Query 047219
Match_columns 567
No_of_seqs 565 out of 3751
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 08:56:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 6E-45 1.3E-49 369.2 22.0 225 272-511 143-375 (406)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.2E-43 2.6E-48 382.4 24.7 260 272-555 426-690 (693)
3 KOG0733 Nuclear AAA ATPase (VC 100.0 9.1E-41 2E-45 355.3 23.5 264 272-551 503-781 (802)
4 TIGR01243 CDC48 AAA family ATP 100.0 1.9E-40 4E-45 380.9 26.7 367 109-514 14-402 (733)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 2.4E-39 5.2E-44 344.5 21.7 224 275-514 185-417 (802)
6 KOG0736 Peroxisome assembly fa 100.0 6.8E-39 1.5E-43 348.3 25.2 292 242-555 640-948 (953)
7 KOG0738 AAA+-type ATPase [Post 100.0 2.7E-38 5.8E-43 322.5 21.8 228 273-516 205-440 (491)
8 KOG0734 AAA+-type ATPase conta 100.0 1.4E-37 3E-42 326.6 18.5 222 272-509 296-522 (752)
9 KOG0727 26S proteasome regulat 100.0 5E-36 1.1E-40 290.8 18.9 225 272-511 147-379 (408)
10 KOG0739 AAA+-type ATPase [Post 100.0 1.6E-35 3.4E-40 293.1 13.6 225 272-512 125-354 (439)
11 KOG0737 AAA+-type ATPase [Post 100.0 7.1E-35 1.5E-39 297.5 18.6 228 274-515 86-318 (386)
12 KOG0728 26S proteasome regulat 100.0 2.1E-34 4.6E-39 279.2 18.8 224 273-511 140-371 (404)
13 COG1223 Predicted ATPase (AAA+ 100.0 2.5E-34 5.4E-39 280.2 19.3 210 272-500 113-326 (368)
14 KOG0726 26S proteasome regulat 100.0 9E-35 2E-39 286.9 13.8 225 272-511 177-409 (440)
15 KOG0735 AAA+-type ATPase [Post 100.0 8.4E-34 1.8E-38 306.2 22.0 224 277-515 664-892 (952)
16 KOG0731 AAA+-type ATPase conta 100.0 7.6E-34 1.6E-38 315.0 22.1 224 272-511 303-536 (774)
17 KOG0652 26S proteasome regulat 100.0 1.2E-33 2.6E-38 275.4 15.9 227 272-513 163-397 (424)
18 PTZ00454 26S protease regulato 100.0 1.3E-32 2.8E-37 293.6 23.8 224 273-511 138-369 (398)
19 KOG0729 26S proteasome regulat 100.0 2.6E-33 5.6E-38 273.8 16.2 224 272-510 169-400 (435)
20 TIGR01243 CDC48 AAA family ATP 100.0 5.9E-32 1.3E-36 310.7 24.7 269 273-556 446-727 (733)
21 COG0464 SpoVK ATPases of the A 100.0 7.9E-32 1.7E-36 297.0 23.5 226 273-513 235-467 (494)
22 PRK03992 proteasome-activating 100.0 2.1E-31 4.6E-36 284.7 22.8 224 273-511 124-355 (389)
23 KOG0730 AAA+-type ATPase [Post 100.0 3.3E-31 7.1E-36 286.4 20.8 360 117-511 34-404 (693)
24 COG0465 HflB ATP-dependent Zn 100.0 2.7E-31 5.9E-36 290.3 18.3 224 273-512 143-374 (596)
25 PTZ00361 26 proteosome regulat 100.0 8.9E-31 1.9E-35 281.4 20.5 224 273-511 176-407 (438)
26 TIGR01241 FtsH_fam ATP-depende 100.0 7.1E-30 1.5E-34 281.4 23.7 223 272-510 47-277 (495)
27 CHL00195 ycf46 Ycf46; Provisio 100.0 2.7E-29 5.8E-34 273.7 24.4 217 274-510 222-446 (489)
28 TIGR01242 26Sp45 26S proteasom 100.0 6.2E-29 1.3E-33 263.9 23.1 224 273-511 115-346 (364)
29 TIGR03689 pup_AAA proteasome A 100.0 5.6E-29 1.2E-33 271.0 21.5 227 272-509 174-411 (512)
30 KOG0732 AAA+-type ATPase conta 100.0 2.3E-29 4.9E-34 285.8 18.7 232 273-514 258-495 (1080)
31 KOG0651 26S proteasome regulat 100.0 5.3E-30 1.2E-34 255.6 11.4 219 273-506 125-351 (388)
32 KOG0740 AAA+-type ATPase [Post 100.0 3.3E-29 7.1E-34 264.2 17.1 260 273-548 146-413 (428)
33 COG3829 RocR Transcriptional r 100.0 3.6E-29 7.9E-34 267.0 16.7 306 221-566 197-547 (560)
34 CHL00176 ftsH cell division pr 100.0 3.6E-28 7.7E-33 272.5 23.9 223 273-511 176-406 (638)
35 PLN00020 ribulose bisphosphate 99.9 1.4E-26 3.1E-31 239.1 23.2 220 275-512 110-355 (413)
36 COG2204 AtoC Response regulato 99.9 8.6E-27 1.9E-31 249.3 15.4 265 277-566 138-444 (464)
37 PRK10733 hflB ATP-dependent me 99.9 8.1E-26 1.8E-30 255.5 21.6 221 275-511 147-375 (644)
38 KOG0741 AAA+-type ATPase [Post 99.9 6.6E-26 1.4E-30 238.7 14.1 230 274-516 213-463 (744)
39 COG3604 FhlA Transcriptional r 99.9 7.4E-26 1.6E-30 238.8 13.3 266 275-566 218-533 (550)
40 CHL00206 ycf2 Ycf2; Provisiona 99.9 2E-25 4.3E-30 263.0 17.3 184 315-511 1623-1860(2281)
41 CHL00181 cbbX CbbX; Provisiona 99.9 3.9E-21 8.5E-26 197.5 22.7 223 279-515 22-261 (287)
42 TIGR02880 cbbX_cfxQ probable R 99.9 6.6E-21 1.4E-25 195.8 22.6 222 280-515 22-260 (284)
43 TIGR02974 phageshock_pspF psp 99.9 8.4E-22 1.8E-26 206.3 14.1 256 282-566 1-319 (329)
44 TIGR02881 spore_V_K stage V sp 99.9 1.2E-20 2.5E-25 191.7 21.9 222 279-515 5-245 (261)
45 COG2256 MGS1 ATPase related to 99.9 1.4E-20 3E-25 194.9 18.1 226 274-564 18-267 (436)
46 PRK11608 pspF phage shock prot 99.8 5.7E-21 1.2E-25 200.0 13.9 259 279-566 5-313 (326)
47 PRK10820 DNA-binding transcrip 99.8 8.5E-21 1.9E-25 210.2 14.0 262 275-566 199-500 (520)
48 TIGR02329 propionate_PrpR prop 99.8 5.3E-21 1.1E-25 210.9 12.1 261 275-566 207-517 (526)
49 PRK05022 anaerobic nitric oxid 99.8 8.6E-21 1.9E-25 210.0 13.4 260 278-566 185-495 (509)
50 PRK15424 propionate catabolism 99.8 1.3E-20 2.8E-25 207.7 11.4 259 276-566 215-524 (538)
51 PF05496 RuvB_N: Holliday junc 99.8 1.8E-19 3.9E-24 175.9 16.4 196 273-503 17-224 (233)
52 PRK11388 DNA-binding transcrip 99.8 2.4E-20 5.2E-25 212.0 11.5 261 276-566 321-618 (638)
53 KOG0744 AAA+-type ATPase [Post 99.8 7.2E-20 1.6E-24 184.1 13.5 195 275-476 137-342 (423)
54 TIGR01817 nifA Nif-specific re 99.8 2.4E-20 5.1E-25 207.8 10.2 267 274-566 190-517 (534)
55 PF00004 AAA: ATPase family as 99.8 3.3E-19 7.2E-24 160.3 14.2 130 325-460 1-132 (132)
56 PRK15429 formate hydrogenlyase 99.8 3.5E-19 7.6E-24 203.9 16.0 261 276-566 372-671 (686)
57 KOG0742 AAA+-type ATPase [Post 99.8 1.2E-17 2.6E-22 172.3 23.4 208 275-504 350-588 (630)
58 COG3283 TyrR Transcriptional r 99.8 3.7E-19 8E-24 180.9 12.0 258 273-559 197-489 (511)
59 TIGR02915 PEP_resp_reg putativ 99.8 9.2E-19 2E-23 190.6 12.9 264 278-566 137-432 (445)
60 PRK10923 glnG nitrogen regulat 99.8 7.6E-19 1.6E-23 192.6 9.6 261 278-566 136-456 (469)
61 KOG2028 ATPase related to the 99.8 1.2E-17 2.6E-22 170.3 16.0 212 319-565 159-398 (554)
62 COG2255 RuvB Holliday junction 99.8 3E-17 6.4E-22 163.4 17.3 194 275-503 21-226 (332)
63 COG1221 PspF Transcriptional r 99.7 3.1E-18 6.6E-23 180.9 10.8 205 273-505 71-306 (403)
64 TIGR00635 ruvB Holliday juncti 99.7 7.4E-17 1.6E-21 167.0 20.5 196 278-507 2-208 (305)
65 KOG0743 AAA+-type ATPase [Post 99.7 1.6E-17 3.5E-22 174.8 14.8 203 275-500 196-412 (457)
66 PRK15115 response regulator Gl 99.7 6.1E-18 1.3E-22 184.1 10.8 258 281-566 135-425 (444)
67 PRK11361 acetoacetate metaboli 99.7 5.7E-18 1.2E-22 184.8 10.6 261 278-566 141-444 (457)
68 PRK00080 ruvB Holliday junctio 99.7 2.1E-16 4.5E-21 165.8 21.0 198 276-507 21-229 (328)
69 TIGR00763 lon ATP-dependent pr 99.7 2.1E-16 4.5E-21 183.0 20.8 204 280-514 320-560 (775)
70 TIGR01818 ntrC nitrogen regula 99.7 2E-17 4.4E-22 180.9 10.3 260 279-566 133-453 (463)
71 PRK07003 DNA polymerase III su 99.7 5.8E-16 1.3E-20 173.2 20.8 190 275-505 11-225 (830)
72 PRK12323 DNA polymerase III su 99.7 4.3E-16 9.3E-21 172.3 18.4 191 274-505 10-230 (700)
73 TIGR02639 ClpA ATP-dependent C 99.7 5.7E-16 1.2E-20 178.4 18.7 188 277-493 179-385 (731)
74 PF00158 Sigma54_activat: Sigm 99.7 1.1E-17 2.4E-22 158.9 3.7 148 282-458 1-167 (168)
75 PRK14956 DNA polymerase III su 99.7 1.7E-15 3.7E-20 163.7 21.0 190 274-504 12-226 (484)
76 COG3284 AcoR Transcriptional a 99.7 9E-17 2E-21 175.2 11.1 254 283-567 316-593 (606)
77 TIGR02902 spore_lonB ATP-depen 99.7 5.8E-16 1.3E-20 171.9 17.7 211 274-508 59-312 (531)
78 COG0542 clpA ATP-binding subun 99.7 2.2E-15 4.7E-20 169.7 20.0 234 243-508 454-754 (786)
79 PRK10365 transcriptional regul 99.7 1.3E-16 2.8E-21 173.3 9.6 261 281-566 140-432 (441)
80 PRK07940 DNA polymerase III su 99.7 2.6E-15 5.7E-20 160.5 19.3 196 278-504 3-218 (394)
81 PLN03025 replication factor C 99.7 5.9E-15 1.3E-19 154.3 21.5 186 274-505 7-202 (319)
82 PRK14949 DNA polymerase III su 99.7 3.5E-15 7.6E-20 169.7 21.1 196 275-505 11-225 (944)
83 PRK14962 DNA polymerase III su 99.7 3E-15 6.4E-20 163.6 19.4 177 275-491 9-210 (472)
84 PRK13342 recombination factor 99.7 3.9E-15 8.4E-20 160.9 20.0 179 275-504 7-200 (413)
85 KOG0736 Peroxisome assembly fa 99.7 5.2E-15 1.1E-19 162.9 20.4 187 320-514 429-619 (953)
86 TIGR03345 VI_ClpV1 type VI sec 99.7 2E-15 4.3E-20 175.6 18.1 187 277-492 184-389 (852)
87 PRK14958 DNA polymerase III su 99.6 4.9E-15 1.1E-19 163.4 19.3 190 275-505 11-225 (509)
88 PRK14961 DNA polymerase III su 99.6 9.2E-15 2E-19 155.4 20.2 190 275-505 11-225 (363)
89 PHA02544 44 clamp loader, smal 99.6 1.2E-14 2.7E-19 151.2 20.3 162 272-475 13-174 (316)
90 PRK07994 DNA polymerase III su 99.6 9.8E-15 2.1E-19 163.6 20.7 189 275-504 11-224 (647)
91 PRK14964 DNA polymerase III su 99.6 8.4E-15 1.8E-19 159.8 19.2 190 275-505 8-222 (491)
92 PRK11034 clpA ATP-dependent Cl 99.6 1E-14 2.2E-19 167.0 20.8 200 278-506 184-407 (758)
93 PRK14960 DNA polymerase III su 99.6 1.1E-14 2.3E-19 161.6 19.9 190 275-505 10-224 (702)
94 KOG0989 Replication factor C, 99.6 5E-15 1.1E-19 149.0 15.5 190 274-502 30-229 (346)
95 PRK11034 clpA ATP-dependent Cl 99.6 4E-15 8.8E-20 170.3 16.6 241 243-512 421-719 (758)
96 PRK06645 DNA polymerase III su 99.6 2.3E-14 4.9E-19 157.5 21.4 197 274-505 15-234 (507)
97 PF00308 Bac_DnaA: Bacterial d 99.6 3.2E-14 7E-19 140.9 20.2 199 275-505 3-213 (219)
98 PRK00149 dnaA chromosomal repl 99.6 1.1E-14 2.4E-19 159.1 18.2 172 321-505 147-327 (450)
99 PRK08691 DNA polymerase III su 99.6 1.6E-14 3.4E-19 161.5 19.5 197 274-505 10-225 (709)
100 PRK10865 protein disaggregatio 99.6 7.6E-15 1.7E-19 171.1 17.5 171 277-476 175-356 (857)
101 TIGR00362 DnaA chromosomal rep 99.6 1.7E-14 3.8E-19 155.5 18.9 172 321-506 135-316 (405)
102 TIGR03346 chaperone_ClpB ATP-d 99.6 1.1E-14 2.3E-19 170.4 17.8 238 242-508 527-825 (852)
103 PRK12402 replication factor C 99.6 4.4E-14 9.5E-19 147.9 20.6 192 275-506 10-229 (337)
104 KOG0735 AAA+-type ATPase [Post 99.6 2.7E-14 5.9E-19 156.0 18.7 188 319-509 428-625 (952)
105 PRK14963 DNA polymerase III su 99.6 6.5E-14 1.4E-18 154.3 21.8 177 275-491 9-209 (504)
106 TIGR02639 ClpA ATP-dependent C 99.6 1.3E-14 2.8E-19 167.2 17.0 236 243-508 417-711 (731)
107 PRK10865 protein disaggregatio 99.6 3E-14 6.4E-19 166.2 20.2 237 242-507 530-827 (857)
108 TIGR03420 DnaA_homol_Hda DnaA 99.6 7.7E-14 1.7E-18 137.9 20.0 186 275-506 10-207 (226)
109 PRK13341 recombination factor 99.6 2.9E-14 6.2E-19 162.6 19.1 176 274-503 22-217 (725)
110 CHL00095 clpC Clp protease ATP 99.6 1.5E-14 3.2E-19 168.7 17.1 187 278-494 177-382 (821)
111 PRK05563 DNA polymerase III su 99.6 6.7E-14 1.5E-18 156.3 21.5 189 275-504 11-224 (559)
112 PRK12422 chromosomal replicati 99.6 2.6E-14 5.7E-19 155.3 17.5 169 321-504 140-317 (445)
113 PRK04195 replication factor C 99.6 5.2E-14 1.1E-18 155.1 20.0 188 274-506 8-205 (482)
114 PRK14951 DNA polymerase III su 99.6 4.8E-14 1E-18 157.7 19.6 196 275-505 11-230 (618)
115 TIGR02640 gas_vesic_GvpN gas v 99.6 4.3E-14 9.3E-19 143.8 17.6 146 320-474 19-198 (262)
116 TIGR03346 chaperone_ClpB ATP-d 99.6 3.6E-14 7.7E-19 166.0 18.8 187 277-492 170-375 (852)
117 PRK07764 DNA polymerase III su 99.6 7.4E-14 1.6E-18 161.1 21.0 189 274-503 9-224 (824)
118 PRK14952 DNA polymerase III su 99.6 1.2E-13 2.5E-18 154.1 21.6 188 275-503 8-222 (584)
119 PRK08084 DNA replication initi 99.6 1.5E-13 3.3E-18 137.5 20.3 186 273-503 15-212 (235)
120 PF05673 DUF815: Protein of un 99.6 2.8E-13 6E-18 134.2 21.2 192 273-503 20-244 (249)
121 PRK05342 clpX ATP-dependent pr 99.6 5.1E-14 1.1E-18 151.4 17.2 220 281-512 72-382 (412)
122 PRK14086 dnaA chromosomal repl 99.6 4.2E-14 9.1E-19 156.8 17.0 170 322-505 314-493 (617)
123 PRK08451 DNA polymerase III su 99.6 1.6E-13 3.6E-18 151.0 21.3 190 275-505 9-223 (535)
124 PRK14957 DNA polymerase III su 99.6 1.6E-13 3.5E-18 151.7 21.0 188 275-503 11-223 (546)
125 TIGR02397 dnaX_nterm DNA polym 99.6 1.8E-13 3.8E-18 144.5 20.5 189 274-503 8-221 (355)
126 TIGR00390 hslU ATP-dependent p 99.6 3.8E-14 8.3E-19 150.2 15.0 179 280-471 12-343 (441)
127 PRK05201 hslU ATP-dependent pr 99.6 3.7E-14 8E-19 150.4 14.9 179 280-471 15-345 (443)
128 PRK08903 DnaA regulatory inact 99.6 2.5E-13 5.5E-18 134.8 20.1 183 273-505 11-204 (227)
129 PRK14965 DNA polymerase III su 99.6 1E-13 2.2E-18 155.4 19.0 187 275-502 11-222 (576)
130 PRK14969 DNA polymerase III su 99.6 1.1E-13 2.5E-18 153.4 19.2 196 275-505 11-225 (527)
131 COG0464 SpoVK ATPases of the A 99.6 1.3E-13 2.8E-18 152.5 19.6 197 299-512 3-204 (494)
132 TIGR03345 VI_ClpV1 type VI sec 99.6 9.3E-14 2E-18 161.7 18.7 237 243-510 529-832 (852)
133 TIGR02928 orc1/cdc6 family rep 99.6 4.5E-13 9.9E-18 142.1 22.4 208 275-508 10-254 (365)
134 CHL00095 clpC Clp protease ATP 99.5 2.1E-13 4.5E-18 159.1 20.6 241 241-510 470-783 (821)
135 PRK06893 DNA replication initi 99.5 4.1E-13 8.8E-18 134.0 19.4 157 323-503 40-206 (229)
136 CHL00081 chlI Mg-protoporyphyr 99.5 2.2E-14 4.8E-19 150.4 10.7 178 273-473 10-231 (350)
137 PRK06647 DNA polymerase III su 99.5 4.2E-13 9.1E-18 149.6 21.5 196 274-504 10-224 (563)
138 PRK09111 DNA polymerase III su 99.5 3.1E-13 6.7E-18 151.4 20.4 195 275-504 19-237 (598)
139 PRK14087 dnaA chromosomal repl 99.5 9.6E-14 2.1E-18 151.3 16.0 171 321-505 140-324 (450)
140 PRK14959 DNA polymerase III su 99.5 1.8E-13 3.9E-18 152.3 18.4 181 274-491 10-212 (624)
141 COG0466 Lon ATP-dependent Lon 99.5 1.7E-13 3.8E-18 150.8 17.7 171 280-474 323-508 (782)
142 PRK07133 DNA polymerase III su 99.5 3.6E-13 7.8E-18 152.0 20.5 193 274-503 12-222 (725)
143 PRK06305 DNA polymerase III su 99.5 4.8E-13 1E-17 145.9 20.8 177 275-491 12-214 (451)
144 PRK05896 DNA polymerase III su 99.5 3.8E-13 8.3E-18 149.1 20.1 188 275-503 11-223 (605)
145 PRK14088 dnaA chromosomal repl 99.5 2.1E-13 4.5E-18 148.5 17.8 171 322-505 130-310 (440)
146 TIGR00382 clpX endopeptidase C 99.5 1.8E-13 3.9E-18 146.6 16.5 218 280-509 77-385 (413)
147 PRK10787 DNA-binding ATP-depen 99.5 2.2E-13 4.9E-18 157.0 18.0 203 280-514 322-561 (784)
148 PRK05642 DNA replication initi 99.5 8.6E-13 1.9E-17 132.0 19.7 159 322-504 45-212 (234)
149 COG2812 DnaX DNA polymerase II 99.5 2.5E-13 5.3E-18 148.1 16.7 198 275-507 11-227 (515)
150 PRK14953 DNA polymerase III su 99.5 6.6E-13 1.4E-17 145.8 19.6 195 275-504 11-224 (486)
151 PRK00411 cdc6 cell division co 99.5 1.6E-12 3.5E-17 139.3 22.1 207 275-508 25-262 (394)
152 TIGR02903 spore_lon_C ATP-depe 99.5 1.2E-12 2.5E-17 148.0 21.8 193 275-490 149-386 (615)
153 PTZ00112 origin recognition co 99.5 1.6E-12 3.5E-17 146.4 22.5 203 276-505 751-983 (1164)
154 PRK14955 DNA polymerase III su 99.5 1.8E-13 3.9E-18 147.2 14.4 187 274-501 10-229 (397)
155 PRK14948 DNA polymerase III su 99.5 1.3E-12 2.7E-17 147.3 21.8 183 275-491 11-214 (620)
156 PRK08727 hypothetical protein; 99.5 2.1E-12 4.5E-17 129.2 21.0 153 322-502 41-203 (233)
157 COG0593 DnaA ATPase involved i 99.5 2.6E-13 5.6E-18 144.1 14.9 172 320-505 111-291 (408)
158 PRK14970 DNA polymerase III su 99.5 1.9E-12 4.1E-17 137.8 20.5 187 274-501 11-210 (367)
159 PRK14954 DNA polymerase III su 99.5 1.6E-12 3.6E-17 145.8 20.9 178 274-491 10-220 (620)
160 PRK14950 DNA polymerase III su 99.5 1.5E-12 3.2E-17 146.7 20.2 189 274-503 10-224 (585)
161 PRK00440 rfc replication facto 99.5 1.8E-12 4E-17 134.5 19.5 180 274-491 11-195 (319)
162 KOG2004 Mitochondrial ATP-depe 99.5 1.2E-12 2.6E-17 143.5 17.2 171 280-474 411-596 (906)
163 PRK05564 DNA polymerase III su 99.5 4.2E-12 9.1E-17 132.4 19.7 181 278-496 2-187 (313)
164 PRK13407 bchI magnesium chelat 99.4 1.4E-13 3E-18 144.1 8.5 178 275-473 3-215 (334)
165 PHA02244 ATPase-like protein 99.4 8.6E-13 1.9E-17 138.2 13.3 140 319-471 116-270 (383)
166 PRK06620 hypothetical protein; 99.4 4.1E-12 8.9E-17 125.5 17.2 140 323-503 45-192 (214)
167 PRK14971 DNA polymerase III su 99.4 7.3E-12 1.6E-16 141.1 20.9 186 275-501 12-223 (614)
168 PRK09112 DNA polymerase III su 99.4 9.8E-12 2.1E-16 131.4 19.4 194 274-502 17-242 (351)
169 PRK07471 DNA polymerase III su 99.4 6.1E-12 1.3E-16 133.6 17.9 192 275-501 14-239 (365)
170 TIGR01650 PD_CobS cobaltochela 99.4 7.8E-13 1.7E-17 137.0 9.9 147 321-475 63-234 (327)
171 TIGR00678 holB DNA polymerase 99.4 9.3E-12 2E-16 120.1 16.8 152 319-491 11-183 (188)
172 PRK08058 DNA polymerase III su 99.4 1.4E-11 3E-16 129.5 18.7 170 278-488 3-194 (329)
173 TIGR02030 BchI-ChlI magnesium 99.4 2.6E-12 5.5E-17 134.8 12.7 175 278-473 2-218 (337)
174 PF14532 Sigma54_activ_2: Sigm 99.4 5.5E-13 1.2E-17 122.4 6.7 130 283-462 1-137 (138)
175 TIGR02442 Cob-chelat-sub cobal 99.4 2E-12 4.3E-17 146.8 12.5 175 278-473 2-213 (633)
176 cd00009 AAA The AAA+ (ATPases 99.4 1.3E-11 2.9E-16 111.0 15.4 125 320-459 17-150 (151)
177 COG2607 Predicted ATPase (AAA+ 99.4 3.3E-11 7.2E-16 117.9 18.5 194 272-504 52-277 (287)
178 PRK07399 DNA polymerase III su 99.4 4.9E-11 1.1E-15 124.3 20.6 189 278-502 2-223 (314)
179 smart00350 MCM minichromosome 99.3 1.5E-12 3.4E-17 144.2 7.6 181 281-475 204-401 (509)
180 COG1474 CDC6 Cdc6-related prot 99.3 9.1E-11 2E-15 124.6 20.0 174 275-476 12-205 (366)
181 COG1239 ChlI Mg-chelatase subu 99.3 1E-11 2.3E-16 130.6 11.7 179 276-475 13-233 (423)
182 PRK09087 hypothetical protein; 99.3 5.5E-11 1.2E-15 118.4 15.5 142 322-502 44-194 (226)
183 COG0470 HolB ATPase involved i 99.3 3.2E-11 6.9E-16 125.3 14.4 157 280-471 1-178 (325)
184 PF01078 Mg_chelatase: Magnesi 99.3 5.9E-13 1.3E-17 129.3 0.8 147 278-463 1-204 (206)
185 KOG0991 Replication factor C, 99.3 3.1E-11 6.7E-16 117.5 12.1 189 274-505 21-216 (333)
186 PRK05707 DNA polymerase III su 99.3 1.1E-10 2.5E-15 122.3 17.2 158 319-493 19-197 (328)
187 COG0542 clpA ATP-binding subun 99.3 6.1E-11 1.3E-15 134.2 15.5 171 277-476 167-348 (786)
188 PF13177 DNA_pol3_delta2: DNA 99.3 5.9E-11 1.3E-15 112.2 13.0 141 284-461 1-161 (162)
189 PRK11331 5-methylcytosine-spec 99.3 1.5E-10 3.3E-15 124.4 17.3 148 279-460 174-357 (459)
190 COG1224 TIP49 DNA helicase TIP 99.2 3.6E-10 7.7E-15 116.1 18.6 90 389-493 292-397 (450)
191 COG1219 ClpX ATP-dependent pro 99.2 2.2E-11 4.7E-16 123.3 9.6 135 280-426 61-203 (408)
192 PRK13531 regulatory ATPase Rav 99.2 2.1E-11 4.5E-16 132.0 9.9 162 281-472 21-192 (498)
193 TIGR02031 BchD-ChlD magnesium 99.2 2.1E-11 4.6E-16 137.1 9.4 149 322-474 16-174 (589)
194 COG0714 MoxR-like ATPases [Gen 99.2 2.7E-11 5.8E-16 127.3 8.4 144 321-472 42-201 (329)
195 PF06068 TIP49: TIP49 C-termin 99.2 9.3E-10 2E-14 114.7 19.3 86 389-489 279-380 (398)
196 PF07728 AAA_5: AAA domain (dy 99.2 1.8E-12 3.9E-17 118.6 -0.8 109 324-452 1-139 (139)
197 TIGR00368 Mg chelatase-related 99.2 6.6E-11 1.4E-15 130.3 11.0 191 276-513 188-424 (499)
198 TIGR00764 lon_rel lon-related 99.2 1E-09 2.2E-14 123.8 20.0 55 272-349 10-64 (608)
199 COG1220 HslU ATP-dependent pro 99.2 1.6E-10 3.4E-15 117.9 11.3 116 390-505 252-382 (444)
200 PF07724 AAA_2: AAA domain (Cd 99.2 1E-10 2.2E-15 111.6 9.1 115 321-440 2-129 (171)
201 PRK08769 DNA polymerase III su 99.2 1.3E-09 2.8E-14 113.7 18.1 165 319-499 23-208 (319)
202 smart00382 AAA ATPases associa 99.1 4.6E-10 9.9E-15 99.8 12.0 131 322-461 2-147 (148)
203 PRK07993 DNA polymerase III su 99.1 1.7E-09 3.7E-14 113.7 18.2 161 319-497 21-202 (334)
204 PRK06871 DNA polymerase III su 99.1 3.1E-09 6.8E-14 111.0 19.2 137 319-473 21-178 (325)
205 PTZ00111 DNA replication licen 99.1 1.5E-10 3.2E-15 132.8 9.7 153 320-474 490-657 (915)
206 PF07726 AAA_3: ATPase family 99.1 1.3E-11 2.7E-16 111.0 0.4 121 324-452 1-129 (131)
207 PRK13765 ATP-dependent proteas 99.1 4.7E-10 1E-14 126.5 10.8 52 273-347 24-75 (637)
208 PRK04132 replication factor C 99.1 2.4E-09 5.1E-14 123.6 15.9 150 321-491 563-723 (846)
209 COG4650 RtcR Sigma54-dependent 99.0 8E-11 1.7E-15 117.9 3.2 153 319-474 205-372 (531)
210 PRK06964 DNA polymerase III su 99.0 5.7E-09 1.2E-13 109.8 17.3 141 319-473 18-203 (342)
211 COG0606 Predicted ATPase with 99.0 1.2E-09 2.5E-14 116.9 11.3 152 276-466 175-384 (490)
212 PRK06090 DNA polymerase III su 99.0 5.5E-09 1.2E-13 108.9 16.1 137 319-472 22-178 (319)
213 KOG1969 DNA replication checkp 99.0 1.6E-08 3.4E-13 112.1 19.9 207 272-505 263-512 (877)
214 TIGR03015 pepcterm_ATPase puta 99.0 1.2E-08 2.6E-13 103.4 17.4 179 322-511 43-249 (269)
215 KOG0745 Putative ATP-dependent 99.0 4.7E-09 1E-13 110.2 13.9 99 322-426 226-332 (564)
216 PRK09862 putative ATP-dependen 99.0 8.5E-10 1.8E-14 121.2 8.4 161 277-464 188-391 (506)
217 TIGR00602 rad24 checkpoint pro 99.0 2.7E-08 5.9E-13 112.1 19.4 203 273-507 77-327 (637)
218 KOG1051 Chaperone HSP104 and r 99.0 9.7E-09 2.1E-13 118.0 15.7 167 278-474 560-784 (898)
219 KOG0990 Replication factor C, 99.0 3.5E-09 7.6E-14 107.7 10.8 192 272-506 33-235 (360)
220 PRK08116 hypothetical protein; 98.9 6.3E-09 1.4E-13 106.3 12.1 135 321-473 113-259 (268)
221 PF02359 CDC48_N: Cell divisio 98.9 6.5E-10 1.4E-14 94.1 3.5 70 107-185 11-86 (87)
222 KOG1942 DNA helicase, TBP-inte 98.9 6.7E-08 1.5E-12 97.2 17.8 85 389-488 297-398 (456)
223 KOG2035 Replication factor C, 98.9 6.8E-08 1.5E-12 96.6 17.7 175 277-491 10-220 (351)
224 smart00763 AAA_PrkA PrkA AAA d 98.9 1.3E-08 2.8E-13 106.9 12.7 84 387-475 235-328 (361)
225 PRK12377 putative replication 98.9 1E-08 2.3E-13 103.3 11.5 125 322-462 101-236 (248)
226 PRK08181 transposase; Validate 98.8 3.1E-08 6.7E-13 101.1 13.1 127 321-464 105-245 (269)
227 PRK07952 DNA replication prote 98.8 2.4E-08 5.2E-13 100.5 11.6 125 322-462 99-235 (244)
228 PRK06835 DNA replication prote 98.8 2.2E-08 4.7E-13 105.1 11.7 127 322-464 183-320 (329)
229 PF01637 Arch_ATPase: Archaeal 98.8 4.5E-08 9.9E-13 95.9 12.3 184 283-498 2-232 (234)
230 PRK05917 DNA polymerase III su 98.8 1.2E-07 2.7E-12 97.3 15.5 126 319-461 16-154 (290)
231 PRK08699 DNA polymerase III su 98.7 1E-07 2.3E-12 99.9 13.8 140 319-472 18-183 (325)
232 KOG0478 DNA replication licens 98.7 5.4E-08 1.2E-12 107.2 11.8 145 321-474 461-626 (804)
233 PRK06526 transposase; Provisio 98.7 2.8E-08 6.1E-13 100.7 8.0 78 320-403 96-174 (254)
234 PRK07132 DNA polymerase III su 98.7 7.9E-07 1.7E-11 92.1 18.8 151 319-490 15-176 (299)
235 KOG0480 DNA replication licens 98.7 2E-08 4.4E-13 109.7 6.7 208 278-505 343-571 (764)
236 COG1484 DnaC DNA replication p 98.7 1.3E-07 2.8E-12 95.9 10.9 77 321-403 104-182 (254)
237 PRK08939 primosomal protein Dn 98.6 1.3E-07 2.9E-12 98.3 10.8 75 321-401 155-230 (306)
238 PRK07276 DNA polymerase III su 98.6 1.6E-06 3.4E-11 89.4 18.4 163 319-502 21-199 (290)
239 PF05621 TniB: Bacterial TniB 98.6 9.7E-07 2.1E-11 90.5 16.6 207 280-510 34-271 (302)
240 COG1241 MCM2 Predicted ATPase 98.6 2.2E-07 4.9E-12 104.7 12.9 177 280-475 286-484 (682)
241 KOG2227 Pre-initiation complex 98.6 1E-06 2.2E-11 94.0 16.8 197 280-505 150-373 (529)
242 KOG1514 Origin recognition com 98.6 1.6E-06 3.5E-11 96.3 18.9 182 321-513 421-633 (767)
243 KOG2680 DNA helicase TIP49, TB 98.6 1.5E-06 3.3E-11 87.9 17.1 108 389-511 289-412 (454)
244 PF01695 IstB_IS21: IstB-like 98.6 3.5E-08 7.7E-13 94.7 5.0 76 320-401 45-121 (178)
245 KOG0741 AAA+-type ATPase [Post 98.6 8.9E-07 1.9E-11 95.3 15.4 144 320-472 536-684 (744)
246 PF13173 AAA_14: AAA domain 98.6 4.5E-07 9.6E-12 82.1 10.8 120 323-465 3-126 (128)
247 PRK13406 bchD magnesium chelat 98.6 2.4E-07 5.3E-12 104.0 10.3 139 323-465 26-173 (584)
248 PRK06921 hypothetical protein; 98.5 3.2E-07 6.9E-12 93.7 9.7 73 321-399 116-188 (266)
249 PF12775 AAA_7: P-loop contain 98.5 4.3E-07 9.4E-12 93.0 10.3 146 320-477 31-196 (272)
250 PRK09183 transposase/IS protei 98.5 3E-07 6.6E-12 93.5 9.0 79 320-403 100-179 (259)
251 PF03215 Rad17: Rad17 cell cyc 98.5 6.4E-06 1.4E-10 91.4 19.7 201 272-509 11-269 (519)
252 PF12774 AAA_6: Hydrolytic ATP 98.5 1.2E-06 2.5E-11 87.6 12.1 136 321-471 31-177 (231)
253 PF05729 NACHT: NACHT domain 98.4 3E-06 6.4E-11 78.7 13.1 147 324-476 2-165 (166)
254 PRK05818 DNA polymerase III su 98.4 2.3E-06 4.9E-11 86.4 12.3 128 319-461 4-147 (261)
255 PF00493 MCM: MCM2/3/5 family 98.4 3.2E-08 6.9E-13 104.2 -2.5 147 320-476 55-223 (331)
256 KOG0482 DNA replication licens 98.4 3.8E-07 8.2E-12 97.5 5.3 179 281-473 343-538 (721)
257 KOG2170 ATPase of the AAA+ sup 98.3 2.6E-05 5.7E-10 79.3 16.7 136 280-442 82-226 (344)
258 KOG0477 DNA replication licens 98.3 5.4E-07 1.2E-11 98.4 4.3 160 281-458 450-629 (854)
259 PF03969 AFG1_ATPase: AFG1-lik 98.2 2.2E-05 4.8E-10 83.5 15.4 127 319-465 59-206 (362)
260 PF13401 AAA_22: AAA domain; P 98.2 6.6E-06 1.4E-10 73.8 9.0 79 322-401 4-100 (131)
261 cd01120 RecA-like_NTPases RecA 98.2 1.2E-05 2.5E-10 74.1 10.5 35 325-362 2-36 (165)
262 KOG0481 DNA replication licens 98.1 2E-05 4.3E-10 84.8 12.3 173 281-471 332-524 (729)
263 PF00931 NB-ARC: NB-ARC domain 98.1 5.4E-05 1.2E-09 77.3 14.4 165 320-504 17-206 (287)
264 COG1618 Predicted nucleotide k 98.1 3.8E-05 8.3E-10 71.7 11.6 30 320-349 3-32 (179)
265 PHA00729 NTP-binding motif con 98.1 0.00019 4.1E-09 71.3 16.7 112 322-472 17-138 (226)
266 KOG1051 Chaperone HSP104 and r 98.1 3.3E-05 7.2E-10 89.4 13.0 168 279-475 185-364 (898)
267 PF14516 AAA_35: AAA-like doma 98.1 0.00025 5.4E-09 74.8 18.5 178 320-506 29-245 (331)
268 COG5271 MDN1 AAA ATPase contai 98.0 1.8E-05 3.9E-10 93.8 10.0 139 320-478 1541-1707(4600)
269 KOG1970 Checkpoint RAD17-RFC c 98.0 0.00013 2.8E-09 79.6 15.9 208 273-507 75-319 (634)
270 TIGR02688 conserved hypothetic 98.0 0.00019 4.1E-09 77.1 16.1 70 320-405 207-277 (449)
271 TIGR02237 recomb_radB DNA repa 98.0 3.8E-05 8.1E-10 75.1 9.6 42 319-363 9-50 (209)
272 COG3267 ExeA Type II secretory 98.0 0.00067 1.5E-08 67.9 18.2 176 321-508 50-253 (269)
273 PF06309 Torsin: Torsin; Inte 97.9 3.6E-05 7.7E-10 69.4 8.3 55 280-348 25-79 (127)
274 PLN03210 Resistant to P. syrin 97.9 0.00029 6.2E-09 86.0 18.9 54 275-347 179-232 (1153)
275 KOG0479 DNA replication licens 97.9 2.1E-05 4.7E-10 85.6 7.9 159 281-458 302-481 (818)
276 PRK06581 DNA polymerase III su 97.9 0.00075 1.6E-08 67.4 17.6 144 319-478 12-165 (263)
277 COG5271 MDN1 AAA ATPase contai 97.9 9.6E-05 2.1E-09 88.0 11.9 136 319-474 885-1047(4600)
278 cd01124 KaiC KaiC is a circadi 97.8 0.00021 4.6E-09 68.2 11.5 34 325-361 2-35 (187)
279 PF00910 RNA_helicase: RNA hel 97.8 3.3E-05 7.2E-10 67.8 5.2 23 325-347 1-23 (107)
280 KOG2228 Origin recognition com 97.8 0.00018 3.9E-09 74.4 10.9 168 280-474 24-219 (408)
281 PRK09361 radB DNA repair and r 97.7 0.00017 3.6E-09 71.5 10.2 41 319-362 20-60 (225)
282 KOG2543 Origin recognition com 97.7 0.00089 1.9E-08 70.4 15.3 201 280-519 6-245 (438)
283 cd01128 rho_factor Transcripti 97.7 0.00029 6.3E-09 71.3 10.8 88 317-404 11-119 (249)
284 TIGR02012 tigrfam_recA protein 97.7 0.00025 5.5E-09 74.1 10.4 117 319-439 52-190 (321)
285 TIGR01618 phage_P_loop phage n 97.6 0.00018 3.9E-09 71.4 7.6 25 320-344 10-34 (220)
286 PF13604 AAA_30: AAA domain; P 97.6 0.0002 4.3E-09 69.8 7.9 38 321-361 17-54 (196)
287 COG1485 Predicted ATPase [Gene 97.6 0.00055 1.2E-08 71.4 11.4 102 319-440 62-170 (367)
288 PRK09376 rho transcription ter 97.6 0.00033 7.2E-09 74.7 10.0 86 319-405 166-273 (416)
289 PRK14700 recombination factor 97.5 0.00057 1.2E-08 70.2 10.8 122 428-563 5-143 (300)
290 PF05707 Zot: Zonular occluden 97.5 0.00017 3.7E-09 70.0 6.2 68 388-461 79-146 (193)
291 COG1373 Predicted ATPase (AAA+ 97.5 0.00099 2.1E-08 72.1 12.2 121 324-468 39-161 (398)
292 KOG1968 Replication factor C, 97.5 0.00015 3.2E-09 84.7 5.8 160 324-505 359-533 (871)
293 PF07693 KAP_NTPase: KAP famil 97.4 0.0088 1.9E-07 62.3 18.6 30 320-349 18-47 (325)
294 PRK15455 PrkA family serine pr 97.4 0.00018 4E-09 79.8 5.7 56 278-348 74-129 (644)
295 cd01121 Sms Sms (bacterial rad 97.4 0.0011 2.3E-08 71.1 11.4 80 319-402 79-172 (372)
296 cd00983 recA RecA is a bacter 97.4 0.00096 2.1E-08 69.9 10.7 117 319-439 52-190 (325)
297 PRK06067 flagellar accessory p 97.4 0.0011 2.4E-08 66.1 10.7 41 319-362 22-62 (234)
298 PRK08533 flagellar accessory p 97.4 0.0012 2.6E-08 66.1 10.8 40 319-361 21-60 (230)
299 PRK11823 DNA repair protein Ra 97.4 0.0019 4.2E-08 70.8 13.0 80 319-402 77-170 (446)
300 COG4619 ABC-type uncharacteriz 97.4 0.0021 4.6E-08 60.7 11.2 29 319-347 26-54 (223)
301 PRK11889 flhF flagellar biosyn 97.3 0.0021 4.6E-08 68.8 12.3 101 286-401 217-333 (436)
302 PHA02624 large T antigen; Prov 97.3 0.0026 5.7E-08 71.1 13.3 120 319-459 428-560 (647)
303 PRK06762 hypothetical protein; 97.3 0.00096 2.1E-08 62.7 8.5 41 322-368 2-42 (166)
304 PRK10536 hypothetical protein; 97.3 0.002 4.4E-08 65.2 11.1 48 275-345 50-97 (262)
305 PF13207 AAA_17: AAA domain; P 97.3 0.00022 4.7E-09 63.2 3.7 22 325-346 2-23 (121)
306 PRK04296 thymidine kinase; Pro 97.3 0.0016 3.5E-08 63.1 10.1 25 323-347 3-27 (190)
307 PF13671 AAA_33: AAA domain; P 97.3 0.00099 2.1E-08 60.6 8.0 38 325-370 2-39 (143)
308 PRK04841 transcriptional regul 97.3 0.0061 1.3E-07 72.4 16.8 155 320-492 30-218 (903)
309 cd01394 radB RadB. The archaea 97.3 0.0016 3.5E-08 64.1 10.0 41 319-362 16-56 (218)
310 PRK08118 topology modulation p 97.2 0.00065 1.4E-08 64.5 6.7 31 324-360 3-33 (167)
311 cd00046 DEXDc DEAD-like helica 97.2 0.0025 5.4E-08 56.1 10.0 25 323-347 1-25 (144)
312 PRK05973 replicative DNA helic 97.2 0.0027 5.8E-08 63.8 11.2 41 319-362 61-101 (237)
313 PF13191 AAA_16: AAA ATPase do 97.2 0.00029 6.3E-09 66.7 4.0 49 282-348 2-50 (185)
314 PRK07261 topology modulation p 97.2 0.0017 3.8E-08 61.8 9.3 23 324-346 2-24 (171)
315 PHA02774 E1; Provisional 97.2 0.0024 5.1E-08 71.2 11.1 26 322-347 434-459 (613)
316 TIGR00767 rho transcription te 97.2 0.0012 2.7E-08 70.6 8.5 86 319-404 165-271 (415)
317 PRK12723 flagellar biosynthesi 97.2 0.0027 5.9E-08 68.3 11.2 139 320-471 172-332 (388)
318 cd01393 recA_like RecA is a b 97.2 0.0024 5.2E-08 63.0 9.9 44 319-362 16-62 (226)
319 PRK09354 recA recombinase A; P 97.2 0.0022 4.8E-08 67.8 10.1 80 319-402 57-152 (349)
320 PRK00131 aroK shikimate kinase 97.1 0.00049 1.1E-08 64.6 4.6 32 321-358 3-34 (175)
321 PF01583 APS_kinase: Adenylyls 97.1 0.00059 1.3E-08 64.1 4.7 43 322-367 2-44 (156)
322 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.003 6.4E-08 62.8 9.8 45 319-363 16-63 (235)
323 COG0529 CysC Adenylylsulfate k 97.1 0.0011 2.5E-08 62.9 6.3 47 319-368 20-66 (197)
324 TIGR01359 UMP_CMP_kin_fam UMP- 97.1 0.0015 3.3E-08 62.2 7.4 22 325-346 2-23 (183)
325 smart00487 DEXDc DEAD-like hel 97.1 0.0054 1.2E-07 57.5 11.1 25 323-347 25-50 (201)
326 COG3854 SpoIIIAA ncharacterize 97.1 0.004 8.7E-08 61.6 10.2 80 320-400 135-230 (308)
327 COG4088 Predicted nucleotide k 97.0 0.0017 3.6E-08 63.2 7.0 26 324-349 3-28 (261)
328 PRK13949 shikimate kinase; Pro 97.0 0.0075 1.6E-07 57.4 11.6 32 323-360 2-33 (169)
329 PF04665 Pox_A32: Poxvirus A32 97.0 0.018 3.9E-07 57.9 14.7 134 320-471 11-167 (241)
330 TIGR03877 thermo_KaiC_1 KaiC d 97.0 0.0066 1.4E-07 60.8 11.5 41 319-362 18-58 (237)
331 PRK14722 flhF flagellar biosyn 96.9 0.0024 5.2E-08 68.2 8.1 27 320-346 135-161 (374)
332 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0055 1.2E-07 60.6 10.1 23 322-344 29-51 (213)
333 KOG2383 Predicted ATPase [Gene 96.9 0.0025 5.4E-08 67.5 7.9 29 319-347 111-139 (467)
334 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0024 5.2E-08 65.2 7.8 97 277-399 57-160 (264)
335 PRK00771 signal recognition pa 96.9 0.0077 1.7E-07 65.8 12.0 29 320-348 93-121 (437)
336 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0051 1.1E-07 62.0 10.0 37 325-364 2-38 (249)
337 PRK05703 flhF flagellar biosyn 96.9 0.011 2.3E-07 64.6 13.0 26 322-347 221-246 (424)
338 PRK14974 cell division protein 96.9 0.011 2.4E-07 62.5 12.6 29 320-348 138-166 (336)
339 PRK12608 transcription termina 96.9 0.0056 1.2E-07 65.2 10.3 30 319-348 130-159 (380)
340 cd01131 PilT Pilus retraction 96.9 0.0013 2.9E-08 64.1 5.1 24 324-347 3-26 (198)
341 PF09848 DUF2075: Uncharacteri 96.9 0.004 8.6E-08 66.2 9.0 23 324-346 3-25 (352)
342 PF05272 VirE: Virulence-assoc 96.9 0.0031 6.7E-08 61.7 7.6 111 319-460 49-169 (198)
343 PF00437 T2SE: Type II/IV secr 96.9 0.0014 3E-08 66.9 5.3 101 276-399 100-208 (270)
344 TIGR02858 spore_III_AA stage I 96.9 0.0046 1E-07 63.4 9.1 27 322-348 111-137 (270)
345 PRK13695 putative NTPase; Prov 96.9 0.011 2.4E-07 56.1 11.2 24 324-347 2-25 (174)
346 PRK05800 cobU adenosylcobinami 96.8 0.011 2.4E-07 56.4 10.7 23 324-346 3-25 (170)
347 PF13479 AAA_24: AAA domain 96.8 0.0039 8.5E-08 61.5 7.8 21 322-342 3-23 (213)
348 PRK09519 recA DNA recombinatio 96.8 0.0058 1.2E-07 70.8 10.2 116 319-438 57-194 (790)
349 cd03238 ABC_UvrA The excision 96.8 0.018 4E-07 55.2 12.2 26 319-344 18-43 (176)
350 TIGR01420 pilT_fam pilus retra 96.8 0.0023 4.9E-08 67.9 6.4 75 321-398 121-205 (343)
351 PRK13947 shikimate kinase; Pro 96.8 0.0014 3.1E-08 61.7 4.3 31 324-360 3-33 (171)
352 KOG3347 Predicted nucleotide k 96.8 0.0033 7.2E-08 58.1 6.5 26 321-346 6-31 (176)
353 cd02027 APSK Adenosine 5'-phos 96.8 0.0046 1E-07 57.5 7.6 38 325-365 2-39 (149)
354 PRK14532 adenylate kinase; Pro 96.8 0.0026 5.6E-08 61.1 6.1 36 324-367 2-37 (188)
355 TIGR03878 thermo_KaiC_2 KaiC d 96.7 0.011 2.4E-07 60.1 10.9 41 319-362 33-73 (259)
356 PRK03839 putative kinase; Prov 96.7 0.0014 3E-08 62.6 4.0 30 324-359 2-31 (180)
357 PF08433 KTI12: Chromatin asso 96.7 0.0061 1.3E-07 62.5 8.9 72 325-401 4-83 (270)
358 cd03280 ABC_MutS2 MutS2 homolo 96.7 0.0098 2.1E-07 57.9 9.9 25 319-343 24-49 (200)
359 cd03216 ABC_Carb_Monos_I This 96.7 0.0094 2E-07 56.2 9.4 29 319-347 23-51 (163)
360 PF05970 PIF1: PIF1-like helic 96.7 0.0077 1.7E-07 64.4 9.8 29 320-348 20-48 (364)
361 PRK08233 hypothetical protein; 96.7 0.0091 2E-07 56.5 9.3 25 323-347 4-28 (182)
362 PRK04040 adenylate kinase; Pro 96.7 0.011 2.3E-07 57.4 9.7 26 322-347 2-27 (188)
363 PF10443 RNA12: RNA12 protein; 96.7 0.21 4.6E-06 54.0 20.2 79 390-476 150-231 (431)
364 PRK00625 shikimate kinase; Pro 96.7 0.0018 4E-08 61.9 4.2 31 324-360 2-32 (173)
365 cd00464 SK Shikimate kinase (S 96.7 0.0019 4.1E-08 59.5 4.2 39 324-370 1-39 (154)
366 PLN02200 adenylate kinase fami 96.6 0.0063 1.4E-07 61.1 8.1 28 319-346 40-67 (234)
367 PF06745 KaiC: KaiC; InterPro 96.6 0.023 4.9E-07 56.2 12.1 27 319-345 16-42 (226)
368 smart00534 MUTSac ATPase domai 96.6 0.0094 2E-07 57.4 8.8 20 325-344 2-21 (185)
369 TIGR00416 sms DNA repair prote 96.6 0.0059 1.3E-07 67.2 8.2 80 319-402 91-184 (454)
370 COG2874 FlaH Predicted ATPases 96.6 0.022 4.8E-07 55.9 11.1 134 300-452 12-178 (235)
371 TIGR00150 HI0065_YjeE ATPase, 96.6 0.007 1.5E-07 55.4 7.3 29 320-348 20-48 (133)
372 cd00227 CPT Chloramphenicol (C 96.6 0.0024 5.1E-08 60.9 4.4 25 322-346 2-26 (175)
373 cd03222 ABC_RNaseL_inhibitor T 96.6 0.013 2.9E-07 56.2 9.6 29 319-347 22-50 (177)
374 TIGR03880 KaiC_arch_3 KaiC dom 96.6 0.02 4.3E-07 56.7 11.2 41 319-362 13-53 (224)
375 PRK08154 anaerobic benzoate ca 96.6 0.0082 1.8E-07 62.7 8.8 35 319-359 130-164 (309)
376 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.015 3.1E-07 54.2 9.6 29 319-347 22-50 (157)
377 TIGR03881 KaiC_arch_4 KaiC dom 96.6 0.0068 1.5E-07 60.1 7.8 42 319-363 17-58 (229)
378 PRK04328 hypothetical protein; 96.6 0.021 4.5E-07 57.8 11.3 40 319-361 20-59 (249)
379 PRK05541 adenylylsulfate kinas 96.5 0.0085 1.8E-07 56.9 8.0 42 320-364 5-46 (176)
380 TIGR02533 type_II_gspE general 96.5 0.0077 1.7E-07 66.8 8.5 97 277-399 219-322 (486)
381 PF13238 AAA_18: AAA domain; P 96.5 0.0019 4.1E-08 57.2 3.1 22 325-346 1-22 (129)
382 cd00544 CobU Adenosylcobinamid 96.5 0.012 2.5E-07 56.2 8.6 22 325-346 2-23 (169)
383 cd01130 VirB11-like_ATPase Typ 96.5 0.0043 9.4E-08 59.8 5.7 28 320-347 23-50 (186)
384 cd00984 DnaB_C DnaB helicase C 96.5 0.0093 2E-07 59.5 8.1 41 319-361 10-50 (242)
385 PRK13948 shikimate kinase; Pro 96.5 0.0056 1.2E-07 59.1 6.1 44 319-370 7-50 (182)
386 PRK14737 gmk guanylate kinase; 96.5 0.0082 1.8E-07 58.1 7.3 27 321-347 3-29 (186)
387 cd03243 ABC_MutS_homologs The 96.4 0.017 3.6E-07 56.4 9.5 26 319-344 26-51 (202)
388 PHA02530 pseT polynucleotide k 96.4 0.0092 2E-07 61.6 8.1 38 323-367 3-40 (300)
389 TIGR02655 circ_KaiC circadian 96.4 0.019 4.1E-07 63.8 10.9 80 319-402 260-367 (484)
390 cd03228 ABCC_MRP_Like The MRP 96.4 0.025 5.5E-07 53.5 10.3 29 319-347 25-53 (171)
391 PRK06217 hypothetical protein; 96.4 0.0032 6.9E-08 60.5 4.2 23 324-346 3-25 (183)
392 TIGR02236 recomb_radA DNA repa 96.4 0.019 4E-07 59.9 10.2 45 319-363 92-139 (310)
393 PF00448 SRP54: SRP54-type pro 96.4 0.0097 2.1E-07 58.1 7.5 38 322-360 1-38 (196)
394 cd02020 CMPK Cytidine monophos 96.4 0.0032 6.9E-08 57.4 3.9 30 325-360 2-31 (147)
395 COG4608 AppF ABC-type oligopep 96.4 0.0089 1.9E-07 60.6 7.4 30 318-347 35-64 (268)
396 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.015 3.2E-07 53.7 8.4 29 319-347 23-51 (144)
397 PRK14527 adenylate kinase; Pro 96.4 0.01 2.2E-07 57.3 7.6 28 320-347 4-31 (191)
398 PRK00889 adenylylsulfate kinas 96.4 0.011 2.4E-07 56.1 7.7 41 321-364 3-43 (175)
399 KOG3928 Mitochondrial ribosome 96.4 0.13 2.7E-06 55.1 16.0 51 451-503 402-459 (461)
400 cd02021 GntK Gluconate kinase 96.4 0.0032 7E-08 58.0 3.8 22 325-346 2-23 (150)
401 COG2805 PilT Tfp pilus assembl 96.4 0.085 1.9E-06 54.4 14.1 77 321-400 123-210 (353)
402 COG0467 RAD55 RecA-superfamily 96.4 0.0055 1.2E-07 62.2 5.7 45 319-366 20-64 (260)
403 TIGR01069 mutS2 MutS2 family p 96.4 0.077 1.7E-06 62.2 15.8 23 323-345 323-345 (771)
404 PF00406 ADK: Adenylate kinase 96.4 0.011 2.3E-07 54.9 7.2 34 327-368 1-34 (151)
405 PF07088 GvpD: GvpD gas vesicl 96.4 0.017 3.6E-07 61.4 9.2 34 315-348 3-36 (484)
406 COG2909 MalT ATP-dependent tra 96.3 0.066 1.4E-06 61.8 14.7 159 319-492 34-226 (894)
407 PRK14531 adenylate kinase; Pro 96.3 0.004 8.7E-08 59.8 4.4 24 323-346 3-26 (183)
408 PRK12726 flagellar biosynthesi 96.3 0.019 4.1E-07 61.4 9.8 29 319-347 203-231 (407)
409 cd01428 ADK Adenylate kinase ( 96.3 0.0036 7.8E-08 60.0 4.0 22 325-346 2-23 (194)
410 COG0703 AroK Shikimate kinase 96.3 0.0048 1.1E-07 58.7 4.7 40 323-370 3-42 (172)
411 PRK14530 adenylate kinase; Pro 96.3 0.0041 8.8E-08 61.3 4.4 24 323-346 4-27 (215)
412 cd03246 ABCC_Protease_Secretio 96.3 0.045 9.7E-07 51.9 11.4 29 319-347 25-53 (173)
413 PF12780 AAA_8: P-loop contain 96.3 0.027 5.8E-07 57.7 10.4 92 280-398 8-99 (268)
414 cd03115 SRP The signal recogni 96.3 0.031 6.7E-07 52.9 10.2 36 324-362 2-37 (173)
415 COG5245 DYN1 Dynein, heavy cha 96.3 0.029 6.2E-07 67.7 11.4 144 319-475 1491-1659(3164)
416 PRK06547 hypothetical protein; 96.3 0.0046 1E-07 59.1 4.4 28 319-346 12-39 (172)
417 PRK12339 2-phosphoglycerate ki 96.3 0.1 2.2E-06 51.0 13.9 25 322-346 3-27 (197)
418 PTZ00088 adenylate kinase 1; P 96.3 0.0052 1.1E-07 61.5 5.0 26 321-346 5-30 (229)
419 cd03283 ABC_MutS-like MutS-lik 96.3 0.031 6.7E-07 54.6 10.3 27 320-346 23-49 (199)
420 PRK06696 uridine kinase; Valid 96.3 0.0065 1.4E-07 60.3 5.6 42 319-363 19-60 (223)
421 TIGR01448 recD_rel helicase, p 96.3 0.011 2.4E-07 68.7 8.3 26 323-348 339-364 (720)
422 TIGR00152 dephospho-CoA kinase 96.3 0.027 5.9E-07 54.2 9.7 39 325-371 2-40 (188)
423 PLN02674 adenylate kinase 96.3 0.0099 2.1E-07 60.0 6.8 39 320-366 29-67 (244)
424 cd01122 GP4d_helicase GP4d_hel 96.3 0.031 6.7E-07 56.8 10.6 28 319-346 27-54 (271)
425 TIGR01313 therm_gnt_kin carboh 96.3 0.0037 8E-08 58.5 3.6 22 325-346 1-22 (163)
426 cd03287 ABC_MSH3_euk MutS3 hom 96.3 0.02 4.4E-07 57.0 9.0 25 320-344 29-53 (222)
427 TIGR02768 TraA_Ti Ti-type conj 96.2 0.018 3.8E-07 67.3 9.8 77 322-401 368-452 (744)
428 PRK14730 coaE dephospho-CoA ki 96.2 0.038 8.3E-07 53.8 10.7 39 324-370 3-41 (195)
429 cd03247 ABCC_cytochrome_bd The 96.2 0.059 1.3E-06 51.3 11.8 29 319-347 25-53 (178)
430 PRK05537 bifunctional sulfate 96.2 0.017 3.6E-07 65.4 9.2 95 300-398 372-474 (568)
431 cd03282 ABC_MSH4_euk MutS4 hom 96.2 0.03 6.6E-07 54.9 9.9 26 320-345 27-52 (204)
432 PTZ00202 tuzin; Provisional 96.2 0.21 4.6E-06 54.4 16.7 52 278-347 260-311 (550)
433 PRK03846 adenylylsulfate kinas 96.2 0.012 2.7E-07 57.1 7.1 44 319-365 21-64 (198)
434 COG1124 DppF ABC-type dipeptid 96.2 0.027 5.9E-07 56.3 9.4 28 319-346 30-57 (252)
435 COG1102 Cmk Cytidylate kinase 96.2 0.0043 9.4E-08 58.2 3.6 28 325-358 3-30 (179)
436 COG4178 ABC-type uncharacteriz 96.2 0.034 7.4E-07 62.6 11.2 30 318-347 415-444 (604)
437 PF13245 AAA_19: Part of AAA d 96.2 0.005 1.1E-07 50.7 3.6 24 323-346 11-35 (76)
438 COG0563 Adk Adenylate kinase a 96.2 0.0066 1.4E-07 58.4 4.9 23 324-346 2-24 (178)
439 TIGR02525 plasmid_TraJ plasmid 96.2 0.011 2.5E-07 63.2 7.0 75 323-399 150-236 (372)
440 PRK03731 aroL shikimate kinase 96.1 0.006 1.3E-07 57.6 4.4 40 323-370 3-42 (171)
441 PRK04301 radA DNA repair and r 96.1 0.022 4.9E-07 59.6 9.1 45 319-363 99-146 (317)
442 PRK10436 hypothetical protein; 96.1 0.015 3.3E-07 64.0 8.1 97 277-399 195-298 (462)
443 PRK00409 recombination and DNA 96.1 0.15 3.2E-06 60.0 16.7 24 322-345 327-350 (782)
444 TIGR00064 ftsY signal recognit 96.1 0.071 1.5E-06 54.7 12.6 30 319-348 69-98 (272)
445 cd02019 NK Nucleoside/nucleoti 96.1 0.0051 1.1E-07 49.5 3.3 22 325-346 2-23 (69)
446 TIGR02782 TrbB_P P-type conjug 96.1 0.0034 7.3E-08 65.3 2.9 77 321-399 131-215 (299)
447 TIGR01613 primase_Cterm phage/ 96.1 0.015 3.2E-07 60.6 7.6 117 319-459 73-202 (304)
448 PF10236 DAP3: Mitochondrial r 96.1 0.3 6.5E-06 51.1 17.4 101 376-476 142-279 (309)
449 PRK13764 ATPase; Provisional 96.1 0.01 2.2E-07 67.1 6.8 29 320-348 255-283 (602)
450 COG2804 PulE Type II secretory 96.1 0.024 5.2E-07 62.1 9.3 100 275-400 233-339 (500)
451 COG1936 Predicted nucleotide k 96.1 0.0044 9.6E-08 58.7 3.2 30 324-360 2-31 (180)
452 PRK14528 adenylate kinase; Pro 96.1 0.0061 1.3E-07 58.9 4.3 24 323-346 2-25 (186)
453 PRK08485 DNA polymerase III su 96.1 0.05 1.1E-06 53.0 10.5 85 375-472 41-137 (206)
454 PF13086 AAA_11: AAA domain; P 96.1 0.0043 9.2E-08 60.6 3.2 23 324-346 19-41 (236)
455 KOG1808 AAA ATPase containing 96.1 0.013 2.8E-07 72.7 7.9 131 322-473 440-598 (1856)
456 PRK13946 shikimate kinase; Pro 96.1 0.0059 1.3E-07 58.7 4.0 34 321-360 9-42 (184)
457 PF01745 IPT: Isopentenyl tran 96.1 0.012 2.7E-07 57.7 6.2 133 324-477 3-142 (233)
458 PRK05057 aroK shikimate kinase 96.1 0.0069 1.5E-07 57.8 4.4 33 322-360 4-36 (172)
459 PRK13900 type IV secretion sys 96.1 0.012 2.5E-07 62.2 6.6 75 320-399 158-246 (332)
460 TIGR01360 aden_kin_iso1 adenyl 96.1 0.0061 1.3E-07 58.0 4.1 24 323-346 4-27 (188)
461 cd03227 ABC_Class2 ABC-type Cl 96.1 0.038 8.1E-07 52.0 9.4 26 321-346 20-45 (162)
462 TIGR00455 apsK adenylylsulfate 96.1 0.018 3.8E-07 55.2 7.3 44 319-365 15-58 (184)
463 PF13481 AAA_25: AAA domain; P 96.0 0.047 1E-06 52.3 10.2 42 321-362 31-79 (193)
464 PF02562 PhoH: PhoH-like prote 96.0 0.0095 2.1E-07 58.5 5.3 24 323-346 20-43 (205)
465 TIGR02538 type_IV_pilB type IV 96.0 0.017 3.7E-07 65.4 8.1 97 277-399 293-396 (564)
466 PRK13894 conjugal transfer ATP 96.0 0.008 1.7E-07 63.1 4.8 77 321-399 147-230 (319)
467 TIGR03499 FlhF flagellar biosy 96.0 0.019 4E-07 59.3 7.5 26 321-346 193-218 (282)
468 PF00270 DEAD: DEAD/DEAH box h 96.0 0.064 1.4E-06 49.7 10.6 21 322-342 14-34 (169)
469 PRK13808 adenylate kinase; Pro 96.0 0.032 6.9E-07 58.8 9.3 23 324-346 2-24 (333)
470 PF08303 tRNA_lig_kinase: tRNA 96.0 0.14 3.1E-06 48.3 12.6 131 328-477 5-146 (168)
471 PRK02496 adk adenylate kinase; 96.0 0.0067 1.5E-07 58.1 3.9 23 324-346 3-25 (184)
472 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.0 0.053 1.2E-06 52.8 10.3 25 323-347 39-63 (205)
473 TIGR02238 recomb_DMC1 meiotic 96.0 0.034 7.3E-07 58.3 9.3 45 319-363 93-140 (313)
474 COG2274 SunT ABC-type bacterio 96.0 0.037 8.1E-07 64.0 10.5 29 319-347 496-524 (709)
475 cd03223 ABCD_peroxisomal_ALDP 96.0 0.075 1.6E-06 50.1 10.9 29 319-347 24-52 (166)
476 PRK13833 conjugal transfer pro 95.9 0.0098 2.1E-07 62.5 5.2 75 322-398 144-225 (323)
477 TIGR01526 nadR_NMN_Atrans nico 95.9 0.023 4.9E-07 59.9 8.0 37 322-364 162-198 (325)
478 cd02022 DPCK Dephospho-coenzym 95.9 0.07 1.5E-06 51.0 10.5 37 325-370 2-38 (179)
479 TIGR01351 adk adenylate kinase 95.9 0.0075 1.6E-07 59.2 3.9 22 325-346 2-23 (210)
480 TIGR02788 VirB11 P-type DNA tr 95.9 0.016 3.4E-07 60.6 6.5 29 319-347 141-169 (308)
481 PRK13889 conjugal transfer rel 95.9 0.035 7.7E-07 66.2 9.9 75 324-401 364-446 (988)
482 PLN02459 probable adenylate ki 95.8 0.014 3E-07 59.4 5.6 28 319-346 26-53 (261)
483 PTZ00035 Rad51 protein; Provis 95.8 0.051 1.1E-06 57.6 10.1 45 319-363 115-162 (337)
484 PRK00279 adk adenylate kinase; 95.8 0.0091 2E-07 58.8 4.2 23 324-346 2-24 (215)
485 COG1120 FepC ABC-type cobalami 95.8 0.073 1.6E-06 54.1 10.7 29 319-347 25-53 (258)
486 PF10923 DUF2791: P-loop Domai 95.8 0.32 7E-06 52.8 16.2 55 275-347 19-74 (416)
487 cd03214 ABC_Iron-Siderophores_ 95.8 0.036 7.7E-07 53.0 8.0 29 319-347 22-50 (180)
488 PRK06731 flhF flagellar biosyn 95.8 0.042 9.1E-07 56.4 8.9 78 321-401 74-167 (270)
489 cd01125 repA Hexameric Replica 95.8 0.21 4.5E-06 50.0 13.8 39 325-363 4-51 (239)
490 PRK12727 flagellar biosynthesi 95.7 0.058 1.3E-06 60.0 10.4 27 320-346 348-374 (559)
491 cd00071 GMPK Guanosine monopho 95.7 0.031 6.8E-07 51.2 7.1 23 325-347 2-24 (137)
492 TIGR02239 recomb_RAD51 DNA rep 95.7 0.035 7.5E-07 58.3 8.3 27 319-345 93-119 (316)
493 PLN03187 meiotic recombination 95.7 0.049 1.1E-06 57.8 9.5 45 319-363 123-170 (344)
494 cd02028 UMPK_like Uridine mono 95.7 0.012 2.5E-07 56.6 4.3 38 325-365 2-39 (179)
495 PRK12724 flagellar biosynthesi 95.7 0.16 3.5E-06 55.1 13.3 26 321-346 222-247 (432)
496 PF00488 MutS_V: MutS domain V 95.7 0.072 1.6E-06 53.5 10.0 109 322-442 43-167 (235)
497 PF08298 AAA_PrkA: PrkA AAA do 95.7 0.021 4.6E-07 60.2 6.3 54 280-348 61-114 (358)
498 PRK14526 adenylate kinase; Pro 95.7 0.013 2.8E-07 57.9 4.6 23 324-346 2-24 (211)
499 PRK11174 cysteine/glutathione 95.7 0.085 1.8E-06 59.9 11.8 28 319-346 373-400 (588)
500 PF01443 Viral_helicase1: Vira 95.7 0.012 2.6E-07 58.1 4.4 21 325-345 1-21 (234)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-45 Score=369.20 Aligned_cols=225 Identities=39% Similarity=0.643 Sum_probs=212.4
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...|.++|+||+|+++++++|+|.+++||++|++|+++| ..+|++||||||||||||+||||+|++.
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~G--------I~PPKGVLLYGPPGTGKTLLAkAVA~~T----- 209 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELG--------IDPPKGVLLYGPPGTGKTLLAKAVANQT----- 209 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcC--------CCCCCceEeeCCCCCcHHHHHHHHHhcc-----
Confidence 467889999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~ 428 (567)
+..|+.+.++++..+|.|+..+.++++|..|++++| |||||||||.++.+|-+. ..+..|+++-+||.+||++..
T Consensus 210 -~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaP-sIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 210 -DATFIRVVGSELVQKYIGEGARLVRELFELAREKAP-SIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred -CceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCC-eEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 778999999999999999999999999999999996 999999999999988643 455678899999999999999
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCHH---HHHHHHHhccCCCHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTKA---ELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~~---~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
.+++-||+|||+++-|||+|+| |||+.|+|++|+.+.|.+||+.|+++|... +++.++..+.|+||+||+++|.+
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictE 367 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTE 367 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999997643 79999999999999999999999
Q ss_pred HHHHHHHH
Q 047219 504 AERSWASK 511 (567)
Q Consensus 504 a~~~a~~r 511 (567)
|-+.|.+.
T Consensus 368 AGm~AiR~ 375 (406)
T COG1222 368 AGMFAIRE 375 (406)
T ss_pred HhHHHHHh
Confidence 99988775
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-43 Score=382.40 Aligned_cols=260 Identities=39% Similarity=0.582 Sum_probs=239.8
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...++++|+||+|+++.|++|.+.|.+|++||+.|.++| ..+|++||||||||||||++||++|+++
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G--------i~ppkGVLlyGPPGC~KT~lAkalAne~----- 492 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG--------ISPPKGVLLYGPPGCGKTLLAKALANEA----- 492 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc--------CCCCceEEEECCCCcchHHHHHHHhhhh-----
Confidence 567999999999999999999999999999999999987 8999999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
+++|+++.+++++++|+|++|+.++++|+.|+..+| +||||||||.+...|.+..+.+..|++++||++||++....+
T Consensus 493 -~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP-~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 493 -GMNFLSVKGPELFSKYVGESERAIREVFRKARQVAP-CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred -cCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCC-eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 889999999999999999999999999999999986 999999999999999877778999999999999999999999
Q ss_pred EEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCHH---HHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTKA---ELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~~---~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
|+|||+||+|+.+|++|++ |||..|++++||.+.|.+||+.++++++.. ++++++..|.||||+||..+|++|..
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~ 650 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAAL 650 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999997643 78999999999999999999999999
Q ss_pred HHHHHHHhccccccCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 047219 507 SWASKIIRGQITKDGEQACLPPLQEYIESATNRRRSLLDAAEQSHQNIN 555 (567)
Q Consensus 507 ~a~~r~i~~~i~~~~~~~~~~~l~e~le~~e~~~~~li~~al~~~~~~~ 555 (567)
.|+++.+. ......+.+.++++..++++-...++.|++..
T Consensus 651 ~a~~e~i~---------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa 690 (693)
T KOG0730|consen 651 LALRESIE---------ATEITWQHFEEALKAVRPSLTSELLEKYEDFA 690 (693)
T ss_pred HHHHHhcc---------cccccHHHHHHHHHhhcccCCHHHHHHHHHHh
Confidence 98887664 22344567777777777888887777776653
No 3
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-41 Score=355.30 Aligned_cols=264 Identities=29% Similarity=0.527 Sum_probs=230.4
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...|.++|+||+|++++..+|..+|.+|.++|++|+.+| ...|.+||||||||||||+||+|+|++.
T Consensus 503 ~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lG--------i~~PsGvLL~GPPGCGKTLlAKAVANEa----- 569 (802)
T KOG0733|consen 503 ATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALG--------IDAPSGVLLCGPPGCGKTLLAKAVANEA----- 569 (802)
T ss_pred eecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhC--------CCCCCceEEeCCCCccHHHHHHHHhhhc-----
Confidence 356899999999999999999999999999999999997 8889999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
+.||+.+.+++++++|+|+++..++.+|..|+..+| ||||+||||.|.+.|.........+++++||..||+++.+.+
T Consensus 570 -g~NFisVKGPELlNkYVGESErAVR~vFqRAR~saP-CVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~g 647 (802)
T KOG0733|consen 570 -GANFISVKGPELLNKYVGESERAVRQVFQRARASAP-CVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRG 647 (802)
T ss_pred -cCceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCC-eEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccc
Confidence 899999999999999999999999999999999986 999999999999999998888999999999999999999999
Q ss_pred EEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHh--h---CHHHHHHHHHhcc--CCCHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKH--L---TKAELAELATATE--EMSGRDIRDVCQ 502 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~--~---~~~~l~~la~~t~--g~s~~dL~~L~~ 502 (567)
|.||+|||+|+-+||++++ |||..+++++|+.++|.+||+.++++ . .+.+++.++..+. ||+|+||..||+
T Consensus 648 V~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvr 727 (802)
T KOG0733|consen 648 VYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVR 727 (802)
T ss_pred eEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHH
Confidence 9999999999999999999 99999999999999999999999984 2 2347899999887 999999999999
Q ss_pred HHHHHHHHHHHhccccccCccc------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 047219 503 QAERSWASKIIRGQITKDGEQA------CLPPLQEYIESATNRRRSLLDAAEQSH 551 (567)
Q Consensus 503 ~a~~~a~~r~i~~~i~~~~~~~------~~~~l~e~le~~e~~~~~li~~al~~~ 551 (567)
+|...++++.+.. .+...... +...+..+-+++...+.++-++--..|
T Consensus 728 eAsi~AL~~~~~~-~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Y 781 (802)
T KOG0733|consen 728 EASILALRESLFE-IDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKY 781 (802)
T ss_pred HHHHHHHHHHHhh-ccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHH
Confidence 9999998887753 22211111 122344555555555555554433333
No 4
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.9e-40 Score=380.89 Aligned_cols=367 Identities=28% Similarity=0.466 Sum_probs=300.1
Q ss_pred hcchhhhH-HHHHHHhCCCCCCccceEEEEe-cceEEEEEEecCC-C----CcchHHHHHHHhhCceecccCCCceeEEE
Q 047219 109 AKKERQRI-EELLKRKGMHYGSCPTFTVAVK-GQKVTIKFQVPPA-C----EIPQLIANLVSHLGLKVEEHGGGSDMGLR 181 (567)
Q Consensus 109 ~~~~~~~~-~~~~~~~g~~~g~~~~~~v~~~-g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 181 (567)
+|+|++|| ++.|.+||+.+||+ |+|. |++.++|++||.. + +++++++.+|+|+|+++|| .|+|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 84 (733)
T TIGR01243 14 VGRGIVRIDRQTAARLGVEPGDF----VEIEKGDRSVVAIVWPLRPDDEGRGIIRMDGYLRANAGVTIGD-----TVTVE 84 (733)
T ss_pred CCCCeEeeCHHHHHhcCCCCCCE----EEEecCCCceeEEEEecCccccCCCEEeecHHHHhhcCCCCCC-----eEEEe
Confidence 49999999 69999999999999 9999 8899999999852 2 5788999999999999999 99999
Q ss_pred eecccccceeEecCCCCccccCCCccccCcccccccchheeeeceeecCCCCceeeeccCcCCHHHHHHHHHHHhhhcc-
Q 047219 182 AWDSAVAWQLTLKPPEKQNESGGDRAQSGDMNAREGDLCILIFRSLITSDKPEIEFIKKGSLTSEELDALVSVLQLAGR- 260 (567)
Q Consensus 182 ~~~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 260 (567)
++++++|++|+++|... ...+... .......+.++|+..|+.+.+.+.... . ...+....+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-----~~~v~~~~p~~~~ 149 (733)
T TIGR01243 85 RAEVKEAKKVVLAPTQP-IRFGRDF--------VDYVKEFLLGKPISKGETVIVPVLEGA-L-----PFVVVSTQPAGFV 149 (733)
T ss_pred ecCCCccceEeeccccc-cccccch--------HHHHHHHHcCCCCCCCCEEEecccCcc-e-----eEEEEecCCCCcE
Confidence 99999999999998633 2122111 123456667788888887655443211 1 000111111111
Q ss_pred ------cccccCccc---cccCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCC
Q 047219 261 ------RIYGLDEPQ---LNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPP 331 (567)
Q Consensus 261 ------~~~~~~~~~---~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~Gpp 331 (567)
.+.....+. .....+.++|++|+|++++++.+++++..++.+|++|+.++ ..+++++||||||
T Consensus 150 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g--------i~~~~giLL~Gpp 221 (733)
T TIGR01243 150 YVTEATEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG--------IEPPKGVLLYGPP 221 (733)
T ss_pred EECCCceEEecCCccccccccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC--------CCCCceEEEECCC
Confidence 011111111 11234779999999999999999999999999999999886 7889999999999
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHH
Q 047219 332 GTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEA 411 (567)
Q Consensus 332 GTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~ 411 (567)
|||||++|+++|+++ +.+++.+++.++.++++|+.+..++.+|+.+....+ ++|||||||.+.++++......
T Consensus 222 GtGKT~laraia~~~------~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~~~p-~il~iDEid~l~~~r~~~~~~~ 294 (733)
T TIGR01243 222 GTGKTLLAKAVANEA------GAYFISINGPEIMSKYYGESEERLREIFKEAEENAP-SIIFIDEIDAIAPKREEVTGEV 294 (733)
T ss_pred CCChHHHHHHHHHHh------CCeEEEEecHHHhcccccHHHHHHHHHHHHHHhcCC-cEEEeehhhhhcccccCCcchH
Confidence 999999999999999 677999999999999999999999999999987764 9999999999998877655566
Q ss_pred HHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHH
Q 047219 412 TRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELA 486 (567)
Q Consensus 412 ~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la 486 (567)
..+++++|+..++++.....++||++||+++.+++++++ ||+..+.++.|+.++|.+|++.+.+.+. ...++.++
T Consensus 295 ~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la 374 (733)
T TIGR01243 295 EKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLA 374 (733)
T ss_pred HHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHH
Confidence 678889999999998888899999999999999999998 9999999999999999999998887654 34688999
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHHh
Q 047219 487 TATEEMSGRDIRDVCQQAERSWASKIIR 514 (567)
Q Consensus 487 ~~t~g~s~~dL~~L~~~a~~~a~~r~i~ 514 (567)
..++||+++|+..+|+.+.+.+.++.+.
T Consensus 375 ~~t~G~~gadl~~l~~~a~~~al~r~~~ 402 (733)
T TIGR01243 375 EVTHGFVGADLAALAKEAAMAALRRFIR 402 (733)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998888764
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-39 Score=344.49 Aligned_cols=224 Identities=35% Similarity=0.610 Sum_probs=212.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
++++|++|+|++....+|.+++.. +++|+.|..+| ..||++||||||||||||.||+|||+++ ++
T Consensus 185 snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lG--------v~PprGvLlHGPPGCGKT~lA~AiAgel------~v 249 (802)
T KOG0733|consen 185 SNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLG--------VRPPRGVLLHGPPGCGKTSLANAIAGEL------GV 249 (802)
T ss_pred CCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcC--------CCCCCceeeeCCCCccHHHHHHHHhhhc------CC
Confidence 468999999999999999999876 99999999987 8999999999999999999999999999 99
Q ss_pred CeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccC----C
Q 047219 355 PLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD----K 430 (567)
Q Consensus 355 ~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~----~ 430 (567)
||+.|++.++.+.+.|+++++++++|+.|+..+| ||+||||||.+.++|+....+..++++.+|+..||++... .
T Consensus 250 Pf~~isApeivSGvSGESEkkiRelF~~A~~~aP-civFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 250 PFLSISAPEIVSGVSGESEKKIRELFDQAKSNAP-CIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ceEeecchhhhcccCcccHHHHHHHHHHHhccCC-eEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 9999999999999999999999999999999986 9999999999999999999999999999999999998654 6
Q ss_pred cEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCHH---HHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 431 KVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTKA---ELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 431 ~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~~---~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
.|+||+|||+|+.||++|++ ||++.|.+..|+...|.+||+..++++... ++.++|..|+||.|+||.+||.+|.
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa 408 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAA 408 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHH
Confidence 79999999999999999999 999999999999999999999999976543 7899999999999999999999999
Q ss_pred HHHHHHHHh
Q 047219 506 RSWASKIIR 514 (567)
Q Consensus 506 ~~a~~r~i~ 514 (567)
.-+.+|++.
T Consensus 409 ~vAikR~ld 417 (802)
T KOG0733|consen 409 FVAIKRILD 417 (802)
T ss_pred HHHHHHHhh
Confidence 999999876
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.8e-39 Score=348.31 Aligned_cols=292 Identities=28% Similarity=0.474 Sum_probs=245.5
Q ss_pred cCCHHHHHHHHHHHhhhcccccccCccccccCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCC
Q 047219 242 SLTSEELDALVSVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNR 321 (567)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~ 321 (567)
.++++++.+..+.++..... ..-.+..|+++|+||+|.+++|.+|.+.|.+||+||++|.. +.++
T Consensus 640 ~l~~edf~kals~~~~~fs~------aiGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfss---------glrk 704 (953)
T KOG0736|consen 640 LLTEEDFDKALSRLQKEFSD------AIGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSS---------GLRK 704 (953)
T ss_pred eecHHHHHHHHHHHHHhhhh------hcCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhc---------cccc
Confidence 44566666666655543221 11234679999999999999999999999999999999964 2566
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFA 401 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~ 401 (567)
..+||||||||||||++|+|+|.++ ..+|..+.++++...|+|++|+++|++|++|+..+| ||||+||+|+++
T Consensus 705 RSGILLYGPPGTGKTLlAKAVATEc------sL~FlSVKGPELLNMYVGqSE~NVR~VFerAR~A~P-CVIFFDELDSlA 777 (953)
T KOG0736|consen 705 RSGILLYGPPGTGKTLLAKAVATEC------SLNFLSVKGPELLNMYVGQSEENVREVFERARSAAP-CVIFFDELDSLA 777 (953)
T ss_pred cceeEEECCCCCchHHHHHHHHhhc------eeeEEeecCHHHHHHHhcchHHHHHHHHHHhhccCC-eEEEeccccccC
Confidence 7899999999999999999999999 889999999999999999999999999999998875 999999999999
Q ss_pred hhhhh--hhHHHHHHHHHHHHHhhcCcc--cCCcEEEEEeeCCCCCCChHHHh--ccceEEEecCC-CHHHHHHHHHHHH
Q 047219 402 VARDS--EMHEATRRILSVLLRQIDGFE--QDKKVVVIAATNRKQDLDPALIS--RFDSMITFGLP-DHENRQEIAAQYA 474 (567)
Q Consensus 402 ~~~q~--~l~~~~~~vl~~LL~~ld~~~--~~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P-~~~eR~eIL~~~~ 474 (567)
++|.. ..+.++.|++.+||.++|++. ...+|.||+|||+|+.|||+|++ |||..++++++ +.+.+..+|+.++
T Consensus 778 P~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlT 857 (953)
T KOG0736|consen 778 PNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALT 857 (953)
T ss_pred ccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHH
Confidence 99864 456789999999999999997 56789999999999999999999 99999999888 5677888999999
Q ss_pred HhhCHH---HHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHHHHhccccc----c--CcccCCCcHHHHHHHHHHHHHHHH
Q 047219 475 KHLTKA---ELAELATATE-EMSGRDIRDVCQQAERSWASKIIRGQITK----D--GEQACLPPLQEYIESATNRRRSLL 544 (567)
Q Consensus 475 ~~~~~~---~l~~la~~t~-g~s~~dL~~L~~~a~~~a~~r~i~~~i~~----~--~~~~~~~~l~e~le~~e~~~~~li 544 (567)
++|..+ ++.++++.++ .|+|+|+-.+|..||.+|++|.+.+.... + ..........++++++++.+.++.
