BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047219
(567 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 253 SVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARG 312
+V+ G I DE + S +E+ +++I G +Q +I++ + L L+ P ++ I
Sbjct: 180 TVIHCEGEPIKREDEEE---SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-- 234
Query: 313 TRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGES 372
PR +L GPPGTGKT AR +AN+ GA + L+ P +MSK GES
Sbjct: 235 ------VKPPRGILLYGPPGTGKTLIARAVANETGAFFF----LINGP--EIMSKLAGES 282
Query: 373 ERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432
E L K F A E AIIF+DE+D+ A R+ E RRI+S LL +DG +Q V
Sbjct: 283 ESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341
Query: 433 VVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 476
+V+AATNR +DPAL RFD + G+PD R EI + K+
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 253 SVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARG 312
+V+ G I DE + S +E+ +++I G +Q +I++ + L L+ P ++ I
Sbjct: 180 TVIHCEGEPIKREDEEE---SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-- 234
Query: 313 TRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGES 372
PR +L GPPGTGKT AR +AN+ GA + L+ P +MSK GES
Sbjct: 235 ------VKPPRGILLYGPPGTGKTLIARAVANETGAFFF----LINGP--EIMSKLAGES 282
Query: 373 ERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432
E L K F A E AIIF+DE+D+ A R+ E RRI+S LL +DG +Q V
Sbjct: 283 ESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341
Query: 433 VVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 476
+V+AATNR +DPAL RFD + G+PD R EI + K+
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 253 SVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARG 312
+V+ G I DE + S +E+ +++I G +Q +I++ + L L+ P ++ I
Sbjct: 180 TVIHCEGEPIKREDEEE---SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-- 234
Query: 313 TRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGES 372
PR +L GPPGTGKT AR +AN+ GA + L+ P +MSK GES
Sbjct: 235 ------VKPPRGILLYGPPGTGKTLIARAVANETGAFFF----LINGP--EIMSKLAGES 282
Query: 373 ERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432
E L K F A E AIIF+DE+D+ A R+ E RRI+S LL +DG +Q V
Sbjct: 283 ESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341
Query: 433 VVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 476
+V+AATNR +DPAL RFD + G+PD R EI + K+
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 125 bits (314), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/226 (38%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 253 SVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARG 312
+V+ G I DE + S +E+ +++I G +Q +I++ + L L+ P ++ I
Sbjct: 180 TVIHCEGEPIKREDEEE---SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG-- 234
Query: 313 TRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGES 372
PR +L GPPGTGKT AR +AN+ GA + L+ P +MSK GES
Sbjct: 235 ------VKPPRGILLYGPPGTGKTLIARAVANETGAFFF----LINGP--EIMSKLAGES 282
Query: 373 ERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432
E L K F A E AIIF+DE+D+ A R+ E RRI+S LL +DG +Q V
Sbjct: 283 ESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341
Query: 433 VVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 476
+V+AATNR +DPAL RFD + G+PD R EI + K+
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 119/239 (49%), Gaps = 27/239 (11%)
Query: 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGK 335
+++WE+I G + KRE+++ + ++ P+ + KF + VLF GPPG GK
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKF--------LKFGMTPSKGVLFYGPPGCGK 524
Query: 336 TSCARVIAN--QAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIF 393
T A+ IAN QA + +G L+ + ++GESE + ++F A + ++F
Sbjct: 525 TLLAKAIANECQANFISIKGPELL--------TMWFGESEANVREIFDKARQAA-PCVLF 575
Query: 394 LDEVDSFAVARDSEMHE---ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI- 449
DE+DS A AR + + A R+++ +L ++DG K V +I ATNR +DPA++
Sbjct: 576 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR 635
Query: 450 -SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXX---XXXXXXXMSGRDIRDVCQQA 504
R D +I LPD ++R I + SG D+ ++CQ+A
Sbjct: 636 PGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 125 bits (313), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 253 SVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARG 312
+V+ G I DE + S +E+ ++++ G +Q +I++ + L L+ P ++ I
Sbjct: 180 TVIHCEGEPIKREDEEE---SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIG-- 234
Query: 313 TRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGES 372
PR +L GPPGTGKT AR +AN+ GA + L+ P +MSK GES
Sbjct: 235 ------VKPPRGILLYGPPGTGKTLIARAVANETGAFFF----LINGP--EIMSKLAGES 282
Query: 373 ERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432
E L K F A E AIIF+DE+D+ A R+ E RRI+S LL +DG +Q V
Sbjct: 283 ESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341
Query: 433 VVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 476
+V+AATNR +DPAL RFD + G+PD R EI + K+
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 122/226 (53%), Gaps = 20/226 (8%)
Query: 253 SVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARG 312
+V+ G I DE + S +E+ ++++ G +Q +I++ + L L+ P ++ I
Sbjct: 180 TVIHCEGEPIKREDEEE---SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIG-- 234
Query: 313 TRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGES 372
PR +L GPPGTGKT AR +AN+ GA + L+ P +MSK GES
Sbjct: 235 ------VKPPRGILLYGPPGTGKTLIARAVANETGAFFF----LINGP--EIMSKLAGES 282
Query: 373 ERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432
E L K F A E AIIF+DE+D+ A R+ E RRI+S LL +DG +Q V
Sbjct: 283 ESNLRKAFEEA-EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341
Query: 433 VVIAATNRKQDLDPAL--ISRFDSMITFGLPDHENRQEIAAQYAKH 476
+V+AATNR +DPAL RFD + G+PD R EI + K+
Sbjct: 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 119/239 (49%), Gaps = 27/239 (11%)
Query: 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGK 335
+++WE+I G + KRE+++ + ++ P+ + KF + VLF GPPG GK
Sbjct: 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKF--------LKFGMTPSKGVLFYGPPGCGK 524
Query: 336 TSCARVIAN--QAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIF 393
T A+ IAN QA + +G L+ + ++GESE + ++F A + ++F
Sbjct: 525 TLLAKAIANECQANFISIKGPELL--------TMWFGESEANVREIFDKARQAA-PCVLF 575
Query: 394 LDEVDSFAVARDSEMHE---ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI- 449
DE+DS A AR + + A R+++ +L ++DG K V +I ATNR +DPA++
Sbjct: 576 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR 635
Query: 450 -SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXX---XXXXXXXMSGRDIRDVCQQA 504
R D +I LPD ++R I + SG D+ ++CQ+A
Sbjct: 636 PGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 80/237 (33%), Positives = 123/237 (51%), Gaps = 21/237 (8%)
Query: 238 IKKGSLTSEELDALVSVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTIL 297
+KKG + ++ L +++++ R L + + EI+++ I G +Q RE+ + I
Sbjct: 140 LKKGVRVTLDITTL-TIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIE 198
Query: 298 LSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLM 357
