE
Confidence 45 356788 6999999999987643
No 245
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=23.80 E-value=4.1e+02 Score=25.66 Aligned_cols=153 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCC-eeEEEeCCCCCCCCCCCC
Q 047217 92 QWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGV-DLGLYLSPWDRHEPSYGK 170 (364)
Q Consensus 92 ~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Gl-k~GlYyS~~dw~~~~y~~ 170 (364)
++++.+.++|+..+.+.- ..+-.+=|..+-.|.... .+++.++++++|. ++.+....
T Consensus 186 ~~~~~~~~~G~d~i~~~d--~~~~~isp~~f~e~~~P~----------~k~i~~~i~~~g~~~~~lH~cG---------- 243 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFD--SSGSLISPEMFEEFILPY----------LKKIIDAIKEAGKDPVILHICG---------- 243 (343)
T ss_dssp HHHHHHHHTT-SEEEEEE--TTGGGS-HHHHHHHTHHH----------HHHHHHHHHHHETE-EEEEETT----------
T ss_pred HHHHHHHHhCCCcccccc--cccCCCCHHHHHHHHHHH----------HHHHHHHHHHhCCCceEEEECC----------
Q ss_pred chhhHHHHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeEEecCCCC-CcccccCCCCCCCcc
Q 047217 171 TLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVIFSDVGP-DTRWIGDEAGVAGST 249 (364)
Q Consensus 171 ~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi~~~~g~-~~~w~g~e~g~~~~~ 249 (364)
....+-+.+.++| ++.+=+|.. ..+.+..+++.+++++.++.-+ ..-. ++..
T Consensus 244 -------~~~~~~~~l~~~g-~d~~~~~~~------------~~~~~~~~~~~~~~~l~Gni~~~~~l~-gt~e------ 296 (343)
T PF01208_consen 244 -------NTTPILDDLADLG-ADVLSVDEK------------VDLAEAKRKLGDKIVLMGNIDPVSLLF-GTPE------ 296 (343)
T ss_dssp -------HG-GGHHHHHTSS--SEEEE-TT------------S-HHHHHHHHTTSSEEEEEB-G-GGGG-S-HH------
T ss_pred -------chHHHHHHHHhcC-CCEEEEcCC------------CCHHHHHHHhCCCeEEECCCCcccccc-CCHH------
Q ss_pred ccccccCCCCccCCCCCCCCCCCCCCCCCCcccceeeecCCCcCCCCCCCCCCHHHHHHHHHh-hhcCCceeEEccCCCC
Q 047217 250 CWSLFNRSDAKIGGTDPRYSQGGDPHGHDWVPAECDVSIRRGWFWHASEAPKSAVELLDLYYK-SVGRNCLLLLNVPPNS 328 (364)
Q Consensus 250 ~~~~~n~~~~~~g~~~~~~~~~g~~~~~~w~P~e~~~~i~~~W~y~~~~~~ks~~~li~~l~~-~Vs~nGnlLLNigP~~ 328 (364)
..++-+..+++ .++.+|.++|+.|=.=
T Consensus 297 ----------------------------------------------------ei~~~v~~~i~~~~~~~~gfIl~~gc~i 324 (343)
T PF01208_consen 297 ----------------------------------------------------EIEEEVKRLIEEGLAGGGGFILSPGCGI 324 (343)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHTHCTSSSEEBEBSS--
T ss_pred ----------------------------------------------------HHHHHHHHHHHHhcCCCCCEEEeCCCcC
Q ss_pred CCCCCHHHHHHHHHHHH
Q 047217 329 LGLISAEDIQVLQEFSE 345 (364)
Q Consensus 329 dG~Ip~~~~~~L~eiG~ 345 (364)
--..|++-++.+-+..+
T Consensus 325 p~~~p~eni~a~~~a~~ 341 (343)
T PF01208_consen 325 PPDTPPENIKAMVEAVK 341 (343)
T ss_dssp -TTS-HHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
No 246
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=23.79 E-value=4.5e+02 Score=24.33 Aligned_cols=58 Identities=12% Similarity=0.078 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCeeEEEeCCCCCCCC-CCCCchhhHHHHHHHHHHHHHccCccceeeec
Q 047217 140 VAELALAAKEAGVDLGLYLSPWDRHEP-SYGKTLEYNEFYMAQMAELLTRYGEIKEVWLD 198 (364)
Q Consensus 140 V~El~~A~rk~Glk~GlYyS~~dw~~~-~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfD 198 (364)
+..+.++||++|+|+-+-...+..... .-..++...+-+..++.+++.+||= |++=+|
T Consensus 48 ~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv~~~~~~~~-DGIdiD 106 (253)
T cd06545 48 LNSVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKIINYVVSYNL-DGIDVD 106 (253)
T ss_pred HHHHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHHHHHHHhCC-CceeEE
Confidence 567889999999999998775432210 0112334556667888899999983 555444
No 247
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=23.77 E-value=1.3e+02 Score=30.33 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
.|++++-++.|++.|..+. .-++-.+||-.- --.|||.-|..+|++.|+++-+
T Consensus 53 ~f~~~d~~~fF~~~Gi~~~-----~e~~grvfP~S~------------~A~sVv~~L~~~l~~~gV~i~~ 105 (376)
T TIGR03862 53 AFDAVALQDWARGLGIETF-----VGSSGRVFPVEM------------KAAPLLRAWLKRLAEQGVQFHT 105 (376)
T ss_pred hCCHHHHHHHHHHCCCceE-----ECCCCEECCCCC------------CHHHHHHHHHHHHHHCCCEEEe
Confidence 7999999999999998633 334446777311 1169999999999999998764
No 248
>cd06417 GH25_LysA-like LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.