T Consensus 858 rkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS 937 (953)
T KOG0736|consen 858 RKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVS 937 (953)
T ss_pred HHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCccc
Confidence 987644 7888888776 59999999999999999999988753221 1 111222356788999988889999
Q ss_pred HHHHHHHhhHH
Q 047219 545 DAAEQSHQNIN 555 (567)
Q Consensus 545 ~~al~~~~~~~ 555 (567)
++.+.+|..++
T Consensus 938 ~~EL~~ye~vr 948 (953)
T KOG0736|consen 938 EQELLRYEMVR 948 (953)
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 7
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-38 Score=322.46 Aligned_cols=228 Identities=36% Similarity=0.584 Sum_probs=210.2
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..|.+.|+||.|++++|+-|+|++.+|+..|++|+.+ ..|.++||++||||||||+||+|+|.++
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~Gi---------rrPWkgvLm~GPPGTGKTlLAKAvATEc------ 269 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGI---------RRPWKGVLMVGPPGTGKTLLAKAVATEC------ 269 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhc---------ccccceeeeeCCCCCcHHHHHHHHHHhh------
Confidence 4577999999999999999999999999999999987 4778999999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhh-hhHHHHHHHHHHHHHhhcCcccC--
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS-EMHEATRRILSVLLRQIDGFEQD-- 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~-~l~~~~~~vl~~LL~~ld~~~~~-- 429 (567)
+..|+.|+.+.+.++|.|++++.++-+|+.|+.++| ++|||||||.|...|.. ..++..+++.++||.+||+....
T Consensus 270 ~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAP-StIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e 348 (491)
T KOG0738|consen 270 GTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAP-STIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE 348 (491)
T ss_pred cCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCC-ceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc
Confidence 778999999999999999999999999999999996 99999999999998875 46778899999999999998532
Q ss_pred --CcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 --KKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 --~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
..|.|+|+||.|++||++|++||...|.|++|+.+.|..+|+..++... ...++.+++.++||+|+||..+|++|
T Consensus 349 ~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreA 428 (491)
T KOG0738|consen 349 NSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREA 428 (491)
T ss_pred cceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHH
Confidence 3489999999999999999999999999999999999999999988643 34789999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q 047219 505 ERSWASKIIRGQ 516 (567)
Q Consensus 505 ~~~a~~r~i~~~ 516 (567)
.+++.+|.+.+.
T Consensus 429 sm~~mRR~i~g~ 440 (491)
T KOG0738|consen 429 SMMAMRRKIAGL 440 (491)
T ss_pred HHHHHHHHHhcC
Confidence 999999988754
No 8
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-37 Score=326.60 Aligned_cols=222 Identities=33% Similarity=0.554 Sum_probs=208.2
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
....+++|+|+-|.+++|++|.|.+ .+|+.|+.|.++| ...|++|||+||||||||+||||+|.+.
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLG--------GKLPKGVLLvGPPGTGKTlLARAvAGEA----- 361 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLG--------GKLPKGVLLVGPPGTGKTLLARAVAGEA----- 361 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHH-HHhcCcHHhhhcc--------CcCCCceEEeCCCCCchhHHHHHhhccc-----
Confidence 3455789999999999999999976 6899999999987 8999999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
++||++..++++..-++|...++++.+|..|+.++| |||||||||.+..+|........+.++++||..||++..+..
T Consensus 362 -~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~AP-cIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeG 439 (752)
T KOG0734|consen 362 -GVPFFYASGSEFDEMFVGVGARRVRDLFAAAKARAP-CIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEG 439 (752)
T ss_pred -CCCeEeccccchhhhhhcccHHHHHHHHHHHHhcCC-eEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCc
Confidence 999999999999999999999999999999999996 999999999999999887777889999999999999999999
Q ss_pred EEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCHH---HHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTKA---ELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~~---~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
++||++||.++.||++|.| |||+.+.++.||.+.|.+||+.|+.+.... +..-+++-+.||+|+||.+|++.|+-
T Consensus 440 iIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 440 IIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAAL 519 (752)
T ss_pred eEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999986543 78899999999999999999999885
Q ss_pred HHH
Q 047219 507 SWA 509 (567)
Q Consensus 507 ~a~ 509 (567)
.++
T Consensus 520 kAa 522 (752)
T KOG0734|consen 520 KAA 522 (752)
T ss_pred HHH
Confidence 544
No 9
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-36 Score=290.81 Aligned_cols=225 Identities=38% Similarity=0.641 Sum_probs=209.4
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
..+|.++|.||+|++-+|+++++.+++||.+-++|+++| ..+|++||+|||||||||+||+++|+..
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qig--------idpprgvllygppg~gktml~kava~~t----- 213 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIG--------IDPPRGVLLYGPPGTGKTMLAKAVANHT----- 213 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhC--------CCCCcceEEeCCCCCcHHHHHHHHhhcc-----
Confidence 467899999999999999999999999999999999998 8999999999999999999999999998
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhh---hhHHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS---EMHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~---~l~~~~~~vl~~LL~~ld~~~~ 428 (567)
...|+.+.++++..+|.|+....++.+|..|++++| +||||||||.++.++-+ +..+..++++-+||..||++..
T Consensus 214 -~a~firvvgsefvqkylgegprmvrdvfrlakenap-siifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq 291 (408)
T KOG0727|consen 214 -TAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAP-SIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ 291 (408)
T ss_pred -chheeeeccHHHHHHHhccCcHHHHHHHHHHhccCC-cEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc
Confidence 667999999999999999999999999999999996 99999999999988754 3455678899999999999999
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
..++-||++||+.+.+||+|++ |+|+.|+|++|+.++++-++...+.+|. ..+++.+.......+++||..+|++
T Consensus 292 ~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqe 371 (408)
T KOG0727|consen 292 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQE 371 (408)
T ss_pred ccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999988864 3378888888899999999999999
Q ss_pred HHHHHHHH
Q 047219 504 AERSWASK 511 (567)
Q Consensus 504 a~~~a~~r 511 (567)
|-+.+.+.
T Consensus 372 agm~avr~ 379 (408)
T KOG0727|consen 372 AGMLAVRE 379 (408)
T ss_pred HhHHHHHh
Confidence 99887764
No 10
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-35 Score=293.07 Aligned_cols=225 Identities=33% Similarity=0.534 Sum_probs=207.9
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
..+|++.|+|+.|++.+|+.|++.+.+|+++|.+|..- ..|.+++||||||||||+.||+|+|.+.
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGk---------R~PwrgiLLyGPPGTGKSYLAKAVATEA----- 190 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGK---------RKPWRGILLYGPPGTGKSYLAKAVATEA----- 190 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcCC---------CCcceeEEEeCCCCCcHHHHHHHHHhhc-----
Confidence 36789999999999999999999999999999999742 4567999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc-cCC
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE-QDK 430 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~-~~~ 430 (567)
+..|+.++.++++++|.|++++.+..+|+.|+++.| +||||||||.|.+.+.+...+..+++..+||-+|.+.- .+.
T Consensus 191 -nSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kP-SIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~ 268 (439)
T KOG0739|consen 191 -NSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKP-SIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDND 268 (439)
T ss_pred -CCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCC-cEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCC
Confidence 567999999999999999999999999999999985 99999999999999999999999999999999999874 456
Q ss_pred cEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 431 KVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 431 ~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
.++|+++||.|+.||.++++||+..|+|++|+...|..+++.++.. +...++..++..|+||+|+||.-+++.+.|
T Consensus 269 gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalm 348 (439)
T KOG0739|consen 269 GVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALM 348 (439)
T ss_pred ceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhh
Confidence 8999999999999999999999999999999999999999998764 567899999999999999999999999987
Q ss_pred HHHHHH
Q 047219 507 SWASKI 512 (567)
Q Consensus 507 ~a~~r~ 512 (567)
.-.+++
T Consensus 349 ePvRkv 354 (439)
T KOG0739|consen 349 EPVRKV 354 (439)
T ss_pred hhHHHh
Confidence 776665
No 11
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-35 Score=297.52 Aligned_cols=228 Identities=36% Similarity=0.601 Sum_probs=209.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
.-.++|+||+|++.+++.+.+.+.+|+++|++|...+ - ..++++|||+||||||||.+|+++|++. +
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~-L------l~p~kGiLL~GPpG~GKTmlAKA~Akea------g 152 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGK-L------LRPPKGILLYGPPGTGKTMLAKAIAKEA------G 152 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccc-c------ccCCccceecCCCCchHHHHHHHHHHHc------C
Confidence 3458999999999999999999999999999997322 1 4689999999999999999999999999 8
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc--
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK-- 431 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~-- 431 (567)
.+|+.+..+.++++|||+.++.++.+|..|....| +||||||+|++...|+...+++...+.++|....|++..+.+
T Consensus 153 a~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P-~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~r 231 (386)
T KOG0737|consen 153 ANFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQP-SIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSER 231 (386)
T ss_pred CCcceeeccccchhhHHHHHHHHHHHHhhhhhcCc-ceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCce
Confidence 88999999999999999999999999999998875 999999999999999888999999999999999999977655
Q ss_pred EEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQAERSW 508 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a~~~a 508 (567)
|+|++|||+|.++|++++||++..+++++|+.++|.+|++.+++.-. .-++.+++..|.||||.||+.+|..|....
T Consensus 232 VlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ 311 (386)
T KOG0737|consen 232 VLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRP 311 (386)
T ss_pred EEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhH
Confidence 99999999999999999999999999999999999999999987643 337999999999999999999999999877
Q ss_pred HHHHHhc
Q 047219 509 ASKIIRG 515 (567)
Q Consensus 509 ~~r~i~~ 515 (567)
.+.++..
T Consensus 312 ire~~~~ 318 (386)
T KOG0737|consen 312 IRELLVS 318 (386)
T ss_pred HHHHHHh
Confidence 7777654
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-34 Score=279.24 Aligned_cols=224 Identities=34% Similarity=0.583 Sum_probs=206.5
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..|.-+|+-|+|++.+++++++.|++|.+|||+|+.+| ...|+++|||||||||||++|+++|+..
T Consensus 140 KvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLG--------IaQPKGvlLygppgtGktLlaraVahht------ 205 (404)
T KOG0728|consen 140 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALG--------IAQPKGVLLYGPPGTGKTLLARAVAHHT------ 205 (404)
T ss_pred hCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcC--------CCCCcceEEecCCCCchhHHHHHHHhhc------
Confidence 45677899999999999999999999999999999997 8899999999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
.+.|+.++++++..+|.|+....++++|--|++++| +|||+||||++...+.+. .....++..-+||.++|+++..
T Consensus 206 ~c~firvsgselvqk~igegsrmvrelfvmarehap-siifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 206 DCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAP-SIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred ceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcCC-ceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 778999999999999999999999999999999996 999999999998776542 2345577788899999999999
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCHH---HHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTKA---ELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~~---~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
.++-||++||+.+-||++|++ |+|+.|+|++|+.+.|.+|++.+.+++..- ++..+++...|-++++++.+|.+|
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vctea 364 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEA 364 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhh
Confidence 999999999999999999999 999999999999999999999999887543 789999999999999999999999
Q ss_pred HHHHHHH
Q 047219 505 ERSWASK 511 (567)
Q Consensus 505 ~~~a~~r 511 (567)
-+.+++.
T Consensus 365 gm~alre 371 (404)
T KOG0728|consen 365 GMYALRE 371 (404)
T ss_pred hHHHHHH
Confidence 9877653
No 13
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=280.22 Aligned_cols=210 Identities=39% Similarity=0.650 Sum_probs=191.0
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...++++|+|++|++++|++++- |...|.+|+.|.+|. |++||||||||||||++|+++|++.
T Consensus 113 e~~~~it~ddViGqEeAK~kcrl-i~~yLenPe~Fg~WA-----------PknVLFyGppGTGKTm~Akalane~----- 175 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRL-IMEYLENPERFGDWA-----------PKNVLFYGPPGTGKTMMAKALANEA----- 175 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHH-HHHHhhChHHhcccC-----------cceeEEECCCCccHHHHHHHHhccc-----
Confidence 35678999999999999999975 557899999998774 8999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh-hHHHHHHHHHHHHHhhcCcccCC
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~-l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
.++++.+.+.++.++++|+..++++++++.|.+.+| ||+||||+|.++..+.-. +..-..++++.||+.||++..+.
T Consensus 176 -kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aP-civFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene 253 (368)
T COG1223 176 -KVPLLLVKATELIGEHVGDGARRIHELYERARKAAP-CIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE 253 (368)
T ss_pred -CCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCC-eEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC
Confidence 889999999999999999999999999999999986 999999999999877533 33335678999999999999999
Q ss_pred cEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHH---HHHHHHHhccCCCHHHHHHH
Q 047219 431 KVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKA---ELAELATATEEMSGRDIRDV 500 (567)
Q Consensus 431 ~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~---~l~~la~~t~g~s~~dL~~L 500 (567)
.|+.||+||+++.||+++++||...|+|.+|+.++|.+|++.+++.|+.. .++.++..+.|+|++||..-
T Consensus 254 GVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikek 326 (368)
T COG1223 254 GVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEK 326 (368)
T ss_pred ceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHH
Confidence 99999999999999999999999999999999999999999999998643 68999999999999999653
No 14
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-35 Score=286.94 Aligned_cols=225 Identities=34% Similarity=0.592 Sum_probs=205.6
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...|.-+|.||+|++.++++|++.+++||.|||+|+..| ..+|++|+|||+||||||+||+|+||..
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemG--------ikpPKGVIlyG~PGTGKTLLAKAVANqT----- 243 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMG--------IKPPKGVILYGEPGTGKTLLAKAVANQT----- 243 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcC--------CCCCCeeEEeCCCCCchhHHHHHHhccc-----
Confidence 345778999999999999999999999999999999987 8999999999999999999999999998
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~ 428 (567)
...|+.+-++++..+|.|+..+.++++|.-|.+++| +|+||||||.+..++-+. ..+..++..-+||+++|++..
T Consensus 244 -SATFlRvvGseLiQkylGdGpklvRqlF~vA~e~ap-SIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds 321 (440)
T KOG0726|consen 244 -SATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP-SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321 (440)
T ss_pred -chhhhhhhhHHHHHHHhccchHHHHHHHHHHHhcCC-ceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc
Confidence 567999999999999999999999999999999996 999999999999888654 344567777789999999999
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCHH---HHHHHHHhccCCCHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTKA---ELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~~---~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
+++|-||++||+.+.|||+|.+ |+|+.|+|+.||...++.|+..|+..+... .++.+...-..+|++||+++|.+
T Consensus 322 rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictE 401 (440)
T KOG0726|consen 322 RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTE 401 (440)
T ss_pred cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999887644 67778777788999999999999
Q ss_pred HHHHHHHH
Q 047219 504 AERSWASK 511 (567)
Q Consensus 504 a~~~a~~r 511 (567)
|-+.+++.
T Consensus 402 aGllAlRe 409 (440)
T KOG0726|consen 402 AGLLALRE 409 (440)
T ss_pred HhHHHHHH
Confidence 98877664
No 15
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-34 Score=306.17 Aligned_cols=224 Identities=32% Similarity=0.513 Sum_probs=211.7
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCe
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPL 356 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~ 356 (567)
+.|+||+|+.++++.+++.+++|-++|.+|.... .+.+.++|||||||||||+||-++|..+ +.+|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~p--------lr~~~giLLyGppGcGKT~la~a~a~~~------~~~f 729 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCP--------LRLRTGILLYGPPGCGKTLLASAIASNS------NLRF 729 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCC--------cccccceEEECCCCCcHHHHHHHHHhhC------CeeE
Confidence 8999999999999999999999999999999875 6788999999999999999999999999 8889
Q ss_pred EEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEE
Q 047219 357 MYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIA 436 (567)
Q Consensus 357 ~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIa 436 (567)
+.+.++++.++|.|.+++.++.+|..|...+ |||||+||+|+++++|......+..|++++||..||+.+.-..|.|+|
T Consensus 730 isvKGPElL~KyIGaSEq~vR~lF~rA~~a~-PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~a 808 (952)
T KOG0735|consen 730 ISVKGPELLSKYIGASEQNVRDLFERAQSAK-PCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILA 808 (952)
T ss_pred EEecCHHHHHHHhcccHHHHHHHHHHhhccC-CeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEE
Confidence 9999999999999999999999999998776 599999999999999998888899999999999999999999999999
Q ss_pred eeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCH---HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q 047219 437 ATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTK---AELAELATATEEMSGRDIRDVCQQAERSWASK 511 (567)
Q Consensus 437 aTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~---~~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r 511 (567)
+|.+|+.+||+|+| |+|+.+.-+.|+..+|.+|++.+...+.. .+++.++..|+||+|+||..++..|...+.++
T Consensus 809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~ 888 (952)
T KOG0735|consen 809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHE 888 (952)
T ss_pred ecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999886543 37899999999999999999999999999888
Q ss_pred HHhc
Q 047219 512 IIRG 515 (567)
Q Consensus 512 ~i~~ 515 (567)
++..
T Consensus 889 ~l~~ 892 (952)
T KOG0735|consen 889 ILKR 892 (952)
T ss_pred HHHh
Confidence 8753
No 16
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.6e-34 Score=314.96 Aligned_cols=224 Identities=35% Similarity=0.595 Sum_probs=204.9
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
.....++|.|+.|.+++|++|.|.+ .+|++|+.|+++| +..|+++||+||||||||+||+|+|.+.
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lG--------AKiPkGvLL~GPPGTGKTLLAKAiAGEA----- 368 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELG--------AKIPKGVLLVGPPGTGKTLLAKAIAGEA----- 368 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcC--------CcCcCceEEECCCCCcHHHHHHHHhccc-----
Confidence 3445699999999999999999987 6899999999997 8999999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhh----hhHHHHHHHHHHHHHhhcCcc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS----EMHEATRRILSVLLRQIDGFE 427 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~----~l~~~~~~vl~~LL~~ld~~~ 427 (567)
++||+.++++++...+.|....+++.+|..|+.++| ||+||||||.+...++. ......+..+++||..||++.
T Consensus 369 -gVPF~svSGSEFvE~~~g~~asrvr~lf~~ar~~aP-~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 369 -GVPFFSVSGSEFVEMFVGVGASRVRDLFPLARKNAP-SIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred -CCceeeechHHHHHHhcccchHHHHHHHHHhhccCC-eEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 999999999999999999989999999999999996 99999999999988852 233445678999999999999
Q ss_pred cCCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC----HHHHHHHHHhccCCCHHHHHHHH
Q 047219 428 QDKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT----KAELAELATATEEMSGRDIRDVC 501 (567)
Q Consensus 428 ~~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~----~~~l~~la~~t~g~s~~dL~~L~ 501 (567)
....|+|+++||+++.+|++|++ |||+.|.++.|+..+|.+|++.|+++.. ..++.+++..|+||+|+||.++|
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~ 526 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLC 526 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhh
Confidence 99999999999999999999999 9999999999999999999999998743 34677799999999999999999
Q ss_pred HHHHHHHHHH
Q 047219 502 QQAERSWASK 511 (567)
Q Consensus 502 ~~a~~~a~~r 511 (567)
++|+-.++++
T Consensus 527 neaa~~a~r~ 536 (774)
T KOG0731|consen 527 NEAALLAARK 536 (774)
T ss_pred hHHHHHHHHh
Confidence 9999777664
No 17
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-33 Score=275.38 Aligned_cols=227 Identities=33% Similarity=0.548 Sum_probs=209.2
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...|.-+|+||+|++.++++|.+.+.+|+.|++.|+.+| ..+|+++|+|||||||||++||+.|.+.
T Consensus 163 DekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lg--------i~pPKGvLmYGPPGTGKTlmARAcAaqT----- 229 (424)
T KOG0652|consen 163 DEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLG--------IRPPKGVLMYGPPGTGKTLMARACAAQT----- 229 (424)
T ss_pred ccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcC--------CCCCCceEeeCCCCCcHHHHHHHHHHhc-----
Confidence 456778999999999999999999999999999999987 8999999999999999999999999998
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~ 428 (567)
...|..+.++.+...|.|+..+.++..|..|++.+| +||||||+|.+..++.+. ..+..++..-+||..+|++..
T Consensus 230 -~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP-~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss 307 (424)
T KOG0652|consen 230 -NATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAP-TIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS 307 (424)
T ss_pred -cchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCC-eEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC
Confidence 566889999999999999999999999999999986 999999999999887543 345567778889999999999
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
...+-||++||+.+-|||+|++ |+|+.|+|+.|+.+.|..|++.|.+++. +..++++++.+.+|+|+..+++|-+
T Consensus 308 ~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVE 387 (424)
T KOG0652|consen 308 DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVE 387 (424)
T ss_pred ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehh
Confidence 9999999999999999999998 9999999999999999999999999875 3478999999999999999999999
Q ss_pred HHHHHHHHHH
Q 047219 504 AERSWASKII 513 (567)
Q Consensus 504 a~~~a~~r~i 513 (567)
|-|.+++|-.
T Consensus 388 AGMiALRr~a 397 (424)
T KOG0652|consen 388 AGMIALRRGA 397 (424)
T ss_pred hhHHHHhccc
Confidence 9998888743
No 18
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=293.64 Aligned_cols=224 Identities=39% Similarity=0.650 Sum_probs=202.4
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..|.++|+||+|++.++++|++.+.+|+.+|++|+++| ..+|+++||+||||||||++|+++|+++
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G--------l~~pkgvLL~GppGTGKT~LAkalA~~l------ 203 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG--------IDPPRGVLLYGPPGTGKTMLAKAVAHHT------ 203 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC--------CCCCceEEEECCCCCCHHHHHHHHHHhc------
Confidence 46889999999999999999999999999999999887 7899999999999999999999999998
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhh---hhHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS---EMHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~---~l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+.+++.+.++.+..++.|+.+..++.+|..|...+| +||||||||.+..++.+ ......++++.+++..++++...
T Consensus 204 ~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~~~P-~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 204 TATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAP-SIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred CCCEEEEehHHHHHHhcchhHHHHHHHHHHHHhcCC-eEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 678999999999999999999999999999988875 99999999999876532 22345567888999999988777
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
.+++||+|||+++.+|+++++ ||+..|+|+.|+.++|.+|++.++.++. ..++..++..+.||+++||.++|++|
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA 362 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEA 362 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 899999999999999999998 9999999999999999999999988754 33788999999999999999999999
Q ss_pred HHHHHHH
Q 047219 505 ERSWASK 511 (567)
Q Consensus 505 ~~~a~~r 511 (567)
.+.+.++
T Consensus 363 ~~~A~r~ 369 (398)
T PTZ00454 363 GMQAVRK 369 (398)
T ss_pred HHHHHHc
Confidence 9887765
No 19
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-33 Score=273.77 Aligned_cols=224 Identities=33% Similarity=0.590 Sum_probs=204.3
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
..+|.++|.|++|..++++++++.++.|+.|||.|-.+| ..+|++||+|||||||||++|||+|+..
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lg--------idppkgvllygppgtgktl~aravanrt----- 235 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLG--------IDPPKGVLLYGPPGTGKTLCARAVANRT----- 235 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcC--------CCCCCceEEeCCCCCchhHHHHHHhccc-----
Confidence 567999999999999999999999999999999999887 8999999999999999999999999998
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~ 428 (567)
+.-|+.+-++++..+|+|+....++++|+.|+... -||||+||||.+.+.+-+. .....++..-+|+.++|++..
T Consensus 236 -dacfirvigselvqkyvgegarmvrelf~martkk-aciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp 313 (435)
T KOG0729|consen 236 -DACFIRVIGSELVQKYVGEGARMVRELFEMARTKK-ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP 313 (435)
T ss_pred -CceEEeehhHHHHHHHhhhhHHHHHHHHHHhcccc-eEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC
Confidence 66699999999999999999999999999998765 4999999999999887543 233456777788899999999
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCHH---HHHHHHHhccCCCHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTKA---ELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~~---~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
.+++-|+++||+|+.|||+|++ |+|+.++|.+|+++.|..|++.|++.+..+ -++-++..+..-++++|+.+|.+
T Consensus 314 rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcte 393 (435)
T KOG0729|consen 314 RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTE 393 (435)
T ss_pred CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHH
Confidence 9999999999999999999999 999999999999999999999999887643 56778899999999999999999
Q ss_pred HHHHHHH
Q 047219 504 AERSWAS 510 (567)
Q Consensus 504 a~~~a~~ 510 (567)
|-|-+.+
T Consensus 394 agmfair 400 (435)
T KOG0729|consen 394 AGMFAIR 400 (435)
T ss_pred hhHHHHH
Confidence 9886654
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5.9e-32 Score=310.68 Aligned_cols=269 Identities=32% Similarity=0.538 Sum_probs=226.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|++|+|++.+++.|++.+.++++++++|++++ ..+++++|||||||||||++|+++|+++
T Consensus 446 ~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g--------~~~~~giLL~GppGtGKT~lakalA~e~------ 511 (733)
T TIGR01243 446 EVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG--------IRPPKGVLLFGPPGTGKTLLAKAVATES------ 511 (733)
T ss_pred cccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC--------CCCCceEEEECCCCCCHHHHHHHHHHhc------
Confidence 35678999999999999999999999999999999886 7889999999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh-hHHHHHHHHHHHHHhhcCcccCCc
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~-l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
+.+|+.+.++++.++|+|++++.++.+|..|+..++ +||||||||.|.+.++.. .....++++++|+..|+++....+
T Consensus 512 ~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p-~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 512 GANFIAVRGPEILSKWVGESEKAIREIFRKARQAAP-AIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred CCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhcCC-EEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 788999999999999999999999999999998874 999999999999877643 234567899999999999888889
Q ss_pred EEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
++||+|||+++.+|+++++ ||+..+++++|+.++|.+|++.+.++++ ..+++.++..+.||+++||..+|++|..
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~ 670 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAM 670 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998 9999999999999999999999888754 3368999999999999999999999999
Q ss_pred HHHHHHHhcccc----cc---CcccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Q 047219 507 SWASKIIRGQIT----KD---GEQACLPPLQEYIESATNRRRSLLDAAEQSHQNINN 556 (567)
Q Consensus 507 ~a~~r~i~~~i~----~~---~~~~~~~~l~e~le~~e~~~~~li~~al~~~~~~~s 556 (567)
.+.++.+..... .. ..........++.+++...+.++....+.+|.....
T Consensus 671 ~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~ 727 (733)
T TIGR01243 671 AALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAK 727 (733)
T ss_pred HHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 888876542110 00 001112344566666666666665655555554433
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-32 Score=297.04 Aligned_cols=226 Identities=37% Similarity=0.591 Sum_probs=209.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|++++|++.+++.+++.+..+++++++|..++ ..+++++|||||||||||++|+++|+++
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~--------~~~~~giLl~GpPGtGKT~lAkava~~~------ 300 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLG--------LRPPKGVLLYGPPGTGKTLLAKAVALES------ 300 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcC--------CCCCCeeEEECCCCCCHHHHHHHHHhhC------
Confidence 56789999999999999999999999999999998754 6888999999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
+.+|+.+..+++.++|+|+++++++.+|..|+..+| |||||||+|.+...+.........+++++++.++++.....+|
T Consensus 301 ~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~~~p-~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 301 RSRFISVKGSELLSKWVGESEKNIRELFEKARKLAP-SIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred CCeEEEeeCHHHhccccchHHHHHHHHHHHHHcCCC-cEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 788999999999999999999999999999998875 9999999999999988766666689999999999999999999
Q ss_pred EEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhh-----CHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 433 VVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHL-----TKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 433 iVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~-----~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
+||+|||+++.+|+++++ ||+..++|++|+..+|.+|++.++... ...++..+++.+.||+++||..+|++|.
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~ 459 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAA 459 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999842 2457899999999999999999999999
Q ss_pred HHHHHHHH
Q 047219 506 RSWASKII 513 (567)
Q Consensus 506 ~~a~~r~i 513 (567)
+.+.+...
T Consensus 460 ~~~~~~~~ 467 (494)
T COG0464 460 LEALREAR 467 (494)
T ss_pred HHHHHHhc
Confidence 88877764
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.98 E-value=2.1e-31 Score=284.73 Aligned_cols=224 Identities=36% Similarity=0.638 Sum_probs=200.7
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..|.++|++|+|++++++++++.+..++.+|++|+.+| ..+|+++||+||||||||++|+++|+++
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g--------~~~p~gvLL~GppGtGKT~lAkaia~~~------ 189 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG--------IEPPKGVLLYGPPGTGKTLLAKAVAHET------ 189 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC--------CCCCCceEEECCCCCChHHHHHHHHHHh------
Confidence 55789999999999999999999999999999999886 7899999999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhh---HHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l---~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+.+|+.++++.+..+|.|+.+..++.+|..+....+ +||||||||.+...+.+.. ....++.+..++..++++...
T Consensus 190 ~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p-~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 190 NATFIRVVGSELVQKFIGEGARLVRELFELAREKAP-SIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred CCCEEEeehHHHhHhhccchHHHHHHHHHHHHhcCC-eEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 677999999999999999999999999999988764 9999999999987654322 234466778888888888777
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
.+++||+|||+++.++++|++ ||+..|+|+.|+.++|.+|++.++..+. ..++..++..+.||+++||+.+|++|
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA 348 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEA 348 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 899999999999999999997 9999999999999999999999988753 24689999999999999999999999
Q ss_pred HHHHHHH
Q 047219 505 ERSWASK 511 (567)
Q Consensus 505 ~~~a~~r 511 (567)
.+.+.++
T Consensus 349 ~~~a~~~ 355 (389)
T PRK03992 349 GMFAIRD 355 (389)
T ss_pred HHHHHHc
Confidence 9877664
No 23
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.3e-31 Score=286.40 Aligned_cols=360 Identities=27% Similarity=0.425 Sum_probs=267.5
Q ss_pred HHHHHHhCCCCCCccceEEEEecceE---EEEEEecCCCC-cchHHHHHHHhhCceecccCCCceeEEEee-ccccccee
Q 047219 117 EELLKRKGMHYGSCPTFTVAVKGQKV---TIKFQVPPACE-IPQLIANLVSHLGLKVEEHGGGSDMGLRAW-DSAVAWQL 191 (567)
Q Consensus 117 ~~~~~~~g~~~g~~~~~~v~~~g~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~~~~a~~v 191 (567)
+..|.++|+..| |.+.|++. ..+++|+.+|+ .+++....|.|+-+..++ .+.+.+. .++.+.++
T Consensus 34 ~~~~~~~~l~~g------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~-----~~~~~~~p~v~~~~~i 102 (693)
T KOG0730|consen 34 EGAMDKLGLLRG------VLLDGKKRREPVDAVVQDETSELIGRQTMVSRSNLRLQLGR-----LLHSSDCPSVKRPARI 102 (693)
T ss_pred HHHHhhhcCCcc------eEEECccccCCccceeccCCccccchhhheeccchhhcccc-----eecccCCCCcccccee
Confidence 678999999999 44888762 44566655454 466667777777777666 5666652 34455567
Q ss_pred EecCCCCccc-cCCCccccCcccccccchheeeeceeecCCCCceeeeccCcCCHHHHHHHHHHHhhhcc-cccccCccc
Q 047219 192 TLKPPEKQNE-SGGDRAQSGDMNAREGDLCILIFRSLITSDKPEIEFIKKGSLTSEELDALVSVLQLAGR-RIYGLDEPQ 269 (567)
Q Consensus 192 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 269 (567)
.+.|...+.. +.. ..+............+|+..++.. .... .-.+...+....- ....... .....+...
T Consensus 103 ~~l~~~~~~~~i~~-----~~~d~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~-~v~~~t~~~~~~~~~~~ 174 (693)
T KOG0730|consen 103 AVLPVDDTSEGIAG-----ELFDVLERPFLLEALRPLVKGDTF-AGLN-PAEFKVLELDPSP-QVTPDTELSYLGEPAKR 174 (693)
T ss_pred eeeehhhccccchh-----hhhhhhhhhhhhhhhCccccccch-hhhh-hhhhhccccccch-hcCccchhhhcCCCccc
Confidence 7777544321 111 111111222233344555444443 0000 0000000000000 0000000 011111111
Q ss_pred cccCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC
Q 047219 270 LNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM 349 (567)
Q Consensus 270 ~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~ 349 (567)
.....+.++ .+++|...++..+++++.+++.+|.+|..++ .++|+++|+|||||||||.+++++|++.
T Consensus 175 ~~~~~~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g--------~~~prg~Ll~gppg~Gkt~l~~aVa~e~--- 242 (693)
T KOG0730|consen 175 EEEELPEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIG--------IKPPRGLLLYGPPGTGKTFLVRAVANEY--- 242 (693)
T ss_pred ccccccccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcC--------CCCCCCccccCCCCCChHHHHHHHHHHh---
Confidence 111136677 8999999999999999999999999999886 8999999999999999999999999999
Q ss_pred CCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccC
Q 047219 350 PWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 350 ~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+..++.++++++++++.|++++.++..|+++.....+++|||||+|.+.+++..... +..++..+++.++++....
T Consensus 243 ---~a~~~~i~~peli~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~ 318 (693)
T KOG0730|consen 243 ---GAFLFLINGPELISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPD 318 (693)
T ss_pred ---CceeEecccHHHHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCc
Confidence 778999999999999999999999999999999885699999999999998876655 7889999999999999888
Q ss_pred CcEEEEEeeCCCCCCChHHHh-ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS-RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s-Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
.+++||++||+++.|+++++| |||+.+.+..|+..+|.+|++.+++.+. ..++..++..++||+|+||..+|.+|.
T Consensus 319 ~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~ 398 (693)
T KOG0730|consen 319 AKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREAS 398 (693)
T ss_pred CcEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHH
Confidence 999999999999999999998 9999999999999999999999998754 458999999999999999999999999
Q ss_pred HHHHHH
Q 047219 506 RSWASK 511 (567)
Q Consensus 506 ~~a~~r 511 (567)
+.+.++
T Consensus 399 ~~~~r~ 404 (693)
T KOG0730|consen 399 LQATRR 404 (693)
T ss_pred HHHhhh
Confidence 888877
No 24
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-31 Score=290.27 Aligned_cols=224 Identities=33% Similarity=0.552 Sum_probs=205.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
....++|+|+.|.+++|+++.+.+ .+|++|+.|..+| +.-|+++||+||||||||+||+++|.+.
T Consensus 143 ~~~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lG--------akiPkGvlLvGpPGTGKTLLAkAvAgEA------ 207 (596)
T COG0465 143 DQVKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALG--------AKIPKGVLLVGPPGTGKTLLAKAVAGEA------ 207 (596)
T ss_pred cccCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcc--------cccccceeEecCCCCCcHHHHHHHhccc------
Confidence 357799999999999999999977 6899999999987 7899999999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
++||+.++++++...++|-...++|.+|.+|++++| ||+||||||.+...+... .++..+.+++++|..||++..+
T Consensus 208 ~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAkk~aP-~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~ 286 (596)
T COG0465 208 GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN 286 (596)
T ss_pred CCCceeccchhhhhhhcCCCcHHHHHHHHHhhccCC-CeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC
Confidence 999999999999999999999999999999999996 999999999998887532 4455667999999999999988
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
..|++|++||+++-+|++|+| |||+.+.++.||...|.+|++.|+++.. ..++..+++.|.||+++|+.+++++|
T Consensus 287 ~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEA 366 (596)
T COG0465 287 EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEA 366 (596)
T ss_pred CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHH
Confidence 999999999999999999999 9999999999999999999999988743 23677799999999999999999999
Q ss_pred HHHHHHHH
Q 047219 505 ERSWASKI 512 (567)
Q Consensus 505 ~~~a~~r~ 512 (567)
.-.++++-
T Consensus 367 al~aar~n 374 (596)
T COG0465 367 ALLAARRN 374 (596)
T ss_pred HHHHHHhc
Confidence 97766653
No 25
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=8.9e-31 Score=281.45 Aligned_cols=224 Identities=36% Similarity=0.606 Sum_probs=199.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..|..+|+||+|++.+++++++.+..++.+|++|+.++ ..+++++||+||||||||++|+++|+++
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g--------i~~p~gVLL~GPPGTGKT~LAraIA~el------ 241 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIG--------IKPPKGVILYGPPGTGKTLLAKAVANET------ 241 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcC--------CCCCcEEEEECCCCCCHHHHHHHHHHhh------
Confidence 45779999999999999999999999999999999886 7899999999999999999999999998
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
..+|+.+.++++.++|.|+....++.+|..|.... ++||||||||.+..++... .....++.+.+++..++++...
T Consensus 242 ~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 242 SATFLRVVGSELIQKYLGDGPKLVRELFRVAEENA-PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred CCCEEEEecchhhhhhcchHHHHHHHHHHHHHhCC-CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 66789999999999999999999999999998876 4999999999998766432 2234466777888889888777
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
.++.||+|||+++.+++++++ ||+..|+|+.|+.++|.+|++.++.++. ..+++.++..+.||+++||+++|.+|
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA 400 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEA 400 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHH
Confidence 899999999999999999987 9999999999999999999999987764 23688999999999999999999999
Q ss_pred HHHHHHH
Q 047219 505 ERSWASK 511 (567)
Q Consensus 505 ~~~a~~r 511 (567)
.+.|.++
T Consensus 401 ~~~Alr~ 407 (438)
T PTZ00361 401 GLLALRE 407 (438)
T ss_pred HHHHHHh
Confidence 9887665
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=7.1e-30 Score=281.41 Aligned_cols=223 Identities=33% Similarity=0.553 Sum_probs=198.7
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...+.++|+||+|++++++++++.+. ++++++.|.+++ ...|+++||+||||||||++|+++|+++
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~-~l~~~~~~~~~g--------~~~~~giLL~GppGtGKT~la~alA~~~----- 112 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVD-FLKNPSKFTKLG--------AKIPKGVLLVGPPGTGKTLLAKAVAGEA----- 112 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHhcC--------CCCCCcEEEECCCCCCHHHHHHHHHHHc-----
Confidence 34678999999999999999998776 489999998876 6788999999999999999999999998
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~ 428 (567)
+.+++.++++++.+.+.|...+.++.+|+.+...+| +||||||||.+..+++.. ......+++++|+..++++..
T Consensus 113 -~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~~p-~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~ 190 (495)
T TIGR01241 113 -GVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAP-CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT 190 (495)
T ss_pred -CCCeeeccHHHHHHHHhcccHHHHHHHHHHHHhcCC-CEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC
Confidence 788999999999999999999999999999988774 999999999999877652 233456788999999999888
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
..+++||+|||+++.+|++|++ ||+..++++.|+.++|.+|++.++.... ..++..++..+.||+++||+.+|++
T Consensus 191 ~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~e 270 (495)
T TIGR01241 191 NTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNE 270 (495)
T ss_pred CCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHH
Confidence 8899999999999999999998 9999999999999999999999987643 4478899999999999999999999
Q ss_pred HHHHHHH
Q 047219 504 AERSWAS 510 (567)
Q Consensus 504 a~~~a~~ 510 (567)
|...+.+
T Consensus 271 A~~~a~~ 277 (495)
T TIGR01241 271 AALLAAR 277 (495)
T ss_pred HHHHHHH
Confidence 8765543
No 27
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=2.7e-29 Score=273.68 Aligned_cols=217 Identities=24% Similarity=0.350 Sum_probs=185.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
.+..+|++|+|++..|+.+.+....+ +..+... +...|+++||+||||||||++|+++|+++ +
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~---~~~~~~~--------gl~~pkGILL~GPpGTGKTllAkaiA~e~------~ 284 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSF---SKQASNY--------GLPTPRGLLLVGIQGTGKSLTAKAIANDW------Q 284 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHh---hHHHHhc--------CCCCCceEEEECCCCCcHHHHHHHHHHHh------C
Confidence 45688999999999999998765432 2222222 36889999999999999999999999999 8
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhh-hhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS-EMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~-~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
.+++.+++..+.++++|+++.+++.+|..|...+| |||||||||.+...++. .......+++..|+.+++. ...++
T Consensus 285 ~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~~P-~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~--~~~~V 361 (489)
T CHL00195 285 LPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSP-CILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE--KKSPV 361 (489)
T ss_pred CCEEEEEhHHhcccccChHHHHHHHHHHHHHhcCC-cEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc--CCCce
Confidence 89999999999999999999999999999988875 99999999998765432 2344567888999998884 35679
Q ss_pred EEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC-----HHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 433 VVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT-----KAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 433 iVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~-----~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
+||+|||+++.+|+++++ |||..++++.|+.++|.+|++.++.+.. ..+++.++..+.||+++||+++|.+|.
T Consensus 362 ~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~ 441 (489)
T CHL00195 362 FVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAM 441 (489)
T ss_pred EEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 999999999999999998 9999999999999999999999998752 447899999999999999999999988
Q ss_pred HHHHH
Q 047219 506 RSWAS 510 (567)
Q Consensus 506 ~~a~~ 510 (567)
..+..
T Consensus 442 ~~A~~ 446 (489)
T CHL00195 442 YIAFY 446 (489)
T ss_pred HHHHH
Confidence 66543
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=6.2e-29 Score=263.92 Aligned_cols=224 Identities=38% Similarity=0.643 Sum_probs=197.4
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|++|+|++++++++++.+..++.+|++|+.+| ..+|+++||+||||||||++|+++|+++
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g--------~~~p~gvLL~GppGtGKT~lakaia~~l------ 180 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVG--------IEPPKGVLLYGPPGTGKTLLAKAVAHET------ 180 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcC--------CCCCceEEEECCCCCCHHHHHHHHHHhC------
Confidence 45789999999999999999999999999999999886 7889999999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+.+++.+.+..+..+++|+....++.+|..+.... ++||||||+|.+...+... .....++.+..++..++++...
T Consensus 181 ~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~-p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~ 259 (364)
T TIGR01242 181 NATFIRVVGSELVRKYIGEGARLVREIFELAKEKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR 259 (364)
T ss_pred CCCEEecchHHHHHHhhhHHHHHHHHHHHHHHhcC-CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC
Confidence 66788889999999999999999999999988776 4999999999997665432 1233456677888888887767
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCH---HHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTK---AELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~---~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
.++.||+|||+++.+++++++ ||+..++|+.|+.++|.+|++.++..+.. .++..++..+.||+++||+.+|.+|
T Consensus 260 ~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A 339 (364)
T TIGR01242 260 GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEA 339 (364)
T ss_pred CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 899999999999999999997 99999999999999999999998876532 3688999999999999999999999
Q ss_pred HHHHHHH
Q 047219 505 ERSWASK 511 (567)
Q Consensus 505 ~~~a~~r 511 (567)
.+.+.++
T Consensus 340 ~~~a~~~ 346 (364)
T TIGR01242 340 GMFAIRE 346 (364)
T ss_pred HHHHHHh
Confidence 9887664
No 29
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=5.6e-29 Score=271.04 Aligned_cols=227 Identities=29% Similarity=0.466 Sum_probs=191.8
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP- 350 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~- 350 (567)
...|.++|++|+|++.+++++++.+.+++.+|++|+.++ ..+|+++|||||||||||++|+++++++....
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~g--------l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~ 245 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYD--------LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIG 245 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhcc--------CCCCcceEEECCCCCcHHHHHHHHHHhhccccc
Confidence 456889999999999999999999999999999999886 78899999999999999999999999985431
Q ss_pred ---CCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCC---CCcEEEEcCcchhhhhhhhh-hHHHHHHHHHHHHHhh
Q 047219 351 ---WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELP---NGAIIFLDEVDSFAVARDSE-MHEATRRILSVLLRQI 423 (567)
Q Consensus 351 ---~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a---~~~ILfIDEID~L~~~~q~~-l~~~~~~vl~~LL~~l 423 (567)
.....|+.+..+++.++|.|+++..++.+|+.+...+ .++||||||+|.+..++... ..+...+++++|+..+
T Consensus 246 ~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 246 AETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred cccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 1123466777888999999999999999999887642 36999999999998776543 2344567889999999
Q ss_pred cCcccCCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHh-hCHHHHHHHHHhccCCCHHHHHHH
Q 047219 424 DGFEQDKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKH-LTKAELAELATATEEMSGRDIRDV 500 (567)
Q Consensus 424 d~~~~~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~-~~~~~l~~la~~t~g~s~~dL~~L 500 (567)
+++....+++||+|||+++.||++|+| ||+..|+|+.|+.++|.+|++.++.. ++. ... .....|++++++..+
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~~~-l~~~~g~~~a~~~al 402 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--DAD-LAEFDGDREATAAAL 402 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--hHH-HHHhcCCCHHHHHHH
Confidence 999887899999999999999999998 99999999999999999999998764 332 122 344689999999999
Q ss_pred HHHHHHHHH
Q 047219 501 CQQAERSWA 509 (567)
Q Consensus 501 ~~~a~~~a~ 509 (567)
|+++.....
T Consensus 403 ~~~av~~~~ 411 (512)
T TIGR03689 403 IQRAVDHLY 411 (512)
T ss_pred HHHHHHHHh
Confidence 999875443
No 30
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-29 Score=285.76 Aligned_cols=232 Identities=33% Similarity=0.538 Sum_probs=212.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
....+.|++|+|++..+..|+|++..||.+|+.|+.+. ..+|++|||+||||||||++|+++|..+... ..
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~--------itpPrgvL~~GppGTGkTl~araLa~~~s~~-~~ 328 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFN--------ITPPRGVLFHGPPGTGKTLMARALAAACSRG-NR 328 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcc--------cCCCcceeecCCCCCchhHHHHhhhhhhccc-cc
Confidence 45668999999999999999999999999999999876 8999999999999999999999999988543 12
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
.+.|+.-.+.+..++|+|+.+.+++.+|++|+...| .|+|+||||-|++.+..........++..||..|+++...+.|
T Consensus 329 kisffmrkgaD~lskwvgEaERqlrllFeeA~k~qP-SIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqV 407 (1080)
T KOG0732|consen 329 KISFFMRKGADCLSKWVGEAERQLRLLFEEAQKTQP-SIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQV 407 (1080)
T ss_pred ccchhhhcCchhhccccCcHHHHHHHHHHHHhccCc-eEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCce
Confidence 556777788899999999999999999999999885 9999999999999998877777788999999999999999999
Q ss_pred EEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhh----CHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 433 VVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHL----TKAELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 433 iVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~----~~~~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
+||+|||+++.++++|++ ||+++++|++|+.+.|.+|+..+.++. ....+..+++.+.||.++||+.+|.+|..
T Consensus 408 vvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal 487 (1080)
T KOG0732|consen 408 VVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAAL 487 (1080)
T ss_pred EEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhh
Confidence 999999999999999998 999999999999999999999998874 45688999999999999999999999998
Q ss_pred HHHHHHHh
Q 047219 507 SWASKIIR 514 (567)
Q Consensus 507 ~a~~r~i~ 514 (567)
.+.++-.+
T Consensus 488 ~~~~r~~P 495 (1080)
T KOG0732|consen 488 IALRRSFP 495 (1080)
T ss_pred hhhccccC
Confidence 87776543
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=5.3e-30 Score=255.58 Aligned_cols=219 Identities=36% Similarity=0.589 Sum_probs=199.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
...+++|++++|.-.++.++++.|+.++.+|++|.+++ ..+|++++||||||||||++|++++..+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvg--------Ik~Pkg~ll~GppGtGKTlla~~Vaa~m------ 190 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVG--------IKPPKGLLLYGPPGTGKTLLARAVAATM------ 190 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccC--------CCCCceeEEeCCCCCchhHHHHHHHHhc------
Confidence 34568999999999999999999999999999999876 8999999999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+++|+.+..+.+.+++.|++.+.+++.|..|.+..+ ||||+||||.+.+.+... ..+..++++-.|+..|+++...
T Consensus 191 g~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~~~~p-ciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l 269 (388)
T KOG0651|consen 191 GVNFLKVVSSALVDKYIGESARLIRDMFRYAREVIP-CIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL 269 (388)
T ss_pred CCceEEeeHhhhhhhhcccHHHHHHHHHHHHhhhCc-eEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc
Confidence 899999999999999999999999999999999986 999999999998877432 3456778888999999999999
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
+.|-+|+|||+++.|+|+|++ |+++.+++++|+...|.+|++.+.+.+. .-+.+.+.+.++||.++|+++.|.++
T Consensus 270 ~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEa 349 (388)
T KOG0651|consen 270 HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEA 349 (388)
T ss_pred ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccc
Confidence 999999999999999999999 9999999999999999999998876533 33578888899999999999999887
Q ss_pred HH
Q 047219 505 ER 506 (567)
Q Consensus 505 ~~ 506 (567)
=+
T Consensus 350 g~ 351 (388)
T KOG0651|consen 350 GM 351 (388)
T ss_pred cc
Confidence 64
No 32
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-29 Score=264.22 Aligned_cols=260 Identities=32% Similarity=0.525 Sum_probs=216.7
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+++.|+++.|++.+++.+.+.+.+|+.+|++|..+ ..+++++||.||||||||+|++|||.++
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl---------r~p~rglLLfGPpgtGKtmL~~aiAsE~------ 210 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL---------REPVRGLLLFGPPGTGKTMLAKAIATES------ 210 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhcc---------ccccchhheecCCCCchHHHHHHHHhhh------
Confidence 4567999999999999999999999999999999877 5788999999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc--cCC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE--QDK 430 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~--~~~ 430 (567)
+..|+.++++.+.++|.|+.++.++.+|.-|+...| +|+||||||.+..++.+...+...+...+++-.+++.. ...
T Consensus 211 ~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qP-svifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~d 289 (428)
T KOG0740|consen 211 GATFFNISASSLTSKYVGESEKLVRALFKVARSLQP-SVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDD 289 (428)
T ss_pred cceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCC-eEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCC
Confidence 778999999999999999999999999999998875 99999999999999988888888888888888877764 345
Q ss_pred cEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 431 KVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 431 ~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
+|+||+|||.|+.+|+++++||...++|+.|+.+.|..+++.++.. +...++..+++.+.||++.||.++|.+|.+
T Consensus 290 rvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~ 369 (428)
T KOG0740|consen 290 RVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAM 369 (428)
T ss_pred eEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhc
Confidence 8999999999999999999999999999999999999999999875 456689999999999999999999999996
Q ss_pred HHHHHHHhc-ccc-ccCcccCCCcHHHHHHHHHHHHHHHHHHHH
Q 047219 507 SWASKIIRG-QIT-KDGEQACLPPLQEYIESATNRRRSLLDAAE 548 (567)
Q Consensus 507 ~a~~r~i~~-~i~-~~~~~~~~~~l~e~le~~e~~~~~li~~al 548 (567)
.-.+..... .+. ..........+.++-.+++..+......-+
T Consensus 370 ~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l 413 (428)
T KOG0740|consen 370 GPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGL 413 (428)
T ss_pred CchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccCcccc
Confidence 443332221 111 111122223444555555554454444433
No 33
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.96 E-value=3.6e-29 Score=267.04 Aligned_cols=306 Identities=19% Similarity=0.226 Sum_probs=242.2
Q ss_pred eeeeceeecCCCCceeeeccCcCCHHHHHHHHHHHhhhcccccccCccccccCCCCCCcccccCcHHHHHHHHHHHHHhc
Q 047219 221 ILIFRSLITSDKPEIEFIKKGSLTSEELDALVSVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSL 300 (567)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l 300 (567)
+...-|+...+.+...+. -.....++..+...+........ ....++|++|+|.+.++.++.+.+...
T Consensus 197 i~~~~pv~~~g~l~G~v~--~~~~~~~l~~l~~~~~~~~~~~~---------~~a~y~f~~Iig~S~~m~~~~~~akr~- 264 (560)
T COG3829 197 IVNVAPVYADGQLIGVVG--ISKDVSELERLTRELEESEGLLR---------LKAKYTFDDIIGESPAMLRVLELAKRI- 264 (560)
T ss_pred eEeeccEecCCcEEEEEE--eecchHHHHHHHHHHHHHhhhhc---------cccccchhhhccCCHHHHHHHHHHHhh-
Confidence 445556666654433332 11122445555555544322221 446689999999999999999988765
Q ss_pred cChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--CCCCcCeEEechhhHHhhhhchhHHHHHH
Q 047219 301 QSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--PWQGVPLMYVPLEVVMSKYYGESERLLGK 378 (567)
Q Consensus 301 ~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~~~~~~~~~i~~~~l~s~~~G~~~~~l~~ 378 (567)
+..+.+|||.|++||||.++|++||+.+++. ||+.+||..++...+.|.+||+...
T Consensus 265 ------------------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~G---- 322 (560)
T COG3829 265 ------------------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKG---- 322 (560)
T ss_pred ------------------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCc----
Confidence 7889999999999999999999999999875 8889999999999999999998665
Q ss_pred HHHHHhc--------CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC-------CCC
Q 047219 379 VFSLANE--------LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR-------KQD 443 (567)
Q Consensus 379 ~f~~A~~--------~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~-------~~~ 443 (567)
.|+.|.. .+++|+||||||..|+...|.++++++++ .++.+.......+.+|+||+|||+ .+.
T Consensus 323 AFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQE--kei~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~ 400 (560)
T COG3829 323 AFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQE--KEIERVGGTKPIPVDVRIIAATNRNLEKMIAEGT 400 (560)
T ss_pred cccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhh--ceEEecCCCCceeeEEEEEeccCcCHHHHHhcCc
Confidence 3444432 35589999999999999999999999988 777777777777889999999998 568
Q ss_pred CChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHHHHH-------HHHHHHHHh--
Q 047219 444 LDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVCQQAE-------RSWASKIIR-- 514 (567)
Q Consensus 444 Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~~a~-------~~a~~r~i~-- 514 (567)
|+.+|++|+ +++.+.+|++++|.+++..++.+|......++.....++++..+..|.++.| .+..+|.+.
T Consensus 401 FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~ 479 (560)
T COG3829 401 FREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLV 479 (560)
T ss_pred chhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhcc
Confidence 999999999 9999999999999999999999999888888989999999999999999999 566666653
Q ss_pred c---ccccc--------C------c--ccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCC
Q 047219 515 G---QITKD--------G------E--QACLPPLQEYIESATNRRRSLLDAAEQSHQNINNHRTKKQPLDL 566 (567)
Q Consensus 515 ~---~i~~~--------~------~--~~~~~~l~e~le~~e~~~~~li~~al~~~~~~~s~~~~~~~l~~ 566 (567)
+ .++.. . . .....++.+.++..| +.+|..++++|++.++++++.+++|.
T Consensus 480 ~~~~~I~~~~lp~~~l~~k~~~~~~~~~~~~~~l~~~~e~~E---k~~I~~aL~~~~gn~~~aAk~LgIsr 547 (560)
T COG3829 480 ESDGLIDADDLPAFALEEKEPRPETTKQIEVGSLKEALEEYE---KHLIREALERHGGNKSKAAKELGISR 547 (560)
T ss_pred CCcceeehhhcchhhhcccccCcCcccCcccccHHHHHHHHH---HHHHHHHHHHhCCCHHHHHHHhCCCH
Confidence 0 01100 0 0 112235777777777 99999999999999999999999985
No 34
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=3.6e-28 Score=272.45 Aligned_cols=223 Identities=34% Similarity=0.552 Sum_probs=196.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
....++|+||+|.+++++++.+.+ .++++++.|+.++ ...++++||+||||||||++|+++|+++
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv-~~lk~~~~~~~~g--------~~~p~gVLL~GPpGTGKT~LAralA~e~------ 240 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVV-SFLKKPERFTAVG--------AKIPKGVLLVGPPGTGKTLLAKAIAGEA------ 240 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHH-HHHhCHHHHhhcc--------CCCCceEEEECCCCCCHHHHHHHHHHHh------
Confidence 345689999999999999999876 4589999998876 7789999999999999999999999998
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhh---hhHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS---EMHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~---~l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+.++++++++++...+.|.....++.+|..+...+| +||||||||.+...+.. ......+.++++|+..++++..+
T Consensus 241 ~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~~~~P-~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~ 319 (638)
T CHL00176 241 EVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSP-CIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN 319 (638)
T ss_pred CCCeeeccHHHHHHHhhhhhHHHHHHHHHHHhcCCC-cEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC
Confidence 789999999999998989888889999999988775 99999999999866542 22344567889999999998888
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhh---CHHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHL---TKAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~---~~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
.+++||++||+++.+|++|++ ||++.+.++.|+.++|.+|++.+++.. ...++..++..+.||+++||+.++++|
T Consensus 320 ~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneA 399 (638)
T CHL00176 320 KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEA 399 (638)
T ss_pred CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 899999999999999999998 999999999999999999999998763 344788999999999999999999998
Q ss_pred HHHHHHH
Q 047219 505 ERSWASK 511 (567)
Q Consensus 505 ~~~a~~r 511 (567)
...++++
T Consensus 400 al~a~r~ 406 (638)
T CHL00176 400 AILTARR 406 (638)
T ss_pred HHHHHHh
Confidence 7665543
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=1.4e-26 Score=239.10 Aligned_cols=220 Identities=17% Similarity=0.261 Sum_probs=173.1
Q ss_pred CCCCcccc-cCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 275 SEISWENI-AGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 275 ~~~~~~dI-iG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
...+|+++ +|+--...-+...+... .++.....+..+|.+++||||||||||++|++||+++ +
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi----------~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~el------g 173 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHI----------AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKM------G 173 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHH----------HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHc------C
Confidence 34677888 66655555554433221 1111112347899999999999999999999999999 8
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHHhcC----CCCcEEEEcCcchhhhhhhhhhHHHHHHHH-HHHHHhhcCc--
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLANEL----PNGAIIFLDEVDSFAVARDSEMHEATRRIL-SVLLRQIDGF-- 426 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~----a~~~ILfIDEID~L~~~~q~~l~~~~~~vl-~~LL~~ld~~-- 426 (567)
++++.+++.++.++|+|++++.++.+|..|... ..+|||||||||.+.+.+......+..+++ .+|+..+|+.
T Consensus 174 ~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~ 253 (413)
T PLN00020 174 IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTN 253 (413)
T ss_pred CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCcc
Confidence 889999999999999999999999999999753 246999999999999988655455544554 7899988753
Q ss_pred ----------ccCCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHh--hCHHHHHHHHHhccC-
Q 047219 427 ----------EQDKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKH--LTKAELAELATATEE- 491 (567)
Q Consensus 427 ----------~~~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~--~~~~~l~~la~~t~g- 491 (567)
.....|.||+|||+++.|+++|+| ||+..+ ..|+.++|.+|++.+++. +...++.+++..+.|
T Consensus 254 v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 254 VSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSREDVVKLVDTFPGQ 331 (413)
T ss_pred ccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCC
Confidence 345679999999999999999999 998865 589999999999999876 456788888888877
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHH
Q 047219 492 ---MSGRDIRDVCQQAERSWASKI 512 (567)
Q Consensus 492 ---~s~~dL~~L~~~a~~~a~~r~ 512 (567)
|.++--..+..++.+.+..+.
T Consensus 332 ~~Df~GAlrar~yd~~v~~~i~~~ 355 (413)
T PLN00020 332 PLDFFGALRARVYDDEVRKWIAEV 355 (413)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHh
Confidence 566666677777776666655
No 36
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.94 E-value=8.6e-27 Score=249.29 Aligned_cols=265 Identities=20% Similarity=0.247 Sum_probs=216.8
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--CCCCc
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--PWQGV 354 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~~~~~ 354 (567)
..+.+++|.+.+++++++.+... +....+|||+|++||||.++||+||+.+.+. ||+.+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv-------------------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVav 198 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV-------------------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAV 198 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH-------------------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceee
Confidence 46789999999999999999876 7888999999999999999999999999864 88899
Q ss_pred CeEEechhhHHhhhhchhHHHHHHHHHH---HhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc
Q 047219 355 PLMYVPLEVVMSKYYGESERLLGKVFSL---ANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 355 ~~~~i~~~~l~s~~~G~~~~~l~~~f~~---A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
||..++.+.+.+++||+.+..+...-.. .-+.+++|+||||||..|+...|.++++++++ .++.+...+...+.+
T Consensus 199 NcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe--~~~~rvG~~~~i~vd 276 (464)
T COG2204 199 NCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQE--REFERVGGNKPIKVD 276 (464)
T ss_pred ecccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHc--CeeEecCCCccccee
Confidence 9999999999999999865422211100 01445689999999999999999999888876 566666666666789
Q ss_pred EEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 432 VVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 432 viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
|+||++||. .+.|.++|++|+ +++.+..|++++|.++|..++++|......++.....++++..+..|+.|.
T Consensus 277 vRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~ 355 (464)
T COG2204 277 VRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYD 355 (464)
T ss_pred eEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC
Confidence 999999997 567999999999 999999999999999999999999998888888888899999999999999
Q ss_pred H-------HHHHHHHHhccc----cccC----------------cccC-C--CcHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 047219 505 E-------RSWASKIIRGQI----TKDG----------------EQAC-L--PPLQEYIESATNRRRSLLDAAEQSHQNI 554 (567)
Q Consensus 505 ~-------~~a~~r~i~~~i----~~~~----------------~~~~-~--~~l~e~le~~e~~~~~li~~al~~~~~~ 554 (567)
| .++++|...... +.+. .... . .++.+.++.+| +.+|..++..+++.
T Consensus 356 WPGNVREL~N~ver~~il~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~E---r~~I~~aL~~~~g~ 432 (464)
T COG2204 356 WPGNVRELENVVERAVILSEGPEIEVEDLPLEILAPAAEALAGPAGEAALPGLPLGEALAEVE---RQLILQALERTGGN 432 (464)
T ss_pred CChHHHHHHHHHHHHHhcCCccccchhhccccccccccccccccccccccccccHHHHHHHHH---HHHHHHHHHHhCCC
Confidence 9 677777654321 1100 0000 0 13566777777 99999999999999
Q ss_pred HhhhhccCCCCC
Q 047219 555 NNHRTKKQPLDL 566 (567)
Q Consensus 555 ~s~~~~~~~l~~ 566 (567)
++++++.+++++
T Consensus 433 ~~~aA~~LGi~R 444 (464)
T COG2204 433 KSEAAERLGISR 444 (464)
T ss_pred HHHHHHHHCCCH
Confidence 999999888875
No 37
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=8.1e-26 Score=255.55 Aligned_cols=221 Identities=32% Similarity=0.553 Sum_probs=193.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
...+|+++.|.+..++++.+.+.. +..++.|..++ ...++++||+||||||||++|+++++++ +.
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~--------~~~~~gill~G~~G~GKt~~~~~~a~~~------~~ 211 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG--------GKIPKGVLMVGPPGTGKTLLAKAIAGEA------KV 211 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcC--------CCCCCcEEEECCCCCCHHHHHHHHHHHc------CC
Confidence 346799999999999999998764 67788786654 5778899999999999999999999999 78
Q ss_pred CeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCcccCCc
Q 047219 355 PLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 355 ~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
+|+.++++++...+.|.....++.+|..+...+| +||||||||.+...+... ......+++++++..|+++..+..
T Consensus 212 ~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P-~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 212 PFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAP-CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred CEEEEehHHhHHhhhcccHHHHHHHHHHHHhcCC-cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 8999999999999999999999999999987764 999999999998776542 223445688999999999988889
Q ss_pred EEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
++||+|||+++.+|+++++ ||++.+.|+.|+.++|.+|++.+++..+ ..++..++..+.||+++||.++|++|..
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~ 370 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAAL 370 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998 9999999999999999999999998753 3367789999999999999999999987
Q ss_pred HHHHH
Q 047219 507 SWASK 511 (567)
Q Consensus 507 ~a~~r 511 (567)
.++++
T Consensus 371 ~a~r~ 375 (644)
T PRK10733 371 FAARG 375 (644)
T ss_pred HHHHc
Confidence 66643
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.6e-26 Score=238.74 Aligned_cols=230 Identities=30% Similarity=0.463 Sum_probs=195.6
Q ss_pred CCCCCccc--ccCcHHHHHHHHHHH-HHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC
Q 047219 274 KSEISWEN--IAGYDQQKREIEDTI-LLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP 350 (567)
Q Consensus 274 ~~~~~~~d--IiG~~~~k~~L~e~i-~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~ 350 (567)
.|...|++ |+|++..-..+-+.. ..-.--|++.+++| ..--+++|||||||||||++||.|.+.+++.
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lG--------i~HVKGiLLyGPPGTGKTLiARqIGkMLNAr- 283 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLG--------IKHVKGILLYGPPGTGKTLIARQIGKMLNAR- 283 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcC--------ccceeeEEEECCCCCChhHHHHHHHHHhcCC-
Confidence 46667776 579998877665433 22234468888876 7788999999999999999999999999754
Q ss_pred CCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcC-------CCCcEEEEcCcchhhhhhhhh--hHHHHHHHHHHHHH
Q 047219 351 WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANEL-------PNGAIIFLDEVDSFAVARDSE--MHEATRRILSVLLR 421 (567)
Q Consensus 351 ~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~-------a~~~ILfIDEID~L~~~~q~~--l~~~~~~vl~~LL~ 421 (567)
.---++++++.++|+|+++.+++.+|..|.+. ..-.||++||||.+...|.+. ...+...++++||.
T Consensus 284 ----ePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLs 359 (744)
T KOG0741|consen 284 ----EPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLS 359 (744)
T ss_pred ----CCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHH
Confidence 23457899999999999999999999988731 223699999999999988764 34577889999999
Q ss_pred hhcCcccCCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC-------HHHHHHHHHhccCC
Q 047219 422 QIDGFEQDKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT-------KAELAELATATEEM 492 (567)
Q Consensus 422 ~ld~~~~~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~-------~~~l~~la~~t~g~ 492 (567)
.||+.+.-.+++||+-||+.+.+|++|+| ||...+++.+||...|.+|++.|+..|. +.++++++..|..|
T Consensus 360 KmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNf 439 (744)
T KOG0741|consen 360 KMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNF 439 (744)
T ss_pred hcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCC
Confidence 99999999999999999999999999999 9999999999999999999999998753 23789999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhcc
Q 047219 493 SGRDIRDVCQQAERSWASKIIRGQ 516 (567)
Q Consensus 493 s~~dL~~L~~~a~~~a~~r~i~~~ 516 (567)
||++|+.+++.|...|..|.+...
T Consensus 440 SGAEleglVksA~S~A~nR~vk~~ 463 (744)
T KOG0741|consen 440 SGAELEGLVKSAQSFAMNRHVKAG 463 (744)
T ss_pred chhHHHHHHHHHHHHHHHhhhccC
Confidence 999999999999999999988643
No 39
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.93 E-value=7.4e-26 Score=238.82 Aligned_cols=266 Identities=23% Similarity=0.292 Sum_probs=205.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--PWQ 352 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~~~ 352 (567)
+...+.+|||.+.++.++.+.|+.. +....+|||.|++||||..+||+||+.+.+. +|+
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~V-------------------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV 278 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVV-------------------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFV 278 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHH-------------------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCce
Confidence 4678889999999999999999876 7888999999999999999999999999865 899
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
.+||..++.+.+.|++||+....+...+..-+ +.+++|+||||||..|+...|.++++++|+ .++.+...+....
T Consensus 279 ~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQe--gEieRvG~~r~ik 356 (550)
T COG3604 279 KLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQE--GEIERVGGDRTIK 356 (550)
T ss_pred eeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhh--cceeecCCCceeE
Confidence 99999999999999999997664443332211 456789999999999999999999999888 6777777776677
Q ss_pred CcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHH---------------HHHHHHH
Q 047219 430 KKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKA---------------ELAELAT 487 (567)
Q Consensus 430 ~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~---------------~l~~la~ 487 (567)
.+|+||+|||+ .+.|..+|++|+ .++.+.+|++++|.+++..++.+|.++ .++.+..
T Consensus 357 VDVRiIAATNRDL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~ 435 (550)
T COG3604 357 VDVRVIAATNRDLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSS 435 (550)
T ss_pred EEEEEEeccchhHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHc
Confidence 89999999998 668999999999 899999999999999999888765544 4555555
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHh-ccc-c--c----------c------CcccCCC---cHHHHHHHHHHHHHHHH
Q 047219 488 ATEEMSGRDIRDVCQQAERSWASKIIR-GQI-T--K----------D------GEQACLP---PLQEYIESATNRRRSLL 544 (567)
Q Consensus 488 ~t~g~s~~dL~~L~~~a~~~a~~r~i~-~~i-~--~----------~------~~~~~~~---~l~e~le~~e~~~~~li 544 (567)
+.+.-+.++|++++..+...+ .+.+. +.+ . . . ......+ .+.+..+.++ +..|
T Consensus 436 y~wPGNVRELen~veRavlla-~~~~~~~d~~~l~~~~~~~~~~~~~~~~p~~~~~~~~p~~~~l~~~~~~~e---R~~I 511 (550)
T COG3604 436 YEWPGNVRELENVVERAVLLA-GRLTRRGDLCTLELSLSALLWKTLPAPEPSALPEPALPGEHTLREATEEFE---RQLI 511 (550)
T ss_pred CCCCCcHHHHHHHHHHHHHHh-cccCCCcceeehhhhhhccccccCCCCCccccCCccCCCcccchhhhHHHH---HHHH
Confidence 555556666666666655433 11111 110 0 0 0 0011112 3444455444 9999
Q ss_pred HHHHHHHhhHHhhhhccCCCCC
Q 047219 545 DAAEQSHQNINNHRTKKQPLDL 566 (567)
Q Consensus 545 ~~al~~~~~~~s~~~~~~~l~~ 566 (567)
.+++++++++...+++.++++.
T Consensus 512 ~~aL~~~~~~~a~AAr~LGl~~ 533 (550)
T COG3604 512 IAALEETNGNWAGAARRLGLTR 533 (550)
T ss_pred HHHHHHhCCcHHHHHHHhCCCH
Confidence 9999999999998998877753
No 40
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.93 E-value=2e-25 Score=263.01 Aligned_cols=184 Identities=19% Similarity=0.281 Sum_probs=152.4
Q ss_pred ccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh--------------------------
Q 047219 315 CKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY-------------------------- 368 (567)
Q Consensus 315 ~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~-------------------------- 368 (567)
..+|..+|+||||+||||||||+||+|+|.++ ++||+.++++++.+++
T Consensus 1623 lrLGl~pPKGILLiGPPGTGKTlLAKALA~es------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1623 LRLALSPSRGILVIGSIGTGRSYLVKYLATNS------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred HHcCCCCCCceEEECCCCCCHHHHHHHHHHhc------CCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 44568999999999999999999999999999 8999999999988654
Q ss_pred ---------------hchhHH--HHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc---c
Q 047219 369 ---------------YGESER--LLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE---Q 428 (567)
Q Consensus 369 ---------------~G~~~~--~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~---~ 428 (567)
.+..+. .++.+|+.|+.++| |||||||||.+..+... ...+++|+..|++.. .
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SP-CIIFIDEIDaL~~~ds~------~ltL~qLLneLDg~~~~~s 1769 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSP-CIIWIPNIHDLNVNESN------YLSLGLLVNSLSRDCERCS 1769 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCC-eEEEEEchhhcCCCccc------eehHHHHHHHhccccccCC
Confidence 112222 37889999999985 99999999999866211 123678888888753 3
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHH--Hhh--CH--HHHHHHHHhccCCCHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYA--KHL--TK--AELAELATATEEMSGRDIRDV 500 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~--~~~--~~--~~l~~la~~t~g~s~~dL~~L 500 (567)
..+|+||||||+|+.|||||++ |||+.|.++.|+..+|.+++..+. +++ .. .+++.+|..|.||+|+||.++
T Consensus 1770 ~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanL 1849 (2281)
T CHL00206 1770 TRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVAL 1849 (2281)
T ss_pred CCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHH
Confidence 5689999999999999999999 999999999999999999988653 222 21 257899999999999999999
Q ss_pred HHHHHHHHHHH
Q 047219 501 CQQAERSWASK 511 (567)
Q Consensus 501 ~~~a~~~a~~r 511 (567)
|++|...++.+
T Consensus 1850 vNEAaliAirq 1860 (2281)
T CHL00206 1850 TNEALSISITQ 1860 (2281)
T ss_pred HHHHHHHHHHc
Confidence 99999766654
No 41
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=3.9e-21 Score=197.54 Aligned_cols=223 Identities=22% Similarity=0.305 Sum_probs=167.3
Q ss_pred cccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCCcCeE
Q 047219 279 WENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQGVPLM 357 (567)
Q Consensus 279 ~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~~~~~ 357 (567)
+++++|++++|++|++.+.+ +..+++++++|... ..++.+++|+||||||||++|+++++.+.... ....+++
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~-----~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~ 95 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTS-----SNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLL 95 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCC-----CCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceE
Confidence 35799999999999998866 44566666655211 23456799999999999999999999874321 1234689
Q ss_pred EechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEe
Q 047219 358 YVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAA 437 (567)
Q Consensus 358 ~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaa 437 (567)
+++..++.+.++|++......+|+.+. ++||||||+|.|...... .....+.+..|+..|+.. ..+++||++
T Consensus 96 ~v~~~~l~~~~~g~~~~~~~~~l~~a~----ggVLfIDE~~~l~~~~~~--~~~~~e~~~~L~~~me~~--~~~~~vI~a 167 (287)
T CHL00181 96 TVTRDDLVGQYIGHTAPKTKEVLKKAM----GGVLFIDEAYYLYKPDNE--RDYGSEAIEILLQVMENQ--RDDLVVIFA 167 (287)
T ss_pred EecHHHHHHHHhccchHHHHHHHHHcc----CCEEEEEccchhccCCCc--cchHHHHHHHHHHHHhcC--CCCEEEEEe
Confidence 999999999999988877777877654 689999999998643221 123356677888888753 467888888
Q ss_pred eCCCC-----CCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHh------ccCCC-HHHHHHHH
Q 047219 438 TNRKQ-----DLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATA------TEEMS-GRDIRDVC 501 (567)
Q Consensus 438 TN~~~-----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~------t~g~s-~~dL~~L~ 501 (567)
++... .++|+|++||+..++|+.++.+++.+|+..++.. +..+....+... ...+. ++++++++
T Consensus 168 g~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~v 247 (287)
T CHL00181 168 GYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNAL 247 (287)
T ss_pred CCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 86422 3579999999999999999999999999999875 333333333332 12334 89999999
Q ss_pred HHHHHHHHHHHHhc
Q 047219 502 QQAERSWASKIIRG 515 (567)
Q Consensus 502 ~~a~~~a~~r~i~~ 515 (567)
..+....+.|+...
T Consensus 248 e~~~~~~~~r~~~~ 261 (287)
T CHL00181 248 DRARMRQANRIFES 261 (287)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998764
No 42
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.87 E-value=6.6e-21 Score=195.75 Aligned_cols=222 Identities=20% Similarity=0.297 Sum_probs=170.4
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC-CCcCeEE
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-QGVPLMY 358 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-~~~~~~~ 358 (567)
++++|++++|++|.+.+.+ +..++.+.+.|... ..+..+++|+||||||||++|+++++.+....+ ...++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~-----~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~ 95 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAAL-LLVERLRQRLGLAS-----AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS 95 (284)
T ss_pred HhccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCc-----CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE
Confidence 3689999999999998876 66777777765321 234568999999999999999999998754321 1336899
Q ss_pred echhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEee
Q 047219 359 VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAAT 438 (567)
Q Consensus 359 i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaT 438 (567)
++++++.+.++|++...+..+|+.+. +++|||||++.|....+. .....+.+..|+..|+. ...+++||+++
T Consensus 96 v~~~~l~~~~~g~~~~~~~~~~~~a~----~gvL~iDEi~~L~~~~~~--~~~~~~~~~~Ll~~le~--~~~~~~vI~a~ 167 (284)
T TIGR02880 96 VTRDDLVGQYIGHTAPKTKEILKRAM----GGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMEN--QRDDLVVILAG 167 (284)
T ss_pred ecHHHHhHhhcccchHHHHHHHHHcc----CcEEEEechhhhccCCCc--cchHHHHHHHHHHHHhc--CCCCEEEEEeC
Confidence 99999999999998888888888764 699999999998543222 12334566778888874 34678888888
Q ss_pred CCC--C---CCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh----CHHHHHHHHHh-------ccCCCHHHHHHHHH
Q 047219 439 NRK--Q---DLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL----TKAELAELATA-------TEEMSGRDIRDVCQ 502 (567)
Q Consensus 439 N~~--~---~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~----~~~~l~~la~~-------t~g~s~~dL~~L~~ 502 (567)
+.. + .++|+|++||+..|+|+.++.+++.+|+..++++. ..+....+..+ .+.-+.+++++++.
T Consensus 168 ~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve 247 (284)
T TIGR02880 168 YKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAID 247 (284)
T ss_pred CcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 642 2 35899999999999999999999999999988763 34444444444 34457899999999
Q ss_pred HHHHHHHHHHHhc
Q 047219 503 QAERSWASKIIRG 515 (567)
Q Consensus 503 ~a~~~a~~r~i~~ 515 (567)
.+..+.+.|+...
T Consensus 248 ~~~~~~~~r~~~~ 260 (284)
T TIGR02880 248 RARLRQANRLFCD 260 (284)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988754
No 43
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.87 E-value=8.4e-22 Score=206.31 Aligned_cols=256 Identities=16% Similarity=0.178 Sum_probs=174.8
Q ss_pred ccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--CCCCcCeEEe
Q 047219 282 IAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--PWQGVPLMYV 359 (567)
Q Consensus 282 IiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~~~~~~~~~i 359 (567)
|+|.+..++++.+.+... +....+|||+|++||||+++|++||..+.+. +|+.++|..+
T Consensus 1 liG~S~~m~~~~~~~~~~-------------------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~ 61 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL-------------------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAAL 61 (329)
T ss_pred CCcCCHHHHHHHHHHHHH-------------------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCC
Confidence 579999999999988765 5677899999999999999999999988653 3444444444
Q ss_pred chhhHHhhhhchhHHHH-------HHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 360 PLEVVMSKYYGESERLL-------GKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 360 ~~~~l~s~~~G~~~~~l-------~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
+...+.+.+||.....+ ...|+ .+.+++||||||+.|+...|..+.++++. ..+.........+.++
T Consensus 62 ~~~~l~~~lfG~~~g~~~ga~~~~~G~~~----~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~--~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 62 SENLLDSELFGHEAGAFTGAQKRHQGRFE----RADGGTLFLDELATASLLVQEKLLRVIEY--GEFERVGGSQTLQVDV 135 (329)
T ss_pred ChHHHHHHHhccccccccCcccccCCchh----hCCCCEEEeCChHhCCHHHHHHHHHHHHc--CcEEecCCCceeccce
Confidence 44445556666532211 11233 33479999999999998776665554433 1111112222234689
Q ss_pred EEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhc-cCCCHHHHHHHHHHH
Q 047219 433 VVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATAT-EEMSGRDIRDVCQQA 504 (567)
Q Consensus 433 iVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t-~g~s~~dL~~L~~~a 504 (567)
++|++||. .+.++++|++|| ..+.|.+|++++|.+++..++++|......++.... .++++..+..|+++.
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~rl-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~ 214 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLDRL-AFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYH 214 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHHHh-cchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCC
Confidence 99999986 356899999999 678899999999999999998877665555554444 567888888888877
Q ss_pred H-------HHHHHHHHhcc----ccc----------c-----C----c-----cc----------CC-CcHHHHHHHHHH
Q 047219 505 E-------RSWASKIIRGQ----ITK----------D-----G----E-----QA----------CL-PPLQEYIESATN 538 (567)
Q Consensus 505 ~-------~~a~~r~i~~~----i~~----------~-----~----~-----~~----------~~-~~l~e~le~~e~ 538 (567)
| .+.+++.+... +.. . . . .. .. .++.+.++.+|
T Consensus 215 WPGNvrEL~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~E- 293 (329)
T TIGR02974 215 WPGNVRELKNVVERSVYRHGLEEAPIDEIIIDPFASPWRPKQAAPAVDEVNSTPTDLPSPSSIAAAFPLDLKQAQQDYE- 293 (329)
T ss_pred CCchHHHHHHHHHHHHHhCCCCccchhhccccccccccccccccccccccccccccccccccccccccccHHHHHHHHH-
Confidence 7 33344433210 000 0 0 0 00 00 13444555555
Q ss_pred HHHHHHHHHHHHHhhHHhhhhccCCCCC
Q 047219 539 RRRSLLDAAEQSHQNINNHRTKKQPLDL 566 (567)
Q Consensus 539 ~~~~li~~al~~~~~~~s~~~~~~~l~~ 566 (567)
+.+|..++.+++++++++++.+++++
T Consensus 294 --~~~I~~aL~~~~gn~~~aA~~LGisr 319 (329)
T TIGR02974 294 --IELLQQALAEAQFNQRKAAELLGLTY 319 (329)
T ss_pred --HHHHHHHHHHhCCCHHHHHHHhCCCH
Confidence 99999999999999999999999875
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.87 E-value=1.2e-20 Score=191.68 Aligned_cols=222 Identities=25% Similarity=0.339 Sum_probs=163.3
Q ss_pred cccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCCcCeE
Q 047219 279 WENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQGVPLM 357 (567)
Q Consensus 279 ~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~~~~~ 357 (567)
+++++|++.+|+.|++.+.++... ......|.. ..+...+++|+||||||||++|+++|+.+.... ....+++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~-----~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v 78 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLK-----TSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLI 78 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCC-----CCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceE
Confidence 578999999999999988765332 222222211 134457899999999999999999999874321 1244688
Q ss_pred EechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEe
Q 047219 358 YVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAA 437 (567)
Q Consensus 358 ~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaa 437 (567)
.++++++.++++|+....+..+|+.+. ++||||||+|.|....+. ....+.++.|+..++.. ..++++|++
T Consensus 79 ~~~~~~l~~~~~g~~~~~~~~~~~~a~----~~VL~IDE~~~L~~~~~~---~~~~~~i~~Ll~~~e~~--~~~~~vila 149 (261)
T TIGR02881 79 EVERADLVGEYIGHTAQKTREVIKKAL----GGVLFIDEAYSLARGGEK---DFGKEAIDTLVKGMEDN--RNEFVLILA 149 (261)
T ss_pred EecHHHhhhhhccchHHHHHHHHHhcc----CCEEEEechhhhccCCcc---chHHHHHHHHHHHHhcc--CCCEEEEec
Confidence 999999999999999888888887764 689999999999743221 12345667788888753 456777777
Q ss_pred eCCCC-----CCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc---------cCCCHHHHHH
Q 047219 438 TNRKQ-----DLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT---------EEMSGRDIRD 499 (567)
Q Consensus 438 TN~~~-----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t---------~g~s~~dL~~ 499 (567)
++..+ .++|+|++||+..++|+.++.+++.+|++.++.. +..+....+.... ..-+++.+++
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n 229 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRN 229 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHH
Confidence 65422 4789999999889999999999999999998874 3344444443221 1246789999
Q ss_pred HHHHHHHHHHHHHHhc
Q 047219 500 VCQQAERSWASKIIRG 515 (567)
Q Consensus 500 L~~~a~~~a~~r~i~~ 515 (567)
++..|.++.+.|++..
T Consensus 230 ~~e~a~~~~~~r~~~~ 245 (261)
T TIGR02881 230 IIEKAIRRQAVRLLDK 245 (261)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999888887754
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.4e-20 Score=194.89 Aligned_cols=226 Identities=22% Similarity=0.334 Sum_probs=165.0
Q ss_pred CCCCCcccccCcHHHH---HHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC
Q 047219 274 KSEISWENIAGYDQQK---REIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP 350 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k---~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~ 350 (567)
..+-++++++|++..+ .-|+++++ .....+++|||||||||||+|+.||+..
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~---------------------~~~l~SmIl~GPPG~GKTTlA~liA~~~---- 72 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVE---------------------AGHLHSMILWGPPGTGKTTLARLIAGTT---- 72 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHh---------------------cCCCceeEEECCCCCCHHHHHHHHHHhh----
Confidence 3457899999998875 34444443 5677899999999999999999999999
Q ss_pred CCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcC---CCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc
Q 047219 351 WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANEL---PNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE 427 (567)
Q Consensus 351 ~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~---a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~ 427 (567)
+.+|..+++..- ..+.++.+++.++.. ....||||||||.|...+|+.+ |..++
T Consensus 73 --~~~f~~~sAv~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~l-----------Lp~vE--- 129 (436)
T COG2256 73 --NAAFEALSAVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDAL-----------LPHVE--- 129 (436)
T ss_pred --CCceEEeccccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhh-----------hhhhc---
Confidence 777888876432 236678888888543 2368999999999987766544 44443
Q ss_pred cCCcEEEEEee--CCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----h-------CHHHHHHHHHhccCCCH
Q 047219 428 QDKKVVVIAAT--NRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----L-------TKAELAELATATEEMSG 494 (567)
Q Consensus 428 ~~~~viVIaaT--N~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~-------~~~~l~~la~~t~g~s~ 494 (567)
++.+++|+|| |+...++++|+||+ .++++...+.++...+++.-+.. + .++..+.++..+.|
T Consensus 130 -~G~iilIGATTENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G--- 204 (436)
T COG2256 130 -NGTIILIGATTENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG--- 204 (436)
T ss_pred -CCeEEEEeccCCCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc---
Confidence 5789999988 78889999999999 99999999999999999873321 2 24456666665554
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhH-----HhhhhccCCC
Q 047219 495 RDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQEYIESATNRRRSLLDAAEQSHQNI-----NNHRTKKQPL 564 (567)
Q Consensus 495 ~dL~~L~~~a~~~a~~r~i~~~i~~~~~~~~~~~l~e~le~~e~~~~~li~~al~~~~~~-----~s~~~~~~~l 564 (567)
|.+.+++...+.+.. .. .. . .-. .+.++...+++...+++-.+.||++ ||.|..+.+-
T Consensus 205 -D~R~aLN~LE~~~~~--~~-----~~--~-~~~-~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dA 267 (436)
T COG2256 205 -DARRALNLLELAALS--AE-----PD--E-VLI-LELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDA 267 (436)
T ss_pred -hHHHHHHHHHHHHHh--cC-----CC--c-ccC-HHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCH
Confidence 777777766543321 10 10 0 111 3567777777777899999999996 7777776653
No 46
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.85 E-value=5.7e-21 Score=199.98 Aligned_cols=259 Identities=19% Similarity=0.228 Sum_probs=171.9
Q ss_pred cccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--CCCCcCe
Q 047219 279 WENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--PWQGVPL 356 (567)
Q Consensus 279 ~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~~~~~~~ 356 (567)
+++++|.+..++.+.+.+... +..+.+|||+|++||||+++|++||..+.+. +|+.++|
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~-------------------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c 65 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRL-------------------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (326)
T ss_pred cCccEECCHHHHHHHHHHHHH-------------------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeC
Confidence 578999999999999999866 5667899999999999999999999988643 3444444
Q ss_pred EEechhhHHhhhhchhHHHH-------HHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccC
Q 047219 357 MYVPLEVVMSKYYGESERLL-------GKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 357 ~~i~~~~l~s~~~G~~~~~l-------~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
..++...+.+.+||...... ...+ ..+.+++|||||||.|+...|..+...++. ..+.........+
T Consensus 66 ~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l----~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~--~~~~~~g~~~~~~ 139 (326)
T PRK11608 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRF----ERADGGTLFLDELATAPMLVQEKLLRVIEY--GELERVGGSQPLQ 139 (326)
T ss_pred CCCCHHHHHHHHccccccccCCcccccCCch----hccCCCeEEeCChhhCCHHHHHHHHHHHhc--CcEEeCCCCceee
Confidence 44433344555666432111 1122 233479999999999987765554443322 0111111111223
Q ss_pred CcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHh-ccCCCHHHHHHHH
Q 047219 430 KKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATA-TEEMSGRDIRDVC 501 (567)
Q Consensus 430 ~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~-t~g~s~~dL~~L~ 501 (567)
.++++|++|+. .+.++++|++|| ..+.+.+|++++|.+++..+++++......++... ..++++..++.|.