L L++PE++ + P+ VL GPPGTGKT A+ +A GA +
Sbjct: 199 LPLKNPEIFQRVG--------IKPPKGVLLYGPPGTGKTLLAKAVAATIGAN------FI 244
Query: 358 YVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATR---R 414
+ P ++ KY GES R++ ++F+ A E IIF+DEVD+ R SE A R R
Sbjct: 245 FSPASGIVDKYIGESARIIREMFAYAKE-HEPCIIFMDEVDAIGGRRFSEGTSADREIQR 303
Query: 415 ILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFDSMITFGLPDHENRQEI 469
L LL Q+DGF+ + +I ATNR LDPAL+ R D + LP+ R EI
Sbjct: 304 TLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEI 360
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/201 (38%), Positives = 105/201 (52%), Gaps = 24/201 (11%)
Query: 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGT 333
K ++++ ++ G D QK+EI + + L L ++Y+ I + PR VL GPPGT
Sbjct: 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG--------IDPPRGVLLYGPPGT 217
Query: 334 GKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNG-AII 392
GKT + +AN A + V + KY GE R++ VF LA E N +II
Sbjct: 218 GKTMLVKAVANSTKA------AFIRVNGSEFVHKYLGEGPRMVRDVFRLARE--NAPSII 269
Query: 393 FLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI 449
F+DEVDS A R + R RIL LL Q+DGF+Q V VI ATNR LDPAL+
Sbjct: 270 FIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALL 329
Query: 450 --SRFDSMITFGLPDHENRQE 468
R D I F P +R+E
Sbjct: 330 RPGRLDRKIEF--PSLRDRRE 348
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 107/194 (55%), Gaps = 18/194 (9%)
Query: 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTG 334
+ + +++IAG D K+ +++ ++L PE++ G R R +L GPPG G
Sbjct: 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFT----GLRAP-----ARGLLLFGPPGNG 160
Query: 335 KTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFL 394
KT A+ +A ++ A + + SKY GE E+L+ +F++A EL +IIF+
Sbjct: 161 KTMLAKAVAAESNAT------FFNISAASLTSKYVGEGEKLVRALFAVAREL-QPSIIFI 213
Query: 395 DEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DKKVVVIAATNRKQDLDPALISRF 452
D+VDS R H+A+RR+ + L + DG + D +V+V+ ATNR Q+LD A++ RF
Sbjct: 214 DQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRF 273
Query: 453 DSMITFGLPDHENR 466
+ LP+ E R
Sbjct: 274 IKRVYVSLPNEETR 287
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 31/239 (12%)
Query: 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTS 337
+++ + G +Q +EI++ I L ++ PE+++ + +P+ V+ GPPGTGKT
Sbjct: 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIA--------QPKGVILYGPPGTGKTL 197
Query: 338 CARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEV 397
AR +A+ + V ++ KY GE R++ ++F +A E +IIF+DE+
Sbjct: 198 LARAVAHHTDC------KFIRVSGAELVQKYIGEGSRMVRELFVMARE-HAPSIIFMDEI 250
Query: 398 DSFAVAR-------DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI- 449
DS R DSE+ +R + LL Q+DGFE K + +I ATNR LDPAL+
Sbjct: 251 DSIGSTRVEGSGGGDSEV----QRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLR 306
Query: 450 -SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXXM---SGRDIRDVCQQA 504
R D I F P R EI +++ M SG D++ VC +A
Sbjct: 307 PGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEA 365
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 105/202 (51%), Gaps = 20/202 (9%)
Query: 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPG 332
+ + +E+I G ++Q +EI + + L L+ PE+++ + P+ +L GPPG
Sbjct: 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVG--------IEPPKGILLYGPPG 61
Query: 333 TGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAII 392
TGKT A+ +A + A + V ++ K+ GE L+ +F LA E +II
Sbjct: 62 TGKTLLAKAVATETNAT------FIRVVGSELVKKFIGEGASLVKDIFKLAKE-KAPSII 114
Query: 393 FLDEVDSFAVARDSEMHEATR---RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI 449
F+DE+D+ A R + R R L LL ++DGF+ V +I ATNR LDPA++
Sbjct: 115 FIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAIL 174
Query: 450 --SRFDSMITFGLPDHENRQEI 469
RFD +I PD + R EI
Sbjct: 175 RPGRFDRIIEVPAPDEKGRLEI 196
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 107/196 (54%), Gaps = 19/196 (9%)
Query: 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTG 334
+++ W +IAG D K+ +++ ++L PE++ G R + +L GPPG G
Sbjct: 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFT----GLRAP-----AKGLLLFGPPGNG 66
Query: 335 KTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFL 394
KT AR +A + A + + + SKY G+ E+L+ +F++A + +IIF+
Sbjct: 67 KTLLARAVATECSAT------FLNISAASLTSKYVGDGEKLVRALFAVARHM-QPSIIFI 119
Query: 395 DEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD---KKVVVIAATNRKQDLDPALISR 451
DEVDS R S HEA+RR+ + L + DG + ++VV+AATNR Q+LD A + R
Sbjct: 120 DEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRR 179
Query: 452 FDSMITFGLPDHENRQ 467
F + LPD + R+
Sbjct: 180 FTKRVYVSLPDEQTRE 195
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 26/245 (10%)
Query: 269 QLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFE 328
+++ S +E S+ +I G + Q +EI++++ L L PE+Y+++ P+ V+
Sbjct: 172 KMDKSPTE-SYSDIGGLESQIQEIKESVELPLTHPELYEEMG--------IKPPKGVILY 222
Query: 329 GPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPN 388
G PGTGKT A+ +ANQ A + + ++ KY G+ RL ++F +A E N
Sbjct: 223 GAPGTGKTLLAKAVANQTSAT------FLRIVGSELIQKYLGDGPRLCRQIFKVAGE--N 274
Query: 389 G-AIIFLDEVDSFAVAR---DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDL 444
+I+F+DE+D+ R +S +R + LL Q+DGF+ V VI ATN+ + L
Sbjct: 275 APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETL 334
Query: 445 DPALI--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXX---MSGRDIRD 499
DPALI R D I F PD +++I + +SG DI+
Sbjct: 335 DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQA 394
Query: 500 VCQQA 504
+C +A
Sbjct: 395 MCTEA 399
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 116/240 (48%), Gaps = 25/240 (10%)
Query: 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGT 333
K ++++ ++ G Q ++ + + L L SPE + + + P+ +L GPPGT
Sbjct: 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG--------IDPPKGILLYGPPGT 254
Query: 334 GKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIF 393
GKT CAR +AN+ A + V ++ KY GE R++ ++F +A IIF
Sbjct: 255 GKTLCARAVANRTDAT------FIRVIGSELVQKYVGEGARMVRELFEMAR-TKKACIIF 307
Query: 394 LDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI 449
DE+D+ AR + +E R +L L+ Q+DGF+ + V+ ATNR LDPAL+
Sbjct: 308 FDEIDAVGGARFDDGAGGDNEVQRTMLE-LITQLDGFDPRGNIKVMFATNRPNTLDPALL 366
Query: 450 --SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXX---XXXXXXXXXMSGRDIRDVCQQA 504
R D + F LPD E R I ++K +G ++R VC +A
Sbjct: 367 RPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEA 426
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 107/196 (54%), Gaps = 18/196 (9%)
Query: 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKT 336
++WE+IAG + K I++ ++ + P+++ + RG P+ +L GPPGTGKT
Sbjct: 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL-RGP--------PKGILLFGPPGTGKT 131
Query: 337 SCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDE 396
+ IA+Q+GA + + SK+ GE E+++ +F++A A+IF+DE
Sbjct: 132 LIGKCIASQSGAT------FFSISASSLTSKWVGEGEKMVRALFAVAR-CQQPAVIFIDE 184