Probab=23.76 E-value=1.1e+02 Score=27.38 Aligned_cols=72 Identities=19% Similarity=0.327 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHHHHHHHHHHHHHccCccceeeecCCCCCCC-cchhhhHHHHHHH
Q 047217 140 VAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLDGAKGEGE-KDMEYFFDSWFSL 218 (364)
Q Consensus 140 V~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~-~~~~~~~~~~~~~ 218 (364)
..+-.++|++.||++|+|+=. .+ .+...-.+++.+.++... ++ ..+++|-...... ....-...++++.
T Consensus 38 f~~n~~~A~~aGl~~G~Yhf~----~~--~~a~~qA~~f~~~~~~~~---~~-~~~~lD~E~~~~~~~~~~~~~~~f~~~ 107 (195)
T cd06417 38 WRSQAAQAIAAGKLLGLYHYA----NG--GNAIAEADYFLNNIKGYV---GK-AVLVLDWESYQNSAWGNSAWARQWVNR 107 (195)
T ss_pred HHHHHHHHHHcCCceEEEEEC----CC--CCHHHHHHHHHHHhcccc---CC-CcEEEEeeCCCCCchHHHHHHHHHHHH
Confidence 556789999999999999732 11 222234566666665432 22 3578885322211 1111224556666
Q ss_pred HHh
Q 047217 219 IHQ 221 (364)
Q Consensus 219 i~~ 221 (364)
|++
T Consensus 108 v~~ 110 (195)
T cd06417 108 VHE 110 (195)
T ss_pred HHH
Confidence 654
No 249
>PRK13358 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=23.56 E-value=1.8e+02 Score=27.54 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCCEEEEeeeecC---------Cccc----CCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEE
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHD---------GFCL----WPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLY 157 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHd---------GF~l----W~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlY 157 (364)
+++.+.+++..-+.||+.+-||. +|++ |++.+.++-+....+. +..++..++.+.+++.|+.....
T Consensus 32 ~~~~~~l~~~~Pd~iViis~~h~~~~~~~~~~~~~i~~~~~~~p~gd~g~~~~~~~-g~~~LA~~l~~~~~~~~~~~a~~ 110 (269)
T PRK13358 32 REIGRRLRELRPDVLVVIGSDHLFNFNTGCQPPFLVGTGDSDTPYGDMDIPRELVP-GHRAFAQAIALHRAADGFDLAQA 110 (269)
T ss_pred HHHHHHHHHcCCCEEEEEeCchhhhcccccCCCeEEEecCCCCCccccCCCcccCC-CCHHHHHHHHHHHHHcCCCeeec
Confidence 34566666677899999999997 5654 2222233322221122 33578999999999999877644
No 250
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.37 E-value=1e+02 Score=28.21 Aligned_cols=38 Identities=37% Similarity=0.399 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL 154 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~ 154 (364)
=.|+++ ++.+.++||+|+| || -+..|+.++|+++||.+
T Consensus 63 Vl~~e~-a~~ai~aGA~Fiv-----------------------SP------~~~~~vi~~a~~~~i~~ 100 (201)
T PRK06015 63 ILNAKQ-FEDAAKAGSRFIV-----------------------SP------GTTQELLAAANDSDVPL 100 (201)
T ss_pred CcCHHH-HHHHHHcCCCEEE-----------------------CC------CCCHHHHHHHHHcCCCE
Confidence 466766 5889999999997 22 12358999999999864
No 251
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=23.30 E-value=1.9e+02 Score=29.96 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=55.8
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCC-CCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC---CC
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYT-DYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRH---EP 166 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t-~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~---~~ 166 (364)
++=++|+|++|.|-.=+...=- -++|.... ..|-. .-+.-.+|.++|.|+||.+-+-+++||-- ..
T Consensus 62 keDi~L~~emG~~~~R~SI~Ws---RIfP~g~~~e~N~~-------gl~fY~~l~del~~~gIep~vTL~Hfd~P~~L~~ 131 (460)
T COG2723 62 KEDIALAKEMGLNAFRTSIEWS---RIFPNGDGGEVNEK-------GLRFYDRLFDELKARGIEPFVTLYHFDLPLWLQK 131 (460)
T ss_pred HHHHHHHHHcCCCEEEeeeeEE---EeecCCCCCCcCHH-------HHHHHHHHHHHHHHcCCEEEEEecccCCcHHHhh
Confidence 5668999999999776654410 02232222 22221 14677899999999999999999998731 22
Q ss_pred CCCC--chhhHHHHHHHHHHHHHccCccceeee
Q 047217 167 SYGK--TLEYNEFYMAQMAELLTRYGEIKEVWL 197 (364)
Q Consensus 167 ~y~~--~~~y~~~~~~Ql~EL~~~Yg~i~~~Wf 197 (364)
.||. ..+-.+++..=.+-+.++||+.--.|+
T Consensus 132 ~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk~W~ 164 (460)
T COG2723 132 PYGGWENRETVDAFARYAATVFERFGDKVKYWF 164 (460)
T ss_pred ccCCccCHHHHHHHHHHHHHHHHHhcCcceEEE
Confidence 2321 112223333334455666665334444
No 252
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=23.25 E-value=4.8e+02 Score=25.94 Aligned_cols=79 Identities=14% Similarity=0.029 Sum_probs=52.8
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHH-HHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHH
Q 047217 137 GDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNE-FYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSW 215 (364)
Q Consensus 137 rDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~-~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~ 215 (364)
++.+.++.+.+++.|=|+-+=...-. +.. =+..++.+.+++.|- ...+||+....+ ......+.