T Consensus 140 ~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~ 218 (326)
T PRK11608 140 VNVRLVCATNADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLL 218 (326)
T ss_pred ccEEEEEeCchhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 47999999976 357999999999 67889999999999999998887755544444333 2467777777777
Q ss_pred HHHH-------HHHHHHHHh---c-cccccC-----------c---c-c---CCC----cHHHHHHHHHHHHHHHHHHHH
Q 047219 502 QQAE-------RSWASKIIR---G-QITKDG-----------E---Q-A---CLP----PLQEYIESATNRRRSLLDAAE 548 (567)
Q Consensus 502 ~~a~-------~~a~~r~i~---~-~i~~~~-----------~---~-~---~~~----~l~e~le~~e~~~~~li~~al 548 (567)
++.| ++.+++.+. + .+.... . . . ... ++.+.++.+| +.+|..++
T Consensus 219 ~y~WPGNvrEL~~vl~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~E---r~~I~~aL 295 (326)
T PRK11608 219 NYRWPGNIRELKNVVERSVYRHGTSEYPLDNIIIDPFKRRPAEEAIAVSETTSLPTLPLDLREWQHQQE---KELLQRSL 295 (326)
T ss_pred hCCCCcHHHHHHHHHHHHHHhcCCCCCchhhcccccccccccccccccccccccccccccHHHHHHHHH---HHHHHHHH
Confidence 7777 334444332 1 010000 0 0 0 001 2444445555 99999999
Q ss_pred HHHhhHHhhhhccCCCCC
Q 047219 549 QSHQNINNHRTKKQPLDL 566 (567)
Q Consensus 549 ~~~~~~~s~~~~~~~l~~ 566 (567)
..++++++++++.+++|+
T Consensus 296 ~~~~gn~~~aA~~LGIsR 313 (326)
T PRK11608 296 QQAKFNQKRAAELLGLTY 313 (326)
T ss_pred HHhCCCHHHHHHHhCCCH
Confidence 999999999999999885
No 47
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.84 E-value=8.5e-21 Score=210.23 Aligned_cols=262 Identities=17% Similarity=0.217 Sum_probs=173.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--PWQ 352 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~~~ 352 (567)
...+|++++|.+..++++.+.+... +....+|||+|++||||+++|+++|..+.+. +|+
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~-------------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv 259 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKL-------------------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFL 259 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHH-------------------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeE
Confidence 4578999999999999999888754 5567889999999999999999999988654 444
Q ss_pred CcCeEEechhhHHhhhhchhHHH-------HHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERL-------LGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG 425 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~-------l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~ 425 (567)
.++|..++...+.+.+||+.... ...+|+. +.+++||||||+.|+...|..+..+.++ ..+....+.
T Consensus 260 ~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~----a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~--~~~~~~g~~ 333 (520)
T PRK10820 260 ALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQ----ANGGSVLLDEIGEMSPRMQAKLLRFLND--GTFRRVGED 333 (520)
T ss_pred EeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhh----cCCCEEEEeChhhCCHHHHHHHHHHHhc--CCcccCCCC
Confidence 55555555445556667653211 1123433 3379999999999998877665554432 112222222
Q ss_pred cccCCcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHH
Q 047219 426 FEQDKKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIR 498 (567)
Q Consensus 426 ~~~~~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~ 498 (567)
.....+++||++|+. .+.++++|++|+ ..+.+.+|++++|.+++..+++++......++.....++++..+.
T Consensus 334 ~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~ 412 (520)
T PRK10820 334 HEVHVDVRVICATQKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNT 412 (520)
T ss_pred cceeeeeEEEEecCCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 223467899999976 346899999999 679999999999999998887766554444443333456666666
Q ss_pred HHHHHHH-------HHHHHHHHh---c-cccccC-------c------ccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 047219 499 DVCQQAE-------RSWASKIIR---G-QITKDG-------E------QACLPPLQEYIESATNRRRSLLDAAEQSHQNI 554 (567)
Q Consensus 499 ~L~~~a~-------~~a~~r~i~---~-~i~~~~-------~------~~~~~~l~e~le~~e~~~~~li~~al~~~~~~ 554 (567)
.|+++.| ++.+.+.+. + .+.... . .....++.+.++.+| +.++.+++..+. .
T Consensus 413 ~L~~y~WPGNvreL~nvl~~a~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~~E---~~~i~~~l~~~~-~ 488 (520)
T PRK10820 413 VLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDAAVAVGEDAMEGSLDEITSRFE---RSVLTRLYRNYP-S 488 (520)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHhCCCCcccHHHcCCcccccccccccccccCCHHHHHHHHH---HHHHHHHHHHCC-C
Confidence 6666666 223333321 1 111110 0 000125666666666 888998888765 5
Q ss_pred HhhhhccCCCCC
Q 047219 555 NNHRTKKQPLDL 566 (567)
Q Consensus 555 ~s~~~~~~~l~~ 566 (567)
++++++.+++|.
T Consensus 489 ~~~aA~~LGisr 500 (520)
T PRK10820 489 TRKLAKRLGVSH 500 (520)
T ss_pred HHHHHHHhCCCH
Confidence 668888888875
No 48
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.84 E-value=5.3e-21 Score=210.91 Aligned_cols=261 Identities=16% Similarity=0.202 Sum_probs=174.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--PWQ 352 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~~~ 352 (567)
...+|++|+|.+..++.+++.+... +....+|||+|++||||+++|++||+.+.+. +|+
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~-------------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv 267 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLY-------------------ARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFV 267 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHH-------------------hCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEE
Confidence 3477999999999999999999765 5677899999999999999999999988553 555
Q ss_pred CcCeEEechhhHHhhhhchhHHHH--------HHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhc
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLL--------GKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQID 424 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l--------~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld 424 (567)
.++|..++.+.+.+.+||+.+..+ ..+|+. +.+++||||||+.|+...|..+.+++++ ..+.....
T Consensus 268 ~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~----A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~--~~~~r~g~ 341 (526)
T TIGR02329 268 AINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEA----AHRGTLFLDEIGEMPLPLQTRLLRVLEE--REVVRVGG 341 (526)
T ss_pred EeccccCChhHHHHHhcCCcccccccccccccccchhh----cCCceEEecChHhCCHHHHHHHHHHHhc--CcEEecCC
Confidence 555555555566777888644321 123332 3479999999999998877766655543 12222222
Q ss_pred CcccCCcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHH------------HH-
Q 047219 425 GFEQDKKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAEL------------AE- 484 (567)
Q Consensus 425 ~~~~~~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l------------~~- 484 (567)
....+.++++|++||. .+.|+++|++|+ ..+.+.+|++++|.+++..+++++..... ..
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~ 420 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVL 420 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 2233457899999986 346889999999 78999999999999999988877544322 22
Q ss_pred ------HHHhccCCCHHHHHHHHHHHHHHHHHHHHhccccccCc-----------cc---CCCcHHHHHHHHHHHHHHHH
Q 047219 485 ------LATATEEMSGRDIRDVCQQAERSWASKIIRGQITKDGE-----------QA---CLPPLQEYIESATNRRRSLL 544 (567)
Q Consensus 485 ------la~~t~g~s~~dL~~L~~~a~~~a~~r~i~~~i~~~~~-----------~~---~~~~l~e~le~~e~~~~~li 544 (567)
+..+.|..+-++|++++.++....... -.+.++.+.. .. ....+. ..++.++.+|
T Consensus 421 ~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~-~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~l~----~~~~~Er~~I 495 (526)
T TIGR02329 421 AGVADPLQRYPWPGNVRELRNLVERLALELSAM-PAGALTPDVLRALAPELAEASGKGKTSALSLR----ERSRVEALAV 495 (526)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhcccC-CCCccCHHHhhhhchhhcccccccccCccchH----HHHHHHHHHH
Confidence 444444444555555544443221100 0001111100 00 001222 2234459999
Q ss_pred HHHHHHHhhHHhhhhccCCCCC
Q 047219 545 DAAEQSHQNINNHRTKKQPLDL 566 (567)
Q Consensus 545 ~~al~~~~~~~s~~~~~~~l~~ 566 (567)
..++.+++++++++++.+++|+
T Consensus 496 ~~aL~~~~Gn~~~aA~~LGIsR 517 (526)
T TIGR02329 496 RAALERFGGDRDAAAKALGISR 517 (526)
T ss_pred HHHHHHcCCCHHHHHHHhCCCH
Confidence 9999999999999999999985
No 49
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.84 E-value=8.6e-21 Score=209.96 Aligned_cols=260 Identities=20% Similarity=0.227 Sum_probs=173.9
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--CCCCcC
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--PWQGVP 355 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~~~~~~ 355 (567)
.+.+++|.+..++++.+.+... +..+.+|||+|++||||+++|++||+.+.+. +|+.++
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~-------------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~ 245 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV-------------------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLN 245 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH-------------------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEE
Confidence 6789999999999999999865 6778899999999999999999999998654 333444
Q ss_pred eEEechhhHHhhhhchhHHHHH-------HHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCccc
Q 047219 356 LMYVPLEVVMSKYYGESERLLG-------KVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 356 ~~~i~~~~l~s~~~G~~~~~l~-------~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~ 428 (567)
|..++.+.+.+.+||+....+. ..|+ .+.+++|||||||.|+...|..+.++++. ..+....+....
T Consensus 246 c~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~----~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~--~~~~~~g~~~~~ 319 (509)
T PRK05022 246 CAALPESLAESELFGHVKGAFTGAISNRSGKFE----LADGGTLFLDEIGELPLALQAKLLRVLQY--GEIQRVGSDRSL 319 (509)
T ss_pred cccCChHHHHHHhcCccccccCCCcccCCcchh----hcCCCEEEecChhhCCHHHHHHHHHHHhc--CCEeeCCCCcce
Confidence 4444444445566775322111 1233 23479999999999997766655544332 111111111223
Q ss_pred CCcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHH
Q 047219 429 DKKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVC 501 (567)
Q Consensus 429 ~~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~ 501 (567)
..++++|++||. .+.|.++|++|+ ..+.|.+|++++|.+++..+++++......++.....+++...+..|.
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~ 398 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 458999999986 356999999999 789999999999999999888776555444443333456666666666
Q ss_pred HHHH-------HHHHHHHHh---c-------cccccC---c-----------c----cCCCcHHHHHHHHHHHHHHHHHH
Q 047219 502 QQAE-------RSWASKIIR---G-------QITKDG---E-----------Q----ACLPPLQEYIESATNRRRSLLDA 546 (567)
Q Consensus 502 ~~a~-------~~a~~r~i~---~-------~i~~~~---~-----------~----~~~~~l~e~le~~e~~~~~li~~ 546 (567)
++.| ++.+++... + .++... . . ....++.+.++.+| +.+|.+
T Consensus 399 ~y~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~E---r~~I~~ 475 (509)
T PRK05022 399 AYDWPGNVRELEHVISRAALLARARGAGRIVTLEAQHLDLPAEVALPPPEAAAAPAAVVSQNLREATEAFQ---RQLIRQ 475 (509)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHcCcccccccCccccccccccccccCHHHHHHHHH---HHHHHH
Confidence 6665 233333221 1 010000 0 0 00113445555555 999999
Q ss_pred HHHHHhhHHhhhhccCCCCC
Q 047219 547 AEQSHQNINNHRTKKQPLDL 566 (567)
Q Consensus 547 al~~~~~~~s~~~~~~~l~~ 566 (567)
++.+++++++++++.++++.
T Consensus 476 aL~~~~gn~~~aA~~LGisr 495 (509)
T PRK05022 476 ALAQHQGNWAAAARALELDR 495 (509)
T ss_pred HHHHcCCCHHHHHHHhCCCH
Confidence 99999999999999999875
No 50
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.83 E-value=1.3e-20 Score=207.70 Aligned_cols=259 Identities=19% Similarity=0.223 Sum_probs=173.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHH--------hC
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQ--------AG 347 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~--------l~ 347 (567)
..+|++|+|.+..++++++.+... +....+|||+|++||||+++|++||+. +.
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~-------------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~ 275 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLY-------------------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQG 275 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHH-------------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCc
Confidence 357999999999999999998765 567789999999999999999999998 44
Q ss_pred CC--CCCCcCeEEechhhHHhhhhchhHHHHH--------HHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHH
Q 047219 348 AM--PWQGVPLMYVPLEVVMSKYYGESERLLG--------KVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILS 417 (567)
Q Consensus 348 ~~--~~~~~~~~~i~~~~l~s~~~G~~~~~l~--------~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~ 417 (567)
+. +|+.++|..++.+.+.+.+||+.+..+. .+|+ .+.+++||||||+.|+...|..+.+++++ .
T Consensus 276 r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e----~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e--~ 349 (538)
T PRK15424 276 KKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFE----IAHGGTLFLDEIGEMPLPLQTRLLRVLEE--K 349 (538)
T ss_pred cCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchh----ccCCCEEEEcChHhCCHHHHHHHHhhhhc--C
Confidence 32 4555555555555667778886443211 2333 33479999999999998877766655443 1
Q ss_pred HHHHhhcCcccCCcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHH--------
Q 047219 418 VLLRQIDGFEQDKKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAEL-------- 482 (567)
Q Consensus 418 ~LL~~ld~~~~~~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l-------- 482 (567)
.+.........+.++++|++||. .+.|+++|++|+ ..+.+.+|++++|.+++..+++++.....
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~ 428 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLAALSAPFS 428 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCC
Confidence 22222222234567899999986 346889999999 88999999999999999988876544321
Q ss_pred -----------HHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhccccccCc-------ccCCCcHHHHHHHHHHHHHHHH
Q 047219 483 -----------AELATATEEMSGRDIRDVCQQAERSWASKIIRGQITKDGE-------QACLPPLQEYIESATNRRRSLL 544 (567)
Q Consensus 483 -----------~~la~~t~g~s~~dL~~L~~~a~~~a~~r~i~~~i~~~~~-------~~~~~~l~e~le~~e~~~~~li 544 (567)
..+..+.|..+.++|++++..+......... ..++.... ......+. ... .++..|
T Consensus 429 ~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~-~~i~~~~l~~~~~~~~~~~~~~~--~~~---~Er~~I 502 (538)
T PRK15424 429 AALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPT-PDLTPQFLQLLLPELARESAKTP--APR---LLAATL 502 (538)
T ss_pred HHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCc-CccCHHHhhhhcccccccccccc--hhH---HHHHHH
Confidence 3344444555556666666554432110000 01110000 00000110 111 247899
Q ss_pred HHHHHHHhhHHhhhhccCCCCC
Q 047219 545 DAAEQSHQNINNHRTKKQPLDL 566 (567)
Q Consensus 545 ~~al~~~~~~~s~~~~~~~l~~ 566 (567)
.+++.+++++++++++.+++|+
T Consensus 503 ~~~L~~~~Gn~~~aA~~LGIsR 524 (538)
T PRK15424 503 QQALERFNGDKTAAANYLGISR 524 (538)
T ss_pred HHHHHHhCCCHHHHHHHhCCCH
Confidence 9999999999999999999985
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=1.8e-19 Score=175.87 Aligned_cols=196 Identities=22% Similarity=0.299 Sum_probs=124.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
...+.+|+|++|+++.+..+.-.+...... .....++|||||||+||||||+.||+++
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r----------------~~~l~h~lf~GPPG~GKTTLA~IIA~e~------ 74 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKR----------------GEALDHMLFYGPPGLGKTTLARIIANEL------ 74 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCT----------------TS---EEEEESSTTSSHHHHHHHHHHHC------
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhc----------------CCCcceEEEECCCccchhHHHHHHHhcc------
Confidence 345569999999999999987766543221 3456799999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc-----
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE----- 427 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~----- 427 (567)
+.+|..++++.+... ..+..++... .++.||||||||.|....|+.+..++++. . +..+-+..
T Consensus 75 ~~~~~~~sg~~i~k~------~dl~~il~~l---~~~~ILFIDEIHRlnk~~qe~LlpamEd~--~-idiiiG~g~~ar~ 142 (233)
T PF05496_consen 75 GVNFKITSGPAIEKA------GDLAAILTNL---KEGDILFIDEIHRLNKAQQEILLPAMEDG--K-IDIIIGKGPNARS 142 (233)
T ss_dssp T--EEEEECCC--SC------HHHHHHHHT-----TT-EEEECTCCC--HHHHHHHHHHHHCS--E-EEEEBSSSSS-BE
T ss_pred CCCeEeccchhhhhH------HHHHHHHHhc---CCCcEEEEechhhccHHHHHHHHHHhccC--e-EEEEeccccccce
Confidence 777888877543221 1222333332 24689999999999877655554444320 0 00000100
Q ss_pred ---cCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHH
Q 047219 428 ---QDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDV 500 (567)
Q Consensus 428 ---~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L 500 (567)
.-.++.+|+||++.+.+...|+.||.....+..++.++...|++..+.. +..+....++..+.| +++-..++
T Consensus 143 ~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrl 221 (233)
T PF05496_consen 143 IRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRL 221 (233)
T ss_dssp EEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHH
T ss_pred eeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHH
Confidence 1146999999999999999999999888899999999999999876654 456788889988876 67665555
Q ss_pred HHH
Q 047219 501 CQQ 503 (567)
Q Consensus 501 ~~~ 503 (567)
++.
T Consensus 222 l~r 224 (233)
T PF05496_consen 222 LRR 224 (233)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 52
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.82 E-value=2.4e-20 Score=211.98 Aligned_cols=261 Identities=16% Similarity=0.172 Sum_probs=170.2
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--CCCC
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--PWQG 353 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~~~~ 353 (567)
..+|++++|.+..++++.+.+... +....+|||+|++||||+++|++||+.+.+. +|+.
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~-------------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~ 381 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA-------------------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIA 381 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH-------------------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEE
Confidence 457999999999999999988765 5667789999999999999999999998643 4444
Q ss_pred cCeEEechhhHHhhhhchhHHH----HHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccC
Q 047219 354 VPLMYVPLEVVMSKYYGESERL----LGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~----l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
++|..++.+.+.+.+||+.... ....| +.+.+++||||||+.|+...|..+.+++++ ..+.........+
T Consensus 382 vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~----~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~--~~~~~~~~~~~~~ 455 (638)
T PRK11388 382 VNCQLYPDEALAEEFLGSDRTDSENGRLSKF----ELAHGGTLFLEKVEYLSPELQSALLQVLKT--GVITRLDSRRLIP 455 (638)
T ss_pred EECCCCChHHHHHHhcCCCCcCccCCCCCce----eECCCCEEEEcChhhCCHHHHHHHHHHHhc--CcEEeCCCCceEE
Confidence 4444444445566777753100 00112 234479999999999987766655444322 0111111111123
Q ss_pred CcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHH
Q 047219 430 KKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 430 ~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~ 502 (567)
.++++|+||+. ...|+++|++|+ ..+.+.+|++++|.+++..+++++......++... .+++...+..|.+
T Consensus 456 ~~~riI~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~-~~~s~~a~~~L~~ 533 (638)
T PRK11388 456 VDVRVIATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTR-LKIDDDALARLVS 533 (638)
T ss_pred eeEEEEEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHc
Confidence 47899999986 357999999999 88999999999999999988877654433333222 2456666666666
Q ss_pred HHH-------HHHHHHHHh---c-cccccCc-----c-c-----CCCcH--HHHHHHHHHHHHHHHHHHHHHHhhHHhhh
Q 047219 503 QAE-------RSWASKIIR---G-QITKDGE-----Q-A-----CLPPL--QEYIESATNRRRSLLDAAEQSHQNINNHR 558 (567)
Q Consensus 503 ~a~-------~~a~~r~i~---~-~i~~~~~-----~-~-----~~~~l--~e~le~~e~~~~~li~~al~~~~~~~s~~ 558 (567)
+.| ++.+++.+. + .++.+.. . . ....+ ...++++| +..|.+++.+++++++++
T Consensus 534 y~WPGNvreL~~~l~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~~~~~~~~~~l~~~E---~~~i~~al~~~~gn~~~a 610 (638)
T PRK11388 534 YRWPGNDFELRSVIENLALSSDNGRIRLSDLPEHLFTEQATDDVSATRLSTSLSLAELE---KEAIINAAQVCGGRIQEM 610 (638)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCCeecHHHCchhhhcccccccccccccccchhHHHHH---HHHHHHHHHHhCCCHHHH
Confidence 665 233333221 1 1110000 0 0 00011 12244444 999999999999999999
Q ss_pred hccCCCCC
Q 047219 559 TKKQPLDL 566 (567)
Q Consensus 559 ~~~~~l~~ 566 (567)
++.+++++
T Consensus 611 A~~LGisR 618 (638)
T PRK11388 611 AALLGIGR 618 (638)
T ss_pred HHHHCCCH
Confidence 99999885
No 53
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=7.2e-20 Score=184.12 Aligned_cols=195 Identities=28% Similarity=0.411 Sum_probs=156.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCC---CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGA---MPW 351 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~---~~~ 351 (567)
-.--|+.++--...|+++...+...+...+.-. ++. -....+-+||+||||||||+|++++|+.+.- ..+
T Consensus 137 F~glWEsLiyds~lK~~ll~Ya~s~l~fsek~v----ntn---lIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y 209 (423)
T KOG0744|consen 137 FDGLWESLIYDSNLKERLLSYAASALLFSEKKV----NTN---LITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRY 209 (423)
T ss_pred hhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCC----CCc---eeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCcc
Confidence 334688899889999999887765544433211 100 1345677999999999999999999999852 244
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcC--CCCc--EEEEcCcchhhhhhhhhhH----HHHHHHHHHHHHhh
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANEL--PNGA--IIFLDEVDSFAVARDSEMH----EATRRILSVLLRQI 423 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~--a~~~--ILfIDEID~L~~~~q~~l~----~~~~~vl~~LL~~l 423 (567)
....++.+++..+.++||+++.+.+..+|++..+. .+++ .++|||+++|+..|..... .-.-|+++.+|+++
T Consensus 210 ~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl 289 (423)
T KOG0744|consen 210 YKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL 289 (423)
T ss_pred ccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH
Confidence 46678999999999999999999999999987643 1233 4569999999988754322 22458899999999
Q ss_pred cCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh
Q 047219 424 DGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 424 d~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~ 476 (567)
|.++...+|++++|+|-.+.+|.++..|-|.+.++++|+...+.+|++..+..
T Consensus 290 DrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 290 DRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred HHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987654
No 54
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.82 E-value=2.4e-20 Score=207.79 Aligned_cols=267 Identities=19% Similarity=0.207 Sum_probs=169.1
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
....++++|+|.+..++++.+.+... +....+|||+||+||||+++|++||+.+.+. +
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~-------------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~---~ 247 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVV-------------------ARSNSTVLLRGESGTGKELIAKAIHYLSPRA---K 247 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHH-------------------hCcCCCEEEECCCCccHHHHHHHHHHhCCCC---C
Confidence 34578999999999999999998765 5667899999999999999999999998643 3
Q ss_pred cCeEEechh-----hHHhhhhchhHHHHHHHHH---HHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcC
Q 047219 354 VPLMYVPLE-----VVMSKYYGESERLLGKVFS---LANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG 425 (567)
Q Consensus 354 ~~~~~i~~~-----~l~s~~~G~~~~~l~~~f~---~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~ 425 (567)
.+|+.++|. .+.+.+||+....+..... .....+.+++||||||+.|+...|..+..+++. ..+......
T Consensus 248 ~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~--~~~~~~~~~ 325 (534)
T TIGR01817 248 RPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQE--GEFERVGGN 325 (534)
T ss_pred CCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhc--CcEEECCCC
Confidence 455555554 4455566643221110000 001233479999999999987766555444322 011111111
Q ss_pred cccCCcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHH
Q 047219 426 FEQDKKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIR 498 (567)
Q Consensus 426 ~~~~~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~ 498 (567)
...+.++++|++|+. ...|+++|++|+ ..+.+.+|++++|.+++..+++++......++... .+++...+.
T Consensus 326 ~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~-~~~s~~a~~ 403 (534)
T TIGR01817 326 RTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRI-NVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRP-LTITPSAIR 403 (534)
T ss_pred ceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHh-cCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCC-CCCCHHHHH
Confidence 122347899999976 357999999999 78889999999999999888877654433333322 356666666
Q ss_pred HHHHHHH-------HHHHHHHHh---c-cccccCcc-------------c------------------C-C---CcHHHH
Q 047219 499 DVCQQAE-------RSWASKIIR---G-QITKDGEQ-------------A------------------C-L---PPLQEY 532 (567)
Q Consensus 499 ~L~~~a~-------~~a~~r~i~---~-~i~~~~~~-------------~------------------~-~---~~l~e~ 532 (567)
.|.++.| ++.+++.+. + .++.+... . . . .+....
T Consensus 404 ~L~~~~WPGNvrEL~~v~~~a~~~~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (534)
T TIGR01817 404 VLMSCKWPGNVRELENCLERTATLSRSGTITRSDFSCQSGQCLSPMLAKTCPHGHISIDPLAGTTPPHSPASAALPGEPG 483 (534)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhCCCCcccHHHCchhhccccccccccccccccccccccccccccccccccccccccc
Confidence 6666665 233333321 1 11100000 0 0 0 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCC
Q 047219 533 IESATNRRRSLLDAAEQSHQNINNHRTKKQPLDL 566 (567)
Q Consensus 533 le~~e~~~~~li~~al~~~~~~~s~~~~~~~l~~ 566 (567)
+...+..++..|..++..++++++++++.+++++
T Consensus 484 ~~~~~~~Er~~i~~aL~~~~gn~~~aA~~LGisr 517 (534)
T TIGR01817 484 LSGPTLSERERLIAALEQAGWVQAKAARLLGMTP 517 (534)
T ss_pred chhHHHHHHHHHHHHHHHhCCCHHHHHHHHCCCH
Confidence 1112223488999999999999999999999875
No 55
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.81 E-value=3.3e-19 Score=160.32 Aligned_cols=130 Identities=36% Similarity=0.624 Sum_probs=114.6
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhh
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVAR 404 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~ 404 (567)
|||+||||||||++|+.+++.+ +.+++.+++..+.+.+.++..+.+..+|..+.....++||||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhc------ccccccccccccccccccccccccccccccccccccceeeeeccchhccccc
Confidence 6899999999999999999999 7889999999999999999999999999999877634999999999999887
Q ss_pred hhhhHHHHHHHHHHHHHhhcCcccC-CcEEEEEeeCCCCCCChHHH-hccceEEEecC
Q 047219 405 DSEMHEATRRILSVLLRQIDGFEQD-KKVVVIAATNRKQDLDPALI-SRFDSMITFGL 460 (567)
Q Consensus 405 q~~l~~~~~~vl~~LL~~ld~~~~~-~~viVIaaTN~~~~Ld~aL~-sRf~~~I~i~~ 460 (567)
+..........+..|+..++..... .+++||++||.++.+++.++ +||+..++++.
T Consensus 75 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 75 QPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp STSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 4445566677888999999887654 57999999999999999999 99999998863
No 56
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.80 E-value=3.5e-19 Score=203.89 Aligned_cols=261 Identities=18% Similarity=0.258 Sum_probs=172.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcC
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVP 355 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~ 355 (567)
+..|++++|.+..++.+.+.+... +....+|||+||+|||||++|++||+.+.+. +.+
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~-------------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~---~~~ 429 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV-------------------AQSDSTVLILGETGTGKELIARAIHNLSGRN---NRR 429 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH-------------------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCC---CCC
Confidence 357889999999999999988765 5667899999999999999999999988644 345
Q ss_pred eEEechh-----hHHhhhhchhHH--------HHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHh
Q 047219 356 LMYVPLE-----VVMSKYYGESER--------LLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQ 422 (567)
Q Consensus 356 ~~~i~~~-----~l~s~~~G~~~~--------~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ 422 (567)
|+.++|. .+.+.+||.... ..+ .|+ .+.+++||||||+.|....|..+..+++. ..+...
T Consensus 430 ~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g-~le----~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~--~~~~~~ 502 (686)
T PRK15429 430 MVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIG-RFE----LADKSSLFLDEVGDMPLELQPKLLRVLQE--QEFERL 502 (686)
T ss_pred eEEEecccCChhHhhhhhcCcccccccccccchhh-HHH----hcCCCeEEEechhhCCHHHHHHHHHHHHh--CCEEeC
Confidence 5555554 445566664221 122 233 23479999999999987766655444432 111111
Q ss_pred hcCcccCCcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHH
Q 047219 423 IDGFEQDKKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGR 495 (567)
Q Consensus 423 ld~~~~~~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~ 495 (567)
........++++|++|+. ...|+.+|++|+ ..+.|.+|++++|.+++..+++++......++.....+++..
T Consensus 503 g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~ 581 (686)
T PRK15429 503 GSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAE 581 (686)
T ss_pred CCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHH
Confidence 111123467899999986 346889999999 788999999999999999888877655555554445567777
Q ss_pred HHHHHHHHHH-------HHHHHHHHh---c-cccccCcc-----cCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHh---
Q 047219 496 DIRDVCQQAE-------RSWASKIIR---G-QITKDGEQ-----ACLPPLQEYIESATNRRRSLLDAAEQSHQNINN--- 556 (567)
Q Consensus 496 dL~~L~~~a~-------~~a~~r~i~---~-~i~~~~~~-----~~~~~l~e~le~~e~~~~~li~~al~~~~~~~s--- 556 (567)
.++.|.++.| ++.+++.+. + .+..+... .........+...++.++.+|.+++++++++++
T Consensus 582 al~~L~~y~WPGNvrEL~~~i~~a~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~~I~~aL~~~~gn~~~~~ 661 (686)
T PRK15429 582 TLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDITLPEPETPPAATVVAQEGEDEYQLIVRVLKETNGVVAGPK 661 (686)
T ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHhCCCCcccccCchhhcccccccccccccccHHHHHHHHHHHHHHHcCCCcccHH
Confidence 7777777777 333444332 1 11111000 000000000011123448999999999999875
Q ss_pred hhhccCCCCC
Q 047219 557 HRTKKQPLDL 566 (567)
Q Consensus 557 ~~~~~~~l~~ 566 (567)
.+++.+++++
T Consensus 662 ~aA~~LGi~R 671 (686)
T PRK15429 662 GAAQRLGLKR 671 (686)
T ss_pred HHHHHhCCCH
Confidence 9999888875
No 57
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.2e-17 Score=172.27 Aligned_cols=208 Identities=31% Similarity=0.462 Sum_probs=157.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
+.-.+++++-.....+.|++....- .+ ......+-++||||||||||||++|+-||..+ ++
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aT-aN------------TK~h~apfRNilfyGPPGTGKTm~ArelAr~S------Gl 410 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIAT-AN------------TKKHQAPFRNILFYGPPGTGKTMFARELARHS------GL 410 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHh-cc------------cccccchhhheeeeCCCCCCchHHHHHHHhhc------CC
Confidence 3344777777777777776654321 11 01123455899999999999999999999999 66
Q ss_pred CeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhh-hhHHHHHHHHHHHHHhhcCcccCCcEE
Q 047219 355 PLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS-EMHEATRRILSVLLRQIDGFEQDKKVV 433 (567)
Q Consensus 355 ~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~-~l~~~~~~vl~~LL~~ld~~~~~~~vi 433 (567)
.+..+.+.++.- +-.+.-..+..+|+-++....+-+|||||.|.+.-++.. ...+..+..++.||---. ....+++
T Consensus 411 DYA~mTGGDVAP-lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG--dqSrdiv 487 (630)
T KOG0742|consen 411 DYAIMTGGDVAP-LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSRDIV 487 (630)
T ss_pred ceehhcCCCccc-cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc--ccccceE
Confidence 665555544321 222344678899999998888889999999999877764 456666777777764322 2467899
Q ss_pred EEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhC------------------------------HHHHH
Q 047219 434 VIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLT------------------------------KAELA 483 (567)
Q Consensus 434 VIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~------------------------------~~~l~ 483 (567)
++.+||+|++||.++-.|+|.+++|++|..++|..++..++.++. ...+.
T Consensus 488 LvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~ 567 (630)
T KOG0742|consen 488 LVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCS 567 (630)
T ss_pred EEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHH
Confidence 999999999999999999999999999999999999999887421 12467
Q ss_pred HHHHhccCCCHHHHHHHHHHH
Q 047219 484 ELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 484 ~la~~t~g~s~~dL~~L~~~a 504 (567)
+.+..|.||||++|..|+.-.
T Consensus 568 EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 568 EAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred HHHHhccCCcHHHHHHHHHHH
Confidence 889999999999999987643
No 58
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.79 E-value=3.7e-19 Score=180.94 Aligned_cols=258 Identities=19% Similarity=0.242 Sum_probs=192.2
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--C
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--P 350 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~ 350 (567)
..+...|+.|++.+..++.+.+..... +-...++||.|++||||.++|++-|..+.+. +
T Consensus 197 ~~~~~~F~~~v~~S~~mk~~v~qA~k~-------------------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~p 257 (511)
T COG3283 197 AQDVSGFEQIVAVSPKMKHVVEQAQKL-------------------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKP 257 (511)
T ss_pred cccccchHHHhhccHHHHHHHHHHHHh-------------------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCC
Confidence 345568999999999999998877654 5567789999999999999999999999876 6
Q ss_pred CCCcCeEEechhhHHhhhhchhH--HHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCccc
Q 047219 351 WQGVPLMYVPLEVVMSKYYGESE--RLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 351 ~~~~~~~~i~~~~l~s~~~G~~~--~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~ 428 (567)
|..++|..++.+.-.+++||+.. +-...+|+.|. ++++|||||..|++..|.+++++.++ ..|-+..+..+.
T Consensus 258 FlalNCA~lPe~~aEsElFG~apg~~gk~GffE~An----gGTVlLDeIgEmSp~lQaKLLRFL~D--GtFRRVGee~Ev 331 (511)
T COG3283 258 FLALNCASLPEDAAESELFGHAPGDEGKKGFFEQAN----GGTVLLDEIGEMSPRLQAKLLRFLND--GTFRRVGEDHEV 331 (511)
T ss_pred eeEeecCCCchhHhHHHHhcCCCCCCCccchhhhcc----CCeEEeehhhhcCHHHHHHHHHHhcC--CceeecCCcceE
Confidence 77777777777888889998754 22334666554 89999999999999999888888766 566677776677
Q ss_pred CCcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHH
Q 047219 429 DKKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVC 501 (567)
Q Consensus 429 ~~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~ 501 (567)
..+|+||+||.. .+.+.++|++|+ +++.+.+|++++|.+++..+++.|-.+..+++......++..-+..|.
T Consensus 332 ~vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~ 410 (511)
T COG3283 332 HVDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLT 410 (511)
T ss_pred EEEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Confidence 789999999975 568999999999 999999999999999999999887766666666666666666666666
Q ss_pred HHHH-------HHHHHHHH---hc-ccc-----c---cC-----cccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Q 047219 502 QQAE-------RSWASKII---RG-QIT-----K---DG-----EQACLPPLQEYIESATNRRRSLLDAAEQSHQNINNH 557 (567)
Q Consensus 502 ~~a~-------~~a~~r~i---~~-~i~-----~---~~-----~~~~~~~l~e~le~~e~~~~~li~~al~~~~~~~s~ 557 (567)
++.| .++.-|.. .+ .+. . +. ......++++.+..+| ++++++.-..|-...+.
T Consensus 411 ~y~WpGNVRqL~N~iyRA~s~~Eg~~l~i~~i~Lp~~~~~~~~~~~~~~gsLdei~~~fE---~~VL~rly~~yPStRkL 487 (511)
T COG3283 411 RYAWPGNVRQLKNAIYRALTLLEGYELRIEDILLPDYDAATVVGEDALEGSLDEIVSRFE---RSVLTRLYRSYPSTRKL 487 (511)
T ss_pred HcCCCccHHHHHHHHHHHHHHhccCccchhhcccCCcccccccchhhccCCHHHHHHHHH---HHHHHHHHHhCCcHHHH
Confidence 6666 12222211 11 111 0 00 0111236778888887 88887776666555444
Q ss_pred hh
Q 047219 558 RT 559 (567)
Q Consensus 558 ~~ 559 (567)
++
T Consensus 488 Ak 489 (511)
T COG3283 488 AK 489 (511)
T ss_pred HH
Confidence 43
No 59
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.78 E-value=9.2e-19 Score=190.59 Aligned_cols=264 Identities=19% Similarity=0.213 Sum_probs=168.5
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--CCCCcC
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--PWQGVP 355 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~~~~~~ 355 (567)
.+.+++|.+..++.+.+.+... .....+++|+|++||||+++|+++|..+.+. +|+.++
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~-------------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~ 197 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI-------------------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAIN 197 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH-------------------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEE
Confidence 4567999999999888877543 4556789999999999999999999988643 333333
Q ss_pred eEEechhhHHhhhhchhHHHHHHHHH---HHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 356 LMYVPLEVVMSKYYGESERLLGKVFS---LANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 356 ~~~i~~~~l~s~~~G~~~~~l~~~f~---~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
|..++.+.+.+.+||.....+..... ..-..+.+++||||||+.|+...|..+.++++.. .+.........+.++
T Consensus 198 c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~--~~~~~~~~~~~~~~~ 275 (445)
T TIGR02915 198 CAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQER--VIERLGGREEIPVDV 275 (445)
T ss_pred CCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhC--eEEeCCCCceeeece
Confidence 33333344455556643221100000 0012345799999999999877666554444320 111111111223578
Q ss_pred EEEEeeCCC-------CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 433 VVIAATNRK-------QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 433 iVIaaTN~~-------~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
++|++|+.. +.++++|++|+ ..+.+.+|++++|.+++..+++++.......+.....++++..++.|..+.|
T Consensus 276 rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~w 354 (445)
T TIGR02915 276 RIVCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAW 354 (445)
T ss_pred EEEEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCC
Confidence 999999873 67999999999 7899999999999999998887765544443333344566666666666666
Q ss_pred -------HHHHHHHHh---c-ccccc-----Ccc-cCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCC
Q 047219 506 -------RSWASKIIR---G-QITKD-----GEQ-ACL---PPLQEYIESATNRRRSLLDAAEQSHQNINNHRTKKQPLD 565 (567)
Q Consensus 506 -------~~a~~r~i~---~-~i~~~-----~~~-~~~---~~l~e~le~~e~~~~~li~~al~~~~~~~s~~~~~~~l~ 565 (567)
++.+++.+. + .++.. ... ... .++.+.++.+| +.+|.+++.+++++++++++.+++|
T Consensus 355 pgNvreL~~~i~~a~~~~~~~~i~~~~l~~~~~~~~~~~~~~~l~~~~~~~E---~~~i~~al~~~~gn~~~aA~~Lgis 431 (445)
T TIGR02915 355 PGNVRELENKVKRAVIMAEGNQITAEDLGLDARERAETPLEVNLREVRERAE---REAVRKAIARVDGNIARAAELLGIT 431 (445)
T ss_pred CChHHHHHHHHHHHHHhCCCCcccHHHcCCccccccccccccCHHHHHHHHH---HHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 233333321 1 11100 000 000 13444455555 8999999999999999999999998
Q ss_pred C
Q 047219 566 L 566 (567)
Q Consensus 566 ~ 566 (567)
+
T Consensus 432 r 432 (445)
T TIGR02915 432 R 432 (445)
T ss_pred H
Confidence 6
No 60
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.77 E-value=7.6e-19 Score=192.56 Aligned_cols=261 Identities=18% Similarity=0.219 Sum_probs=167.7
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeE
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLM 357 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~ 357 (567)
.+.+++|.+..++.+.+.+... .....++||+|++|||||++|+++|..+.+. ..+|+
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~-------------------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~i 193 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL-------------------SRSSISVLINGESGTGKELVAHALHRHSPRA---KAPFI 193 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH-------------------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCC---CCCeE
Confidence 4568999999999988877643 4567789999999999999999999988654 34555
Q ss_pred Eechh-----hHHhhhhchhHHHHHHHH---HHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccC
Q 047219 358 YVPLE-----VVMSKYYGESERLLGKVF---SLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 358 ~i~~~-----~l~s~~~G~~~~~l~~~f---~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
.++|. .+.+.+||+......... ......+.+++||||||+.|+...|..+..+++. ..+....+.....
T Consensus 194 ~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~--~~~~~~~~~~~~~ 271 (469)
T PRK10923 194 ALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLAD--GQFYRVGGYAPVK 271 (469)
T ss_pred eeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhc--CcEEeCCCCCeEE
Confidence 55554 445555664322110000 0001233479999999999987766554443322 1111111111223
Q ss_pred CcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHH
Q 047219 430 KKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 430 ~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~ 502 (567)
.++++|+||+. .+.+.++|++|| ..+.+.+|++++|.+++..+++++.......+.....++++..+..|++
T Consensus 272 ~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 350 (469)
T PRK10923 272 VDVRIIAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 (469)
T ss_pred eeEEEEEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 57899999976 347899999999 7899999999999999998888765554444433344566666666666
Q ss_pred HHH-------HHHHHHHHh---c-cccccC-----ccc-----------C------------------CCcHHHHHHHHH
Q 047219 503 QAE-------RSWASKIIR---G-QITKDG-----EQA-----------C------------------LPPLQEYIESAT 537 (567)
Q Consensus 503 ~a~-------~~a~~r~i~---~-~i~~~~-----~~~-----------~------------------~~~l~e~le~~e 537 (567)
+.| ++.+++.+. + .+..+. ... . ...+.+.++.+|
T Consensus 351 ~~wpgNv~eL~~~i~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~E 430 (469)
T PRK10923 351 LAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVPESTSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELE 430 (469)
T ss_pred CCCCChHHHHHHHHHHHHHhCCCCcccHHHCcHhhhccccccccccccccccccccccccccccccccchhhHHHHHHHH
Confidence 666 233333221 0 010000 000 0 001223444444
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhccCCCCC
Q 047219 538 NRRRSLLDAAEQSHQNINNHRTKKQPLDL 566 (567)
Q Consensus 538 ~~~~~li~~al~~~~~~~s~~~~~~~l~~ 566 (567)
+.+|..++.+++++++++++.+++++
T Consensus 431 ---~~~i~~aL~~~~gn~~~aA~~Lgisr 456 (469)
T PRK10923 431 ---RTLLTTALRHTQGHKQEAARLLGWGR 456 (469)
T ss_pred ---HHHHHHHHHHhCCCHHHHHHHhCCCH
Confidence 99999999999999999999999885
No 61
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.76 E-value=1.2e-17 Score=170.27 Aligned_cols=212 Identities=23% Similarity=0.319 Sum_probs=143.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcC----CCCcEEEE
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANEL----PNGAIIFL 394 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~----a~~~ILfI 394 (567)
.+.-.+++||||||||||+|||.|++..... .+.|+.+++..-. -..++.+|+.++.. ....||||
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~---SyrfvelSAt~a~-------t~dvR~ife~aq~~~~l~krkTilFi 228 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKH---SYRFVELSATNAK-------TNDVRDIFEQAQNEKSLTKRKTILFI 228 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCC---ceEEEEEeccccc-------hHHHHHHHHHHHHHHhhhcceeEEEe
Confidence 4556789999999999999999999988554 3457776654322 24567777776532 34589999
Q ss_pred cCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEee--CCCCCCChHHHhccceEEEecCCCHHHHHHHHHH
Q 047219 395 DEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAAT--NRKQDLDPALISRFDSMITFGLPDHENRQEIAAQ 472 (567)
Q Consensus 395 DEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaT--N~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~ 472 (567)
|||+.+...+|+. ||... ..+.+++|++| |+...++.+|++|| .++.++..+.++...||..
T Consensus 229 DEiHRFNksQQD~-----------fLP~V----E~G~I~lIGATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 229 DEIHRFNKSQQDT-----------FLPHV----ENGDITLIGATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred HHhhhhhhhhhhc-----------cccee----ccCceEEEecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHH
Confidence 9999997665543 33333 35789999988 77889999999999 9999999999999998887
Q ss_pred HHHh-----------------hCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhccccccCcccCCCcHHHHHHH
Q 047219 473 YAKH-----------------LTKAELAELATATEEMSGRDIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQEYIES 535 (567)
Q Consensus 473 ~~~~-----------------~~~~~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r~i~~~i~~~~~~~~~~~l~e~le~ 535 (567)
-... +....++.++..+.| |-+..++...+.+..-..+..-. ...+..+ +.+.+
T Consensus 293 aia~l~dser~~~~l~n~s~~ve~siidyla~lsdG----DaR~aLN~Lems~~m~~tr~g~~----~~~~lSi-dDvke 363 (554)
T KOG2028|consen 293 AIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG----DARAALNALEMSLSMFCTRSGQS----SRVLLSI-DDVKE 363 (554)
T ss_pred HHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHhhcCCc----ccceecH-HHHHH
Confidence 4431 122345666666665 44444444443322211111100 1112233 33444
Q ss_pred HHHHHHHHHHHHHHHHhhH-----HhhhhccCCCC
Q 047219 536 ATNRRRSLLDAAEQSHQNI-----NNHRTKKQPLD 565 (567)
Q Consensus 536 ~e~~~~~li~~al~~~~~~-----~s~~~~~~~l~ 565 (567)
..++...+|+++++.||+. +|+|..+.+-+
T Consensus 364 ~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAs 398 (554)
T KOG2028|consen 364 GLQRSHILYDRAGEEHYNTISALHKSMRGSDQNAS 398 (554)
T ss_pred HHhhccceecccchhHHHHHHHHHHhhcCCccchH
Confidence 4556678999999999996 77887777654
No 62
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=3e-17 Score=163.35 Aligned_cols=194 Identities=24% Similarity=0.309 Sum_probs=143.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
.+..|++.+|++..|+++.-++...-.+ .....|+||+||||.||||||+.||+++ ++
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r----------------~e~lDHvLl~GPPGlGKTTLA~IIA~Em------gv 78 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKR----------------GEALDHVLLFGPPGLGKTTLAHIIANEL------GV 78 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhc----------------CCCcCeEEeeCCCCCcHHHHHHHHHHHh------cC
Confidence 4568999999999999998877654222 4667899999999999999999999999 88
Q ss_pred CeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc-------
Q 047219 355 PLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE------- 427 (567)
Q Consensus 355 ~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~------- 427 (567)
++...+++.+... ..+-.++.. ..++.||||||||.|.+...+.+..+++... +..+-+..
T Consensus 79 n~k~tsGp~leK~------gDlaaiLt~---Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~---lDI~IG~gp~Arsv~ 146 (332)
T COG2255 79 NLKITSGPALEKP------GDLAAILTN---LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFR---LDIIIGKGPAARSIR 146 (332)
T ss_pred CeEecccccccCh------hhHHHHHhc---CCcCCeEEEehhhhcChhHHHHhhhhhhhee---EEEEEccCCccceEe
Confidence 8888887766431 223334443 3357899999999998765444444433211 01111100
Q ss_pred -cCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh----CHHHHHHHHHhccCCCHHHHHHHHH
Q 047219 428 -QDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL----TKAELAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 428 -~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~----~~~~l~~la~~t~g~s~~dL~~L~~ 502 (567)
.-..+.+|+||.+.+.+...|+.||....+++.++.++..+|+......+ ..+....++..+.| +++--..|++
T Consensus 147 ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 147 LDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred ccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHH
Confidence 12579999999999999999999999999999999999999999887754 46678888888776 4554444444
Q ss_pred H
Q 047219 503 Q 503 (567)
Q Consensus 503 ~ 503 (567)
.
T Consensus 226 R 226 (332)
T COG2255 226 R 226 (332)
T ss_pred H
Confidence 4
No 63
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.75 E-value=3.1e-18 Score=180.85 Aligned_cols=205 Identities=21% Similarity=0.300 Sum_probs=147.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
......+++++|.+...+++++.+... .....+||+.|++||||+++|+.||..+.+. .
T Consensus 71 ~~~~~~~~~LIG~~~~~~~~~eqik~~-------------------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~--~ 129 (403)
T COG1221 71 YLKSEALDDLIGESPSLQELREQIKAY-------------------APSGLPVLIIGETGTGKELFARLIHALSARR--A 129 (403)
T ss_pred hccchhhhhhhccCHHHHHHHHHHHhh-------------------CCCCCcEEEecCCCccHHHHHHHHHHhhhcc--c
Confidence 345567899999999999999999763 6778899999999999999999999776552 2
Q ss_pred CcCeEEechh-----hHHhhhhchhHHHHH-------HHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHH
Q 047219 353 GVPLMYVPLE-----VVMSKYYGESERLLG-------KVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLL 420 (567)
Q Consensus 353 ~~~~~~i~~~-----~l~s~~~G~~~~~l~-------~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL 420 (567)
..||+.+||. ...+++||+.+..+. .+| +.+.+|+||||||+.|++..|..+..++++ ..+.
T Consensus 130 ~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glf----e~A~GGtLfLDEI~~LP~~~Q~kLl~~le~--g~~~ 203 (403)
T COG1221 130 EAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLF----EQANGGTLFLDEIHRLPPEGQEKLLRVLEE--GEYR 203 (403)
T ss_pred CCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchh----eecCCCEEehhhhhhCCHhHHHHHHHHHHc--CceE
Confidence 4455555554 455567776444322 233 334589999999999998877777666655 3343
Q ss_pred HhhcCcccCCcEEEEEeeCC--CCCCCh--HHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHH---------------
Q 047219 421 RQIDGFEQDKKVVVIAATNR--KQDLDP--ALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAE--------------- 481 (567)
Q Consensus 421 ~~ld~~~~~~~viVIaaTN~--~~~Ld~--aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~--------------- 481 (567)
+..+....+.+|++|+|||. .+.+.. +|++|+ ..+.+.+|++++|.+++..++++|....
T Consensus 204 rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a 282 (403)
T COG1221 204 RVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEA 282 (403)
T ss_pred ecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHH
Confidence 34443345679999999974 344555 888877 6788899999999999999888765443
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHH
Q 047219 482 LAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 482 l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
...+..+.+.-+.++|++++.++.
T Consensus 283 ~~~L~~y~~pGNirELkN~Ve~~~ 306 (403)
T COG1221 283 LRALLAYDWPGNIRELKNLVERAV 306 (403)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHH
Confidence 444444544455556666555554
No 64
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.75 E-value=7.4e-17 Score=167.03 Aligned_cols=196 Identities=21% Similarity=0.261 Sum_probs=136.0
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeE
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLM 357 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~ 357 (567)
+|++++|++++++.|...+...... ...+.+++|+||||||||++|+++++++ +..+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~----------------~~~~~~~ll~Gp~G~GKT~la~~ia~~~------~~~~~ 59 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR----------------QEALDHLLLYGPPGLGKTTLAHIIANEM------GVNLK 59 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc----------------CCCCCeEEEECCCCCCHHHHHHHHHHHh------CCCEE
Confidence 6899999999999998887543111 2456789999999999999999999998 44455
Q ss_pred EechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcC-c------ccCC
Q 047219 358 YVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG-F------EQDK 430 (567)
Q Consensus 358 ~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~-~------~~~~ 430 (567)
.+.++.... ...+...+.. ...+.+|||||||.+....+..+...+.+....+ .++. . ....
T Consensus 60 ~~~~~~~~~------~~~l~~~l~~---~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~--v~~~~~~~~~~~~~~~ 128 (305)
T TIGR00635 60 ITSGPALEK------PGDLAAILTN---LEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDI--VIGKGPSARSVRLDLP 128 (305)
T ss_pred EeccchhcC------chhHHHHHHh---cccCCEEEEehHhhhCHHHHHHhhHHHhhhheee--eeccCccccceeecCC
Confidence 544332211 0112222222 2236899999999998665443333222211100 0010 0 0123
Q ss_pred cEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 431 KVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 431 ~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
.+.+|++||++..++++|++||...+.++.|+.++..++++..+.. +..+.++.+++.+.|. ++.+..++..+|.
T Consensus 129 ~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~ 207 (305)
T TIGR00635 129 PFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRD 207 (305)
T ss_pred CeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHH
Confidence 4889999999999999999999888999999999999999988764 5677888999988875 4666777777764
Q ss_pred H
Q 047219 507 S 507 (567)
Q Consensus 507 ~ 507 (567)
.
T Consensus 208 ~ 208 (305)
T TIGR00635 208 F 208 (305)
T ss_pred H
Confidence 3
No 65
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.6e-17 Score=174.85 Aligned_cols=203 Identities=25% Similarity=0.355 Sum_probs=155.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
.+-+|+.++-..+.|+.|.+-+..+++..+.|++.|.+| -++.|||||||||||+++.|+|+++ +.
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkaw--------KRGYLLYGPPGTGKSS~IaAmAn~L------~y 261 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAW--------KRGYLLYGPPGTGKSSFIAAMANYL------NY 261 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcch--------hccceeeCCCCCCHHHHHHHHHhhc------CC
Confidence 348999999999999999999999999999999998655 4899999999999999999999999 66
Q ss_pred CeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhh---hh--hHH--HHHHHHHHHHHhhcCcc
Q 047219 355 PLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARD---SE--MHE--ATRRILSVLLRQIDGFE 427 (567)
Q Consensus 355 ~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q---~~--l~~--~~~~vl~~LL~~ld~~~ 427 (567)
.++.++..+.... ..++.++.... +.+||+|.+||+-...+. .. ..+ ...-++..||..+|++-
T Consensus 262 dIydLeLt~v~~n------~dLr~LL~~t~---~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlw 332 (457)
T KOG0743|consen 262 DIYDLELTEVKLD------SDLRHLLLATP---NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLW 332 (457)
T ss_pred ceEEeeeccccCc------HHHHHHHHhCC---CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccc
Confidence 6776665543321 12566655443 468999999998643221 10 000 11235678999999986
Q ss_pred cCC--cEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhh-CHHHHHHHHHhccC--CCHHHHHHH
Q 047219 428 QDK--KVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHL-TKAELAELATATEE--MSGRDIRDV 500 (567)
Q Consensus 428 ~~~--~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~-~~~~l~~la~~t~g--~s~~dL~~L 500 (567)
... .-++|+|||..+.|||||+| |+|..|++...+...-+.++..++..- +...+.++.+...+ .+++|+...
T Consensus 333 Sscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~ 412 (457)
T KOG0743|consen 333 SSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEE 412 (457)
T ss_pred ccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHH
Confidence 655 78999999999999999999 999999999999999999998887642 23444444444443 588887544
No 66
>PRK15115 response regulator GlrR; Provisional
Probab=99.74 E-value=6.1e-18 Score=184.10 Aligned_cols=258 Identities=16% Similarity=0.208 Sum_probs=162.0
Q ss_pred cccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 281 NIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 281 dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
.++|.+..++.+.+.+... .....+++|+|++|||||++|+++|+...+. +.+|+.++
T Consensus 135 ~lig~s~~~~~~~~~~~~~-------------------a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~---~~~f~~i~ 192 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMV-------------------AQSDVSVLINGQSGTGKEILAQAIHNASPRA---SKPFIAIN 192 (444)
T ss_pred cccccCHHHHHHHHHHHhh-------------------ccCCCeEEEEcCCcchHHHHHHHHHHhcCCC---CCCeEEEe
Confidence 5788888877777666543 3456789999999999999999999998654 44566666
Q ss_pred hh-----hHHhhhhchhHHHHHHHH---HHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 361 LE-----VVMSKYYGESERLLGKVF---SLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 361 ~~-----~l~s~~~G~~~~~l~~~f---~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
|. .+.+.+||.......... ......+.+++|||||||.|+...|..+..+++. ..+...........++
T Consensus 193 c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~--~~~~~~g~~~~~~~~~ 270 (444)
T PRK15115 193 CGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQE--RKVRPLGSNRDIDIDV 270 (444)
T ss_pred CCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhh--CCEEeCCCCceeeeeE
Confidence 54 344445554321110000 0001233469999999999998766655544332 1111111111223478
Q ss_pred EEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 433 VVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 433 iVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
++|++|+. .+.|+++|++|+ ..+.+.+|++++|.+++..+++++.............++++..+..|..+.|
T Consensus 271 rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~W 349 (444)
T PRK15115 271 RIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASW 349 (444)
T ss_pred EEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCC
Confidence 99999986 347889999999 7899999999999999988777654443333333334556666666666665
Q ss_pred -------HHHHHHHHh---c-cccccCc-------ccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCC
Q 047219 506 -------RSWASKIIR---G-QITKDGE-------QACLPPLQEYIESATNRRRSLLDAAEQSHQNINNHRTKKQPLDL 566 (567)
Q Consensus 506 -------~~a~~r~i~---~-~i~~~~~-------~~~~~~l~e~le~~e~~~~~li~~al~~~~~~~s~~~~~~~l~~ 566 (567)
++.+++.+. + .++.... ....+.+...++.+| +.+|.+++..++++++++++.+++|+
T Consensus 350 pgNvreL~~~i~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~E---~~~i~~al~~~~gn~~~aA~~Lgisr 425 (444)
T PRK15115 350 PGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFVEARNQFE---LNYLRKLLQITKGNVTHAARMAGRNR 425 (444)
T ss_pred CChHHHHHHHHHHHHHhCCCCccChhhhhhhhcccccccccHHHHHHHHH---HHHHHHHHHHhCCCHHHHHHHhCCCH
Confidence 233333221 1 1111100 001123333444444 99999999999999999999999985
No 67
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.74 E-value=5.7e-18 Score=184.80 Aligned_cols=261 Identities=17% Similarity=0.176 Sum_probs=162.0
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeE
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLM 357 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~ 357 (567)
.+..++|.+..+..+.+.+... .....++|++|++||||+++|+++|..+.+. +.+|+
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~-------------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~---~~~~~ 198 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKI-------------------ALSQASVLISGESGTGKELIARAIHYNSRRA---KGPFI 198 (457)
T ss_pred cccceecccHHHhHHHHHHHHH-------------------cCCCcEEEEEcCCCccHHHHHHHHHHhCCCC---CCCeE
Confidence 4567899999888888776654 4566789999999999999999999987643 34455
Q ss_pred Eechh-----hHHhhhhchhHHHHHHH---HHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccC
Q 047219 358 YVPLE-----VVMSKYYGESERLLGKV---FSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 358 ~i~~~-----~l~s~~~G~~~~~l~~~---f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
.++|. .+.+.+||......... .......+.+++|||||||.|....|..+..+++.. .+.........+
T Consensus 199 ~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~--~~~~~~~~~~~~ 276 (457)
T PRK11361 199 KVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQER--EFERIGGHQTIK 276 (457)
T ss_pred EEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcC--cEEeCCCCceee
Confidence 55554 44555666432111000 000112344799999999999877655444333220 000011111223
Q ss_pred CcEEEEEeeCCC-------CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHH
Q 047219 430 KKVVVIAATNRK-------QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 430 ~~viVIaaTN~~-------~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~ 502 (567)
.++++|++||.. +.++++|++|+ ..+.+..|++++|.+++..++.++.............+++...+..|..
T Consensus 277 ~~~rii~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 355 (457)
T PRK11361 277 VDIRIIAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTA 355 (457)
T ss_pred eceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHc
Confidence 578999999863 57899999999 7799999999999999988776554433322222233455555555555
Q ss_pred HHH-------HHHHHHHHh---c-ccccc-----C----c----c-c---CCCcHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 047219 503 QAE-------RSWASKIIR---G-QITKD-----G----E----Q-A---CLPPLQEYIESATNRRRSLLDAAEQSHQNI 554 (567)
Q Consensus 503 ~a~-------~~a~~r~i~---~-~i~~~-----~----~----~-~---~~~~l~e~le~~e~~~~~li~~al~~~~~~ 554 (567)
+.| .+.+++.+. + .++.. . . . . ...++.+.++.+| +.+|..++.+++++
T Consensus 356 ~~wpgNv~eL~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~E---~~~i~~al~~~~gn 432 (457)
T PRK11361 356 WSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVE---KRIIMEVLEQQEGN 432 (457)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCcccHHHChHhhhcccccccccccccccccchhhHHHHHH---HHHHHHHHHHhCCC
Confidence 444 222222211 0 01000 0 0 0 0 0013444555555 99999999999999
Q ss_pred HhhhhccCCCCC
Q 047219 555 NNHRTKKQPLDL 566 (567)
Q Consensus 555 ~s~~~~~~~l~~ 566 (567)
++++++.+++|+
T Consensus 433 ~~~aA~~LGisr 444 (457)
T PRK11361 433 RTRTALMLGISR 444 (457)
T ss_pred HHHHHHHHCCCH
Confidence 999999999885
No 68
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.73 E-value=2.1e-16 Score=165.77 Aligned_cols=198 Identities=21% Similarity=0.256 Sum_probs=137.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcC
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVP 355 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~ 355 (567)
+.+|++++|+++.++.+...+...... ..++.++||+||||||||++|+++|+++ +..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~----------------~~~~~~~ll~GppG~GKT~la~~ia~~l------~~~ 78 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKR----------------GEALDHVLLYGPPGLGKTTLANIIANEM------GVN 78 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhc----------------CCCCCcEEEECCCCccHHHHHHHHHHHh------CCC
Confidence 458999999999999998877532111 3557799999999999999999999999 445
Q ss_pred eEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc-------c
Q 047219 356 LMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE-------Q 428 (567)
Q Consensus 356 ~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~-------~ 428 (567)
+..++++.+.. ...+..++... ..+++|||||||.+....++.+...+++.. +.-.++.-. .
T Consensus 79 ~~~~~~~~~~~------~~~l~~~l~~l---~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~--~~~~l~~~~~~~~~~~~ 147 (328)
T PRK00080 79 IRITSGPALEK------PGDLAAILTNL---EEGDVLFIDEIHRLSPVVEEILYPAMEDFR--LDIMIGKGPAARSIRLD 147 (328)
T ss_pred eEEEecccccC------hHHHHHHHHhc---ccCCEEEEecHhhcchHHHHHHHHHHHhcc--eeeeeccCccccceeec
Confidence 65555443221 12233333332 346899999999997554332211111100 000001000 1
Q ss_pred CCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
..++.+|++||+...++++|++||...+.|+.|+.+++.++++..+.. +..+.+..++..+.| +++.+..+++.+
T Consensus 148 l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~ 226 (328)
T PRK00080 148 LPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRV 226 (328)
T ss_pred CCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHH
Confidence 134789999999999999999999889999999999999999988764 566788899988877 457777777776
Q ss_pred HHH
Q 047219 505 ERS 507 (567)
Q Consensus 505 ~~~ 507 (567)
+..
T Consensus 227 ~~~ 229 (328)
T PRK00080 227 RDF 229 (328)
T ss_pred HHH
Confidence 643
No 69
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.72 E-value=2.1e-16 Score=183.01 Aligned_cols=204 Identities=25% Similarity=0.314 Sum_probs=145.1
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
++++|++++++.+.+.+......+ ...+.+++|+||||||||++|++||+.+ +.+++.+
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~---------------~~~~~~lll~GppG~GKT~lAk~iA~~l------~~~~~~i 378 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG---------------KMKGPILCLVGPPGVGKTSLGKSIAKAL------NRKFVRF 378 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc---------------CCCCceEEEECCCCCCHHHHHHHHHHHh------cCCeEEE
Confidence 458899999999988765331111 2234479999999999999999999999 5567766
Q ss_pred chhhH------H---hhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcC-----
Q 047219 360 PLEVV------M---SKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG----- 425 (567)
Q Consensus 360 ~~~~l------~---s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~----- 425 (567)
++..+ . ..|.|.....+...|..+.... .||||||||.+....+... .+.|+..+|.
T Consensus 379 ~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~--~villDEidk~~~~~~~~~-------~~aLl~~ld~~~~~~ 449 (775)
T TIGR00763 379 SLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKN--PLFLLDEIDKIGSSFRGDP-------ASALLEVLDPEQNNA 449 (775)
T ss_pred eCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCC--CEEEEechhhcCCccCCCH-------HHHHHHhcCHHhcCc
Confidence 54322 1 2455666666667777765443 5999999999986544322 1233333331
Q ss_pred c--------ccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHH--------------hhCHHHHH
Q 047219 426 F--------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAK--------------HLTKAELA 483 (567)
Q Consensus 426 ~--------~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~--------------~~~~~~l~ 483 (567)
+ ....++++|+|||..+.++++|++|| .+|+|+.|+.+++.+|++.++. .+.++.+.
T Consensus 450 f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~ 528 (775)
T TIGR00763 450 FSDHYLDVPFDLSKVIFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALL 528 (775)
T ss_pred cccccCCceeccCCEEEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHH
Confidence 1 11257899999999999999999999 6899999999999999987652 13445566
Q ss_pred HHHH-hccCCCHHHHHHHHHHHHHHHHHHHHh
Q 047219 484 ELAT-ATEEMSGRDIRDVCQQAERSWASKIIR 514 (567)
Q Consensus 484 ~la~-~t~g~s~~dL~~L~~~a~~~a~~r~i~ 514 (567)
.+++ ++..+..++|+..+....+.++.+++.
T Consensus 529 ~i~~~~~~e~g~R~l~r~i~~~~~~~~~~~~~ 560 (775)
T TIGR00763 529 LLIKYYTREAGVRNLERQIEKICRKAAVKLVE 560 (775)
T ss_pred HHHHhcChhcCChHHHHHHHHHHHHHHHHHHh
Confidence 5554 455567788888888888777776664
No 70
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.71 E-value=2e-17 Score=180.85 Aligned_cols=260 Identities=18% Similarity=0.226 Sum_probs=161.6
Q ss_pred cccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEE
Q 047219 279 WENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMY 358 (567)
Q Consensus 279 ~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~ 358 (567)
+..++|.+...+++.+.+... .....++++.|++||||+++|+++|....+. ..+|+.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~-------------------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~---~~~~~~ 190 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRL-------------------SRSDITVLINGESGTGKELVARALHRHSPRA---NGPFIA 190 (463)
T ss_pred ccceeecCHHHHHHHHHHHHH-------------------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCC---CCCeEE
Confidence 456899999998888777543 4556789999999999999999999988644 345555
Q ss_pred echh-----hHHhhhhchhHHHHHHHHH---HHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 359 VPLE-----VVMSKYYGESERLLGKVFS---LANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 359 i~~~-----~l~s~~~G~~~~~l~~~f~---~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
++|. .+.+.+||+....+..... .....+.+++||||||+.|....|..+.++++. ..+....+......
T Consensus 191 ~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~--~~~~~~~~~~~~~~ 268 (463)
T TIGR01818 191 LNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLAD--GEFYRVGGRTPIKV 268 (463)
T ss_pred EeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhc--CcEEECCCCceeee
Confidence 5554 4455556643211111000 001234479999999999987755444333221 00000111112234
Q ss_pred cEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHHH
Q 047219 431 KVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 431 ~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
++++|++|+. .+.++++|++|+ ..+.+.+|++++|.+++..+++++.......+.....+++...+..|..+
T Consensus 269 ~~rii~~~~~~l~~~~~~~~f~~~L~~rl-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 269 DVRIVAATHQNLEALVRQGKFREDLFHRL-NVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred eeEEEEeCCCCHHHHHHcCCcHHHHHHHh-CcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 7899999986 347889999999 77899999999999999988876554433333333345555555555555
Q ss_pred HH-------HHHHHHHHh---c-cccccCc-----c---------c---------------------CCCcHHHHHHHHH
Q 047219 504 AE-------RSWASKIIR---G-QITKDGE-----Q---------A---------------------CLPPLQEYIESAT 537 (567)
Q Consensus 504 a~-------~~a~~r~i~---~-~i~~~~~-----~---------~---------------------~~~~l~e~le~~e 537 (567)
.| ++.+++.+. + .++.... . . ....+.+.++.+|
T Consensus 348 ~wpgNvreL~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~E 427 (463)
T TIGR01818 348 RWPGNVRQLENLCRWLTVMASGDEVLVSDLPAELALTGRPASAPDSDGQDSWDEALEAWAKQALSRGEQGLLDRALPEFE 427 (463)
T ss_pred CCCChHHHHHHHHHHHHHhCCCCcccHHhchHHHhccccccccccccccccccccccccccccccccccchHHHHHHHHH
Confidence 55 222222221 0 0100000 0 0 0011222344444
Q ss_pred HHHHHHHHHHHHHHhhHHhhhhccCCCCC
Q 047219 538 NRRRSLLDAAEQSHQNINNHRTKKQPLDL 566 (567)
Q Consensus 538 ~~~~~li~~al~~~~~~~s~~~~~~~l~~ 566 (567)
+.+|..++..++++++++++.+++|+
T Consensus 428 ---~~~i~~al~~~~gn~~~aA~~Lgisr 453 (463)
T TIGR01818 428 ---RPLLEAALQHTRGHKQEAAALLGWGR 453 (463)
T ss_pred ---HHHHHHHHHHcCCCHHHHHHHhCCCH
Confidence 89999999999999999999999885
No 71
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=5.8e-16 Score=173.18 Aligned_cols=190 Identities=18% Similarity=0.203 Sum_probs=139.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~ 353 (567)
...+|++|+|++..++.|++.+.. .+.++.+||+||+|||||++|+++++.+++.. ...
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~--------------------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~ 70 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDG--------------------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTS 70 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCC
Confidence 457899999999999999887752 45577789999999999999999999996531 111
Q ss_pred cC-----------------eEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 354 VP-----------------LMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 354 ~~-----------------~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
.+ ++.++... ....+.++.+++.+.. .....|+||||+|.|...
T Consensus 71 ~PCG~C~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~---------- 134 (830)
T PRK07003 71 QPCGVCRACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH---------- 134 (830)
T ss_pred CCCcccHHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH----------
Confidence 12 22222211 0112334555554432 234579999999999632
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
..+.||+.|+. .+.+++||++||.+..|.+.|+||| ..+.|..++.++..+.|+..+.. +..+.+..+++..
T Consensus 135 -A~NALLKtLEE--PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A 210 (830)
T PRK07003 135 -AFNAMLKTLEE--PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA 210 (830)
T ss_pred -HHHHHHHHHHh--cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 44677887773 4668999999999999999999999 89999999999999999887764 5577888888887
Q ss_pred cCCCHHHHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQQAE 505 (567)
Q Consensus 490 ~g~s~~dL~~L~~~a~ 505 (567)
.| +.++..+++.+++
T Consensus 211 ~G-smRdALsLLdQAi 225 (830)
T PRK07003 211 QG-SMRDALSLTDQAI 225 (830)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 4556556655555
No 72
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=4.3e-16 Score=172.26 Aligned_cols=191 Identities=17% Similarity=0.191 Sum_probs=139.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC---
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP--- 350 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~--- 350 (567)
..+.+|++|+|++..++.|++.+.. .+.++.+||+||+|||||++|+.+++.+.+..
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~--------------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~ 69 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQ--------------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADG 69 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHh--------------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccc
Confidence 3457899999999999999988752 45677889999999999999999999996521
Q ss_pred ---CCCc-----------------CeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhh
Q 047219 351 ---WQGV-----------------PLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSE 407 (567)
Q Consensus 351 ---~~~~-----------------~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~ 407 (567)
...- .++.++... ...-+.++++.+.+.. .....|+||||+|.|..
T Consensus 70 ~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~----- 138 (700)
T PRK12323 70 EGGITAQPCGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN----- 138 (700)
T ss_pred cccCCCCCCcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----
Confidence 0001 222332221 0112344555544332 23457999999999963
Q ss_pred hHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHH
Q 047219 408 MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELA 483 (567)
Q Consensus 408 l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~ 483 (567)
...+.||+.++. .+.+++||++||.+..|.+.++||| ..+.|..++.++..+.++..+.. +..+.+.
T Consensus 139 ------~AaNALLKTLEE--PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~ 209 (700)
T PRK12323 139 ------HAFNAMLKTLEE--PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALR 209 (700)
T ss_pred ------HHHHHHHHhhcc--CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 345778888873 5678999999999999999999999 89999999999998888877654 3455677
Q ss_pred HHHHhccCCCHHHHHHHHHHHH
Q 047219 484 ELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 484 ~la~~t~g~s~~dL~~L~~~a~ 505 (567)
.++....| +.++..+++..++
T Consensus 210 ~IA~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 210 LLAQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred HHHHHcCC-CHHHHHHHHHHHH
Confidence 77777665 5667666666544
No 73
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.69 E-value=5.7e-16 Score=178.43 Aligned_cols=188 Identities=21% Similarity=0.287 Sum_probs=142.2
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCC
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQ 352 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~ 352 (567)
-.+++++|+++.+..+.+.+. .....+++|+||||||||++|+++|+.+... .+.
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~---------------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~ 237 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLC---------------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK 237 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHh---------------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 357889999999998876653 3446789999999999999999999987432 233
Q ss_pred CcCeEEechhhHH--hhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 353 GVPLMYVPLEVVM--SKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 353 ~~~~~~i~~~~l~--s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
+..++.+++..+. .++.|+.+..++.+|+.+.... ++||||||||.|.+........ ....+.|...+. ++
T Consensus 238 ~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~-~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~----~g 310 (731)
T TIGR02639 238 NAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEP-NAILFIDEIHTIVGAGATSGGS--MDASNLLKPALS----SG 310 (731)
T ss_pred CCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccC-CeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHh----CC
Confidence 6678899988887 4789999999999999987664 5899999999998654321111 112233444443 57
Q ss_pred cEEEEEeeCCC-----CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh--------hCHHHHHHHHHhccCCC
Q 047219 431 KVVVIAATNRK-----QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH--------LTKAELAELATATEEMS 493 (567)
Q Consensus 431 ~viVIaaTN~~-----~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~--------~~~~~l~~la~~t~g~s 493 (567)
.+.+|++||.. ...|++|.+|| ..++++.|+.+++.+|++.+... +.++.+..++..+..|-
T Consensus 311 ~i~~IgaTt~~e~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 311 KLRCIGSTTYEEYKNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred CeEEEEecCHHHHHHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 89999999863 35799999999 58999999999999999976653 35566666666665543
No 74
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.69 E-value=1.1e-17 Score=158.90 Aligned_cols=148 Identities=21% Similarity=0.317 Sum_probs=100.3
Q ss_pred ccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 282 IAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 282 IiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
|+|.+..++++++.+... +..+.+|||+|++||||+++|++||+.+.+. ..+|+.++|
T Consensus 1 liG~s~~m~~~~~~~~~~-------------------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~---~~pfi~vnc 58 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA-------------------ASSDLPVLITGETGTGKELLARAIHNNSPRK---NGPFISVNC 58 (168)
T ss_dssp SS--SHHHHHHHHHHHHH-------------------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTT---TS-EEEEET
T ss_pred CEeCCHHHHHHHHHHHHH-------------------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc---cCCeEEEeh
Confidence 689999999999999876 6677999999999999999999999988654 456666666
Q ss_pred h-----hHHhhhhchhHH-------HHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccC
Q 047219 362 E-----VVMSKYYGESER-------LLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 362 ~-----~l~s~~~G~~~~-------~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
. .+...+||.... ....+|+.|. +++||||||+.|++..|..+..+++. ..+....+....+
T Consensus 59 ~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~----~GtL~Ld~I~~L~~~~Q~~Ll~~l~~--~~~~~~g~~~~~~ 132 (168)
T PF00158_consen 59 AALPEELLESELFGHEKGAFTGARSDKKGLLEQAN----GGTLFLDEIEDLPPELQAKLLRVLEE--GKFTRLGSDKPVP 132 (168)
T ss_dssp TTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTT----TSEEEEETGGGS-HHHHHHHHHHHHH--SEEECCTSSSEEE
T ss_pred hhhhcchhhhhhhccccccccccccccCCceeecc----ceEEeecchhhhHHHHHHHHHHHHhh--chhcccccccccc
Confidence 4 455667775321 1124555544 79999999999998876665555433 1111112222345
Q ss_pred CcEEEEEeeCC-------CCCCChHHHhccceEEEe
Q 047219 430 KKVVVIAATNR-------KQDLDPALISRFDSMITF 458 (567)
Q Consensus 430 ~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i 458 (567)
.+++||++|+. .+.|.++|++|+ ..+.+
T Consensus 133 ~~~RiI~st~~~l~~~v~~g~fr~dLy~rL-~~~~i 167 (168)
T PF00158_consen 133 VDVRIIASTSKDLEELVEQGRFREDLYYRL-NVFTI 167 (168)
T ss_dssp --EEEEEEESS-HHHHHHTTSS-HHHHHHH-TTEEE
T ss_pred ccceEEeecCcCHHHHHHcCCChHHHHHHh-ceEec
Confidence 68999999986 468999999998 55544
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=1.7e-15 Score=163.74 Aligned_cols=190 Identities=17% Similarity=0.197 Sum_probs=135.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC-
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ- 352 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~- 352 (567)
..+.+|++++|++.+++.|+..+.. ...++.+||+||||||||++|+++|+.+.+....
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~--------------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~ 71 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKS--------------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG 71 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC
Confidence 3457899999999999999887752 3456679999999999999999999998653110
Q ss_pred Cc-----------------CeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHH
Q 047219 353 GV-----------------PLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEAT 412 (567)
Q Consensus 353 ~~-----------------~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~ 412 (567)
.. .++.+++.. ......++.+.+.+.. .....|+||||+|.|...
T Consensus 72 ~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~--------- 136 (484)
T PRK14956 72 NEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ--------- 136 (484)
T ss_pred ccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH---------
Confidence 11 122332211 0112334444444332 223579999999999633
Q ss_pred HHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHh
Q 047219 413 RRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATA 488 (567)
Q Consensus 413 ~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~ 488 (567)
.++.||+.++. .+.++++|++|+.+..+.+.+++|| ..+.|..++.++..+.++..+.. +..+.+..++..
T Consensus 137 --A~NALLKtLEE--Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~ 211 (484)
T PRK14956 137 --SFNALLKTLEE--PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKK 211 (484)
T ss_pred --HHHHHHHHhhc--CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45677887773 5678999999999999999999999 88999999998888888887764 456778888877
Q ss_pred ccCCCHHHHHHHHHHH
Q 047219 489 TEEMSGRDIRDVCQQA 504 (567)
Q Consensus 489 t~g~s~~dL~~L~~~a 504 (567)
..| +.++.-.++..+
T Consensus 212 S~G-d~RdAL~lLeq~ 226 (484)
T PRK14956 212 GDG-SVRDMLSFMEQA 226 (484)
T ss_pred cCC-hHHHHHHHHHHH
Confidence 766 344544444443
No 76
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.68 E-value=9e-17 Score=175.16 Aligned_cols=254 Identities=21% Similarity=0.246 Sum_probs=184.4
Q ss_pred cCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC-CCCCcCeEEech
Q 047219 283 AGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM-PWQGVPLMYVPL 361 (567)
Q Consensus 283 iG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~-~~~~~~~~~i~~ 361 (567)
++.+...+.+...++.. ....-++|+.|+|||||..+||+||+.+... +|+.+||..++.
T Consensus 316 ~~~d~s~a~l~rk~~rv-------------------~~~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~ 376 (606)
T COG3284 316 PLLDPSRATLLRKAERV-------------------AATDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPE 376 (606)
T ss_pred cccCHHHHHHHHHHHHH-------------------hhcCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchH
Confidence 46666666666655543 4566789999999999999999999999743 788888888988
Q ss_pred hhHHhhhhchhHHHHHHHHHHH----hcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEe
Q 047219 362 EVVMSKYYGESERLLGKVFSLA----NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAA 437 (567)
Q Consensus 362 ~~l~s~~~G~~~~~l~~~f~~A----~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaa 437 (567)
..+.+++||+........+.+- -+.+++++||+|||..|+-..|..+++++++ ..++...... .+.++.||+|
T Consensus 377 ~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e--~~v~p~g~~~-~~vdirvi~a 453 (606)
T COG3284 377 ALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQE--GVVTPLGGTR-IKVDIRVIAA 453 (606)
T ss_pred HhhhHHHhccCccccccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhh--CceeccCCcc-eeEEEEEEec
Confidence 9999999998766544333322 2456789999999999999988888887766 4444444444 6779999999
Q ss_pred eCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----------hCHHHHHHHHHhccCCCHHHHHHH
Q 047219 438 TNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----------LTKAELAELATATEEMSGRDIRDV 500 (567)
Q Consensus 438 TN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----------~~~~~l~~la~~t~g~s~~dL~~L 500 (567)
|++ .+.|.++||+|+ ..+.|.+|++++|.+.+..+.+. ++.+.+..+..+-|.-+.++|.++
T Consensus 454 th~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v 532 (606)
T COG3284 454 THRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNV 532 (606)
T ss_pred cCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHH
Confidence 987 568999999999 88999999999999877765442 345566777777777777777777
Q ss_pred HHHHHHHHHHHHHhccccccCcccCCCc-H-HHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCC
Q 047219 501 CQQAERSWASKIIRGQITKDGEQACLPP-L-QEYIESATNRRRSLLDAAEQSHQNINNHRTKKQPLDLC 567 (567)
Q Consensus 501 ~~~a~~~a~~r~i~~~i~~~~~~~~~~~-l-~e~le~~e~~~~~li~~al~~~~~~~s~~~~~~~l~~~ 567 (567)
+..+...+ -.|.+... .+++ + .+.....++.++..+-+++..++++.+.+++.+++|++
T Consensus 533 ~~~~~~l~----~~g~~~~~----dlp~~l~~~~~~~~~~~~~~~l~~al~~~~~~is~aa~~lgi~R~ 593 (606)
T COG3284 533 IERLAALS----DGGRIRVS----DLPPELLEEQATPREDIEKAALLAALQATNGNISEAARLLGISRS 593 (606)
T ss_pred HHHHHHcC----CCCeeEcc----cCCHHHHhhhcccccchHHHHHHHHHHHcCCCHHHHHHHhCCCHH
Confidence 76654221 11111111 1111 1 11111244555888999999999999999999999863
No 77
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.68 E-value=5.8e-16 Score=171.94 Aligned_cols=211 Identities=22% Similarity=0.331 Sum_probs=141.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC---C
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM---P 350 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~---~ 350 (567)
..+.+|++++|++..++.++..+. ...+.++||+||||||||++|+++|+++.+. +
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~---------------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~ 117 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC---------------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASP 117 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh---------------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCC
Confidence 344789999999999999886542 4556799999999999999999999876432 2
Q ss_pred CC-CcCeEEechhh-------HHhhhhchhHHHH---HHHH---------HHHhcCCCCcEEEEcCcchhhhhhhhhhHH
Q 047219 351 WQ-GVPLMYVPLEV-------VMSKYYGESERLL---GKVF---------SLANELPNGAIIFLDEVDSFAVARDSEMHE 410 (567)
Q Consensus 351 ~~-~~~~~~i~~~~-------l~s~~~G~~~~~l---~~~f---------~~A~~~a~~~ILfIDEID~L~~~~q~~l~~ 410 (567)
+. +.+|+.++|.. +...++|.....+ ...| ..+...+.+++|||||||.|....|..+..
T Consensus 118 ~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~ 197 (531)
T TIGR02902 118 FKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLK 197 (531)
T ss_pred cCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHH
Confidence 22 45778887753 1222222100000 0000 001123457999999999999887776666
Q ss_pred HHHHHHHHHH----Hhhc-----------CcccCCcEEEEEee-CCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHH
Q 047219 411 ATRRILSVLL----RQID-----------GFEQDKKVVVIAAT-NRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYA 474 (567)
Q Consensus 411 ~~~~vl~~LL----~~ld-----------~~~~~~~viVIaaT-N~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~ 474 (567)
.+++-...+. ...+ ....+.++++|++| |.++.+++++++|| ..+.|+.++.+++.++++..+
T Consensus 198 ~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a 276 (531)
T TIGR02902 198 VLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAA 276 (531)
T ss_pred HHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHH
Confidence 5543111110 0000 01124567777665 56899999999999 788999999999999999988
Q ss_pred Hh----hCHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 047219 475 KH----LTKAELAELATATEEMSGRDIRDVCQQAERSW 508 (567)
Q Consensus 475 ~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~~a 508 (567)
++ +.++.++.+..+++ +++++.++++.|...+
T Consensus 277 ~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 277 EKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIA 312 (531)
T ss_pred HHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHH
Confidence 75 45667777777665 6899999998887544
No 78
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.2e-15 Score=169.71 Aligned_cols=234 Identities=22% Similarity=0.274 Sum_probs=167.2
Q ss_pred CCHHHHHHHHHHHhhhcccccccCccccccCCCCCCcccccCcHHHHHHHHHHHHHh---ccChhhHHhhhhcccccccC
Q 047219 243 LTSEELDALVSVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLS---LQSPEVYDDIARGTRCKFES 319 (567)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~---l~~pelf~~l~~~~~~~~~~ 319 (567)
++.+++..+++.++..++.-...++..........--+.|+|+++++..+.+.|... |..| .