Query: 397 VDSFAVARDSEMHEATRRILSVLLRQIDG--FEQDKKVVVIAATNRKQDLDPALISRFDS 454
+DS R HE++RRI + L Q+DG + +++V+ ATNR Q++D A R
Sbjct: 185 IDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVK 244
Query: 455 MITFGLPDHENRQEIA 470
+ LP+ R++I
Sbjct: 245 RLYIPLPEASARKQIV 260
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 105/198 (53%), Gaps = 22/198 (11%)
Query: 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTS 337
++ ++ G D+Q E+ + I+L ++ + + D+ G R P+ L GPPGTGKT
Sbjct: 179 TYSDVGGLDKQIEELVEAIVLPMKRADKFKDM--GIRA------PKGALMYGPPGTGKTL 230
Query: 338 CARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEV 397
AR A Q A + + P V M Y GE +L+ F+LA E IIF+DE+
Sbjct: 231 LARACAAQTNATFLK----LAAPQLVQM--YIGEGAKLVRDAFALAKE-KAPTIIFIDEL 283
Query: 398 DSFAVAR-DSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SR 451
D+ R DSE E R +L LL Q+DGF D +V V+AATNR LDPAL+ R
Sbjct: 284 DAIGTKRFDSEKSGDREVQRTMLE-LLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGR 342
Query: 452 FDSMITFGLPDHENRQEI 469
D I F LP ++R +I
Sbjct: 343 LDRKIEFPLPSEDSRAQI 360
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 119/239 (49%), Gaps = 27/239 (11%)
Query: 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGK 335
+++WE+I G + KRE+++ + ++ P+ + KF + VLF GPPG GK
Sbjct: 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKF--------LKFGMTPSKGVLFYGPPGCGK 62
Query: 336 TSCARVIAN--QAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIF 393
T A+ IAN QA + +G L+ + ++GESE + ++F A + ++F
Sbjct: 63 TLLAKAIANECQANFISIKGPELL--------TMWFGESEANVREIFDKARQ-AAPCVLF 113
Query: 394 LDEVDSFAVARDSEMHE---ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI- 449
DE+DS A AR + + A R+++ +L ++DG K V +I ATNR +DPA++
Sbjct: 114 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR 173
Query: 450 -SRFDSMITFGLPDHENRQEIAAQYAKHXXXXX---XXXXXXXXXXMSGRDIRDVCQQA 504
R D +I LPD ++R I + SG D+ ++CQ+A
Sbjct: 174 PGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 110/197 (55%), Gaps = 19/197 (9%)
Query: 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRA-VLFEGP 330
+ K + WE++AG + K +++ ++L ++ P ++ +G R +P + +L GP
Sbjct: 19 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF----KGNR------KPTSGILLYGP 68
Query: 331 PGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGA 390
PGTGK+ A+ +A +A + V ++SK+ GESE+L+ ++F++A E +
Sbjct: 69 PGTGKSYLAKAVATEANST------FFSVSSSDLVSKWMGESEKLVKQLFAMARE-NKPS 121
Query: 391 IIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALI 449
IIF+DEVD+ R EA+RRI + LL Q++G D + V+V+ ATN LD A+
Sbjct: 122 IIFIDEVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 181
Query: 450 SRFDSMITFGLPDHENR 466
RF+ I LPD R
Sbjct: 182 RRFERRIYIPLPDLAAR 198
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 109/193 (56%), Gaps = 19/193 (9%)
Query: 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRA-VLFEGP 330
+ K + WE++AG + K +++ ++L ++ P ++ +G R +P + +L GP
Sbjct: 43 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF----KGNR------KPTSGILLYGP 92
Query: 331 PGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGA 390
PGTGK+ A+ +A +A + V ++SK+ GESE+L+ ++F++A E +
Sbjct: 93 PGTGKSYLAKAVATEANST------FFSVSSSDLVSKWMGESEKLVKQLFAMARE-NKPS 145
Query: 391 IIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALI 449
IIF+D+VD+ R EA+RRI + LL Q++G D + V+V+ ATN LD A+
Sbjct: 146 IIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 205
Query: 450 SRFDSMITFGLPD 462
RF+ I LPD
Sbjct: 206 RRFERRIYIPLPD 218
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 115/209 (55%), Gaps = 19/209 (9%)
Query: 260 RRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFES 319
+++ G + + K + WE++AG + K +++ ++L ++ P ++ +G R
Sbjct: 16 KKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF----KGNR----- 66
Query: 320 NRPRA-VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGK 378
+P + +L GPPGTGK+ A+ +A +A + V ++SK+ GESE+L+ +
Sbjct: 67 -KPTSGILLYGPPGTGKSYLAKAVATEANST------FFSVSSSDLVSKWMGESEKLVKQ 119
Query: 379 VFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAA 437
+F++A E +IIF+D+VD+ R EA+RRI + LL Q++G D + V+V+ A
Sbjct: 120 LFAMARE-NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGA 178
Query: 438 TNRKQDLDPALISRFDSMITFGLPDHENR 466
TN LD A+ RF+ I LPD R
Sbjct: 179 TNIPWQLDSAIRRRFERRIYIPLPDLAAR 207
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 102 bits (254), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 110/197 (55%), Gaps = 19/197 (9%)
Query: 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRA-VLFEGP 330
+ K + WE++AG + K +++ ++L ++ P ++ +G R +P + +L GP
Sbjct: 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLF----KGNR------KPTSGILLYGP 59
Query: 331 PGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGA 390
PGTGK+ A+ +A +A + V ++SK+ GESE+L+ ++F++A E +
Sbjct: 60 PGTGKSYLAKAVATEANST------FFSVSSSDLVSKWMGESEKLVKQLFAMARE-NKPS 112
Query: 391 IIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALI 449
IIF+D+VD+ R EA+RRI + LL Q++G D + V+V+ ATN LD A+
Sbjct: 113 IIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIR 172
Query: 450 SRFDSMITFGLPDHENR 466
RF+ I LPD R
Sbjct: 173 RRFERRIYIPLPDLAAR 189
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 19/203 (9%)
Query: 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKT 336
++W +I + + E+ IL +++P+ + + T P VL GPPG GKT
Sbjct: 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVT--------PAGVLLAGPPGCGKT 58
Query: 337 SCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLA-NELPNGAIIFLD 395
A+ +AN++G + + V +++ Y GESER + +VF A N P +IF D
Sbjct: 59 LLAKAVANESG------LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAP--CVIFFD 110
Query: 396 EVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--SRFD 453
EVD+ R A+ R+++ LL ++DG E ++V ++AATNR +DPA++ R D
Sbjct: 111 EVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLD 170
Query: 454 SMITFGLPDHENRQEIAAQYAKH 476
+ GLP +R I K+
Sbjct: 171 KTLFVGLPPPADRLAILKTITKN 193
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 104/204 (50%), Gaps = 19/204 (9%)
Query: 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGT 333
+ + W ++AG + K +++ ++L ++ P ++ G R + R +L GPPGT
Sbjct: 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLF----TGKRTPW-----RGILLFGPPGT 56
Query: 334 GKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIF 393
GK+ A+ +A +A + ++SK+ GESE+L+ +F LA E +IIF
Sbjct: 57 GKSYLAKAVATEA-----NNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE-NKPSIIF 110
Query: 394 LDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRF 452
+DE+DS +R EA RRI + L Q+ G D ++V+ ATN LD A+ RF
Sbjct: 111 IDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRF 170
Query: 453 DSMITFGLPDHENRQEIAAQYAKH 476
+ I LP+ R AA + H
Sbjct: 171 EKRIYIPLPEPHAR---AAMFKLH 191
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 19/201 (9%)
Query: 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKT 336
+ W ++AG + K +++ ++L ++ P ++ G R + R +L GPPGTGK+
Sbjct: 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLF----TGKRTPW-----RGILLFGPPGTGKS 181