T Consensus 14 ~g~~~~l~~~~~~~~~r~livt~~~~-----------~~~~~~~~~v~~~L~~~g~-~~~~~~~v~~~p---~~~~v~~~ 78 (382)
T cd08187 14 KGTESELGKELKKYGKKVLLVYGGGS-----------IKKNGLYDRVIASLKEAGI-EVVELGGVEPNP---RLETVREG 78 (382)
T ss_pred CCHHHHHHHHHHHhCCEEEEEeCCcH-----------HHhcCcHHHHHHHHHHcCC-eEEEECCccCCC---CHHHHHHH
Confidence 68899999999998866665544211 111 134678888877663 677898764432 12235667
Q ss_pred HHHHHhhCCCeEEec
Q 047217 216 FSLIHQLQPRAVIFS 230 (364)
Q Consensus 216 ~~~i~~~qP~~vi~~ 230 (364)
.+..++.++|+||--
T Consensus 79 ~~~~~~~~~D~IIai 93 (382)
T cd08187 79 IELCKEEKVDFILAV 93 (382)
T ss_pred HHHHHHcCCCEEEEe
Confidence 788899999999853
No 253
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=23.12 E-value=1.6e+02 Score=27.09 Aligned_cols=49 Identities=18% Similarity=0.117 Sum_probs=37.0
Q ss_pred CCHHHHHH-HHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 88 LNASQWVH-AAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 88 fD~~~Wa~-l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
.|+..++. ++.++||.++.+-+. +..+-+.+..++++++|+++|+-.-.
T Consensus 66 ~Di~~~v~~~~~~~Gad~vTvH~~------------------------a~~~~i~~~~~~~~~~g~~~~V~llt 115 (216)
T PRK13306 66 ADAGKILAKMAFEAGADWVTVICA------------------------AHIPTIKAALKVAKEFNGEIQIELYG 115 (216)
T ss_pred cCCcHHHHHHHHHCCCCEEEEeCC------------------------CCHHHHHHHHHHHHHcCCEEEEEECC
Confidence 56667766 788999999876432 12466889999999999998887754
No 254
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=23.09 E-value=5.1e+02 Score=24.14 Aligned_cols=111 Identities=13% Similarity=0.052 Sum_probs=57.5
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCCCCC
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHEPSY 168 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y 168 (364)
+++. ++.+.++|++.+-+...-.|-+.- .+...++ .--.|-+.+.++.||+.|+.+.+.......+
T Consensus 71 ~~~~-v~~a~~~g~~~i~i~~~~s~~~~~-------~~~~~~~--~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~---- 136 (259)
T cd07939 71 VKED-IEAALRCGVTAVHISIPVSDIHLA-------HKLGKDR--AWVLDQLRRLVGRAKDRGLFVSVGAEDASRA---- 136 (259)
T ss_pred CHHH-HHHHHhCCcCEEEEEEecCHHHHH-------HHhCCCH--HHHHHHHHHHHHHHHHCCCeEEEeeccCCCC----
Confidence 4444 577889999988887632211110 0111110 0003567789999999999876544311111
Q ss_pred CCchhhHHHHHHHHHHHHHccCccceee-ecCCCCCCCcchhhhHHHHHHHHHhhCC
Q 047217 169 GKTLEYNEFYMAQMAELLTRYGEIKEVW-LDGAKGEGEKDMEYFFDSWFSLIHQLQP 224 (364)
Q Consensus 169 ~~~~~y~~~~~~Ql~EL~~~Yg~i~~~W-fDg~~~~~~~~~~~~~~~~~~~i~~~qP 224 (364)
+ .+++...++++. .+|. +.+- -|...... .....++...+++.-|
T Consensus 137 --~---~~~~~~~~~~~~-~~G~-~~i~l~DT~G~~~----P~~v~~lv~~l~~~~~ 182 (259)
T cd07939 137 --D---PDFLIEFAEVAQ-EAGA-DRLRFADTVGILD----PFTTYELIRRLRAATD 182 (259)
T ss_pred --C---HHHHHHHHHHHH-HCCC-CEEEeCCCCCCCC----HHHHHHHHHHHHHhcC
Confidence 1 345555555554 5786 4443 46432221 2234556666665444
No 255
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=23.04 E-value=1.5e+02 Score=30.98 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=41.0
Q ss_pred cceEEEEeCCCcCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCc
Q 047217 56 SMALFLHFGPNTFTDSEWGTGRADPRVFNPTRL--NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYS 126 (364)
Q Consensus 56 kfGiFiHwG~~s~~~~eW~~~~~~~~~F~p~~f--D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~ 126 (364)
+-|+.+| ++|.+ +.|+-|. | |..++++.++++|++|+-+--=|--++ -+|.|+..|
T Consensus 6 ~~Gv~~~--l~SL~-~~~GiGD----------fg~dl~~~id~~~~~G~~~~qilPl~~~~~--~~SPY~~~S 63 (497)
T PRK14508 6 KSGILLH--ITSLP-GSYGIGD----------FGKGAYEFIDFLAEAGQSYWQILPLGPTGY--GDSPYQSFS 63 (497)
T ss_pred ceEEEec--cccCC-CCCCCcc----------hHHHHHHHHHHHHHcCCCEEEEcCCCCCCC--CCCCcCccc
Confidence 4466665 46664 3476543 6 788999999999999999998887663 467776554
No 256
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=23.04 E-value=2.4e+02 Score=28.09 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHhhCCCeEEecCC---CCCcccccCCC
Q 047217 210 YFFDSWFSLIHQLQPRAVIFSDV---GPDTRWIGDEA 243 (364)