T Consensus 454 v~~~~Ia~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp---------------~ 518 (786)
T COG0542 454 VDEDDIAEVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDP---------------N 518 (786)
T ss_pred cCHHHHHHHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCC---------------C
Confidence 444667888888887766533333333333344455678999999999999999764 1121 3
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh------------hchhHHHHHHHHHHHhcCC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY------------YGESERLLGKVFSLANELP 387 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~------------~G~~~~~l~~~f~~A~~~a 387 (567)
+|..++||.||+|+|||.||+++|..+... ..+++.+++++++.++ +|+.+ +..++++.+..
T Consensus 519 rPigsFlF~GPTGVGKTELAkaLA~~Lfg~---e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee---GG~LTEaVRr~ 592 (786)
T COG0542 519 RPIGSFLFLGPTGVGKTELAKALAEALFGD---EQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE---GGQLTEAVRRK 592 (786)
T ss_pred CCceEEEeeCCCcccHHHHHHHHHHHhcCC---CccceeechHHHHHHHHHHHHhCCCCCCceecc---ccchhHhhhcC
Confidence 444578889999999999999999999654 4679999999988763 44433 34566666777
Q ss_pred CCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCccc---------CCcEEEEEeeCC------------------
Q 047219 388 NGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ---------DKKVVVIAATNR------------------ 440 (567)
Q Consensus 388 ~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~---------~~~viVIaaTN~------------------ 440 (567)
|++||+||||++-. .++++.||+.+|.-.- -.++++|+|||-
T Consensus 593 PySViLlDEIEKAH-----------pdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~ 661 (786)
T COG0542 593 PYSVILLDEIEKAH-----------PDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKE 661 (786)
T ss_pred CCeEEEechhhhcC-----------HHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhh
Confidence 89999999999854 4578888888876421 247999999985
Q ss_pred ----------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh-------------CHHHHHHHHHhcc--CCCHH
Q 047219 441 ----------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL-------------TKAELAELATATE--EMSGR 495 (567)
Q Consensus 441 ----------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~-------------~~~~l~~la~~t~--g~s~~ 495 (567)
...|.|+|++|+|.+|.|...+.+...+|+...+..+ .++..+.++.... .|-.+
T Consensus 662 ~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GAR 741 (786)
T COG0542 662 ALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGAR 741 (786)
T ss_pred hHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCch
Confidence 1137899999999999999999999999999877643 3334444544332 35566
Q ss_pred HHHHHHHHHHHHH
Q 047219 496 DIRDVCQQAERSW 508 (567)
Q Consensus 496 dL~~L~~~a~~~a 508 (567)
-|+.+++.-....
T Consensus 742 pL~R~Iq~~i~~~ 754 (786)
T COG0542 742 PLRRAIQQEIEDP 754 (786)
T ss_pred HHHHHHHHHHHHH
Confidence 6766666555433
No 79
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.67 E-value=1.3e-16 Score=173.32 Aligned_cols=261 Identities=16% Similarity=0.196 Sum_probs=166.1
Q ss_pred cccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 281 NIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 281 dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
.++|.+..++.+.+.+... .....+++++|++||||+++|+++|..+.+. ..+|+.++
T Consensus 140 ~lig~s~~~~~~~~~i~~~-------------------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~---~~~~i~~~ 197 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV-------------------APSEATVLIHGDSGTGKELVARAIHASSARS---EKPLVTLN 197 (441)
T ss_pred ceEecCHHHHHHHHHHhhc-------------------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCC---CCCeeeee
Confidence 4778888887777666433 4556889999999999999999999988654 34555555
Q ss_pred hh-----hHHhhhhchhHHHHHHHHH---HHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 361 LE-----VVMSKYYGESERLLGKVFS---LANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 361 ~~-----~l~s~~~G~~~~~l~~~f~---~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
|. .+.+.+||........... .....+.+|+||||||+.|+...|..+....+. ..+....+....+.++
T Consensus 198 c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~--~~~~~~~~~~~~~~~~ 275 (441)
T PRK10365 198 CAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQE--REVQRVGSNQTISVDV 275 (441)
T ss_pred CCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHcc--CcEEeCCCCceeeece
Confidence 54 4444555542221100000 001223479999999999987766544433322 0010111111123478
Q ss_pred EEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 433 VVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 433 iVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
++|++|+. ...++++|++|+ ..+.+..|++++|.+++..+++++......+......++++..+..|+.+.|
T Consensus 276 rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~w 354 (441)
T PRK10365 276 RLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDW 354 (441)
T ss_pred EEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCC
Confidence 89999876 346899999999 7899999999999999999888776555444444445688888888888888
Q ss_pred -------HHHHHHHHhc----cccccCcc-----cCCCc-HHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCC
Q 047219 506 -------RSWASKIIRG----QITKDGEQ-----ACLPP-LQEYIESATNRRRSLLDAAEQSHQNINNHRTKKQPLDL 566 (567)
Q Consensus 506 -------~~a~~r~i~~----~i~~~~~~-----~~~~~-l~e~le~~e~~~~~li~~al~~~~~~~s~~~~~~~l~~ 566 (567)
++.+++.+.. .++..... ..... -...+..+++.++.+|.+++.+++++++++++.+++|+
T Consensus 355 pgN~reL~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~l~~~~gn~~~aa~~Lgisr 432 (441)
T PRK10365 355 PGNIRELENAVERAVVLLTGEYISERELPLAIASTPIPLGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITR 432 (441)
T ss_pred CCHHHHHHHHHHHHHHhCCCCccchHhCchhhcccccCcccccchhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCH
Confidence 4455554321 11111000 00000 00001223344489999999999999999999999885
No 80
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.66 E-value=2.6e-15 Score=160.53 Aligned_cols=196 Identities=18% Similarity=0.254 Sum_probs=135.6
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcC--
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVP-- 355 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~-- 355 (567)
.|++|+|++.+++.|++++.....++..+ +...++++||+||||+|||++|+++|+.+.+..-.+.+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~-----------~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg 71 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA-----------GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCG 71 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc-----------CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCC
Confidence 58999999999999999997543322111 13467889999999999999999999988543100111
Q ss_pred ---------------eEEechhhHHhhhhchhHHHHHHHHHHHhcC---CCCcEEEEcCcchhhhhhhhhhHHHHHHHHH
Q 047219 356 ---------------LMYVPLEVVMSKYYGESERLLGKVFSLANEL---PNGAIIFLDEVDSFAVARDSEMHEATRRILS 417 (567)
Q Consensus 356 ---------------~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~---a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~ 417 (567)
+..+..+. .. ..-..++.+++.+... ++..|+||||+|.|... ..+
T Consensus 72 ~C~~C~~~~~~~hpD~~~i~~~~---~~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aan 135 (394)
T PRK07940 72 ECRACRTVLAGTHPDVRVVAPEG---LS--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AAN 135 (394)
T ss_pred CCHHHHHHhcCCCCCEEEecccc---cc--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHH
Confidence 11222111 11 1123466777666532 34579999999999643 336
Q ss_pred HHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHH
Q 047219 418 VLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDI 497 (567)
Q Consensus 418 ~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL 497 (567)
.|++.++. .+.++++|.+|+.++.+.+.++||| ..+.|+.|+.++..+.+.... .+..+....++..+.|..+..+
T Consensus 136 aLLk~LEe--p~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~-~~~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 136 ALLKAVEE--PPPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRD-GVDPETARRAARASQGHIGRAR 211 (394)
T ss_pred HHHHHhhc--CCCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHcCCCHHHHH
Confidence 67777774 4456666666666899999999999 899999999998887776332 3566677788888888777776
Q ss_pred HHHHHHH
Q 047219 498 RDVCQQA 504 (567)
Q Consensus 498 ~~L~~~a 504 (567)
..+....
T Consensus 212 ~l~~~~~ 218 (394)
T PRK07940 212 RLATDEE 218 (394)
T ss_pred HHhcChH
Confidence 6554433
No 81
>PLN03025 replication factor C subunit; Provisional
Probab=99.66 E-value=5.9e-15 Score=154.25 Aligned_cols=186 Identities=15% Similarity=0.222 Sum_probs=128.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
..+.+|++++|++++++.|+..+. .....++||+||||||||++|+++|+++....+ .
T Consensus 7 yrP~~l~~~~g~~~~~~~L~~~~~---------------------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-~ 64 (319)
T PLN03025 7 YRPTKLDDIVGNEDAVSRLQVIAR---------------------DGNMPNLILSGPPGTGKTTSILALAHELLGPNY-K 64 (319)
T ss_pred cCCCCHHHhcCcHHHHHHHHHHHh---------------------cCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-c
Confidence 345789999999999998887654 223346999999999999999999999854322 2
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHH-Hhc-----CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSL-ANE-----LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE 427 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~-A~~-----~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~ 427 (567)
..+..++.++..+. ..++..... +.. .....+++|||+|.|....| +.|+..++.
T Consensus 65 ~~~~eln~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq-----------~aL~~~lE~-- 125 (319)
T PLN03025 65 EAVLELNASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQ-----------QALRRTMEI-- 125 (319)
T ss_pred cceeeecccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHH-----------HHHHHHHhc--
Confidence 23555555432211 112222111 111 12357999999999975433 344455543
Q ss_pred cCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHH
Q 047219 428 QDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 428 ~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
.+..+++|.+||....+.++|++|| ..++|..|+.++....+...++. +..+.+..++....| |++.+++.
T Consensus 126 ~~~~t~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~ 200 (319)
T PLN03025 126 YSNTTRFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNN 200 (319)
T ss_pred ccCCceEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 2345678888998889999999999 78999999999999999888764 456777777776544 66666665
Q ss_pred HH
Q 047219 504 AE 505 (567)
Q Consensus 504 a~ 505 (567)
..
T Consensus 201 Lq 202 (319)
T PLN03025 201 LQ 202 (319)
T ss_pred HH
Confidence 54
No 82
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=3.5e-15 Score=169.74 Aligned_cols=196 Identities=18% Similarity=0.215 Sum_probs=137.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~ 353 (567)
.+.+|++|+|++.+++.|++++.. .+.++.+||+||||||||++|+++|+.+.+.. ..+
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~--------------------~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~ 70 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQ--------------------QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTA 70 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHh--------------------CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCC
Confidence 447899999999999999887752 35567789999999999999999999997531 111
Q ss_pred cCeEEec-hhhHHhhhh-------c---hhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHH
Q 047219 354 VPLMYVP-LEVVMSKYY-------G---ESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVL 419 (567)
Q Consensus 354 ~~~~~i~-~~~l~s~~~-------G---~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~L 419 (567)
.+|...+ |-.+....+ + ..-..++.+.+.+.. .++..|+||||+|.|... .++.|
T Consensus 71 ~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e-----------AqNAL 139 (944)
T PRK14949 71 TPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-----------SFNAL 139 (944)
T ss_pred CCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH-----------HHHHH
Confidence 2232211 111111100 0 112234444443332 234579999999999633 55778
Q ss_pred HHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHH
Q 047219 420 LRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGR 495 (567)
Q Consensus 420 L~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~ 495 (567)
|+.|+. .+.++++|++|+.+..|.+.|++|| ..++|..++.++..+.|...+.. +..+.+..++..+.| +.+
T Consensus 140 LKtLEE--PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R 215 (944)
T PRK14949 140 LKTLEE--PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMR 215 (944)
T ss_pred HHHHhc--cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 888873 5678889888988899999999999 89999999999999988887753 456678888888766 556
Q ss_pred HHHHHHHHHH
Q 047219 496 DIRDVCQQAE 505 (567)
Q Consensus 496 dL~~L~~~a~ 505 (567)
++..++..+.
T Consensus 216 ~ALnLLdQal 225 (944)
T PRK14949 216 DALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHH
Confidence 6666665433
No 83
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=3e-15 Score=163.58 Aligned_cols=177 Identities=20% Similarity=0.287 Sum_probs=126.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC-CC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-QG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-~~ 353 (567)
.+.+|++++|++.+++.|+..+.. ...+.++||+||||||||++|+++|+.+..... ..
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~--------------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~ 68 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKK--------------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGV 68 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC
Confidence 457899999999998888876642 355677999999999999999999999864311 01
Q ss_pred c-----------------CeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 354 V-----------------PLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 354 ~-----------------~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
. .++.+++.. ...-..++.+.+.+.. .+...+|||||+|.|...
T Consensus 69 ~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~---------- 132 (472)
T PRK14962 69 EPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE---------- 132 (472)
T ss_pred CCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH----------
Confidence 1 233333321 0112334444444332 234579999999998633
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
.++.|+..++. .++.+++|++|+.+..+.+++++|| ..++|..++.++...+++..+.. +..+.++.++..+
T Consensus 133 -a~~~LLk~LE~--p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s 208 (472)
T PRK14962 133 -AFNALLKTLEE--PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRA 208 (472)
T ss_pred -HHHHHHHHHHh--CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 33556666663 4567888888877789999999999 79999999999999999887753 5677888888876
Q ss_pred cC
Q 047219 490 EE 491 (567)
Q Consensus 490 ~g 491 (567)
.|
T Consensus 209 ~G 210 (472)
T PRK14962 209 SG 210 (472)
T ss_pred CC
Confidence 54
No 84
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.66 E-value=3.9e-15 Score=160.95 Aligned_cols=179 Identities=25% Similarity=0.396 Sum_probs=125.1
Q ss_pred CCCCcccccCcHHHHHH---HHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 275 SEISWENIAGYDQQKRE---IEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~---L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
.+.++++++|++..+.. +++++. .....+++|+||||||||++|+++++.+
T Consensus 7 RP~~l~d~vGq~~~v~~~~~L~~~i~---------------------~~~~~~ilL~GppGtGKTtLA~~ia~~~----- 60 (413)
T PRK13342 7 RPKTLDEVVGQEHLLGPGKPLRRMIE---------------------AGRLSSMILWGPPGTGKTTLARIIAGAT----- 60 (413)
T ss_pred CCCCHHHhcCcHHHhCcchHHHHHHH---------------------cCCCceEEEECCCCCCHHHHHHHHHHHh-----
Confidence 34679999999999766 766663 3445689999999999999999999998
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~ 428 (567)
+..++.+++.... ...++.+++.+.. ...+.+|||||+|.+....+ +.|+..++
T Consensus 61 -~~~~~~l~a~~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q-----------~~LL~~le---- 117 (413)
T PRK13342 61 -DAPFEALSAVTSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQ-----------DALLPHVE---- 117 (413)
T ss_pred -CCCEEEEeccccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHH-----------HHHHHHhh----
Confidence 5567777764321 1234445544432 22468999999999864432 34445444
Q ss_pred CCcEEEEEee--CCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh-------hCHHHHHHHHHhccCCCHHHHHH
Q 047219 429 DKKVVVIAAT--NRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH-------LTKAELAELATATEEMSGRDIRD 499 (567)
Q Consensus 429 ~~~viVIaaT--N~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~-------~~~~~l~~la~~t~g~s~~dL~~ 499 (567)
.+.+++|++| |....++++|++|| ..+.|..++.++...++...+.. +..+.++.++..+.| ..+.+.+
T Consensus 118 ~~~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln 195 (413)
T PRK13342 118 DGTITLIGATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALN 195 (413)
T ss_pred cCcEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHH
Confidence 2467777765 44567999999999 89999999999999999887643 445666777776643 3444444
Q ss_pred HHHHH
Q 047219 500 VCQQA 504 (567)
Q Consensus 500 L~~~a 504 (567)
++..+
T Consensus 196 ~Le~~ 200 (413)
T PRK13342 196 LLELA 200 (413)
T ss_pred HHHHH
Confidence 44443
No 85
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.2e-15 Score=162.85 Aligned_cols=187 Identities=27% Similarity=0.384 Sum_probs=156.0
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcch
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDS 399 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~ 399 (567)
.....+||+|+||||||++++++|.++ +.+++.++|.++.+..-+..+.++...|..|+... ++||||-++|.
T Consensus 429 ~~~~~vLLhG~~g~GK~t~V~~vas~l------g~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~-pavifl~~~dv 501 (953)
T KOG0736|consen 429 TLNPSVLLHGPPGSGKTTVVRAVASEL------GLHLLEVDCYELVAESASHTETKLQAIFSRARRCS-PAVLFLRNLDV 501 (953)
T ss_pred ccceEEEEeCCCCCChHHHHHHHHHHh------CCceEeccHHHHhhcccchhHHHHHHHHHHHhhcC-ceEEEEeccce
Confidence 345679999999999999999999999 88999999999999999999999999999999886 59999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhcCc-ccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhC
Q 047219 400 FAVARDSEMHEATRRILSVLLRQIDGF-EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLT 478 (567)
Q Consensus 400 L~~~~q~~l~~~~~~vl~~LL~~ld~~-~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~ 478 (567)
|...+++....-....+..++. .+.. .....++||++|+..+.+++.+++.|-.+|.++.|+.++|.+|++.++.+..
T Consensus 502 l~id~dgged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~ 580 (953)
T KOG0736|consen 502 LGIDQDGGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP 580 (953)
T ss_pred eeecCCCchhHHHHHHHHHHHh-cccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc
Confidence 9866555333233334444444 2222 3567899999999999999999998888999999999999999999988753
Q ss_pred ---HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHh
Q 047219 479 ---KAELAELATATEEMSGRDIRDVCQQAERSWASKIIR 514 (567)
Q Consensus 479 ---~~~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r~i~ 514 (567)
+..+..++..+.||+.+|+..++.+.-.++..++..
T Consensus 581 ~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~ 619 (953)
T KOG0736|consen 581 LNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKN 619 (953)
T ss_pred cchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHh
Confidence 347789999999999999999999886555555544
No 86
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.65 E-value=2e-15 Score=175.63 Aligned_cols=187 Identities=22% Similarity=0.310 Sum_probs=140.2
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCC
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQ 352 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~ 352 (567)
-+++.++|+++.++++.+.+. .+...+++|+||||||||++|+.+|+.+... .+.
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~---------------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~ 242 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILL---------------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR 242 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHh---------------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcccc
Confidence 467899999998877776553 3445688999999999999999999988432 234
Q ss_pred CcCeEEechhhHHh--hhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 353 GVPLMYVPLEVVMS--KYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 353 ~~~~~~i~~~~l~s--~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
+..++.++...+.. .+.|+.+..++.+++.+.....++||||||||.|.+...... .+...+.|+..+ .++
T Consensus 243 ~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~n~Lkp~l----~~G 315 (852)
T TIGR03345 243 NVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAG---QGDAANLLKPAL----ARG 315 (852)
T ss_pred CCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccc---cccHHHHhhHHh----hCC
Confidence 56678888777663 688999999999999987654468999999999986432211 011223333333 367
Q ss_pred cEEEEEeeCCC-----CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh--------hCHHHHHHHHHhccCC
Q 047219 431 KVVVIAATNRK-----QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH--------LTKAELAELATATEEM 492 (567)
Q Consensus 431 ~viVIaaTN~~-----~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~--------~~~~~l~~la~~t~g~ 492 (567)
.+.+|+||+.. ..++++|.+|| ..|.++.|+.+++.+||+.+... +.++.+..++..+.+|
T Consensus 316 ~l~~IgaTT~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 316 ELRTIAATTWAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred CeEEEEecCHHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 89999999864 35899999999 78999999999999998766542 3466777777776655
No 87
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4.9e-15 Score=163.39 Aligned_cols=190 Identities=19% Similarity=0.213 Sum_probs=136.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~ 353 (567)
.+.+|++|+|++.+++.|+.++.. ...++.+||+||+|||||++|+++|+.+.+.. ...
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~--------------------~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~ 70 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQ--------------------QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSA 70 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHh--------------------CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCc
Confidence 457899999999999999988853 45677899999999999999999999996531 111
Q ss_pred cC-----------------eEEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 354 VP-----------------LMYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 354 ~~-----------------~~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
.+ +++++... ...-+.++.+.+.+. ..++..|+||||+|.|...
T Consensus 71 ~pCg~C~~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~---------- 134 (509)
T PRK14958 71 NPCNDCENCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH---------- 134 (509)
T ss_pred ccCCCCHHHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH----------
Confidence 11 33333221 011233455554433 2234579999999999743
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
..+.|++.++. .+..+++|.+|+.+..+.+.+++|| ..++|..++.++....+...+.. +..+.+..++...
T Consensus 135 -a~naLLk~LEe--pp~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s 210 (509)
T PRK14958 135 -SFNALLKTLEE--PPSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA 210 (509)
T ss_pred -HHHHHHHHHhc--cCCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 34677777774 4567888888888889999999999 88999999988888777777654 4566777888776
Q ss_pred cCCCHHHHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQQAE 505 (567)
Q Consensus 490 ~g~s~~dL~~L~~~a~ 505 (567)
.| +.+++.+++..++
T Consensus 211 ~G-slR~al~lLdq~i 225 (509)
T PRK14958 211 NG-SVRDALSLLDQSI 225 (509)
T ss_pred CC-cHHHHHHHHHHHH
Confidence 54 6667767666554
No 88
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=9.2e-15 Score=155.43 Aligned_cols=190 Identities=17% Similarity=0.214 Sum_probs=134.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC-CCCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM-PWQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~-~~~~ 353 (567)
.+.+|++|+|++..++.++..+.. .+.++.+||+||||||||++|+++++.+... ....
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~--------------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~ 70 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSL--------------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS 70 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHc--------------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 447899999999999999887752 3566778999999999999999999998642 1111
Q ss_pred cC-----------------eEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 354 VP-----------------LMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 354 ~~-----------------~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
-+ +..++... ...-..++.+.+.+.. .+...++||||+|.|...
T Consensus 71 ~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~---------- 134 (363)
T PRK14961 71 NPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH---------- 134 (363)
T ss_pred CCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH----------
Confidence 12 22222210 0112334555544432 223469999999998532
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
..+.|++.++. .+..+.+|.+|+..+.+.+.+++|| ..++|..|+.++..+.+...++. +..+.+..++..+
T Consensus 135 -a~naLLk~lEe--~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s 210 (363)
T PRK14961 135 -SFNALLKTLEE--PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHA 210 (363)
T ss_pred -HHHHHHHHHhc--CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 33567777764 4567788888888888999999999 89999999999999999887764 5567778888877
Q ss_pred cCCCHHHHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQQAE 505 (567)
Q Consensus 490 ~g~s~~dL~~L~~~a~ 505 (567)
.| +.+++.+++..++
T Consensus 211 ~G-~~R~al~~l~~~~ 225 (363)
T PRK14961 211 HG-SMRDALNLLEHAI 225 (363)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 65 5666666665554
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.64 E-value=1.2e-14 Score=151.22 Aligned_cols=162 Identities=22% Similarity=0.323 Sum_probs=113.8
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
....+.++++++|+++.++.++..+.. ...++.+||+||||+|||++|++++++.
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~lll~G~~G~GKT~la~~l~~~~----- 67 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVKK--------------------GRIPNMLLHSPSPGTGKTTVAKALCNEV----- 67 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHhc--------------------CCCCeEEEeeCcCCCCHHHHHHHHHHHh-----
Confidence 344557999999999999999887741 3556777889999999999999999998
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
+.++.+++++. .. .......+..........+.+.+|+|||+|.+.... .+ ..|...++. .+.+
T Consensus 68 -~~~~~~i~~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~-------~~---~~L~~~le~--~~~~ 131 (316)
T PHA02544 68 -GAEVLFVNGSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLAD-------AQ---RHLRSFMEA--YSKN 131 (316)
T ss_pred -CccceEeccCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHH-------HH---HHHHHHHHh--cCCC
Confidence 45577777765 11 111112222222222122346899999999883221 11 223333443 3457
Q ss_pred EEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~ 475 (567)
+.+|++||....+.+++++|| ..+.++.|+.+++.+++..+..
T Consensus 132 ~~~Ilt~n~~~~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~ 174 (316)
T PHA02544 132 CSFIITANNKNGIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIV 174 (316)
T ss_pred ceEEEEcCChhhchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHH
Confidence 789999999999999999999 7899999999999988776543
No 90
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.64 E-value=9.8e-15 Score=163.60 Aligned_cols=189 Identities=20% Similarity=0.261 Sum_probs=136.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~ 353 (567)
.+.+|++|+|++.+++.|++.+.. .+.++.+||+||+|||||++|+++|+.+.+.. ...
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~--------------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~ 70 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDL--------------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA 70 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC
Confidence 447899999999999999887752 35667789999999999999999999996531 111
Q ss_pred cCe-----------------EEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 354 VPL-----------------MYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 354 ~~~-----------------~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
.+| +.++... . ..-+.++.+.+.+. ..++..|+||||+|.|...
T Consensus 71 ~pCg~C~~C~~i~~g~~~D~ieidaas----~--~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~---------- 134 (647)
T PRK07994 71 TPCGECDNCREIEQGRFVDLIEIDAAS----R--TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH---------- 134 (647)
T ss_pred CCCCCCHHHHHHHcCCCCCceeecccc----c--CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH----------
Confidence 222 2232221 0 11233444444433 2234579999999999633
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
.++.||+.++ +.+..+++|++|+.+..+.+.+++|| ..++|..++.++..+.|...+.. +....+..++...
T Consensus 135 -a~NALLKtLE--EPp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s 210 (647)
T PRK07994 135 -SFNALLKTLE--EPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAA 210 (647)
T ss_pred -HHHHHHHHHH--cCCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 4577888887 35678889999999999999999999 99999999999999888887753 4556777787776
Q ss_pred cCCCHHHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQQA 504 (567)
Q Consensus 490 ~g~s~~dL~~L~~~a 504 (567)
.| +.++...++..+
T Consensus 211 ~G-s~R~Al~lldqa 224 (647)
T PRK07994 211 DG-SMRDALSLTDQA 224 (647)
T ss_pred CC-CHHHHHHHHHHH
Confidence 65 455555555443
No 91
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=8.4e-15 Score=159.79 Aligned_cols=190 Identities=20% Similarity=0.253 Sum_probs=140.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC---
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW--- 351 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~--- 351 (567)
.+.+|+||+|++..++.|.+.+.. .+.++++||+||+|||||++|+.+|+.+++...
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~--------------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~ 67 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTL--------------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTS 67 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc--------------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC
Confidence 347899999999999988877642 466789999999999999999999998754210
Q ss_pred ---------------CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 352 ---------------QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 352 ---------------~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
....++.+++..- ..-+.++.+.+.+.. .+...+++|||+|.|...
T Consensus 68 ~pCg~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~---------- 131 (491)
T PRK14964 68 DPCGTCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS---------- 131 (491)
T ss_pred CCccccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHH----------
Confidence 1233455544311 122345555555542 234579999999998632
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
.++.|++.++. .+..+++|.+|+....+.+.+++|| ..++|..++.++..+.+...+.. +..+.+..++..+
T Consensus 132 -A~NaLLK~LEe--Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s 207 (491)
T PRK14964 132 -AFNALLKTLEE--PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENS 207 (491)
T ss_pred -HHHHHHHHHhC--CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 45677888874 5567888888888888999999999 88999999999999998887764 5677888888887
Q ss_pred cCCCHHHHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQQAE 505 (567)
Q Consensus 490 ~g~s~~dL~~L~~~a~ 505 (567)
.| +.+++.+++..+.
T Consensus 208 ~G-slR~alslLdqli 222 (491)
T PRK14964 208 SG-SMRNALFLLEQAA 222 (491)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 55 6666666666554
No 92
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.63 E-value=1e-14 Score=166.99 Aligned_cols=200 Identities=19% Similarity=0.253 Sum_probs=143.4
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--C--CCC
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--P--WQG 353 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~--~~~ 353 (567)
.++.++|.++.++++.+.+. .....++||+||||||||++|+++|+..-.. + +.+
T Consensus 184 ~~~~liGR~~ei~~~i~iL~---------------------r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~ 242 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLC---------------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD 242 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHh---------------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcC
Confidence 45679999999999988664 2345778999999999999999999876322 1 235
Q ss_pred cCeEEechhhHH--hhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc
Q 047219 354 VPLMYVPLEVVM--SKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 354 ~~~~~i~~~~l~--s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
..++.++...+. .++.|+.+.+++.+|..+.... ++||||||||.|.+....... .....+.|...+ ..+.
T Consensus 243 ~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~-~~ILfIDEIh~L~g~g~~~~g--~~d~~nlLkp~L----~~g~ 315 (758)
T PRK11034 243 CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGG--QVDAANLIKPLL----SSGK 315 (758)
T ss_pred CeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcC-CCEEEeccHHHHhccCCCCCc--HHHHHHHHHHHH----hCCC
Confidence 566666666665 4678899999999999887654 589999999999765432111 111222232222 3578
Q ss_pred EEEEEeeCCCC-----CCChHHHhccceEEEecCCCHHHHHHHHHHHHHh--------hCHHHHHHHHHhcc-----CCC
Q 047219 432 VVVIAATNRKQ-----DLDPALISRFDSMITFGLPDHENRQEIAAQYAKH--------LTKAELAELATATE-----EMS 493 (567)
Q Consensus 432 viVIaaTN~~~-----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~--------~~~~~l~~la~~t~-----g~s 493 (567)
+.+|++||.++ ..|++|.+|| ..|.++.|+.+++.+||+.+... +.++.+......+. .+.
T Consensus 316 i~vIgATt~~E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~l 394 (758)
T PRK11034 316 IRVIGSTTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL 394 (758)
T ss_pred eEEEecCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccC
Confidence 99999999754 5799999999 68999999999999999987654 34445544444333 344
Q ss_pred HHHHHHHHHHHHH
Q 047219 494 GRDIRDVCQQAER 506 (567)
Q Consensus 494 ~~dL~~L~~~a~~ 506 (567)
+...-.++.+|..
T Consensus 395 PdKaidlldea~a 407 (758)
T PRK11034 395 PDKAIDVIDEAGA 407 (758)
T ss_pred hHHHHHHHHHHHH
Confidence 5566777777663
No 93
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.1e-14 Score=161.62 Aligned_cols=190 Identities=18% Similarity=0.214 Sum_probs=137.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~ 353 (567)
.+.+|++|+|++.+++.|..++.. .+.++.+||+||+|||||++|+++|+.+.+.. ...
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~--------------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~ 69 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALER--------------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTS 69 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCC
Confidence 447899999999999999888752 45678899999999999999999999986531 111
Q ss_pred c-----------------CeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 354 V-----------------PLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 354 ~-----------------~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
. .++.+++..- ..-+.++.+...+.. .+++.|+||||+|.|...
T Consensus 70 ~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~---------- 133 (702)
T PRK14960 70 TPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH---------- 133 (702)
T ss_pred CCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH----------
Confidence 1 2333333210 112344555544332 234579999999998643
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
..+.|++.++. .+..+.+|++|+.+..+.+.+++|| ..+.|..++.++....+...+.. +..+.+..++..+
T Consensus 134 -A~NALLKtLEE--PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S 209 (702)
T PRK14960 134 -SFNALLKTLEE--PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA 209 (702)
T ss_pred -HHHHHHHHHhc--CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 34667777774 4567888888888888999999999 89999999999999988887764 5677888888887
Q ss_pred cCCCHHHHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQQAE 505 (567)
Q Consensus 490 ~g~s~~dL~~L~~~a~ 505 (567)
.| +.+++.+++..+.
T Consensus 210 ~G-dLRdALnLLDQaI 224 (702)
T PRK14960 210 QG-SLRDALSLTDQAI 224 (702)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 65 5555555554443
No 94
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.63 E-value=5e-15 Score=148.99 Aligned_cols=190 Identities=21% Similarity=0.247 Sum_probs=133.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
..+-+|+++.|++.+++.|+..+. .....++|||||||||||+.|++++++++......
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~---------------------~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~ 88 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALL---------------------RRILPHYLFYGPPGTGKTSTALAFARALNCEQLFP 88 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHh---------------------hcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccc
Confidence 345689999999999999998875 23456899999999999999999999996532222
Q ss_pred cCeEEechhhHHhhhhch-hHHHHHHHHHHH-----hcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc
Q 047219 354 VPLMYVPLEVVMSKYYGE-SERLLGKVFSLA-----NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE 427 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~-~~~~l~~~f~~A-----~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~ 427 (567)
..+...+.+...+.-++. .-+.+..+.... ....+..|++|||.|.|..+ ..+.|.+.|+.
T Consensus 89 ~rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-----------aq~aLrr~mE~-- 155 (346)
T KOG0989|consen 89 CRVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-----------AQAALRRTMED-- 155 (346)
T ss_pred cchhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHH-----------HHHHHHHHHhc--
Confidence 233334444443322211 111111111111 11234489999999999744 44566677775
Q ss_pred cCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHH
Q 047219 428 QDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 428 ~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~ 502 (567)
....+++|..||....+...+.+|| ..+.|+....+.....|+.++.. +.++.++.++....| ||+....
T Consensus 156 ~s~~trFiLIcnylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~Ait 229 (346)
T KOG0989|consen 156 FSRTTRFILICNYLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRAIT 229 (346)
T ss_pred cccceEEEEEcCChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHHHH
Confidence 4568899999999999999999999 88999888888888888887764 667788888887766 5544443
No 95
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.63 E-value=4e-15 Score=170.27 Aligned_cols=241 Identities=18% Similarity=0.274 Sum_probs=152.3
Q ss_pred CCHHHHHHHHHHHhhhcccccccCccccccCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCC
Q 047219 243 LTSEELDALVSVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRP 322 (567)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p 322 (567)
++..++..+++.+...+......++..........--..|+|++++++.|.+.+...... +. ....+.
T Consensus 421 v~~~~i~~v~~~~tgip~~~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~g------l~------~~~kp~ 488 (758)
T PRK11034 421 VNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAG------LG------HEHKPV 488 (758)
T ss_pred cChhhHHHHHHHHhCCChhhhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhcc------cc------CCCCCc
Confidence 445566666666665544332222221111112223356899999999999988754111 00 002334
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHH-----hhhhchhHH----HHHHHHHHHhcCCCCcEEE
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVM-----SKYYGESER----LLGKVFSLANELPNGAIIF 393 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~-----s~~~G~~~~----~l~~~f~~A~~~a~~~ILf 393 (567)
.++||+||||||||.+|+++|+.+ +.+++.++++++. ++++|.... .....+..+....|.+|||
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l------~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVll 562 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKAL------GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLL 562 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEE
Confidence 579999999999999999999999 5567777777653 344443211 1112333333344579999
Q ss_pred EcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc---------cCCcEEEEEeeCCC-----------------------
Q 047219 394 LDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE---------QDKKVVVIAATNRK----------------------- 441 (567)
Q Consensus 394 IDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~---------~~~~viVIaaTN~~----------------------- 441 (567)
|||||++.+. +++.|++.++.-. .-.++++|+|||.-
T Consensus 563 lDEieka~~~-----------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~ 631 (758)
T PRK11034 563 LDEIEKAHPD-----------VFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEE 631 (758)
T ss_pred eccHhhhhHH-----------HHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHH
Confidence 9999998644 4455555554321 12478899999931
Q ss_pred --CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh-------------hCHHHHHHHHHh--ccCCCHHHHHHHHHHH
Q 047219 442 --QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH-------------LTKAELAELATA--TEEMSGRDIRDVCQQA 504 (567)
Q Consensus 442 --~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~-------------~~~~~l~~la~~--t~g~s~~dL~~L~~~a 504 (567)
..|.|+|+.|++.++.|..++.++..+|+...+.. +.+...+.++.. ...+-.+.|+.++...
T Consensus 632 ~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~ 711 (758)
T PRK11034 632 IKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVIQDN 711 (758)
T ss_pred HHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 23789999999999999999999999999877653 234455556543 2234567777777766
Q ss_pred HHHHHHHH
Q 047219 505 ERSWASKI 512 (567)
Q Consensus 505 ~~~a~~r~ 512 (567)
....+...
T Consensus 712 l~~~la~~ 719 (758)
T PRK11034 712 LKKPLANE 719 (758)
T ss_pred HHHHHHHH
Confidence 65444433
No 96
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=2.3e-14 Score=157.45 Aligned_cols=197 Identities=20% Similarity=0.219 Sum_probs=139.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC-C
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-Q 352 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-~ 352 (567)
..+.+|++++|++..++.|+..+.. .+.+.++||+||||||||++|+++|+.+.+... .
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~--------------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~ 74 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILN--------------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALIT 74 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc--------------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccc
Confidence 4557899999999999998886642 456789999999999999999999999965311 0
Q ss_pred C----cCeEEe-chhhHHhhh----------hchhHHHHHHHHHHHhcC---CCCcEEEEcCcchhhhhhhhhhHHHHHH
Q 047219 353 G----VPLMYV-PLEVVMSKY----------YGESERLLGKVFSLANEL---PNGAIIFLDEVDSFAVARDSEMHEATRR 414 (567)
Q Consensus 353 ~----~~~~~i-~~~~l~s~~----------~G~~~~~l~~~f~~A~~~---a~~~ILfIDEID~L~~~~q~~l~~~~~~ 414 (567)
+ .+|... +|..+.... -......++.+++.+... +...|+||||+|.|...
T Consensus 75 ~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~----------- 143 (507)
T PRK06645 75 ENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG----------- 143 (507)
T ss_pred cCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH-----------
Confidence 0 111111 111111100 011234566666665432 34579999999998632
Q ss_pred HHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhcc
Q 047219 415 ILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATE 490 (567)
Q Consensus 415 vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~ 490 (567)
.++.|++.++. .+..+++|++|+..+.+.+.+++|| ..++|..++.++....++..++. +..+.+..++..+.
T Consensus 144 a~naLLk~LEe--pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~ 220 (507)
T PRK06645 144 AFNALLKTLEE--PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSE 220 (507)
T ss_pred HHHHHHHHHhh--cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 34567777763 4667888888888889999999999 78999999999999999988864 45667888888776
Q ss_pred CCCHHHHHHHHHHHH
Q 047219 491 EMSGRDIRDVCQQAE 505 (567)
Q Consensus 491 g~s~~dL~~L~~~a~ 505 (567)
| +.+++.+++..+.
T Consensus 221 G-slR~al~~Ldkai 234 (507)
T PRK06645 221 G-SARDAVSILDQAA 234 (507)
T ss_pred C-CHHHHHHHHHHHH
Confidence 5 6666666665554
No 97
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.62 E-value=3.2e-14 Score=140.91 Aligned_cols=199 Identities=19% Similarity=0.293 Sum_probs=124.6
Q ss_pred CCCCccccc-Cc--HHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 275 SEISWENIA-GY--DQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 275 ~~~~~~dIi-G~--~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
++++|++.+ |. ..+...+......+ .....+++||||+|+|||+|.++++++.... .
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~-------------------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-~ 62 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP-------------------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQ-H 62 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST-------------------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHH-C
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC-------------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhc-c
Confidence 568999985 53 33344443333211 2334579999999999999999999987421 1
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
.+..++++++.++...+..........-|...... ..+|+||+++.+..+ +.+...|...++.+...+.
T Consensus 63 ~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~--~DlL~iDDi~~l~~~---------~~~q~~lf~l~n~~~~~~k 131 (219)
T PF00308_consen 63 PGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRS--ADLLIIDDIQFLAGK---------QRTQEELFHLFNRLIESGK 131 (219)
T ss_dssp TTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCT--SSEEEEETGGGGTTH---------HHHHHHHHHHHHHHHHTTS
T ss_pred ccccceeecHHHHHHHHHHHHHcccchhhhhhhhc--CCEEEEecchhhcCc---------hHHHHHHHHHHHHHHhhCC
Confidence 15679999999888765433222111122222233 469999999999755 2233455555555555566
Q ss_pred EEEEEeeCCCCC---CChHHHhccce--EEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHH
Q 047219 432 VVVIAATNRKQD---LDPALISRFDS--MITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 432 viVIaaTN~~~~---Ld~aL~sRf~~--~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~ 502 (567)
.+||++...|.. ++++|.+||.. .+.+..|+.+.|.++++..+.. ++++.++.++.... -+.++|..+++
T Consensus 132 ~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~ 210 (219)
T PF00308_consen 132 QLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALN 210 (219)
T ss_dssp EEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHH
T ss_pred eEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHH
Confidence 666666555554 67999999954 8899999999999999998875 56667777777754 36667766666
Q ss_pred HHH
Q 047219 503 QAE 505 (567)
Q Consensus 503 ~a~ 505 (567)
...
T Consensus 211 ~l~ 213 (219)
T PF00308_consen 211 RLD 213 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 98
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.62 E-value=1.1e-14 Score=159.09 Aligned_cols=172 Identities=17% Similarity=0.237 Sum_probs=118.3
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSF 400 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L 400 (567)
..++++||||||||||+|++++++++... ..+..++++++..+...+...........|...... ..+|+|||||.+
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dlLiiDDi~~l 223 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYILEK-NPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRS--VDVLLIDDIQFL 223 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhc--CCEEEEehhhhh
Confidence 34679999999999999999999998432 114568899999887766544322111222222222 469999999998
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCC---CChHHHhccc--eEEEecCCCHHHHHHHHHHHHH
Q 047219 401 AVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQD---LDPALISRFD--SMITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 401 ~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~---Ld~aL~sRf~--~~I~i~~P~~~eR~eIL~~~~~ 475 (567)
.++.. ....|+..++.+...+..+||++...+.. ++++|++||. ..++|+.|+.++|.+|++..+.
T Consensus 224 ~~~~~---------~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~ 294 (450)
T PRK00149 224 AGKER---------TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAE 294 (450)
T ss_pred cCCHH---------HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHH
Confidence 75521 11233343333333344566666655554 7799999995 4899999999999999999887
Q ss_pred h----hCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 476 H----LTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 476 ~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
. ++++.++.++....+ +.++|..+++...
T Consensus 295 ~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~ 327 (450)
T PRK00149 295 EEGIDLPDEVLEFIAKNITS-NVRELEGALNRLI 327 (450)
T ss_pred HcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHH
Confidence 4 577788888888655 5666666666554
No 99
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=1.6e-14 Score=161.54 Aligned_cols=197 Identities=18% Similarity=0.220 Sum_probs=139.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQ 352 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~ 352 (567)
..+.+|++|+|++.+++.|++.+.. .+.++.+||+||+|||||++|+++++.+.+.. ..
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~--------------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~ 69 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE--------------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH 69 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC
Confidence 3457899999999999999988752 45678899999999999999999999986531 11
Q ss_pred CcCeEEec-hhhHHhh-h---------hchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHH
Q 047219 353 GVPLMYVP-LEVVMSK-Y---------YGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSV 418 (567)
Q Consensus 353 ~~~~~~i~-~~~l~s~-~---------~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~ 418 (567)
..+|.... |..+... + .....+.++.+++.+.. .+...|+||||+|.|... .++.
T Consensus 70 ~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~-----------A~NA 138 (709)
T PRK08691 70 GEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS-----------AFNA 138 (709)
T ss_pred CCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH-----------HHHH
Confidence 12222111 1111110 0 01122345666554432 234579999999988532 3467
Q ss_pred HHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCH
Q 047219 419 LLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSG 494 (567)
Q Consensus 419 LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~ 494 (567)
|++.++. .+..+.+|++|+.+..+.+.+++|| ..+.|..++.++....|...+.. +....+..+++...| +.
T Consensus 139 LLKtLEE--Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-sl 214 (709)
T PRK08691 139 MLKTLEE--PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SM 214 (709)
T ss_pred HHHHHHh--CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CH
Confidence 7777774 4567888889998999999999999 88999999999999999888775 456678888887654 66
Q ss_pred HHHHHHHHHHH
Q 047219 495 RDIRDVCQQAE 505 (567)
Q Consensus 495 ~dL~~L~~~a~ 505 (567)
+++.+++..+.
T Consensus 215 RdAlnLLDqai 225 (709)
T PRK08691 215 RDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHHH
Confidence 67767666554
No 100
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.61 E-value=7.6e-15 Score=171.14 Aligned_cols=171 Identities=20% Similarity=0.276 Sum_probs=130.2
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCC
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQ 352 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~ 352 (567)
-.++.++|++..++++.+.+. .+...+++|+||||||||++|+++|..+... .+.
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~---------------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~ 233 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQ---------------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLK 233 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHh---------------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhC
Confidence 357889999998888877664 3445689999999999999999999988532 223
Q ss_pred CcCeEEechhhHH--hhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 353 GVPLMYVPLEVVM--SKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 353 ~~~~~~i~~~~l~--s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
+.+++.++...+. .++.|+.+..++.+|+.+.....++||||||+|.|.+........ +..+.|...+ .++
T Consensus 234 ~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~---d~~~~lkp~l----~~g 306 (857)
T PRK10865 234 GRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPAL----ARG 306 (857)
T ss_pred CCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccch---hHHHHhcchh----hcC
Confidence 6778888877765 468899999999999986554446899999999998664322111 1122333322 467
Q ss_pred cEEEEEeeCCCC-----CCChHHHhccceEEEecCCCHHHHHHHHHHHHHh
Q 047219 431 KVVVIAATNRKQ-----DLDPALISRFDSMITFGLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 431 ~viVIaaTN~~~-----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~ 476 (567)
.+.+|++|+..+ .+|++|.+|| ..|.+..|+.+++..|++.+...
T Consensus 307 ~l~~IgaTt~~e~r~~~~~d~al~rRf-~~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 307 ELHCVGATTLDEYRQYIEKDAALERRF-QKVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred CCeEEEcCCCHHHHHHhhhcHHHHhhC-CEEEeCCCCHHHHHHHHHHHhhh
Confidence 899999999865 4899999999 47889999999999999877643
No 101
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.61 E-value=1.7e-14 Score=155.50 Aligned_cols=172 Identities=17% Similarity=0.249 Sum_probs=116.6
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHH-HHHHHHHHHhcCCCCcEEEEcCcch
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESER-LLGKVFSLANELPNGAIIFLDEVDS 399 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~-~l~~~f~~A~~~a~~~ILfIDEID~ 399 (567)
...+++||||+|||||+|++++++++... ..+..++++++.++...+...... ....+.+... . ..+|+|||||.
T Consensus 135 ~~n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~dlLiiDDi~~ 210 (405)
T TIGR00362 135 AYNPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYR-S--VDLLLIDDIQF 210 (405)
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHH-h--CCEEEEehhhh
Confidence 45679999999999999999999988432 114678899998887665443221 1112222222 2 36999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCC---CChHHHhccce--EEEecCCCHHHHHHHHHHHH
Q 047219 400 FAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQD---LDPALISRFDS--MITFGLPDHENRQEIAAQYA 474 (567)
Q Consensus 400 L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~---Ld~aL~sRf~~--~I~i~~P~~~eR~eIL~~~~ 474 (567)
+.++.. ....|+..++.....+..+||+++..+.. +++.|++||.. .++|+.|+.++|.+|++..+
T Consensus 211 l~~~~~---------~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 211 LAGKER---------TQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred hcCCHH---------HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 875421 11233333333323334455555555443 67899999954 79999999999999999988
Q ss_pred Hh----hCHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 475 KH----LTKAELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 475 ~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
.. ++++.++.++....+ +.++|..+++....
T Consensus 282 ~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 282 EEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLA 316 (405)
T ss_pred HHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 74 567788888887654 67777777776553
No 102
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.61 E-value=1.1e-14 Score=170.35 Aligned_cols=238 Identities=22% Similarity=0.237 Sum_probs=152.5
Q ss_pred cCCHHHHHHHHHHHhhhcccccccCccccccCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCC
Q 047219 242 SLTSEELDALVSVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNR 321 (567)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~ 321 (567)
.++..++..+++.+...+......++..........-...|+|++.+++.+.+.+...... +. ....+
T Consensus 527 ~v~~~~i~~v~~~~tgip~~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g------l~------~~~~p 594 (852)
T TIGR03346 527 EVTAEEIAEVVSRWTGIPVSKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAG------LS------DPNRP 594 (852)
T ss_pred CcCHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhcc------CC------CCCCC
Confidence 4677788888888776655433333222211222234567999999999999988754110 00 00234
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhh-----hh-------chhHHHHHHHHHHHhcCCCC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSK-----YY-------GESERLLGKVFSLANELPNG 389 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~-----~~-------G~~~~~l~~~f~~A~~~a~~ 389 (567)
...+||+||||||||++|+++|..+... +.+++.++++++... ++ |+.+ ...+..+....|.
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~---~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~---~g~l~~~v~~~p~ 668 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDD---EDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEE---GGQLTEAVRRKPY 668 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCC---CCcEEEEechhhcccchHHHhcCCCCCccCccc---ccHHHHHHHcCCC
Confidence 5679999999999999999999998544 456888887765432 22 2211 1123333334467
Q ss_pred cEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc---------ccCCcEEEEEeeCCC-------------------
Q 047219 390 AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---------EQDKKVVVIAATNRK------------------- 441 (567)
Q Consensus 390 ~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~---------~~~~~viVIaaTN~~------------------- 441 (567)
+|||||||+.+.+..+ +.|++.++.- ..-.+++||+|||..
T Consensus 669 ~vlllDeieka~~~v~-----------~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~ 737 (852)
T TIGR03346 669 SVVLFDEVEKAHPDVF-----------NVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREA 737 (852)
T ss_pred cEEEEeccccCCHHHH-----------HHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHH
Confidence 8999999999875533 3444444321 112467899999971
Q ss_pred ------CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh-------------CHHHHHHHHHhcc--CCCHHHHHHH
Q 047219 442 ------QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL-------------TKAELAELATATE--EMSGRDIRDV 500 (567)
Q Consensus 442 ------~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~-------------~~~~l~~la~~t~--g~s~~dL~~L 500 (567)
+.|.|+|++|++.++.|.+++.++..+|+...+..+ ..+..+.++...+ .+..+.|+++
T Consensus 738 ~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~ 817 (852)
T TIGR03346 738 VMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRA 817 (852)
T ss_pred HHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHH
Confidence 137789999999999999999999999988776532 3334555555433 4556666666
Q ss_pred HHHHHHHH
Q 047219 501 CQQAERSW 508 (567)
Q Consensus 501 ~~~a~~~a 508 (567)
+.......
T Consensus 818 i~~~i~~~ 825 (852)
T TIGR03346 818 IQREIENP 825 (852)
T ss_pred HHHHHHHH
Confidence 66555433
No 103
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.61 E-value=4.4e-14 Score=147.91 Aligned_cols=192 Identities=20% Similarity=0.287 Sum_probs=129.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
.+.+|++++|++++++.+.+.+. .+...++||+||||||||++|+++++++....+ ..
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~---------------------~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~-~~ 67 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVD---------------------SPNLPHLLVQGPPGSGKTAAVRALARELYGDPW-EN 67 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHh---------------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccc-cc
Confidence 45689999999999999888664 222347999999999999999999999864321 23
Q ss_pred CeEEechhhHHhhh-------------hch-------hHHHHHHHHHHHhc----CCCCcEEEEcCcchhhhhhhhhhHH
Q 047219 355 PLMYVPLEVVMSKY-------------YGE-------SERLLGKVFSLANE----LPNGAIIFLDEVDSFAVARDSEMHE 410 (567)
Q Consensus 355 ~~~~i~~~~l~s~~-------------~G~-------~~~~l~~~f~~A~~----~a~~~ILfIDEID~L~~~~q~~l~~ 410 (567)
+++++++.++.... ++. ....++.+...... ..+..+|||||+|.+....
T Consensus 68 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~------ 141 (337)
T PRK12402 68 NFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDA------ 141 (337)
T ss_pred ceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHH------
Confidence 56777776543221 111 01222332222221 1335799999999986432
Q ss_pred HHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHH
Q 047219 411 ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELA 486 (567)
Q Consensus 411 ~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la 486 (567)
...|...++.. +..+.+|.+++.+..+.+.|.+|+ ..+.+..|+.++...++...+.. +..+.++.++
T Consensus 142 -----~~~L~~~le~~--~~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~ 213 (337)
T PRK12402 142 -----QQALRRIMEQY--SRTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIA 213 (337)
T ss_pred -----HHHHHHHHHhc--cCCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 12344444432 234566667766777888999998 78999999999999999987764 5677888888
Q ss_pred HhccCCCHHHHHHHHHHHHH
Q 047219 487 TATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 487 ~~t~g~s~~dL~~L~~~a~~ 506 (567)
..+. +|++.+.+....
T Consensus 214 ~~~~----gdlr~l~~~l~~ 229 (337)
T PRK12402 214 YYAG----GDLRKAILTLQT 229 (337)
T ss_pred HHcC----CCHHHHHHHHHH
Confidence 7763 356666655543
No 104
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.7e-14 Score=155.98 Aligned_cols=188 Identities=24% Similarity=0.308 Sum_probs=149.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
.-.+.++||+||+|||||.|++++++++.... .+.+..++|+.+..+-+....+.+..+|..+.+++| +||+||++|
T Consensus 428 v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~--~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~P-SiIvLDdld 504 (952)
T KOG0735|consen 428 VFRHGNILLNGPKGSGKTNLVKALFDYYSKDL--IAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAP-SIIVLDDLD 504 (952)
T ss_pred ccccccEEEeCCCCCCHhHHHHHHHHHhcccc--ceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCC-cEEEEcchh
Confidence 34567899999999999999999999986321 456788899988887777788889999999999996 999999999
Q ss_pred hhhhhhh--hhhHHHHHHHHHHHH-HhhcCc-ccCCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHH
Q 047219 399 SFAVARD--SEMHEATRRILSVLL-RQIDGF-EQDKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQ 472 (567)
Q Consensus 399 ~L~~~~q--~~l~~~~~~vl~~LL-~~ld~~-~~~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~ 472 (567)
.|+.... ..........+..++ ..+..+ ..+..+.||++.+....+++-|.+ +|+.++.++.|+..+|.+||..
T Consensus 505 ~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~ 584 (952)
T KOG0735|consen 505 CLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTT 584 (952)
T ss_pred hhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHH
Confidence 9987322 222223233333444 333222 344567999999999999999988 8999999999999999999999
Q ss_pred HHHhh----CHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 047219 473 YAKHL----TKAELAELATATEEMSGRDIRDVCQQAERSWA 509 (567)
Q Consensus 473 ~~~~~----~~~~l~~la~~t~g~s~~dL~~L~~~a~~~a~ 509 (567)
.+.+- ..++++-++..|+||...|+..++.+|...+.
T Consensus 585 ~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~ 625 (952)
T KOG0735|consen 585 IFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAF 625 (952)
T ss_pred HHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHH
Confidence 88763 34567779999999999999999999886555
No 105
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=6.5e-14 Score=154.26 Aligned_cols=177 Identities=19% Similarity=0.251 Sum_probs=127.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC-CC--
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM-PW-- 351 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~-~~-- 351 (567)
.+.+|++|+|++.+++.|...+.. ...++.+||+||||||||++|+++++.+.+. +.
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~--------------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~ 68 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQ--------------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPK 68 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCC
Confidence 457899999999999999888752 3456678999999999999999999998542 10
Q ss_pred --------------CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHH
Q 047219 352 --------------QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRR 414 (567)
Q Consensus 352 --------------~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~ 414 (567)
....+..++... ......++.+.+.+.. .....++||||+|.+.. .
T Consensus 69 ~cg~C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-----------~ 131 (504)
T PRK14963 69 PCGECESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-----------S 131 (504)
T ss_pred CCCcChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCCeEEEEECccccCH-----------H
Confidence 012234444321 0112334444333332 23457999999998752 2
Q ss_pred HHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhcc
Q 047219 415 ILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATE 490 (567)
Q Consensus 415 vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~ 490 (567)
.++.|++.++. .+..+++|.+||.+..+.+.+.+|| ..++|..|+.++..+.+...++. +..+.+..++..+.
T Consensus 132 a~naLLk~LEe--p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~ 208 (504)
T PRK14963 132 AFNALLKTLEE--PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLAD 208 (504)
T ss_pred HHHHHHHHHHh--CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 34667777764 3457788888888899999999999 78999999999999999887764 35667788887766
Q ss_pred C
Q 047219 491 E 491 (567)
Q Consensus 491 g 491 (567)
|
T Consensus 209 G 209 (504)
T PRK14963 209 G 209 (504)
T ss_pred C
Confidence 5
No 106
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.60 E-value=1.3e-14 Score=167.24 Aligned_cols=236 Identities=22% Similarity=0.297 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHHHhhhcccccccCccccccCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhccccccc-CCC
Q 047219 243 LTSEELDALVSVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFE-SNR 321 (567)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~-~~~ 321 (567)
++..++..+++.+...+......++..........-.+.|+|++++++.+.+.+.... .+ . .. ..+
T Consensus 417 v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~--------~g--~---~~~~~p 483 (731)
T TIGR02639 417 VSVKDIENVVAKMAHIPVKTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSR--------AG--L---GNPNKP 483 (731)
T ss_pred cCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHh--------cC--C---CCCCCC
Confidence 5566667776666554432222221111111222335678999999999988876431 00 0 00 123
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhh-----hhchhH----HHHHHHHHHHhcCCCCcEE
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSK-----YYGESE----RLLGKVFSLANELPNGAII 392 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~-----~~G~~~----~~l~~~f~~A~~~a~~~IL 392 (567)
..++||+||||||||++|+++|+.+ +.+++.++++++... ++|... ..-...+..+....|.+||
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l------~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~Vv 557 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEAL------GVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVL 557 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHh------cCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEE
Confidence 3458999999999999999999999 567888887776432 222211 0011223333344567999
Q ss_pred EEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc---------cCCcEEEEEeeCCC----------------------
Q 047219 393 FLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE---------QDKKVVVIAATNRK---------------------- 441 (567)
Q Consensus 393 fIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~---------~~~~viVIaaTN~~---------------------- 441 (567)
+|||||++.+. +.+.|++.++... .-.++++|+|||.-
T Consensus 558 llDEieka~~~-----------~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~ 626 (731)
T TIGR02639 558 LLDEIEKAHPD-----------IYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDK 626 (731)
T ss_pred EEechhhcCHH-----------HHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHH
Confidence 99999998654 3445555555321 12468899999862
Q ss_pred ---CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh-------------CHHHHHHHHHh--ccCCCHHHHHHHHHH
Q 047219 442 ---QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL-------------TKAELAELATA--TEEMSGRDIRDVCQQ 503 (567)
Q Consensus 442 ---~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~-------------~~~~l~~la~~--t~g~s~~dL~~L~~~ 503 (567)
..|.|+|+.|++.++.|.+.+.++..+|++..++.+ .++..+.++.. ...+..+.|+.+++.
T Consensus 627 ~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 627 AIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHHH
Confidence 137889999999999999999999999999877642 23344455542 334556666666666
Q ss_pred HHHHH
Q 047219 504 AERSW 508 (567)
Q Consensus 504 a~~~a 508 (567)
.....
T Consensus 707 ~~~~~ 711 (731)
T TIGR02639 707 EIKKP 711 (731)
T ss_pred HhHHH
Confidence 55444
No 107
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.60 E-value=3e-14 Score=166.22 Aligned_cols=237 Identities=20% Similarity=0.231 Sum_probs=153.3
Q ss_pred cCCHHHHHHHHHHHhhhcccccccCccccccCCCCCCcccccCcHHHHHHHHHHHHHhc---cChhhHHhhhhccccccc
Q 047219 242 SLTSEELDALVSVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSL---QSPEVYDDIARGTRCKFE 318 (567)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l---~~pelf~~l~~~~~~~~~ 318 (567)
.++..++..+++.++..++.....++............+.|+|++.+++.+.+.+.... ..|
T Consensus 530 ~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~--------------- 594 (857)
T PRK10865 530 KVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDP--------------- 594 (857)
T ss_pred ccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCC---------------
Confidence 46778888899988887765433333322223344556789999999999999987541 111
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhh-----hhchhHH----HHHHHHHHHhcCCCC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSK-----YYGESER----LLGKVFSLANELPNG 389 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~-----~~G~~~~----~l~~~f~~A~~~a~~ 389 (567)
..+..++||+||||||||++|++||+.+... +.+++.++++++... ++|.... .-...+..+....|+
T Consensus 595 ~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~---~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~ 671 (857)
T PRK10865 595 NRPIGSFLFLGPTGVGKTELCKALANFMFDS---DDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPY 671 (857)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhhcC---CCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCC
Confidence 1223478999999999999999999988543 346788888766432 3322100 011233444444567
Q ss_pred cEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc---------ccCCcEEEEEeeCCC-------------------
Q 047219 390 AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---------EQDKKVVVIAATNRK------------------- 441 (567)
Q Consensus 390 ~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~---------~~~~~viVIaaTN~~------------------- 441 (567)
++||||||+.+.+..+ +.|+..++.- ..-.++++|+|||..
T Consensus 672 ~vLllDEieka~~~v~-----------~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~ 740 (857)
T PRK10865 672 SVILLDEVEKAHPDVF-----------NILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKEL 740 (857)
T ss_pred CeEEEeehhhCCHHHH-----------HHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHH
Confidence 9999999999875533 3344444321 112356799999861
Q ss_pred ------CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh-------------CHHHHHHHHHhc--cCCCHHHHHHH
Q 047219 442 ------QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL-------------TKAELAELATAT--EEMSGRDIRDV 500 (567)
Q Consensus 442 ------~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~-------------~~~~l~~la~~t--~g~s~~dL~~L 500 (567)
..|.|+|++|++.++.|.+++.++..+|+...+..+ ..+.++.++... ..+..+.|+.+
T Consensus 741 ~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~ 820 (857)
T PRK10865 741 VLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRA 820 (857)
T ss_pred HHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHH
Confidence 247789999999999999999999999888776542 233444454421 12335566666
Q ss_pred HHHHHHH
Q 047219 501 CQQAERS 507 (567)
Q Consensus 501 ~~~a~~~ 507 (567)
++.....
T Consensus 821 I~~~i~~ 827 (857)
T PRK10865 821 IQQQIEN 827 (857)
T ss_pred HHHHHHH
Confidence 6665544
No 108
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.60 E-value=7.7e-14 Score=137.90 Aligned_cols=186 Identities=15% Similarity=0.206 Sum_probs=124.1
Q ss_pred CCCCccccc--CcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 275 SEISWENIA--GYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 275 ~~~~~~dIi--G~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
...+|++.+ +...+++.+++.+. ...+.+++|+||+|||||++|+++++++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--- 65 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAA---------------------GKGDRFLYLWGESGSGKSHLLQAACAAAEER--- 65 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHh---------------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhc---
Confidence 346777776 35556666666542 3457899999999999999999999988533
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
+.+++++++..+.... ..++.... ...+|+|||+|.+...... ...+...++.......
T Consensus 66 ~~~~~~i~~~~~~~~~--------~~~~~~~~---~~~lLvIDdi~~l~~~~~~---------~~~L~~~l~~~~~~~~- 124 (226)
T TIGR03420 66 GKSAIYLPLAELAQAD--------PEVLEGLE---QADLVCLDDVEAIAGQPEW---------QEALFHLYNRVREAGG- 124 (226)
T ss_pred CCcEEEEeHHHHHHhH--------HHHHhhcc---cCCEEEEeChhhhcCChHH---------HHHHHHHHHHHHHcCC-
Confidence 4578899998876532 12222222 2469999999998654210 1122222222112223
Q ss_pred EEEEeeC-CCCCC---ChHHHhccc--eEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHH
Q 047219 433 VVIAATN-RKQDL---DPALISRFD--SMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 433 iVIaaTN-~~~~L---d~aL~sRf~--~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~ 502 (567)
.+|.+++ .+..+ .+.|.+||. ..+.++.|+.+++..+++.++.+ +..+.+..++.. ++-+.++++.+++
T Consensus 125 ~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~ 203 (226)
T TIGR03420 125 RLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLD 203 (226)
T ss_pred eEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHH
Confidence 3444554 33333 288998873 68899999999999999877653 567778888885 6678999999988
Q ss_pred HHHH
Q 047219 503 QAER 506 (567)
Q Consensus 503 ~a~~ 506 (567)
.+..
T Consensus 204 ~~~~ 207 (226)
T TIGR03420 204 ALDR 207 (226)
T ss_pred HHHH
Confidence 8664
No 109
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.59 E-value=2.9e-14 Score=162.61 Aligned_cols=176 Identities=23% Similarity=0.341 Sum_probs=120.3
Q ss_pred CCCCCcccccCcHHHHH---HHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC
Q 047219 274 KSEISWENIAGYDQQKR---EIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP 350 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~---~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~ 350 (567)
..+.+|++++|++..+. .+++++. .....+++||||||||||++|+++|+.+
T Consensus 22 ~RP~tldd~vGQe~ii~~~~~L~~~i~---------------------~~~~~slLL~GPpGtGKTTLA~aIA~~~---- 76 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEGRLLRRAIK---------------------ADRVGSLILYGPPGVGKTTLARIIANHT---- 76 (725)
T ss_pred cCCCcHHHhcCcHHHhhhhHHHHHHHh---------------------cCCCceEEEECCCCCCHHHHHHHHHHHh----
Confidence 34578999999999885 4544443 3345689999999999999999999988
Q ss_pred CCCcCeEEechhhHHhhhhchhHHHHHHHHHHH----hcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc
Q 047219 351 WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLA----NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF 426 (567)
Q Consensus 351 ~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A----~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~ 426 (567)
..++..+++..... +.++..++.+ .......+|||||||.|....| +.|+..++
T Consensus 77 --~~~f~~lna~~~~i-------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQ-----------daLL~~lE-- 134 (725)
T PRK13341 77 --RAHFSSLNAVLAGV-------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQ-----------DALLPWVE-- 134 (725)
T ss_pred --cCcceeehhhhhhh-------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHH-----------HHHHHHhc--
Confidence 44566666542111 1122222222 1222357999999999975433 33444444
Q ss_pred ccCCcEEEEEee--CCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh-----------hCHHHHHHHHHhccCCC
Q 047219 427 EQDKKVVVIAAT--NRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH-----------LTKAELAELATATEEMS 493 (567)
Q Consensus 427 ~~~~~viVIaaT--N~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~-----------~~~~~l~~la~~t~g~s 493 (567)
.+.+++|++| |+...+++++++|+ ..+.|+.++.+++..+++..+.. +.++.++.++....|
T Consensus 135 --~g~IiLI~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-- 209 (725)
T PRK13341 135 --NGTITLIGATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-- 209 (725)
T ss_pred --CceEEEEEecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC--
Confidence 3567788776 34457899999998 78999999999999999988761 456677777776543
Q ss_pred HHHHHHHHHH
Q 047219 494 GRDIRDVCQQ 503 (567)
Q Consensus 494 ~~dL~~L~~~ 503 (567)
|++.+.+.
T Consensus 210 --D~R~lln~ 217 (725)
T PRK13341 210 --DARSLLNA 217 (725)
T ss_pred --CHHHHHHH
Confidence 55555443
No 110
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.59 E-value=1.5e-14 Score=168.65 Aligned_cols=187 Identities=21% Similarity=0.314 Sum_probs=141.4
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCCC
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQG 353 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~~ 353 (567)
.++.++|.++.++++.+.+. ....++++|+||||||||++|+++|..+... .+.+
T Consensus 177 ~~~~~igr~~ei~~~~~~L~---------------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~ 235 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG---------------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILED 235 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc---------------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 47889999999999988764 3456789999999999999999999987432 2335
Q ss_pred cCeEEechhhHH--hhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc
Q 047219 354 VPLMYVPLEVVM--SKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 354 ~~~~~i~~~~l~--s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
..++.++...+. .+|.|+.+.+++.+++.+.... ++||||||||.|.+........ ...+.|...+ .++.
T Consensus 236 ~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~-~~ILfiDEih~l~~~g~~~g~~---~~a~lLkp~l----~rg~ 307 (821)
T CHL00095 236 KLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENN-NIILVIDEVHTLIGAGAAEGAI---DAANILKPAL----ARGE 307 (821)
T ss_pred CeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcC-CeEEEEecHHHHhcCCCCCCcc---cHHHHhHHHH----hCCC
Confidence 778999988776 4788999999999999987654 5899999999998654322111 1122233333 3578
Q ss_pred EEEEEeeCCCC-----CCChHHHhccceEEEecCCCHHHHHHHHHHHHHh--------hCHHHHHHHHHhccCCCH
Q 047219 432 VVVIAATNRKQ-----DLDPALISRFDSMITFGLPDHENRQEIAAQYAKH--------LTKAELAELATATEEMSG 494 (567)
Q Consensus 432 viVIaaTN~~~-----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~--------~~~~~l~~la~~t~g~s~ 494 (567)
+.+|++|+..+ ..+++|.+|| ..+.++.|+.++...|++.+... +.++.+..+...+.+|.+
T Consensus 308 l~~IgaTt~~ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 308 LQCIGATTLDEYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred cEEEEeCCHHHHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 99999998753 5789999999 67899999999999998865432 456667777776666543
No 111
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=6.7e-14 Score=156.26 Aligned_cols=189 Identities=21% Similarity=0.314 Sum_probs=136.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~ 353 (567)
.+.+|++|+|++..++.+++.+.. ...++.+||+||+|||||++|+.+|+.+.+.. ..+
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~--------------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~ 70 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQ--------------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG 70 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 457899999999999999888752 35677899999999999999999999986431 111
Q ss_pred -----------------cCeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 354 -----------------VPLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 354 -----------------~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
.+++.+++.. +..-..++.+.+.+.. .+++.|+||||+|.|...
T Consensus 71 ~pC~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~---------- 134 (559)
T PRK05563 71 EPCNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG---------- 134 (559)
T ss_pred CCCCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH----------
Confidence 1223332210 1123445566555542 334679999999998632
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
.++.|++.++. .+..+++|.+|+.+..+.+.+++|| ..+.|..|+.++....+...++. +..+.+..++...
T Consensus 135 -a~naLLKtLEe--pp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s 210 (559)
T PRK05563 135 -AFNALLKTLEE--PPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAA 210 (559)
T ss_pred -HHHHHHHHhcC--CCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 45678888774 4667888888888899999999999 78999999999999988887764 3556777778776
Q ss_pred cCCCHHHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQQA 504 (567)
Q Consensus 490 ~g~s~~dL~~L~~~a 504 (567)
.| +.++...++..+
T Consensus 211 ~G-~~R~al~~Ldq~ 224 (559)
T PRK05563 211 EG-GMRDALSILDQA 224 (559)
T ss_pred CC-CHHHHHHHHHHH
Confidence 65 555655555544
No 112
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=2.6e-14 Score=155.30 Aligned_cols=169 Identities=17% Similarity=0.245 Sum_probs=111.4
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSF 400 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L 400 (567)
..++++||||+|+|||+|++++++++... +..+++++.+.+...+.......-...|...... ..+|+||||+.+
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~--~dvLiIDDiq~l 214 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRN--VDALFIEDIEVF 214 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeHHHHHHHHHHHHhcchHHHHHHHccc--CCEEEEcchhhh
Confidence 34689999999999999999999988543 5678999988776654332211111223333332 469999999998
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC---CCChHHHhccc--eEEEecCCCHHHHHHHHHHHHH
Q 047219 401 AVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ---DLDPALISRFD--SMITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 401 ~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~---~Ld~aL~sRf~--~~I~i~~P~~~eR~eIL~~~~~ 475 (567)
.++.. ....|+..++.+...+..+|+++++.+. .++++|++||. ..+.+..|+.++|..|++..++
T Consensus 215 ~~k~~---------~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 215 SGKGA---------TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred cCChh---------hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 75421 1122333333222233445555544443 47899999995 6888999999999999999887
Q ss_pred h----hCHHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 476 H----LTKAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 476 ~----~~~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
. ++.+.++.++....+ +.+.|...+...
T Consensus 286 ~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 286 ALSIRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred HcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 5 567778888877654 344444444443
No 113
>PRK04195 replication factor C large subunit; Provisional
Probab=99.59 E-value=5.2e-14 Score=155.09 Aligned_cols=188 Identities=22% Similarity=0.300 Sum_probs=133.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
..+.++++|+|++.+++.+++.+.... ...+++++||+||||||||++|+++|+++ +
T Consensus 8 yrP~~l~dlvg~~~~~~~l~~~l~~~~-----------------~g~~~~~lLL~GppG~GKTtla~ala~el------~ 64 (482)
T PRK04195 8 YRPKTLSDVVGNEKAKEQLREWIESWL-----------------KGKPKKALLLYGPPGVGKTSLAHALANDY------G 64 (482)
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHHh-----------------cCCCCCeEEEECCCCCCHHHHHHHHHHHc------C
Confidence 345689999999999999999886432 13457899999999999999999999999 6
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHHhc----C-CCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCccc
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLANE----L-PNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~----~-a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~ 428 (567)
.+++.+++++.... ..+..+...+.. . .++.+|+|||+|.|....+. ..+..|+..++
T Consensus 65 ~~~ielnasd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~-------~~~~aL~~~l~---- 127 (482)
T PRK04195 65 WEVIELNASDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDR-------GGARAILELIK---- 127 (482)
T ss_pred CCEEEEcccccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccch-------hHHHHHHHHHH----
Confidence 67888887654321 122222222211 1 13579999999999753211 12234445444
Q ss_pred CCcEEEEEeeCCCCCCCh-HHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDP-ALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~-aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
..+..+|+++|.+..+.+ .|++|+ ..+.|+.|+.++...++...+.. +..+.++.++..+.| |++.+++.
T Consensus 128 ~~~~~iIli~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~ 202 (482)
T PRK04195 128 KAKQPIILTANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAIND 202 (482)
T ss_pred cCCCCEEEeccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 234567778888888887 788888 88999999999999999988764 456778888877654 66666665
Q ss_pred HHH
Q 047219 504 AER 506 (567)
Q Consensus 504 a~~ 506 (567)
...
T Consensus 203 Lq~ 205 (482)
T PRK04195 203 LQA 205 (482)
T ss_pred HHH
Confidence 543
No 114
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=4.8e-14 Score=157.72 Aligned_cols=196 Identities=19% Similarity=0.204 Sum_probs=135.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC---
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW--- 351 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~--- 351 (567)
.+.+|++|+|++..++.|++++.. .+.++.+||+||+|||||++|+++|+.+++..-
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~--------------------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~ 70 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQ--------------------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQ 70 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccc
Confidence 347899999999999999987752 456778899999999999999999999865210
Q ss_pred CC---cCeEEe-chhhHHhhh----------hchhHHHHHHHHHHHhcC---CCCcEEEEcCcchhhhhhhhhhHHHHHH
Q 047219 352 QG---VPLMYV-PLEVVMSKY----------YGESERLLGKVFSLANEL---PNGAIIFLDEVDSFAVARDSEMHEATRR 414 (567)
Q Consensus 352 ~~---~~~~~i-~~~~l~s~~----------~G~~~~~l~~~f~~A~~~---a~~~ILfIDEID~L~~~~q~~l~~~~~~ 414 (567)
.+ .+|-.. +|..+.... ....-+.++.+.+.+... +...|+||||+|.|...
T Consensus 71 ~~~~~~pCg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~----------- 139 (618)
T PRK14951 71 GGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT----------- 139 (618)
T ss_pred cCCCCCCCCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------
Confidence 00 112111 111111100 001123455555544322 23579999999999643
Q ss_pred HHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhcc
Q 047219 415 ILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATE 490 (567)
Q Consensus 415 vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~ 490 (567)
..+.|++.++. .+..+++|.+|+.+..+.+.+++|| ..++|..++.++..+.++..+.. +..+.+..++....
T Consensus 140 a~NaLLKtLEE--PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~ 216 (618)
T PRK14951 140 AFNAMLKTLEE--PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAAR 216 (618)
T ss_pred HHHHHHHhccc--CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 34677787774 5667888888888888999999999 89999999999988888877654 45667888888766
Q ss_pred CCCHHHHHHHHHHHH
Q 047219 491 EMSGRDIRDVCQQAE 505 (567)
Q Consensus 491 g~s~~dL~~L~~~a~ 505 (567)
| +.+++.+++..+.
T Consensus 217 G-slR~al~lLdq~i 230 (618)
T PRK14951 217 G-SMRDALSLTDQAI 230 (618)
T ss_pred C-CHHHHHHHHHHHH
Confidence 5 5666666655443
No 115
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.59 E-value=4.3e-14 Score=143.77 Aligned_cols=146 Identities=21% Similarity=0.281 Sum_probs=94.8
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh------hHHhhhhchhHHHH-HH--------------
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE------VVMSKYYGESERLL-GK-------------- 378 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~------~l~s~~~G~~~~~l-~~-------------- 378 (567)
....++||+||||||||++|+++|+.+ +.+++.+++. ++.+.+.+...... ..
T Consensus 19 ~~g~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T TIGR02640 19 KSGYPVHLRGPAGTGKTTLAMHVARKR------DRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQ 92 (262)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccce
Confidence 346789999999999999999999987 5667777553 33333332211111 10
Q ss_pred -----HHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHh---hcCcccCCcEEEEEeeCCCC-----CCC
Q 047219 379 -----VFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQ---IDGFEQDKKVVVIAATNRKQ-----DLD 445 (567)
Q Consensus 379 -----~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~---ld~~~~~~~viVIaaTN~~~-----~Ld 445 (567)
.+..|.. .+++|+||||+.+.++.+..+.+.+++-.-.+... ...+..+.+++||+|+|+.. .++
T Consensus 93 ~~~~g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~ 170 (262)
T TIGR02640 93 NWVDNRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQ 170 (262)
T ss_pred eecCchHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceeccc
Confidence 1111222 35899999999988665554444332200000000 00011335789999999753 579
Q ss_pred hHHHhccceEEEecCCCHHHHHHHHHHHH
Q 047219 446 PALISRFDSMITFGLPDHENRQEIAAQYA 474 (567)
Q Consensus 446 ~aL~sRf~~~I~i~~P~~~eR~eIL~~~~ 474 (567)
++|++|| ..+.++.|+.++..+|+..++
T Consensus 171 ~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 171 DALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred HHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 9999999 899999999999999999875
No 116
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.58 E-value=3.6e-14 Score=165.97 Aligned_cols=187 Identities=21% Similarity=0.275 Sum_probs=137.6
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCC
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQ 352 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~ 352 (567)
-.++.++|+++.++++.+.+. .+...+++|+||||||||+++++++..+... ...
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~---------------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~ 228 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLS---------------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLK 228 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHh---------------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhc
Confidence 357889999999888877654 3455788999999999999999999987432 223
Q ss_pred CcCeEEechhhHH--hhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 353 GVPLMYVPLEVVM--SKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 353 ~~~~~~i~~~~l~--s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
+.+++.++...+. .+|.|+.+..+..+|+.+.....+.||||||||.|.+....... ....+.|...+ ..+
T Consensus 229 ~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~~~Lk~~l----~~g 301 (852)
T TIGR03346 229 NKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA---MDAGNMLKPAL----ARG 301 (852)
T ss_pred CCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch---hHHHHHhchhh----hcC
Confidence 6678888877765 46889999999999998875544689999999999753221111 11223333322 467
Q ss_pred cEEEEEeeCCCC-----CCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh--------CHHHHHHHHHhccCC
Q 047219 431 KVVVIAATNRKQ-----DLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL--------TKAELAELATATEEM 492 (567)
Q Consensus 431 ~viVIaaTN~~~-----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~--------~~~~l~~la~~t~g~ 492 (567)
.+.+|++|+..+ .+|++|.+|| ..+.++.|+.+++..|++.+...+ ....+...+..+.+|
T Consensus 302 ~i~~IgaTt~~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~y 375 (852)
T TIGR03346 302 ELHCIGATTLDEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRY 375 (852)
T ss_pred ceEEEEeCcHHHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccc
Confidence 899999998753 5799999999 678999999999999999876542 344555555555554
No 117
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=7.4e-14 Score=161.06 Aligned_cols=189 Identities=19% Similarity=0.186 Sum_probs=130.8
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC--
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-- 351 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-- 351 (567)
....+|++|+|++.+++.|+.++.. .+.++.+||+||+|||||++|++|++.+.+...
T Consensus 9 yRP~~f~eiiGqe~v~~~L~~~i~~--------------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~ 68 (824)
T PRK07764 9 YRPATFAEVIGQEHVTEPLSTALDS--------------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPT 68 (824)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHh--------------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCC
Confidence 3457899999999999999888752 455677999999999999999999999965310
Q ss_pred ------------------CCcCeEEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhhhHH
Q 047219 352 ------------------QGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSEMHE 410 (567)
Q Consensus 352 ------------------~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~l~~ 410 (567)
....++.++.... ..-+.++.+.+.+. ......|+||||+|.|...
T Consensus 69 ~~pCg~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~------- 135 (824)
T PRK07764 69 STPCGECDSCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ------- 135 (824)
T ss_pred CCCCcccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH-------
Confidence 0112233322110 01123333333222 2234689999999999633
Q ss_pred HHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHH
Q 047219 411 ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELA 486 (567)
Q Consensus 411 ~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la 486 (567)
..+.||+.++. .+..++||++|+..+.|.+.|++|| ..++|..++.++..+.|...+++ +....+..++
T Consensus 136 ----a~NaLLK~LEE--pP~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa 208 (824)
T PRK07764 136 ----GFNALLKIVEE--PPEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVI 208 (824)
T ss_pred ----HHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45678888874 4568888888888888999999999 89999999999998888887754 3445566666
Q ss_pred HhccCCCHHHHHHHHHH
Q 047219 487 TATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 487 ~~t~g~s~~dL~~L~~~ 503 (567)
....| +.+++..+++.
T Consensus 209 ~~sgG-dlR~Al~eLEK 224 (824)
T PRK07764 209 RAGGG-SVRDSLSVLDQ 224 (824)
T ss_pred HHcCC-CHHHHHHHHHH
Confidence 66544 44444444433
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.2e-13 Score=154.05 Aligned_cols=188 Identities=20% Similarity=0.241 Sum_probs=132.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CC-
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQ- 352 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~- 352 (567)
.+.+|++|+|++.+++.|+.++.. .+.++.+||+||+|||||++|+++|+.+.+.. ..
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~--------------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~ 67 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDA--------------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA 67 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC
Confidence 447899999999999999988752 35666789999999999999999999986421 10
Q ss_pred ------------------CcCeEEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhhhHHH
Q 047219 353 ------------------GVPLMYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSEMHEA 411 (567)
Q Consensus 353 ------------------~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~l~~~ 411 (567)
...++.+++.... .-+.++.+.+.+. ..++..|+||||+|.|...
T Consensus 68 ~pCg~C~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-------- 133 (584)
T PRK14952 68 TPCGVCESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-------- 133 (584)
T ss_pred CcccccHHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH--------
Confidence 1122333321100 1223344433332 2244679999999999633
Q ss_pred HHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHH
Q 047219 412 TRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELAT 487 (567)
Q Consensus 412 ~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~ 487 (567)
.++.|++.++. .+..+++|++|+.+..+.+.+++|| ..++|..++.++..+.+...+.. +..+.+..++.
T Consensus 134 ---A~NALLK~LEE--pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~ 207 (584)
T PRK14952 134 ---GFNALLKIVEE--PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIR 207 (584)
T ss_pred ---HHHHHHHHHhc--CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45678888874 5678899988888899999999998 89999999999988888877764 44556666666
Q ss_pred hccCCCHHHHHHHHHH
Q 047219 488 ATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 488 ~t~g~s~~dL~~L~~~ 503 (567)
...| +.+++.+++..
T Consensus 208 ~s~G-dlR~aln~Ldq 222 (584)
T PRK14952 208 AGGG-SPRDTLSVLDQ 222 (584)
T ss_pred HcCC-CHHHHHHHHHH
Confidence 5443 45555454444
No 119
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.58 E-value=1.5e-13 Score=137.52 Aligned_cols=186 Identities=13% Similarity=0.158 Sum_probs=118.4
Q ss_pred CCCCCCccccc-C-cHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC
Q 047219 273 SKSEISWENIA-G-YDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP 350 (567)
Q Consensus 273 ~~~~~~~~dIi-G-~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~ 350 (567)
-.+..+|++.+ | ...+...++.... .....+++||||||||||+|++++++++...
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~~l~~~~~---------------------~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~- 72 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLAALQNALR---------------------QEHSGYIYLWSREGAGRSHLLHAACAELSQR- 72 (235)
T ss_pred CCCcCCccccccCccHHHHHHHHHHHh---------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-
Confidence 44567888877 4 4444554444332 2234589999999999999999999987543
Q ss_pred CCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 351 WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 351 ~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
+..+.+++.+...... ..+++.... ..+|+||||+.+..+.+. ...|...++.....+
T Consensus 73 --~~~v~y~~~~~~~~~~--------~~~~~~~~~---~dlliiDdi~~~~~~~~~---------~~~lf~l~n~~~e~g 130 (235)
T PRK08084 73 --GRAVGYVPLDKRAWFV--------PEVLEGMEQ---LSLVCIDNIECIAGDELW---------EMAIFDLYNRILESG 130 (235)
T ss_pred --CCeEEEEEHHHHhhhh--------HHHHHHhhh---CCEEEEeChhhhcCCHHH---------HHHHHHHHHHHHHcC
Confidence 4556777776543211 112222221 258999999998755221 112222222222234
Q ss_pred cE-EEEEeeCCCCC---CChHHHhccc--eEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHH
Q 047219 431 KV-VVIAATNRKQD---LDPALISRFD--SMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDV 500 (567)
Q Consensus 431 ~v-iVIaaTN~~~~---Ld~aL~sRf~--~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L 500 (567)
+. +++++++++.. +.++|++||. .++.+..|+.+++.++++..+.. ++++.++.++....+ +.+.+..+
T Consensus 131 ~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~ 209 (235)
T PRK08084 131 RTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMT 209 (235)
T ss_pred CCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHH
Confidence 43 44445556555 6799999995 58999999999999999886653 567788888887665 45555555
Q ss_pred HHH
Q 047219 501 CQQ 503 (567)
Q Consensus 501 ~~~ 503 (567)
++.
T Consensus 210 l~~ 212 (235)
T PRK08084 210 LDQ 212 (235)
T ss_pred HHH
Confidence 554
No 120
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.57 E-value=2.8e-13 Score=134.23 Aligned_cols=192 Identities=24% Similarity=0.388 Sum_probs=141.2
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
....+.+++|+|.+.+++.|.+....++ ...+.+++||||++|||||++++++.+++...