Query: 337 SCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDE 396
A+ +A +A + ++SK+ GESE+L+ +F LA E +IIF+DE
Sbjct: 182 YLAKAVATEA-----NNSTFFSISSSDLVSKWLGESEKLVKNLFQLARE-NKPSIIFIDE 235
Query: 397 VDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-VVVIAATNRKQDLDPALISRFDSM 455
+DS +R EA RRI + L Q+ G D ++V+ ATN LD A+ RF+
Sbjct: 236 IDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKR 295
Query: 456 ITFGLPDHENRQEIAAQYAKH 476
I LP+ R AA + H
Sbjct: 296 IYIPLPEAHAR---AAMFRLH 313
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 107/210 (50%), Gaps = 26/210 (12%)
Query: 265 LDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRA 324
L E Q+ T+ + ++AG D+ K E+ + ++ L+ P + K P+
Sbjct: 2 LTEDQIKTT-----FADVAGCDEAKEEVAE-LVEYLREPSRFQ--------KLGGKIPKG 47
Query: 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN 384
VL GPPGTGKT A+ IA +A VP + + + G + +F A
Sbjct: 48 VLMVGPPGTGKTLLAKAIAGEAK------VPFFTISGSDFVEMFVGVGASRVRDMFEQAK 101
Query: 385 ELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRK 441
+ IIF+DE+D+ R + + H+ + L+ +L ++DGFE ++ ++VIAATNR
Sbjct: 102 KAAP-CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRP 160
Query: 442 QDLDPALI--SRFDSMITFGLPDHENRQEI 469
LDPAL+ RFD + GLPD R++I
Sbjct: 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQI 190
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/214 (30%), Positives = 111/214 (51%), Gaps = 25/214 (11%)
Query: 270 LNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEG 329
+N K + ++++AG ++ K E+ + I+ L+ PE Y ++ G + P+ VL G
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANL--GAKI------PKGVLLVG 51
Query: 330 PPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLA-NELPN 388
PPGTGKT A+ +A +A VP + + + G + +F A + P
Sbjct: 52 PPGTGKTLLAKAVAGEA------HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAP- 104
Query: 389 GAIIFLDEVDSFAVARDS----EMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQD 443
+IIF+DE+D+ +R + ++ + L+ LL ++DGF ++ V+V+AATNR +
Sbjct: 105 -SIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEI 163
Query: 444 LDPALI--SRFDSMITFGLPDHENRQEIAAQYAK 475
LDPAL+ RFD + PD R EI + K
Sbjct: 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIK 197
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 21/209 (10%)
Query: 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPP 331
T +++++++AG ++ K E++ I+ L++P + ++ G R P+ VL GPP
Sbjct: 32 TEAPKVTFKDVAGAEEAKEELK-EIVEFLKNPSRFHEM--GARI------PKGVLLVGPP 82
Query: 332 GTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAI 391
G GKT AR +A +A VP + + + G + +F A I
Sbjct: 83 GVGKTHLARAVAGEAR------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP-CI 135
Query: 392 IFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL 448
+F+DE+D+ R S + ++ + L+ LL ++DGFE+D +VV+AATNR LDPAL
Sbjct: 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL 195
Query: 449 I--SRFDSMITFGLPDHENRQEIAAQYAK 475
+ RFD I PD + R++I +A+
Sbjct: 196 LRPGRFDRQIAIDAPDVKGREQILRIHAR 224
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 108/209 (51%), Gaps = 21/209 (10%)
Query: 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPP 331
T +++++++AG ++ K E I+ L++P + ++ G R P+ VL GPP
Sbjct: 32 TEAPKVTFKDVAGAEEAK-EELKEIVEFLKNPSRFHEM--GARI------PKGVLLVGPP 82
Query: 332 GTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAI 391
G GKT AR +A +A VP + + + G + +F A I
Sbjct: 83 GVGKTHLARAVAGEAR------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP-CI 135
Query: 392 IFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL 448
+F+DE+D+ R S + ++ + L+ LL ++DGFE+D +VV+AATNR LDPAL
Sbjct: 136 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL 195
Query: 449 I--SRFDSMITFGLPDHENRQEIAAQYAK 475
+ RFD I PD + R++I +A+
Sbjct: 196 LRPGRFDRQIAIDAPDVKGREQILRIHAR 224
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 21/209 (10%)
Query: 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPP 331
T +++++++AG ++ K E++ I+ L++P + ++ G R P+ VL GPP
Sbjct: 8 TEAPKVTFKDVAGAEEAKEELK-EIVEFLKNPSRFHEM--GARI------PKGVLLVGPP 58
Query: 332 GTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAI 391
G GKT AR +A +A VP + + + G + +F A I
Sbjct: 59 GVGKTHLARAVAGEAR------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP-CI 111
Query: 392 IFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL 448
+F+DE+D+ R S + ++ + L+ LL ++DGFE+D +VV+AATNR LDPAL
Sbjct: 112 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL 171
Query: 449 I--SRFDSMITFGLPDHENRQEIAAQYAK 475
+ RFD I PD + R++I +A+
Sbjct: 172 LRPGRFDRQIAIDAPDVKGREQILRIHAR 200
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 21/209 (10%)
Query: 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPP 331
T +++++++AG ++ K E++ I+ L++P + ++ G R P+ VL GPP
Sbjct: 23 TEAPKVTFKDVAGAEEAKEELK-EIVEFLKNPSRFHEM--GARI------PKGVLLVGPP 73
Query: 332 GTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAI 391
G GKT AR +A +A VP + + + G + +F A I
Sbjct: 74 GVGKTHLARAVAGEAR------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP-CI 126
Query: 392 IFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL 448
+F+DE+D+ R S + ++ + L+ LL ++DGFE+D +VV+AATNR LDPAL
Sbjct: 127 VFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPAL 186
Query: 449 I--SRFDSMITFGLPDHENRQEIAAQYAK 475
+ RFD I PD + R++I +A+
Sbjct: 187 LRPGRFDRQIAIDAPDVKGREQILRIHAR 215
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 104/199 (52%), Gaps = 23/199 (11%)
Query: 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKT 336
++++++ G ++ E+++ + L+ P ++ I G R P+ +L GPPGTGKT
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRI--GARM------PKGILLVGPPGTGKT 63
Query: 337 SCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN-ELPNGAIIFLD 395
AR +A +A VP ++ + + G + +F+ A P I+F+D
Sbjct: 64 LLARAVAGEAN------VPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAP--CIVFID 115
Query: 396 EVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--S 450
E+D+ R + + H+ + L+ LL ++DGF+ + ++V+AATNR LDPAL+
Sbjct: 116 EIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPG 175
Query: 451 RFDSMITFGLPDHENRQEI 469
RFD I PD R++I
Sbjct: 176 RFDKKIVVDPPDMLGRKKI 194
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 103/199 (51%), Gaps = 23/199 (11%)
Query: 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKT 336
++++++ G ++ E+++ + L+ P ++ I G R P+ +L GPPGTG T
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRI--GARM------PKGILLVGPPGTGAT 63
Query: 337 SCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN-ELPNGAIIFLD 395
AR +A +A VP ++ + + G + +F+ A P I+F+D
Sbjct: 64 LLARAVAGEAN------VPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAP--CIVFID 115
Query: 396 EVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALI--S 450
E+D+ R + + H+ + L+ LL ++DGF+ + ++V+AATNR LDPAL+
Sbjct: 116 EIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPG 175
Query: 451 RFDSMITFGLPDHENRQEI 469
RFD I PD R++I
Sbjct: 176 RFDKKIVVDPPDMLGRKKI 194
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 109/243 (44%), Gaps = 35/243 (14%)