Q Consensus 210 ~~~~~~~~~i~~~qP~~vi~~~~---g~~~~w~g~e~ 243 (364)
..+++++++|.+|+|++| ++|. .+|..|..+|+
T Consensus 197 k~lpem~eLVtkY~Pevi-WSDGew~~pd~YW~s~~F 232 (454)
T KOG3340|consen 197 KTLPEMYELVTKYNPEVI-WSDGEWEAPDDYWNSTEF 232 (454)
T ss_pred cchHHHHHHHHhcCCceE-eeCCCcCCchhhhchhhh
Confidence 357899999999999985 5542 36777766654
No 257
>PRK09875 putative hydrolase; Provisional
Probab=22.87 E-value=61 Score=31.44 Aligned_cols=62 Identities=23% Similarity=0.348 Sum_probs=43.7
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
=||+...++++++|..-|+-|.-|.+.| +|......++... -.-+|+|+.+-...-|+|-|+
T Consensus 61 Rd~~~l~~is~~tgv~Iv~~TG~y~~~~--~p~~~~~~~~e~l-----a~~~i~ei~~Gi~gt~ikaGv 122 (292)
T PRK09875 61 RNAQFMLDVMRETGINVVACTGYYQDAF--FPEHVATRSVQEL-----AQEMVDEIEQGIDGTELKAGI 122 (292)
T ss_pred cCHHHHHHHHHHhCCcEEEcCcCCCCcc--CCHHHhcCCHHHH-----HHHHHHHHHHhhccCCCcccE
Confidence 3899999999999999999998888877 5655554443211 024555666666656777777
No 258
>PLN02784 alpha-amylase
Probab=22.82 E-value=1.7e+02 Score=32.84 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCCEEEEeeeec--CCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 92 QWVHAAKSAGFNRVILTAKHH--DGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 92 ~Wa~l~k~aGakYvvlTaKHH--dGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
+=++-++++|...|-|+--.. ...=.++..+. ++. +-| | ..+=+++|+++|+++||++.+
T Consensus 525 ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y--~ld-s~y-G-T~~ELk~LI~a~H~~GIkVIl 586 (894)
T PLN02784 525 EKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLY--NLN-SRY-G-TIDELKDLVKSFHEVGIKVLG 586 (894)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCCCCCCcCccccc--ccC-cCc-C-CHHHHHHHHHHHHHCCCEEEE
Confidence 336788999999998876432 11112222222 222 222 3 356799999999999999887
No 259
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=22.78 E-value=1.8e+02 Score=30.13 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCCC-----
Q 047217 91 SQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRHE----- 165 (364)
Q Consensus 91 ~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~~----- 165 (364)
++=++++|++|++..=+...--- +.|.-....|-. .-+.-.+|+++|+++||+..+-+.+||--.
T Consensus 56 ~eDi~L~~~lG~~~yRfSIsWsR---I~P~g~~~~N~~-------gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~ 125 (467)
T TIGR01233 56 PVDLELAEEYGVNGIRISIAWSR---IFPTGYGEVNEK-------GVEFYHKLFAECHKRHVEPFVTLHHFDTPEALHSN 125 (467)
T ss_pred HHHHHHHHHcCCCEEEEecchhh---ccCCCCCCcCHH-------HHHHHHHHHHHHHHcCCEEEEeccCCCCcHHHHHc
Confidence 34478999999998877654110 112111111111 146778999999999999999998876210
Q ss_pred CCCCCchhhHHHHHHHHHHHHHccCccceeeec
Q 047217 166 PSYGKTLEYNEFYMAQMAELLTRYGEIKEVWLD 198 (364)
Q Consensus 166 ~~y~~~~~y~~~~~~Ql~EL~~~Yg~i~~~WfD 198 (364)
..|.+ .+..+++..=.+-+.++||+ .-.|+=
T Consensus 126 GGW~n-~~~v~~F~~YA~~~f~~fgd-Vk~WiT 156 (467)
T TIGR01233 126 GDFLN-RENIEHFIDYAAFCFEEFPE-VNYWTT 156 (467)
T ss_pred CCCCC-HHHHHHHHHHHHHHHHHhCC-CCEEEE
Confidence 11222 22333333334455667776 345653
No 260
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=22.68 E-value=78 Score=31.10 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=22.6
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCCEEEEe
Q 047217 82 VFNPTRL-NASQWVHAAKSAGFNRVILT 108 (364)
Q Consensus 82 ~F~p~~f-D~~~Wa~l~k~aGakYvvlT 108 (364)
.|++++| ||++.++.+++.|.|.++.+
T Consensus 57 ~~d~~~FPdp~~mi~~L~~~G~k~~~~~ 84 (339)
T cd06603 57 TWDKKKFPDPEKMQEKLASKGRKLVTIV 84 (339)
T ss_pred EeCcccCCCHHHHHHHHHHCCCEEEEEe
Confidence 4567777 99999999999999977654
No 261
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=22.60 E-value=1.6e+02 Score=25.02 Aligned_cols=45 Identities=29% Similarity=0.230 Sum_probs=36.1
Q ss_pred HHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHc--CCeeEEEeCC
Q 047217 94 VHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEA--GVDLGLYLSP 160 (364)
Q Consensus 94 a~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~--Glk~GlYyS~ 160 (364)
++.++++|+.++.+-..|..+ .+.+.++.+++++. ++++++..+.