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl-----------------~G~pannvLL~G~rGtGKSSlVkall~~y~~~--- 79 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFL-----------------QGLPANNVLLWGARGTGKSSLVKALLNEYADQ--- 79 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHH-----------------cCCCCcceEEecCCCCCHHHHHHHHHHHHhhc---
Confidence 4567899999999999999988776542 25688999999999999999999999998665
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc--ccCC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF--EQDK 430 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~--~~~~ 430 (567)
++.++.++...+.. +..+++.........|||+|++.. . ..+. -...|...+++- ..+.
T Consensus 80 GLRlIev~k~~L~~---------l~~l~~~l~~~~~kFIlf~DDLsF-e--~~d~-------~yk~LKs~LeGgle~~P~ 140 (249)
T PF05673_consen 80 GLRLIEVSKEDLGD---------LPELLDLLRDRPYKFILFCDDLSF-E--EGDT-------EYKALKSVLEGGLEARPD 140 (249)
T ss_pred CceEEEECHHHhcc---------HHHHHHHHhcCCCCEEEEecCCCC-C--CCcH-------HHHHHHHHhcCccccCCC
Confidence 67889988877654 445566655555579999999752 1 1111 123444455553 4578
Q ss_pred cEEEEEeeCCCC---------------CCCh--------HHHhccceEEEecCCCHHHHHHHHHHHHHhh----CHH---
Q 047219 431 KVVVIAATNRKQ---------------DLDP--------ALISRFDSMITFGLPDHENRQEIAAQYAKHL----TKA--- 480 (567)
Q Consensus 431 ~viVIaaTN~~~---------------~Ld~--------aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~----~~~--- 480 (567)
||++.+|+|+-. .+.+ +|..||+..+.|..|+.++..+|++.++..+ ..+
T Consensus 141 NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~ 220 (249)
T PF05673_consen 141 NVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELR 220 (249)
T ss_pred cEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 999999999821 2221 3556999999999999999999999999753 222
Q ss_pred -HHHHHHHhccCCCHHHHHHHHHH
Q 047219 481 -ELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 481 -~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
...+.+..-.|.||+--++.+..
T Consensus 221 ~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 221 QEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34556666677888877777664
No 121
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.57 E-value=5.1e-14 Score=151.37 Aligned_cols=220 Identities=20% Similarity=0.340 Sum_probs=141.0
Q ss_pred cccCcHHHHHHHHHHHHHhccChhhHHhhhhcccc-cccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 281 NIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRC-KFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 281 dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~-~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
.|+|++++++.+...+....+. +...... ........++||+||||||||++|+++|+.+ +.+|+.+
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r------~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l------~~pf~~i 139 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKR------LRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL------DVPFAIA 139 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHh------hhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh------CCCceec
Confidence 4899999999998777543222 2111000 0002345789999999999999999999998 7788988
Q ss_pred chhhHHh-hhhchhH-HHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhh--hHHH-HHHHHHHHHHhhcCcc----
Q 047219 360 PLEVVMS-KYYGESE-RLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSE--MHEA-TRRILSVLLRQIDGFE---- 427 (567)
Q Consensus 360 ~~~~l~s-~~~G~~~-~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~--l~~~-~~~vl~~LL~~ld~~~---- 427 (567)
++..+.. .|+|+.. ..+..++..+. ..+.++||||||||.+..+.... ..++ ...+++.||+.|++..
T Consensus 140 d~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~ 219 (412)
T PRK05342 140 DATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVP 219 (412)
T ss_pred chhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeC
Confidence 8887653 5777643 33444443221 12347999999999998663211 0011 1235567777776431
Q ss_pred -------cCCcEEEEEeeCCCC----------------------------------------------------CCChHH
Q 047219 428 -------QDKKVVVIAATNRKQ----------------------------------------------------DLDPAL 448 (567)
Q Consensus 428 -------~~~~viVIaaTN~~~----------------------------------------------------~Ld~aL 448 (567)
...++++|.|+|... .|.|+|
T Consensus 220 ~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf 299 (412)
T PRK05342 220 PQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF 299 (412)
T ss_pred CCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH
Confidence 123456666665400 157889
Q ss_pred HhccceEEEecCCCHHHHHHHHHH----HHHh-------------hCHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHHH
Q 047219 449 ISRFDSMITFGLPDHENRQEIAAQ----YAKH-------------LTKAELAELATA--TEEMSGRDIRDVCQQAERSWA 509 (567)
Q Consensus 449 ~sRf~~~I~i~~P~~~eR~eIL~~----~~~~-------------~~~~~l~~la~~--t~g~s~~dL~~L~~~a~~~a~ 509 (567)
+.|++.++.|...+.++...|+.. +++. +.++.++.+++. ...+-.+.|+.+++......+
T Consensus 300 lgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~ 379 (412)
T PRK05342 300 IGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVM 379 (412)
T ss_pred hCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHH
Confidence 999999999999999999999973 2221 344556666663 445556777777776665555
Q ss_pred HHH
Q 047219 510 SKI 512 (567)
Q Consensus 510 ~r~ 512 (567)
..+
T Consensus 380 ~~~ 382 (412)
T PRK05342 380 FEL 382 (412)
T ss_pred Hhc
Confidence 443
No 122
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.57 E-value=4.2e-14 Score=156.78 Aligned_cols=170 Identities=18% Similarity=0.284 Sum_probs=116.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFA 401 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~ 401 (567)
.++++|||++|||||+|+++|++++... ..+..++++++.++...+...........|...... ..+|+||||+.+.
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~-~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~--~DLLlIDDIq~l~ 390 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRL-YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYRE--MDILLVDDIQFLE 390 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhc--CCEEEEehhcccc
Confidence 3569999999999999999999987431 125678999999888776544333222234433332 4799999999997
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC-CC---CCChHHHhccce--EEEecCCCHHHHHHHHHHHHH
Q 047219 402 VARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR-KQ---DLDPALISRFDS--MITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 402 ~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~-~~---~Ld~aL~sRf~~--~I~i~~P~~~eR~eIL~~~~~ 475 (567)
.+... ...|+..++.+...+..+|| |+|. +. .++++|++||.. .+.|..|+.+.|.+||+.++.
T Consensus 391 gke~t---------qeeLF~l~N~l~e~gk~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 391 DKEST---------QEEFFHTFNTLHNANKQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred CCHHH---------HHHHHHHHHHHHhcCCCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 65321 12333444433333344444 5554 33 578999999944 779999999999999999887
Q ss_pred h----hCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 476 H----LTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 476 ~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
. ++.+.++.|+....+ +.++|..++....
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~ 493 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRVT 493 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 5 467788888887654 5666666666543
No 123
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=1.6e-13 Score=150.98 Aligned_cols=190 Identities=18% Similarity=0.204 Sum_probs=135.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC--
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ-- 352 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~-- 352 (567)
.+.+|++|+|++.+++.|...+.. ...++.+|||||+|+|||++|+++++.+.+....
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~--------------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~ 68 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDN--------------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS 68 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc--------------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC
Confidence 447899999999999999888752 4567778999999999999999999998532110
Q ss_pred ----------------CcCeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 353 ----------------GVPLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 353 ----------------~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
...++.+++..- ..-+.++.+...... .++..|++|||+|.|...
T Consensus 69 ~pC~~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~---------- 132 (535)
T PRK08451 69 TPCDTCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE---------- 132 (535)
T ss_pred CCCcccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH----------
Confidence 112222322110 012345555444321 234579999999999643
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
.++.|++.++. .+..+++|.+|+.+..+.+.+++|| ..++|..++.++....+...+.. +..+.+..++...
T Consensus 133 -A~NALLK~LEE--pp~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s 208 (535)
T PRK08451 133 -AFNALLKTLEE--PPSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSG 208 (535)
T ss_pred -HHHHHHHHHhh--cCCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 44677777774 4567888888888899999999998 89999999999888888877764 4567788888876
Q ss_pred cCCCHHHHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQQAE 505 (567)
Q Consensus 490 ~g~s~~dL~~L~~~a~ 505 (567)
.| +.+++..++..+.
T Consensus 209 ~G-dlR~alnlLdqai 223 (535)
T PRK08451 209 NG-SLRDTLTLLDQAI 223 (535)
T ss_pred CC-cHHHHHHHHHHHH
Confidence 55 5666666665544
No 124
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.6e-13 Score=151.72 Aligned_cols=188 Identities=17% Similarity=0.206 Sum_probs=130.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~ 353 (567)
.+.+|++|+|++.+++.|...+.. .+.++.+||+||+|||||++|+.+|+.+.+.. ...
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~--------------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~ 70 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALET--------------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTA 70 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 447899999999999999887752 35567799999999999999999999886421 111
Q ss_pred c-----------------CeEEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 354 V-----------------PLMYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 354 ~-----------------~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
- .++.++... ..| -..++.+.+.+. ..+...|+||||+|.|...
T Consensus 71 ~pCg~C~sC~~i~~~~~~dlieidaas----~~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~---------- 134 (546)
T PRK14957 71 EPCNKCENCVAINNNSFIDLIEIDAAS----RTG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ---------- 134 (546)
T ss_pred CCCcccHHHHHHhcCCCCceEEeeccc----ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccHH----------
Confidence 1 222222211 011 122334444333 2234679999999998643
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
.++.|++.++. .+..+++|++|+.+..+.+.+++|| ..++|..++.++....+...+.. +....+..++..+
T Consensus 135 -a~naLLK~LEe--pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s 210 (546)
T PRK14957 135 -SFNALLKTLEE--PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA 210 (546)
T ss_pred -HHHHHHHHHhc--CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 44677777774 4567888888887888888999999 99999999999988888876654 4566677777776
Q ss_pred cCCCHHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQQ 503 (567)
Q Consensus 490 ~g~s~~dL~~L~~~ 503 (567)
.| +.+++-+++..
T Consensus 211 ~G-dlR~alnlLek 223 (546)
T PRK14957 211 KG-SLRDALSLLDQ 223 (546)
T ss_pred CC-CHHHHHHHHHH
Confidence 54 44444444443
No 125
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.56 E-value=1.8e-13 Score=144.55 Aligned_cols=189 Identities=21% Similarity=0.293 Sum_probs=132.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC--
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-- 351 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-- 351 (567)
..+.+|++++|++.+++.+.+.+.. ...++.+||+||||+|||++|+++++.+.....
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~--------------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~ 67 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKN--------------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPD 67 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 3457899999999999999887742 356678999999999999999999999853210
Q ss_pred ----------------CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcC---CCCcEEEEcCcchhhhhhhhhhHHHH
Q 047219 352 ----------------QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANEL---PNGAIIFLDEVDSFAVARDSEMHEAT 412 (567)
Q Consensus 352 ----------------~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~---a~~~ILfIDEID~L~~~~q~~l~~~~ 412 (567)
...+++.++... ......++.+++.+... ++..+++|||+|.+...
T Consensus 68 ~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~--------- 132 (355)
T TIGR02397 68 GEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS--------- 132 (355)
T ss_pred CCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH---------
Confidence 012233333321 01123355566655432 33569999999998532
Q ss_pred HHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHh
Q 047219 413 RRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATA 488 (567)
Q Consensus 413 ~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~ 488 (567)
..+.|+..++. .+.++++|++|+.++.+.+.+++|| ..++|..|+.++..+++...++. +..+.+..++..
T Consensus 133 --~~~~Ll~~le~--~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 133 --AFNALLKTLEE--PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARA 207 (355)
T ss_pred --HHHHHHHHHhC--CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34567777764 4567888888888888899999999 78999999999999999987764 455677777776
Q ss_pred ccCCCHHHHHHHHHH
Q 047219 489 TEEMSGRDIRDVCQQ 503 (567)
Q Consensus 489 t~g~s~~dL~~L~~~ 503 (567)
+.| +.+.+.+.+..
T Consensus 208 ~~g-~~~~a~~~lek 221 (355)
T TIGR02397 208 ADG-SLRDALSLLDQ 221 (355)
T ss_pred cCC-ChHHHHHHHHH
Confidence 654 44444444433
No 126
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.56 E-value=3.8e-14 Score=150.23 Aligned_cols=179 Identities=24% Similarity=0.412 Sum_probs=125.2
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
+.|+|++++++.+..++....++..+...+. ....|+++||+||||||||++|+++|+.+ +.+|+.+
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~-------~e~~p~~ILLiGppG~GKT~lAraLA~~l------~~~fi~v 78 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELK-------DEVTPKNILMIGPTGVGKTEIARRLAKLA------NAPFIKV 78 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccc-------cccCCceEEEECCCCCCHHHHHHHHHHHh------CCeEEEe
Confidence 3589999999999887765422222111111 13457899999999999999999999999 6677777
Q ss_pred chhhHHh-hhhc-hhHHHHHHHHHHH------------------------------------------------------
Q 047219 360 PLEVVMS-KYYG-ESERLLGKVFSLA------------------------------------------------------ 383 (567)
Q Consensus 360 ~~~~l~s-~~~G-~~~~~l~~~f~~A------------------------------------------------------ 383 (567)
++..+.. .|+| +.+..++.+|..|
T Consensus 79 dat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~ 158 (441)
T TIGR00390 79 EATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRK 158 (441)
T ss_pred ecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHH
Confidence 7665542 4555 3334444443333
Q ss_pred --------------------------------------------------------------------------------
Q 047219 384 -------------------------------------------------------------------------------- 383 (567)
Q Consensus 384 -------------------------------------------------------------------------------- 383 (567)
T Consensus 159 ~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~ 238 (441)
T TIGR00390 159 KLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIK 238 (441)
T ss_pred HHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHH
Confidence
Q ss_pred ---h-cCCCCcEEEEcCcchhhhhhhhhhHHHH-HHHHHHHHHhhcCcc--------cCCcEEEEEeeC----CCCCCCh
Q 047219 384 ---N-ELPNGAIIFLDEVDSFAVARDSEMHEAT-RRILSVLLRQIDGFE--------QDKKVVVIAATN----RKQDLDP 446 (567)
Q Consensus 384 ---~-~~a~~~ILfIDEID~L~~~~q~~l~~~~-~~vl~~LL~~ld~~~--------~~~~viVIaaTN----~~~~Ld~ 446 (567)
. .....+|+||||||+++.+......++. ..++..||..+++.. ...++.+||+.- .|.+|-|
T Consensus 239 ~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIP 318 (441)
T TIGR00390 239 QEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIP 318 (441)
T ss_pred HHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccH
Confidence 0 0123589999999999876532222222 336678888888742 235788887763 4777999
Q ss_pred HHHhccceEEEecCCCHHHHHHHHH
Q 047219 447 ALISRFDSMITFGLPDHENRQEIAA 471 (567)
Q Consensus 447 aL~sRf~~~I~i~~P~~~eR~eIL~ 471 (567)
+|..||+..+.+..++.++...||.
T Consensus 319 El~GR~Pi~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 319 ELQGRFPIRVELQALTTDDFERILT 343 (441)
T ss_pred HHhCccceEEECCCCCHHHHHHHhc
Confidence 9999999999999999999999884
No 127
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.56 E-value=3.7e-14 Score=150.40 Aligned_cols=179 Identities=25% Similarity=0.416 Sum_probs=126.5
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
..|+|++++++.+..++....++..+...+ .....|.++||+||||||||++|+++|+.+ +.+|+.+
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~-------~~e~~~~~ILliGp~G~GKT~LAr~LAk~l------~~~fi~v 81 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEEL-------RDEVTPKNILMIGPTGVGKTEIARRLAKLA------NAPFIKV 81 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCccc-------ccccCCceEEEECCCCCCHHHHHHHHHHHh------CChheee
Confidence 349999999999988875432221111100 012346899999999999999999999999 7778888
Q ss_pred chhhHHh-hhhc-hhHHHHHHHHHHH------------------------------------------------------
Q 047219 360 PLEVVMS-KYYG-ESERLLGKVFSLA------------------------------------------------------ 383 (567)
Q Consensus 360 ~~~~l~s-~~~G-~~~~~l~~~f~~A------------------------------------------------------ 383 (567)
++..+.. .|.| ..+..++.+|..|
T Consensus 82 D~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~ 161 (443)
T PRK05201 82 EATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRK 161 (443)
T ss_pred cchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHH
Confidence 8776664 5666 3344444444444
Q ss_pred --------------------------------------------------------------------------------
Q 047219 384 -------------------------------------------------------------------------------- 383 (567)
Q Consensus 384 -------------------------------------------------------------------------------- 383 (567)
T Consensus 162 ~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~ 241 (443)
T PRK05201 162 KLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQ 241 (443)
T ss_pred HHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHH
Confidence
Q ss_pred --hc-CCCCcEEEEcCcchhhhhhhhhhHHHH-HHHHHHHHHhhcCcc--------cCCcEEEEEee----CCCCCCChH
Q 047219 384 --NE-LPNGAIIFLDEVDSFAVARDSEMHEAT-RRILSVLLRQIDGFE--------QDKKVVVIAAT----NRKQDLDPA 447 (567)
Q Consensus 384 --~~-~a~~~ILfIDEID~L~~~~q~~l~~~~-~~vl~~LL~~ld~~~--------~~~~viVIaaT----N~~~~Ld~a 447 (567)
.. ....||+||||||+++.+.+....++. +.++..||..+++.. ...++.+||+. ..+.+|-|+
T Consensus 242 ~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPE 321 (443)
T PRK05201 242 EAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPE 321 (443)
T ss_pred HHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHH
Confidence 01 013589999999999876532222222 336678888888742 23578888776 346778999
Q ss_pred HHhccceEEEecCCCHHHHHHHHH
Q 047219 448 LISRFDSMITFGLPDHENRQEIAA 471 (567)
Q Consensus 448 L~sRf~~~I~i~~P~~~eR~eIL~ 471 (567)
|..||+..+.+..++.++...||.
T Consensus 322 l~GR~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 322 LQGRFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred HhCccceEEECCCCCHHHHHHHhc
Confidence 999999999999999999999984
No 128
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.56 E-value=2.5e-13 Score=134.82 Aligned_cols=183 Identities=11% Similarity=0.132 Sum_probs=120.5
Q ss_pred CCCCCCccccc--CcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC
Q 047219 273 SKSEISWENIA--GYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP 350 (567)
Q Consensus 273 ~~~~~~~~dIi--G~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~ 350 (567)
..+..+|++.+ +.+.++..+++... +.....+++|+||+|||||++|+++++++...
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~--------------------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~- 69 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAA--------------------GPVADRFFYLWGEAGSGRSHLLQALVADASYG- 69 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHh--------------------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-
Confidence 34557889976 33445555544332 02456789999999999999999999987433
Q ss_pred CCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 351 WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 351 ~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
+..+.++++..+.... . ....+.+|+|||+|.+....+. .|+..++.....+
T Consensus 70 --~~~~~~i~~~~~~~~~------------~---~~~~~~~liiDdi~~l~~~~~~-----------~L~~~~~~~~~~~ 121 (227)
T PRK08903 70 --GRNARYLDAASPLLAF------------D---FDPEAELYAVDDVERLDDAQQI-----------ALFNLFNRVRAHG 121 (227)
T ss_pred --CCcEEEEehHHhHHHH------------h---hcccCCEEEEeChhhcCchHHH-----------HHHHHHHHHHHcC
Confidence 5578888887654321 1 1112579999999998644322 2233333222334
Q ss_pred cEEEEEeeCC-C--CCCChHHHhcc--ceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHH
Q 047219 431 KVVVIAATNR-K--QDLDPALISRF--DSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVC 501 (567)
Q Consensus 431 ~viVIaaTN~-~--~~Ld~aL~sRf--~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~ 501 (567)
..++|.+++. + ..+.++|++|| ...+++++|+.+++..++..++.+ +..+.++.++.. +.-+.+++..++
T Consensus 122 ~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~-~~gn~~~l~~~l 200 (227)
T PRK08903 122 QGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTH-FRRDMPSLMALL 200 (227)
T ss_pred CcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHH
Confidence 4444445443 2 24679999998 468899999998888888876654 567778888884 555778887777
Q ss_pred HHHH
Q 047219 502 QQAE 505 (567)
Q Consensus 502 ~~a~ 505 (567)
+...
T Consensus 201 ~~l~ 204 (227)
T PRK08903 201 DALD 204 (227)
T ss_pred HHHH
Confidence 7644
No 129
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1e-13 Score=155.45 Aligned_cols=187 Identities=20% Similarity=0.248 Sum_probs=133.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC-C-
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-Q- 352 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-~- 352 (567)
.+.+|++|+|++.+++.|.+.+.. ...++.+||+||+|||||++|+++++.+.+... .
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~--------------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~ 70 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDT--------------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA 70 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC
Confidence 447899999999999999988752 356778899999999999999999999864311 1
Q ss_pred ----------------CcCeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 353 ----------------GVPLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 353 ----------------~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
..+++.+++.. ...-+.++.+.+.+.. .++..|+||||+|.|...
T Consensus 71 ~~c~~c~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~---------- 134 (576)
T PRK14965 71 EPCNVCPPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN---------- 134 (576)
T ss_pred CCCCccHHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH----------
Confidence 11223332211 0112345555554432 234579999999998633
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
..+.|++.++. .+.++++|.+|+.+..+.+.+++|| ..++|..++.++....+...++. +..+.+..++...
T Consensus 135 -a~naLLk~LEe--pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a 210 (576)
T PRK14965 135 -AFNALLKTLEE--PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKG 210 (576)
T ss_pred -HHHHHHHHHHc--CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 34677888873 5678889989998999999999999 89999999998888877776654 4566777777776
Q ss_pred cCCCHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQ 502 (567)
Q Consensus 490 ~g~s~~dL~~L~~ 502 (567)
.| +.+++..++.
T Consensus 211 ~G-~lr~al~~Ld 222 (576)
T PRK14965 211 DG-SMRDSLSTLD 222 (576)
T ss_pred CC-CHHHHHHHHH
Confidence 65 4444444443
No 130
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.1e-13 Score=153.44 Aligned_cols=196 Identities=19% Similarity=0.205 Sum_probs=135.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~ 353 (567)
.+.+|++|+|++.+++.+...+.. .+.++.+||+||||||||++|+++++.+.+.. ...
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~--------------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~ 70 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQ--------------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTA 70 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHc--------------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 346899999999999999887752 35667789999999999999999999996531 111
Q ss_pred cCeEEec-hhhHHhhh----------hchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHH
Q 047219 354 VPLMYVP-LEVVMSKY----------YGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVL 419 (567)
Q Consensus 354 ~~~~~i~-~~~l~s~~----------~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~L 419 (567)
.+|...+ |..+.... .......++.+.+.+.. .++..|+||||+|.|... ..+.|
T Consensus 71 ~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~-----------a~naL 139 (527)
T PRK14969 71 TPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS-----------AFNAM 139 (527)
T ss_pred CCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH-----------HHHHH
Confidence 2222211 11111000 01122345566555542 233579999999998632 44678
Q ss_pred HHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHH
Q 047219 420 LRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGR 495 (567)
Q Consensus 420 L~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~ 495 (567)
++.++. .+..+++|++|+.+..+.+.+++|| ..++|..++.++....+...+.. +....+..++..+.| +.+
T Consensus 140 LK~LEe--pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr 215 (527)
T PRK14969 140 LKTLEE--PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMR 215 (527)
T ss_pred HHHHhC--CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 888874 4578888888888888888999999 89999999999988888776653 355667777777654 556
Q ss_pred HHHHHHHHHH
Q 047219 496 DIRDVCQQAE 505 (567)
Q Consensus 496 dL~~L~~~a~ 505 (567)
+..+++..+.
T Consensus 216 ~al~lldqai 225 (527)
T PRK14969 216 DALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 131
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.3e-13 Score=152.47 Aligned_cols=197 Identities=38% Similarity=0.569 Sum_probs=176.1
Q ss_pred hccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHH
Q 047219 299 SLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGK 378 (567)
Q Consensus 299 ~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~ 378 (567)
++.+++.|+.++ ..++++++++||||||||+++++++++ . ... ..+++....++++|+++..++.
T Consensus 3 ~~~~~~~~~~~~--------~~~~~~v~~~g~~~~~~t~~~~~~a~~-~-----~~~-~~~~~~~~~~~~~~~~~~~~~~ 67 (494)
T COG0464 3 PLKEPELFKKLG--------IEPPKGVLLHGPPGTGKTLLARALANE-G-----AEF-LSINGPEILSKYVGESELRLRE 67 (494)
T ss_pred CccCHHHHHHhC--------CCCCCCceeeCCCCCchhHHHHHHHhc-c-----Ccc-cccCcchhhhhhhhHHHHHHHH
Confidence 466788888776 889999999999999999999999998 2 334 7888999999999999999999
Q ss_pred HHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHh--ccceEE
Q 047219 379 VFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALIS--RFDSMI 456 (567)
Q Consensus 379 ~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I 456 (567)
.|..+....+ +++++||+|.+.+.+.........+++.+++..+++.. ...+.+++.+|.+..+++++++ ||+..+
T Consensus 68 ~~~~a~~~~~-~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~v~~~~~~~~~~~~~~a~~~~~~~~~~~ 145 (494)
T COG0464 68 LFEEAEKLAP-SIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQVIVIGATNRPDGLDPAKRRPGRFDREI 145 (494)
T ss_pred HHHHHHHhCC-CeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCceEEEeecCCccccChhHhCccccceee
Confidence 9999999886 99999999999999888666677889999999999988 5558889999999999999998 999999
Q ss_pred EecCCCHHHHHHHHHHHHHhhCHH---HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Q 047219 457 TFGLPDHENRQEIAAQYAKHLTKA---ELAELATATEEMSGRDIRDVCQQAERSWASKI 512 (567)
Q Consensus 457 ~i~~P~~~eR~eIL~~~~~~~~~~---~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r~ 512 (567)
.+..|+...+.+++..+...+... ....++..+.|+.++++..++.++...+..+.
T Consensus 146 ~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~ 204 (494)
T COG0464 146 EVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRA 204 (494)
T ss_pred ecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999988775443 78899999999999999999999998888886
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.55 E-value=9.3e-14 Score=161.73 Aligned_cols=237 Identities=19% Similarity=0.227 Sum_probs=152.4
Q ss_pred CCHHHHHHHHHHHhhhcccccccCccccccCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCC
Q 047219 243 LTSEELDALVSVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRP 322 (567)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p 322 (567)
++..++..+++.++..++.....++..........--+.|+|++++++.+.+.+...... + .....|
T Consensus 529 v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~g------l-------~~~~~p 595 (852)
T TIGR03345 529 VDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAG------L-------EDPRKP 595 (852)
T ss_pred ecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcC------C-------CCCCCC
Confidence 567778888888887766443333322222222334467999999999999988754111 0 002234
Q ss_pred c-eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhh------------hhchhHHHHHHHHHHHhcCCCC
Q 047219 323 R-AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSK------------YYGESERLLGKVFSLANELPNG 389 (567)
Q Consensus 323 ~-~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~------------~~G~~~~~l~~~f~~A~~~a~~ 389 (567)
. .+||+||||||||.+|+++|..+... ...++.++++++... |+|+.+. ..+..+....|.
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~~---~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~---g~L~~~v~~~p~ 669 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYGG---EQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEG---GVLTEAVRRKPY 669 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhCC---CcceEEEeHHHhhhhhhhccccCCCCCccccccc---chHHHHHHhCCC
Confidence 4 48999999999999999999998543 346788888776543 3333221 123333344568
Q ss_pred cEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc---------cCCcEEEEEeeCC-----------C--------
Q 047219 390 AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE---------QDKKVVVIAATNR-----------K-------- 441 (567)
Q Consensus 390 ~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~---------~~~~viVIaaTN~-----------~-------- 441 (567)
+||+||||+++.+. +.+.|++.++... .-.+++||+|||. .
T Consensus 670 svvllDEieka~~~-----------v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~ 738 (852)
T TIGR03345 670 SVVLLDEVEKAHPD-----------VLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEA 738 (852)
T ss_pred cEEEEechhhcCHH-----------HHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHH
Confidence 99999999987644 3344555554321 1257899999985 0
Q ss_pred ----------CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh--------------CHHHHHHHHHhccC--CCHH
Q 047219 442 ----------QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL--------------TKAELAELATATEE--MSGR 495 (567)
Q Consensus 442 ----------~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~--------------~~~~l~~la~~t~g--~s~~ 495 (567)
..|.|+|++|++ ++.|..++.++...|+...+..+ .++..+.++....+ +-.+
T Consensus 739 ~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR 817 (852)
T TIGR03345 739 LLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGAR 817 (852)
T ss_pred HHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChH
Confidence 127889999995 89999999999999998766532 23345555554432 4466
Q ss_pred HHHHHHHHHHHHHHH
Q 047219 496 DIRDVCQQAERSWAS 510 (567)
Q Consensus 496 dL~~L~~~a~~~a~~ 510 (567)
.|+.+++......+.
T Consensus 818 ~L~r~Ie~~i~~~la 832 (852)
T TIGR03345 818 NIDAILNQTLLPELS 832 (852)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666654444433
No 133
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.55 E-value=4.5e-13 Score=142.06 Aligned_cols=208 Identities=25% Similarity=0.318 Sum_probs=132.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC---C
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP---W 351 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~---~ 351 (567)
+.+..+++.|.+++++.|...+...+. ...+.+++|+||||||||++++++++++.... -
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~-----------------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~ 72 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILR-----------------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRD 72 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHc-----------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccC
Confidence 344556899999999999988864321 24567899999999999999999998763210 0
Q ss_pred CCcCeEEechhhHH----------hhhh--ch--------hHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHH
Q 047219 352 QGVPLMYVPLEVVM----------SKYY--GE--------SERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEA 411 (567)
Q Consensus 352 ~~~~~~~i~~~~l~----------s~~~--G~--------~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~ 411 (567)
..+.+++++|.... ..+. |. ..+.+..+++......++.+|+|||+|.|....+
T Consensus 73 ~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~------ 146 (365)
T TIGR02928 73 VRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD------ 146 (365)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc------
Confidence 01456777764321 1111 11 1223344555544444457999999999963211
Q ss_pred HHHHHHHHHHhhcCcc-cCCcEEEEEeeCCCC---CCChHHHhccc-eEEEecCCCHHHHHHHHHHHHHh------hCHH
Q 047219 412 TRRILSVLLRQIDGFE-QDKKVVVIAATNRKQ---DLDPALISRFD-SMITFGLPDHENRQEIAAQYAKH------LTKA 480 (567)
Q Consensus 412 ~~~vl~~LL~~ld~~~-~~~~viVIaaTN~~~---~Ld~aL~sRf~-~~I~i~~P~~~eR~eIL~~~~~~------~~~~ 480 (567)
.++..|+...+... ...++.+|+++|.++ .+++.+.+||. ..++|++++.++..+|++..+.. +.++
T Consensus 147 --~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~ 224 (365)
T TIGR02928 147 --DLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDG 224 (365)
T ss_pred --HHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChh
Confidence 23345555422111 236789999998865 58889999985 57999999999999999998762 3344
Q ss_pred HHHHHHH---hccCCCHHHHHHHHHHHHHHH
Q 047219 481 ELAELAT---ATEEMSGRDIRDVCQQAERSW 508 (567)
Q Consensus 481 ~l~~la~---~t~g~s~~dL~~L~~~a~~~a 508 (567)
.++.++. .+.| ..+....+|..|+..+
T Consensus 225 ~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a 254 (365)
T TIGR02928 225 VIPLCAALAAQEHG-DARKAIDLLRVAGEIA 254 (365)
T ss_pred HHHHHHHHHHHhcC-CHHHHHHHHHHHHHHH
Confidence 4443333 3334 2334444666666544
No 134
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.54 E-value=2.1e-13 Score=159.12 Aligned_cols=241 Identities=20% Similarity=0.220 Sum_probs=155.6
Q ss_pred CcCCHHHHHHHHHHHhhhcccccccCccccccCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCC
Q 047219 241 GSLTSEELDALVSVLQLAGRRIYGLDEPQLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESN 320 (567)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~ 320 (567)
..++..++..+++.++..+......++..........--+.|+|++++++.+.+.+..... |.. ....
T Consensus 470 ~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~--------gl~----~~~~ 537 (821)
T CHL00095 470 PVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARV--------GLK----NPNR 537 (821)
T ss_pred CccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhh--------ccc----CCCC
Confidence 3467788888888888776654433333222222333446799999999999988864311 000 0023
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh-----hhh-------chhHHHHHHHHHHHhcCCC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS-----KYY-------GESERLLGKVFSLANELPN 388 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s-----~~~-------G~~~~~l~~~f~~A~~~a~ 388 (567)
|...+||+||+|||||++|+++|+.+... ..+++.++++++.. +++ |+.+ .+.+.+.. ...|
T Consensus 538 p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~---~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~--~~~l~~~~-~~~p 611 (821)
T CHL00095 538 PIASFLFSGPTGVGKTELTKALASYFFGS---EDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNE--GGQLTEAV-RKKP 611 (821)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcCC---ccceEEEEchhccccccHHHhcCCCCcccCcCc--cchHHHHH-HhCC
Confidence 33468999999999999999999998543 34677777766532 222 2221 11233333 3445
Q ss_pred CcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc---------cCCcEEEEEeeCCCC-----------------
Q 047219 389 GAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE---------QDKKVVVIAATNRKQ----------------- 442 (567)
Q Consensus 389 ~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~---------~~~~viVIaaTN~~~----------------- 442 (567)
.+||+|||||++.+. +.+.|++.++... .-.++++|+|||...
T Consensus 612 ~~VvllDeieka~~~-----------v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~ 680 (821)
T CHL00095 612 YTVVLFDEIEKAHPD-----------IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSEN 680 (821)
T ss_pred CeEEEECChhhCCHH-----------HHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCccccc
Confidence 799999999998644 4455556555421 135899999998410
Q ss_pred --------------------CCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh-------------CHHHHHHHHHh-
Q 047219 443 --------------------DLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL-------------TKAELAELATA- 488 (567)
Q Consensus 443 --------------------~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~-------------~~~~l~~la~~- 488 (567)
.|.|+|++|+|.++.|.+.+.++...|+...+..+ .++..+.++..
T Consensus 681 ~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 681 QLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred ccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 15678999999999999999999999998877642 23445555553
Q ss_pred -ccCCCHHHHHHHHHHHHHHHHH
Q 047219 489 -TEEMSGRDIRDVCQQAERSWAS 510 (567)
Q Consensus 489 -t~g~s~~dL~~L~~~a~~~a~~ 510 (567)
...+-.+.|+.+++......+.
T Consensus 761 ~~~~~GAR~l~r~i~~~i~~~l~ 783 (821)
T CHL00095 761 YNPLYGARPLRRAIMRLLEDPLA 783 (821)
T ss_pred CCCCCChhhHHHHHHHHHHHHHH
Confidence 2345567777777665543333
No 135
>PRK06893 DNA replication initiation factor; Validated
Probab=99.54 E-value=4.1e-13 Score=133.95 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=101.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~ 402 (567)
..++||||||||||+|++++++++... +..+.+++....... ...+++... ...+|+||||+.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~---~~~~~y~~~~~~~~~--------~~~~~~~~~---~~dlLilDDi~~~~~ 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN---QRTAIYIPLSKSQYF--------SPAVLENLE---QQDLVCLDDLQAVIG 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEeeHHHhhhh--------hHHHHhhcc---cCCEEEEeChhhhcC
Confidence 458999999999999999999987433 345566665432110 112222222 246999999999865
Q ss_pred hhhhhhHHHHHHHHHHHHHhhcCcccCCcEE-EEEeeCCCCCCC---hHHHhccc--eEEEecCCCHHHHHHHHHHHHHh
Q 047219 403 ARDSEMHEATRRILSVLLRQIDGFEQDKKVV-VIAATNRKQDLD---PALISRFD--SMITFGLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 403 ~~q~~l~~~~~~vl~~LL~~ld~~~~~~~vi-VIaaTN~~~~Ld---~aL~sRf~--~~I~i~~P~~~eR~eIL~~~~~~ 476 (567)
..+. + ..++..++.....+..+ +++++..+..++ ++|++|+. ..+.++.|+.++|.++++..+..
T Consensus 106 ~~~~------~---~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~ 176 (229)
T PRK06893 106 NEEW------E---LAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ 176 (229)
T ss_pred ChHH------H---HHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHH
Confidence 4321 1 22333333333334444 455555566554 89999873 48899999999999999988763
Q ss_pred ----hCHHHHHHHHHhccCCCHHHHHHHHHH
Q 047219 477 ----LTKAELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 477 ----~~~~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
++++.++.++....+ +.+.+..++..
T Consensus 177 ~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 206 (229)
T PRK06893 177 RGIELSDEVANFLLKRLDR-DMHTLFDALDL 206 (229)
T ss_pred cCCCCCHHHHHHHHHhccC-CHHHHHHHHHH
Confidence 567778888877654 44444444443
No 136
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.54 E-value=2.2e-14 Score=150.43 Aligned_cols=178 Identities=18% Similarity=0.316 Sum_probs=119.0
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC--
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-- 350 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-- 350 (567)
..+.+.|.+|+|+++.|+.|...+. .+...++||.|++|||||++||++++.+....
T Consensus 10 ~~~~~pf~~ivGq~~~k~al~~~~~---------------------~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~ 68 (350)
T CHL00081 10 ERPVFPFTAIVGQEEMKLALILNVI---------------------DPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVV 68 (350)
T ss_pred cCCCCCHHHHhChHHHHHHHHHhcc---------------------CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCcc
Confidence 3566899999999999998876654 23446899999999999999999999885321
Q ss_pred ----CC----------------------------CcCeEEechhhHHhhhhchhHHHHHHHHHHH--------hcCCCCc
Q 047219 351 ----WQ----------------------------GVPLMYVPLEVVMSKYYGESERLLGKVFSLA--------NELPNGA 390 (567)
Q Consensus 351 ----~~----------------------------~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A--------~~~a~~~ 390 (567)
|. ..+|+.++...-.+.++|... +...|... ...+.++
T Consensus 69 ~~~pf~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD--~~~al~~g~~~~~~GlL~~A~~G 146 (350)
T CHL00081 69 KDDPFNSHPSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTID--IEKALTEGVKAFEPGLLAKANRG 146 (350)
T ss_pred CCCCCCCCCCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCccc--HHHHhhcCcccccCCeeeecCCC
Confidence 11 123333333333344444210 01111111 1234479
Q ss_pred EEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC-CCChHHHhccceEEEecCCC-HHHHHH
Q 047219 391 IIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ-DLDPALISRFDSMITFGLPD-HENRQE 468 (567)
Q Consensus 391 ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~-~Ld~aL~sRf~~~I~i~~P~-~~eR~e 468 (567)
+||||||+.+.++.|..+.+.+++-...+.+.......+.++++|+|.|+.+ .|+++|++||...+.+..|+ .+.+.+
T Consensus 147 iL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~ 226 (350)
T CHL00081 147 ILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVK 226 (350)
T ss_pred EEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHH
Confidence 9999999999988776655544321111111112223456899999999755 69999999999999999997 599999
Q ss_pred HHHHH
Q 047219 469 IAAQY 473 (567)
Q Consensus 469 IL~~~ 473 (567)
|++..
T Consensus 227 il~~~ 231 (350)
T CHL00081 227 IVEQR 231 (350)
T ss_pred HHHhh
Confidence 99875
No 137
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=4.2e-13 Score=149.60 Aligned_cols=196 Identities=20% Similarity=0.233 Sum_probs=134.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQ 352 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~ 352 (567)
..+.+|++|+|++.+++.|+..+.. ...++.+||+||+|+|||++|+++|+.+.+.. ..
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~--------------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~ 69 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES--------------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPT 69 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCC
Confidence 3457899999999999999988752 35667899999999999999999999986431 11
Q ss_pred CcCeEEec-hhhHHhh-------hhch---hHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHH
Q 047219 353 GVPLMYVP-LEVVMSK-------YYGE---SERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSV 418 (567)
Q Consensus 353 ~~~~~~i~-~~~l~s~-------~~G~---~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~ 418 (567)
..+|.... |..+... +-|. .-+.++.+.+.+.. .++..+++|||+|.|... .++.
T Consensus 70 ~~pC~~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~-----------a~na 138 (563)
T PRK06647 70 PMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS-----------AFNA 138 (563)
T ss_pred CCCCccchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH-----------HHHH
Confidence 11222111 1010000 0011 11334444433332 234679999999998632 4567
Q ss_pred HHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCH
Q 047219 419 LLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSG 494 (567)
Q Consensus 419 LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~ 494 (567)
|++.++. .+..+++|++|+.+..+.++|++|| ..++|..++.++....+...+.. +..+.+..++....| +.
T Consensus 139 LLK~LEe--pp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dl 214 (563)
T PRK06647 139 LLKTIEE--PPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SV 214 (563)
T ss_pred HHHhhcc--CCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 7888773 5678888888888888999999999 78999999999998888877653 456777778877655 55
Q ss_pred HHHHHHHHHH
Q 047219 495 RDIRDVCQQA 504 (567)
Q Consensus 495 ~dL~~L~~~a 504 (567)
+++..++..+
T Consensus 215 R~alslLdkl 224 (563)
T PRK06647 215 RDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHH
Confidence 5655555543
No 138
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=3.1e-13 Score=151.37 Aligned_cols=195 Identities=18% Similarity=0.197 Sum_probs=136.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC-CC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-QG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-~~ 353 (567)
.+.+|++|+|++..++.|.+.+.. .+.++++||+||+|+|||++|+++|+.+.+... ..
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~--------------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~ 78 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFET--------------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGD 78 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc--------------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc
Confidence 446999999999999999887752 466789999999999999999999999865311 00
Q ss_pred -----cCeEE-echhhHHhhhh----------chhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHH
Q 047219 354 -----VPLMY-VPLEVVMSKYY----------GESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRR 414 (567)
Q Consensus 354 -----~~~~~-i~~~~l~s~~~----------G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~ 414 (567)
.+|.. -+|..+..... ...-..++.+.+.+.. .+...|+||||+|.|...
T Consensus 79 ~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~----------- 147 (598)
T PRK09111 79 GGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA----------- 147 (598)
T ss_pred CCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH-----------
Confidence 01111 11111111000 0112345666555542 234689999999999632
Q ss_pred HHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhcc
Q 047219 415 ILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATE 490 (567)
Q Consensus 415 vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~ 490 (567)
..+.|++.++. .+..+++|.+|+..+.+.+.+++|| ..++|..++.++....+...++. +..+.++.++..+.
T Consensus 148 a~naLLKtLEe--Pp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 148 AFNALLKTLEE--PPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAE 224 (598)
T ss_pred HHHHHHHHHHh--CCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 34677777774 4567888888888888999999999 88999999999998888887764 45667777777765
Q ss_pred CCCHHHHHHHHHHH
Q 047219 491 EMSGRDIRDVCQQA 504 (567)
Q Consensus 491 g~s~~dL~~L~~~a 504 (567)
| +.+++.+++..+
T Consensus 225 G-dlr~al~~Ldkl 237 (598)
T PRK09111 225 G-SVRDGLSLLDQA 237 (598)
T ss_pred C-CHHHHHHHHHHH
Confidence 5 556665555544
No 139
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=9.6e-14 Score=151.32 Aligned_cols=171 Identities=14% Similarity=0.242 Sum_probs=115.0
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHH---HHHHHHHHHhcCCCCcEEEEcCc
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESER---LLGKVFSLANELPNGAIIFLDEV 397 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~---~l~~~f~~A~~~a~~~ILfIDEI 397 (567)
..++++|||++|||||+|++++++++... ..+..+++++++++...+...... .+..+.... . ...+|+|||+
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~~l~~~-~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~-~--~~dvLiIDDi 215 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKNYIESN-FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI-C--QNDVLIIDDV 215 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh-c--cCCEEEEecc
Confidence 34679999999999999999999977421 115678899999888776543322 122221221 2 2469999999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC---CCChHHHhccc--eEEEecCCCHHHHHHHHHH
Q 047219 398 DSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ---DLDPALISRFD--SMITFGLPDHENRQEIAAQ 472 (567)
Q Consensus 398 D~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~---~Ld~aL~sRf~--~~I~i~~P~~~eR~eIL~~ 472 (567)
+.+..+.. ....|...++.....+..+||++...|. .++++|++||. ..+.++.|+.++|.++++.
T Consensus 216 q~l~~k~~---------~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 216 QFLSYKEK---------TNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred ccccCCHH---------HHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 99865421 1223333333333334434444444443 36899999994 4888899999999999999
Q ss_pred HHHh------hCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 473 YAKH------LTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 473 ~~~~------~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
.++. ++++.++.++....| +.+.+..++..+.
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~ 324 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLN 324 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHH
Confidence 8864 567788888887765 6777777776655
No 140
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.8e-13 Score=152.34 Aligned_cols=181 Identities=17% Similarity=0.227 Sum_probs=127.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQ 352 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~ 352 (567)
..+.+|++|+|++.+++.|.+++.. .+.+..+||+||||||||++|+++|+.+.+.. ..
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~--------------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~ 69 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQE--------------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPT 69 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHc--------------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCC
Confidence 3457899999999999999887752 34567899999999999999999999996531 10
Q ss_pred C-----------------cCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHH
Q 047219 353 G-----------------VPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRI 415 (567)
Q Consensus 353 ~-----------------~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~v 415 (567)
+ ..++.++...- ..+... +.+...+..........||||||+|.|... .
T Consensus 70 ~~pCg~C~sC~~i~~g~hpDv~eId~a~~--~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~-----------a 135 (624)
T PRK14959 70 GEPCNTCEQCRKVTQGMHVDVVEIDGASN--RGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTRE-----------A 135 (624)
T ss_pred CCCCcccHHHHHHhcCCCCceEEEecccc--cCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHH-----------H
Confidence 1 12333332110 000111 122222222222334679999999999633 3
Q ss_pred HHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccC
Q 047219 416 LSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEE 491 (567)
Q Consensus 416 l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g 491 (567)
++.|++.++. ....+++|++||.+..+.+.|++|| ..++|..++.++..++|...+.. +..+.++.++..+.|
T Consensus 136 ~naLLk~LEE--P~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 136 FNALLKTLEE--PPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHHHHHHhhc--cCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 4667777774 4467889999988889999999999 78999999999999888876654 556777888877665
No 141
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.7e-13 Score=150.84 Aligned_cols=171 Identities=21% Similarity=0.296 Sum_probs=122.9
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
.|=.|++++|+++.+.+.-- ++ .+.-...-++|+||||+|||+|++.||+.+ +..|+.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~--------~l-------~~~~kGpILcLVGPPGVGKTSLgkSIA~al------~RkfvR~ 381 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQ--------KL-------TKKLKGPILCLVGPPGVGKTSLGKSIAKAL------GRKFVRI 381 (782)
T ss_pred ccccCchhHHHHHHHHHHHH--------HH-------hccCCCcEEEEECCCCCCchhHHHHHHHHh------CCCEEEE
Confidence 45689999999999977421 11 013344668899999999999999999999 5557777
Q ss_pred chh------hHHh---hhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHH--HHhhcCc--
Q 047219 360 PLE------VVMS---KYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVL--LRQIDGF-- 426 (567)
Q Consensus 360 ~~~------~l~s---~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~L--L~~ld~~-- 426 (567)
+.. ++.+ .|+|....++-+-...|....| +++|||||+|...-++.-..++-+++..= -...|.+
T Consensus 382 sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NP--v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLe 459 (782)
T COG0466 382 SLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNP--VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLE 459 (782)
T ss_pred ecCccccHHHhccccccccccCChHHHHHHHHhCCcCC--eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhcccc
Confidence 653 2322 3667766666666777776654 99999999998776554333322221100 0111111
Q ss_pred --ccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHH
Q 047219 427 --EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYA 474 (567)
Q Consensus 427 --~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~ 474 (567)
-.-.+|+||+|+|..+.++..|+.|+ .+|++.-++.++..+|.+.|+
T Consensus 460 v~yDLS~VmFiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 460 VPYDLSKVMFIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred CccchhheEEEeecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 12368999999999999999999999 999999999999999999875
No 142
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.6e-13 Score=152.02 Aligned_cols=193 Identities=21% Similarity=0.278 Sum_probs=134.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC--
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-- 351 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-- 351 (567)
..+.+|++|+|++.+++.|+..+.. .+.++.+||+||+|||||++|+++|+.+.+...
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~--------------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~ 71 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKS--------------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD 71 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC
Confidence 3557999999999999999988752 456778999999999999999999999864311
Q ss_pred CCcCeEEechhhHHhh---hh---c---hhHHHHHHHHHHHhcC---CCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHH
Q 047219 352 QGVPLMYVPLEVVMSK---YY---G---ESERLLGKVFSLANEL---PNGAIIFLDEVDSFAVARDSEMHEATRRILSVL 419 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~---~~---G---~~~~~l~~~f~~A~~~---a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~L 419 (567)
...+|..+. ..... ++ + .....++.+.+.+... ++..|++|||+|.|... .++.|
T Consensus 72 ~~~pC~~C~--~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-----------A~NAL 138 (725)
T PRK07133 72 LLEPCQECI--ENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-----------AFNAL 138 (725)
T ss_pred CCCchhHHH--HhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-----------HHHHH
Confidence 001111110 00000 00 0 1123456665555432 34579999999998633 45678
Q ss_pred HHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHH
Q 047219 420 LRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGR 495 (567)
Q Consensus 420 L~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~ 495 (567)
+..++. .+..+++|++|+.++.+.+.+++|| ..++|..++.++....+...+.. +..+.+..++..+.| +.+
T Consensus 139 LKtLEE--PP~~tifILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR 214 (725)
T PRK07133 139 LKTLEE--PPKHVIFILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLR 214 (725)
T ss_pred HHHhhc--CCCceEEEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 888874 5678888888888899999999999 79999999999999888876654 345567777777654 444
Q ss_pred HHHHHHHH
Q 047219 496 DIRDVCQQ 503 (567)
Q Consensus 496 dL~~L~~~ 503 (567)
++..++..
T Consensus 215 ~AlslLek 222 (725)
T PRK07133 215 DALSIAEQ 222 (725)
T ss_pred HHHHHHHH
Confidence 44444443
No 143
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=4.8e-13 Score=145.91 Aligned_cols=177 Identities=19% Similarity=0.244 Sum_probs=125.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC---
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW--- 351 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~--- 351 (567)
.+.+|++|+|++.+++.+...+.. ...++.+|||||||+|||++|+++|+.+.....
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~--------------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~ 71 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRF--------------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTED 71 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc--------------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccC
Confidence 447999999999999999887752 356788999999999999999999999854210
Q ss_pred ----------------CCcCeEEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhhhHHHH
Q 047219 352 ----------------QGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSEMHEAT 412 (567)
Q Consensus 352 ----------------~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~l~~~~ 412 (567)
...+++.+++... .| -..++.+.+... ..+...|+||||+|.|...
T Consensus 72 ~~~c~~c~~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~--------- 136 (451)
T PRK06305 72 QEPCNQCASCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE--------- 136 (451)
T ss_pred CCCCcccHHHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH---------
Confidence 0112333332110 11 122333222222 2244689999999998633
Q ss_pred HHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHh
Q 047219 413 RRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATA 488 (567)
Q Consensus 413 ~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~ 488 (567)
..+.|++.++. .+..+++|++||.+..+.+.+++|| ..++|..++.++....+...++. +..+.++.++..
T Consensus 137 --~~n~LLk~lEe--p~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 137 --AFNSLLKTLEE--PPQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred --HHHHHHHHhhc--CCCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34677888875 4567888888888889999999999 88999999999988888876653 456677778777
Q ss_pred ccC
Q 047219 489 TEE 491 (567)
Q Consensus 489 t~g 491 (567)
+.|
T Consensus 212 s~g 214 (451)
T PRK06305 212 AQG 214 (451)
T ss_pred cCC
Confidence 654
No 144
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=3.8e-13 Score=149.12 Aligned_cols=188 Identities=22% Similarity=0.298 Sum_probs=133.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC-C
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ-G 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~-~ 353 (567)
.+.+|++++|++.+++.+.+.+.. ...++++||+||+|||||++|+++|+.+.+..+. .
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~--------------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~ 70 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILN--------------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG 70 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc--------------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 457899999999999999887742 4567889999999999999999999998653211 1
Q ss_pred cC-----------------eEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 354 VP-----------------LMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 354 ~~-----------------~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
.+ ++.+++.. . ..-..++.+.+.+.. .++..|++|||+|.|...
T Consensus 71 ~~Cg~C~sCr~i~~~~h~DiieIdaas----~--igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~---------- 134 (605)
T PRK05896 71 DCCNSCSVCESINTNQSVDIVELDAAS----N--NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS---------- 134 (605)
T ss_pred CCCcccHHHHHHHcCCCCceEEecccc----c--cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH----------
Confidence 12 22222211 0 112234555444332 234579999999998633
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
..+.|+..++. .+..+++|++|+.+..+.+.+++|| ..++|..++.++....+...+.. +..+.+..++..+
T Consensus 135 -A~NaLLKtLEE--Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS 210 (605)
T PRK05896 135 -AWNALLKTLEE--PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLA 210 (605)
T ss_pred -HHHHHHHHHHh--CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 33667777773 4567888888888899999999999 78999999999998888877654 5567777777776
Q ss_pred cCCCHHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQQ 503 (567)
Q Consensus 490 ~g~s~~dL~~L~~~ 503 (567)
.| +.+++..++..
T Consensus 211 ~G-dlR~AlnlLek 223 (605)
T PRK05896 211 DG-SLRDGLSILDQ 223 (605)
T ss_pred CC-cHHHHHHHHHH
Confidence 65 44444444443
No 145
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=2.1e-13 Score=148.45 Aligned_cols=171 Identities=20% Similarity=0.291 Sum_probs=114.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhH-HHHHHHHHHHhcCCCCcEEEEcCcchh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESE-RLLGKVFSLANELPNGAIIFLDEVDSF 400 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~-~~l~~~f~~A~~~a~~~ILfIDEID~L 400 (567)
.++++||||||||||+|++++++++... ..+..+.+++++++...+..... ..... |...... ...+|+|||++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~-~~dvLlIDDi~~l 206 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRK-KVDVLLIDDVQFL 206 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHh-cCCEEEEechhhh
Confidence 4679999999999999999999987432 11456889999887776543321 11222 2222221 2479999999988
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCC---CChHHHhccc--eEEEecCCCHHHHHHHHHHHHH
Q 047219 401 AVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQD---LDPALISRFD--SMITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 401 ~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~---Ld~aL~sRf~--~~I~i~~P~~~eR~eIL~~~~~ 475 (567)
.++.. ....|+..++.+...+..+||++.+.+.. +.+.|++||. ..+.|+.|+.+.|.+|++..+.
T Consensus 207 ~~~~~---------~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~ 277 (440)
T PRK14088 207 IGKTG---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 (440)
T ss_pred cCcHH---------HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHH
Confidence 65421 11223333333333345566655555554 6688999993 3888999999999999999886
Q ss_pred h----hCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 476 H----LTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 476 ~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
. ++++.++.++....+ +.++|..++....
T Consensus 278 ~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~ 310 (440)
T PRK14088 278 IEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_pred hcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHH
Confidence 4 567788888887664 5666666666543
No 146
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.52 E-value=1.8e-13 Score=146.60 Aligned_cols=218 Identities=21% Similarity=0.333 Sum_probs=137.1
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhh--ccccccc-CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIAR--GTRCKFE-SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPL 356 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~--~~~~~~~-~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~ 356 (567)
+.|+|++++++.+...+....+. +.. ......+ .....++||+||||||||++|+++|+.+ +.+|
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~------~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l------~~pf 144 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKR------LNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL------NVPF 144 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhh------hccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc------CCCe
Confidence 45799999999998777443222 110 0000000 1224689999999999999999999988 6778
Q ss_pred EEechhhHH-hhhhchh-HHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhhh--HHH-HHHHHHHHHHhhcCcc-
Q 047219 357 MYVPLEVVM-SKYYGES-ERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSEM--HEA-TRRILSVLLRQIDGFE- 427 (567)
Q Consensus 357 ~~i~~~~l~-s~~~G~~-~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~l--~~~-~~~vl~~LL~~ld~~~- 427 (567)
..+++..+. ..|+|+. +..+..++..+. ..+.++||||||||.+..+..... ..+ -..+++.||+.+++..
T Consensus 145 ~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~ 224 (413)
T TIGR00382 145 AIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVA 224 (413)
T ss_pred EEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccce
Confidence 888877664 3577774 344444443221 123468999999999987533210 011 1235566777765432
Q ss_pred ----------cCCcEEEEEeeCCC---------------------------C-----------------------CCChH
Q 047219 428 ----------QDKKVVVIAATNRK---------------------------Q-----------------------DLDPA 447 (567)
Q Consensus 428 ----------~~~~viVIaaTN~~---------------------------~-----------------------~Ld~a 447 (567)
...++++|.|+|.. . .|.|+
T Consensus 225 ~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PE 304 (413)
T TIGR00382 225 NVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPE 304 (413)
T ss_pred ecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHH
Confidence 12467788887750 0 15688
Q ss_pred HHhccceEEEecCCCHHHHHHHHHHHHHh-----------------hCHHHHHHHHHh--ccCCCHHHHHHHHHHHHHHH
Q 047219 448 LISRFDSMITFGLPDHENRQEIAAQYAKH-----------------LTKAELAELATA--TEEMSGRDIRDVCQQAERSW 508 (567)
Q Consensus 448 L~sRf~~~I~i~~P~~~eR~eIL~~~~~~-----------------~~~~~l~~la~~--t~g~s~~dL~~L~~~a~~~a 508 (567)
|+.|++.++.|...+.++..+|+...... +.++.++.+++. ...+-.+.|+.+++......
T Consensus 305 flgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 305 FIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDV 384 (413)
T ss_pred HhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHH
Confidence 88899999999999999999998863221 234455555553 33455666666666555433
Q ss_pred H
Q 047219 509 A 509 (567)
Q Consensus 509 ~ 509 (567)
.
T Consensus 385 m 385 (413)
T TIGR00382 385 M 385 (413)
T ss_pred H
Confidence 3
No 147
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.52 E-value=2.2e-13 Score=157.03 Aligned_cols=203 Identities=19% Similarity=0.272 Sum_probs=139.2
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
++..|++++|+.+.+.+...... +...+..++|+||||||||++++.+++.+ +.+++.+
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~---------------~~~~g~~i~l~GppG~GKTtl~~~ia~~l------~~~~~~i 380 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV---------------NKIKGPILCLVGPPGVGKTSLGQSIAKAT------GRKYVRM 380 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc---------------ccCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEE
Confidence 45899999999998877532111 12234579999999999999999999998 5567666
Q ss_pred chhhHH---------hhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc----
Q 047219 360 PLEVVM---------SKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---- 426 (567)
Q Consensus 360 ~~~~l~---------s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~---- 426 (567)
+..... ..|.|.....+...+..+... +.++||||||.+....+... ...|+..+|.-
T Consensus 381 ~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~--~~villDEidk~~~~~~g~~-------~~aLlevld~~~~~~ 451 (784)
T PRK10787 381 ALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVK--NPLFLLDEIDKMSSDMRGDP-------ASALLEVLDPEQNVA 451 (784)
T ss_pred EcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCC--CCEEEEEChhhcccccCCCH-------HHHHHHHhccccEEE
Confidence 544321 123444444444444443322 46999999999986644321 23444444421
Q ss_pred ---------ccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHH-h-------------hCHHHHH
Q 047219 427 ---------EQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAK-H-------------LTKAELA 483 (567)
Q Consensus 427 ---------~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~-~-------------~~~~~l~ 483 (567)
..-+++++|+|+|.. .++++|++|| ..|.+..++.++..+|++.++. + +..+...
T Consensus 452 ~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~ 529 (784)
T PRK10787 452 FSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAII 529 (784)
T ss_pred EecccccccccCCceEEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHH
Confidence 123689999999987 5999999999 7899999999999999988773 1 2344555
Q ss_pred HHHH-hccCCCHHHHHHHHHHHHHHHHHHHHh
Q 047219 484 ELAT-ATEEMSGRDIRDVCQQAERSWASKIIR 514 (567)
Q Consensus 484 ~la~-~t~g~s~~dL~~L~~~a~~~a~~r~i~ 514 (567)
.++. ++..+-.+.|+..+....+..+.+.+.
T Consensus 530 ~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~ 561 (784)
T PRK10787 530 GIIRYYTREAGVRSLEREISKLCRKAVKQLLL 561 (784)
T ss_pred HHHHhCCcccCCcHHHHHHHHHHHHHHHHHHh
Confidence 5543 445566788888888877777766653
No 148
>PRK05642 DNA replication initiation factor; Validated
Probab=99.52 E-value=8.6e-13 Score=132.04 Aligned_cols=159 Identities=17% Similarity=0.237 Sum_probs=109.7
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFA 401 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~ 401 (567)
..+++||||+|||||+|++++++++... +..+++++..++.... ..+.+.... ..+|+|||++.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~---~~~v~y~~~~~~~~~~--------~~~~~~~~~---~d~LiiDDi~~~~ 110 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR---GEPAVYLPLAELLDRG--------PELLDNLEQ---YELVCLDDLDVIA 110 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEeeHHHHHhhh--------HHHHHhhhh---CCEEEEechhhhc
Confidence 4789999999999999999999987433 4678899988776531 122222222 3589999999886
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCC---CChHHHhccc--eEEEecCCCHHHHHHHHHHHHHh
Q 047219 402 VARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQD---LDPALISRFD--SMITFGLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 402 ~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~---Ld~aL~sRf~--~~I~i~~P~~~eR~eIL~~~~~~ 476 (567)
++.+ ....|+..++.....+..++|+++..+.. +.++|++||. ..+.++.|+.+++.++++..+..
T Consensus 111 ~~~~---------~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~ 181 (234)
T PRK05642 111 GKAD---------WEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASR 181 (234)
T ss_pred CChH---------HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH
Confidence 5522 12344555554445566677777765543 4699999994 57788999999999999966553
Q ss_pred ----hCHHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 477 ----LTKAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 477 ----~~~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
++++.++.++....+ +.+.+..+++..
T Consensus 182 ~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 212 (234)
T PRK05642 182 RGLHLTDEVGHFILTRGTR-SMSALFDLLERL 212 (234)
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 566777777777654 555555555544
No 149
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.51 E-value=2.5e-13 Score=148.09 Aligned_cols=198 Identities=21% Similarity=0.266 Sum_probs=151.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~ 353 (567)
.+.+|++++|++...+.|.+.+.. .+..++.||+||.|||||++||.+|+.+++.. -.+
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~--------------------~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ 70 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALEN--------------------GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTA 70 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHh--------------------CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCC
Confidence 446899999999999999998863 56678899999999999999999999997653 222
Q ss_pred cCeEEec-hhhHHhh-h---------hchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHH
Q 047219 354 VPLMYVP-LEVVMSK-Y---------YGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVL 419 (567)
Q Consensus 354 ~~~~~i~-~~~l~s~-~---------~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~L 419 (567)
-+|.... |..+... + ....-+.++.+.+.+.. .+...|++|||+|.|. ...++.|
T Consensus 71 ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-----------~~afNAL 139 (515)
T COG2812 71 EPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-----------KQAFNAL 139 (515)
T ss_pred CcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-----------HHHHHHH
Confidence 3333221 1112111 0 11133456666665542 2346899999999986 3467889
Q ss_pred HHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHH
Q 047219 420 LRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGR 495 (567)
Q Consensus 420 L~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~ 495 (567)
|+.++ +++.+|.+|.+|..+..+++.++||| ..+.|...+.++...-|...+.+ +..+.+..++....| +.+
T Consensus 140 LKTLE--EPP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~R 215 (515)
T COG2812 140 LKTLE--EPPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLR 215 (515)
T ss_pred hcccc--cCccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chh
Confidence 99888 57889999999999999999999999 89999999999988888888774 566778888888766 788
Q ss_pred HHHHHHHHHHHH
Q 047219 496 DIRDVCQQAERS 507 (567)
Q Consensus 496 dL~~L~~~a~~~ 507 (567)
|.-.++.++...
T Consensus 216 DalslLDq~i~~ 227 (515)
T COG2812 216 DALSLLDQAIAF 227 (515)
T ss_pred hHHHHHHHHHHc
Confidence 988888888743
No 150
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=6.6e-13 Score=145.81 Aligned_cols=195 Identities=21% Similarity=0.291 Sum_probs=130.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC-C
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ-G 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~-~ 353 (567)
.+.+|++++|++.+++.++..+.. ...++.+||+||+|+|||++|+.+|+.+.+.... .
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~--------------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~ 70 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKL--------------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEG 70 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCC
Confidence 456899999999999999888752 3456678999999999999999999998642100 1
Q ss_pred cCeEEe-chhhHHhh----h------hchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHH
Q 047219 354 VPLMYV-PLEVVMSK----Y------YGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVL 419 (567)
Q Consensus 354 ~~~~~i-~~~~l~s~----~------~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~L 419 (567)
-+|-.. +|..+... + ....-..++.+.+.+.. .+...|++|||+|.|... ..+.|
T Consensus 71 ~pc~~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~-----------a~naL 139 (486)
T PRK14953 71 EPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE-----------AFNAL 139 (486)
T ss_pred CCCCccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-----------HHHHH
Confidence 122211 11111110 0 00111233444443332 234579999999988632 34567
Q ss_pred HHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHH
Q 047219 420 LRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGR 495 (567)
Q Consensus 420 L~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~ 495 (567)
+..++. .+..+++|.+|+..+.+.+++.+|| ..+.|..++.++....+...++. +..+.+..++..+.| +.+
T Consensus 140 Lk~LEe--pp~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr 215 (486)
T PRK14953 140 LKTLEE--PPPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMR 215 (486)
T ss_pred HHHHhc--CCCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 777764 4556777777877888999999999 78999999999999999988765 345677777777654 445
Q ss_pred HHHHHHHHH
Q 047219 496 DIRDVCQQA 504 (567)
Q Consensus 496 dL~~L~~~a 504 (567)
++.+++..+
T Consensus 216 ~al~~Ldkl 224 (486)
T PRK14953 216 DAASLLDQA 224 (486)
T ss_pred HHHHHHHHH
Confidence 555555443
No 151
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.50 E-value=1.6e-12 Score=139.33 Aligned_cols=207 Identities=23% Similarity=0.324 Sum_probs=134.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
+....+.++|.++++++|...+...+. ...+.+++|+||||||||++++.+++++.... .++
T Consensus 25 ~~~~P~~l~~Re~e~~~l~~~l~~~~~-----------------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-~~~ 86 (394)
T PRK00411 25 PDYVPENLPHREEQIEELAFALRPALR-----------------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-VKV 86 (394)
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHHhC-----------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-CCc
Confidence 444567899999999999888754321 24456799999999999999999999874321 135
Q ss_pred CeEEechhhH----------Hhhhhch--------hHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHH
Q 047219 355 PLMYVPLEVV----------MSKYYGE--------SERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRIL 416 (567)
Q Consensus 355 ~~~~i~~~~l----------~s~~~G~--------~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl 416 (567)
.++++++... ...+.+. ....+..+.+.......+.+|+|||+|.+..... ...+
T Consensus 87 ~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l 159 (394)
T PRK00411 87 VYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVL 159 (394)
T ss_pred EEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHH
Confidence 6777776432 2222221 1223333444444334457999999999962111 1234
Q ss_pred HHHHHhhcCcccCCcEEEEEeeCCCC---CCChHHHhccc-eEEEecCCCHHHHHHHHHHHHHh------hCHHHHHHHH
Q 047219 417 SVLLRQIDGFEQDKKVVVIAATNRKQ---DLDPALISRFD-SMITFGLPDHENRQEIAAQYAKH------LTKAELAELA 486 (567)
Q Consensus 417 ~~LL~~ld~~~~~~~viVIaaTN~~~---~Ld~aL~sRf~-~~I~i~~P~~~eR~eIL~~~~~~------~~~~~l~~la 486 (567)
..|+..++... ..++.+|+++|..+ .+++.+.+||. ..+.|++++.++..++++..++. +..+.++.++
T Consensus 160 ~~l~~~~~~~~-~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~ 238 (394)
T PRK00411 160 YSLLRAHEEYP-GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIA 238 (394)
T ss_pred HHHHHhhhccC-CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHH
Confidence 55555554432 23788889888643 57888888884 47899999999999999988753 4556677777
Q ss_pred HhccCCCHHHHH---HHHHHHHHHH
Q 047219 487 TATEEMSGRDIR---DVCQQAERSW 508 (567)
Q Consensus 487 ~~t~g~s~~dL~---~L~~~a~~~a 508 (567)
+.+.+.+ +|++ .+|..|+..+
T Consensus 239 ~~~~~~~-Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 239 DLTAREH-GDARVAIDLLRRAGLIA 262 (394)
T ss_pred HHHHHhc-CcHHHHHHHHHHHHHHH
Confidence 7664422 2444 5555555433
No 152
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.50 E-value=1.2e-12 Score=147.96 Aligned_cols=193 Identities=20% Similarity=0.306 Sum_probs=125.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC---CC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM---PW 351 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~---~~ 351 (567)
.+.+|++|+|++..++.+...+. ...+.+++|+||||||||++|+++++..... ++
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia---------------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~ 207 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVA---------------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPF 207 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHh---------------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcc
Confidence 45789999999999998876553 3446689999999999999999999877421 11
Q ss_pred -CCcCeEEechhhHH-------hhhhchhHHH----HHHHHHH---------HhcCCCCcEEEEcCcchhhhhhhhhhHH
Q 047219 352 -QGVPLMYVPLEVVM-------SKYYGESERL----LGKVFSL---------ANELPNGAIIFLDEVDSFAVARDSEMHE 410 (567)
Q Consensus 352 -~~~~~~~i~~~~l~-------s~~~G~~~~~----l~~~f~~---------A~~~a~~~ILfIDEID~L~~~~q~~l~~ 410 (567)
.+.+|+.+++..+. ..++|..... ....+.. ......+++|||||++.|....|..+..
T Consensus 208 ~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~ 287 (615)
T TIGR02903 208 AEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLK 287 (615)
T ss_pred cCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHH
Confidence 14567777775431 1223321110 0001110 0012246899999999998877766655
Q ss_pred HHHHHHHH----------------HHHhhcCcccCCcEEEEEee-CCCCCCChHHHhccceEEEecCCCHHHHHHHHHHH
Q 047219 411 ATRRILSV----------------LLRQIDGFEQDKKVVVIAAT-NRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY 473 (567)
Q Consensus 411 ~~~~vl~~----------------LL~~ld~~~~~~~viVIaaT-N~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~ 473 (567)
.+++.... +...++ ...+.++++|++| +.++.++++|++|| ..+.++.++.++..+|++..
T Consensus 288 ~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~-~~~~~~~VLI~aTt~~~~~l~~aLrSR~-~~i~~~pls~edi~~Il~~~ 365 (615)
T TIGR02903 288 VLEDKRVEFSSSYYDPDDPNVPKYIKKLFE-EGAPADFVLIGATTRDPEEINPALRSRC-AEVFFEPLTPEDIALIVLNA 365 (615)
T ss_pred HHhhCeEEeecceeccCCcccchhhhhhcc-cCccceEEEEEeccccccccCHHHHhce-eEEEeCCCCHHHHHHHHHHH
Confidence 55431100 000011 1123457777665 55778999999999 67889999999999999998
Q ss_pred HHh----hCHHHHHHHHHhcc
Q 047219 474 AKH----LTKAELAELATATE 490 (567)
Q Consensus 474 ~~~----~~~~~l~~la~~t~ 490 (567)
+.. +..+.++.++.+++
T Consensus 366 a~~~~v~ls~eal~~L~~ys~ 386 (615)
T TIGR02903 366 AEKINVHLAAGVEELIARYTI 386 (615)
T ss_pred HHHcCCCCCHHHHHHHHHCCC
Confidence 775 44566667766655
No 153
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.50 E-value=1.6e-12 Score=146.43 Aligned_cols=203 Identities=18% Similarity=0.272 Sum_probs=135.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCC----CCC
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGA----MPW 351 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~----~~~ 351 (567)
.+.-+.|.|.++++++|...+...+.. ..+...++|+|+||||||++++.+.+++.. ...
T Consensus 751 DYVPD~LPhREeEIeeLasfL~paIkg----------------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~l 814 (1164)
T PTZ00112 751 DVVPKYLPCREKEIKEVHGFLESGIKQ----------------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLL 814 (1164)
T ss_pred ccCCCcCCChHHHHHHHHHHHHHHHhc----------------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 344578999999999999888654321 233344579999999999999999988732 112
Q ss_pred CCcCeEEechhhHHh----------hhhch-------hHHHHHHHHHHHhc-CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 352 QGVPLMYVPLEVVMS----------KYYGE-------SERLLGKVFSLANE-LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s----------~~~G~-------~~~~l~~~f~~A~~-~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
..+.+++|+|..+.. .+++. ....+..+|..... .....||+|||||.|....|
T Consensus 815 p~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~Q-------- 886 (1164)
T PTZ00112 815 PSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQ-------- 886 (1164)
T ss_pred CCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHH--------
Confidence 235678888843211 11111 23345566665432 22236999999999976532
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCC---CCCCChHHHhccce-EEEecCCCHHHHHHHHHHHHHh----hCHHHHHHH
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNR---KQDLDPALISRFDS-MITFGLPDHENRQEIAAQYAKH----LTKAELAEL 485 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~---~~~Ld~aL~sRf~~-~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~l 485 (567)
.++..|+.+.. .....+.||+++|. +..+++.+++||.. .+.|++++.+++.+||+..+.. +.++.++.+
T Consensus 887 DVLYnLFR~~~--~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELI 964 (1164)
T PTZ00112 887 KVLFTLFDWPT--KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLC 964 (1164)
T ss_pred HHHHHHHHHhh--ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 33444555433 23467999999986 55688999999854 4889999999999999998874 456666666
Q ss_pred HHhccCCCHHHHHHHHHHHH
Q 047219 486 ATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 486 a~~t~g~s~~dL~~L~~~a~ 505 (567)
++..... .+|+|.++....
T Consensus 965 ArkVAq~-SGDARKALDILR 983 (1164)
T PTZ00112 965 ARKVANV-SGDIRKALQICR 983 (1164)
T ss_pred HHhhhhc-CCHHHHHHHHHH
Confidence 6654433 347777665444
No 154
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.8e-13 Score=147.21 Aligned_cols=187 Identities=17% Similarity=0.229 Sum_probs=128.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC-
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ- 352 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~- 352 (567)
..+.+|++|+|++.+++.|+..+.. .+.++.+||+||||||||++|+++|+.+.+....
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~--------------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~ 69 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRM--------------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMID 69 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHh--------------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcC
Confidence 3457899999999999998887752 4567789999999999999999999999653100
Q ss_pred -------------------------CcCeEEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhh
Q 047219 353 -------------------------GVPLMYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVAR 404 (567)
Q Consensus 353 -------------------------~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~ 404 (567)
..++..+++... ...+.++.+.+.+. ..++..++||||+|.|...
T Consensus 70 ~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~- 142 (397)
T PRK14955 70 DADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA- 142 (397)
T ss_pred cccccccCCCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-
Confidence 012222222110 01234444444442 2344679999999999643
Q ss_pred hhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHH
Q 047219 405 DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKA 480 (567)
Q Consensus 405 q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~ 480 (567)
..+.|+..++. .+..+++|.+|+....+.+.+++|+ ..++|..++.++....+...++. +..+
T Consensus 143 ----------~~~~LLk~LEe--p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~ 209 (397)
T PRK14955 143 ----------AFNAFLKTLEE--PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDAD 209 (397)
T ss_pred ----------HHHHHHHHHhc--CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 23456666663 4456777777777788999999999 78999999998888888877643 5667
Q ss_pred HHHHHHHhccCCCHHHHHHHH
Q 047219 481 ELAELATATEEMSGRDIRDVC 501 (567)
Q Consensus 481 ~l~~la~~t~g~s~~dL~~L~ 501 (567)
.++.++..+.| +.+.+.+.+
T Consensus 210 al~~l~~~s~g-~lr~a~~~L 229 (397)
T PRK14955 210 ALQLIGRKAQG-SMRDAQSIL 229 (397)
T ss_pred HHHHHHHHcCC-CHHHHHHHH
Confidence 78888877655 333333333
No 155
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.3e-12 Score=147.31 Aligned_cols=183 Identities=20% Similarity=0.299 Sum_probs=128.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC--
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ-- 352 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~-- 352 (567)
.+.+|++++|++.+++.|...+.. .+.+.++||+||+|||||++|+++|+.+.+....
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~--------------------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~ 70 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALIS--------------------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP 70 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHc--------------------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC
Confidence 457899999999999999887752 2446789999999999999999999998653111
Q ss_pred -CcCeEEech-hhHHh----------hhhchhHHHHHHHHHHHhcC---CCCcEEEEcCcchhhhhhhhhhHHHHHHHHH
Q 047219 353 -GVPLMYVPL-EVVMS----------KYYGESERLLGKVFSLANEL---PNGAIIFLDEVDSFAVARDSEMHEATRRILS 417 (567)
Q Consensus 353 -~~~~~~i~~-~~l~s----------~~~G~~~~~l~~~f~~A~~~---a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~ 417 (567)
..+|..... ..+.. ...+..-+.++++.+.+... +...|+||||+|.|... ..+
T Consensus 71 ~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~-----------a~n 139 (620)
T PRK14948 71 TPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTA-----------AFN 139 (620)
T ss_pred CCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHH-----------HHH
Confidence 112221110 00100 00112234566666655432 34579999999999632 446
Q ss_pred HHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccC
Q 047219 418 VLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEE 491 (567)
Q Consensus 418 ~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g 491 (567)
.|++.++. .+..+++|++|+.+..+.+.|++|| ..++|..++.++....+...+.+ +..+.+..++..+.|
T Consensus 140 aLLK~LEe--Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 140 ALLKTLEE--PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred HHHHHHhc--CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 77888873 5667888888888888999999999 88999999988887777766654 445677777777665
No 156
>PRK08727 hypothetical protein; Validated
Probab=99.50 E-value=2.1e-12 Score=129.19 Aligned_cols=153 Identities=22% Similarity=0.311 Sum_probs=102.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFA 401 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~ 401 (567)
...++|+||+|||||+|++++++++... +....+++..++... +...++... ...+|+|||++.+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~---~~~~~y~~~~~~~~~--------~~~~~~~l~---~~dlLiIDDi~~l~ 106 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQA---GRSSAYLPLQAAAGR--------LRDALEALE---GRSLVALDGLESIA 106 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEeHHHhhhh--------HHHHHHHHh---cCCEEEEeCccccc
Confidence 4569999999999999999999987544 456677776554432 222333332 24699999999987
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeC-CCCC---CChHHHhcc--ceEEEecCCCHHHHHHHHHHHHH
Q 047219 402 VARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATN-RKQD---LDPALISRF--DSMITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 402 ~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN-~~~~---Ld~aL~sRf--~~~I~i~~P~~~eR~eIL~~~~~ 475 (567)
.+... ...++..++.....+ ..+|.|+| .+.. +.++|++|| ...++++.|+.+++.++++.++.
T Consensus 107 ~~~~~---------~~~lf~l~n~~~~~~-~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~ 176 (233)
T PRK08727 107 GQRED---------EVALFDFHNRARAAG-ITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQ 176 (233)
T ss_pred CChHH---------HHHHHHHHHHHHHcC-CeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHH
Confidence 54321 122233333322223 33555554 5554 479999996 46889999999999999998765
Q ss_pred h----hCHHHHHHHHHhccCCCHHHHHHHHH
Q 047219 476 H----LTKAELAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 476 ~----~~~~~l~~la~~t~g~s~~dL~~L~~ 502 (567)
. ++.+.++.++..+.| |++.+.+
T Consensus 177 ~~~l~l~~e~~~~La~~~~r----d~r~~l~ 203 (233)
T PRK08727 177 RRGLALDEAAIDWLLTHGER----ELAGLVA 203 (233)
T ss_pred HcCCCCCHHHHHHHHHhCCC----CHHHHHH
Confidence 3 567788888887653 5555533
No 157
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.50 E-value=2.6e-13 Score=144.07 Aligned_cols=172 Identities=18% Similarity=0.262 Sum_probs=123.2
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcch
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDS 399 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~ 399 (567)
...++++|||+.|.|||+|++|++++..... ....+++++.+.+...++......-..-|+.-. . -.+++||+|+.
T Consensus 111 ~~~nplfi~G~~GlGKTHLl~Aign~~~~~~-~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y-~--~dlllIDDiq~ 186 (408)
T COG0593 111 GAYNPLFIYGGVGLGKTHLLQAIGNEALANG-PNARVVYLTSEDFTNDFVKALRDNEMEKFKEKY-S--LDLLLIDDIQF 186 (408)
T ss_pred CcCCcEEEECCCCCCHHHHHHHHHHHHHhhC-CCceEEeccHHHHHHHHHHHHHhhhHHHHHHhh-c--cCeeeechHhH
Confidence 3568899999999999999999999985431 145688899988888776554443344555555 3 35999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCC---CChHHHhccce--EEEecCCCHHHHHHHHHHHH
Q 047219 400 FAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQD---LDPALISRFDS--MITFGLPDHENRQEIAAQYA 474 (567)
Q Consensus 400 L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~---Ld~aL~sRf~~--~I~i~~P~~~eR~eIL~~~~ 474 (567)
+.++. +...+|...++.+...+..+|+.+...|.. +.++|++||.+ .+.+..|+.+.|..||...+
T Consensus 187 l~gk~---------~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka 257 (408)
T COG0593 187 LAGKE---------RTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKA 257 (408)
T ss_pred hcCCh---------hHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHH
Confidence 98762 223455555555555566666666666665 55999999955 77889999999999999977
Q ss_pred Hh----hCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 475 KH----LTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 475 ~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
+. ++++....++..... +.++|..+++...
T Consensus 258 ~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~ 291 (408)
T COG0593 258 EDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLD 291 (408)
T ss_pred HhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHH
Confidence 64 567777777777543 4555555554443
No 158
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.9e-12 Score=137.82 Aligned_cols=187 Identities=20% Similarity=0.324 Sum_probs=129.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC--
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-- 351 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-- 351 (567)
..+.+|++++|++.+++.+.+.+.. ...+.++|||||||+|||++|+++++.+.....
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~--------------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~ 70 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN--------------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDD 70 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 3457899999999999999887752 356778999999999999999999999854211
Q ss_pred --C--CcCeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhc
Q 047219 352 --Q--GVPLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQID 424 (567)
Q Consensus 352 --~--~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld 424 (567)
. ...++.++... ......++.+++.+.. .++..+++|||+|.+... .++.|+..++
T Consensus 71 ~~~~~~~~~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-----------~~~~ll~~le 133 (367)
T PRK14970 71 PNEDFSFNIFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-----------AFNAFLKTLE 133 (367)
T ss_pred CCCCCCcceEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-----------HHHHHHHHHh
Confidence 1 12222232211 1112345555655432 233579999999988633 2355666665
Q ss_pred CcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHH
Q 047219 425 GFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDV 500 (567)
Q Consensus 425 ~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L 500 (567)
. .+..+++|.+++....+.+++.+|| ..+++..|+.++...++...+.. +..+.++.++..+.| +.+.+...
T Consensus 134 ~--~~~~~~~Il~~~~~~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~ 209 (367)
T PRK14970 134 E--PPAHAIFILATTEKHKIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSI 209 (367)
T ss_pred C--CCCceEEEEEeCCcccCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHH
Confidence 4 3456777777887889999999999 78999999999998888876654 456777777776544 33433333
Q ss_pred H
Q 047219 501 C 501 (567)
Q Consensus 501 ~ 501 (567)
+
T Consensus 210 l 210 (367)
T PRK14970 210 F 210 (367)
T ss_pred H
Confidence 3
No 159
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.6e-12 Score=145.85 Aligned_cols=178 Identities=15% Similarity=0.218 Sum_probs=126.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC-
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ- 352 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~- 352 (567)
..+.+|++|+|++.+++.|+..+.. ...++++||+||+|||||++|+++|+.+.+....
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~~--------------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~ 69 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLRM--------------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMID 69 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc--------------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCC
Confidence 3457899999999999999887752 4667889999999999999999999999653100
Q ss_pred -------------------------CcCeEEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhh
Q 047219 353 -------------------------GVPLMYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVAR 404 (567)
Q Consensus 353 -------------------------~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~ 404 (567)
..++..+++... ...+.++.+.+.+. ..++..|++|||+|.|...
T Consensus 70 ~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~- 142 (620)
T PRK14954 70 DPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA- 142 (620)
T ss_pred ccccccccCCCCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-
Confidence 012222222100 01234444444442 2344679999999999633
Q ss_pred hhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHH
Q 047219 405 DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKA 480 (567)
Q Consensus 405 q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~ 480 (567)
..+.|++.++. .+..+++|.+|+....+.+.+.+|+ ..++|..++.++....+...+.. +..+
T Consensus 143 ----------a~naLLK~LEe--Pp~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~e 209 (620)
T PRK14954 143 ----------AFNAFLKTLEE--PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDAD 209 (620)
T ss_pred ----------HHHHHHHHHhC--CCCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 34677777774 4456777777777888999999999 89999999999888888776653 5677
Q ss_pred HHHHHHHhccC
Q 047219 481 ELAELATATEE 491 (567)
Q Consensus 481 ~l~~la~~t~g 491 (567)
.++.++..+.|
T Consensus 210 al~~La~~s~G 220 (620)
T PRK14954 210 ALQLIARKAQG 220 (620)
T ss_pred HHHHHHHHhCC
Confidence 78888877765
No 160
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=1.5e-12 Score=146.67 Aligned_cols=189 Identities=22% Similarity=0.317 Sum_probs=129.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC--
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-- 351 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-- 351 (567)
..+.+|++|+|++.+++.|+..+.. ...++.+||+||+|+|||++|+++++.+.+...