Query: 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKT 336
+S++++AG + K E+ + + L+SPE + + + P+ L GPPG GKT
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDY-LKSPERF--------LQLGAKVPKGALLLGPPGCGKT 53
Query: 337 SCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLG--KVFSLANELPNGA--II 392
A+ +A +A VP + + E LG +V SL E A I+
Sbjct: 54 LLAKAVATEA-----------QVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIV 102
Query: 393 FLDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPAL 448
++DE+D+ R + M + + L+ LL ++DG V+V+A+TNR LD AL
Sbjct: 103 YIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGAL 162
Query: 449 I--SRFDSMITFGLPDHENRQEIAAQYAKHXXXXXXXXXXXXXXX-----MSGRDIRDVC 501
+ R D + LP + R+EI Q+ K SG DI ++C
Sbjct: 163 MRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222
Query: 502 QQA 504
+A
Sbjct: 223 NEA 225
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 26/158 (16%)
Query: 301 QSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360
Q VY + A+ + E +L GPPG GKT+ A VIA++ G
Sbjct: 22 QKLRVYLEAAKARKEPLEH-----LLLFGPPGLGKTTLAHVIAHELG------------- 63
Query: 361 LEVVMSKYYGESERLLGKVFS-LANELPNGAIIFLDEVDSFAVARDSEMHEATRR-ILSV 418
V + G + G + + LAN L G I+F+DE+ + + ++ A ++ +
Sbjct: 64 --VNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI 121
Query: 419 LLRQIDGFEQDK----KVVVIAATNRKQDLDPALISRF 452
++ Q + + +I AT R + L+SRF
Sbjct: 122 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRF 159
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 26/158 (16%)
Query: 301 QSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360
Q VY + A+ + E +L GPPG GKT+ A VIA++ G
Sbjct: 22 QKLRVYLEAAKARKEPLEH-----LLLFGPPGLGKTTLAHVIAHELG------------- 63
Query: 361 LEVVMSKYYGESERLLGKVFS-LANELPNGAIIFLDEVDSFAVARDSEMHEATRR-ILSV 418
V + G + G + + LAN L G I+F+DE+ + + ++ A ++ +
Sbjct: 64 --VNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI 121
Query: 419 LLRQIDGFEQDK----KVVVIAATNRKQDLDPALISRF 452
++ Q + + +I AT R + L+SRF
Sbjct: 122 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRF 159
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 26/158 (16%)
Query: 301 QSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGA-MPWQGVPLMYV 359
Q VY + A+ + E +L GPPG GKT+ A VIA++ G + P +
Sbjct: 22 QKLRVYLEAAKARKEPLEH-----LLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76
Query: 360 PLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRR-ILSV 418
P ++ LAN L G I+F+DE+ + + ++ A ++ +
Sbjct: 77 PGDLAA---------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDI 121
Query: 419 LLRQIDGFEQDK----KVVVIAATNRKQDLDPALISRF 452
++ Q + + +I AT R + L+SRF
Sbjct: 122 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRF 159
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 82/191 (42%), Gaps = 40/191 (20%)
Query: 270 LNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVY--DDIARGTRCKFESNRPRAVLF 327
++TS + S EN+ ++ + E D EVY +++ R + + +LF
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLD---------EVYGQNEVITTVRKFVDEGKLPHLLF 51
Query: 328 EGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP-----LEVVMS--KYYGESERLLGKVF 380
GPPGTGKTS +A + + + L ++VV + K + + ++ K F
Sbjct: 52 YGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGF 111
Query: 381 SLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR 440
L I LDE D+ A A RR+ I+ + ++ + V+A N
Sbjct: 112 KL---------IILDEADAMTNA----AQNALRRV-------IERYTKNTRFCVLA--NY 149
Query: 441 KQDLDPALISR 451
L PAL+S+
Sbjct: 150 AHKLTPALLSQ 160
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 327 FEGPPGTGKTSCARVIANQAGAMPW-QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANE 385
F G PGTGKT+ A +A + + + L+ V + ++ +Y G + +V A
Sbjct: 65 FTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-- 122
Query: 386 LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDL- 444
G ++F+DE ++ + R + + + +LL+ ++ D V++ +R ++
Sbjct: 123 --MGGVLFIDE--AYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 178
Query: 445 --DPALISRFDSMITFGLPDHENRQ--EIAAQ 472
+P SR I F PD+ + + EIA
Sbjct: 179 QSNPGFRSRIAHHIEF--PDYSDEELFEIAGH 208
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 14/152 (9%)
Query: 327 FEGPPGTGKTSCARVIANQAGAMPW-QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANE 385
F G PGTGKT+ A +A + + + L+ V + ++ +Y G + +V A
Sbjct: 72 FTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-- 129
Query: 386 LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDL- 444
G ++F+DE ++ + R + + + +LL+ ++ D V++ +R ++
Sbjct: 130 --MGGVLFIDE--AYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 185
Query: 445 --DPALISRFDSMITFGLPDHENRQ--EIAAQ 472
+P SR I F PD+ + + EIA
Sbjct: 186 QSNPGFRSRIAHHIEF--PDYSDEELFEIAGH 215
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN 384
+LF GPPG GKT+ A +A + W+ + LE+ S G + KV A
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWR-----HNFLELNASDERG-INVIREKVKEFAR 102
Query: 385 ELPNGA----IIFLDEVDSF------AVARDSEMHEATRRIL 416
P G IIFLDE D+ A+ R EM + R +
Sbjct: 103 TKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFI 144
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 323 RAVLFEGPPGTGKTSCARVIANQAGA-MPW 351
RAVL GPPGTGKT+ A IA + G+ +P+
Sbjct: 64 RAVLLAGPPGTGKTALALAIAQELGSKVPF 93
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 323 RAVLFEGPPGTGKTSCARVIANQAGA-MPW 351
RAVL GPPGTGKT+ A IA + G+ +P+
Sbjct: 78 RAVLLAGPPGTGKTALALAIAQELGSKVPF 107
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 20/155 (12%)
Query: 327 FEGPPGTGKTSCARVIANQAGAMPWQGV----PLMYVPLEVVMSKYYGESERLLGKVFSL 382
F G PGTGKT+ A AG + G L+ V + ++ +Y G + +V
Sbjct: 72 FTGNPGTGKTTVA---LKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKR 128
Query: 383 ANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ 442
A G ++F+DE ++ + R + + + +LL+ + D V++ +R +
Sbjct: 129 A----XGGVLFIDE--AYYLYRPDNERDYGQEAIEILLQVXENNRDDLVVILAGYADRXE 182
Query: 443 DL---DPALISRFDSMITFGLPDHENRQ--EIAAQ 472
+ +P SR I F PD+ + + EIA
Sbjct: 183 NFFQSNPGFRSRIAHHIEF--PDYSDEELFEIAGH 215
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN 384
+LF GPPGTGKT+ A +A W+ +E+ S G + + K+ A
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRD-----NFIEMNASDERG-IDVVRHKIKEFAR 94
Query: 385 ELPNGA----IIFLDEVDSF------AVARDSEMH-EATRRILS 417
P G IIFLDE D+ A+ R EM+ ++ R ILS
Sbjct: 95 TAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILS 138
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 17/104 (16%)
Query: 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN 384
+LF GPPGTGKT+ A +A W+ +E+ S G + + K+ A
Sbjct: 41 LLFSGPPGTGKTATAIALARDLFGENWRD-----NFIEMNASDERG-IDVVRHKIKEFAR 94
Query: 385 ELPNGA----IIFLDEVDSF------AVARDSEMH-EATRRILS 417
P G IIFLDE D+ A+ R EM+ ++ R ILS
Sbjct: 95 TAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILS 138
>pdb|2QBY|B Chain B, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 384
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 33/174 (18%)
Query: 326 LFEGPPGTGKTSCARVIANQAGAMP-----WQGVPLMYVPLEVVMSKYYGESERLLGKV- 379
LF G GTGKT ++ I N+ + ++ V YV V L GK+