T Consensus 77 a~~~~~~g~d~v~l~~~~~~~----------------------~~~~~~~~~~i~~~~~~~~v~~~~~~ 123 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGYL----------------------AREDLELIRELREAVPDVKVVVKLSP 123 (200)
T ss_pred HHHHHHcCCCEEEEeccCCcH----------------------HHHHHHHHHHHHHhcCCceEEEEECC
Confidence 579999999999998887655 14456777788877 8999999885
No 262
>PRK09989 hypothetical protein; Provisional
Probab=22.48 E-value=84 Score=29.22 Aligned_cols=59 Identities=14% Similarity=-0.081 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 89 NASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 89 D~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
+.++-++.+++.|++++++++ |+.- ...+.... +. --.+-++++++.++++|+++++--
T Consensus 86 ~l~~~i~~A~~lg~~~v~v~~----g~~~---~~~~~~~~---~~-~~~~~l~~l~~~a~~~gv~l~lE~ 144 (258)
T PRK09989 86 DIDLALEYALALNCEQVHVMA----GVVP---AGEDAERY---RA-VFIDNLRYAADRFAPHGKRILVEA 144 (258)
T ss_pred HHHHHHHHHHHhCcCEEEECc----cCCC---CCCCHHHH---HH-HHHHHHHHHHHHHHhcCCEEEEEe
Confidence 357788889999999997643 2211 11110000 00 014668899999999999999853
No 263
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=22.48 E-value=3.4e+02 Score=27.33 Aligned_cols=23 Identities=26% Similarity=0.117 Sum_probs=19.6
Q ss_pred CCChHHHHHHHHHHcCCeeEEEeC
Q 047217 136 TGDVVAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 136 krDlV~El~~A~rk~Glk~GlYyS 159 (364)
+-| ..++++++|+.|+|..+--+
T Consensus 80 ~fD-~~~Wa~~~k~AGakY~vlTa 102 (384)
T smart00812 80 KFD-PEEWADLFKKAGAKYVVLTA 102 (384)
T ss_pred hCC-HHHHHHHHHHcCCCeEEeee
Confidence 355 47999999999999999876
No 264
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=22.21 E-value=1.9e+02 Score=29.22 Aligned_cols=77 Identities=26% Similarity=0.483 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccc-cCCCCCCCCChHHHHHHHHHHcCCeeEEEeCCCCCC
Q 047217 86 TRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVK-SSEWKNGTGDVVAELALAAKEAGVDLGLYLSPWDRH 164 (364)
Q Consensus 86 ~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~-~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~~dw~ 164 (364)
..+..+.|.+-++.|= +.|-|||+| |+. ..++. .+-|..+.+|+++.| |-|++|. |..
T Consensus 12 ~~yt~~dw~~di~~A~-------~~GIDgFaL--------Nig~~d~~~---~~~l~~a~~AA~~~g--FKlf~Sf-D~~ 70 (386)
T PF03659_consen 12 YNYTQEDWEADIRLAQ-------AAGIDGFAL--------NIGSSDSWQ---PDQLADAYQAAEAVG--FKLFFSF-DMN 70 (386)
T ss_pred CCCCHHHHHHHHHHHH-------HcCCCEEEE--------ecccCCccc---HHHHHHHHHHHHhcC--CEEEEEe-ccc
Confidence 4467777765554442 224477775 111 11111 467889999999999 6666663 211
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHccCc
Q 047217 165 EPSYGKTLEYNEFYMAQMAELLTRYGE 191 (364)
Q Consensus 165 ~~~y~~~~~y~~~~~~Ql~EL~~~Yg~ 191 (364)
-. +. . -..+|..++++|+.
T Consensus 71 ~~--~~---~---~~~~~~~~i~~y~~ 89 (386)
T PF03659_consen 71 SL--GP---W---SQDELIALIKKYAG 89 (386)
T ss_pred CC--CC---C---CHHHHHHHHHHHcC
Confidence 00 00 0 01777788887775
No 265
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=21.95 E-value=1.2e+02 Score=27.69 Aligned_cols=39 Identities=28% Similarity=0.239 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
.|+++ ++.+.++||+|+|- | -+-.|+++.|+++||.+.-
T Consensus 68 ~~~e~-a~~a~~aGA~FivS-----------------------P------~~~~~v~~~~~~~~i~~iP 106 (196)
T PF01081_consen 68 LTAEQ-AEAAIAAGAQFIVS-----------------------P------GFDPEVIEYAREYGIPYIP 106 (196)
T ss_dssp -SHHH-HHHHHHHT-SEEEE-----------------------S------S--HHHHHHHHHHTSEEEE
T ss_pred cCHHH-HHHHHHcCCCEEEC-----------------------C------CCCHHHHHHHHHcCCcccC
Confidence 55655 78899999999982 2 1235899999999997643
No 266
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=21.62 E-value=7.2e+02 Score=23.79 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=68.2
Q ss_pred CCHHHHHHHHHHcCCCEEEEeeeec-CCc--------ccCC-CCC--CCCccccCCCCCCCCChHHHHHHHHHHcCCeeE
Q 047217 88 LNASQWVHAAKSAGFNRVILTAKHH-DGF--------CLWP-SEY--TDYSVKSSEWKNGTGDVVAELALAAKEAGVDLG 155 (364)
Q Consensus 88 fD~~~Wa~l~k~aGakYvvlTaKHH-dGF--------~lW~-S~~--t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~G 155 (364)
=+.++..+.-|+.|+.-|-+.+-.+ ++. .-+. .+- .+++.-|. .--|=|...++.+.++||.++