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~--------------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~ 69 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAE--------------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP 69 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHh--------------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC
Confidence 3457899999999999999887752 345677899999999999999999999854211
Q ss_pred CCcC-----------------eEEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhhhHHH
Q 047219 352 QGVP-----------------LMYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSEMHEA 411 (567)
Q Consensus 352 ~~~~-----------------~~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~l~~~ 411 (567)
...+ ++.++... . ...+.++.+.+.+. ..+...|+||||+|.|...
T Consensus 70 ~~~~c~~c~~c~~i~~~~~~d~~~i~~~~----~--~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~-------- 135 (585)
T PRK14950 70 KGRPCGTCEMCRAIAEGSAVDVIEMDAAS----H--TSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTA-------- 135 (585)
T ss_pred CCCCCccCHHHHHHhcCCCCeEEEEeccc----c--CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH--------
Confidence 0111 22222210 0 11223344433332 2234679999999998632
Q ss_pred HHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHH
Q 047219 412 TRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELAT 487 (567)
Q Consensus 412 ~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~ 487 (567)
.++.|++.++. .+..++||.+++..+.+.+.+++|| ..++|..++..+....+...+.. +..+.+..++.
T Consensus 136 ---a~naLLk~LEe--pp~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~ 209 (585)
T PRK14950 136 ---AFNALLKTLEE--PPPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIAR 209 (585)
T ss_pred ---HHHHHHHHHhc--CCCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34567777774 3456788888887888889999999 78999999999988888877654 45667777777
Q ss_pred hccCCCHHHHHHHHHH
Q 047219 488 ATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 488 ~t~g~s~~dL~~L~~~ 503 (567)
.+.| +.+++.+.++.
T Consensus 210 ~s~G-dlr~al~~Lek 224 (585)
T PRK14950 210 AATG-SMRDAENLLQQ 224 (585)
T ss_pred HcCC-CHHHHHHHHHH
Confidence 7655 55555444443
No 161
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.48 E-value=1.8e-12 Score=134.53 Aligned_cols=180 Identities=20% Similarity=0.256 Sum_probs=120.2
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
..+.+|++++|++++++.++..+. .....+++|+||||||||++++++++++....+ .
T Consensus 11 yrP~~~~~~~g~~~~~~~l~~~i~---------------------~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-~ 68 (319)
T PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVK---------------------EKNMPHLLFAGPPGTGKTTAALALARELYGEDW-R 68 (319)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHh---------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-c
Confidence 344789999999999999988774 222346899999999999999999999854322 2
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHHhcC-CCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLANEL-PNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~-a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
.+++.+++...... ......+.......... .+..+|+|||+|.+.... ...|+..++.. ...+
T Consensus 69 ~~~i~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~-----------~~~L~~~le~~--~~~~ 133 (319)
T PRK00440 69 ENFLELNASDERGI--DVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA-----------QQALRRTMEMY--SQNT 133 (319)
T ss_pred cceEEeccccccch--HHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH-----------HHHHHHHHhcC--CCCC
Confidence 34555544321110 00011111111111011 234699999999986432 23445555543 3356
Q ss_pred EEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccC
Q 047219 433 VVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEE 491 (567)
Q Consensus 433 iVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g 491 (567)
.+|.++|....+.+.+.+|+ ..++|+.++.++...++..++.. +..+.++.++..+.|
T Consensus 134 ~lIl~~~~~~~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 134 RFILSCNYSSKIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred eEEEEeCCccccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 67778888888889999999 67999999999999999988764 556778888777654
No 162
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.2e-12 Score=143.54 Aligned_cols=171 Identities=24% Similarity=0.335 Sum_probs=122.1
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
+|=.|++++|+++.|.|.-- ...+.-.++-++|+||||+|||++++.||..+++ .|+.+
T Consensus 411 eDHYgm~dVKeRILEfiAV~---------------kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR------kFfRf 469 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVG---------------KLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR------KFFRF 469 (906)
T ss_pred ccccchHHHHHHHHHHHHHH---------------hhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC------ceEEE
Confidence 56689999999999987421 1223556778999999999999999999999955 46655
Q ss_pred chh------hHHh---hhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHH-----HHHHH-hhc
Q 047219 360 PLE------VVMS---KYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRIL-----SVLLR-QID 424 (567)
Q Consensus 360 ~~~------~l~s---~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl-----~~LL~-~ld 424 (567)
+.. ++.+ .|+|....++-+.++...... .+++|||||++...-|+.-..++-+++ ..|+. .++
T Consensus 470 SvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~N--PliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLd 547 (906)
T KOG2004|consen 470 SVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKVKTEN--PLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLD 547 (906)
T ss_pred eccccccHHhhcccceeeeccCChHHHHHHHhhCCCC--ceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccc
Confidence 532 2222 366776666666667666554 499999999998555543222221111 11221 111
Q ss_pred CcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHH
Q 047219 425 GFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYA 474 (567)
Q Consensus 425 ~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~ 474 (567)
---.-..|++|||.|..+.+++.|+.|+ .+|++.-+..++...|.+.|+
T Consensus 548 Vp~DLSkVLFicTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 548 VPVDLSKVLFICTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred cccchhheEEEEeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhh
Confidence 1112358999999999999999999999 899999999999999998876
No 163
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=4.2e-12 Score=132.42 Aligned_cols=181 Identities=15% Similarity=0.198 Sum_probs=128.7
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC--CCcC
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW--QGVP 355 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~--~~~~ 355 (567)
+|++|+|++.+++.+...+.. ...++.+||+||+|+|||++|+++++.+.+... ....
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~--------------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D 61 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK--------------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVD 61 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc--------------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCC
Confidence 689999999999999887742 466788999999999999999999998754311 1123
Q ss_pred eEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 356 LMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 356 ~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
+..+... .+... .-+.++.+.+.+.. .+...|++||++|.|... ..+.|++.++. ++.++
T Consensus 62 ~~~~~~~--~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~-----------a~naLLK~LEe--pp~~t 124 (313)
T PRK05564 62 IIEFKPI--NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ-----------AQNAFLKTIEE--PPKGV 124 (313)
T ss_pred eEEeccc--cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH-----------HHHHHHHHhcC--CCCCe
Confidence 3333321 11111 12335555443332 234579999999998633 44678888884 56778
Q ss_pred EEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHH
Q 047219 433 VVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRD 496 (567)
Q Consensus 433 iVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~d 496 (567)
++|.+|+.++.+.+.+++|| ..++|..|+.++....+.........+.++.++..+.|-.+..
T Consensus 125 ~~il~~~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 125 FIILLCENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYNDIKEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred EEEEEeCChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcCCCHHHHHHHHHHcCCCHHHH
Confidence 88888888899999999999 8999999999998888776655566677777777766644333
No 164
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.45 E-value=1.4e-13 Score=144.08 Aligned_cols=178 Identities=24% Similarity=0.358 Sum_probs=109.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~ 353 (567)
..+.|++|+|++++++.+.-.+. .....++||+|+||||||++|+++++.++... ..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~---------------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~ 61 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAI---------------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEG 61 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHh---------------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcc
Confidence 45789999999999988765332 12236899999999999999999999985310 001
Q ss_pred c--------------------------CeEEechhhHHhhhhchh--HHHH--H-HHHH-HHhcCCCCcEEEEcCcchhh
Q 047219 354 V--------------------------PLMYVPLEVVMSKYYGES--ERLL--G-KVFS-LANELPNGAIIFLDEVDSFA 401 (567)
Q Consensus 354 ~--------------------------~~~~i~~~~l~s~~~G~~--~~~l--~-~~f~-~A~~~a~~~ILfIDEID~L~ 401 (567)
. ++..++...-...++|.. +..+ + ..|. .....+.+++||||||+.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~ 141 (334)
T PRK13407 62 CPVNSARPEDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE 141 (334)
T ss_pred cccccCcccCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC
Confidence 1 111122111111233310 0000 0 0111 01122446899999999998
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC-CCChHHHhccceEEEecCCCH-HHHHHHHHHH
Q 047219 402 VARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ-DLDPALISRFDSMITFGLPDH-ENRQEIAAQY 473 (567)
Q Consensus 402 ~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~-~Ld~aL~sRf~~~I~i~~P~~-~eR~eIL~~~ 473 (567)
++.|..+.+.+++-...+.........+.++++|+++|+.+ .++++|++||...+.++.|.. ++|.+++...
T Consensus 142 ~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 142 DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHh
Confidence 77555544443221000001111123456899999999744 699999999998999988866 9999999874
No 165
>PHA02244 ATPase-like protein
Probab=99.44 E-value=8.6e-13 Score=138.17 Aligned_cols=140 Identities=21% Similarity=0.279 Sum_probs=90.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhH--HHH-HHHHHHHhcCCCCcEEEEc
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESE--RLL-GKVFSLANELPNGAIIFLD 395 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~--~~l-~~~f~~A~~~a~~~ILfID 395 (567)
.....+|||+||||||||++|+++|+.+ +.+|+.++...-.....|... ... ..-|..+. ..+++|+||
T Consensus 116 l~~~~PVLL~GppGtGKTtLA~aLA~~l------g~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLD 187 (383)
T PHA02244 116 VNANIPVFLKGGAGSGKNHIAEQIAEAL------DLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFID 187 (383)
T ss_pred HhcCCCEEEECCCCCCHHHHHHHHHHHh------CCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEe
Confidence 3456789999999999999999999998 667887774321122222110 011 01122222 247899999
Q ss_pred CcchhhhhhhhhhHHHHHHHHHHHHHhhc-CcccCCcEEEEEeeCCC-----------CCCChHHHhccceEEEecCCCH
Q 047219 396 EVDSFAVARDSEMHEATRRILSVLLRQID-GFEQDKKVVVIAATNRK-----------QDLDPALISRFDSMITFGLPDH 463 (567)
Q Consensus 396 EID~L~~~~q~~l~~~~~~vl~~LL~~ld-~~~~~~~viVIaaTN~~-----------~~Ld~aL~sRf~~~I~i~~P~~ 463 (567)
||+.+.+..+..++..... .++...+ ....+.++++|+|+|+. ..+++++++|| ..++++.|+
T Consensus 188 EId~a~p~vq~~L~~lLd~---r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~- 262 (383)
T PHA02244 188 EIDASIPEALIIINSAIAN---KFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDE- 262 (383)
T ss_pred CcCcCCHHHHHHHHHHhcc---CeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCc-
Confidence 9999987755554444322 1111122 22345789999999973 46899999999 789999998
Q ss_pred HHHHHHHH
Q 047219 464 ENRQEIAA 471 (567)
Q Consensus 464 ~eR~eIL~ 471 (567)
+....|+.
T Consensus 263 ~~E~~i~~ 270 (383)
T PHA02244 263 KIEHLISN 270 (383)
T ss_pred HHHHHHhh
Confidence 43344443
No 166
>PRK06620 hypothetical protein; Validated
Probab=99.43 E-value=4.1e-12 Score=125.48 Aligned_cols=140 Identities=16% Similarity=0.299 Sum_probs=93.9
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~ 402 (567)
.+++||||||||||+|++++++... . ..++..... ...+ .. ..+|+|||||.+.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~------~--~~~~~~~~~-----------~~~~----~~--~d~lliDdi~~~~- 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN------A--YIIKDIFFN-----------EEIL----EK--YNAFIIEDIENWQ- 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC------C--EEcchhhhc-----------hhHH----hc--CCEEEEeccccch-
Confidence 6799999999999999999998762 2 222211110 0111 11 3699999999551
Q ss_pred hhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCC--CChHHHhccce--EEEecCCCHHHHHHHHHHHHHh--
Q 047219 403 ARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQD--LDPALISRFDS--MITFGLPDHENRQEIAAQYAKH-- 476 (567)
Q Consensus 403 ~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~--Ld~aL~sRf~~--~I~i~~P~~~eR~eIL~~~~~~-- 476 (567)
+ ..|...++.+...+..++|+++..+.. + ++|++||.. ++.++.|+.+++..+++..+..
T Consensus 99 ---~----------~~lf~l~N~~~e~g~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~ 164 (214)
T PRK06620 99 ---E----------PALLHIFNIINEKQKYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISS 164 (214)
T ss_pred ---H----------HHHHHHHHHHHhcCCEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcC
Confidence 1 123333333344566788888765554 6 899999942 7999999999999999988763
Q ss_pred --hCHHHHHHHHHhccCCCHHHHHHHHHH
Q 047219 477 --LTKAELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 477 --~~~~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
++++.++.++....+ +.+.+..+++.
T Consensus 165 l~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 165 VTISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred CCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 567788888887654 44455444444
No 167
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.43 E-value=7.3e-12 Score=141.14 Aligned_cols=186 Identities=19% Similarity=0.301 Sum_probs=131.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC---
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW--- 351 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~--- 351 (567)
.+.+|++|+|++.+++.|...+.. ...++.+|||||+|+|||++|+++|+.+.+...
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~--------------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~ 71 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIAT--------------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTAD 71 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHc--------------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 447899999999999999888752 456778999999999999999999999853210
Q ss_pred ----------------CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHH
Q 047219 352 ----------------QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEAT 412 (567)
Q Consensus 352 ----------------~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~ 412 (567)
...++..+++... .....++.+.+.+.. .+...|++|||+|.|...
T Consensus 72 ~~~Cg~C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~--------- 136 (614)
T PRK14971 72 GEACNECESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA--------- 136 (614)
T ss_pred CCCCCcchHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH---------
Confidence 0123333333210 112345555554432 234579999999999633
Q ss_pred HHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHh
Q 047219 413 RRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATA 488 (567)
Q Consensus 413 ~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~ 488 (567)
..+.|+..++. .+..+++|++|+....+.+.|++|| ..++|..++.++....+...+.. +..+.+..++..
T Consensus 137 --a~naLLK~LEe--pp~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~ 211 (614)
T PRK14971 137 --AFNAFLKTLEE--PPSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQK 211 (614)
T ss_pred --HHHHHHHHHhC--CCCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34677787774 4567888888887889999999999 88999999999988888876654 345567777777
Q ss_pred ccCCCHHHHHHHH
Q 047219 489 TEEMSGRDIRDVC 501 (567)
Q Consensus 489 t~g~s~~dL~~L~ 501 (567)
+.| +.+++..++
T Consensus 212 s~g-dlr~al~~L 223 (614)
T PRK14971 212 ADG-GMRDALSIF 223 (614)
T ss_pred cCC-CHHHHHHHH
Confidence 654 444444433
No 168
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=9.8e-12 Score=131.35 Aligned_cols=194 Identities=16% Similarity=0.160 Sum_probs=128.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC---
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP--- 350 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~--- 350 (567)
..+..+++|+|++++++.+...+.. .+.+..+||+||+|+|||++|+.+++.+.+..
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~--------------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~ 76 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYRE--------------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPA 76 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHc--------------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccc
Confidence 3456899999999999999987752 56678899999999999999999999986521
Q ss_pred CC----CcCeEEe-chhhHHhh----h--h-------------chhHHHHHHHHHHHh---cCCCCcEEEEcCcchhhhh
Q 047219 351 WQ----GVPLMYV-PLEVVMSK----Y--Y-------------GESERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVA 403 (567)
Q Consensus 351 ~~----~~~~~~i-~~~~l~s~----~--~-------------G~~~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~ 403 (567)
.. ..+|... .|..+... + + .-.-+.++.+.+... ......|++|||+|.|...
T Consensus 77 ~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~ 156 (351)
T PRK09112 77 EAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN 156 (351)
T ss_pred cCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH
Confidence 00 0111000 01111000 0 0 001122333322222 2334579999999999643
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh--hCHHH
Q 047219 404 RDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH--LTKAE 481 (567)
Q Consensus 404 ~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~--~~~~~ 481 (567)
..+.|++.++. .+.++++|..|+.++.+.+.+++|| ..+.|+.|+.++..+++...... +....
T Consensus 157 -----------aanaLLk~LEE--pp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~ 222 (351)
T PRK09112 157 -----------AANAILKTLEE--PPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQGSDGEI 222 (351)
T ss_pred -----------HHHHHHHHHhc--CCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccCCCHHH
Confidence 34667787774 4567777777888899999999999 89999999999999999875432 33566
Q ss_pred HHHHHHhccCCCHHHHHHHHH
Q 047219 482 LAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 482 l~~la~~t~g~s~~dL~~L~~ 502 (567)
+..++..+.|- ++....++.
T Consensus 223 ~~~i~~~s~G~-pr~Al~ll~ 242 (351)
T PRK09112 223 TEALLQRSKGS-VRKALLLLN 242 (351)
T ss_pred HHHHHHHcCCC-HHHHHHHHh
Confidence 77777776664 444344443
No 169
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=6.1e-12 Score=133.60 Aligned_cols=192 Identities=17% Similarity=0.141 Sum_probs=128.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC-
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG- 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~- 353 (567)
.+.++++|+|++.+++.+.+.+.. .+.+..+||+||+|+||+++|.++|+.+.+....+
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~--------------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~ 73 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRS--------------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGG 73 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHc--------------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCC
Confidence 456889999999999999987752 46788899999999999999999999985432100
Q ss_pred c---------------------------CeEEechh--hHHhhhhc-hhHHHHHHHHHHHhc---CCCCcEEEEcCcchh
Q 047219 354 V---------------------------PLMYVPLE--VVMSKYYG-ESERLLGKVFSLANE---LPNGAIIFLDEVDSF 400 (567)
Q Consensus 354 ~---------------------------~~~~i~~~--~l~s~~~G-~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L 400 (567)
. .+..+... +-..+... -.-+.++.+.+.+.. ...+.|++|||+|.|
T Consensus 74 ~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m 153 (365)
T PRK07471 74 DGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM 153 (365)
T ss_pred CccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc
Confidence 0 11111110 00000000 012334444443332 233579999999998
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHH
Q 047219 401 AVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKA 480 (567)
Q Consensus 401 ~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~ 480 (567)
... ..+.|++.++. .+.++++|.+|+.++.+.+.+++|| ..+.|..|+.++-.+.+..........
T Consensus 154 ~~~-----------aanaLLK~LEe--pp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~~~~~ 219 (365)
T PRK07471 154 NAN-----------AANALLKVLEE--PPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPDLPDD 219 (365)
T ss_pred CHH-----------HHHHHHHHHhc--CCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhcccCCHH
Confidence 633 44677777773 4567888889999999999999999 899999999999998888765434444
Q ss_pred HHHHHHHhccCCCHHHHHHHH
Q 047219 481 ELAELATATEEMSGRDIRDVC 501 (567)
Q Consensus 481 ~l~~la~~t~g~s~~dL~~L~ 501 (567)
.+..++..+.| ++.....++
T Consensus 220 ~~~~l~~~s~G-sp~~Al~ll 239 (365)
T PRK07471 220 PRAALAALAEG-SVGRALRLA 239 (365)
T ss_pred HHHHHHHHcCC-CHHHHHHHh
Confidence 44556666555 344333333
No 170
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.40 E-value=7.8e-13 Score=137.02 Aligned_cols=147 Identities=21% Similarity=0.248 Sum_probs=100.4
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhh--hhchhHHH----------HHHHHHHHhcCCC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSK--YYGESERL----------LGKVFSLANELPN 388 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~--~~G~~~~~----------l~~~f~~A~~~a~ 388 (567)
..+++||.||||||||++++.+|+.+ +.+++.++++...+. ++|...-. ....+..|.. .
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l------~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~--~ 134 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARL------NWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ--H 134 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHH------CCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh--C
Confidence 35789999999999999999999999 778888887665543 55542110 0112333333 2
Q ss_pred CcEEEEcCcchhhhhhhhhhHHHHHH-HHHHHHHhhcCcccCCcEEEEEeeCCCC------------CCChHHHhccceE
Q 047219 389 GAIIFLDEVDSFAVARDSEMHEATRR-ILSVLLRQIDGFEQDKKVVVIAATNRKQ------------DLDPALISRFDSM 455 (567)
Q Consensus 389 ~~ILfIDEID~L~~~~q~~l~~~~~~-vl~~LL~~ld~~~~~~~viVIaaTN~~~------------~Ld~aL~sRf~~~ 455 (567)
+++|++||||...++.+..+...++. -.-.+......+....+++||||+|+.+ .++++++.||..+
T Consensus 135 g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~ 214 (327)
T TIGR01650 135 NVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIV 214 (327)
T ss_pred CeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeE
Confidence 57899999999877755544333321 0000011112223456899999999854 4799999999667
Q ss_pred EEecCCCHHHHHHHHHHHHH
Q 047219 456 ITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 456 I~i~~P~~~eR~eIL~~~~~ 475 (567)
+.++.|+.++..+|+.....
T Consensus 215 ~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 215 TTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eeCCCCCHHHHHHHHHhhcc
Confidence 78999999999999987653
No 171
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.40 E-value=9.3e-12 Score=120.08 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=103.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCC-CCCCcCe-----------------EEechhhHHhhhhchhHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAM-PWQGVPL-----------------MYVPLEVVMSKYYGESERLLGKVF 380 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~-~~~~~~~-----------------~~i~~~~l~s~~~G~~~~~l~~~f 380 (567)
...+..+||+||+|+|||++|+.+++.+... ...+.+| ..+.... ... ..+.++.+.
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~~--~~~~i~~i~ 85 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QSI--KVDQVRELV 85 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---CcC--CHHHHHHHH
Confidence 4567889999999999999999999998542 1111111 1111110 001 123444455
Q ss_pred HHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEE
Q 047219 381 SLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMIT 457 (567)
Q Consensus 381 ~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~ 457 (567)
+.+.. .+...+++|||+|.|... ..+.|+..++. .+..+.+|.+||.+..+.+++++|+ ..++
T Consensus 86 ~~~~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~--~~~~~~~il~~~~~~~l~~~i~sr~-~~~~ 151 (188)
T TIGR00678 86 EFLSRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEE--PPPNTLFILITPSPEKLLPTIRSRC-QVLP 151 (188)
T ss_pred HHHccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcC--CCCCeEEEEEECChHhChHHHHhhc-EEee
Confidence 54443 234579999999998643 33567777775 4456777777877789999999999 7999
Q ss_pred ecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccC
Q 047219 458 FGLPDHENRQEIAAQYAKHLTKAELAELATATEE 491 (567)
Q Consensus 458 i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g 491 (567)
|..|+.++..+++... .+..+.+..++..+.|
T Consensus 152 ~~~~~~~~~~~~l~~~--gi~~~~~~~i~~~~~g 183 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ--GISEEAAELLLALAGG 183 (188)
T ss_pred CCCCCHHHHHHHHHHc--CCCHHHHHHHHHHcCC
Confidence 9999999998888776 3555566666655544
No 172
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=1.4e-11 Score=129.46 Aligned_cols=170 Identities=18% Similarity=0.242 Sum_probs=117.6
Q ss_pred CcccccC-cHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCCcC
Q 047219 278 SWENIAG-YDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQGVP 355 (567)
Q Consensus 278 ~~~dIiG-~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~~~ 355 (567)
.|+.|.| ++.+++.++..+.. .+.++.+||+||+|+||+++|+++++.+.... ..+.+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~--------------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~ 62 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK--------------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEP 62 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc--------------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC
Confidence 4888888 88899988887742 56788899999999999999999999985431 11111
Q ss_pred -----------------eEEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhhhHHHHHHH
Q 047219 356 -----------------LMYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSEMHEATRRI 415 (567)
Q Consensus 356 -----------------~~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~l~~~~~~v 415 (567)
+..+..+ ++.. .-+.++.+.+.+. ..+...|++|||+|.|... .
T Consensus 63 cg~C~~c~~~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~-----------a 126 (329)
T PRK08058 63 CGTCTNCKRIDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS-----------A 126 (329)
T ss_pred CCcCHHHHHHhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH-----------H
Confidence 2222111 0000 1234455544433 2334579999999998633 4
Q ss_pred HHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHh
Q 047219 416 LSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATA 488 (567)
Q Consensus 416 l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~ 488 (567)
.+.|++.++. ++.++++|.+|+.+..+.+.++||| ..++|..|+.++..+.+... .+.......++..
T Consensus 127 ~NaLLK~LEE--Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~~--gi~~~~~~~l~~~ 194 (329)
T PRK08058 127 ANSLLKFLEE--PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQEE--GISESLATLLAGL 194 (329)
T ss_pred HHHHHHHhcC--CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHHc--CCChHHHHHHHHH
Confidence 5778888884 6778888889988899999999999 99999999999887777642 3444433334433
No 173
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.38 E-value=2.6e-12 Score=134.84 Aligned_cols=175 Identities=23% Similarity=0.358 Sum_probs=107.4
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC------CC
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM------PW 351 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~------~~ 351 (567)
.|..|+|+++.|..+.-.+. .+...+++|.|+||+|||+++++++..+... ++
T Consensus 2 pf~~ivgq~~~~~al~~~~~---------------------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~ 60 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVI---------------------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPF 60 (337)
T ss_pred CccccccHHHHHHHHHHHhc---------------------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCC
Confidence 47889999999988755442 2335689999999999999999999887421 11
Q ss_pred C---C-------------------------cCeEEechhhHHhhhhchhH--HHHH---HHHH-HHhcCCCCcEEEEcCc
Q 047219 352 Q---G-------------------------VPLMYVPLEVVMSKYYGESE--RLLG---KVFS-LANELPNGAIIFLDEV 397 (567)
Q Consensus 352 ~---~-------------------------~~~~~i~~~~l~s~~~G~~~--~~l~---~~f~-~A~~~a~~~ILfIDEI 397 (567)
. . .++..++.......++|... ..+. ..|. .....+.+++||||||
T Consensus 61 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi 140 (337)
T TIGR02030 61 NSSPSDPEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEV 140 (337)
T ss_pred CCCCCCccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecCh
Confidence 0 0 01111111111112333211 0000 0001 0112244699999999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC-CCChHHHhccceEEEecCCCH-HHHHHHHHHH
Q 047219 398 DSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ-DLDPALISRFDSMITFGLPDH-ENRQEIAAQY 473 (567)
Q Consensus 398 D~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~-~Ld~aL~sRf~~~I~i~~P~~-~eR~eIL~~~ 473 (567)
+.|.++.|..+.+++++-...+.........+.++++|+++|..+ .|+++|++||...+.++.|.. ++|.+|++..
T Consensus 141 ~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~ 218 (337)
T TIGR02030 141 NLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERR 218 (337)
T ss_pred HhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhh
Confidence 999877666555544321000111111122346789999999755 799999999998999998865 8889998873
No 174
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.38 E-value=5.5e-13 Score=122.41 Aligned_cols=130 Identities=22% Similarity=0.411 Sum_probs=87.2
Q ss_pred cCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh
Q 047219 283 AGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE 362 (567)
Q Consensus 283 iG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~ 362 (567)
+|.+..++++++.+... .....+|||+|++||||+++|++||...... ..+++.+++.
T Consensus 1 vG~S~~~~~l~~~l~~~-------------------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~---~~~~~~~~~~ 58 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERL-------------------AKSSSPVLITGEPGTGKSLLARALHRYSGRA---NGPFIVIDCA 58 (138)
T ss_dssp --SCHHHHHHHHHHHHH-------------------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTC---CS-CCCCCHH
T ss_pred CCCCHHHHHHHHHHHHH-------------------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCcc---CCCeEEechh
Confidence 58889999999988765 5677899999999999999999999988643 3345555555
Q ss_pred hHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC--
Q 047219 363 VVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR-- 440 (567)
Q Consensus 363 ~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~-- 440 (567)
.+. .++++.+ .+++|||+|||.|....|..+ +..+... ...++++|+++..
T Consensus 59 ~~~-----------~~~l~~a----~~gtL~l~~i~~L~~~~Q~~L-----------~~~l~~~-~~~~~RlI~ss~~~l 111 (138)
T PF14532_consen 59 SLP-----------AELLEQA----KGGTLYLKNIDRLSPEAQRRL-----------LDLLKRQ-ERSNVRLIASSSQDL 111 (138)
T ss_dssp CTC-----------HHHHHHC----TTSEEEEECGCCS-HHHHHHH-----------HHHHHHC-TTTTSEEEEEECC-C
T ss_pred hCc-----------HHHHHHc----CCCEEEECChHHCCHHHHHHH-----------HHHHHhc-CCCCeEEEEEeCCCH
Confidence 433 2244443 379999999999986644333 2222222 2456788888864
Q ss_pred -----CCCCChHHHhccceEEEecCCC
Q 047219 441 -----KQDLDPALISRFDSMITFGLPD 462 (567)
Q Consensus 441 -----~~~Ld~aL~sRf~~~I~i~~P~ 462 (567)
.+.++++|++|| ..+.+.+|+
T Consensus 112 ~~l~~~~~~~~~L~~~l-~~~~i~lPp 137 (138)
T PF14532_consen 112 EELVEEGRFSPDLYYRL-SQLEIHLPP 137 (138)
T ss_dssp CCHHHHSTHHHHHHHHC-STCEEEE--
T ss_pred HHHhhccchhHHHHHHh-CCCEEeCCC
Confidence 235889999999 445566565
No 175
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.38 E-value=2e-12 Score=146.76 Aligned_cols=175 Identities=26% Similarity=0.359 Sum_probs=112.0
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC------C-
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM------P- 350 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~------~- 350 (567)
.|.+|+|++.++..+.-.+. .....+|||+|++|||||++|++|++.+... +
T Consensus 2 pf~~ivGq~~~~~al~~~av---------------------~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~ 60 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAV---------------------DPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPF 60 (633)
T ss_pred CcchhcChHHHHHHHHHHhh---------------------CCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcC
Confidence 47899999999977754443 2223579999999999999999999998410 0
Q ss_pred ----------------------CCCcCeEEechhhHHhhhhchh--HHHHH---HHH-HHHhcCCCCcEEEEcCcchhhh
Q 047219 351 ----------------------WQGVPLMYVPLEVVMSKYYGES--ERLLG---KVF-SLANELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 351 ----------------------~~~~~~~~i~~~~l~s~~~G~~--~~~l~---~~f-~~A~~~a~~~ILfIDEID~L~~ 402 (567)
....+|+.++++.....++|.. +..+. ..+ ......+.++|||||||+.|..
T Consensus 61 ~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~ 140 (633)
T TIGR02442 61 SCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD 140 (633)
T ss_pred CCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH
Confidence 0135677777766666666642 11110 000 0111234568999999999987
Q ss_pred hhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCC-CCCChHHHhccceEEEecCC-CHHHHHHHHHHH
Q 047219 403 ARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRK-QDLDPALISRFDSMITFGLP-DHENRQEIAAQY 473 (567)
Q Consensus 403 ~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~-~~Ld~aL~sRf~~~I~i~~P-~~~eR~eIL~~~ 473 (567)
..|..+...+++-...+.........+.++++|+|+|+. +.|+++|++||+..+.+..+ +.+++.+++...
T Consensus 141 ~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 141 HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 755554443322100011111112334679999999974 47999999999888888766 467777887653
No 176
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.38 E-value=1.3e-11 Score=111.04 Aligned_cols=125 Identities=36% Similarity=0.543 Sum_probs=80.6
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHH---HHHHHHHHhcCCCCcEEEEcC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERL---LGKVFSLANELPNGAIIFLDE 396 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~---l~~~f~~A~~~a~~~ILfIDE 396 (567)
....+++|+||||||||++++.+++.+... +.+++++++.............. ....+... ....+++|+|||
T Consensus 17 ~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~lilDe 92 (151)
T cd00009 17 PPPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGLVVAELFGHFLVRLLFELA-EKAKPGVLFIDE 92 (151)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhhcC---CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhh-ccCCCeEEEEeC
Confidence 356789999999999999999999998532 45677887776555432221111 01111122 223468999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHhhcCcc----cCCcEEEEEeeCCCC--CCChHHHhccceEEEec
Q 047219 397 VDSFAVARDSEMHEATRRILSVLLRQIDGFE----QDKKVVVIAATNRKQ--DLDPALISRFDSMITFG 459 (567)
Q Consensus 397 ID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~----~~~~viVIaaTN~~~--~Ld~aL~sRf~~~I~i~ 459 (567)
++.+..... ..++..+.... ...++.+|+++|... .+++.+.+||+..+.++
T Consensus 93 ~~~~~~~~~-----------~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 93 IDSLSRGAQ-----------NALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred hhhhhHHHH-----------HHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 998833211 22222222221 246789999998877 78899999997666654
No 177
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.37 E-value=3.3e-11 Score=117.90 Aligned_cols=194 Identities=25% Similarity=0.336 Sum_probs=139.5
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
+..+.+.+.+|+|.+.+++.+.+.-+.+ ....+.++|||||..|||||++++|+.+++...
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F-----------------~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-- 112 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQF-----------------AEGLPANNVLLWGARGTGKSSLVKALLNEYADE-- 112 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHH-----------------HcCCcccceEEecCCCCChHHHHHHHHHHHHhc--
Confidence 4556789999999999999887755443 236778999999999999999999999999765
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc--ccC
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF--EQD 429 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~--~~~ 429 (567)
+..++.|+-+++.. +..+++..+......|||+|++-.=. .+ .....|...+++- ..+
T Consensus 113 -glrLVEV~k~dl~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~---gd-------~~yK~LKs~LeG~ve~rP 172 (287)
T COG2607 113 -GLRLVEVDKEDLAT---------LPDLVELLRARPEKFILFCDDLSFEE---GD-------DAYKALKSALEGGVEGRP 172 (287)
T ss_pred -CCeEEEEcHHHHhh---------HHHHHHHHhcCCceEEEEecCCCCCC---Cc-------hHHHHHHHHhcCCcccCC
Confidence 56689998887754 45567777776667999999984311 11 1122333444443 357
Q ss_pred CcEEEEEeeCCCCCCC--------------h--------HHHhccceEEEecCCCHHHHHHHHHHHHHhhC----HH---
Q 047219 430 KKVVVIAATNRKQDLD--------------P--------ALISRFDSMITFGLPDHENRQEIAAQYAKHLT----KA--- 480 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld--------------~--------aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~----~~--- 480 (567)
.+|+|.+|+|+-..++ + .|-.||+..+.|.+++.++...|+..+++++. .+
T Consensus 173 ~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~ 252 (287)
T COG2607 173 ANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELH 252 (287)
T ss_pred CeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 7999999999833222 1 23349999999999999999999999998753 22
Q ss_pred -HHHHHHHhccCCCHHHHHHHHHHH
Q 047219 481 -ELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 481 -~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
...+.+..-.|-||+--.+.+++.
T Consensus 253 ~eAl~WAt~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 253 AEALQWATTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HHHHHHHHhcCCCccHhHHHHHHHH
Confidence 233445555567777666665543
No 178
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=4.9e-11 Score=124.32 Aligned_cols=189 Identities=15% Similarity=0.210 Sum_probs=126.7
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-------
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP------- 350 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~------- 350 (567)
.|++|+|++.+++.+.+.+.. .+.+..+||+||+|+||+++|.++++.+.+..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~--------------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~ 61 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ--------------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIR 61 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh--------------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHh
Confidence 589999999999999998853 46688999999999999999999999985431
Q ss_pred -----CCCcCeEEechhhHH-hh--------hhc-------h-hHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhh
Q 047219 351 -----WQGVPLMYVPLEVVM-SK--------YYG-------E-SERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARD 405 (567)
Q Consensus 351 -----~~~~~~~~i~~~~l~-s~--------~~G-------~-~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q 405 (567)
...-.+..+...... ++ ..| . .-+.++.+.+.+.. .+...|++||++|.|...
T Consensus 62 ~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~-- 139 (314)
T PRK07399 62 RRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA-- 139 (314)
T ss_pred cccccCCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH--
Confidence 011112222221000 00 001 0 01234455444332 345689999999999633
Q ss_pred hhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhC-HHHHHH
Q 047219 406 SEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLT-KAELAE 484 (567)
Q Consensus 406 ~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~-~~~l~~ 484 (567)
..+.||+.++. .+ ++++|..|+.++.+-+.++||| ..++|..++.++..+.+......-. ......
T Consensus 140 ---------aaNaLLK~LEE--Pp-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~ 206 (314)
T PRK07399 140 ---------AANALLKTLEE--PG-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEILNINFPE 206 (314)
T ss_pred ---------HHHHHHHHHhC--CC-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhccccchhHHHH
Confidence 44778888874 33 6678888888999999999999 8999999999999988887643211 122456
Q ss_pred HHHhccCCCHHHHHHHHH
Q 047219 485 LATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 485 la~~t~g~s~~dL~~L~~ 502 (567)
++....| +++....+++
T Consensus 207 l~~~a~G-s~~~al~~l~ 223 (314)
T PRK07399 207 LLALAQG-SPGAAIANIE 223 (314)
T ss_pred HHHHcCC-CHHHHHHHHH
Confidence 6666555 4444444444
No 179
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.33 E-value=1.5e-12 Score=144.21 Aligned_cols=181 Identities=19% Similarity=0.224 Sum_probs=105.4
Q ss_pred cccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC---cCeE
Q 047219 281 NIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG---VPLM 357 (567)
Q Consensus 281 dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~---~~~~ 357 (567)
+|.|++.+|..+.-++..--. +.. ..........+|||+|+||||||++|+++|+.+.+..|.. ..+.
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~--------~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~ 274 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNL--------PDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAV 274 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-ccc--------CCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcC
Confidence 588999987766544321100 000 0000123445899999999999999999999886542221 1111
Q ss_pred EechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEe
Q 047219 358 YVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAA 437 (567)
Q Consensus 358 ~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaa 437 (567)
.+....+.....|+.. +-..+...+.+++++|||++.|....|..+++++++..-.+.+.......+.++.||||
T Consensus 275 ~l~~~~~~~~~~g~~~-----~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa 349 (509)
T smart00350 275 GLTAAVTRDPETREFT-----LEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAA 349 (509)
T ss_pred CccccceEccCcceEE-----ecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEE
Confidence 1111111111111100 00011233457999999999998776665555442200000011111123568999999
Q ss_pred eCCCC-------------CCChHHHhccceEEEe-cCCCHHHHHHHHHHHHH
Q 047219 438 TNRKQ-------------DLDPALISRFDSMITF-GLPDHENRQEIAAQYAK 475 (567)
Q Consensus 438 TN~~~-------------~Ld~aL~sRf~~~I~i-~~P~~~eR~eIL~~~~~ 475 (567)
+|+.+ .|++++++|||..+.+ +.|+.+...+|.+..+.
T Consensus 350 ~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 350 ANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred eCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99842 5999999999886655 78999999999887653
No 180
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=9.1e-11 Score=124.59 Aligned_cols=174 Identities=24% Similarity=0.368 Sum_probs=123.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
+.+.-+.+.+.+++++++...+...+. ...|.+++++|+||||||.+++.+.+++....- ..
T Consensus 12 ~~~iP~~l~~Re~ei~~l~~~l~~~~~-----------------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-~~ 73 (366)
T COG1474 12 EDYIPEELPHREEEINQLASFLAPALR-----------------GERPSNIIIYGPTGTGKTATVKFVMEELEESSA-NV 73 (366)
T ss_pred CCCCcccccccHHHHHHHHHHHHHHhc-----------------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-cC
Confidence 334445699999999999987654322 456667999999999999999999999854310 22
Q ss_pred CeEEechhhHHhhh------h---------ch-hHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHH
Q 047219 355 PLMYVPLEVVMSKY------Y---------GE-SERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSV 418 (567)
Q Consensus 355 ~~~~i~~~~l~s~~------~---------G~-~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~ 418 (567)
.+++++|....+.+ + |. ....+..+++.........|++|||+|.|..+.+ +++..
T Consensus 74 ~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~ 145 (366)
T COG1474 74 EVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYS 145 (366)
T ss_pred ceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHH
Confidence 26777775433221 1 11 2223334444444444468999999999976643 45667
Q ss_pred HHHhhcCcccCCcEEEEEeeCCC---CCCChHHHhcc-ceEEEecCCCHHHHHHHHHHHHHh
Q 047219 419 LLRQIDGFEQDKKVVVIAATNRK---QDLDPALISRF-DSMITFGLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 419 LL~~ld~~~~~~~viVIaaTN~~---~~Ld~aL~sRf-~~~I~i~~P~~~eR~eIL~~~~~~ 476 (567)
|++..+.. ..++.+|+.+|.. +.+++.+.++| ...|.|++++.+|..+|+...++.
T Consensus 146 L~r~~~~~--~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 146 LLRAPGEN--KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred HHhhcccc--ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 77766644 5678999999874 46899999987 347899999999999999998874
No 181
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.31 E-value=1e-11 Score=130.63 Aligned_cols=179 Identities=22% Similarity=0.329 Sum_probs=121.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC-CCCCc
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM-PWQGV 354 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~-~~~~~ 354 (567)
.+.|.-++|++..+..|.-... ...-.++||.|+.|||||+++|+|+..++.. ...++
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av---------------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc 71 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAV---------------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGC 71 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhc---------------------ccccceeEEecCCCccHHHHHHHHHHhCCccceecCC
Confidence 4678889999998877653322 3345789999999999999999999998643 11122
Q ss_pred C---------------------------------eEEechhhHHhhhhch--hHHHHH---HHHH-HHhcCCCCcEEEEc
Q 047219 355 P---------------------------------LMYVPLEVVMSKYYGE--SERLLG---KVFS-LANELPNGAIIFLD 395 (567)
Q Consensus 355 ~---------------------------------~~~i~~~~l~s~~~G~--~~~~l~---~~f~-~A~~~a~~~ILfID 395 (567)
+ ++.++.......++|. .++.+. ..|+ .....++.+||++|
T Consensus 72 ~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvD 151 (423)
T COG1239 72 PFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVD 151 (423)
T ss_pred CCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEe
Confidence 1 1111111111112222 111111 0111 01123457999999
Q ss_pred CcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC-CCCCChHHHhccceEEEecCC-CHHHHHHHHHHH
Q 047219 396 EVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR-KQDLDPALISRFDSMITFGLP-DHENRQEIAAQY 473 (567)
Q Consensus 396 EID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~-~~~Ld~aL~sRf~~~I~i~~P-~~~eR~eIL~~~ 473 (567)
|+..|....++.++.+...-.+........+..+.++++|+|+|+ .+.|.+.|+.||...+.+..| +.++|.+|++..
T Consensus 152 EvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~ 231 (423)
T COG1239 152 EVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRR 231 (423)
T ss_pred ccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHH
Confidence 999999888877777766655555555555667889999999998 457999999999999999766 789999999986
Q ss_pred HH
Q 047219 474 AK 475 (567)
Q Consensus 474 ~~ 475 (567)
..
T Consensus 232 ~~ 233 (423)
T COG1239 232 LA 233 (423)
T ss_pred HH
Confidence 65
No 182
>PRK09087 hypothetical protein; Validated
Probab=99.29 E-value=5.5e-11 Score=118.45 Aligned_cols=142 Identities=17% Similarity=0.265 Sum_probs=96.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFA 401 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~ 401 (567)
...++|+||+|+|||||++++++.. .+.+++...+...+ +.... ..+|+|||++.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~--------~~~~i~~~~~~~~~-----------~~~~~----~~~l~iDDi~~~~ 100 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS--------DALLIHPNEIGSDA-----------ANAAA----EGPVLIEDIDAGG 100 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc--------CCEEecHHHcchHH-----------HHhhh----cCeEEEECCCCCC
Confidence 3459999999999999999999875 23466654333221 11111 2589999999874
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCC---CChHHHhccc--eEEEecCCCHHHHHHHHHHHHHh
Q 047219 402 VARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQD---LDPALISRFD--SMITFGLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 402 ~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~---Ld~aL~sRf~--~~I~i~~P~~~eR~eIL~~~~~~ 476 (567)
.. + ..|+..++.....+..+||+++..+.. ..++|++||. ..++++.|+.++|.++++.+++.
T Consensus 101 ~~-~-----------~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~ 168 (226)
T PRK09087 101 FD-E-----------TGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFAD 168 (226)
T ss_pred CC-H-----------HHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHH
Confidence 22 1 123344443334456677776655443 3689999995 58999999999999999998875
Q ss_pred ----hCHHHHHHHHHhccCCCHHHHHHHHH
Q 047219 477 ----LTKAELAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 477 ----~~~~~l~~la~~t~g~s~~dL~~L~~ 502 (567)
++++.++.++.... ++++.+..
T Consensus 169 ~~~~l~~ev~~~La~~~~----r~~~~l~~ 194 (226)
T PRK09087 169 RQLYVDPHVVYYLVSRME----RSLFAAQT 194 (226)
T ss_pred cCCCCCHHHHHHHHHHhh----hhHHHHHH
Confidence 56777888887765 34444443
No 183
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.29 E-value=3.2e-11 Score=125.32 Aligned_cols=157 Identities=20% Similarity=0.264 Sum_probs=109.3
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC--------
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-------- 351 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-------- 351 (567)
+++.|.+.....+...+... .+.+..+||+||||||||++|.++|+.+.....
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~-------------------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~ 61 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES-------------------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGH 61 (325)
T ss_pred CCcccchhHHHHHHHHHHhc-------------------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccc
Confidence 35778888888777766532 345557999999999999999999999964321
Q ss_pred ----------CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcC---CCCcEEEEcCcchhhhhhhhhhHHHHHHHHHH
Q 047219 352 ----------QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANEL---PNGAIIFLDEVDSFAVARDSEMHEATRRILSV 418 (567)
Q Consensus 352 ----------~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~---a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~ 418 (567)
...++..++.++....- .....++.+-+..... .+..|++|||+|.|... ..+.
T Consensus 62 ~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-----------A~na 128 (325)
T COG0470 62 CRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-----------AANA 128 (325)
T ss_pred hhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-----------HHHH
Confidence 12356666665543321 1223444444433332 34689999999999753 4467
Q ss_pred HHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHH
Q 047219 419 LLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAA 471 (567)
Q Consensus 419 LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~ 471 (567)
+++.++ ..+.+.++|.+||.+..+-+.+++|| ..+.|..|+........+
T Consensus 129 llk~lE--ep~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 129 LLKTLE--EPPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred HHHHhc--cCCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 777777 46788999999999999999999999 889998765554444333
No 184
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.29 E-value=5.9e-13 Score=129.29 Aligned_cols=147 Identities=23% Similarity=0.378 Sum_probs=68.9
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-------
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP------- 350 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~------- 350 (567)
.|++|+|++.+|+.+.-.+. ...++||+||||||||++|+.++..++.-.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~ 57 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------------------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEV 57 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------------------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------------------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhh
Confidence 37899999999998876542 257999999999999999999998875210
Q ss_pred ---------------CCCcCeEEechhhHHhhhhchhHH-HHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHH
Q 047219 351 ---------------WQGVPLMYVPLEVVMSKYYGESER-LLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRR 414 (567)
Q Consensus 351 ---------------~~~~~~~~i~~~~l~s~~~G~~~~-~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~ 414 (567)
....+|.....+.-...++|.... .-+. ...+.++||||||+..+...
T Consensus 58 ~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGe-----islAh~GVLflDE~~ef~~~----------- 121 (206)
T PF01078_consen 58 SKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGE-----ISLAHRGVLFLDELNEFDRS----------- 121 (206)
T ss_dssp --S-TT---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-C-----GGGGTTSEEEECETTTS-HH-----------
T ss_pred ccccccccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCH-----HHHhcCCEEEechhhhcCHH-----------
Confidence 001122222222112222222110 0011 13445799999999988533
Q ss_pred HHHHHHHhhcC-----------cccCCcEEEEEeeCC-----------------------CCCCChHHHhccceEEEecC
Q 047219 415 ILSVLLRQIDG-----------FEQDKKVVVIAATNR-----------------------KQDLDPALISRFDSMITFGL 460 (567)
Q Consensus 415 vl~~LL~~ld~-----------~~~~~~viVIaaTN~-----------------------~~~Ld~aL~sRf~~~I~i~~ 460 (567)
+++.|+.-++. ...+.++.+|+|+|+ ...+...|+.|||..+.++.
T Consensus 122 vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~ 201 (206)
T PF01078_consen 122 VLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPR 201 (206)
T ss_dssp HHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S-------------------------------------------
T ss_pred HHHHHHHHHHCCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44444444432 234678999999997 22456667778877666655
Q ss_pred CCH
Q 047219 461 PDH 463 (567)
Q Consensus 461 P~~ 463 (567)
.+.
T Consensus 202 ~~~ 204 (206)
T PF01078_consen 202 VSY 204 (206)
T ss_dssp ---
T ss_pred ccc
Confidence 443
No 185
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.28 E-value=3.1e-11 Score=117.47 Aligned_cols=189 Identities=16% Similarity=0.227 Sum_probs=120.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
..+..+.||+|.++.+..+.-+.. ...-.+++|.|||||||||-+.++|+++-...+ .
T Consensus 21 YrP~~l~dIVGNe~tv~rl~via~---------------------~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-k 78 (333)
T KOG0991|consen 21 YRPSVLQDIVGNEDTVERLSVIAK---------------------EGNMPNLIISGPPGTGKTTSILCLARELLGDSY-K 78 (333)
T ss_pred hCchHHHHhhCCHHHHHHHHHHHH---------------------cCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-h
Confidence 344678999999999998876554 345568999999999999999999999843211 1
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHHhcC---CCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLANEL---PNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~---a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
-.+..+++++-.+- ......+ +.|.+-+-. ..+.|++|||.|+|....|..+ .+.|+- ...
T Consensus 79 e~vLELNASdeRGI--DvVRn~I-K~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAl-----------RRtMEi--yS~ 142 (333)
T KOG0991|consen 79 EAVLELNASDERGI--DVVRNKI-KMFAQKKVTLPPGRHKIIILDEADSMTAGAQQAL-----------RRTMEI--YSN 142 (333)
T ss_pred hHhhhccCcccccc--HHHHHHH-HHHHHhhccCCCCceeEEEeeccchhhhHHHHHH-----------HHHHHH--Hcc
Confidence 12444555433221 0111222 234333322 2347999999999975544333 233332 235
Q ss_pred cEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 431 KVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 431 ~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
..+++.+||..+.+-+.+.+|| ..+.+...+..+...-+....+. +..+.++.+.-...| |+++.++...
T Consensus 143 ttRFalaCN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnLQ 216 (333)
T KOG0991|consen 143 TTRFALACNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNLQ 216 (333)
T ss_pred cchhhhhhcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHHH
Confidence 6788899999999999999999 77888777766655544444432 455556655554444 6666655543
No 186
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=1.1e-10 Score=122.27 Aligned_cols=158 Identities=19% Similarity=0.249 Sum_probs=108.7
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCCcC-----------------eEEechhhHHhhhhchhHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQGVP-----------------LMYVPLEVVMSKYYGESERLLGKVF 380 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~~~-----------------~~~i~~~~l~s~~~G~~~~~l~~~f 380 (567)
.+.++.+||+||+|+|||++|+++|+.+.+.. ....+ +..+....- ++. -.-+.++.+.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHH
Confidence 46688899999999999999999999986531 11112 222221100 000 1224555555
Q ss_pred HHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEE
Q 047219 381 SLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMIT 457 (567)
Q Consensus 381 ~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~ 457 (567)
+.+.. .+...|++||++|.|... ..+.||+.++. ++.++++|.+|+.++.+.|.++||| ..+.
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~~-----------aaNaLLK~LEE--Pp~~~~fiL~t~~~~~ll~TI~SRc-~~~~ 161 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNRN-----------AANALLKSLEE--PSGDTVLLLISHQPSRLLPTIKSRC-QQQA 161 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCHH-----------HHHHHHHHHhC--CCCCeEEEEEECChhhCcHHHHhhc-eeee
Confidence 54442 234579999999999733 55788888884 5678999999999999999999999 7899
Q ss_pred ecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCC
Q 047219 458 FGLPDHENRQEIAAQYAKHLTKAELAELATATEEMS 493 (567)
Q Consensus 458 i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s 493 (567)
|..|+.++-.+.+.........+....++....|-.
T Consensus 162 ~~~~~~~~~~~~L~~~~~~~~~~~~~~~l~la~Gsp 197 (328)
T PRK05707 162 CPLPSNEESLQWLQQALPESDERERIELLTLAGGSP 197 (328)
T ss_pred CCCcCHHHHHHHHHHhcccCChHHHHHHHHHcCCCH
Confidence 999999988887776543344445555555555533
No 187
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=6.1e-11 Score=134.15 Aligned_cols=171 Identities=22% Similarity=0.271 Sum_probs=131.6
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCC
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQ 352 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~ 352 (567)
-.++-++|.++.++++.+.+.+ +..++-+|.|+||+|||.++..+|...-.. .+.
T Consensus 167 gklDPvIGRd~EI~r~iqIL~R---------------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~ 225 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSR---------------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLK 225 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhc---------------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHc
Confidence 3577899999999999887752 345566788999999999999999987543 234
Q ss_pred CcCeEEechhhHHh--hhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 353 GVPLMYVPLEVVMS--KYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 353 ~~~~~~i~~~~l~s--~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
+..++.++...+.. +|.|+.+.++..+.++..... +.||||||||.+.+.-..... . -+..+-|...+ .++
T Consensus 226 ~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~-a-~DAaNiLKPaL----ARG 298 (786)
T COG0542 226 DKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGG-A-MDAANLLKPAL----ARG 298 (786)
T ss_pred CCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCccccc-c-cchhhhhHHHH----hcC
Confidence 66788888877764 789999999999999999877 699999999999776443211 1 11223333333 357
Q ss_pred cEEEEEeeCC-----CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh
Q 047219 431 KVVVIAATNR-----KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 431 ~viVIaaTN~-----~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~ 476 (567)
.+.+|++|.. .-.-|++|-+|| ..+.+..|+.++-..||+-+...
T Consensus 299 eL~~IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~ 348 (786)
T COG0542 299 ELRCIGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKER 348 (786)
T ss_pred CeEEEEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHH
Confidence 8899999964 224689999999 88999999999999999977653
No 188
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.26 E-value=5.9e-11 Score=112.21 Aligned_cols=141 Identities=20% Similarity=0.277 Sum_probs=93.2
Q ss_pred CcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC-----------
Q 047219 284 GYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ----------- 352 (567)
Q Consensus 284 G~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~----------- 352 (567)
|++++++.|.+.+.. .+.|..+||+||+|+||+++|+++++.+......
T Consensus 1 gq~~~~~~L~~~~~~--------------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~ 60 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS--------------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCR 60 (162)
T ss_dssp S-HHHHHHHHHHHHC--------------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHH
T ss_pred CcHHHHHHHHHHHHc--------------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHH
Confidence 778888888877642 5678889999999999999999999998654211
Q ss_pred ------CcCeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhh
Q 047219 353 ------GVPLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQI 423 (567)
Q Consensus 353 ------~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~l 423 (567)
..++..+....... .-..+.++.+.+.+.. .++..|++|||+|.|... ..+.||+.|
T Consensus 61 ~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-----------a~NaLLK~L 126 (162)
T PF13177_consen 61 RIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-----------AQNALLKTL 126 (162)
T ss_dssp HHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-----------HHHHHHHHH
T ss_pred HHHhccCcceEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-----------HHHHHHHHh
Confidence 22333333222100 0122445555554432 234579999999999733 557888888
Q ss_pred cCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCC
Q 047219 424 DGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLP 461 (567)
Q Consensus 424 d~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P 461 (567)
+ +.+.++++|.+|+.++.+.+.++||| ..+.|...
T Consensus 127 E--epp~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~l 161 (162)
T PF13177_consen 127 E--EPPENTYFILITNNPSKILPTIRSRC-QVIRFRPL 161 (162)
T ss_dssp H--STTTTEEEEEEES-GGGS-HHHHTTS-EEEEE---
T ss_pred c--CCCCCEEEEEEECChHHChHHHHhhc-eEEecCCC
Confidence 8 46789999999999999999999999 78887654
No 189
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.26 E-value=1.5e-10 Score=124.38 Aligned_cols=148 Identities=20% Similarity=0.312 Sum_probs=94.0
Q ss_pred cccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC-CCCCcCeE
Q 047219 279 WENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM-PWQGVPLM 357 (567)
Q Consensus 279 ~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~-~~~~~~~~ 357 (567)
++++.+.++..+.+...+. ..++++|+||||||||++|+.+|+.+... .+..+.++
T Consensus 174 l~d~~i~e~~le~l~~~L~-----------------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~V 230 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT-----------------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMV 230 (459)
T ss_pred hhcccCCHHHHHHHHHHHh-----------------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEE
Confidence 5677777777766655442 35789999999999999999999988532 22223344
Q ss_pred EechhhHHhhhh--------ch--hHHHHHHHHHHHhcCC-CCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhh---
Q 047219 358 YVPLEVVMSKYY--------GE--SERLLGKVFSLANELP-NGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQI--- 423 (567)
Q Consensus 358 ~i~~~~l~s~~~--------G~--~~~~l~~~f~~A~~~a-~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~l--- 423 (567)
.+..+--...++ |. ....+..+...|.... .+.+||||||+.-.... ++.+++..+
T Consensus 231 tFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~ 300 (459)
T PRK11331 231 QFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHD 300 (459)
T ss_pred eecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhcccc
Confidence 443222111221 11 1122334455565432 46899999999865432 112222222
Q ss_pred -----------------cCcccCCcEEEEEeeCCCC----CCChHHHhccceEEEecC
Q 047219 424 -----------------DGFEQDKKVVVIAATNRKQ----DLDPALISRFDSMITFGL 460 (567)
Q Consensus 424 -----------------d~~~~~~~viVIaaTN~~~----~Ld~aL~sRf~~~I~i~~ 460 (567)
+.+..+.++.||||+|..+ .+|.+|+||| ..+++.+
T Consensus 301 ~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p 357 (459)
T PRK11331 301 KRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEP 357 (459)
T ss_pred ccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecC
Confidence 2345678999999999877 6999999999 7788865
No 190
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.25 E-value=3.6e-10 Score=116.10 Aligned_cols=90 Identities=29% Similarity=0.404 Sum_probs=67.2
Q ss_pred CcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC------------CCCCChHHHhccceEE
Q 047219 389 GAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR------------KQDLDPALISRFDSMI 456 (567)
Q Consensus 389 ~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~------------~~~Ld~aL~sRf~~~I 456 (567)
++||||||+|.|.-. .+..|-+.|+. .---++|+|||+ |.-++.+|+.|+ .+|
T Consensus 292 pGVLFIDEvHmLDIE-----------~FsFlnrAlEs---e~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII 356 (450)
T COG1224 292 PGVLFIDEVHMLDIE-----------CFSFLNRALES---ELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LII 356 (450)
T ss_pred cceEEEechhhhhHH-----------HHHHHHHHhhc---ccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEE
Confidence 389999999988533 23333344442 233488888987 777999999999 899
Q ss_pred EecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCC
Q 047219 457 TFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMS 493 (567)
Q Consensus 457 ~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s 493 (567)
...+++.++.++|++..++. +.++.++.++..-..-|
T Consensus 357 ~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etS 397 (450)
T COG1224 357 STRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETS 397 (450)
T ss_pred ecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhh
Confidence 99999999999999998874 56677787777644333
No 191
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.2e-11 Score=123.29 Aligned_cols=135 Identities=24% Similarity=0.395 Sum_probs=89.4
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
+-++|++.+|+.|-=++-. -|+++...-....-.-.-.++||.||+|+|||+||+.+|+.+ ++||.--
T Consensus 61 ~YVIGQe~AKKvLsVAVYN------HYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L------nVPFaiA 128 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYN------HYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL------NVPFAIA 128 (408)
T ss_pred hheecchhhhceeeeeehh------HHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh------CCCeeec
Confidence 4589999999877544432 244443221100001234679999999999999999999999 8999988
Q ss_pred chhhHHh-hhhchhH-HHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhh--hHHH-HHHHHHHHHHhhcCc
Q 047219 360 PLEVVMS-KYYGESE-RLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSE--MHEA-TRRILSVLLRQIDGF 426 (567)
Q Consensus 360 ~~~~l~s-~~~G~~~-~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~--l~~~-~~~vl~~LL~~ld~~ 426 (567)
++..+.. .|+|+.- ..+-.++..|. +.+..+|++|||||+++.+..+. ..++ -+.++..||+.+++.
T Consensus 129 DATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 129 DATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred cccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 8877754 6888753 34445554443 22346999999999998775432 1111 134556788888774
No 192
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.24 E-value=2.1e-11 Score=131.97 Aligned_cols=162 Identities=16% Similarity=0.153 Sum_probs=94.4
Q ss_pred cccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC-CCCCcCeEEe
Q 047219 281 NIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM-PWQGVPLMYV 359 (567)
Q Consensus 281 dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~-~~~~~~~~~i 359 (567)
.|+|.+++++.+...+ ....+|||+||||||||++|+++|..+... +|....+...
T Consensus 21 ~i~gre~vI~lll~aa-----------------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft 77 (498)
T PRK13531 21 GLYERSHAIRLCLLAA-----------------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS 77 (498)
T ss_pred hccCcHHHHHHHHHHH-----------------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec
Confidence 4788888887765543 456799999999999999999999988542 3322222221
Q ss_pred chhhHHhhhhchh-HHHH--HHHHHHHhc--CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEE
Q 047219 360 PLEVVMSKYYGES-ERLL--GKVFSLANE--LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVV 434 (567)
Q Consensus 360 ~~~~l~s~~~G~~-~~~l--~~~f~~A~~--~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viV 434 (567)
.. +.++|.. -... ...|..... .....+||+|||+.+.++.|..+.+++++ .++.........+..++
T Consensus 78 tp----~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~E--r~~t~g~~~~~lp~rfi- 150 (498)
T PRK13531 78 TP----EEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINE--RRFRNGAHEEKIPMRLL- 150 (498)
T ss_pred Cc----HHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHh--CeEecCCeEEeCCCcEE-
Confidence 22 2344431 0000 111221110 00123899999999988877766665533 11111111112222333
Q ss_pred EEeeCCCC---CCChHHHhccceEEEecCCC-HHHHHHHHHH
Q 047219 435 IAATNRKQ---DLDPALISRFDSMITFGLPD-HENRQEIAAQ 472 (567)
Q Consensus 435 IaaTN~~~---~Ld~aL~sRf~~~I~i~~P~-~~eR~eIL~~ 472 (567)
++|||... .+.+++++||-..+.+++|+ .++..+++..
T Consensus 151 v~ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 151 VTASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EEECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 44447522 46679999997688888886 4555777764
No 193
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.23 E-value=2.1e-11 Score=137.13 Aligned_cols=149 Identities=19% Similarity=0.262 Sum_probs=97.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhH--HHHH-H--HHH-HHhcCCCCcEEEEc
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESE--RLLG-K--VFS-LANELPNGAIIFLD 395 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~--~~l~-~--~f~-~A~~~a~~~ILfID 395 (567)
-.+|||.|+||||||++|+++|+.+... .+|+.++.+.....++|... ..+. . .|. .....+++++||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~----~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lD 91 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPI----MPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVD 91 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcC----CCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEecc
Confidence 4689999999999999999999988642 24666665444445555421 0000 0 000 01122456899999
Q ss_pred CcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC---CCChHHHhccceEEEec-CCCHHHHHHHHH
Q 047219 396 EVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ---DLDPALISRFDSMITFG-LPDHENRQEIAA 471 (567)
Q Consensus 396 EID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~---~Ld~aL~sRf~~~I~i~-~P~~~eR~eIL~ 471 (567)
||+.+.+..|..+.+++++-...+.+.......+.+++||+|+|..+ .|+++|++||...+.+. +|+.++|.+|++
T Consensus 92 Ei~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~ 171 (589)
T TIGR02031 92 MANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVR 171 (589)
T ss_pred chhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHH
Confidence 99999877665555444321100111111223356899999999865 79999999998877774 668888999998
Q ss_pred HHH
Q 047219 472 QYA 474 (567)
Q Consensus 472 ~~~ 474 (567)
...
T Consensus 172 ~~~ 174 (589)
T TIGR02031 172 RER 174 (589)
T ss_pred HHH
Confidence 765
No 194
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.21 E-value=2.7e-11 Score=127.30 Aligned_cols=144 Identities=26% Similarity=0.316 Sum_probs=93.7
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHH--hhhhchhHHHHH----HHHHHHhcCCCC---cE
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVM--SKYYGESERLLG----KVFSLANELPNG---AI 391 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~--s~~~G~~~~~l~----~~f~~A~~~a~~---~I 391 (567)
...++||.||||||||++|+.+|..+ +.+|..+.|.... +..+|...-... ..|.....--.. ++
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l------~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~i 115 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARAL------GLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVI 115 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHh------CCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceE
Confidence 46789999999999999999999999 6778888876332 233443221111 001000000001 49
Q ss_pred EEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcC-cccCCcEEEEEeeCC-----CCCCChHHHhccceEEEecCC-CHH
Q 047219 392 IFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG-FEQDKKVVVIAATNR-----KQDLDPALISRFDSMITFGLP-DHE 464 (567)
Q Consensus 392 LfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~-~~~~~~viVIaaTN~-----~~~Ld~aL~sRf~~~I~i~~P-~~~ 464 (567)
+++|||+...++.|..+++.+++....+ .... +..+..+++|+|+|+ ...+++++++||...+.++.| +..
T Consensus 116 ll~DEInra~p~~q~aLl~~l~e~~vtv--~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~ 193 (329)
T COG0714 116 LLLDEINRAPPEVQNALLEALEERQVTV--PGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEE 193 (329)
T ss_pred EEEeccccCCHHHHHHHHHHHhCcEEEE--CCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchH
Confidence 9999999998876666655554411111 1112 445678999999994 556899999999889999999 444
Q ss_pred HHHHHHHH
Q 047219 465 NRQEIAAQ 472 (567)
Q Consensus 465 eR~eIL~~ 472 (567)
+...++..
T Consensus 194 e~~~i~~~ 201 (329)
T COG0714 194 EERIILAR 201 (329)
T ss_pred HHHHHHHh
Confidence 44444443
No 195
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.20 E-value=9.3e-10 Score=114.68 Aligned_cols=86 Identities=24% Similarity=0.371 Sum_probs=55.2
Q ss_pred CcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC------------CCCCChHHHhccceEE
Q 047219 389 GAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR------------KQDLDPALISRFDSMI 456 (567)
Q Consensus 389 ~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~------------~~~Ld~aL~sRf~~~I 456 (567)
+|||||||+|.|... -+..|-+.++. .-.-+||.+||+ |.-++.+|+.|| ..|
T Consensus 279 pGVLFIDEvHmLDiE-----------cFsfLnralEs---~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII 343 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIE-----------CFSFLNRALES---ELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRL-LII 343 (398)
T ss_dssp E-EEEEESGGGSBHH-----------HHHHHHHHHTS---TT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEE
T ss_pred cceEEecchhhccHH-----------HHHHHHHHhcC---CCCcEEEEecCceeeeccCccCcCCCCCCcchHhhc-EEE
Confidence 389999999998633 33444445542 334588888986 567899999999 999
Q ss_pred EecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 457 TFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 457 ~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
...+++.++..+|++..++. +..+.++.+....
T Consensus 344 ~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig 380 (398)
T PF06068_consen 344 RTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIG 380 (398)
T ss_dssp EE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHh
Confidence 99999999999999999875 4455555555443
No 196
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.20 E-value=1.8e-12 Score=118.64 Aligned_cols=109 Identities=30% Similarity=0.489 Sum_probs=66.6
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHH--hhhhchhHHH-------HHHHHHHHhcCCCCcEEEE
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVM--SKYYGESERL-------LGKVFSLANELPNGAIIFL 394 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~--s~~~G~~~~~-------l~~~f~~A~~~a~~~ILfI 394 (567)
+|||+||||||||++|+.+|+.+ +.++..+.++... ..++|...-. -..+.... . .++++||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~-~--~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM-R--KGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH-H--EEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh------hcceEEEEeccccccccceeeeeecccccccccccccccc-c--ceeEEEE
Confidence 58999999999999999999999 5567666665422 2333321100 00000001 1 3689999
Q ss_pred cCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc-----------ccCC------cEEEEEeeCCCC----CCChHHHhcc
Q 047219 395 DEVDSFAVARDSEMHEATRRILSVLLRQIDGF-----------EQDK------KVVVIAATNRKQ----DLDPALISRF 452 (567)
Q Consensus 395 DEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~-----------~~~~------~viVIaaTN~~~----~Ld~aL~sRf 452 (567)
|||+...+.... .|+..++.. .... ++++|+|+|+.+ .++++|++||
T Consensus 72 DEin~a~~~v~~-----------~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 72 DEINRAPPEVLE-----------SLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp SSCGG--HHHHH-----------TTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred CCcccCCHHHHH-----------HHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 999987644333 333333321 1112 499999999988 8999999998
No 197
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.19 E-value=6.6e-11 Score=130.26 Aligned_cols=191 Identities=19% Similarity=0.244 Sum_probs=113.1
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-----
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP----- 350 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~----- 350 (567)
...|+++.|++.+++.+.-. .....+++|.||||||||++|++++..+....
T Consensus 188 ~~d~~dv~Gq~~~~~al~~a-----------------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~l 244 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIA-----------------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAI 244 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhh-----------------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEE
Confidence 35899999999987665432 34557899999999999999999997653210
Q ss_pred -----------------CCCcCeEEechhhHHhhhhchhH-HHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHH
Q 047219 351 -----------------WQGVPLMYVPLEVVMSKYYGESE-RLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEAT 412 (567)
Q Consensus 351 -----------------~~~~~~~~i~~~~l~s~~~G~~~-~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~ 412 (567)
+...+|....++......+|... ...+ .+ ..+.+++|||||++.|....+..+.+.+
T Consensus 245 e~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG-~i----~lA~~GvLfLDEi~e~~~~~~~~L~~~L 319 (499)
T TIGR00368 245 ETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPG-EI----SLAHNGVLFLDELPEFKRSVLDALREPI 319 (499)
T ss_pred eccccccchhhhccccccccCCccccccccchhhhhCCccccchh-hh----hccCCCeEecCChhhCCHHHHHHHHHHH
Confidence 01123333332222222233211 1111 12 3345799999999998755443332222
Q ss_pred HHHHHHHHHhhcCcccCCcEEEEEeeCCC-----C------------------CCChHHHhccceEEEecCCCHHHHHHH
Q 047219 413 RRILSVLLRQIDGFEQDKKVVVIAATNRK-----Q------------------DLDPALISRFDSMITFGLPDHENRQEI 469 (567)
Q Consensus 413 ~~vl~~LL~~ld~~~~~~~viVIaaTN~~-----~------------------~Ld~aL~sRf~~~I~i~~P~~~eR~eI 469 (567)
+.-.-.+.+.......+.++.+|+++|+- + .+...|+.|||..+.++.++.++.
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l--- 396 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL--- 396 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH---
Confidence 11000000000011234689999999962 1 488889999999999987765421
Q ss_pred HHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Q 047219 470 AAQYAKHLTKAELAELATATEEMSGRDIRDVCQQAERSWASKII 513 (567)
Q Consensus 470 L~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r~i 513 (567)
.....+-+.++++.-+..|.....+|+.
T Consensus 397 ----------------~~~~~~e~s~~ir~rV~~Ar~~q~~R~~ 424 (499)
T TIGR00368 397 ----------------LSTGSGESSAEVKQRVIKAREIQNIRYE 424 (499)
T ss_pred ----------------hccCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 1122345677777777777766666653
No 198
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.18 E-value=1e-09 Score=123.84 Aligned_cols=55 Identities=24% Similarity=0.316 Sum_probs=46.3
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM 349 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~ 349 (567)
...|...+++++|++++++.++..+.. ..+++|+||||||||++++++++.++..
T Consensus 10 ~~~~~~~~~~viG~~~a~~~l~~a~~~-----------------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 10 IPVPERLIDQVIGQEEAVEIIKKAAKQ-----------------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cCcchhhHhhccCHHHHHHHHHHHHHc-----------------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 355778899999999999988876641 2489999999999999999999998654
No 199
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.6e-10 Score=117.92 Aligned_cols=116 Identities=22% Similarity=0.298 Sum_probs=76.5
Q ss_pred cEEEEcCcchhhhhhhhhhHHHH-HHHHHHHHHhhcCccc--------CCcEEEEEee----CCCCCCChHHHhccceEE
Q 047219 390 AIIFLDEVDSFAVARDSEMHEAT-RRILSVLLRQIDGFEQ--------DKKVVVIAAT----NRKQDLDPALISRFDSMI 456 (567)
Q Consensus 390 ~ILfIDEID~L~~~~q~~l~~~~-~~vl~~LL~~ld~~~~--------~~~viVIaaT----N~~~~Ld~aL~sRf~~~I 456 (567)
||+||||||+++.+......++. +.++..||...++... ...+++||+. ..|.+|-|.|..||+..+
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRV 331 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRV 331 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEE
Confidence 99999999999877653322333 3455678888777532 2467788776 358899999999999999
Q ss_pred EecCCCHHHHHHHHHHHHHhhCHHHH--HHHHHhccCCCHHHHHHHHHHHH
Q 047219 457 TFGLPDHENRQEIAAQYAKHLTKAEL--AELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 457 ~i~~P~~~eR~eIL~~~~~~~~~~~l--~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
++...+.++-..||..--..+..+.. -+--...-.|+...|..+...||
T Consensus 332 EL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~ 382 (444)
T COG1220 332 ELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAY 382 (444)
T ss_pred EcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHH
Confidence 99999999988887642211111111 00001112366677777777666
No 200
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.16 E-value=1e-10 Score=111.61 Aligned_cols=115 Identities=20% Similarity=0.330 Sum_probs=72.4
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC-CCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG-AMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDE 396 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~-~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDE 396 (567)
|-.++||.||+|||||.+|+++++.+. .. ..+++.++++.+.... +.+..+..++..+. ...+.+||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~---~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDE 76 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGS---ERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDE 76 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SS---CCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEET
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCC---ccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHH
Confidence 345799999999999999999999995 22 3479999988876611 00111111111110 111246999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHhhcCcc---------cCCcEEEEEeeCC
Q 047219 397 VDSFAVARDSEMHEATRRILSVLLRQIDGFE---------QDKKVVVIAATNR 440 (567)
Q Consensus 397 ID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~---------~~~~viVIaaTN~ 440 (567)
||+..+.....-.-.-..+++.||+.+++-. .-.++++|+|+|-
T Consensus 77 idKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~ 129 (171)
T PF07724_consen 77 IDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNF 129 (171)
T ss_dssp GGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESS
T ss_pred HhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccc
Confidence 9999874222222222356667777765431 2358999999996
No 201
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=1.3e-09 Score=113.67 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=109.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC---------------cCeEEec--hhhHHhhh-hchhHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG---------------VPLMYVP--LEVVMSKY-YGESERLLGKVF 380 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~---------------~~~~~i~--~~~l~s~~-~G~~~~~l~~~f 380 (567)
.+.+..+||+||+|+||+++|.++|+.+.+..-.. -.+..+. .+.-..+. ..-.-+.++++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 56788999999999999999999999885431111 1122221 10000000 001134455555
Q ss_pred HHHhcC---CCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEE
Q 047219 381 SLANEL---PNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMIT 457 (567)
Q Consensus 381 ~~A~~~---a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~ 457 (567)
+.+... +...|++||++|.|... ..+.||+.++ +.+.++++|.+|+.++.+.|.++||| ..+.
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~~-----------AaNaLLKtLE--EPp~~~~fiL~~~~~~~lLpTIrSRC-q~i~ 168 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINRA-----------ACNALLKTLE--EPSPGRYLWLISAQPARLPATIRSRC-QRLE 168 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCHH-----------HHHHHHHHhh--CCCCCCeEEEEECChhhCchHHHhhh-eEee
Confidence 544432 23479999999999633 5578888888 46778999999999999999999999 8999
Q ss_pred ecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHH
Q 047219 458 FGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRD 499 (567)
Q Consensus 458 i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~ 499 (567)
|..|+.++-.+.+... .........++....|-.+..+..
T Consensus 169 ~~~~~~~~~~~~L~~~--~~~~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 169 FKLPPAHEALAWLLAQ--GVSERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CCCcCHHHHHHHHHHc--CCChHHHHHHHHHcCCCHHHHHHH
Confidence 9999998877777642 345455555666665544444433
No 202
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.14 E-value=4.6e-10 Score=99.82 Aligned_cols=131 Identities=31% Similarity=0.417 Sum_probs=83.5
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh--------------hchhHHHHHHHHHHHhcCC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY--------------YGESERLLGKVFSLANELP 387 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~--------------~G~~~~~l~~~f~~A~~~a 387 (567)
+..++|+||||||||++++.+++.+... ...+++++++...... ...........+..+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP---GGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC---CCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999998543 1247777776543321 1234445666777777654
Q ss_pred CCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC-CCCCChHHHhccceEEEecCC
Q 047219 388 NGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR-KQDLDPALISRFDSMITFGLP 461 (567)
Q Consensus 388 ~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~-~~~Ld~aL~sRf~~~I~i~~P 461 (567)
+.+|||||++.+.............. ..............+|+++|. ....+..+..|++..+.+..+
T Consensus 79 -~~viiiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 79 -PDVLILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred -CCEEEEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 48999999999976644332211100 000011123456788999986 344555566688777777544
No 203
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=1.7e-09 Score=113.69 Aligned_cols=161 Identities=14% Similarity=0.150 Sum_probs=109.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCC-CCCCcC-----------------eEEechhhHHhhhhchhHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAM-PWQGVP-----------------LMYVPLEVVMSKYYGESERLLGKVF 380 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~-~~~~~~-----------------~~~i~~~~l~s~~~G~~~~~l~~~f 380 (567)
.+.+..+||+||+|+||+++|.++|+.+.+. +-.+.+ +..+..+.- ... -.-+.++.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSS--LGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-ccc--CCHHHHHHHH
Confidence 5778899999999999999999999998542 111111 222221100 000 1123455554
Q ss_pred HHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEE
Q 047219 381 SLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMIT 457 (567)
Q Consensus 381 ~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~ 457 (567)
+.+.. .+...|++||++|.|.. ...+.||+.++ +++.++++|..|+.++.+.|.++||| ..+.
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTIrSRC-q~~~ 163 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLE--EPPENTWFFLACREPARLLATLRSRC-RLHY 163 (334)
T ss_pred HHHhhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHhcc-cccc
Confidence 44332 23457999999999963 35588999998 47889999999999999999999999 6889
Q ss_pred ecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHH
Q 047219 458 FGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDI 497 (567)
Q Consensus 458 i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL 497 (567)
|+.|+.++..+.+.... ....+....++....|-.+..+
T Consensus 164 ~~~~~~~~~~~~L~~~~-~~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 164 LAPPPEQYALTWLSREV-TMSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred CCCCCHHHHHHHHHHcc-CCCHHHHHHHHHHcCCCHHHHH
Confidence 99999888777665431 3444455555556555444433
No 204
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.13 E-value=3.1e-09 Score=110.98 Aligned_cols=137 Identities=13% Similarity=0.187 Sum_probs=99.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCCcC-----------------eEEechhhHHhhhhchhHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQGVP-----------------LMYVPLEVVMSKYYGESERLLGKVF 380 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~~~-----------------~~~i~~~~l~s~~~G~~~~~l~~~f 380 (567)
.+.++.+||+||+|+||+++|+++|+.+.+.. ....+ +..+... .++.. .-+.++.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--~~~~I--~id~iR~l~ 96 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--DNKDI--GVDQVREIN 96 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc--cCCCC--CHHHHHHHH
Confidence 46788999999999999999999999985431 11112 2223211 01111 234455554
Q ss_pred HHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEE
Q 047219 381 SLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMIT 457 (567)
Q Consensus 381 ~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~ 457 (567)
+.+.. .+...|++||++|.|... ..+.||+.++ +++.++++|.+|+.++.+.|.++||| ..+.
T Consensus 97 ~~~~~~~~~g~~KV~iI~~a~~m~~~-----------AaNaLLKtLE--EPp~~~~fiL~t~~~~~llpTI~SRC-~~~~ 162 (325)
T PRK06871 97 EKVSQHAQQGGNKVVYIQGAERLTEA-----------AANALLKTLE--EPRPNTYFLLQADLSAALLPTIYSRC-QTWL 162 (325)
T ss_pred HHHhhccccCCceEEEEechhhhCHH-----------HHHHHHHHhc--CCCCCeEEEEEECChHhCchHHHhhc-eEEe
Confidence 44432 234579999999999633 5578899888 47889999999999999999999999 8999
Q ss_pred ecCCCHHHHHHHHHHH
Q 047219 458 FGLPDHENRQEIAAQY 473 (567)
Q Consensus 458 i~~P~~~eR~eIL~~~ 473 (567)
|..|+.++..+.+...
T Consensus 163 ~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 163 IHPPEEQQALDWLQAQ 178 (325)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999888777654
No 205
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.12 E-value=1.5e-10 Score=132.82 Aligned_cols=153 Identities=19% Similarity=0.208 Sum_probs=91.2
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC-CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
+...+|||+|+||||||.+|+++|+...+..+ .+.++..+.+..... ..+...... .+-..+...+.+|+++|||++
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~-~~d~~tG~~-~le~GaLvlAdgGtL~IDEid 567 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIK-FNESDNGRA-MIQPGAVVLANGGVCCIDELD 567 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhh-hcccccCcc-cccCCcEEEcCCCeEEecchh
Confidence 44569999999999999999999998765421 233444444333211 010000000 000112234557999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC-------------CCChHHHhccceEEEe-cCCCHH
Q 047219 399 SFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ-------------DLDPALISRFDSMITF-GLPDHE 464 (567)
Q Consensus 399 ~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~-------------~Ld~aL~sRf~~~I~i-~~P~~~ 464 (567)
.|....|..+++++++..-.+-+.......+.++.||||+|+.. .|++.|++|||.++.+ +.|+.+
T Consensus 568 kms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~ 647 (915)
T PTZ00111 568 KCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQD 647 (915)
T ss_pred hCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChH
Confidence 99877666655554321000111111123457899999999832 4889999999887655 667665
Q ss_pred HHHHHHHHHH
Q 047219 465 NRQEIAAQYA 474 (567)
Q Consensus 465 eR~eIL~~~~ 474 (567)
.=..|..+.+
T Consensus 648 ~D~~lA~hI~ 657 (915)
T PTZ00111 648 TDQLISLSIA 657 (915)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 206
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.11 E-value=1.3e-11 Score=111.00 Aligned_cols=121 Identities=24% Similarity=0.302 Sum_probs=64.5
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh--hHHhhhhchhHHHH-HHHHHHHhcCCCCcEEEEcCcchh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE--VVMSKYYGESERLL-GKVFSLANELPNGAIIFLDEVDSF 400 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~--~l~s~~~G~~~~~l-~~~f~~A~~~a~~~ILfIDEID~L 400 (567)
||||+|+||+|||++|+++|+.+ +..|..|.+. .+-+...|..--.. ...|+..+--.-..|+++|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~------~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL------GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT------T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHc------CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC
Confidence 68999999999999999999999 6667776653 22333333210000 000000000001369999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC-----CCChHHHhcc
Q 047219 401 AVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ-----DLDPALISRF 452 (567)
Q Consensus 401 ~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~-----~Ld~aL~sRf 452 (567)
.++.|+.+++++++ .+.--....+..+..+.||||.|+.+ .|+++++.||
T Consensus 75 ppktQsAlLeam~E--r~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 75 PPKTQSALLEAMEE--RQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp -HHHHHHHHHHHHH--SEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred CHHHHHHHHHHHHc--CeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 99988877776654 11111112334567899999999865 6999999998
No 207
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.07 E-value=4.7e-10 Score=126.49 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=44.2
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++..|++++|++++++.|...+.. ..+++|+||||||||++|+++++.++
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~-----------------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ-----------------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh-----------------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 45678999999999999988776641 24799999999999999999998875
No 208
>PRK04132 replication factor C small subunit; Provisional
Probab=99.06 E-value=2.4e-09 Score=123.55 Aligned_cols=150 Identities=17% Similarity=0.136 Sum_probs=112.6
Q ss_pred CCceEEeeC--CCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCC-----CCcEEE
Q 047219 321 RPRAVLFEG--PPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELP-----NGAIIF 393 (567)
Q Consensus 321 ~p~~VLL~G--ppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a-----~~~ILf 393 (567)
|.-+-+..| |++.||||+|+++|+++.... .+.+++.+++++..+. +.++.+...+.... +..|+|
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~-~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvI 635 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGEN-WRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIF 635 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhccc-ccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEE
Confidence 445567779 999999999999999984332 1457899998874321 23444443322111 236999
Q ss_pred EcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHH
Q 047219 394 LDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY 473 (567)
Q Consensus 394 IDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~ 473 (567)
|||+|.|... .++.|++.|+. .+.++++|++||.+..+.+.|+||| ..+.|..|+.++....+...