Sbjct: 49 LFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLT 108
Query: 380 -FSL----------ANELPNG-----AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQI 423
FS+ +++ NG AII+LDEVD+ R ++ +L LLR
Sbjct: 109 GFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDI------VLYQLLRS- 161
Query: 424 DGFEQDKKVVVIAA-TNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH 476
+ + V++I+ N + ++P ++S + F D E + I ++YA++
Sbjct: 162 ---DANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY 212
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 325 VLFEGPPGTGKTSCARVIANQA--GAMPWQGVPLMYVPLEVVMSKYYG-ESERLLGKVFS 381
VL G G GK AR+I + P+ + + +P ++ ++ +G E G V S
Sbjct: 163 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 222
Query: 382 LAN--ELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ-DKKVVVIAAT 438
EL +G +FLDE+ ++ +++ R I S ++ G ++ + V ++AAT
Sbjct: 223 KEGFFELADGGTLFLDEIGELSLEAQAKL---LRVIESGKFYRLGGRKEIEVNVRILAAT 279
Query: 439 NR 440
NR
Sbjct: 280 NR 281
>pdb|1NY6|A Chain A, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|B Chain B, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|C Chain C, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|D Chain D, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|E Chain E, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|F Chain F, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|G Chain G, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|H Chain H, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|I Chain I, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|J Chain J, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|K Chain K, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|L Chain L, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|M Chain M, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
pdb|1NY6|N Chain N, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
Active State
Length = 267
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 325 VLFEGPPGTGKTSCARVIANQA--GAMPWQGVPLMYVPLEVVMSKYYG-ESERLLGKVFS 381
VL G G GK AR+I + P+ + + +P ++ ++ +G E G V S
Sbjct: 43 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 102
Query: 382 LAN--ELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ-DKKVVVIAAT 438
EL +G +FLDE+ ++ +++ R I S ++ G ++ + V ++AAT
Sbjct: 103 KEGFFELADGGTLFLDEIGELSLEAQAKL---LRVIESGKFYRLGGRKEIEVNVRILAAT 159
Query: 439 NR 440
NR
Sbjct: 160 NR 161
>pdb|3NBX|X Chain X, Crystal Structure Of E. Coli Rava (Regulatory Atpase
Variant A) In Complex With Adp
Length = 500
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 33/158 (20%)
Query: 315 CKFESNRPRAVLFEGPPGTGKTSCARVIA---NQAGAMPWQGVPL-----MYVPLEVVMS 366
C + +V GPPG K+ AR + A A + ++ PL +
Sbjct: 34 CLLAALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQAL 93
Query: 367 KYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLL-----R 421
K G ERL + LP I+FLDE+ +A IL+ LL R
Sbjct: 94 KDEGRYERLT------SGYLPEAEIVFLDEI-----------WKAGPAILNTLLTAINER 136
Query: 422 QIDGFEQDKKV---VVIAATNRKQDLDPALISRFDSMI 456
Q +K+ +++AA+N + D +L + +D M+
Sbjct: 137 QFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRML 174
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 42/166 (25%)
Query: 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN 384
VL GPPG GKT+ A +IA++ ++V V+ K G + ++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-------IHVTSGPVLVKQ--------GDMAAILT 98
Query: 385 ELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV------------ 432
L G ++F+DE+ H + + +L I+ F+ D +
Sbjct: 99 SLERGDVLFIDEI-----------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRID 147
Query: 433 ----VVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYA 474
++ AT R L L SRF ++ + +EI + A
Sbjct: 148 IQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA 193
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 42/166 (25%)
Query: 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN 384
VL GPPG GKT+ A +IA++ ++V V+ K G + ++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-------IHVTSGPVLVKQ--------GDMAAILT 98
Query: 385 ELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV------------ 432
L G ++F+DE+ H + + +L I+ F+ D +
Sbjct: 99 SLERGDVLFIDEI-----------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRID 147
Query: 433 ----VVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYA 474
++ AT R L L SRF ++ + +EI + A
Sbjct: 148 IQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA 193
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 317 FESNRPRAVLFEGPPGTGKTSCARVIANQAGA 348
E+ +++ GPPGTGKT+ A VIA A A
Sbjct: 45 IEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN 384
VL GPPG GKT+ A +IA++ ++V V+ K G + ++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-------IHVTSGPVLVKQ--------GDMAAILT 98
Query: 385 ELPNGAIIFLDEVDSFAVARDSEMHEA 411
L G ++F+DE+ A + ++ A
Sbjct: 99 SLERGDVLFIDEIHRLNKAVEELLYSA 125
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 25/94 (26%)
Query: 323 RAVLFEGPPGTGKTSCARVIANQAG--------------AMPWQGVPLMYVPLEVV-MSK 367
RA + GPPG GKT+ A ++A + G + GV + VV K
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 368 YYGESERLLGKVFSLANELPNGAIIFLDEVDSFA 401
+ E++ L GK F +I +DEVD +
Sbjct: 138 HNEEAQNLNGKHF----------VIIMDEVDGMS 161
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 22/88 (25%)
Query: 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFS 381
P+ +L GP G GKT AR +A A A P V + + E + +V S
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANA-----------PFIKVEATKFTEVGYVGKEVDS 98
Query: 382 LANELPNGA-----------IIFLDEVD 398
+ +L + A I+F+DE+D
Sbjct: 99 IIRDLTDSAGGAIDAVEQNGIVFIDEID 126
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN 384
VL GPPG GKT+ A +IA++ ++V V+ K G + ++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-------IHVTSGPVLVKQ--------GDMAAILT 98
Query: 385 ELPNGAIIFLDEVDSFAVARDSEMHEA 411
L G ++F+DE+ A + ++ A
Sbjct: 99 SLERGDVLFIDEIHRLNKAVEELLYSA 125
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 15/87 (17%)
Query: 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN 384
VL GPPG GKT+ A +IA++ ++V V+ K G + ++
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-------IHVTSGPVLVKQ--------GDMAAILT 98
Query: 385 ELPNGAIIFLDEVDSFAVARDSEMHEA 411
L G ++F+DE+ A + ++ A
Sbjct: 99 SLERGDVLFIDEIHRLNKAVEELLYSA 125
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 64/166 (38%), Gaps = 42/166 (25%)
Query: 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN 384
VL GPPG G+T+ A +IA++ ++V V+ K G + ++
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTN-------IHVTSGPVLVKQ--------GDMAAILT 98
Query: 385 ELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV------------ 432
L G ++F+DE+ H + + +L I+ F+ D +
Sbjct: 99 SLERGDVLFIDEI-----------HRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRID 147
Query: 433 ----VVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYA 474
++ AT R L L SRF ++ + +EI + A
Sbjct: 148 IQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA 193