T Consensus 30 ~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~~~N~----~YF~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 30 EEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFTRPNP----AYFDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp HHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------TT--------HHHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCCCCCH----HHHHHHHHHHHHHHHCCCeEE
Confidence 3455667888999999887776655 443 1110 000 11111111 125778899999999999998
Q ss_pred EEeCC---C---CCCCCCCCCchhhHHHHHHHHHHHHHccCcc-ceeeecCCCCCCCcchhhhHHHHHHHHHhhCCCeEE
Q 047217 156 LYLSP---W---DRHEPSYGKTLEYNEFYMAQMAELLTRYGEI-KEVWLDGAKGEGEKDMEYFFDSWFSLIHQLQPRAVI 228 (364)
Q Consensus 156 lYyS~---~---dw~~~~y~~~~~y~~~~~~Ql~EL~~~Yg~i-~~~WfDg~~~~~~~~~~~~~~~~~~~i~~~qP~~vi 228 (364)
|=... + .|.... .... .+-...=++-|+.||+.. ..+|+=++-........-.++++.+.|++..|..++
T Consensus 106 lv~~wg~~~~~~~Wg~~~-~~m~--~e~~~~Y~~yv~~Ry~~~~NviW~l~gd~~~~~~~~~~w~~~~~~i~~~dp~~L~ 182 (289)
T PF13204_consen 106 LVPFWGCPYVPGTWGFGP-NIMP--PENAERYGRYVVARYGAYPNVIWILGGDYFDTEKTRADWDAMARGIKENDPYQLI 182 (289)
T ss_dssp EESS-HHHHH-------T-TSS---HHHHHHHHHHHHHHHTT-SSEEEEEESSS--TTSSHHHHHHHHHHHHHH--SS-E
T ss_pred EEEEECCccccccccccc-cCCC--HHHHHHHHHHHHHHHhcCCCCEEEecCccCCCCcCHHHHHHHHHHHHhhCCCCcE
Confidence 75442 1 122100 0000 112223367788899986 578886543211111223568899999999996666
Q ss_pred ecC
Q 047217 229 FSD 231 (364)
Q Consensus 229 ~~~ 231 (364)
.-+
T Consensus 183 T~H 185 (289)
T PF13204_consen 183 TIH 185 (289)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 267
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.55 E-value=2.4e+02 Score=26.87 Aligned_cols=57 Identities=11% Similarity=0.050 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeC
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS 159 (364)
..+.|+.+|++|++++..-+ |+-.++.++ |+|..-.=+++|.+.|++.||.+..-..
T Consensus 43 ~~~~A~~lk~~g~~~~r~~~--------~kpRTs~~s-----~~G~g~~gl~~l~~~~~~~Gl~~~te~~ 99 (266)
T PRK13398 43 MVKVAEKLKELGVHMLRGGA--------FKPRTSPYS-----FQGLGEEGLKILKEVGDKYNLPVVTEVM 99 (266)
T ss_pred HHHHHHHHHHcCCCEEEEee--------ecCCCCCCc-----cCCcHHHHHHHHHHHHHHcCCCEEEeeC
Confidence 56788999999999444322 555555443 3454456788999999999999987443
No 268
>cd07366 3MGA_Dioxygenase Subunit B of the Class III Extradiol ring-cleavage dioxygenase, 3-O-Methylgallate Dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate. 3-O-Methylgallate Dioxygenase catalyzes the oxidization and subsequent ring-opening of 3-O-Methylgallate (3MGA) between carbons 2 and 3. 3-O-Methylgallate Dioxygenase is a key enzyme in the syringate degradation pathway, in which the syringate is first converted to 3-O-Methylgallate by O-demethylase. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which uses a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=21.47 E-value=1.9e+02 Score=28.55 Aligned_cols=69 Identities=7% Similarity=0.184 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecC---------CcccCCCCCCCCc-------------------c--ccCCCCCCCCCh
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHD---------GFCLWPSEYTDYS-------------------V--KSSEWKNGTGDV 139 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHd---------GF~lW~S~~t~~~-------------------v--~~~p~~g~krDl 139 (364)
=++.++.++++...=+|+++.||- .||+...+.-.-+ . ....+. +..+|
T Consensus 75 ~~~~~~~i~~~~PDvlVIispDH~~~f~~~~~P~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gd~eL 153 (328)
T cd07366 75 LDRLADFIRAARIDVAVIVGDDQKELFDEALLPAFAIYYGDTITNGPRTREQLDRMPPHEAAAGYAPDEARTYP-CHPEL 153 (328)
T ss_pred HHHHHHHHHHhCCCEEEEEcCccHhhhccccCCceEEeecceeecChhhccccccccccccccccCCCCCcCCC-CCHHH
Confidence 367888899999999999999775 5777654442110 1 111222 35799
Q ss_pred HHHHHHHHHHcCCeeEEEeC
Q 047217 140 VAELALAAKEAGVDLGLYLS 159 (364)
Q Consensus 140 V~El~~A~rk~Glk~GlYyS 159 (364)
..++++.+++.|+.+..-..
T Consensus 154 A~~I~~~l~~~G~dv~~~~~ 173 (328)
T cd07366 154 ARHLIKHTVADGFDVAALDH 173 (328)
T ss_pred HHHHHHHHHHcCCCeeeecc
Confidence 99999999999999886433
No 269
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=21.25 E-value=1.5e+02 Score=27.95 Aligned_cols=22 Identities=18% Similarity=0.166 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHcCCCEEEEee
Q 047217 87 RLNASQWVHAAKSAGFNRVILTA 109 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTa 109 (364)
..| ++.++++++.|+.+|++..