T Consensus 636 IDEaD~Lt~~-----------AQnALLk~lEe--p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 636 LDEADALTQD-----------AQQALRRTMEM--FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred EECcccCCHH-----------HHHHHHHHhhC--CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 9999999744 34567777773 4578999999999999999999999 89999999999999888887
Q ss_pred HHh----hCHHHHHHHHHhccC
Q 047219 474 AKH----LTKAELAELATATEE 491 (567)
Q Consensus 474 ~~~----~~~~~l~~la~~t~g 491 (567)
+.+ +..+.+..++..+.|
T Consensus 702 ~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 702 AENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHhcCCCCCHHHHHHHHHHcCC
Confidence 764 457778888887776
No 209
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=8e-11 Score=117.90 Aligned_cols=153 Identities=21% Similarity=0.273 Sum_probs=114.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC-----CCCCCCcCeEEechhhHHhhhhchhHHHHHHHH---HHHhcCCCCc
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG-----AMPWQGVPLMYVPLEVVMSKYYGESERLLGKVF---SLANELPNGA 390 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~-----~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f---~~A~~~a~~~ 390 (567)
.....++||.||+|.||+.||+.|...-. ..+|+.+||..+.+..-|+.+||+....+...- ......+.++
T Consensus 205 ~rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 205 IRSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hhccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 45567899999999999999999875432 236777888888888888989887554332211 1122456789
Q ss_pred EEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCH
Q 047219 391 IIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDH 463 (567)
Q Consensus 391 ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~ 463 (567)
.||||||..|....|..++..+++ ..|+......+...++-+|+-|.+ .+.+.++|+-|+ +...|.+|.+
T Consensus 285 mlfldeigelgadeqamllkaiee--krf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~lpgl 361 (531)
T COG4650 285 MLFLDEIGELGADEQAMLLKAIEE--KRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTLPGL 361 (531)
T ss_pred eEehHhhhhcCccHHHHHHHHHHh--hccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeecccc
Confidence 999999999988877766666554 445555555556678888888854 667999999999 8899999999
Q ss_pred HHHHHHHHHHH
Q 047219 464 ENRQEIAAQYA 474 (567)
Q Consensus 464 ~eR~eIL~~~~ 474 (567)
.+|.++++..+
T Consensus 362 ~qr~ediepnl 372 (531)
T COG4650 362 RQRQEDIEPNL 372 (531)
T ss_pred ccCccccCCCc
Confidence 99999987543
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=5.7e-09 Score=109.81 Aligned_cols=141 Identities=21% Similarity=0.280 Sum_probs=99.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-C-CCcC-----------------eEEechhhHH--------------
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-W-QGVP-----------------LMYVPLEVVM-------------- 365 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~-~~~~-----------------~~~i~~~~l~-------------- 365 (567)
.+.++.+||+||+|+||+++|+++|+.+.+.. . .+.+ +..+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 57789999999999999999999999986531 1 0112 2222211000
Q ss_pred ----hh----h-hchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEE
Q 047219 366 ----SK----Y-YGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVV 433 (567)
Q Consensus 366 ----s~----~-~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~vi 433 (567)
++ . -.-.-+.++.+.+.+.. .+...|++||++|.|... ..+.||+.++ +++.+++
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-----------AaNaLLKtLE--EPp~~t~ 164 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA-----------AANALLKTLE--EPPPGTV 164 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH-----------HHHHHHHHhc--CCCcCcE
Confidence 00 0 00112345555544432 233579999999999633 5578899888 5788999
Q ss_pred EEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHH
Q 047219 434 VIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQY 473 (567)
Q Consensus 434 VIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~ 473 (567)
+|.+|+.++.+.|.++||| ..+.|..|+.++..+.+...
T Consensus 165 fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 165 FLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 9999999999999999999 89999999999888887653
No 211
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.2e-09 Score=116.86 Aligned_cols=152 Identities=23% Similarity=0.343 Sum_probs=95.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC------
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM------ 349 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~------ 349 (567)
...|.||+|++.+|+.+.-.. -..+++|++||||||||++|+.+...++.-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA-----------------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~l 231 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA-----------------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEAL 231 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH-----------------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHH
Confidence 468999999999999887543 457899999999999999999998776421
Q ss_pred -----------------CCCCcCeEEechhhHHhhhhchh-HHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHH
Q 047219 350 -----------------PWQGVPLMYVPLEVVMSKYYGES-ERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEA 411 (567)
Q Consensus 350 -----------------~~~~~~~~~i~~~~l~s~~~G~~-~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~ 411 (567)
.+...+|..-..+.-+..++|.. ....+++ ..+++|||||||+-.+.
T Consensus 232 E~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeI-----sLAH~GVLFLDElpef~---------- 296 (490)
T COG0606 232 EVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEI-----SLAHNGVLFLDELPEFK---------- 296 (490)
T ss_pred HHHHHhhhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCce-----eeecCCEEEeeccchhh----------
Confidence 01112222211111122222211 1111111 34557999999997764
Q ss_pred HHHHHHHHHHhhcCc-----------ccCCcEEEEEeeCC-----------------------CCCCChHHHhccceEEE
Q 047219 412 TRRILSVLLRQIDGF-----------EQDKKVVVIAATNR-----------------------KQDLDPALISRFDSMIT 457 (567)
Q Consensus 412 ~~~vl~~LL~~ld~~-----------~~~~~viVIaaTN~-----------------------~~~Ld~aL~sRf~~~I~ 457 (567)
+.+++.|..-+++- ..+.++.+|+++|+ ...+...|+.|+|..++
T Consensus 297 -~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~ve 375 (490)
T COG0606 297 -RSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVE 375 (490)
T ss_pred -HHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheec
Confidence 34555555555442 23467899999997 12356677778888888
Q ss_pred ecCCCHHHH
Q 047219 458 FGLPDHENR 466 (567)
Q Consensus 458 i~~P~~~eR 466 (567)
++.++..++
T Consensus 376 v~~~~~~e~ 384 (490)
T COG0606 376 VPRLSAGEL 384 (490)
T ss_pred ccCCCHHHh
Confidence 877664433
No 212
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=5.5e-09 Score=108.89 Aligned_cols=137 Identities=18% Similarity=0.248 Sum_probs=97.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC-----------------cCeEEechhhHHhhhhchhHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG-----------------VPLMYVPLEVVMSKYYGESERLLGKVFS 381 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~-----------------~~~~~i~~~~l~s~~~G~~~~~l~~~f~ 381 (567)
.+.+..+||+||.|+||+++|+++|+.+.+....+ -.+..+.... .++.+ .-+.++.+.+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHH
Confidence 57788999999999999999999999885431111 1223332211 00111 1234454444
Q ss_pred HHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEe
Q 047219 382 LANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITF 458 (567)
Q Consensus 382 ~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i 458 (567)
.+.. .+...|++||++|.|... ..+.||+.++ +++.++++|..|+.++.+.|.++||| ..+.|
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~~~-----------AaNaLLKtLE--EPp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~ 164 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMNES-----------ASNALLKTLE--EPAPNCLFLLVTHNQKRLLPTIVSRC-QQWVV 164 (319)
T ss_pred HHhhCcccCCceEEEecchhhhCHH-----------HHHHHHHHhc--CCCCCeEEEEEECChhhChHHHHhcc-eeEeC
Confidence 3332 233579999999999633 5578889888 47788999999999999999999999 89999
Q ss_pred cCCCHHHHHHHHHH
Q 047219 459 GLPDHENRQEIAAQ 472 (567)
Q Consensus 459 ~~P~~~eR~eIL~~ 472 (567)
..|+.++..+.+..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (319)
T PRK06090 165 TPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999888777654
No 213
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.02 E-value=1.6e-08 Score=112.12 Aligned_cols=207 Identities=20% Similarity=0.243 Sum_probs=128.9
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHH----hhh-----------hcccccccCCCCceEEeeCCCCCcHH
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYD----DIA-----------RGTRCKFESNRPRAVLFEGPPGTGKT 336 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~----~l~-----------~~~~~~~~~~~p~~VLL~GppGTGKT 336 (567)
....+-.|.|+.|.+..-+.+..++... .|-+|. ++. .......+-++.+-+||+||||-|||
T Consensus 263 dky~Pk~FtdLLsDe~tNR~~L~WLK~W--D~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKT 340 (877)
T KOG1969|consen 263 DKYRPKKFTDLLSDEKTNRRMLGWLKQW--DPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKT 340 (877)
T ss_pred cccChhHHHHHhcchhHHHHHHHHHHhh--cHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChh
Confidence 3445568999999999999888887754 222332 220 00011112234466889999999999
Q ss_pred HHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHh-c--CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 337 SCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN-E--LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 337 ~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~-~--~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
|||+.||++. |+.++.|++++-.+.. .....+..+...-. . ...|.+|+|||||--...
T Consensus 341 TLAHViAkqa------GYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~---------- 402 (877)
T KOG1969|consen 341 TLAHVIAKQA------GYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA---------- 402 (877)
T ss_pred HHHHHHHHhc------CceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCcHH----------
Confidence 9999999999 8899999998754421 11122222211111 1 134689999999964311
Q ss_pred HHHHHHHHhhc-------Cccc------------CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHH
Q 047219 414 RILSVLLRQID-------GFEQ------------DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQ 472 (567)
Q Consensus 414 ~vl~~LL~~ld-------~~~~------------~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~ 472 (567)
.++.++..+. +.+. .-.--|||.||. ..-|+|+- -|..++.|..|...-..+-|+.
T Consensus 403 -~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~ 479 (877)
T KOG1969|consen 403 -AVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRLVERLNE 479 (877)
T ss_pred -HHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEecCCChhHHHHHHHH
Confidence 1222222222 1111 012467888884 45678875 5678999999988877777777
Q ss_pred HHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 473 YAKH----LTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 473 ~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
.+.. .....+..+++.+.+ ||+..++...
T Consensus 480 IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQ 512 (877)
T KOG1969|consen 480 ICHRENMRADSKALNALCELTQN----DIRSCINTLQ 512 (877)
T ss_pred HHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHH
Confidence 7654 344567777776654 8888887765
No 214
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.01 E-value=1.2e-08 Score=103.45 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=104.7
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEE--echhhHHhh---hhchh------HH---HHHHHHHHHhcCC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMY--VPLEVVMSK---YYGES------ER---LLGKVFSLANELP 387 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~--i~~~~l~s~---~~G~~------~~---~l~~~f~~A~~~a 387 (567)
+..++|+||+|+|||++++.+++.+.........+.. .+..++... .+|.. .. .+...+.......
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 4468899999999999999999988532110000110 111222211 12211 11 1222222222233
Q ss_pred CCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC--CCCC----ChHHHhccceEEEecCC
Q 047219 388 NGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR--KQDL----DPALISRFDSMITFGLP 461 (567)
Q Consensus 388 ~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~--~~~L----d~aL~sRf~~~I~i~~P 461 (567)
...+|+|||++.+.... .+.+..+..... .....+.|+.+... .+.+ ...+.+|+...++++..
T Consensus 123 ~~~vliiDe~~~l~~~~--------~~~l~~l~~~~~--~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l 192 (269)
T TIGR03015 123 KRALLVVDEAQNLTPEL--------LEELRMLSNFQT--DNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPL 192 (269)
T ss_pred CCeEEEEECcccCCHHH--------HHHHHHHhCccc--CCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCC
Confidence 45799999999985331 111222222111 11223334444432 1111 23577788788999999
Q ss_pred CHHHHHHHHHHHHH--------hhCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q 047219 462 DHENRQEIAAQYAK--------HLTKAELAELATATEEMSGRDIRDVCQQAERSWASK 511 (567)
Q Consensus 462 ~~~eR~eIL~~~~~--------~~~~~~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r 511 (567)
+.++..+++...+. .+..+.++.+.+.+.|. ++.+..+|..++..+...
T Consensus 193 ~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~ 249 (269)
T TIGR03015 193 DREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLE 249 (269)
T ss_pred CHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHc
Confidence 99999999988775 25677899999999887 556999999999776553
No 215
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=4.7e-09 Score=110.19 Aligned_cols=99 Identities=30% Similarity=0.485 Sum_probs=72.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh-hhhchh-HHHHHHHHHHHh---cCCCCcEEEEcC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS-KYYGES-ERLLGKVFSLAN---ELPNGAIIFLDE 396 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s-~~~G~~-~~~l~~~f~~A~---~~a~~~ILfIDE 396 (567)
-.+|||.||+|+|||+||+.+|+.+ ++||.-.+|..+.. .|+|+. +..+..++..|. +.+..+|+||||
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~l------dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDE 299 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVL------DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDE 299 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHh------CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEeh
Confidence 3679999999999999999999999 89999999988765 688874 455666666654 223469999999
Q ss_pred cchhhhhhhhh-hH-HH-HHHHHHHHHHhhcCc
Q 047219 397 VDSFAVARDSE-MH-EA-TRRILSVLLRQIDGF 426 (567)
Q Consensus 397 ID~L~~~~q~~-l~-~~-~~~vl~~LL~~ld~~ 426 (567)
+|+|..+.... .. ++ -+-++..||+.+++.
T Consensus 300 vDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 300 VDKITKKAESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred hhhhcccCccccccccccchhHHHHHHHHhccc
Confidence 99998543221 11 11 133556677777763
No 216
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.99 E-value=8.5e-10 Score=121.23 Aligned_cols=161 Identities=24% Similarity=0.326 Sum_probs=94.7
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC------
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP------ 350 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~------ 350 (567)
..|.++.|+..+++.+.-. .....+++|.||||+|||++++.++..+....
T Consensus 188 ~d~~~v~Gq~~~~~al~la-----------------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le 244 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT-----------------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALE 244 (506)
T ss_pred cCeEEEECcHHHHhhhhee-----------------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEe
Confidence 4788899988777654211 45668999999999999999999998764210
Q ss_pred ----------------CCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHH
Q 047219 351 ----------------WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRR 414 (567)
Q Consensus 351 ----------------~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~ 414 (567)
+...||..-..+.-...++|.....-...+ ..+.+++|||||++.+....+..+.+.+++
T Consensus 245 ~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l----~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~ 320 (506)
T PRK09862 245 SAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI----SLAHNGVLFLDELPEFERRTLDALREPIES 320 (506)
T ss_pred cchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHh----hhccCCEEecCCchhCCHHHHHHHHHHHHc
Confidence 001112111111111122332111111122 344579999999999876544433332221
Q ss_pred HHHHHHHhhcCcccCCcEEEEEeeCCCC---------------------CCChHHHhccceEEEecCCCHH
Q 047219 415 ILSVLLRQIDGFEQDKKVVVIAATNRKQ---------------------DLDPALISRFDSMITFGLPDHE 464 (567)
Q Consensus 415 vl~~LL~~ld~~~~~~~viVIaaTN~~~---------------------~Ld~aL~sRf~~~I~i~~P~~~ 464 (567)
-.-.+.+.......+.++.+|+|+|+.. .++..++.|||..+.++.|+.+
T Consensus 321 g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 321 GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred CcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 0000011111122357899999999742 4778999999999999988654
No 217
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=2.7e-08 Score=112.14 Aligned_cols=203 Identities=15% Similarity=0.225 Sum_probs=115.5
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC--
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-- 350 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-- 350 (567)
...+.++++|+|+++.++.++.++.... ++..+...++|+||||||||++++.+++++....
T Consensus 77 KyrP~~ldel~~~~~ki~~l~~~l~~~~----------------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 77 KYKPETQHELAVHKKKIEEVETWLKAQV----------------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHhcc----------------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 4456789999999999999888775320 1133445699999999999999999999884320
Q ss_pred C-CCcCeEEech-----hhHHhh--hhchhHHHHHHHHHHHhc---------CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 351 W-QGVPLMYVPL-----EVVMSK--YYGESERLLGKVFSLANE---------LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 351 ~-~~~~~~~i~~-----~~l~s~--~~G~~~~~l~~~f~~A~~---------~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
| ..+++....- ..+... .+......+..++..+.. .....||||||++.+.....
T Consensus 141 w~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~-------- 212 (637)
T TIGR00602 141 WSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDT-------- 212 (637)
T ss_pred HhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhH--------
Confidence 0 0011111000 000000 011122334444444431 12357999999987753211
Q ss_pred HHHHHHHH-hhcCcccCCcEEEEEeeC--CC------C-C------CChHHHh--ccceEEEecCCCHHHHHHHHHHHHH
Q 047219 414 RILSVLLR-QIDGFEQDKKVVVIAATN--RK------Q-D------LDPALIS--RFDSMITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 414 ~vl~~LL~-~ld~~~~~~~viVIaaTN--~~------~-~------Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~ 475 (567)
+.+..++. ... ..+.+.+|++++ .. + . +.+++++ |+ .+|.|++.+.......|...+.
T Consensus 213 ~~lq~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~ 288 (637)
T TIGR00602 213 RALHEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVT 288 (637)
T ss_pred HHHHHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHH
Confidence 12233333 111 123344444443 11 0 1 3478987 55 5799999999997777776665
Q ss_pred hh-----------CHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 047219 476 HL-----------TKAELAELATATEEMSGRDIRDVCQQAERS 507 (567)
Q Consensus 476 ~~-----------~~~~l~~la~~t~g~s~~dL~~L~~~a~~~ 507 (567)
.. ..+.+..++... .+|+|.+++.....
T Consensus 289 ~E~~~~~~~~~~p~~~~l~~I~~~s----~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 289 IEAKKNGEKIKVPKKTSVELLCQGC----SGDIRSAINSLQFS 327 (637)
T ss_pred hhhhccccccccCCHHHHHHHHHhC----CChHHHHHHHHHHH
Confidence 31 124566666644 45888877766544
No 218
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=9.7e-09 Score=117.96 Aligned_cols=167 Identities=22% Similarity=0.302 Sum_probs=115.4
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeE
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLM 357 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~ 357 (567)
--+.|+|+++++..|-++|...-.. + . ...+...+||.||.|+|||-||+++|..+... .-.++
T Consensus 560 L~~~V~gQ~eAv~aIa~AI~~sr~g------l----~---~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs---e~~~I 623 (898)
T KOG1051|consen 560 LHERVIGQDEAVAAIAAAIRRSRAG------L----K---DPNPDAWFLFLGPDGVGKTELAKALAEYVFGS---EENFI 623 (898)
T ss_pred HHhhccchHHHHHHHHHHHHhhhcc------c----C---CCCCCeEEEEECCCchhHHHHHHHHHHHHcCC---ccceE
Confidence 3467999999999999999764111 1 0 01367789999999999999999999998654 55789
Q ss_pred EechhhHHh--h-------hhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc-
Q 047219 358 YVPLEVVMS--K-------YYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE- 427 (567)
Q Consensus 358 ~i~~~~l~s--~-------~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~- 427 (567)
.+++++++. + |.|+.+ ...+.++....|.+||+|||||.-.+. +++.|++.+|..+
T Consensus 624 riDmse~~evskligsp~gyvG~e~---gg~LteavrrrP~sVVLfdeIEkAh~~-----------v~n~llq~lD~Grl 689 (898)
T KOG1051|consen 624 RLDMSEFQEVSKLIGSPPGYVGKEE---GGQLTEAVKRRPYSVVLFEEIEKAHPD-----------VLNILLQLLDRGRL 689 (898)
T ss_pred EechhhhhhhhhccCCCcccccchh---HHHHHHHHhcCCceEEEEechhhcCHH-----------HHHHHHHHHhcCcc
Confidence 999887543 2 344332 234445555667899999999986433 4555666655432
Q ss_pred --------cCCcEEEEEeeCC------------------------------------C----CCCChHHHhccceEEEec
Q 047219 428 --------QDKKVVVIAATNR------------------------------------K----QDLDPALISRFDSMITFG 459 (567)
Q Consensus 428 --------~~~~viVIaaTN~------------------------------------~----~~Ld~aL~sRf~~~I~i~ 459 (567)
.-.+++||+|+|. . ..+.+++.+|.+..+.+.
T Consensus 690 tDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~ 769 (898)
T KOG1051|consen 690 TDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNL 769 (898)
T ss_pred ccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeec
Confidence 2358999999875 1 234566666777777777
Q ss_pred CCCHHHHHHHHHHHH
Q 047219 460 LPDHENRQEIAAQYA 474 (567)
Q Consensus 460 ~P~~~eR~eIL~~~~ 474 (567)
..+.++..++.....
T Consensus 770 ~l~~~~~~~i~~~~~ 784 (898)
T KOG1051|consen 770 PLDRDELIEIVNKQL 784 (898)
T ss_pred ccchhhHhhhhhhHH
Confidence 778777666665544
No 219
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.96 E-value=3.5e-09 Score=107.73 Aligned_cols=192 Identities=20% Similarity=0.171 Sum_probs=121.6
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
+...+-++++++++++....+.+... ...-.++|+|||||||||+...+.|..+...
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~~---------------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~-- 89 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYSG---------------------MPGLPHLLFYGPPGTGKTSTILANARDFYSP-- 89 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhcc---------------------CCCCCcccccCCCCCCCCCchhhhhhhhcCC--
Confidence 34566788999999998888877532 2333499999999999999999999998541
Q ss_pred CCcCeEEechhhHHhhhhch-hHHHHHHHHHHHhc------CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhc
Q 047219 352 QGVPLMYVPLEVVMSKYYGE-SERLLGKVFSLANE------LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQID 424 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~-~~~~l~~~f~~A~~------~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld 424 (567)
.+..+.......+.-.|- ....-...|..+.. ++....++|||.|.|....|..+. +..+
T Consensus 90 --~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALR-----------Rvie 156 (360)
T KOG0990|consen 90 --HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALR-----------RVIE 156 (360)
T ss_pred --CCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHH-----------HHHH
Confidence 111111111111111111 01111123333331 234579999999999866554433 3333
Q ss_pred CcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHH----HHHHHHHhccCCCHHHHHHH
Q 047219 425 GFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKA----ELAELATATEEMSGRDIRDV 500 (567)
Q Consensus 425 ~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~----~l~~la~~t~g~s~~dL~~L 500 (567)
. ...+++++..+|++..+.|++++|| ..+.|...+...-...+..+++.-..+ ....++. .+.+|++..
T Consensus 157 k--~t~n~rF~ii~n~~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r----~s~gDmr~a 229 (360)
T KOG0990|consen 157 K--YTANTRFATISNPPQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGR----LSVGDMRVA 229 (360)
T ss_pred H--hccceEEEEeccChhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHH----HhHHHHHHH
Confidence 2 3457788888899999999999999 778888888777777777776643222 2222333 345577777
Q ss_pred HHHHHH
Q 047219 501 CQQAER 506 (567)
Q Consensus 501 ~~~a~~ 506 (567)
+++...
T Consensus 230 ~n~Lqs 235 (360)
T KOG0990|consen 230 LNYLQS 235 (360)
T ss_pred HHHHHH
Confidence 776553
No 220
>PRK08116 hypothetical protein; Validated
Probab=98.94 E-value=6.3e-09 Score=106.32 Aligned_cols=135 Identities=22% Similarity=0.268 Sum_probs=80.7
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhch----hHHHHHHHHHHHhcCCCCcEEEEcC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGE----SERLLGKVFSLANELPNGAIIFLDE 396 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~----~~~~l~~~f~~A~~~a~~~ILfIDE 396 (567)
.+.+++|+|++|||||+||.+|++++... +.++++++..++...+... .......+++... ...+|+|||
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~---~~dlLviDD 186 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV---NADLLILDD 186 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc---CCCEEEEec
Confidence 34679999999999999999999998543 5678889888877654321 1111222333222 246999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCC-CC----CChHHHhcc---ceEEEecCCCHHHHHH
Q 047219 397 VDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRK-QD----LDPALISRF---DSMITFGLPDHENRQE 468 (567)
Q Consensus 397 ID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~-~~----Ld~aL~sRf---~~~I~i~~P~~~eR~e 468 (567)
++..... +.. ...|...++.... ....+|.|||.+ .. ++..+++|+ ...+.+.-++. |..
T Consensus 187 lg~e~~t------~~~---~~~l~~iin~r~~-~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~--R~~ 254 (268)
T PRK08116 187 LGAERDT------EWA---REKVYNIIDSRYR-KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY--RKE 254 (268)
T ss_pred ccCCCCC------HHH---HHHHHHHHHHHHH-CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh--hHH
Confidence 9653211 111 2334444443222 234577777763 22 577888885 24566666554 545
Q ss_pred HHHHH
Q 047219 469 IAAQY 473 (567)
Q Consensus 469 IL~~~ 473 (567)
+.+..
T Consensus 255 ~~~ek 259 (268)
T PRK08116 255 IAKEK 259 (268)
T ss_pred HHHHH
Confidence 54443
No 221
>PF02359 CDC48_N: Cell division protein 48 (CDC48), N-terminal domain; InterPro: IPR003338 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The VAT protein of the archaebacterium Thermoplasma acidophilum, like all other members of the Cdc48/p97 family of AAA ATPases, has two ATPase domains and a 185-residue amino-terminal substrate-recognition domain, VAT-N. VAT shows activity in protein folding and unfolding and thus shares the common function of these ATPases in disassembly and/or degradation of protein complexes. VAT-N is composed of two equally sized subdomains. The amino-terminal subdomain VAT-Nn forms a double-psi beta-barrel whose pseudo-twofold symmetry is mirrored by an internal sequence repeat of 42 residues. The carboxy-terminal subdomain VAT-Nc forms a novel six-stranded beta-clam fold []. Together, VAT-Nn and VAT-Nc form a kidney-shaped structure, in close agreement with results from electron microscopy. VAT-Nn is related to numerous proteins including prokaryotic transcription factors, metabolic enzymes, the protease cofactors UFD1 and PrlF, and aspartic proteinases. ; GO: 0005524 ATP binding; PDB: 1CZ4_A 1CZ5_A 3CF3_C 3CF1_A 3CF2_A 1S3S_D 1E32_A 1R7R_A 2PJH_B 1CR5_B ....
Probab=98.92 E-value=6.5e-10 Score=94.14 Aligned_cols=70 Identities=21% Similarity=0.371 Sum_probs=59.3
Q ss_pred hhhcchhhhH-HHHHHHhCCCCCCccceEEEEecceEEEEEEecC-C----CCcchHHHHHHHhhCceecccCCCceeEE
Q 047219 107 EIAKKERQRI-EELLKRKGMHYGSCPTFTVAVKGQKVTIKFQVPP-A----CEIPQLIANLVSHLGLKVEEHGGGSDMGL 180 (567)
Q Consensus 107 ~~~~~~~~~~-~~~~~~~g~~~g~~~~~~v~~~g~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~v 180 (567)
+.+++++++| ++.|++||+.+||+ |.|.|.++|+|+|||. + .+.+++++.+|+|+|+++|| .|+|
T Consensus 11 ~~~~~n~v~v~~~~m~~l~l~~gd~----v~i~g~~~tv~~v~~~~~~~~~~g~I~l~~~~R~n~~v~igd-----~V~V 81 (87)
T PF02359_consen 11 EDAGTNCVRVSPEDMEELGLFPGDV----VLISGKRKTVAFVFPDRPDDSPPGVIRLSGIQRKNAGVSIGD-----RVTV 81 (87)
T ss_dssp HHHCTTEEEEEHHHHHCTTT-TTEE----EEEETTTEEEEEEEEECCSTTCTTEEEE-HHHHHHCT--TTS-----EEEE
T ss_pred HhCCCCEEEEcHHHHHHcCCCCccE----EEEeCCceEEEEEEECCCCCCCCCEEEECHHHHhhCCcCCCC-----EEEE
Confidence 4589999999 79999999999999 9999998999999985 2 25689999999999999999 9999
Q ss_pred Eeecc
Q 047219 181 RAWDS 185 (567)
Q Consensus 181 ~~~~~ 185 (567)
++++.
T Consensus 82 ~~~~~ 86 (87)
T PF02359_consen 82 RPYDP 86 (87)
T ss_dssp EEETT
T ss_pred EECCC
Confidence 99764
No 222
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.91 E-value=6.7e-08 Score=97.18 Aligned_cols=85 Identities=25% Similarity=0.371 Sum_probs=62.8
Q ss_pred CcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC-------------CCCCChHHHhccceE
Q 047219 389 GAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR-------------KQDLDPALISRFDSM 455 (567)
Q Consensus 389 ~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~-------------~~~Ld~aL~sRf~~~ 455 (567)
+++|||||++.|.-. -+..|.+.++ .+-.-+||.+||+ |.-++++|+.|+ .+
T Consensus 297 PGVLFIDEVhMLDiE-----------cFTyL~kalE---S~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~I 361 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIE-----------CFTYLHKALE---SPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LI 361 (456)
T ss_pred CcceEeeehhhhhhH-----------HHHHHHHHhc---CCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eE
Confidence 499999999988522 2334444444 3445578888887 667899999999 88
Q ss_pred EEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHh
Q 047219 456 ITFGLPDHENRQEIAAQYAKH----LTKAELAELATA 488 (567)
Q Consensus 456 I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~ 488 (567)
|..-.++.++.++|++..++. +.++.+..++..
T Consensus 362 irt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~ 398 (456)
T KOG1942|consen 362 IRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEI 398 (456)
T ss_pred EeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhh
Confidence 888899999999999988764 455566666654
No 223
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.91 E-value=6.8e-08 Score=96.63 Aligned_cols=175 Identities=14% Similarity=0.179 Sum_probs=118.6
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC---
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG--- 353 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~--- 353 (567)
-+++.+.+.++....++.... ...-.++++|||+|+||.|.+-++-+++.......
T Consensus 10 ksl~~l~~~~e~~~~Lksl~~---------------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki 68 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLSS---------------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI 68 (351)
T ss_pred chhhhcccHHHHHHHHHHhcc---------------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheee
Confidence 456778888888777765432 12236899999999999999999999985310000
Q ss_pred ------------c--------CeEEechhhHHhhhhch-hHHHHHHHHHHHh--------cCCCCcEEEEcCcchhhhhh
Q 047219 354 ------------V--------PLMYVPLEVVMSKYYGE-SERLLGKVFSLAN--------ELPNGAIIFLDEVDSFAVAR 404 (567)
Q Consensus 354 ------------~--------~~~~i~~~~l~s~~~G~-~~~~l~~~f~~A~--------~~a~~~ILfIDEID~L~~~~ 404 (567)
+ ..+.++.++ .|. ..--+.++.++.. ...+..+++|.|+|.|..+.
T Consensus 69 ~~~t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dA 143 (351)
T KOG2035|consen 69 ETRTFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDA 143 (351)
T ss_pred eeEEEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHH
Confidence 0 112222222 121 1122233333221 11235799999999997664
Q ss_pred hhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHH
Q 047219 405 DSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKA 480 (567)
Q Consensus 405 q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~ 480 (567)
|.. |-+.|+. ..+++++|..+|....+-+.+++|| ..+.++.|+.++...++...+.+ ++.+
T Consensus 144 Q~a-----------LRRTMEk--Ys~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~ 209 (351)
T KOG2035|consen 144 QHA-----------LRRTMEK--YSSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKE 209 (351)
T ss_pred HHH-----------HHHHHHH--HhcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHH
Confidence 443 4444553 3568899999999999999999999 89999999999999999988775 4666
Q ss_pred HHHHHHHhccC
Q 047219 481 ELAELATATEE 491 (567)
Q Consensus 481 ~l~~la~~t~g 491 (567)
.+.++++...|
T Consensus 210 ~l~rIa~kS~~ 220 (351)
T KOG2035|consen 210 LLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHhcc
Confidence 77777777654
No 224
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.89 E-value=1.3e-08 Score=106.91 Aligned_cols=84 Identities=15% Similarity=0.066 Sum_probs=54.6
Q ss_pred CCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc--ccCCcEEEEEeeCCC-------CCCChHHHhccceEEE
Q 047219 387 PNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF--EQDKKVVVIAATNRK-------QDLDPALISRFDSMIT 457 (567)
Q Consensus 387 a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~--~~~~~viVIaaTN~~-------~~Ld~aL~sRf~~~I~ 457 (567)
++.||+-|+|+.+...+.+..++.+.++..-. +.+. ..+.+.+||+++|.. ....++|++|| ..+.
T Consensus 235 aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~----~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~-~~i~ 309 (361)
T smart00763 235 ANRGILEFVEMFKADIKFLHPLLTATQEGNIK----GTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRI-IKVK 309 (361)
T ss_pred ccCceEEEeehhcCCHHHHHHHhhhhhcceEe----cCCcccccccceEEEEeCCHHHHhhhhccccchhhhhce-EEEe
Confidence 34589999999988755444443333321000 1111 233467899999985 35689999999 5888
Q ss_pred ecCC-CHHHHHHHHHHHHH
Q 047219 458 FGLP-DHENRQEIAAQYAK 475 (567)
Q Consensus 458 i~~P-~~~eR~eIL~~~~~ 475 (567)
++.| +.++-.+|.+..+.
T Consensus 310 vpY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 310 VPYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred CCCcCCHHHHHHHHHHHhc
Confidence 8866 66777778776665
No 225
>PRK12377 putative replication protein; Provisional
Probab=98.89 E-value=1e-08 Score=103.34 Aligned_cols=125 Identities=24% Similarity=0.261 Sum_probs=74.7
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhH--HHHHHHHHHHhcCCCCcEEEEcCcch
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESE--RLLGKVFSLANELPNGAIIFLDEVDS 399 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~--~~l~~~f~~A~~~a~~~ILfIDEID~ 399 (567)
..+++|+||||||||+||.+|++++... +..+.+++..++...+..... .....+++... ...+|+|||++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~---g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~---~~dLLiIDDlg~ 174 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK---GRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELC---KVDLLVLDEIGI 174 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhc---CCCEEEEcCCCC
Confidence 4689999999999999999999998644 567888888887775432110 01122333322 247999999976
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC-----CCChHHHhccc----eEEEecCCC
Q 047219 400 FAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ-----DLDPALISRFD----SMITFGLPD 462 (567)
Q Consensus 400 L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~-----~Ld~aL~sRf~----~~I~i~~P~ 462 (567)
.... +..++ .|...++.. .....-+|.|||... .+...+++|+- ..+.|.-++
T Consensus 175 ~~~s------~~~~~---~l~~ii~~R-~~~~~ptiitSNl~~~~l~~~~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 175 QRET------KNEQV---VLNQIIDRR-TASMRSVGMLTNLNHEAMSTLLGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred CCCC------HHHHH---HHHHHHHHH-HhcCCCEEEEcCCCHHHHHHHhhHHHHHHHhhCCCeEEEeCCcC
Confidence 5322 12222 333333322 122334567788632 35667777762 235555444
No 226
>PRK08181 transposase; Validated
Probab=98.84 E-value=3.1e-08 Score=101.11 Aligned_cols=127 Identities=17% Similarity=0.257 Sum_probs=76.7
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhch-hHHHHHHHHHHHhcCCCCcEEEEcCcch
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGE-SERLLGKVFSLANELPNGAIIFLDEVDS 399 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~-~~~~l~~~f~~A~~~a~~~ILfIDEID~ 399 (567)
...+++|+||||||||+||.++++++... +..+.+++..++...+... ........+.... ...+|+|||++.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~---g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~---~~dLLIIDDlg~ 178 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN---GWRVLFTRTTDLVQKLQVARRELQLESAIAKLD---KFDLLILDDLAY 178 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc---CCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh---cCCEEEEecccc
Confidence 45689999999999999999999987543 6678888888887765321 1112223333333 246999999998
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC----------CCChHHHhcc---ceEEEecCCCHH
Q 047219 400 FAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ----------DLDPALISRF---DSMITFGLPDHE 464 (567)
Q Consensus 400 L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~----------~Ld~aL~sRf---~~~I~i~~P~~~ 464 (567)
+....+. . ..|+..++..... --+|.|||.+. .+..++++|+ ...+.+.-.+.+
T Consensus 179 ~~~~~~~------~---~~Lf~lin~R~~~--~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R 245 (269)
T PRK08181 179 VTKDQAE------T---SVLFELISARYER--RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYR 245 (269)
T ss_pred ccCCHHH------H---HHHHHHHHHHHhC--CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccch
Confidence 7654221 1 2333333322222 24677777622 1335566665 235555554444
No 227
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.83 E-value=2.4e-08 Score=100.50 Aligned_cols=125 Identities=19% Similarity=0.264 Sum_probs=78.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchh---HHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGES---ERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~---~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
..+++|+|+||||||+|+.+|++++... +..+.+++..++...+.... ......+++... ...+|+|||++
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~---g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~---~~dlLvIDDig 172 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR---GKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS---NVDLLVIDEIG 172 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc---cCCEEEEeCCC
Confidence 3589999999999999999999998554 56788888888877554321 111223444333 24699999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC-----CCChHHHhccc----eEEEecCCC
Q 047219 399 SFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ-----DLDPALISRFD----SMITFGLPD 462 (567)
Q Consensus 399 ~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~-----~Ld~aL~sRf~----~~I~i~~P~ 462 (567)
..... +....++..++. . .......+|.+||... .+.+.+.+|+. ..+.|.-++
T Consensus 173 ~~~~s------~~~~~~l~~Ii~---~-Ry~~~~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 173 VQTES------RYEKVIINQIVD---R-RSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred CCCCC------HHHHHHHHHHHH---H-HHhCCCCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeCCc
Confidence 86422 222233333332 2 1223446777888632 36677777762 256665544
No 228
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.83 E-value=2.2e-08 Score=105.05 Aligned_cols=127 Identities=21% Similarity=0.271 Sum_probs=75.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhch---hHHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGE---SERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~---~~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
..+++|+||+|||||+||.+||+++... +..+++++..++...+... ........++... ..-+|+|||++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~---g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~---~~DLLIIDDlG 256 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDR---GKSVIYRTADELIEILREIRFNNDKELEEVYDLLI---NCDLLIIDDLG 256 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc---cCCEEEEeccC
Confidence 4789999999999999999999998544 6678899988887755221 0011111123322 24699999998
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC-CC----CCChHHHhccc---eEEEecCCCHH
Q 047219 399 SFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR-KQ----DLDPALISRFD---SMITFGLPDHE 464 (567)
Q Consensus 399 ~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~-~~----~Ld~aL~sRf~---~~I~i~~P~~~ 464 (567)
...... . ....|...++..... +-.+|.|||. +. .+++.+.+|+. ..+.|.-.+.+
T Consensus 257 ~e~~t~------~---~~~~Lf~iin~R~~~-~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G~d~R 320 (329)
T PRK06835 257 TEKITE------F---SKSELFNLINKRLLR-QKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYGEDIR 320 (329)
T ss_pred CCCCCH------H---HHHHHHHHHHHHHHC-CCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecCcChh
Confidence 764331 1 113333443332222 2246667775 22 35678888872 24555444433
No 229
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.80 E-value=4.5e-08 Score=95.95 Aligned_cols=184 Identities=20% Similarity=0.316 Sum_probs=96.6
Q ss_pred cCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec--
Q 047219 283 AGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP-- 360 (567)
Q Consensus 283 iG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~-- 360 (567)
+|.+...+.|.+.+. ......++|+||.|+|||++++.+.+......+ ..+++.
T Consensus 2 ~gR~~el~~l~~~l~---------------------~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~---~~~y~~~~ 57 (234)
T PF01637_consen 2 FGREKELEKLKELLE---------------------SGPSQHILLYGPRGSGKTSLLKEFINELKEKGY---KVVYIDFL 57 (234)
T ss_dssp -S-HHHHHHHHHCHH---------------------H--SSEEEEEESTTSSHHHHHHHHHHHCT--EE---CCCHHCCT
T ss_pred CCHHHHHHHHHHHHH---------------------hhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC---cEEEEecc
Confidence 577778887777654 345688999999999999999999998843211 111111
Q ss_pred ----hhhHHhh------------hh-----------------chhHHHHHHHHHHHhcCCCCcEEEEcCcchhh-hhhhh
Q 047219 361 ----LEVVMSK------------YY-----------------GESERLLGKVFSLANELPNGAIIFLDEVDSFA-VARDS 406 (567)
Q Consensus 361 ----~~~l~s~------------~~-----------------G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~-~~~q~ 406 (567)
....... .+ ......+..+++.........+|+|||++.+. .....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~ 137 (234)
T PF01637_consen 58 EESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEED 137 (234)
T ss_dssp TBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTT
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccch
Confidence 0000000 00 11234456666666665545899999999998 22111
Q ss_pred hhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCC------CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh---
Q 047219 407 EMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRK------QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL--- 477 (567)
Q Consensus 407 ~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~------~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~--- 477 (567)
...+..|...++......++.+|.++... ..-...+..|+.. +.++..+.++-.+++...+...
T Consensus 138 ------~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~~~~ 210 (234)
T PF01637_consen 138 ------KDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKELIKL 210 (234)
T ss_dssp ------HHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC---
T ss_pred ------HHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHhhcc
Confidence 12223333333332233444444443321 1223456778855 9999999999999999876543
Q ss_pred --CHHHHHHHHHhccCCCHHHHH
Q 047219 478 --TKAELAELATATEEMSGRDIR 498 (567)
Q Consensus 478 --~~~~l~~la~~t~g~s~~dL~ 498 (567)
....++.+...+.|. |+-|.
T Consensus 211 ~~~~~~~~~i~~~~gG~-P~~l~ 232 (234)
T PF01637_consen 211 PFSDEDIEEIYSLTGGN-PRYLQ 232 (234)
T ss_dssp ---HHHHHHHHHHHTT--HHHHH
T ss_pred cCCHHHHHHHHHHhCCC-HHHHh
Confidence 556777777776653 44443
No 230
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=1.2e-07 Score=97.27 Aligned_cols=126 Identities=15% Similarity=0.131 Sum_probs=87.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC----------CCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhc---
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMP----------WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANE--- 385 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~----------~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~--- 385 (567)
...++.+||+||.|+||+.+|.++|+.+.+.. ...-.+..+.... .+..+ .-+.++.+.+.+..
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~ 92 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPY 92 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCcc
Confidence 57788999999999999999999999985421 0011222221110 00001 12334444444332
Q ss_pred CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCC
Q 047219 386 LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLP 461 (567)
Q Consensus 386 ~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P 461 (567)
.++..|++||++|.|... ..+.||+.++ +++.++++|..|+.++.+.|.++||| ..+.|+.+
T Consensus 93 e~~~kv~ii~~ad~mt~~-----------AaNaLLK~LE--EPp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 93 ESPYKIYIIHEADRMTLD-----------AISAFLKVLE--DPPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred CCCceEEEEechhhcCHH-----------HHHHHHHHhh--cCCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 234579999999999743 4578888888 47789999999999999999999999 78888654
No 231
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=1e-07 Score=99.93 Aligned_cols=140 Identities=18% Similarity=0.203 Sum_probs=94.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC-C------------------CcCeEEechhhH---Hhhh-hchhHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-Q------------------GVPLMYVPLEVV---MSKY-YGESERL 375 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-~------------------~~~~~~i~~~~l---~s~~-~G~~~~~ 375 (567)
.+.+..+||+||+|+|||++|+.+|+.+.+..- . .-.++.+....- .++. -.-.-+.
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 477889999999999999999999999854210 0 122344432110 0000 0012345
Q ss_pred HHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhcc
Q 047219 376 LGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRF 452 (567)
Q Consensus 376 l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf 452 (567)
++.+.+.+.. .+...|++||+++.|... ..+.+++.++.. +.++.+|.+|+.++.+.+.+++||
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-----------a~naLLk~LEep--~~~~~~Ilvth~~~~ll~ti~SRc 164 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ-----------AANSLLKVLEEP--PPQVVFLLVSHAADKVLPTIKSRC 164 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH-----------HHHHHHHHHHhC--cCCCEEEEEeCChHhChHHHHHHh
Confidence 6666555543 234579999999999744 335666666643 345778888888899999999999
Q ss_pred ceEEEecCCCHHHHHHHHHH
Q 047219 453 DSMITFGLPDHENRQEIAAQ 472 (567)
Q Consensus 453 ~~~I~i~~P~~~eR~eIL~~ 472 (567)
..+.|..|+.++..+.+..
T Consensus 165 -~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 165 -RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred -hhhcCCCCCHHHHHHHHHh
Confidence 8999999999887777654
No 232
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.75 E-value=5.4e-08 Score=107.15 Aligned_cols=145 Identities=23% Similarity=0.283 Sum_probs=90.8
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC-CcC------eEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEE
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ-GVP------LMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIF 393 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~-~~~------~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILf 393 (567)
..-+|||+|.||||||.+.+++|+.+++..+. |.- ..++.-.--...++-+ ..|.-.+.+|+.+
T Consensus 461 ~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtrd~dtkqlVLe---------sGALVLSD~GiCC 531 (804)
T KOG0478|consen 461 GDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTKDPDTRQLVLE---------SGALVLSDNGICC 531 (804)
T ss_pred ccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEecCccceeeee---------cCcEEEcCCceEE
Confidence 34689999999999999999999999764221 000 0011000000001111 1122345579999
Q ss_pred EcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC-------------CCChHHHhccceEEEe-c
Q 047219 394 LDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ-------------DLDPALISRFDSMITF-G 459 (567)
Q Consensus 394 IDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~-------------~Ld~aL~sRf~~~I~i-~ 459 (567)
|||+|+|....++.++++++...-.+-+.+--...+.+.-|||++|+.+ .|+|.|++|||.++-+ +
T Consensus 532 IDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD 611 (804)
T KOG0478|consen 532 IDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLD 611 (804)
T ss_pred chhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEec
Confidence 9999999888888888887653323322222123467889999999622 4889999999876544 6
Q ss_pred CCCHHHHHHHHHHHH
Q 047219 460 LPDHENRQEIAAQYA 474 (567)
Q Consensus 460 ~P~~~eR~eIL~~~~ 474 (567)
.||...-+.+..++.
T Consensus 612 ~~DE~~Dr~La~Hiv 626 (804)
T KOG0478|consen 612 KPDERSDRRLADHIV 626 (804)
T ss_pred CcchhHHHHHHHHHH
Confidence 777664444444433
No 233
>PRK06526 transposase; Provisional
Probab=98.72 E-value=2.8e-08 Score=100.72 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=52.2
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhch-hHHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGE-SERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~-~~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
..+.+++|+||||||||++|.+|+.++... +..+.+++..++...+... ....+...+.. .....+|+|||++
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~---g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~---l~~~dlLIIDD~g 169 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQA---GHRVLFATAAQWVARLAAAHHAGRLQAELVK---LGRYPLLIVDEVG 169 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHC---CCchhhhhHHHHHHHHHHHHhcCcHHHHHHH---hccCCEEEEcccc
Confidence 346789999999999999999999987543 5566677777766654321 11122222222 2235799999999
Q ss_pred hhhhh
Q 047219 399 SFAVA 403 (567)
Q Consensus 399 ~L~~~ 403 (567)
.+...
T Consensus 170 ~~~~~ 174 (254)
T PRK06526 170 YIPFE 174 (254)
T ss_pred cCCCC
Confidence 87543
No 234
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.71 E-value=7.9e-07 Score=92.13 Aligned_cols=151 Identities=12% Similarity=0.092 Sum_probs=101.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-------CCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcC----C
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-------WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANEL----P 387 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-------~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~----a 387 (567)
...++.+||+|+.|+||+.+|+.+++.+.+.. ....++..++... ... .-+.++.+.+..... +
T Consensus 15 ~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g---~~i--~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 15 NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD---KDL--SKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC---CcC--CHHHHHHHHHHhccCCcccC
Confidence 45677889999999999999999999984311 0011334443100 101 113445554444322 2
Q ss_pred CCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHH
Q 047219 388 NGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQ 467 (567)
Q Consensus 388 ~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~ 467 (567)
+..|++||++|.|... ..+.|++.++. ++..+++|.+|+.++.+-+.+++|| ..++|..++.++..
T Consensus 90 ~~KvvII~~~e~m~~~-----------a~NaLLK~LEE--Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 90 QKKILIIKNIEKTSNS-----------LLNALLKTIEE--PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred CceEEEEecccccCHH-----------HHHHHHHHhhC--CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 5689999999998532 44678888884 6778888888888899999999999 89999999988877
Q ss_pred HHHHHHHHhhCHHHHHHHHHhcc
Q 047219 468 EIAAQYAKHLTKAELAELATATE 490 (567)
Q Consensus 468 eIL~~~~~~~~~~~l~~la~~t~ 490 (567)
+.+... ....+....++....
T Consensus 156 ~~l~~~--~~~~~~a~~~a~~~~ 176 (299)
T PRK07132 156 AKLLSK--NKEKEYNWFYAYIFS 176 (299)
T ss_pred HHHHHc--CCChhHHHHHHHHcC
Confidence 766543 344444444444433
No 235
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.70 E-value=2e-08 Score=109.67 Aligned_cols=208 Identities=16% Similarity=0.163 Sum_probs=125.7
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCe-
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPL- 356 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~- 356 (567)
.|-.|.|++.+|.-|.-++- -...+-.......+...+|+|.|.||||||-+.+++++.+++..+..-+.
T Consensus 343 l~PsIyGhe~VK~GilL~Lf---------GGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaS 413 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLF---------GGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKAS 413 (764)
T ss_pred hCccccchHHHHhhHHHHHh---------CCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCccc
Confidence 35568888888887754332 11111111122245567899999999999999999999987652221111
Q ss_pred ------EEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 357 ------MYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 357 ------~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
..+.-.+....|.-+ ..|.-.+.+||.+|||+|+|..+.|..+++++++..-.+-+.+-....+.
T Consensus 414 SaAGLTaaVvkD~esgdf~iE---------AGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 414 SAAGLTAAVVKDEESGDFTIE---------AGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred ccccceEEEEecCCCCceeee---------cCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecc
Confidence 001001111111111 11224456899999999999988788888877653333333222223456
Q ss_pred cEEEEEeeCCCC-------------CCChHHHhccceEEEe-cCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHH
Q 047219 431 KVVVIAATNRKQ-------------DLDPALISRFDSMITF-GLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRD 496 (567)
Q Consensus 431 ~viVIaaTN~~~-------------~Ld~aL~sRf~~~I~i-~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~d 496 (567)
+.-||||+|+.. .+++.+++|||..+-+ +-|+...-..|-++.+.... ..+........|+..+
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~--~i~~~~~~~~~~~~e~ 562 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHR--GIDDATERVCVYTLEQ 562 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhc--cccccccccccccHHH
Confidence 778999999833 5889999999885544 78888877777776665311 1111112224567777
Q ss_pred HHHHHHHHH
Q 047219 497 IRDVCQQAE 505 (567)
Q Consensus 497 L~~L~~~a~ 505 (567)
++..+.+|.
T Consensus 563 vrkYi~yAR 571 (764)
T KOG0480|consen 563 VRKYIRYAR 571 (764)
T ss_pred HHHHHHHHH
Confidence 777777665
No 236
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.3e-07 Score=95.87 Aligned_cols=77 Identities=22% Similarity=0.405 Sum_probs=55.9
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHH-HHH-HHHHHHhcCCCCcEEEEcCcc
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESER-LLG-KVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~-~l~-~~f~~A~~~a~~~ILfIDEID 398 (567)
.+.+++|+||||||||+||-||++++... +..+.+++.++++.++-..... ... .+.... . ..-+|+|||+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~---g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l-~--~~dlLIiDDlG 177 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA---GISVLFITAPDLLSKLKAAFDEGRLEEKLLREL-K--KVDLLIIDDIG 177 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh-h--cCCEEEEeccc
Confidence 67899999999999999999999998643 7789999999998876433221 111 111112 2 24699999999
Q ss_pred hhhhh
Q 047219 399 SFAVA 403 (567)
Q Consensus 399 ~L~~~ 403 (567)
.....
T Consensus 178 ~~~~~ 182 (254)
T COG1484 178 YEPFS 182 (254)
T ss_pred CccCC
Confidence 87544
No 237
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.65 E-value=1.3e-07 Score=98.28 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=52.8
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhH-HHHHHHHHHHhcCCCCcEEEEcCcch
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESE-RLLGKVFSLANELPNGAIIFLDEVDS 399 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~-~~l~~~f~~A~~~a~~~ILfIDEID~ 399 (567)
..++++|+|++|||||+||.|+++++... +..+.++..+++...+..... ..+...++... ...+|+|||+..
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~---g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~---~~dlLiIDDiG~ 228 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKK---GVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK---EAPVLMLDDIGA 228 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc---CCCEEEEecCCC
Confidence 46799999999999999999999998644 667788888777665432211 11223333332 246999999986
Q ss_pred hh
Q 047219 400 FA 401 (567)
Q Consensus 400 L~ 401 (567)
-.
T Consensus 229 e~ 230 (306)
T PRK08939 229 EQ 230 (306)
T ss_pred cc
Confidence 54
No 238
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.6e-06 Score=89.38 Aligned_cols=163 Identities=17% Similarity=0.208 Sum_probs=100.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCCcCeEEec-hhhHHhh------hh---ch--hHHHHHHHHHHHhc
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQGVPLMYVP-LEVVMSK------YY---GE--SERLLGKVFSLANE 385 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~~~~~~i~-~~~l~s~------~~---G~--~~~~l~~~f~~A~~ 385 (567)
.+.+..+||+|| +||+++|+++|+.+.+.. ....+|-... |..+... ++ |. .-+.++.+.+.+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 577889999996 689999999999885431 1111221110 1111100 00 11 12445555444332
Q ss_pred ---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCC
Q 047219 386 ---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPD 462 (567)
Q Consensus 386 ---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~ 462 (567)
.++..|++||++|.|... ..+.||+.++ +++.++++|.+|+.++.+-|.++||| ..+.|+. +
T Consensus 99 ~p~~~~~kV~II~~ad~m~~~-----------AaNaLLKtLE--EPp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~-~ 163 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHVN-----------AANSLLKVIE--EPQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK-N 163 (290)
T ss_pred CcccCCcEEEEeehhhhcCHH-----------HHHHHHHHhc--CCCCCeEEEEEECChhhCchHHHHcc-eeeeCCC-c
Confidence 234579999999999633 4578888888 46678999999999999999999999 8888965 5
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHH
Q 047219 463 HENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 463 ~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~ 502 (567)
.+...+++.. ..........++. ..| +++....+..
T Consensus 164 ~~~~~~~L~~--~g~~~~~a~~la~-~~~-s~~~A~~l~~ 199 (290)
T PRK07276 164 EAYLIQLLEQ--KGLLKTQAELLAK-LAQ-STSEAEKLAQ 199 (290)
T ss_pred HHHHHHHHHH--cCCChHHHHHHHH-HCC-CHHHHHHHhC
Confidence 5544444432 1233333333333 334 5555555553
No 239
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.64 E-value=9.7e-07 Score=90.53 Aligned_cols=207 Identities=18% Similarity=0.287 Sum_probs=117.0
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC---CCCCcCe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM---PWQGVPL 356 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~---~~~~~~~ 356 (567)
+.-+|+..+.+.+.. ++..+.+|. .....++||+|++|.|||++++.+.+..... ....+|+
T Consensus 34 ~rWIgY~~A~~~L~~-L~~Ll~~P~--------------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PV 98 (302)
T PF05621_consen 34 DRWIGYPRAKEALDR-LEELLEYPK--------------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPV 98 (302)
T ss_pred CCeecCHHHHHHHHH-HHHHHhCCc--------------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccE
Confidence 456899988877755 445555663 4556789999999999999999999876432 1123566
Q ss_pred EEechhh--HHhhhh-------c-------hhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHH
Q 047219 357 MYVPLEV--VMSKYY-------G-------ESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLL 420 (567)
Q Consensus 357 ~~i~~~~--l~s~~~-------G-------~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL 420 (567)
+++..+. -...+| | ...+....+....+... .-+|+|||+|.+..... ...+.+++.|-
T Consensus 99 v~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~-vrmLIIDE~H~lLaGs~----~~qr~~Ln~LK 173 (302)
T PF05621_consen 99 VYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLG-VRMLIIDEFHNLLAGSY----RKQREFLNALK 173 (302)
T ss_pred EEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcC-CcEEEeechHHHhcccH----HHHHHHHHHHH
Confidence 6665531 111111 1 01111222233333443 47999999999753321 11223333333
Q ss_pred HhhcCcccCCcEEEEEeeCC--CCCCChHHHhccceEEEecCCCH-HHHHHHHHHHHHhhC---------HHHHHHHHHh
Q 047219 421 RQIDGFEQDKKVVVIAATNR--KQDLDPALISRFDSMITFGLPDH-ENRQEIAAQYAKHLT---------KAELAELATA 488 (567)
Q Consensus 421 ~~ld~~~~~~~viVIaaTN~--~~~Ld~aL~sRf~~~I~i~~P~~-~eR~eIL~~~~~~~~---------~~~l~~la~~ 488 (567)
...+.+ .-.++.++|-.. .-.-|+.|.+|| ..+.++.... ++...++..+-..++ .+....+...
T Consensus 174 ~L~NeL--~ipiV~vGt~~A~~al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~ 250 (302)
T PF05621_consen 174 FLGNEL--QIPIVGVGTREAYRALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHER 250 (302)
T ss_pred HHhhcc--CCCeEEeccHHHHHHhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Confidence 333222 233444444322 224578999999 6677765543 333444444433322 2345677778
Q ss_pred ccCCCHHHHHHHHHHHHHHHHH
Q 047219 489 TEEMSGRDIRDVCQQAERSWAS 510 (567)
Q Consensus 489 t~g~s~~dL~~L~~~a~~~a~~ 510 (567)
+.|..| ++..+++.|+..|.+
T Consensus 251 s~G~iG-~l~~ll~~aA~~AI~ 271 (302)
T PF05621_consen 251 SEGLIG-ELSRLLNAAAIAAIR 271 (302)
T ss_pred cCCchH-HHHHHHHHHHHHHHh
Confidence 777655 788888887765544
No 240
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.64 E-value=2.2e-07 Score=104.67 Aligned_cols=177 Identities=24% Similarity=0.292 Sum_probs=105.7
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC-------
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ------- 352 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~------- 352 (567)
-.|-|++.+|+.|.-++-- ......-.....+..-+|||.|.||||||.|.+.+++.+++..+.
T Consensus 286 PsIyG~e~VKkAilLqLfg---------Gv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~ 356 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFG---------GVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA 356 (682)
T ss_pred ccccCcHHHHHHHHHHhcC---------CCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc
Confidence 4578898888776533311 111000000013345789999999999999999999998764221
Q ss_pred -CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc
Q 047219 353 -GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 353 -~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
+.....+.... .++|+-+. .|.-.+.+||++|||+|+|.......+++++++..-.+-+..-....+..
T Consensus 357 ~GLTAav~rd~~-tge~~Lea---------GALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnAR 426 (682)
T COG1241 357 AGLTAAVVRDKV-TGEWVLEA---------GALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNAR 426 (682)
T ss_pred cCceeEEEEccC-CCeEEEeC---------CEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchh
Confidence 11111111111 11121111 12234568999999999998877777777765522222222211134567
Q ss_pred EEEEEeeCCCC-------------CCChHHHhccceEEEe-cCCCHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRKQ-------------DLDPALISRFDSMITF-GLPDHENRQEIAAQYAK 475 (567)
Q Consensus 432 viVIaaTN~~~-------------~Ld~aL~sRf~~~I~i-~~P~~~eR~eIL~~~~~ 475 (567)
+-|+||+|+.. +|++.|++|||..+.+ ..|+.+.-.++..+.+.
T Consensus 427 csvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 427 CSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred hhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHH
Confidence 88999999843 4889999999987766 57776655555555443
No 241
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=1e-06 Score=94.00 Aligned_cols=197 Identities=17% Similarity=0.238 Sum_probs=127.5
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
..+.|.+..+..+++++..++ ..+.+.++.+.|-||||||.+..-+-....... .....+++
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hl-----------------e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-~~~~~v~i 211 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHL-----------------ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-KSPVTVYI 211 (529)
T ss_pred CCccchHHHHHHHHHHHHhhh-----------------hcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-ccceeEEE
Confidence 568999999999999887542 256788999999999999999887766553221 02234566
Q ss_pred chhh------HHhhhhch---------hHHHHHHHHHH-HhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhh
Q 047219 360 PLEV------VMSKYYGE---------SERLLGKVFSL-ANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQI 423 (567)
Q Consensus 360 ~~~~------l~s~~~G~---------~~~~l~~~f~~-A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~l 423 (567)
+|.. ++.+.++. .+......|+. .......-++++||+|.|....+..+ ..+..+-
T Consensus 212 nc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vL--------y~lFewp 283 (529)
T KOG2227|consen 212 NCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVL--------YTLFEWP 283 (529)
T ss_pred eeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccccee--------eeehhcc
Confidence 6653 22222221 11122233332 22233457999999999985544332 3333222
Q ss_pred cCcccCCcEEEEEeeCCCCC---CChHHHhcc---ceEEEecCCCHHHHHHHHHHHHHhh-----CHHHHHHHHHhccCC
Q 047219 424 DGFEQDKKVVVIAATNRKQD---LDPALISRF---DSMITFGLPDHENRQEIAAQYAKHL-----TKAELAELATATEEM 492 (567)
Q Consensus 424 d~~~~~~~viVIaaTN~~~~---Ld~aL~sRf---~~~I~i~~P~~~eR~eIL~~~~~~~-----~~~~l~~la~~t~g~ 492 (567)
. ..+..+++|+.+|..+. +-+.|..|+ ...+.|++++.++..+|+...+... ....++-.|+...+.
T Consensus 284 ~--lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~ 361 (529)
T KOG2227|consen 284 K--LPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAP 361 (529)
T ss_pred c--CCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccC
Confidence 2 24568899999997554 444444443 4589999999999999999988753 234566777777776
Q ss_pred CHHHHHHHHHHHH
Q 047219 493 SGRDIRDVCQQAE 505 (567)
Q Consensus 493 s~~dL~~L~~~a~ 505 (567)
+| |++.++....
T Consensus 362 SG-DlRkaLdv~R 373 (529)
T KOG2227|consen 362 SG-DLRKALDVCR 373 (529)
T ss_pred ch-hHHHHHHHHH
Confidence 66 8887766544
No 242
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.63 E-value=1.6e-06 Score=96.31 Aligned_cols=182 Identities=23% Similarity=0.299 Sum_probs=114.2
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCC----CCCCCcCeEEechhhHHh----------hhhch------hHHHHHHHH
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGA----MPWQGVPLMYVPLEVVMS----------KYYGE------SERLLGKVF 380 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~----~~~~~~~~~~i~~~~l~s----------~~~G~------~~~~l~~~f 380 (567)
....+++.|-||||||.+++.+.+++.. .......++.|++-.+.+ .+-|+ .-..+..-|
T Consensus 421 ~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f 500 (767)
T KOG1514|consen 421 LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRF 500 (767)
T ss_pred CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhh
Confidence 3457999999999999999999997742 223355677777644322 11222 122334444
Q ss_pred HHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCC----CChHHHhccc-eE
Q 047219 381 SLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQD----LDPALISRFD-SM 455 (567)
Q Consensus 381 ~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~----Ld~aL~sRf~-~~ 455 (567)
.......+.+||+|||+|.|....| .++..|+.|-. ..+..++||+..|..+. |....-+|++ ..
T Consensus 501 ~~~k~~~~~~VvLiDElD~Lvtr~Q--------dVlYn~fdWpt--~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tR 570 (767)
T KOG1514|consen 501 TVPKPKRSTTVVLIDELDILVTRSQ--------DVLYNIFDWPT--LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTR 570 (767)
T ss_pred ccCCCCCCCEEEEeccHHHHhcccH--------HHHHHHhcCCc--CCCCceEEEEecccccCHHHHhccchhhhcccee
Confidence 4333445579999999999976543 45555666544 34568888888886432 2333334653 48
Q ss_pred EEecCCCHHHHHHHHHHHHHhh---CHHHHHHHHHhccCCCHHHHH---HHHHHHHHHHHHHHH
Q 047219 456 ITFGLPDHENRQEIAAQYAKHL---TKAELAELATATEEMSGRDIR---DVCQQAERSWASKII 513 (567)
Q Consensus 456 I~i~~P~~~eR~eIL~~~~~~~---~~~~l~~la~~t~g~s~~dL~---~L~~~a~~~a~~r~i 513 (567)
+.|.+++..+..+|+...+... ..+..+-+++.....+| |.+ .+|+.|...+-.+..
T Consensus 571 i~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG-DaRraldic~RA~Eia~~~~~ 633 (767)
T KOG1514|consen 571 ICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG-DARRALDICRRAAEIAEERNV 633 (767)
T ss_pred eecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhhhcc
Confidence 8999999999999999887653 34444444555544444 333 345555554444444
No 243
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.63 E-value=1.5e-06 Score=87.86 Aligned_cols=108 Identities=22% Similarity=0.266 Sum_probs=69.8
Q ss_pred CcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC------------CCCCChHHHhccceEE
Q 047219 389 GAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR------------KQDLDPALISRFDSMI 456 (567)
Q Consensus 389 ~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~------------~~~Ld~aL~sRf~~~I 456 (567)
+++|||||+|.|.-..-+ .|-+.+++ .-.-++|++||+ |.-++-+|+.|+ ..|
T Consensus 289 pGVLFIDEvHMLDIEcFs-----------FlNrAlE~---d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~-lII 353 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFS-----------FLNRALEN---DMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRM-LII 353 (454)
T ss_pred cceEEEeeehhhhhHHHH-----------HHHHHhhh---ccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-hee
Confidence 499999999988543222 22222221 223367777776 667999999999 888
Q ss_pred EecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q 047219 457 TFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAERSWASK 511 (567)
Q Consensus 457 ~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r 511 (567)
...+++.++.++||+..+.. +..+.++.+......-+-+---.|+..+...+.+|
T Consensus 354 ~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~kr 412 (454)
T KOG2680|consen 354 STQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKR 412 (454)
T ss_pred ecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875 45555665555444333333344444444444443
No 244
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.62 E-value=3.5e-08 Score=94.73 Aligned_cols=76 Identities=21% Similarity=0.370 Sum_probs=51.2
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchh-HHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGES-ERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~-~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
....+++|+||||||||+||.++++++-.. +..+.+++.+++...+.... .......+..... ..+|+|||+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~---g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~---~dlLilDDlG 118 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK---GYSVLFITASDLLDELKQSRSDGSYEELLKRLKR---VDLLILDDLG 118 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT---SSCEEEETCT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC---CcceeEeecCceeccccccccccchhhhcCcccc---ccEecccccc
Confidence 456799999999999999999999987543 77889999998887654321 1112233333332 4699999998
Q ss_pred hhh
Q 047219 399 SFA 401 (567)
Q Consensus 399 ~L~ 401 (567)
...
T Consensus 119 ~~~ 121 (178)
T PF01695_consen 119 YEP 121 (178)
T ss_dssp SS-
T ss_pred eee
Confidence 654
No 245
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=8.9e-07 Score=95.31 Aligned_cols=144 Identities=25% Similarity=0.318 Sum_probs=95.3
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhH--HHHHHHHHHHhcCCCCcEEEEcCc
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESE--RLLGKVFSLANELPNGAIIFLDEV 397 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~--~~l~~~f~~A~~~a~~~ILfIDEI 397 (567)
.+-.++||+||||+|||+||-.+|..+ +.||+.+-.++-+..+- ++. ..+...|+.|++.. -+||++|+|
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S------~FPFvKiiSpe~miG~s-EsaKc~~i~k~F~DAYkS~-lsiivvDdi 607 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSS------DFPFVKIISPEDMIGLS-ESAKCAHIKKIFEDAYKSP-LSIIVVDDI 607 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhc------CCCeEEEeChHHccCcc-HHHHHHHHHHHHHHhhcCc-ceEEEEcch
Confidence 455789999999999999999999998 88898876555443221 222 34778999998775 599999999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC-cEEEEEeeCCCCCCC-hHHHhccceEEEecCCCH-HHHHHHHHH
Q 047219 398 DSFAVARDSEMHEATRRILSVLLRQIDGFEQDK-KVVVIAATNRKQDLD-PALISRFDSMITFGLPDH-ENRQEIAAQ 472 (567)
Q Consensus 398 D~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~-~viVIaaTN~~~~Ld-~aL~sRf~~~I~i~~P~~-~eR~eIL~~ 472 (567)
+.|..-. .-..++..-++..|+-.+....+.+ +..|++||....-|. -.++..|+..++++..+. ++..+++..
T Consensus 608 ErLiD~v-pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 608 ERLLDYV-PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred hhhhccc-ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 9985221 1112334445555665665544443 456666666543332 356678988888866544 555555553
No 246
>PF13173 AAA_14: AAA domain
Probab=98.57 E-value=4.5e-07 Score=82.08 Aligned_cols=120 Identities=18% Similarity=0.308 Sum_probs=70.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~ 402 (567)
+.++|+||+|||||++++.+++.+. ..-++++++..+.......... +...+...... ...+||||||+.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADPD--LLEYFLELIKP-GKKYIFIDEIQYLPD 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhhh--hHHHHHHhhcc-CCcEEEEehhhhhcc
Confidence 5689999999999999999998874 1245677776655442211111 22222222111 358999999998841
Q ss_pred hhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCC----CCCChHHHhccceEEEecCCCHHH
Q 047219 403 ARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRK----QDLDPALISRFDSMITFGLPDHEN 465 (567)
Q Consensus 403 ~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~----~~Ld~aL~sRf~~~I~i~~P~~~e 465 (567)
- ...+..+. +. ..++.+|.|+... ......|..|. ..+++.+.+.+|
T Consensus 76 ~---------~~~lk~l~---d~---~~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 76 W---------EDALKFLV---DN---GPNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred H---------HHHHHHHH---Hh---ccCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 1 12222222 21 1344555544332 23456677787 678888888765
No 247
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.56 E-value=2.4e-07 Score=103.96 Aligned_cols=139 Identities=14% Similarity=0.129 Sum_probs=91.5
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchh--HHHHHH---HHH-HHhcCCCCcEEEEcC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGES--ERLLGK---VFS-LANELPNGAIIFLDE 396 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~--~~~l~~---~f~-~A~~~a~~~ILfIDE 396 (567)
.+|+|.|++|||||+++++++..++. ..+|..++.+.-...++|.. +..+.. .++ .....++++||||||
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe 101 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPA----GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAM 101 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCC----CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecC
Confidence 68999999999999999999999864 34566666655555666642 111100 010 111234579999999
Q ss_pred cchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCC---CCCChHHHhccceEEEecCCCHHH
Q 047219 397 VDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRK---QDLDPALISRFDSMITFGLPDHEN 465 (567)
Q Consensus 397 ID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~---~~Ld~aL~sRf~~~I~i~~P~~~e 465 (567)
+..+.++.++.+.+.+++-...+.+....+..+.++.+|++.|.. +.|++.|+.||+..+.+..|+..+
T Consensus 102 ~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 102 AERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRD 173 (584)
T ss_pred cccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHH
Confidence 999987755554444433222222222233456789999985543 459999999999999999887554
No 248
>PRK06921 hypothetical protein; Provisional
Probab=98.54 E-value=3.2e-07 Score=93.71 Aligned_cols=73 Identities=25% Similarity=0.432 Sum_probs=48.2
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcch
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDS 399 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~ 399 (567)
...+++|+|+||||||+|+.+|++++.... +..+++++..++...+.... ......+.... ...+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~--g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~~---~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK--GVPVLYFPFVEGFGDLKDDF-DLLEAKLNRMK---KVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc--CceEEEEEHHHHHHHHHHHH-HHHHHHHHHhc---CCCEEEEecccc
Confidence 467899999999999999999999885321 45677888766655432211 11122222222 246999999954
No 249
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.52 E-value=4.3e-07 Score=92.99 Aligned_cols=146 Identities=17% Similarity=0.267 Sum_probs=82.9
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHh----------cCCCC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN----------ELPNG 389 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~----------~~a~~ 389 (567)
...+++||+||+|||||++++..-+.+.... .-...++.+.... ...+..+.+... .....
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~---~~~~~~~~s~~Tt------s~~~q~~ie~~l~k~~~~~~gP~~~k~ 101 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDK---YLVITINFSAQTT------SNQLQKIIESKLEKRRGRVYGPPGGKK 101 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHCSTTCC---EEEEEEES-TTHH------HHHHHHCCCTTECECTTEEEEEESSSE
T ss_pred HcCCcEEEECCCCCchhHHHHhhhccCCccc---cceeEeeccCCCC------HHHHHHHHhhcEEcCCCCCCCCCCCcE
Confidence 3468999999999999999998877664331 1123333332111 111111111100 11224
Q ss_pred cEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc-------cCCcEEEEEeeCCCC---CCChHHHhccceEEEec
Q 047219 390 AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE-------QDKKVVVIAATNRKQ---DLDPALISRFDSMITFG 459 (567)
Q Consensus 390 ~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~-------~~~~viVIaaTN~~~---~Ld~aL~sRf~~~I~i~ 459 (567)
.|+||||++.-.++.-+... .-+.+.+++....-+. .-.++.+|||+|+.. .+++.|.+.| .++.++
T Consensus 102 lv~fiDDlN~p~~d~ygtq~--~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~ 178 (272)
T PF12775_consen 102 LVLFIDDLNMPQPDKYGTQP--PIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIP 178 (272)
T ss_dssp EEEEEETTT-S---TTS--H--HHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE--
T ss_pred EEEEecccCCCCCCCCCCcC--HHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEec
Confidence 69999999865444322221 1244555554432221 124788899998743 4788999999 899999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q 047219 460 LPDHENRQEIAAQYAKHL 477 (567)
Q Consensus 460 ~P~~~eR~eIL~~~~~~~ 477 (567)
.|+.+....|+..++..+
T Consensus 179 ~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 179 YPSDESLNTIFSSILQSH 196 (272)
T ss_dssp --TCCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhhh
Confidence 999999999988877643
No 250
>PRK09183 transposase/IS protein; Provisional
Probab=98.52 E-value=3e-07 Score=93.50 Aligned_cols=79 Identities=15% Similarity=0.285 Sum_probs=53.3
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhch-hHHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGE-SERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~-~~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
....+++|+||||||||+||.+++...... +..+.+++..++...+... ....+...+..... ...+++|||++
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~---G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~--~~dlLiiDdlg 174 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRA---GIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVM--APRLLIIDEIG 174 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhc--CCCEEEEcccc
Confidence 446789999999999999999998875332 5667788877776544221 11223344443222 24699999998
Q ss_pred hhhhh
Q 047219 399 SFAVA 403 (567)
Q Consensus 399 ~L~~~ 403 (567)
.+...
T Consensus 175 ~~~~~ 179 (259)
T PRK09183 175 YLPFS 179 (259)
T ss_pred cCCCC
Confidence 86544
No 251
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.51 E-value=6.4e-06 Score=91.41 Aligned_cols=201 Identities=16% Similarity=0.208 Sum_probs=114.3
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
+...+.+.+||..+...+++++..++..+. +....+-+||+||||||||++++.+|+++...
T Consensus 11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~----------------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~-- 72 (519)
T PF03215_consen 11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFS----------------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFE-- 72 (519)
T ss_pred hhcCCCCHHHhhccHHHHHHHHHHHHHHhc----------------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCe--
Confidence 445667889999999999999988874311 13345578899999999999999999999432
Q ss_pred CCcCeEEe-chh----------hHHh------hhhchhHHHHHHH-HHHHhc----------CCCCcEEEEcCcchhhhh
Q 047219 352 QGVPLMYV-PLE----------VVMS------KYYGESERLLGKV-FSLANE----------LPNGAIIFLDEVDSFAVA 403 (567)
Q Consensus 352 ~~~~~~~i-~~~----------~l~s------~~~G~~~~~l~~~-f~~A~~----------~a~~~ILfIDEID~L~~~ 403 (567)
+.+- +.. +..+ .+... ...+..+ +..++. .....||+|||+-.+...
T Consensus 73 ----v~Ew~np~~~~~~~~~~~d~~s~~~~~~~f~sq-~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~ 147 (519)
T PF03215_consen 73 ----VQEWINPVSFRESDNQEDDFESDFNKFDEFLSQ-SDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHR 147 (519)
T ss_pred ----eEEecCCCCccccccccccccccccccccccch-hhhhccccccccccccccccCCCcCCCceEEEeeccccccch
Confidence 2211 000 0000 00000 0111111 111111 123579999999765433
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCcccCC-cEEEEEe-e------CCC--------CCCChHHHh--ccceEEEecCCCHHH
Q 047219 404 RDSEMHEATRRILSVLLRQIDGFEQDK-KVVVIAA-T------NRK--------QDLDPALIS--RFDSMITFGLPDHEN 465 (567)
Q Consensus 404 ~q~~l~~~~~~vl~~LL~~ld~~~~~~-~viVIaa-T------N~~--------~~Ld~aL~s--Rf~~~I~i~~P~~~e 465 (567)
.. ...++.+..++.. ... .+++|.+ + |.. ..|+++++. ++ ..|.|.+-...-
T Consensus 148 ~~----~~f~~~L~~~l~~-----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~ 217 (519)
T PF03215_consen 148 DT----SRFREALRQYLRS-----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTF 217 (519)
T ss_pred hH----HHHHHHHHHHHHc-----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHH
Confidence 22 2223333333332 122 6666666 1 111 146788877 44 688998877766
Q ss_pred HHHHHHHHHHhh----------C--HHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 047219 466 RQEIAAQYAKHL----------T--KAELAELATATEEMSGRDIRDVCQQAERSWA 509 (567)
Q Consensus 466 R~eIL~~~~~~~----------~--~~~l~~la~~t~g~s~~dL~~L~~~a~~~a~ 509 (567)
.+..|...+... + ...++.++..+ .+|||.+++.....+.
T Consensus 218 mkKaL~rI~~~E~~~~~~~~~~p~~~~~l~~I~~~s----~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 218 MKKALKRILKKEARSSSGKNKVPDKQSVLDSIAESS----NGDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHHHHHhhhhcCCccCCChHHHHHHHHHhc----CchHHHHHHHHHHHhc
Confidence 666666555432 1 12356666554 4599998887775554
No 252
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.49 E-value=1.2e-06 Score=87.64 Aligned_cols=136 Identities=19% Similarity=0.238 Sum_probs=84.6
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSF 400 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L 400 (567)
...+..++||+|||||.+++.+|+.+ +.+++.++|++.++- ..+..+|..+... ++.+++||++.|
T Consensus 31 ~~~~~~~~GpagtGKtetik~La~~l------G~~~~vfnc~~~~~~------~~l~ril~G~~~~--GaW~cfdefnrl 96 (231)
T PF12774_consen 31 LNLGGALSGPAGTGKTETIKDLARAL------GRFVVVFNCSEQMDY------QSLSRILKGLAQS--GAWLCFDEFNRL 96 (231)
T ss_dssp TTTEEEEESSTTSSHHHHHHHHHHCT------T--EEEEETTSSS-H------HHHHHHHHHHHHH--T-EEEEETCCCS
T ss_pred cCCCCCCcCCCCCCchhHHHHHHHHh------CCeEEEecccccccH------HHHHHHHHHHhhc--Cchhhhhhhhhh
Confidence 34667789999999999999999999 788999999876542 4556677666554 789999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhcC-------cccCCcEEEEEeeCC----CCCCChHHHhccceEEEecCCCHHHHHHH
Q 047219 401 AVARDSEMHEATRRILSVLLRQIDG-------FEQDKKVVVIAATNR----KQDLDPALISRFDSMITFGLPDHENRQEI 469 (567)
Q Consensus 401 ~~~~q~~l~~~~~~vl~~LL~~ld~-------~~~~~~viVIaaTN~----~~~Ld~aL~sRf~~~I~i~~P~~~eR~eI 469 (567)
....-+......+.+...+...... +..+.++-++.|.|+ ...|++.|+.-| +.+.+..||.....++
T Consensus 97 ~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei 175 (231)
T PF12774_consen 97 SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEI 175 (231)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHH
Confidence 7654333333333333332221111 122345667777775 347999999999 8999999998877776
Q ss_pred HH
Q 047219 470 AA 471 (567)
Q Consensus 470 L~ 471 (567)
+-
T Consensus 176 ~L 177 (231)
T PF12774_consen 176 LL 177 (231)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 253
>PF05729 NACHT: NACHT domain
Probab=98.45 E-value=3e-06 Score=78.68 Aligned_cols=147 Identities=17% Similarity=0.251 Sum_probs=79.5
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCC---cCeEEechhhHHhh------------hhchhHHHHHHHHHHHhcCCC
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQG---VPLMYVPLEVVMSK------------YYGESERLLGKVFSLANELPN 388 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~---~~~~~i~~~~l~s~------------~~G~~~~~l~~~f~~A~~~a~ 388 (567)
-++|+|+||+|||++++.++..+....... .-.+++........ .+..........+.......+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998875432111 11223333222111 111111222222333333445
Q ss_pred CcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccc--eEEEecCCCHHHH
Q 047219 389 GAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFD--SMITFGLPDHENR 466 (567)
Q Consensus 389 ~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~--~~I~i~~P~~~eR 466 (567)
..+|+||.+|.+....+.... ......+...+.. ....++.+|.++.+.. .. .+.+.+. ..+.+...+.++.
T Consensus 82 ~~llilDglDE~~~~~~~~~~---~~~~~~l~~l~~~-~~~~~~~liit~r~~~-~~-~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQER---QRLLDLLSQLLPQ-ALPPGVKLIITSRPRA-FP-DLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred ceEEEEechHhcccchhhhHH---HHHHHHHHHHhhh-ccCCCCeEEEEEcCCh-HH-HHHHhcCCCcEEEECCCCHHHH
Confidence 689999999999764332111 1122222233332 1234556666665322 21 1444332 4688899999999
Q ss_pred HHHHHHHHHh
Q 047219 467 QEIAAQYAKH 476 (567)
Q Consensus 467 ~eIL~~~~~~ 476 (567)
.++++.++++
T Consensus 156 ~~~~~~~f~~ 165 (166)
T PF05729_consen 156 KQYLRKYFSN 165 (166)
T ss_pred HHHHHHHhhc
Confidence 9998877653
No 254
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.42 E-value=2.3e-06 Score=86.39 Aligned_cols=128 Identities=11% Similarity=0.041 Sum_probs=85.7
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec-hhhHHhh------h-h----chhHHHHHHHHHHHhc-
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP-LEVVMSK------Y-Y----GESERLLGKVFSLANE- 385 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~-~~~l~s~------~-~----G~~~~~l~~~f~~A~~- 385 (567)
..+|..+||+||.|+||..+|.++|+.+.+..- ..+|-... |..+... + + .-..+.++++.+....
T Consensus 4 ~~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~-~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~ 82 (261)
T PRK05818 4 KNKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA-NGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRP 82 (261)
T ss_pred CCCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC-CCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccC
Confidence 467899999999999999999999998854310 11121111 1111000 0 0 0112334444433322
Q ss_pred ---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCC
Q 047219 386 ---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLP 461 (567)
Q Consensus 386 ---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P 461 (567)
.+...|++||++|.|.. ...+.||+.++ +++.++++|..|+.++.+.+.++||| ..+.++.+
T Consensus 83 s~e~~~~KV~II~~ae~m~~-----------~AaNaLLK~LE--EPp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 83 SVESNGKKIYIIYGIEKLNK-----------QSANSLLKLIE--EPPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred chhcCCCEEEEeccHhhhCH-----------HHHHHHHHhhc--CCCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 22357999999999963 35588899888 47889999999999999999999999 66777655
No 255
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.37 E-value=3.2e-08 Score=104.15 Aligned_cols=147 Identities=26% Similarity=0.379 Sum_probs=73.8
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC--------CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcE
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPW--------QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAI 391 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~--------~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~I 391 (567)
+..-++||.|.||||||.|.+++++..++..+ .+.. ..+.-+....+|.-+... + -.+.+||
T Consensus 55 r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLt-a~~~~d~~~~~~~leaGa-----l----vlad~Gi 124 (331)
T PF00493_consen 55 RGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLT-ASVSRDPVTGEWVLEAGA-----L----VLADGGI 124 (331)
T ss_dssp --S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCC-EEECCCGGTSSECEEE-H-----H----HHCTTSE
T ss_pred ccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCcc-ceeccccccceeEEeCCc-----h----hcccCce
Confidence 45579999999999999999999877754211 1111 122222222223222221 1 2234799
Q ss_pred EEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC-------------CCChHHHhccceEEEe
Q 047219 392 IFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ-------------DLDPALISRFDSMITF 458 (567)
Q Consensus 392 LfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~-------------~Ld~aL~sRf~~~I~i 458 (567)
++|||+|.|.......++++++...-.+-+..-....+.++.|+|++|+.. .+++.|++|||..+.+
T Consensus 125 ccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l 204 (331)
T PF00493_consen 125 CCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLL 204 (331)
T ss_dssp EEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC
T ss_pred eeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEe
Confidence 999999999765444443333220000000000012356889999999844 4788999999988776
Q ss_pred -cCCCHHHHHHHHHHHHHh
Q 047219 459 -GLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 459 -~~P~~~eR~eIL~~~~~~ 476 (567)
+.|+.+.-..+.+..++.
T Consensus 205 ~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 205 RDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp --TTT-HHHHHHHHHHHTT
T ss_pred ccccccccccccceEEEec
Confidence 666766555666655543
No 256
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.36 E-value=3.8e-07 Score=97.52 Aligned_cols=179 Identities=20% Similarity=0.251 Sum_probs=111.3
Q ss_pred cccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC---CcCeE
Q 047219 281 NIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ---GVPLM 357 (567)
Q Consensus 281 dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~---~~~~~ 357 (567)
+|.|++++|+.|.-++.-.... ..+ .-+..+..-+|+|.|.||+-||-|.++|.+...+..+. +..=+
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~-----~~~----dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGV 413 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDK-----SPG----DGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGV 413 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCC-----CCC----CCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCcc
Confidence 5889999998886655421110 011 11235566789999999999999999999988664221 11111
Q ss_pred EechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEe
Q 047219 358 YVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAA 437 (567)
Q Consensus 358 ~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaa 437 (567)
-+.+.-.....-|+.- +--.|.-.+.++|.+|||+|+|........+++++...-.+-+..-....+.++-|+|+
T Consensus 414 GLTAAVmkDpvTgEM~-----LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaA 488 (721)
T KOG0482|consen 414 GLTAAVMKDPVTGEMV-----LEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAA 488 (721)
T ss_pred ccchhhhcCCCCCeeE-----eccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhh
Confidence 1112211111222210 00112244568999999999998877777788776544444444333345678889999
Q ss_pred eCCCC-------------CCChHHHhccceEEEe-cCCCHHHHHHHHHHH
Q 047219 438 TNRKQ-------------DLDPALISRFDSMITF-GLPDHENRQEIAAQY 473 (567)
Q Consensus 438 TN~~~-------------~Ld~aL~sRf~~~I~i-~~P~~~eR~eIL~~~ 473 (567)
.|+.. .|+.+|++|||..+-+ +.|+.+.-..+.++.
T Consensus 489 ANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~Hi 538 (721)
T KOG0482|consen 489 ANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHI 538 (721)
T ss_pred cCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHh
Confidence 99722 5899999999875554 678777666655543
No 257
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.31 E-value=2.6e-05 Score=79.33 Aligned_cols=136 Identities=21% Similarity=0.288 Sum_probs=81.8
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCCCcC
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQGVP 355 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~~~~ 355 (567)
..|.|+.-+++.+...+...+.++. ...|..+=|+|+|||||..+++.||+.+.+. +++..-
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~--------------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~f 147 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPN--------------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHF 147 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCC--------------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHh
Confidence 3488999999999999988777653 4556666789999999999999999998543 222111
Q ss_pred eEEe--chhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHh---hcCcccCC
Q 047219 356 LMYV--PLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQ---IDGFEQDK 430 (567)
Q Consensus 356 ~~~i--~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~---ld~~~~~~ 430 (567)
+... +...-...|-.+-... +...+.... .++.++||+|+|.+.. . +++..+|.. .++ ....