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 22/134 (16%)
Query: 325 VLFEGPPGTGKTSCARVIANQAGA-MPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLA 383
+LF GP G GKT+ A +I+ + A + P + G + ++
Sbjct: 58 ILFSGPAGLGKTTLANIISYEXSANIKTTAAPXIEKS----------------GDLAAIL 101
Query: 384 NELPNGAIIFLDEVDSFAVARDSEMHEATRRI-LSVLLRQIDGFEQDK----KVVVIAAT 438
L G I+F+DE+ + A + ++ A L +++ + K K +I AT
Sbjct: 102 TNLSEGDILFIDEIHRLSPAIEEVLYPAXEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161
Query: 439 NRKQDLDPALISRF 452
R L L RF
Sbjct: 162 TRAGXLSNPLRDRF 175
>pdb|3SZU|A Chain A, Isph:hmbpp Complex Structure Of E126q Mutant
pdb|3SZU|B Chain B, Isph:hmbpp Complex Structure Of E126q Mutant
Length = 328
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 325 VLFEGPPGTGKTSCA---RVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVF- 380
+L P G CA R I+ A+ G P+ YV EVV ++Y +S R G +F
Sbjct: 15 ILLANPRGF----CAGVDRAISIVENALAIYGAPI-YVRHEVVHNRYVVDSLRERGAIFI 69
Query: 381 SLANELPNGAIIFLD------EVDSFAVARDSEMHEAT 412
+E+P+GAI+ V + A +RD + +AT
Sbjct: 70 EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDAT 107
>pdb|3T0F|A Chain A, Isph:hmbpp (Substrate) Structure Of The E126d Mutant
pdb|3T0F|B Chain B, Isph:hmbpp (Substrate) Structure Of The E126d Mutant
Length = 328
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 325 VLFEGPPGTGKTSCA---RVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVF- 380
+L P G CA R I+ A+ G P+ YV EVV ++Y +S R G +F
Sbjct: 15 ILLANPRGF----CAGVDRAISIVENALAIYGAPI-YVRHEVVHNRYVVDSLRERGAIFI 69
Query: 381 SLANELPNGAIIFLD------EVDSFAVARDSEMHEAT 412
+E+P+GAI+ V + A +RD + +AT
Sbjct: 70 EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDAT 107
>pdb|3ZGL|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex
With Ambpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGL|B Chain B, Crystal Structures Of Escherichia Coli Isph In Complex
With Ambpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGN|A Chain A, Crystal Structures Of Escherichia Coli Isph In Complex
With Tmbpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
pdb|3ZGN|B Chain B, Crystal Structures Of Escherichia Coli Isph In Complex
With Tmbpp A Potent Inhibitor Of The Methylerythritol
Phosphate Pathway
Length = 332
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 325 VLFEGPPGTGKTSCA---RVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVF- 380
+L P G CA R I+ A+ G P+ YV EVV ++Y +S R G +F
Sbjct: 19 ILLANPRGF----CAGVDRAISIVENALAIYGAPI-YVRHEVVHNRYVVDSLRERGAIFI 73
Query: 381 SLANELPNGAIIFLD------EVDSFAVARDSEMHEAT 412
+E+P+GAI+ V + A +RD + +AT
Sbjct: 74 EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDAT 111
>pdb|3KE8|A Chain A, Crystal Structure Of Isph:hmbpp-Complex
pdb|3KE8|B Chain B, Crystal Structure Of Isph:hmbpp-Complex
pdb|3KE9|A Chain A, Crystal Structure Of Isph:intermediate-Complex
pdb|3KE9|B Chain B, Crystal Structure Of Isph:intermediate-Complex
pdb|3KEF|A Chain A, Crystal Structure Of Isph:dmapp-Complex
pdb|3KEF|B Chain B, Crystal Structure Of Isph:dmapp-Complex
pdb|3KEL|A Chain A, Crystal Structure Of Isph:pp Complex
pdb|3KEL|B Chain B, Crystal Structure Of Isph:pp Complex
pdb|3KEM|A Chain A, Crystal Structure Of Isph:ipp Complex
pdb|3KEM|B Chain B, Crystal Structure Of Isph:ipp Complex
Length = 326
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 325 VLFEGPPGTGKTSCA---RVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVF- 380
+L P G CA R I+ A+ G P+ YV EVV ++Y +S R G +F
Sbjct: 13 ILLANPRGF----CAGVDRAISIVENALAIYGAPI-YVRHEVVHNRYVVDSLRERGAIFI 67
Query: 381 SLANELPNGAIIFLD------EVDSFAVARDSEMHEAT 412
+E+P+GAI+ V + A +RD + +AT
Sbjct: 68 EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDAT 105
>pdb|4EB3|A Chain A, Crystal Structure Of Isph In Complex With Iso-hmbpp
pdb|4EB3|B Chain B, Crystal Structure Of Isph In Complex With Iso-hmbpp
Length = 327
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 325 VLFEGPPGTGKTSCA---RVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVF- 380
+L P G CA R I+ A+ G P+ YV EVV ++Y +S R G +F
Sbjct: 15 ILLANPRGF----CAGVDRAISIVENALAIYGAPI-YVRHEVVHNRYVVDSLRERGAIFI 69
Query: 381 SLANELPNGAIIFLD------EVDSFAVARDSEMHEAT 412
+E+P+GAI+ V + A +RD + +AT
Sbjct: 70 EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDAT 107
>pdb|3F7T|A Chain A, Structure Of Active Isph Shows A Novel Fold With A
[3fe-4s] Cluster In The Catalytic Centre
pdb|3F7T|B Chain B, Structure Of Active Isph Shows A Novel Fold With A
[3fe-4s] Cluster In The Catalytic Centre
pdb|3SZL|A Chain A, Isph:ligand Mutants - Wt 70sec
pdb|3SZL|B Chain B, Isph:ligand Mutants - Wt 70sec
pdb|3SZO|A Chain A, Isph:hmbpp Complex After 3 Minutes X-Ray Pre-Exposure
pdb|3SZO|B Chain B, Isph:hmbpp Complex After 3 Minutes X-Ray Pre-Exposure
Length = 328
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 325 VLFEGPPGTGKTSCA---RVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVF- 380
+L P G CA R I+ A+ G P+ YV EVV ++Y +S R G +F
Sbjct: 15 ILLANPRGF----CAGVDRAISIVENALAIYGAPI-YVRHEVVHNRYVVDSLRERGAIFI 69
Query: 381 SLANELPNGAIIFLD------EVDSFAVARDSEMHEAT 412
+E+P+GAI+ V + A +RD + +AT
Sbjct: 70 EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDAT 107
>pdb|4H4C|A Chain A, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl
Diphosphate
pdb|4H4C|B Chain B, Isph In Complex With (e)-4-fluoro-3-methylbut-2-enyl
Diphosphate
pdb|4H4D|A Chain A, Isph In Complex With (e)-4-amino-3-methylbut-2-enyl
Diphosphate
pdb|4H4D|B Chain B, Isph In Complex With (e)-4-amino-3-methylbut-2-enyl
Diphosphate
pdb|4H4E|A Chain A, Isph In Complex With (e)-4-mercapto-3-methylbut-2-enyl
Diphosphate
pdb|4H4E|B Chain B, Isph In Complex With (e)-4-mercapto-3-methylbut-2-enyl
Diphosphate
Length = 323
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 325 VLFEGPPGTGKTSCA---RVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVF- 380
+L P G CA R I+ A+ G P+ YV EVV ++Y +S R G +F
Sbjct: 11 ILLANPRGF----CAGVDRAISIVENALAIYGAPI-YVRHEVVHNRYVVDSLRERGAIFI 65
Query: 381 SLANELPNGAIIFLD------EVDSFAVARDSEMHEAT 412
+E+P+GAI+ V + A +RD + +AT
Sbjct: 66 EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDAT 103
>pdb|3T0G|A Chain A, Isph:hmbpp (Substrate) Structure Of The T167c Mutant
pdb|3T0G|B Chain B, Isph:hmbpp (Substrate) Structure Of The T167c Mutant
Length = 328
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 325 VLFEGPPGTGKTSCA---RVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVF- 380
+L P G CA R I+ A+ G P+ YV EVV ++Y +S R G +F
Sbjct: 15 ILLANPRGF----CAGVDRAISIVENALAIYGAPI-YVRHEVVHNRYVVDSLRERGAIFI 69
Query: 381 SLANELPNGAIIFLD------EVDSFAVARDSEMHEAT 412
+E+P+GAI+ V + A +RD + +AT
Sbjct: 70 EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDAT 107
>pdb|3URK|A Chain A, Isph In Complex With Propynyl Diphosphate (1061)
pdb|3URK|B Chain B, Isph In Complex With Propynyl Diphosphate (1061)
pdb|3UTC|A Chain A, Ec_isph In Complex With (E)-4-Hydroxybut-3-Enyl
Diphosphate