T Consensus 107 ~~~-~~~~~l~~~~~~~vV~m~~ 128 (258)
T cd00423 107 RGD-PEMAPLAAEYGAPVVLMHM 128 (258)
T ss_pred CCC-hHHHHHHHHcCCCEEEECc
Confidence 345 7889999999999988865
No 270
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=21.23 E-value=91 Score=31.96 Aligned_cols=39 Identities=18% Similarity=0.080 Sum_probs=30.7
Q ss_pred CHHHHHHHHHhhhcCCceeEEccCCCCCCCCCHHHHHHHHHHHHHH
Q 047217 302 SAVELLDLYYKSVGRNCLLLLNVPPNSLGLISAEDIQVLQEFSELR 347 (364)
Q Consensus 302 s~~~li~~l~~~Vs~nGnlLLNigP~~dG~Ip~~~~~~L~eiG~wl 347 (364)
|++.|+ +-|-.|||+|+-.+|+ .+++...+.++|+|=-+
T Consensus 66 s~~~ll----~Fvd~GgNilv~~s~~---~~~~~ir~~~~E~gi~~ 104 (423)
T PF03345_consen 66 SPKTLL----DFVDNGGNILVAGSSD---AIPDSIREFANELGIEF 104 (423)
T ss_pred CHHHHH----HHHhCCCcEEEEeCCC---cCcHHHHHHHHHCCeEE
Confidence 555555 5588999999999998 58989888888887444
No 271
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=21.21 E-value=2.1e+02 Score=26.63 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHH----cC-CCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 86 TRLNASQWVHAAKS----AG-FNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 86 ~~fD~~~Wa~l~k~----aG-akYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
+--|++.|.++++. .| +..+++.+-.+ + ...+.+..+.+||++.|++--+|.|.
T Consensus 47 d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~------------------~---~~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 47 DWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI------------------P---DLAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred cCCCHHHHHHHHhcccCcCCceeEEEEeCCCC------------------C---ChhHHHHHHHHHHHHcCCCEEEEeec
Confidence 34789999988853 46 77776553110 0 01356778999999999999999985
Q ss_pred C
Q 047217 161 W 161 (364)
Q Consensus 161 ~ 161 (364)
.
T Consensus 106 ~ 106 (285)
T TIGR03649 106 S 106 (285)
T ss_pred c
Confidence 3
No 272
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.20 E-value=5.6e+02 Score=25.42 Aligned_cols=79 Identities=13% Similarity=-0.008 Sum_probs=49.9
Q ss_pred CChHHHHHHHHHHcCCeeEEEeCCCCCCCCCCCCchhhHH-HHHHHHHHHHHccCccceeeecCCCCCCCcchhhhHHHH
Q 047217 137 GDVVAELALAAKEAGVDLGLYLSPWDRHEPSYGKTLEYNE-FYMAQMAELLTRYGEIKEVWLDGAKGEGEKDMEYFFDSW 215 (364)
Q Consensus 137 rDlV~El~~A~rk~Glk~GlYyS~~dw~~~~y~~~~~y~~-~~~~Ql~EL~~~Yg~i~~~WfDg~~~~~~~~~~~~~~~~ 215 (364)
++.+.++.+.+++.|.+-.+-.+- - ...+ -+..++.+.+..-|- ...+||+....+ ..-...+.
T Consensus 13 ~g~l~~l~~~l~~~g~~~~livt~--~---------~~~~~~~~~~v~~~L~~~~~-~~~~~~~v~~~p---~~~~v~~~ 77 (377)
T cd08188 13 RGALKLAGRYARRLGAKKVLLVSD--P---------GVIKAGWVDRVIESLEEAGL-EYVVFSDVSPNP---RDEEVMAG 77 (377)
T ss_pred cCHHHHHHHHHHHcCCCeEEEEeC--c---------chhhCccHHHHHHHHHHcCC-eEEEeCCCCCCC---CHHHHHHH
Confidence 689999999999998654443331 0 0111 144667777766553 566788754332 11234566
Q ss_pred HHHHHhhCCCeEEec
Q 047217 216 FSLIHQLQPRAVIFS 230 (364)
Q Consensus 216 ~~~i~~~qP~~vi~~ 230 (364)
.+.+++.++|+||--
T Consensus 78 ~~~~~~~~~d~IIai 92 (377)
T cd08188 78 AELYLENGCDVIIAV 92 (377)
T ss_pred HHHHHhcCCCEEEEe
Confidence 778899999999853
No 273
>PRK07135 dnaE DNA polymerase III DnaE; Validated
Probab=20.99 E-value=1.9e+02 Score=32.93 Aligned_cols=46 Identities=15% Similarity=0.158 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
...|++.++.|++.|++.+.+| |++.. .=+-++.++|++.|||+.+
T Consensus 18 ~~~~~elv~~Ak~~G~~avAIT---------------Dh~~l---------~G~~~f~~~a~~~gIkpIi 63 (973)
T PRK07135 18 TIKLDSLIKYAKENNLKTLVLT---------------DHNNM---------FGVPKFYKLCKKNNIKPII 63 (973)
T ss_pred CCCHHHHHHHHHHcCCCEEEEe---------------cCCcH---------HhHHHHHHHHHHcCCeEEE
Confidence 4779999999999999999885 43322 1156899999999999874
No 274
>PRK05481 lipoyl synthase; Provisional
Probab=20.98 E-value=2.4e+02 Score=27.09 Aligned_cols=58 Identities=24% Similarity=0.389 Sum_probs=37.4
Q ss_pred CCCCCHHHHHH---HHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHc--CCeeEEEeC
Q 047217 85 PTRLNASQWVH---AAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEA--GVDLGLYLS 159 (364)
Q Consensus 85 p~~fD~~~Wa~---l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~--Glk~GlYyS 159 (364)
+...++++.++ .+++.|+|.++||+-+|+-+ .+ ...+-+.++.+++++. ++++.+.++
T Consensus 77 ~~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~-------~~----------~~~~~l~~Ll~~I~~~~p~irI~~l~~ 139 (289)
T PRK05481 77 PLPLDPDEPERVAEAVARMGLKYVVITSVDRDDL-------PD----------GGAQHFAETIRAIRELNPGTTIEVLIP 139 (289)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCc-------cc----------ccHHHHHHHHHHHHhhCCCcEEEEEcc
Confidence 34577777655 45589999999999998711 00 0124466777777764 577666554
No 275
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.77 E-value=80 Score=28.61 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEEEeCC
Q 047217 84 NPTRLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGLYLSP 160 (364)
Q Consensus 84 ~p~~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~GlYyS~ 160 (364)
.-...+|=..-+.+.+||+.-+++-+---||=.|+|- + ..-.++||++++|.+||+..|-=|+
T Consensus 127 Rvgsv~Pl~~P~vaa~ag~DvaMvDTaiKDGkslFdf-------m-------~~e~l~eFvd~Ah~hGL~~AlAGs~ 189 (235)
T COG1891 127 RVGSVSPLLLPEVAAEAGADVAMVDTAIKDGKSLFDF-------M-------DEEELEEFVDLAHEHGLEVALAGSL 189 (235)
T ss_pred hccCcCccccHHHHHhcCCCEEEEecccccchhHHhh-------h-------cHHHHHHHHHHHHHcchHHHhcccc
Confidence 3446778888899999999999999988899877653 1 1356899999999999999998886
No 276
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=20.73 E-value=2.1e+02 Score=28.99 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=32.8
Q ss_pred HHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE-EeCC
Q 047217 90 ASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL-YLSP 160 (364)
Q Consensus 90 ~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl-YyS~ 160 (364)
|...++++.++||.++++-...++ .-+.++.++||++|+++++ -+|+
T Consensus 70 g~~~v~~a~~aGAdgV~v~g~~~~------------------------~~~~~~i~~a~~~G~~~~~g~~s~ 117 (430)
T PRK07028 70 GAIEVEMAAKAGADIVCILGLADD------------------------STIEDAVRAARKYGVRLMADLINV 117 (430)
T ss_pred hHHHHHHHHHcCCCEEEEecCCCh------------------------HHHHHHHHHHHHcCCEEEEEecCC
Confidence 566899999999998876422100 0256788888888888887 4554
No 277
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=20.58 E-value=1.3e+02 Score=28.09 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCee
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDL 154 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~ 154 (364)
=.|+++ ++.+.++||+|+| || -+..++.+.|+++||.+
T Consensus 78 Vl~~e~-a~~a~~aGA~FiV-----------------------sP------~~~~~v~~~~~~~~i~~ 115 (222)
T PRK07114 78 IVDAAT-AALYIQLGANFIV-----------------------TP------LFNPDIAKVCNRRKVPY 115 (222)
T ss_pred CcCHHH-HHHHHHcCCCEEE-----------------------CC------CCCHHHHHHHHHcCCCE
Confidence 356666 4789999999997 22 23458999999999864
No 278
>TIGR00594 polc DNA-directed DNA polymerase III (polc). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.42 E-value=2e+02 Score=32.93 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=36.0
Q ss_pred CCCHHHHHHHHHHcCCCEEEEeeeecCCcccCCCCCCCCccccCCCCCCCCChHHHHHHHHHHcCCeeEE
Q 047217 87 RLNASQWVHAAKSAGFNRVILTAKHHDGFCLWPSEYTDYSVKSSEWKNGTGDVVAELALAAKEAGVDLGL 156 (364)
Q Consensus 87 ~fD~~~Wa~l~k~aGakYvvlTaKHHdGF~lW~S~~t~~~v~~~p~~g~krDlV~El~~A~rk~Glk~Gl 156 (364)
...+++.++.|++.|++++.+|=..+ .. | +-++.++|++.||++.+
T Consensus 16 ~~~~~elv~~A~~~G~~alAiTDH~~---------------l~----g-----~~~f~~~~~~~gIkpI~ 61 (1022)
T TIGR00594 16 AAKIKPLVKKAKELGMPALALTDHGN---------------MF----G-----AVEFYKACKKAGIKPII 61 (1022)
T ss_pred cCCHHHHHHHHHHCCCCEEEEecCCC---------------ch----h-----HHHHHHHHHHcCCeEEE
Confidence 46799999999999999999874311 10 1 44889999999999864
No 279
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=20.08 E-value=99 Score=30.71 Aligned_cols=26 Identities=35% Similarity=0.366 Sum_probs=23.5
Q ss_pred CCCCCChHHHHHHHHHHcCCeeEEEe
Q 047217 133 KNGTGDVVAELALAAKEAGVDLGLYL 158 (364)
Q Consensus 133 ~g~krDlV~El~~A~rk~Glk~GlYy 158 (364)
..||-=+|-+|+++++++|+++|++-
T Consensus 59 GtGKTP~vi~la~~l~~rG~~~gvvS 84 (336)
T COG1663 59 GTGKTPVVIWLAEALQARGVRVGVVS 84 (336)
T ss_pred CCCcCHHHHHHHHHHHhcCCeeEEEe
Confidence 35688999999999999999999975
Done!