pdb|3UTC|B Chain B, Ec_isph In Complex With (E)-4-Hydroxybut-3-Enyl
Diphosphate
pdb|3UTD|A Chain A, Ec_isph In Complex With 4-Oxopentyl Diphosphate
pdb|3UTD|B Chain B, Ec_isph In Complex With 4-Oxopentyl Diphosphate
pdb|3UV3|A Chain A, Ec_isph In Complex With But-2-Ynyl Diphosphate (1086)
pdb|3UV3|B Chain B, Ec_isph In Complex With But-2-Ynyl Diphosphate (1086)
pdb|3UV6|A Chain A, Ec_isph In Complex With 4-Hydroxybutyl Diphosphate (1301)
pdb|3UV6|B Chain B, Ec_isph In Complex With 4-Hydroxybutyl Diphosphate (1301)
pdb|3UV7|A Chain A, Ec_isph In Complex With Buta-2,3-Dienyl Diphosphate (1300)
pdb|3UV7|B Chain B, Ec_isph In Complex With Buta-2,3-Dienyl Diphosphate (1300)
pdb|3UWM|A Chain A, Ec_isph In Complex With 4-Oxobutyl Diphosphate (1302)
pdb|3UWM|B Chain B, Ec_isph In Complex With 4-Oxobutyl Diphosphate (1302)
Length = 324
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 15/98 (15%)
Query: 325 VLFEGPPGTGKTSCA---RVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVF- 380
+L P G CA R I+ A+ G P+ YV EVV ++Y +S R G +F
Sbjct: 11 ILLANPRGF----CAGVDRAISIVENALAIYGAPI-YVRHEVVHNRYVVDSLRERGAIFI 65
Query: 381 SLANELPNGAIIFLD------EVDSFAVARDSEMHEAT 412
+E+P+GAI+ V + A +RD + +AT
Sbjct: 66 EQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDAT 103
>pdb|1DNV|A Chain A, Parvovirus (Densovirus) From Galleria Mellonella
Length = 437
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 329 GPPGTGKTSCARVIANQAGAMPWQGVPL 356
GP GTG T+ R++ +PWQ +PL
Sbjct: 56 GPTGTGTTAVNRLLTTCLAEIPWQKLPL 83
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFS 381
P+ +L GP G GKT AR +A A A P V + + E + +V S
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANA-----------PFIKVEATKFTEVGYVGKEVDS 97
Query: 382 LANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLL 420
+ +L + A+ + V + R A RIL VL+
Sbjct: 98 IIRDLTDAAVKMV-RVQAIEKNRYRAEELAEERILDVLI 135
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFS 381
P+ +L GP G GKT AR +A A A P V + + E + +V S
Sbjct: 56 PKNILMIGPTGVGKTEIARRLAKLANA-----------PFIKVEATKFTEVGYVGKEVDS 104
Query: 382 LANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLL 420
+ +L + A+ + V + R A RIL VL+
Sbjct: 105 IIRDLTDAAVKMV-RVQAIEKNRYRAEELAEERILDVLI 142
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 12/99 (12%)
Query: 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFS 381
P+ +L GP G GKT AR +A A A P V + + E + +V S
Sbjct: 50 PKNILMIGPTGVGKTEIARRLAKLANA-----------PFIKVEATKFTEVGYVGKEVDS 98
Query: 382 LANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLL 420
+ +L + A+ + V + R A RIL VL+
Sbjct: 99 IIRDLTDAAVKMV-RVQAIEKNRYRAEELAEERILDVLI 136
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 329 GPPGTGKTSCARVIANQA--GAMP--WQGVPLMYVPLEVVMS--KYYGE-SERLLGKVFS 381
G PG GKT+ +A + G +P +G ++ + + +++ KY GE ERL G +
Sbjct: 50 GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLND 109
Query: 382 LANELPNGAIIFLDEVDSFAVA 403
LA + N I+F+DE+ + A
Sbjct: 110 LAKQEGN-VILFIDELHTMVGA 130
>pdb|3R8C|A Chain A, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|3R8C|B Chain B, Crystal Structure Of Cytidylate Kinase (Cmk) From
Mycobacterium Abscessus
pdb|4DIE|A Chain A, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|B Chain B, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|C Chain C, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
pdb|4DIE|D Chain D, Crystal Structure Of A Cytidylate Kinase Cmk From
Mycobacterium Abscessus Bound To
Cytidine-5'-Monophosphate
Length = 228
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 325 VLFEGPPGTGKTSCARVIANQAGA 348
V +GP GTGK+S A+ +A Q GA
Sbjct: 7 VAVDGPSGTGKSSVAKELARQLGA 30
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPL-MYVPLEVVMSKYYGES-ERLLGKVFSL 382
+L GP G+GKT A+ +A +P+ + + + Y GE E +L ++
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHL------DIPIAISDATSLTEAGYVGEDVENILTRLLQA 128
Query: 383 AN---ELPNGAIIFLDEVDSFAVARDSEMHEATRRI 415
++ + I+F+DE+D ++R SE TR +
Sbjct: 129 SDWNVQKAQKGIVFIDEIDK--ISRLSENRSITRDV 162
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 323 RAVLFEGPPGTGKTSCARVIANQAG 347
RAVL G PGTGKT+ A +A G
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALG 95
>pdb|1V94|A Chain A, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1V94|B Chain B, Crystal Structure Of Isocitrate Dehydrogenase From
Aeropyrum Pernix
pdb|1TYO|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1TYO|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix In Complex With Etheno-Nadp
pdb|1XGV|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XGV|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
Aeropyrum Pernix
pdb|1XKD|A Chain A, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
pdb|1XKD|B Chain B, Ternary Complex Of Isocitrate Dehydrogenase From The
Hyperthermophile Aeropyrum Pernix
Length = 435
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 226 SLITSDKPEIEFIKKGSLTSEELDALVSVLQLAGRRIYGLDEPQLNTSKSEISWENIAGY 285
SL D P + FI+ + E +++ + V+ A +++YG S+ + WE +AG+
Sbjct: 29 SLRVPDNPVVAFIRGDGVGPEVVESALKVVDAAVKKVYG-------GSRRIVWWELLAGH 81
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 329 GPPGTGKTSCARVIANQ--AGAMP--WQGVPLMYVPLEVVMS--KYYGESERLLGKVFSL 382
G PG GKT+ +A + G +P +G ++ + + +++ KY GE E L V
Sbjct: 61 GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQE 120
Query: 383 ANELPNGAIIFLDEVDSFAVARDSE 407
+ I+F+DE+ + A +E
Sbjct: 121 VVQSQGEVILFIDELHTVVGAGKAE 145
>pdb|3O4Z|A Chain A, Tel2 Structure And Function In The Hsp90-Dependent
Maturation Of Mtor And Atr Complexes
pdb|3O4Z|B Chain B, Tel2 Structure And Function In The Hsp90-Dependent
Maturation Of Mtor And Atr Complexes
pdb|3O4Z|C Chain C, Tel2 Structure And Function In The Hsp90-Dependent
Maturation Of Mtor And Atr Complexes
pdb|3O4Z|D Chain D, Tel2 Structure And Function In The Hsp90-Dependent
Maturation Of Mtor And Atr Complexes
Length = 647
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 54/111 (48%), Gaps = 14/111 (12%)
Query: 235 IEFIKKGSLTSEELDALVSVLQLAGRRIYGLDEPQLNTSK-----SEISWENIAGYDQQK 289
I + L+ ++ +L+S L L+ R + GLD+P + K + + W++ + ++ +
Sbjct: 481 INILFNSELSLQQRMSLLSALGLSARELRGLDDPTIVKPKFDFPTNRLPWDDQSHHNSRL 540
Query: 290 REIEDTILLSLQSPEVY------DDIARGTRCKFESNRPRAVLFEGPPGTG 334
E++++ + ++ V+ D +GT+ +F R A LF P G
Sbjct: 541 VEVQESTSMIKKTKTVWKSRKLGKDREKGTQNRF---RKYAGLFFYPLAHG 588
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 324 AVLFEGPPGTGKTSCARVIANQA 346
+VL EGPP +GKT+ A IA ++
Sbjct: 65 SVLLEGPPHSGKTALAAKIAEES 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,452,868
Number of Sequences: 62578
Number of extensions: 605951
Number of successful extensions: 1623
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1445
Number of HSP's gapped (non-prelim): 91
length of query: 567
length of database: 14,973,337
effective HSP length: 104
effective length of query: 463
effective length of database: 8,465,225
effective search space: 3919399175
effective search space used: 3919399175
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)