T Consensus 148 vat~hFP~~~~ie~Yk~eL~~~---v~~~v~~C~-rslFIFDE~DKmp~gL----l----d~lkpfLdyyp~v~g-v~fr 214 (344)
T KOG2170|consen 148 VATLHFPHASKIEDYKEELKNR---VRGTVQACQ-RSLFIFDEVDKLPPGL----L----DVLKPFLDYYPQVSG-VDFR 214 (344)
T ss_pred hhhccCCChHHHHHHHHHHHHH---HHHHHHhcC-CceEEechhhhcCHhH----H----HHHhhhhcccccccc-cccc
Confidence 1111 1122222232222222 333333444 5899999999997441 1 122233321 111 1235
Q ss_pred cEEEEEeeCCCC
Q 047219 431 KVVVIAATNRKQ 442 (567)
Q Consensus 431 ~viVIaaTN~~~ 442 (567)
+.++|.-+|.-+
T Consensus 215 kaIFIfLSN~gg 226 (344)
T KOG2170|consen 215 KAIFIFLSNAGG 226 (344)
T ss_pred ceEEEEEcCCcc
Confidence 678888888633
No 258
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.28 E-value=5.4e-07 Score=98.35 Aligned_cols=160 Identities=22% Similarity=0.266 Sum_probs=92.4
Q ss_pred cccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC---CCcCeE
Q 047219 281 NIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW---QGVPLM 357 (567)
Q Consensus 281 dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~---~~~~~~ 357 (567)
.|.|+..+|..+--.+-.- ..++....-..+...+|||+|.|||||+-+.|++++...+..| .|..-+
T Consensus 450 sIyGh~~VK~AvAlaLfGG---------v~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASav 520 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGG---------VPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAV 520 (854)
T ss_pred hhhchHHHHHHHHHHHhcC---------CccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCcccc
Confidence 4778888887765433211 1111111111344568999999999999999999999865422 121111
Q ss_pred Eechh----hHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEE
Q 047219 358 YVPLE----VVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVV 433 (567)
Q Consensus 358 ~i~~~----~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~vi 433 (567)
-+.+. -+..+|.-+. .|.-.+.+||.+|||+|+|........+++++..--.+-+..--......+.
T Consensus 521 GLTa~v~KdPvtrEWTLEa---------GALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArct 591 (854)
T KOG0477|consen 521 GLTAYVRKDPVTREWTLEA---------GALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCT 591 (854)
T ss_pred ceeEEEeeCCccceeeecc---------CeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhh
Confidence 11111 1111221111 1224456799999999999876666677766442222222111112246789
Q ss_pred EEEeeCCCC-------------CCChHHHhccceEEEe
Q 047219 434 VIAATNRKQ-------------DLDPALISRFDSMITF 458 (567)
Q Consensus 434 VIaaTN~~~-------------~Ld~aL~sRf~~~I~i 458 (567)
+|+|+|+.+ .+.+.+++|||....+
T Consensus 592 vIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVv 629 (854)
T KOG0477|consen 592 VIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVV 629 (854)
T ss_pred hheecCCCCCccCCccchhhccccccchhhhcceeeee
Confidence 999999822 4678899999875555
No 259
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.24 E-value=2.2e-05 Score=83.52 Aligned_cols=127 Identities=21% Similarity=0.278 Sum_probs=71.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchh------HHHHHHHHHHHhcCCCCcEE
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGES------ERLLGKVFSLANELPNGAII 392 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~------~~~l~~~f~~A~~~a~~~IL 392 (567)
..+|+|++|||++|+|||+|+-...+.++......++| ..++....... ..-+..+.+..... ..+|
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HF-----h~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~--~~lL 131 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHF-----HEFMLDVHSRLHQLRGQDDPLPQVADELAKE--SRLL 131 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccc-----cHHHHHHHHHHHHHhCCCccHHHHHHHHHhc--CCEE
Confidence 56899999999999999999999999886432222233 23333322221 11122232222222 2499
Q ss_pred EEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC-CCC-----CC--------hHHHhccceEEEe
Q 047219 393 FLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR-KQD-----LD--------PALISRFDSMITF 458 (567)
Q Consensus 393 fIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~-~~~-----Ld--------~aL~sRf~~~I~i 458 (567)
+|||++--... + ..++..|+..+- ..++++|+|+|+ |++ +. ..|.++| .++++
T Consensus 132 cfDEF~V~Dia------D--Amil~rLf~~l~----~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~-~vv~l 198 (362)
T PF03969_consen 132 CFDEFQVTDIA------D--AMILKRLFEALF----KRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRC-DVVEL 198 (362)
T ss_pred EEeeeeccchh------H--HHHHHHHHHHHH----HCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhce-EEEEe
Confidence 99999753211 1 113333433332 357899999997 222 22 2233466 67777
Q ss_pred cCC-CHHH
Q 047219 459 GLP-DHEN 465 (567)
Q Consensus 459 ~~P-~~~e 465 (567)
+-+ |.+.
T Consensus 199 d~~~DyR~ 206 (362)
T PF03969_consen 199 DGGVDYRR 206 (362)
T ss_pred cCCCchhh
Confidence 666 4443
No 260
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.20 E-value=6.6e-06 Score=73.78 Aligned_cols=79 Identities=23% Similarity=0.380 Sum_probs=44.7
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCC--CCCcCeEEechhhHHh--hhh------------c--hhHHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMP--WQGVPLMYVPLEVVMS--KYY------------G--ESERLLGKVFSLA 383 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~--~~~~~~~~i~~~~l~s--~~~------------G--~~~~~l~~~f~~A 383 (567)
...++++||||+|||++++.+++...... ....+++.+++..... .++ . ........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46799999999999999999999873210 0034466666654331 111 1 1222233333333
Q ss_pred hcCCCCcEEEEcCcchhh
Q 047219 384 NELPNGAIIFLDEVDSFA 401 (567)
Q Consensus 384 ~~~a~~~ILfIDEID~L~ 401 (567)
.... ..+|+|||+|.+.
T Consensus 84 ~~~~-~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRR-VVLLVIDEADHLF 100 (131)
T ss_dssp HHCT-EEEEEEETTHHHH
T ss_pred HhcC-CeEEEEeChHhcC
Confidence 3333 2699999999985
No 261
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.19 E-value=1.2e-05 Score=74.11 Aligned_cols=35 Identities=37% Similarity=0.586 Sum_probs=27.0
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE 362 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~ 362 (567)
++|+|+||+|||+++..++...... +.++++++.+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~---~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK---GGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc---CCEEEEEECC
Confidence 6899999999999999999987432 3445555544
No 262
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.14 E-value=2e-05 Score=84.81 Aligned_cols=173 Identities=21% Similarity=0.282 Sum_probs=100.5
Q ss_pred cccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC---CcCeE
Q 047219 281 NIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ---GVPLM 357 (567)
Q Consensus 281 dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~---~~~~~ 357 (567)
.|.|.++.|+.+.-++---- . +.+. ..+-.+..-+|||.|.|||-|+-|.+.+-+-++-..+. +..-.
T Consensus 332 SIfG~~DiKkAiaClLFgGs-r----K~Lp----Dg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAA 402 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGS-R----KRLP----DGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAA 402 (729)
T ss_pred hhcCchhHHHHHHHHhhcCc-c----ccCC----CcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccc
Confidence 47788888887765442110 0 0010 01113445689999999999999999998876321000 00000
Q ss_pred EechhhHH---h-hhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEE
Q 047219 358 YVPLEVVM---S-KYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVV 433 (567)
Q Consensus 358 ~i~~~~l~---s-~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~vi 433 (567)
-+.++-+. + .++-+. .|.-.+.++|++|||+|+|-....-..+++++...-.+-+..-....+.++-
T Consensus 403 GLTASV~RD~~tReFylEG---------GAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtS 473 (729)
T KOG0481|consen 403 GLTASVIRDPSTREFYLEG---------GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTS 473 (729)
T ss_pred cceeeEEecCCcceEEEec---------ceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhh
Confidence 00000000 0 111111 1224566899999999999877666677776654444444433334567888
Q ss_pred EEEeeCCCC-------------CCChHHHhccceEEEecCCCHHHHHHHHH
Q 047219 434 VIAATNRKQ-------------DLDPALISRFDSMITFGLPDHENRQEIAA 471 (567)
Q Consensus 434 VIaaTN~~~-------------~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~ 471 (567)
|+|+.|+.. +|-+.+++|||.++-+.--..++|-..|.
T Consensus 474 VLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lA 524 (729)
T KOG0481|consen 474 VLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLA 524 (729)
T ss_pred hhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHH
Confidence 999999722 36689999999888776544444443333
No 263
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.10 E-value=5.4e-05 Score=77.31 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=87.6
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC-CCCCCCcCeEEechh----hHHhhh---hc----------hhHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG-AMPWQGVPLMYVPLE----VVMSKY---YG----------ESERLLGKVFS 381 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~-~~~~~~~~~~~i~~~----~l~s~~---~G----------~~~~~l~~~f~ 381 (567)
.....|.|+|++|+|||+||+.+++... ...|..+-++.+... .+.... .+ ..+.....+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 5667899999999999999999998732 222322222222211 111111 11 12223333333
Q ss_pred HHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCC
Q 047219 382 LANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLP 461 (567)
Q Consensus 382 ~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P 461 (567)
.... . +++|+||+++... .+..+...+. ....+..||.||.... +-..+... ...++++..
T Consensus 97 ~L~~-~-~~LlVlDdv~~~~-------------~~~~l~~~~~--~~~~~~kilvTTR~~~-v~~~~~~~-~~~~~l~~L 157 (287)
T PF00931_consen 97 LLKD-K-RCLLVLDDVWDEE-------------DLEELREPLP--SFSSGSKILVTTRDRS-VAGSLGGT-DKVIELEPL 157 (287)
T ss_dssp HHCC-T-SEEEEEEEE-SHH-------------HH-------H--CHHSS-EEEEEESCGG-GGTTHHSC-EEEEECSS-
T ss_pred hhcc-c-cceeeeeeecccc-------------cccccccccc--cccccccccccccccc-cccccccc-ccccccccc
Confidence 3333 2 6999999998753 1111221111 1223567777776432 21222212 368899999
Q ss_pred CHHHHHHHHHHHHHhhC-------HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 462 DHENRQEIAAQYAKHLT-------KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 462 ~~~eR~eIL~~~~~~~~-------~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
+.++-.+++...+.... .+...++++.+.| .|-.|+.+....
T Consensus 158 ~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a~~l 206 (287)
T PF00931_consen 158 SEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIASYL 206 (287)
T ss_dssp -HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 99999999998865433 3356778888765 466666655443
No 264
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.09 E-value=3.8e-05 Score=71.66 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=25.7
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAM 349 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~ 349 (567)
.....++++|+||+||||++.-+++.+...
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 345679999999999999999999988543
No 265
>PHA00729 NTP-binding motif containing protein
Probab=98.06 E-value=0.00019 Score=71.29 Aligned_cols=112 Identities=14% Similarity=0.072 Sum_probs=64.2
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCC--C--------CCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcE
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAM--P--------WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAI 391 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~--~--------~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~I 391 (567)
..+++|+|+||||||++|.+|++.+... . ..+..+..++.+++...+ ...+.. .....+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L--------~~a~~~---~~~~dl 85 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKI--------QDAIDN---DYRIPL 85 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHH--------HHHHhc---CCCCCE
Confidence 3589999999999999999999986310 0 012345556555554432 112211 111358
Q ss_pred EEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHH
Q 047219 392 IFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAA 471 (567)
Q Consensus 392 LfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~ 471 (567)
|+|||+..-..+-. ...+ . + .....+.+++++|+ ..+.|..++.++..+.++
T Consensus 86 LIIDd~G~~~~~~~-----wh~~----------------~--~----~~yf~L~~aLrSR~-~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 86 IIFDDAGIWLSKYV-----WYED----------------Y--M----KTFYKIYALIRTRV-SAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred EEEeCCchhhcccc-----hhhh----------------c--c----chHHHHHHHHHhhC-cEEEEecCCHHHHHHHHH
Confidence 99999754321100 0000 0 0 01223567788888 567777777777777666
Q ss_pred H
Q 047219 472 Q 472 (567)
Q Consensus 472 ~ 472 (567)
.
T Consensus 138 ~ 138 (226)
T PHA00729 138 E 138 (226)
T ss_pred h
Confidence 5
No 266
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3.3e-05 Score=89.44 Aligned_cols=168 Identities=21% Similarity=0.298 Sum_probs=117.1
Q ss_pred cccccCc-HHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCCC
Q 047219 279 WENIAGY-DQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQG 353 (567)
Q Consensus 279 ~~dIiG~-~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~~ 353 (567)
.+-++|. ++.++.+.+.+. ....++-+|.|+||+|||.++.-+++..... +...
T Consensus 185 ldPvigr~deeirRvi~iL~---------------------Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~ 243 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS---------------------RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKD 243 (898)
T ss_pred CCCccCCchHHHHHHHHHHh---------------------ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccc
Confidence 4556676 777877777664 2333788899999999999999999988543 2235
Q ss_pred cCeEEechhhHH--hhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc
Q 047219 354 VPLMYVPLEVVM--SKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 354 ~~~~~i~~~~l~--s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
..++.++...+. .++.|+.+.++..+.+++.....+.||||||++.+.+...... .-...+ +|..+- ..+.
T Consensus 244 ~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~---~~d~~n-lLkp~L---~rg~ 316 (898)
T KOG1051|consen 244 KKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG---AIDAAN-LLKPLL---ARGG 316 (898)
T ss_pred cceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch---HHHHHH-hhHHHH---hcCC
Confidence 567777766443 3567889999999999888666678999999999976654411 112222 222221 2345
Q ss_pred EEEEEeeCCC-----CCCChHHHhccceEEEecCCCHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRK-----QDLDPALISRFDSMITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 432 viVIaaTN~~-----~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~ 475 (567)
+.+|+||... -.-+|+|-+|| ..+.+..|+...-..|+..+..
T Consensus 317 l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 317 LWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred eEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhhhhhhhhh
Confidence 8999988632 24589999999 6778899998776666665544
No 267
>PF14516 AAA_35: AAA-like domain
Probab=98.05 E-value=0.00025 Score=74.83 Aligned_cols=178 Identities=17% Similarity=0.200 Sum_probs=107.6
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhch----------------------------
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGE---------------------------- 371 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~---------------------------- 371 (567)
.++..+.++||..+|||++...+.+.+... +..++++++..+.+..+..
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~---~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~ 105 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQ---GYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDE 105 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHC---CCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 457789999999999999999998888554 5567777665432211000
Q ss_pred ---hHHHHHHHHHH--HhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc---cCCcEEEEEeeCCCCC
Q 047219 372 ---SERLLGKVFSL--ANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE---QDKKVVVIAATNRKQD 443 (567)
Q Consensus 372 ---~~~~l~~~f~~--A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~---~~~~viVIaaTN~~~~ 443 (567)
........|+. ......+-||+|||||.+....+ ...+.+..|..+.+... ....+++|.+......
T Consensus 106 ~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-----~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 106 EIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-----IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY 180 (331)
T ss_pred hcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-----hHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence 11123333443 22333468999999999975321 22233333333333211 1234445444432222
Q ss_pred CChHHH-h--ccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 444 LDPALI-S--RFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 444 Ld~aL~-s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
+..+.. + .+...+.++..+.++-..+++.+-..+....++.+-..+.| -|-=++.+|...+.
T Consensus 181 ~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~~~~~~~l~~~tgG-hP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 181 IILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFSQEQLEQLMDWTGG-HPYLVQKACYLLVE 245 (331)
T ss_pred cccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCCHHHHHHHHHHHCC-CHHHHHHHHHHHHH
Confidence 222221 1 22357778888999998888887666777789999988877 46777777777664
No 268
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.03 E-value=1.8e-05 Score=93.81 Aligned_cols=139 Identities=24% Similarity=0.406 Sum_probs=95.9
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh--hhhch-----hHHHH---HHHHHHHhcCCCC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS--KYYGE-----SERLL---GKVFSLANELPNG 389 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s--~~~G~-----~~~~l---~~~f~~A~~~a~~ 389 (567)
...+++||.|.||+|||++..++|+.. |..++.|+.++... .+||. ....+ ..-|-.|.+ .+
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~t------G~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr--~G 1612 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKT------GKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMR--DG 1612 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHh------cCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhh--cC
Confidence 457899999999999999999999999 66788888765332 23432 11111 011222222 47
Q ss_pred cEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcC------------cccCCcEEEEEeeCCCC------CCChHHHhc
Q 047219 390 AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG------------FEQDKKVVVIAATNRKQ------DLDPALISR 451 (567)
Q Consensus 390 ~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~------------~~~~~~viVIaaTN~~~------~Ld~aL~sR 451 (567)
+.++|||+..-. +.++..|-..+|. +....+++|+||-|+.+ .|+..+..|
T Consensus 1613 ~WVlLDEiNLaS-----------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nR 1681 (4600)
T COG5271 1613 GWVLLDEINLAS-----------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNR 1681 (4600)
T ss_pred CEEEeehhhhhH-----------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhh
Confidence 899999997643 2333333333332 23467899999999844 599999999
Q ss_pred cceEEEecCCCHHHHHHHHHHHHHhhC
Q 047219 452 FDSMITFGLPDHENRQEIAAQYAKHLT 478 (567)
Q Consensus 452 f~~~I~i~~P~~~eR~eIL~~~~~~~~ 478 (567)
| .++.++..+.++...|.........
T Consensus 1682 F-svV~~d~lt~dDi~~Ia~~~yp~v~ 1707 (4600)
T COG5271 1682 F-SVVKMDGLTTDDITHIANKMYPQVN 1707 (4600)
T ss_pred h-heEEecccccchHHHHHHhhCCccC
Confidence 9 8899999998888888776655433
No 269
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.03 E-value=0.00013 Score=79.57 Aligned_cols=208 Identities=16% Similarity=0.221 Sum_probs=105.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC--
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-- 350 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-- 350 (567)
...+-+.+++.-+..-+.++++++... ..|. ..-..+-+||+||+||||||.++.++++++-..
T Consensus 75 Ky~P~t~eeLAVHkkKI~eVk~WL~~~----~~~~----------~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 75 KYKPRTLEELAVHKKKISEVKQWLKQV----AEFT----------PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred hcCcccHHHHhhhHHhHHHHHHHHHHH----HHhc----------cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 334467788888888888887776521 1111 123446788999999999999999999994220
Q ss_pred CC-CcCeEEech----hhHHhhhhchhHHHHHHHHHHHh-----------cCCCCcEEEEcCcchhhhhhhhhhHHHHHH
Q 047219 351 WQ-GVPLMYVPL----EVVMSKYYGESERLLGKVFSLAN-----------ELPNGAIIFLDEVDSFAVARDSEMHEATRR 414 (567)
Q Consensus 351 ~~-~~~~~~i~~----~~l~s~~~G~~~~~l~~~f~~A~-----------~~a~~~ILfIDEID~L~~~~q~~l~~~~~~ 414 (567)
|. .+++...+- +......+...-..+..+...+. ....+.+|++||+=...... ..+..++
T Consensus 141 w~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d---~~~~f~e 217 (634)
T KOG1970|consen 141 WSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD---DSETFRE 217 (634)
T ss_pred ecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh---hHHHHHH
Confidence 00 111111100 01111111111111111222221 11224689999997665331 1223334
Q ss_pred HHHHHHHhhcCcccCCcEEEEEe-eCCCCCCC------hHHHh--ccceEEEecCCCHHHHHHHHHHHHHhh----C---
Q 047219 415 ILSVLLRQIDGFEQDKKVVVIAA-TNRKQDLD------PALIS--RFDSMITFGLPDHENRQEIAAQYAKHL----T--- 478 (567)
Q Consensus 415 vl~~LL~~ld~~~~~~~viVIaa-TN~~~~Ld------~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~----~--- 478 (567)
++..+... ....+++|.| ++..+..+ .++.- |. ..|.|.+-..--.+..|...+... .
T Consensus 218 vL~~y~s~-----g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k 291 (634)
T KOG1970|consen 218 VLRLYVSI-----GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIK 291 (634)
T ss_pred HHHHHHhc-----CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCc
Confidence 33322221 1122333332 22233322 23322 55 578888777777777777666542 1
Q ss_pred ---HHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 047219 479 ---KAELAELATATEEMSGRDIRDVCQQAERS 507 (567)
Q Consensus 479 ---~~~l~~la~~t~g~s~~dL~~L~~~a~~~ 507 (567)
...++.++.. +++||+.+++.....
T Consensus 292 ~~~~~~v~~i~~~----s~GDIRsAInsLQls 319 (634)
T KOG1970|consen 292 VPDTAEVELICQG----SGGDIRSAINSLQLS 319 (634)
T ss_pred CchhHHHHHHHHh----cCccHHHHHhHhhhh
Confidence 2244445444 455898888776644
No 270
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.99 E-value=0.00019 Score=77.13 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=44.0
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh-CCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA-GAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l-~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
....++++.||+|||||+++.+++... -.. + ..++...+...... +.++ ......+|+|||+.
T Consensus 207 e~~~Nli~lGp~GTGKThla~~l~~~~a~~s---G---~f~T~a~Lf~~L~~---~~lg-------~v~~~DlLI~DEvg 270 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYNNLSPYVILIS---G---GTITVAKLFYNIST---RQIG-------LVGRWDVVAFDEVA 270 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHHHHhHHHHHHc---C---CcCcHHHHHHHHHH---HHHh-------hhccCCEEEEEcCC
Confidence 456899999999999999999998872 111 1 22333444332211 1111 22235799999999
Q ss_pred hhhhhhh
Q 047219 399 SFAVARD 405 (567)
Q Consensus 399 ~L~~~~q 405 (567)
.+....+
T Consensus 271 ylp~~~~ 277 (449)
T TIGR02688 271 TLKFAKP 277 (449)
T ss_pred CCcCCch
Confidence 9775533
No 271
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.96 E-value=3.8e-05 Score=75.13 Aligned_cols=42 Identities=31% Similarity=0.513 Sum_probs=32.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEV 363 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~ 363 (567)
.....-++|+||||+|||+++..++...... +..+++++.+.
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e~ 50 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTEG 50 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCC
Confidence 4556779999999999999999988766332 45677777754
No 272
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00067 Score=67.92 Aligned_cols=176 Identities=14% Similarity=0.148 Sum_probs=103.4
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH-----Hhhhhch------------hHHHHHHHHHHH
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV-----MSKYYGE------------SERLLGKVFSLA 383 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l-----~s~~~G~------------~~~~l~~~f~~A 383 (567)
...-+.++|+-|+|||.+.|++...++.. .+..++++...+ ...++.+ .+..-+.+....
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~~d---~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLNED---QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcCCC---ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 33467899999999999999877777543 222235554322 2222211 122223333444
Q ss_pred hcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCC----hHHHhccceEEEec
Q 047219 384 NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLD----PALISRFDSMITFG 459 (567)
Q Consensus 384 ~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld----~aL~sRf~~~I~i~ 459 (567)
+....+.++++||.+.+....-. .+.-|...-+.....-.+++|+-..-...+. ..+.+|++..|+++
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~le--------~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~ 198 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSALE--------ALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELP 198 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHHH--------HHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecC
Confidence 44444589999999998754211 1122222222222223355555432211111 23334886668888
Q ss_pred CCCHHHHHHHHHHHHHh-------hCHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 047219 460 LPDHENRQEIAAQYAKH-------LTKAELAELATATEEMSGRDIRDVCQQAERSW 508 (567)
Q Consensus 460 ~P~~~eR~eIL~~~~~~-------~~~~~l~~la~~t~g~s~~dL~~L~~~a~~~a 508 (567)
+.+.++-...++.+++. +..+.+..+...+.| -|..+.++|..|...+
T Consensus 199 P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a 253 (269)
T COG3267 199 PLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAA 253 (269)
T ss_pred CcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHH
Confidence 88988888888888875 456677888888887 5778888887776543
No 273
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.94 E-value=3.6e-05 Score=69.38 Aligned_cols=55 Identities=27% Similarity=0.391 Sum_probs=46.1
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
..|.|+.-+.+.+.+++...+..+. .+.|.-+-|+|+||||||.+++.||+.+..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~--------------p~KpLVlSfHG~tGtGKn~v~~liA~~ly~ 79 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPN--------------PRKPLVLSFHGWTGTGKNFVSRLIAEHLYK 79 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCC--------------CCCCEEEEeecCCCCcHHHHHHHHHHHHHh
Confidence 4689999999999999998876642 455666779999999999999999999744
No 274
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.94 E-value=0.00029 Score=86.05 Aligned_cols=54 Identities=26% Similarity=0.404 Sum_probs=43.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
+...+++++|.+..++++...+.. +....+-+-|+|++|+||||+|+++++.+.
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l-------------------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHL-------------------ESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHcc-------------------ccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 345678999999999998876632 134567788999999999999999988763
No 275
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.93 E-value=2.1e-05 Score=85.63 Aligned_cols=159 Identities=22% Similarity=0.245 Sum_probs=95.2
Q ss_pred cccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--------CCC
Q 047219 281 NIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--------PWQ 352 (567)
Q Consensus 281 dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--------~~~ 352 (567)
.|-|++.+|+.|.-++.- --|. .+ .+--..+..-++|+.|.|.|-|+-|.|++-+..+.. .-+
T Consensus 302 SI~GH~~vKkAillLLlG---GvEk--~L----~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGV 372 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLG---GVEK--NL----ENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGV 372 (818)
T ss_pred ccccHHHHHHHHHHHHhc---ccee--cc----CCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCc
Confidence 478999999988655431 1111 11 111113456789999999999999999999987531 111
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
++.-. +. ..+--|+ +.+-..|.-.+..||++|||+|+|..-.....+++++...-.+-+..-....+.+|
T Consensus 373 GLTAA-VT----tD~eTGE-----RRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARC 442 (818)
T KOG0479|consen 373 GLTAA-VT----TDQETGE-----RRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARC 442 (818)
T ss_pred cceeE-Ee----eccccch-----hhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccce
Confidence 11111 11 1111111 22323344556679999999999975544455555543222222222222346789
Q ss_pred EEEEeeCCCC-------------CCChHHHhccceEEEe
Q 047219 433 VVIAATNRKQ-------------DLDPALISRFDSMITF 458 (567)
Q Consensus 433 iVIaaTN~~~-------------~Ld~aL~sRf~~~I~i 458 (567)
-|+|+.|+.. .|++.|++|||..+.+
T Consensus 443 SVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~ 481 (818)
T KOG0479|consen 443 SVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVV 481 (818)
T ss_pred eeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEE
Confidence 9999999832 4889999999876555
No 276
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.91 E-value=0.00075 Score=67.40 Aligned_cols=144 Identities=11% Similarity=0.088 Sum_probs=100.3
Q ss_pred CCCCceEEeeCCCC-CcHHHHHHHHHHHhCCC---CCCCcCeEEechhhHH---hhhhchhHHHHHHHHHHHh---cCCC
Q 047219 319 SNRPRAVLFEGPPG-TGKTSCARVIANQAGAM---PWQGVPLMYVPLEVVM---SKYYGESERLLGKVFSLAN---ELPN 388 (567)
Q Consensus 319 ~~~p~~VLL~GppG-TGKT~LAraIA~~l~~~---~~~~~~~~~i~~~~l~---s~~~G~~~~~l~~~f~~A~---~~a~ 388 (567)
....+..||.|..+ +||..++..+++.+... ....-.+..+..+.-. ++.. .-+.++++.+.+. ..++
T Consensus 12 ~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~ 89 (263)
T PRK06581 12 NKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISG 89 (263)
T ss_pred CcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCC
Confidence 45567899999998 99999999988877432 1112234444322100 0111 2234555544443 2334
Q ss_pred CcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHH
Q 047219 389 GAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQE 468 (567)
Q Consensus 389 ~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~e 468 (567)
..|++|+++|.|.. ...+.||+.++ +++.++++|..|..+..+.+.++||| ..+.+..|+...-.+
T Consensus 90 ~KViII~~ae~mt~-----------~AANALLKtLE--EPP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 90 YKVAIIYSAELMNL-----------NAANSCLKILE--DAPKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred cEEEEEechHHhCH-----------HHHHHHHHhhc--CCCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHH
Confidence 67999999999963 35588899888 47788999999999999999999999 899999999987777
Q ss_pred HHHHHHHhhC
Q 047219 469 IAAQYAKHLT 478 (567)
Q Consensus 469 IL~~~~~~~~ 478 (567)
.....+..+.
T Consensus 156 ~~~~~~~p~~ 165 (263)
T PRK06581 156 LYSQFIQPIA 165 (263)
T ss_pred HHHHhccccc
Confidence 7766655443
No 277
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.86 E-value=9.6e-05 Score=88.01 Aligned_cols=136 Identities=24% Similarity=0.297 Sum_probs=93.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH--Hhhhhch----hHH---HHHHHHHHHhcCCCC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV--MSKYYGE----SER---LLGKVFSLANELPNG 389 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l--~s~~~G~----~~~---~l~~~f~~A~~~a~~ 389 (567)
....-++||.||+.+|||++..++|++. +..|+.|+-.+- ...|.|. ... .-..++-+|.+. +
T Consensus 885 s~~~fP~LiQGpTSSGKTSMI~yla~~t------ghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~--G 956 (4600)
T COG5271 885 SLSNFPLLIQGPTSSGKTSMILYLARET------GHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRR--G 956 (4600)
T ss_pred hhcCCcEEEecCCCCCcchHHHHHHHHh------CccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhc--C
Confidence 3455689999999999999999999999 667888886543 2344443 111 011233334443 6
Q ss_pred cEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcC------------cccCCcEEEEEeeCCCC------CCChHHHhc
Q 047219 390 AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG------------FEQDKKVVVIAATNRKQ------DLDPALISR 451 (567)
Q Consensus 390 ~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~------------~~~~~~viVIaaTN~~~------~Ld~aL~sR 451 (567)
-.|+|||+..-+.. ++..|-+.+|. ..+..+++++||-|+|. .|..+++.|
T Consensus 957 yWIVLDELNLApTD-----------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNR 1025 (4600)
T COG5271 957 YWIVLDELNLAPTD-----------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNR 1025 (4600)
T ss_pred cEEEeeccccCcHH-----------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhh
Confidence 79999999765422 22333333332 13457899999999876 488999999
Q ss_pred cceEEEecCCCHHHHHHHHHHHH
Q 047219 452 FDSMITFGLPDHENRQEIAAQYA 474 (567)
Q Consensus 452 f~~~I~i~~P~~~eR~eIL~~~~ 474 (567)
| ..++|.--+.++..+|+...+
T Consensus 1026 F-lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1026 F-LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred h-HhhhcccCcHHHHHHHHhccC
Confidence 9 889998888888888887654
No 278
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.80 E-value=0.00021 Score=68.15 Aligned_cols=34 Identities=44% Similarity=0.595 Sum_probs=25.9
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
+|++||||||||+++..++.+.... +.++.+++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEEC
Confidence 7899999999999999887765332 445666654
No 279
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.78 E-value=3.3e-05 Score=67.77 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.1
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhC
Q 047219 325 VLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~ 347 (567)
|+|+||||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998874
No 280
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.76 E-value=0.00018 Score=74.36 Aligned_cols=168 Identities=20% Similarity=0.273 Sum_probs=97.6
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
-.+.|..+..+.+.+.+..... ....++|++.||.|+|||.+....-...... -.+.-.+.+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~-----------------~gEsnsviiigprgsgkT~li~~~Ls~~q~~-~E~~l~v~L 85 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL-----------------HGESNSVIIIGPRGSGKTILIDTRLSDIQEN-GENFLLVRL 85 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH-----------------hcCCCceEEEccCCCCceEeeHHHHhhHHhc-CCeEEEEEE
Confidence 4578888888888888775422 3456899999999999998766554442111 001123334
Q ss_pred chhhHHhh-------------------hhchhHHHHHHHHHHHhc---CCCC-cEEEEcCcchhhhhhhhhhHHHHHHHH
Q 047219 360 PLEVVMSK-------------------YYGESERLLGKVFSLANE---LPNG-AIIFLDEVDSFAVARDSEMHEATRRIL 416 (567)
Q Consensus 360 ~~~~l~s~-------------------~~G~~~~~l~~~f~~A~~---~a~~-~ILfIDEID~L~~~~q~~l~~~~~~vl 416 (567)
++.....+ .+|.....+..++...+. .... .|.++||||.+++.. .+..+
T Consensus 86 ng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~-------rQtll 158 (408)
T KOG2228|consen 86 NGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS-------RQTLL 158 (408)
T ss_pred CccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch-------hhHHH
Confidence 43322211 133333344444443331 2222 344577999987542 12222
Q ss_pred HHHHHhhcCcccCCcEEEEEeeCCCC---CCChHHHhccceE-EEe-cCCCHHHHHHHHHHHH
Q 047219 417 SVLLRQIDGFEQDKKVVVIAATNRKQ---DLDPALISRFDSM-ITF-GLPDHENRQEIAAQYA 474 (567)
Q Consensus 417 ~~LL~~ld~~~~~~~viVIaaTN~~~---~Ld~aL~sRf~~~-I~i-~~P~~~eR~eIL~~~~ 474 (567)
..++..-. ....++.||+.|.+-+ .|...+.+||... |++ +..++++...+++.++
T Consensus 159 YnlfDisq--s~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 159 YNLFDISQ--SARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHh--hcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 33333222 2356888888887644 5678888999654 555 4447888888888776
No 281
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.74 E-value=0.00017 Score=71.49 Aligned_cols=41 Identities=32% Similarity=0.503 Sum_probs=32.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE 362 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~ 362 (567)
.....-++|+|+||+|||+++..++.+.... +.++++++.+
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~~~---~~~v~yi~~e 60 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAAKN---GKKVIYIDTE 60 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEECC
Confidence 4556678999999999999999999866332 4567777776
No 282
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.72 E-value=0.00089 Score=70.40 Aligned_cols=201 Identities=17% Similarity=0.213 Sum_probs=113.7
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
..+.+.+.+++.+...+-. .+ -..|..+.|+|..|||||.+.|.+-+.+ +.+.+++
T Consensus 6 ~~v~~Re~qi~~L~~Llg~---~~---------------~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~ 61 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN---NS---------------CTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWL 61 (438)
T ss_pred cCccchHHHHHHHHHHhCC---CC---------------cccceeEEEeccCCCchhHHHHHHHhhc------CCcceee
Confidence 3567888888888765521 11 2357788999999999999999999998 3445555
Q ss_pred chhhHH----------hhh-----hchh----HHHH---HHHHHH---HhcCCCCcEEEEcCcchhhhhhhhhhHHHHHH
Q 047219 360 PLEVVM----------SKY-----YGES----ERLL---GKVFSL---ANELPNGAIIFLDEVDSFAVARDSEMHEATRR 414 (567)
Q Consensus 360 ~~~~l~----------s~~-----~G~~----~~~l---~~~f~~---A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~ 414 (567)
++-+.. .+. -|.. ...+ -..|.. +.+......|++|.+|.+... .. -
T Consensus 62 n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~-~a-------~ 133 (438)
T KOG2543|consen 62 NCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM-DA-------I 133 (438)
T ss_pred ehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc-ch-------H
Confidence 543211 111 0110 0111 112222 223333578899999998522 11 1
Q ss_pred HHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHh----cc-ceEEEecCCCHHHHHHHHHHHHH-hhC--------HH
Q 047219 415 ILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALIS----RF-DSMITFGLPDHENRQEIAAQYAK-HLT--------KA 480 (567)
Q Consensus 415 vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~s----Rf-~~~I~i~~P~~~eR~eIL~~~~~-~~~--------~~ 480 (567)
.+..+++.-+-...+ .+.+|...-. .+..+. .+ -.+++|+.|+.++-..|+..--. ... .-
T Consensus 134 ll~~l~~L~el~~~~-~i~iils~~~----~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v 208 (438)
T KOG2543|consen 134 LLQCLFRLYELLNEP-TIVIILSAPS----CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHV 208 (438)
T ss_pred HHHHHHHHHHHhCCC-ceEEEEeccc----cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHH
Confidence 233333333322222 3444433322 122221 11 24788999999999998874322 111 12
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhccccc
Q 047219 481 ELAELATATEEMSGRDIRDVCQQAERSWASKIIRGQITK 519 (567)
Q Consensus 481 ~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r~i~~~i~~ 519 (567)
.+.-+...+. ...+++.+...+|...++++..+.++.
T Consensus 209 ~l~vF~~~cr--d~~eL~~~~~~~wpky~epi~~~~i~~ 245 (438)
T KOG2543|consen 209 LLQVFYMACR--DVNELRSLISLAWPKYCEPITKGKIDP 245 (438)
T ss_pred HHHHHHHHhC--CHHHHHHHHHHHHHhhccccccCCCCh
Confidence 2333444443 678888999999988888877766543
No 283
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.67 E-value=0.00029 Score=71.31 Aligned_cols=88 Identities=23% Similarity=0.238 Sum_probs=51.9
Q ss_pred ccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech------hhHHhhh--------hchh-HH---HHHH
Q 047219 317 FESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL------EVVMSKY--------YGES-ER---LLGK 378 (567)
Q Consensus 317 ~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~------~~l~s~~--------~G~~-~~---~l~~ 378 (567)
+....+.-++|.||+|||||++++.+++......|...-++++.. .++.... .++. .. ....
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~ 90 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEM 90 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHH
Confidence 345677889999999999999999999988654221222333222 2222222 1211 11 1122
Q ss_pred HHHHHh---cCCCCcEEEEcCcchhhhhh
Q 047219 379 VFSLAN---ELPNGAIIFLDEVDSFAVAR 404 (567)
Q Consensus 379 ~f~~A~---~~a~~~ILfIDEID~L~~~~ 404 (567)
+.+.|+ ......+||+||+++++...
T Consensus 91 ~~~~a~~~~~~G~~vll~iDei~r~a~a~ 119 (249)
T cd01128 91 VLEKAKRLVEHGKDVVILLDSITRLARAY 119 (249)
T ss_pred HHHHHHHHHHCCCCEEEEEECHHHhhhhh
Confidence 233333 23446899999999997654
No 284
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.66 E-value=0.00025 Score=74.15 Aligned_cols=117 Identities=22% Similarity=0.267 Sum_probs=66.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh----hc------------hhHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY----YG------------ESERLLGKVFSL 382 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~----~G------------~~~~~l~~~f~~ 382 (567)
.+....++|+||||||||+||..++.+.... +..+++++.+...... +| ..+..+..+...
T Consensus 52 lp~G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 52 LPRGRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 4566779999999999999988877665433 5567777765433211 11 122222222222
Q ss_pred HhcCCCCcEEEEcCcchhhhhh--hhh----hHHHHHHHHHHHHHhhcCcccCCcEEEEEeeC
Q 047219 383 ANELPNGAIIFLDEVDSFAVAR--DSE----MHEATRRILSVLLRQIDGFEQDKKVVVIAATN 439 (567)
Q Consensus 383 A~~~a~~~ILfIDEID~L~~~~--q~~----l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN 439 (567)
.+.. ...+|+||-+..+.+.. +.. ......+.+..++..+...-...++.+|.+..
T Consensus 129 i~~~-~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 129 VRSG-AVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred hhcc-CCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 2233 35899999999887531 111 01112233344444444444456677776653
No 285
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.59 E-value=0.00018 Score=71.42 Aligned_cols=25 Identities=40% Similarity=0.631 Sum_probs=21.8
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~ 344 (567)
..|..+||||+||+|||++|+.++.
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCC
Confidence 3467799999999999999999874
No 286
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.58 E-value=0.0002 Score=69.84 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=26.9
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
..+..++.|+||||||++++.+...+... +..++.+..
T Consensus 17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~ap 54 (196)
T PF13604_consen 17 GDRVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAP 54 (196)
T ss_dssp TCSEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEES
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECC
Confidence 34568889999999999999998877543 334444443
No 287
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.58 E-value=0.00055 Score=71.45 Aligned_cols=102 Identities=20% Similarity=0.252 Sum_probs=59.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhh-------hhchhHHHHHHHHHHHhcCCCCcE
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSK-------YYGESERLLGKVFSLANELPNGAI 391 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~-------~~G~~~~~l~~~f~~A~~~a~~~I 391 (567)
..+++++.|||+-|+|||.|.-.....++.......+| ..+|.. +.|++ .-+..+-.+.... ..+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HF-----h~FM~~vH~~l~~l~g~~-dpl~~iA~~~~~~--~~v 133 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHF-----HRFMARVHQRLHTLQGQT-DPLPPIADELAAE--TRV 133 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccH-----HHHHHHHHHHHHHHcCCC-CccHHHHHHHHhc--CCE
Confidence 56889999999999999999999999885432112222 233332 23433 2222222222222 369
Q ss_pred EEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC
Q 047219 392 IFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR 440 (567)
Q Consensus 392 LfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~ 440 (567)
|+|||++-=. ..++ -++..|+..+- ..+|++++|+|.
T Consensus 134 LCfDEF~VtD------I~DA--MiL~rL~~~Lf----~~GV~lvaTSN~ 170 (367)
T COG1485 134 LCFDEFEVTD------IADA--MILGRLLEALF----ARGVVLVATSNT 170 (367)
T ss_pred EEeeeeeecC------hHHH--HHHHHHHHHHH----HCCcEEEEeCCC
Confidence 9999996421 1111 13333333322 247899999997
No 288
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.58 E-value=0.00033 Score=74.70 Aligned_cols=86 Identities=27% Similarity=0.278 Sum_probs=50.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeE-Eechh------hHHhhhhc---------hhHHHHH---HH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLM-YVPLE------VVMSKYYG---------ESERLLG---KV 379 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~-~i~~~------~l~s~~~G---------~~~~~l~---~~ 379 (567)
...+.-.+|+||||||||+|++.|++......+ ++.++ .+..+ ++.....| ......+ .+
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~Ian~I~~nhF-Dv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ 244 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQNIANSITTNHP-EVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMV 244 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHHHHHHHHhhcC-CeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHH
Confidence 455667899999999999999999998854322 23322 22221 11111111 1222222 23
Q ss_pred HHHHh---cCCCCcEEEEcCcchhhhhhh
Q 047219 380 FSLAN---ELPNGAIIFLDEVDSFAVARD 405 (567)
Q Consensus 380 f~~A~---~~a~~~ILfIDEID~L~~~~q 405 (567)
++.|+ ......+||||||++++....
T Consensus 245 ie~Ae~~~e~G~dVlL~iDsItR~arAqr 273 (416)
T PRK09376 245 IEKAKRLVEHGKDVVILLDSITRLARAYN 273 (416)
T ss_pred HHHHHHHHHcCCCEEEEEEChHHHHHHHH
Confidence 33333 334568999999999986543
No 289
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.54 E-value=0.00057 Score=70.20 Aligned_cols=122 Identities=17% Similarity=0.215 Sum_probs=87.9
Q ss_pred cCCcEEEEEee--CCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----------hCHHHHHHHHHhccCCCHH
Q 047219 428 QDKKVVVIAAT--NRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----------LTKAELAELATATEEMSGR 495 (567)
Q Consensus 428 ~~~~viVIaaT--N~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----------~~~~~l~~la~~t~g~s~~ 495 (567)
.++.+++|+|| |+...++++|+||| +++.+..++.++...+++..+.. +.++.++.++....|
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~G---- 79 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEG---- 79 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCC----
Confidence 36789999988 78889999999999 99999999999999999987752 345566666665554
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHhhH-----HhhhhccCC
Q 047219 496 DIRDVCQQAERSWASKIIRGQITKDGEQACLPPLQEYIESATNRRRSLLDAAEQSHQNI-----NNHRTKKQP 563 (567)
Q Consensus 496 dL~~L~~~a~~~a~~r~i~~~i~~~~~~~~~~~l~e~le~~e~~~~~li~~al~~~~~~-----~s~~~~~~~ 563 (567)
|.|.+++....... ... ... . .....+.++.....+...+++..+.||++ ||+|+.++|
T Consensus 80 DaR~aLN~LE~a~~--~~~---~~~--~--~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpD 143 (300)
T PRK14700 80 DCRKILNLLERMFL--IST---RGD--E--IYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPD 143 (300)
T ss_pred HHHHHHHHHHHHHh--hcc---ccC--C--CccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCcc
Confidence 88887776654321 000 000 0 01223566666666677899999999986 888887766
No 290
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.50 E-value=0.00017 Score=70.03 Aligned_cols=68 Identities=13% Similarity=0.179 Sum_probs=38.9
Q ss_pred CCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCC
Q 047219 388 NGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLP 461 (567)
Q Consensus 388 ~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P 461 (567)
++++|+|||++.+.+.+....... .. .+..+.. ....+.-||.+|..+..+++.++...+..+++..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~-~~----~~~~l~~-hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKV-PE----IIEFLAQ-HRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T-----H----HHHGGGG-CCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccccccc-hH----HHHHHHH-hCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 479999999999988876532111 12 2233322 23456788889999999999999877666665433
No 291
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.47 E-value=0.00099 Score=72.05 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=71.3
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVA 403 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~ 403 (567)
.++|+||.+|||||+++.+.+..... .++++..+.......- .+.+ ..+..+... ....+|||||+.+..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~------~iy~~~~d~~~~~~~l-~d~~-~~~~~~~~~-~~~yifLDEIq~v~~- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE------IIYINFDDLRLDRIEL-LDLL-RAYIELKER-EKSYIFLDEIQNVPD- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc------eEEEEecchhcchhhH-HHHH-HHHHHhhcc-CCceEEEecccCchh-
Confidence 89999999999999998888887331 4555544443322111 1111 122222222 347999999998742
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC--CCCCChHHHhccceEEEecCCCHHHHHH
Q 047219 404 RDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR--KQDLDPALISRFDSMITFGLPDHENRQE 468 (567)
Q Consensus 404 ~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~--~~~Ld~aL~sRf~~~I~i~~P~~~eR~e 468 (567)
+...+-...|.... ++++.+++.. .....+.|..|. ..+++.+.+..+...
T Consensus 109 -----------W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 -----------WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred -----------HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 22222223332111 3444443322 445667777896 888899999999865
No 292
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.45 E-value=0.00015 Score=84.65 Aligned_cols=160 Identities=24% Similarity=0.252 Sum_probs=102.5
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhch-------hHHHHHHHH---HHHh-cCCCCcEE
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGE-------SERLLGKVF---SLAN-ELPNGAII 392 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~-------~~~~l~~~f---~~A~-~~a~~~IL 392 (567)
.++++||||+|||+.++++|.++ +..++..+.+...+++... ....+...| .... ......+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~------g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vi 432 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKEL------GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLI 432 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhc------ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEE
Confidence 46999999999999999999999 7778888887665543221 111122222 0000 11234699
Q ss_pred EEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHH
Q 047219 393 FLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQ 472 (567)
Q Consensus 393 fIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~ 472 (567)
++||+|-+.....+ .+..+-.... ....-+|+++|...........|-+..++|..|+...+..-+..
T Consensus 433 l~devD~~~~~dRg--------~v~~l~~l~~----ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~s 500 (871)
T KOG1968|consen 433 LMDEVDGMFGEDRG--------GVSKLSSLCK----KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMS 500 (871)
T ss_pred EEeccccccchhhh--------hHHHHHHHHH----hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhh
Confidence 99999998752111 1122222221 23456788888766666555555446899999999888877776
Q ss_pred HHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 473 YAKH----LTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 473 ~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
.+.. +....++++...+ ++||++.+.+..
T Consensus 501 i~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 501 ICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred hhcccceecCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 6543 4555677776655 668888877654
No 293
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.45 E-value=0.0088 Score=62.28 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=26.7
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAM 349 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~ 349 (567)
..+..+.|+|+=|+|||++.+.+-+.+...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 678889999999999999999999888543
No 294
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.41 E-value=0.00018 Score=79.75 Aligned_cols=56 Identities=20% Similarity=0.342 Sum_probs=44.1
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
-|+|+.|+++++.++.+.+...... + ......++|.||||+|||+||+.|++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~g------l---------~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQG------L---------EEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHh------c---------CCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 4889999999999998877533111 1 234467899999999999999999998753
No 295
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.41 E-value=0.0011 Score=71.09 Aligned_cols=80 Identities=21% Similarity=0.332 Sum_probs=51.7
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh------hch--------hHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY------YGE--------SERLLGKVFSLAN 384 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~------~G~--------~~~~l~~~f~~A~ 384 (567)
..+..-++|+|+||+|||+++..++...... +.++++++.++-.... +|. .+..+..+++.+.
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~~---g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAKR---GGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4566779999999999999999998876432 3457777654322211 111 1122344555554
Q ss_pred cCCCCcEEEEcCcchhhh
Q 047219 385 ELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 385 ~~a~~~ILfIDEID~L~~ 402 (567)
... +.+|+||+|..+..
T Consensus 156 ~~~-~~lVVIDSIq~l~~ 172 (372)
T cd01121 156 ELK-PDLVIIDSIQTVYS 172 (372)
T ss_pred hcC-CcEEEEcchHHhhc
Confidence 444 58999999998853
No 296
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.41 E-value=0.00096 Score=69.94 Aligned_cols=117 Identities=23% Similarity=0.302 Sum_probs=64.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh----hc------------hhHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY----YG------------ESERLLGKVFSL 382 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~----~G------------~~~~~l~~~f~~ 382 (567)
.+...-+.++||||||||+||-.++.+.... +..+++++.+.-...- +| ..+..+..+...
T Consensus 52 lp~G~iteI~Gp~GsGKTtLal~~~~~~~~~---g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l 128 (325)
T cd00983 52 YPKGRIIEIYGPESSGKTTLALHAIAEAQKL---GGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence 4556678999999999999999888765432 5567777765422210 11 122222222222
Q ss_pred HhcCCCCcEEEEcCcchhhhhhh--hhh----HHHHHHHHHHHHHhhcCcccCCcEEEEEeeC
Q 047219 383 ANELPNGAIIFLDEVDSFAVARD--SEM----HEATRRILSVLLRQIDGFEQDKKVVVIAATN 439 (567)
Q Consensus 383 A~~~a~~~ILfIDEID~L~~~~q--~~l----~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN 439 (567)
++.. ...+|+||-+..+.+..+ ... .....+.+.+++..+...-...++.+|.+..
T Consensus 129 i~s~-~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 129 VRSG-AVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred Hhcc-CCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 2233 358999999998875311 111 0111233344444443333445666666543
No 297
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.39 E-value=0.0011 Score=66.07 Aligned_cols=41 Identities=27% Similarity=0.338 Sum_probs=30.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE 362 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~ 362 (567)
.+.+..++++|+||||||+++..++...... +..+.+++.+
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e 62 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTE 62 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcC
Confidence 5667789999999999999999997654222 4456666543
No 298
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.39 E-value=0.0012 Score=66.07 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=27.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
.+....+++.|+||||||+++..++...... +..+.+++.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~~ 60 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVST 60 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEeC
Confidence 4556789999999999999975555444211 344555554
No 299
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.37 E-value=0.0019 Score=70.83 Aligned_cols=80 Identities=24% Similarity=0.338 Sum_probs=52.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh------hch--------hHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY------YGE--------SERLLGKVFSLAN 384 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~------~G~--------~~~~l~~~f~~A~ 384 (567)
..+..-++|+|+||+|||+++..++...... +.++++++.++-.... +|. .+..+..+++...
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~---g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAAA---GGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 4556779999999999999999998876432 4567777765433322 111 1122344555554
Q ss_pred cCCCCcEEEEcCcchhhh
Q 047219 385 ELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 385 ~~a~~~ILfIDEID~L~~ 402 (567)
+.. +.+|+||+|..+..
T Consensus 154 ~~~-~~lVVIDSIq~l~~ 170 (446)
T PRK11823 154 EEK-PDLVVIDSIQTMYS 170 (446)
T ss_pred hhC-CCEEEEechhhhcc
Confidence 444 48999999998854
No 300
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.36 E-value=0.0021 Score=60.69 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=25.7
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++-.++|.||+|||||+|.|++|....
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 46677899999999999999999998764
No 301
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.33 E-value=0.0021 Score=68.80 Aligned_cols=101 Identities=15% Similarity=0.230 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH-
Q 047219 286 DQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV- 364 (567)
Q Consensus 286 ~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l- 364 (567)
.+.++.+.+.+...+..+..+ ...+..++|.||+|+||||++..||..+... +..+..+++...
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~------------~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~---GkkVglI~aDt~R 281 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF------------EKEVQTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSR 281 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc------------ccCCcEEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEEecCCcc
Confidence 455666666555443332111 2345789999999999999999999887432 223333333211
Q ss_pred ------Hhhh---------hchhHHHHHHHHHHHhcCCCCcEEEEcCcchhh
Q 047219 365 ------MSKY---------YGESERLLGKVFSLANELPNGAIIFLDEVDSFA 401 (567)
Q Consensus 365 ------~s~~---------~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~ 401 (567)
...| .......+...+..+.......+||||-.....
T Consensus 282 iaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 282 IGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNY 333 (436)
T ss_pred hHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccC
Confidence 1111 012333444455444432224799999887754
No 302
>PHA02624 large T antigen; Provisional
Probab=97.32 E-value=0.0026 Score=71.09 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=65.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
.+..+.++|+||||||||+++.+|.+.+. -..+.++++.-.+.+ .+.-+. ...+.+||++.
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~------G~vlsVNsPt~ks~F----------wL~pl~---D~~~~l~dD~t 488 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCG------GKSLNVNCPPDKLNF----------ELGCAI---DQFMVVFEDVK 488 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcC------CeEEEeeCCcchhHH----------Hhhhhh---hceEEEeeecc
Confidence 34456899999999999999999999994 234555543322211 111111 24688888885
Q ss_pred hhhhhhhh-hhHHHHHHHHHHHHHhhcCc-c-------cC-Cc---EEEEEeeCCCCCCChHHHhccceEEEec
Q 047219 399 SFAVARDS-EMHEATRRILSVLLRQIDGF-E-------QD-KK---VVVIAATNRKQDLDPALISRFDSMITFG 459 (567)
Q Consensus 399 ~L~~~~q~-~l~~~~~~vl~~LL~~ld~~-~-------~~-~~---viVIaaTN~~~~Ld~aL~sRf~~~I~i~ 459 (567)
.-.....+ ..+..+. -+..|...+||- . .+ .. --+|.||| ...++..+.-||..++.|.
T Consensus 489 ~~~~~~~~Lp~G~~~d-Nl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~N-ey~iP~T~~~Rf~~~~~F~ 560 (647)
T PHA02624 489 GQPADNKDLPSGQGMN-NLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMN-EYLIPQTVKARFAKVLDFK 560 (647)
T ss_pred ccccccccCCcccccc-hhhHHHhhcCCCCccccchhccCchhccCCCeEEeec-CcccchhHHHHHHHhcccc
Confidence 32210000 0000000 012333344543 1 11 01 13466777 5678889999998888874
No 303
>PRK06762 hypothetical protein; Provisional
Probab=97.30 E-value=0.00096 Score=62.71 Aligned_cols=41 Identities=24% Similarity=0.447 Sum_probs=32.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY 368 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~ 368 (567)
|.-++|+|+||+||||+|+.+++.+ +.++..++...+...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l------~~~~~~i~~D~~r~~l 42 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL------GRGTLLVSQDVVRRDM 42 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh------CCCeEEecHHHHHHHh
Confidence 4568899999999999999999998 3346667766665543
No 304
>PRK10536 hypothetical protein; Provisional
Probab=97.30 E-value=0.002 Score=65.20 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=35.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
....+..|-+.......+...+. . ..-+++.||+|||||+||.+++.+
T Consensus 50 ~~~~~~~i~p~n~~Q~~~l~al~----------------------~-~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 50 DSRDTSPILARNEAQAHYLKAIE----------------------S-KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred hhcCCccccCCCHHHHHHHHHHh----------------------c-CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34556667777777766665442 1 247999999999999999999985
No 305
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.29 E-value=0.00022 Score=63.19 Aligned_cols=22 Identities=36% Similarity=0.877 Sum_probs=21.2
Q ss_pred EEeeCCCCCcHHHHHHHHHHHh
Q 047219 325 VLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l 346 (567)
++|.|+||+||||+|+.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 306
>PRK04296 thymidine kinase; Provisional
Probab=97.29 E-value=0.0016 Score=63.09 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=21.1
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.-.+++||+|+|||+++..++..+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~ 27 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYE 27 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999988887763
No 307
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.27 E-value=0.00099 Score=60.58 Aligned_cols=38 Identities=26% Similarity=0.635 Sum_probs=30.8
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhc
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYG 370 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G 370 (567)
+++.|+||+||||+|+.+++.+ + +..++...+...+.+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~------~--~~~i~~D~~~~~~~~ 39 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL------G--AVVISQDEIRRRLAG 39 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS------T--EEEEEHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHC------C--CEEEeHHHHHHHHcc
Confidence 6899999999999999999988 3 556777776665544
No 308
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.27 E-value=0.0061 Score=72.35 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=80.8
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhh-----HHhhh---h-----ch---------------
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEV-----VMSKY---Y-----GE--------------- 371 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~-----l~s~~---~-----G~--------------- 371 (567)
...+-++++||+|.|||+++...++... .+..++++..+ +...+ + +.
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~~~-----~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 104 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAGKN-----NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYAS 104 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHhCC-----CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCC
Confidence 3456699999999999999998876542 11222332211 10000 0 00
Q ss_pred hHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCC-hHHHh
Q 047219 372 SERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLD-PALIS 450 (567)
Q Consensus 372 ~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld-~aL~s 450 (567)
....+..++........+.+|+|||+|.+... ...+.+..|+.. .+.++.+|.++.....+. ..++-
T Consensus 105 ~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~-------~~~~~l~~l~~~-----~~~~~~lv~~sR~~~~~~~~~l~~ 172 (903)
T PRK04841 105 LSSLFAQLFIELADWHQPLYLVIDDYHLITNP-------EIHEAMRFFLRH-----QPENLTLVVLSRNLPPLGIANLRV 172 (903)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCcCcCCCh-------HHHHHHHHHHHh-----CCCCeEEEEEeCCCCCCchHhHHh
Confidence 01112233333333344689999999998422 222333444432 244555555664422232 12221
Q ss_pred ccceEEEec----CCCHHHHHHHHHHHHH-hhCHHHHHHHHHhccCC
Q 047219 451 RFDSMITFG----LPDHENRQEIAAQYAK-HLTKAELAELATATEEM 492 (567)
Q Consensus 451 Rf~~~I~i~----~P~~~eR~eIL~~~~~-~~~~~~l~~la~~t~g~ 492 (567)
-+..+++. ..+.++-.+.+...+. .+..+....+.+.|.|.
T Consensus 173 -~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~~~~~~~~l~~~t~Gw 218 (903)
T PRK04841 173 -RDQLLEIGSQQLAFDHQEAQQFFDQRLSSPIEAAESSRLCDDVEGW 218 (903)
T ss_pred -cCcceecCHHhCCCCHHHHHHHHHhccCCCCCHHHHHHHHHHhCCh
Confidence 12234454 6688888887765432 35566667777777664
No 309
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.27 E-value=0.0016 Score=64.10 Aligned_cols=41 Identities=34% Similarity=0.516 Sum_probs=31.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE 362 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~ 362 (567)
.....-++++|+||+|||+++..++.+.... +.++++++.+
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~---g~~v~yi~~e 56 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVETAGQ---GKKVAYIDTE 56 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEECC
Confidence 4455669999999999999999999877432 4556666543
No 310
>PRK08118 topology modulation protein; Reviewed
Probab=97.25 E-value=0.00065 Score=64.53 Aligned_cols=31 Identities=23% Similarity=0.540 Sum_probs=26.6
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
.+++.||||+||||+|+.|++.+ +++++.++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l------~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL------NIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCCceecc
Confidence 58999999999999999999998 55666554
No 311
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.24 E-value=0.0025 Score=56.11 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
++++++||+|+|||+++-.++....
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHH
Confidence 3689999999999998888887764
No 312
>PRK05973 replicative DNA helicase; Provisional
Probab=97.23 E-value=0.0027 Score=63.81 Aligned_cols=41 Identities=29% Similarity=0.314 Sum_probs=29.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE 362 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~ 362 (567)
..+...++|.|+||+|||+++-.++.+.... +.++++++.+
T Consensus 61 l~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vlyfSlE 101 (237)
T PRK05973 61 LKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGVFFTLE 101 (237)
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEEEEe
Confidence 5666789999999999999999887765322 4445555543
No 313
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.22 E-value=0.00029 Score=66.73 Aligned_cols=49 Identities=27% Similarity=0.508 Sum_probs=31.7
Q ss_pred ccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 282 IAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 282 IiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
++|.+++++++...+. . .....++.++|+|++|+|||++++++...+..
T Consensus 2 fvgR~~e~~~l~~~l~-~-----------------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A-----------------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G-----------------TSS-----EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-H-----------------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5788998888887663 1 12456789999999999999999998887743
No 314
>PRK07261 topology modulation protein; Provisional
Probab=97.22 E-value=0.0017 Score=61.79 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.3
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
-+++.|+||+||||+|+.++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999887
No 315
>PHA02774 E1; Provisional
Probab=97.18 E-value=0.0024 Score=71.16 Aligned_cols=26 Identities=23% Similarity=0.403 Sum_probs=24.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
-+.++|+||||||||++|-+|++.+.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999984
No 316
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.17 E-value=0.0012 Score=70.63 Aligned_cols=86 Identities=21% Similarity=0.192 Sum_probs=50.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh------hHHhhh--------hchhHHH----HHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE------VVMSKY--------YGESERL----LGKVF 380 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~------~l~s~~--------~G~~~~~----l~~~f 380 (567)
...+..++|.||||+|||++++.|++......+...-++.+..+ ++.... +++.... ...+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 56778899999999999999999999875432211123333322 111111 1211111 11222
Q ss_pred HHHh---cCCCCcEEEEcCcchhhhhh
Q 047219 381 SLAN---ELPNGAIIFLDEVDSFAVAR 404 (567)
Q Consensus 381 ~~A~---~~a~~~ILfIDEID~L~~~~ 404 (567)
+.|+ ......+|||||++.++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~arAq 271 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRLARAY 271 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHHHHHH
Confidence 2222 33446899999999997654
No 317
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.17 E-value=0.0027 Score=68.25 Aligned_cols=139 Identities=16% Similarity=0.241 Sum_probs=71.6
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCC---CCCCcCeEEechhhHHh----hhhc----------hhHHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAM---PWQGVPLMYVPLEVVMS----KYYG----------ESERLLGKVFSL 382 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~---~~~~~~~~~i~~~~l~s----~~~G----------~~~~~l~~~f~~ 382 (567)
..|..++|+||+|+||||++..+|..+... .-..+.++.+++-.... +.++ .....+...+..
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 346789999999999999999999876321 00123334444321111 1111 122223333332
Q ss_pred HhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccC-CcEEEEEeeCCCCCCChHHHhcc----ceEEE
Q 047219 383 ANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD-KKVVVIAATNRKQDLDPALISRF----DSMIT 457 (567)
Q Consensus 383 A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~-~~viVIaaTN~~~~Ld~aL~sRf----~~~I~ 457 (567)
. ....+|+||++..+... .. .+..+...++....+ ..++|+.+|.....+.. ...+| -..+-
T Consensus 252 ~---~~~DlVLIDTaGr~~~~-----~~----~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~-~~~~~~~~~~~~~I 318 (388)
T PRK12723 252 S---KDFDLVLVDTIGKSPKD-----FM----KLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE-IFHQFSPFSYKTVI 318 (388)
T ss_pred h---CCCCEEEEcCCCCCccC-----HH----HHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH-HHHHhcCCCCCEEE
Confidence 2 33579999999987532 11 123333333333223 34566666666555553 33433 12455
Q ss_pred ecCCCHHHHHHHHH
Q 047219 458 FGLPDHENRQEIAA 471 (567)
Q Consensus 458 i~~P~~~eR~eIL~ 471 (567)
|...|...+.-.+-
T Consensus 319 ~TKlDet~~~G~~l 332 (388)
T PRK12723 319 FTKLDETTCVGNLI 332 (388)
T ss_pred EEeccCCCcchHHH
Confidence 65666555544333
No 318
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.15 E-value=0.0024 Score=63.03 Aligned_cols=44 Identities=23% Similarity=0.141 Sum_probs=30.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC---CCCcCeEEechh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMP---WQGVPLMYVPLE 362 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~---~~~~~~~~i~~~ 362 (567)
.....-+.|+||||+|||+++..++....... -....+++++.+
T Consensus 16 ~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 16 IPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 45667799999999999999999987653210 001456666654
No 319
>PRK09354 recA recombinase A; Provisional
Probab=97.15 E-value=0.0022 Score=67.78 Aligned_cols=80 Identities=25% Similarity=0.315 Sum_probs=49.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhh-h---hc------------hhHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSK-Y---YG------------ESERLLGKVFSL 382 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~-~---~G------------~~~~~l~~~f~~ 382 (567)
.+...-++|+||||||||+||-.++.+.... +-.+++++.+.-... + +| ..+..+..+-..
T Consensus 57 ip~G~IteI~G~~GsGKTtLal~~~~~~~~~---G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~l 133 (349)
T PRK09354 57 LPRGRIVEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTL 133 (349)
T ss_pred CcCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 4566778999999999999999887665433 556777776542221 1 11 112222222222
Q ss_pred HhcCCCCcEEEEcCcchhhh
Q 047219 383 ANELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 383 A~~~a~~~ILfIDEID~L~~ 402 (567)
.+. ....+|+||-+-.|.+
T Consensus 134 i~s-~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 134 VRS-GAVDLIVVDSVAALVP 152 (349)
T ss_pred hhc-CCCCEEEEeChhhhcc
Confidence 223 3358999999998875
No 320
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.14 E-value=0.00049 Score=64.60 Aligned_cols=32 Identities=22% Similarity=0.451 Sum_probs=27.6
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEE
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMY 358 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~ 358 (567)
++..++|+|+||||||++|+.+++.+ +.+++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l------~~~~~d 34 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL------GYDFID 34 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh------CCCEEE
Confidence 46789999999999999999999998 555554
No 321
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.10 E-value=0.00059 Score=64.08 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=34.4
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSK 367 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~ 367 (567)
+..|+|+|.||+|||++|+++.+.+... +.+++.+++..+...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~---g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR---GIKVYLLDGDNLRHG 44 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT---TS-EEEEEHHHHCTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEecCcchhhc
Confidence 4568999999999999999999998654 677888888776543
No 322
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.08 E-value=0.003 Score=62.76 Aligned_cols=45 Identities=18% Similarity=0.097 Sum_probs=30.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCC-CCC--CcCeEEechhh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAM-PWQ--GVPLMYVPLEV 363 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~-~~~--~~~~~~i~~~~ 363 (567)
.....-+.|+||||||||+++..++...... .+. +..+++++.+.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 4556678999999999999999998653211 110 24566666543
No 323
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.0011 Score=62.90 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=40.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY 368 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~ 368 (567)
...+..++|+|.+|+||||+|.++.+.+... +..++.+++..+...+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~---G~~~y~LDGDnvR~gL 66 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAK---GYHVYLLDGDNVRHGL 66 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHc---CCeEEEecChhHhhcc
Confidence 5667889999999999999999999999766 7789999988776543
No 324
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.07 E-value=0.0015 Score=62.24 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=21.0
Q ss_pred EEeeCCCCCcHHHHHHHHHHHh
Q 047219 325 VLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l 346 (567)
++|.|+||+||||+|+.+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999999988
No 325
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.07 E-value=0.0054 Score=57.51 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=20.3
Q ss_pred ceEEeeCCCCCcHHH-HHHHHHHHhC
Q 047219 323 RAVLFEGPPGTGKTS-CARVIANQAG 347 (567)
Q Consensus 323 ~~VLL~GppGTGKT~-LAraIA~~l~ 347 (567)
..+++.||+|+|||+ ++..+.+...
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~ 50 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALK 50 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhc
Confidence 789999999999999 6666666553
No 326
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.07 E-value=0.004 Score=61.61 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=49.9
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCC--CCCCcCeEEechh-hHHhhhhchhH-------------HHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAM--PWQGVPLMYVPLE-VVMSKYYGESE-------------RLLGKVFSLA 383 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~~~~~~~~~i~~~-~l~s~~~G~~~-------------~~l~~~f~~A 383 (567)
....+.|+.|||||||||+.|-||+.+... .|....+.-++.. ++..-..|... -+-..+....
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 445678999999999999999999987432 3444455555543 33333322211 1112233344
Q ss_pred hcCCCCcEEEEcCcchh
Q 047219 384 NELPNGAIIFLDEVDSF 400 (567)
Q Consensus 384 ~~~a~~~ILfIDEID~L 400 (567)
+.+. |-++++|||...
T Consensus 215 rsm~-PEViIvDEIGt~ 230 (308)
T COG3854 215 RSMS-PEVIIVDEIGTE 230 (308)
T ss_pred HhcC-CcEEEEeccccH
Confidence 4555 489999999875
No 327
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.02 E-value=0.0017 Score=63.20 Aligned_cols=26 Identities=31% Similarity=0.581 Sum_probs=23.0
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCC
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAM 349 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~ 349 (567)
-++|+|+||+|||++|+.+++++...
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh
Confidence 37899999999999999999998543
No 328
>PRK13949 shikimate kinase; Provisional
Probab=97.02 E-value=0.0075 Score=57.35 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=27.3
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
+.++|.|+||+|||++++.+|+.+ +.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l------~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALAREL------GLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc------CCCeeccc
Confidence 368999999999999999999999 55666554
No 329
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.02 E-value=0.018 Score=57.92 Aligned_cols=134 Identities=18% Similarity=0.289 Sum_probs=73.2
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhh---------c-----hhHHH-------HHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYY---------G-----ESERL-------LGK 378 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~---------G-----~~~~~-------l~~ 378 (567)
..+-.+.+.|++|+|||+++..+-..+... + ..+.+-.+.....+. . +.+.. +..
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~~~~-f---~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k 86 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYLRHK-F---DHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEK 86 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhccc-C---CEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999998776432 1 122222211111111 0 00101 111
Q ss_pred HHHHHh-c-CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEE
Q 047219 379 VFSLAN-E-LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMI 456 (567)
Q Consensus 379 ~f~~A~-~-~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I 456 (567)
...... . ..+..+|+||++..-. ...+.+..++.. ...-++.+|.++.....+++.++.-.+..+
T Consensus 87 ~~~k~~~~k~~~~~LiIlDD~~~~~---------~k~~~l~~~~~~----gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i 153 (241)
T PF04665_consen 87 YIKKSPQKKNNPRFLIILDDLGDKK---------LKSKILRQFFNN----GRHYNISIIFLSQSYFHLPPNIRSNIDYFI 153 (241)
T ss_pred HhhhhcccCCCCCeEEEEeCCCCch---------hhhHHHHHHHhc----ccccceEEEEEeeecccCCHHHhhcceEEE
Confidence 111111 1 1346899999985310 112233444432 234568888888888999999988776666
Q ss_pred EecCCCHHHHHHHHH
Q 047219 457 TFGLPDHENRQEIAA 471 (567)
Q Consensus 457 ~i~~P~~~eR~eIL~ 471 (567)
-+. -+.++..-+++
T Consensus 154 ~~~-~s~~dl~~i~~ 167 (241)
T PF04665_consen 154 IFN-NSKRDLENIYR 167 (241)
T ss_pred Eec-CcHHHHHHHHH
Confidence 564 35555444433
No 330
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.00 E-value=0.0066 Score=60.84 Aligned_cols=41 Identities=37% Similarity=0.528 Sum_probs=29.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE 362 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~ 362 (567)
..++..+|++||||||||+++..++.+.... +-++++++.+
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs~e 58 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVALE 58 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEEee
Confidence 5667889999999999999998776553221 4456665543
No 331
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0024 Score=68.22 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=23.8
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+..++|.||+|+||||++..++..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 446789999999999999999999875
No 332
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.94 E-value=0.0055 Score=60.58 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~ 344 (567)
++.++|+||.|+|||++.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37799999999999999999984
No 333
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.93 E-value=0.0025 Score=67.45 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=25.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+|++++|||.-|||||+|.-.....+.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~ 139 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALP 139 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCC
Confidence 45699999999999999999998886663
No 334
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.93 E-value=0.0024 Score=65.24 Aligned_cols=97 Identities=12% Similarity=0.138 Sum_probs=56.6
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCe
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPL 356 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~ 356 (567)
.++++++-..+..+.+.+++. .....++|.||+|+||||+++++...+... +..+
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~----------------------~~~GlilisG~tGSGKTT~l~all~~i~~~---~~~i 111 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE----------------------KPHGIILVTGPTGSGKTTTLYSALSELNTP---EKNI 111 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh----------------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCC---CCeE
Confidence 456777666666666655442 234568999999999999999998877532 2223
Q ss_pred EEechh-hHH-----h-hhhchhHHHHHHHHHHHhcCCCCcEEEEcCcch
Q 047219 357 MYVPLE-VVM-----S-KYYGESERLLGKVFSLANELPNGAIIFLDEVDS 399 (567)
Q Consensus 357 ~~i~~~-~l~-----s-~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~ 399 (567)
+.+..+ ++. . .+..+...........+.+.. +.+|+++||..
T Consensus 112 itiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~-PD~i~vgEiR~ 160 (264)
T cd01129 112 ITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQD-PDIIMVGEIRD 160 (264)
T ss_pred EEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccC-CCEEEeccCCC
Confidence 333211 100 0 000111112344555555655 48999999965
No 335
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.93 E-value=0.0077 Score=65.82 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=25.7
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
..|..++|+|++|+||||++..+|..+..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 45788999999999999999999988754
No 336
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.92 E-value=0.0051 Score=62.05 Aligned_cols=37 Identities=16% Similarity=0.527 Sum_probs=28.7
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV 364 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l 364 (567)
|+|+|.||+||||+|+.+++.+... +.++..++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~---~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK---NIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCceEEEccHHH
Confidence 6899999999999999999988533 345666665544
No 337
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.91 E-value=0.011 Score=64.59 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=22.5
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
+..++|.||+|+||||++..+|..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999887663
No 338
>PRK14974 cell division protein FtsY; Provisional
Probab=96.90 E-value=0.011 Score=62.45 Aligned_cols=29 Identities=31% Similarity=0.477 Sum_probs=24.7
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
..|.-++|.|+||+||||++..+|..+..
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999887743
No 339
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.89 E-value=0.0056 Score=65.18 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
...+...+|+||||||||++++.+++.+..
T Consensus 130 iGkGQR~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 130 IGKGQRGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 345567899999999999999999998744
No 340
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.87 E-value=0.0013 Score=64.08 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.8
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
-++|.||+|+||||+++++...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998875
No 341
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.86 E-value=0.004 Score=66.24 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.5
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
-+++.|.||||||.||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999998
No 342
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.86 E-value=0.0031 Score=61.67 Aligned_cols=111 Identities=20% Similarity=0.266 Sum_probs=62.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
......++|.|+-|+|||++.+.|+.+.... .....+ ..+....+ . ..-++.|||++
T Consensus 49 ~k~d~~lvl~G~QG~GKStf~~~L~~~~~~d-----~~~~~~-----------~kd~~~~l----~---~~~iveldEl~ 105 (198)
T PF05272_consen 49 CKNDTVLVLVGKQGIGKSTFFRKLGPEYFSD-----SINDFD-----------DKDFLEQL----Q---GKWIVELDELD 105 (198)
T ss_pred CcCceeeeEecCCcccHHHHHHHHhHHhccC-----ccccCC-----------CcHHHHHH----H---HhHheeHHHHh
Confidence 3445678899999999999999997664211 001000 01111111 1 13689999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhcCc---------ccCCcEEEEEeeCCCCCCCh-HHHhccceEEEecC
Q 047219 399 SFAVARDSEMHEATRRILSVLLRQIDGF---------EQDKKVVVIAATNRKQDLDP-ALISRFDSMITFGL 460 (567)
Q Consensus 399 ~L~~~~q~~l~~~~~~vl~~LL~~ld~~---------~~~~~viVIaaTN~~~~Ld~-aL~sRf~~~I~i~~ 460 (567)
.+..+..+. +.+.+-...+.+ ..+...++|+|||..+-|.. .=-||| ..+++..
T Consensus 106 ~~~k~~~~~-------lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~~ 169 (198)
T PF05272_consen 106 GLSKKDVEA-------LKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVSK 169 (198)
T ss_pred hcchhhHHH-------HHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEcC
Confidence 986332221 112222222222 12356889999998765543 344688 7777754
No 343
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.86 E-value=0.0014 Score=66.86 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=56.8
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcC
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVP 355 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~ 355 (567)
..++++++-.....+.+.+.+... .....++++.|++|+||||+++++...++.. ...
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~-------------------v~~~~~ili~G~tGSGKTT~l~all~~i~~~---~~~ 157 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSA-------------------VRGRGNILISGPTGSGKTTLLNALLEEIPPE---DER 157 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHC-------------------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTT---TSE
T ss_pred cccHhhccCchhhHHHHHHHHhhc-------------------cccceEEEEECCCccccchHHHHHhhhcccc---ccc
Confidence 346666665555555555555432 2346889999999999999999999988543 122
Q ss_pred eEEechh-hHHhh------hh-chhHHHHHHHHHHHhcCCCCcEEEEcCcch
Q 047219 356 LMYVPLE-VVMSK------YY-GESERLLGKVFSLANELPNGAIIFLDEVDS 399 (567)
Q Consensus 356 ~~~i~~~-~l~s~------~~-G~~~~~l~~~f~~A~~~a~~~ILfIDEID~ 399 (567)
++.+... ++.-. +. .........++..+.+.. +.+|+++||-.
T Consensus 158 iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~-pD~iiigEiR~ 208 (270)
T PF00437_consen 158 IVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQD-PDVIIIGEIRD 208 (270)
T ss_dssp EEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS---SEEEESCE-S
T ss_pred eEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCC-CCcccccccCC
Confidence 2222211 11000 00 011223445566666665 48999999975
No 344
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.85 E-value=0.0046 Score=63.38 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=24.3
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
..+++|.||+|+||||+.++++..+..
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 368999999999999999999998753
No 345
>PRK13695 putative NTPase; Provisional
Probab=96.85 E-value=0.011 Score=56.08 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=21.2
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.++|.|++|+|||++++.+++.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988763
No 346
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.81 E-value=0.011 Score=56.42 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=21.5
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+|+.|+||+|||++|..++..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58999999999999999999887
No 347
>PF13479 AAA_24: AAA domain
Probab=96.79 E-value=0.0039 Score=61.52 Aligned_cols=21 Identities=48% Similarity=0.888 Sum_probs=19.2
Q ss_pred CceEEeeCCCCCcHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVI 342 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraI 342 (567)
+..++|||+||+|||++|..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC
Confidence 467999999999999999988
No 348
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.79 E-value=0.0058 Score=70.80 Aligned_cols=116 Identities=22% Similarity=0.246 Sum_probs=61.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh-h---hhch------------hHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS-K---YYGE------------SERLLGKVFSL 382 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s-~---~~G~------------~~~~l~~~f~~ 382 (567)
......++|+||||||||+|+..++...... +-.+++++.+.-.. . -+|- .+..+..+-..
T Consensus 57 ip~GsiteI~G~~GsGKTtLal~~~~~a~~~---G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~l 133 (790)
T PRK09519 57 LPRGRVIEIYGPESSGKTTVALHAVANAQAA---GGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADML 133 (790)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHH
Confidence 4567789999999999999996655443222 45577777654222 1 1111 12222222222
Q ss_pred HhcCCCCcEEEEcCcchhhhhhh------hhhHHHHHHHHHHHHHhhcCcccCCcEEEEEee
Q 047219 383 ANELPNGAIIFLDEVDSFAVARD------SEMHEATRRILSVLLRQIDGFEQDKKVVVIAAT 438 (567)
Q Consensus 383 A~~~a~~~ILfIDEID~L~~~~q------~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaT 438 (567)
.... ...+|+||-|..|....+ +......++.+.+++..+..+-...++.+|.|-
T Consensus 134 v~~~-~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~nvtvi~TN 194 (790)
T PRK09519 134 IRSG-ALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFIN 194 (790)
T ss_pred hhcC-CCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 2222 358999999998875211 111112233334444444444334555666553
No 349
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.79 E-value=0.018 Score=55.18 Aligned_cols=26 Identities=19% Similarity=0.158 Sum_probs=23.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~ 344 (567)
..++.-+.|.||+|+|||||.+++..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 56777899999999999999999964
No 350
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.79 E-value=0.0023 Score=67.92 Aligned_cols=75 Identities=13% Similarity=0.202 Sum_probs=43.6
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh-hHH---------hhhhchhHHHHHHHHHHHhcCCCCc
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE-VVM---------SKYYGESERLLGKVFSLANELPNGA 390 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~-~l~---------s~~~G~~~~~l~~~f~~A~~~a~~~ 390 (567)
+...+++.||+|+||||+++++.+.+.... +..++.+..+ ++. ..-.|.....+...+..+.... +.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~--~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~-pd 197 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNA--AGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALRED-PD 197 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCC--CCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccC-CC
Confidence 346789999999999999999998875321 1222222211 110 0011221122344455555555 48
Q ss_pred EEEEcCcc
Q 047219 391 IIFLDEVD 398 (567)
Q Consensus 391 ILfIDEID 398 (567)
+|++||+-
T Consensus 198 ~i~vgEir 205 (343)
T TIGR01420 198 VILIGEMR 205 (343)
T ss_pred EEEEeCCC
Confidence 99999995
No 351
>PRK13947 shikimate kinase; Provisional
Probab=96.78 E-value=0.0014 Score=61.75 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=26.8
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
+++|.|+||||||++++.+|+.+ +.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l------g~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL------SFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh------CCCEEECc
Confidence 68999999999999999999999 66665543
No 352
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.77 E-value=0.0033 Score=58.15 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=23.5
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...++|++|-||||||+++..||..+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 34679999999999999999999887
No 353
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.76 E-value=0.0046 Score=57.47 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=28.8
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHH
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVM 365 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~ 365 (567)
++|.|+||+|||++|+.++..+... +.+.+.++...+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~---g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQR---GRPVYVLDGDNVR 39 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCHHHH
Confidence 6899999999999999999988432 3345666655444
No 354
>PRK14532 adenylate kinase; Provisional
Probab=96.76 E-value=0.0026 Score=61.12 Aligned_cols=36 Identities=19% Similarity=0.477 Sum_probs=27.9
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSK 367 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~ 367 (567)
.++|.|+||+||||+|+.+|+.+ + +..++..++..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~------g--~~~is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER------G--MVQLSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc------C--CeEEeCcHHHHH
Confidence 58999999999999999999988 3 444555444443
No 355
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.74 E-value=0.011 Score=60.12 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=29.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE 362 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~ 362 (567)
......++++|+||||||+++..++...... +-++++++.+
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~E 73 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTVE 73 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEec
Confidence 4566779999999999999999887654222 3455555543
No 356
>PRK03839 putative kinase; Provisional
Probab=96.74 E-value=0.0014 Score=62.60 Aligned_cols=30 Identities=27% Similarity=0.604 Sum_probs=25.6
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
.++|.|+||+||||+++.+|+.+ +++++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~------~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL------GYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCcEEeh
Confidence 48899999999999999999998 5556543
No 357
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.73 E-value=0.0061 Score=62.48 Aligned_cols=72 Identities=18% Similarity=0.279 Sum_probs=39.6
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh--hhh--chhHHHHHHHHH----HHhcCCCCcEEEEcC
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS--KYY--GESERLLGKVFS----LANELPNGAIIFLDE 396 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s--~~~--G~~~~~l~~~f~----~A~~~a~~~ILfIDE 396 (567)
|+|+|-||+|||++|+.|+..+... +..+..++.+.+.- .-| ...++..+..+. .+.. ...|+++|+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~---~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls--~~~iVI~Dd 78 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEK---GKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS--KDTIVILDD 78 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHT---T--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT--T-SEEEE-S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhc---CCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc--cCeEEEEeC
Confidence 7899999999999999999987543 45667777555541 112 123444444333 3322 247999999
Q ss_pred cchhh
Q 047219 397 VDSFA 401 (567)
Q Consensus 397 ID~L~ 401 (567)
...+-
T Consensus 79 ~nYiK 83 (270)
T PF08433_consen 79 NNYIK 83 (270)
T ss_dssp ---SH
T ss_pred CchHH
Confidence 98874
No 358
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.72 E-value=0.0098 Score=57.94 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.6
Q ss_pred CCCC-ceEEeeCCCCCcHHHHHHHHH
Q 047219 319 SNRP-RAVLFEGPPGTGKTSCARVIA 343 (567)
Q Consensus 319 ~~~p-~~VLL~GppGTGKT~LAraIA 343 (567)
...+ +.++|+||.|+|||++.+.|+
T Consensus 24 i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 24 LGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ECCCceEEEEECCCCCChHHHHHHHH
Confidence 4444 469999999999999999998
No 359
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.71 E-value=0.0094 Score=56.15 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=25.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++..+.|.||+|+|||+|.+.|+....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56778899999999999999999998763
No 360
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.70 E-value=0.0077 Score=64.40 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=25.9
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
..+..+++.|+.|||||++.++|.+.+..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 56788999999999999999999998854
No 361
>PRK08233 hypothetical protein; Provisional
Probab=96.69 E-value=0.0091 Score=56.53 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=22.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.-|.|.|+||+||||+|+.|+..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578899999999999999999884
No 362
>PRK04040 adenylate kinase; Provisional
Probab=96.68 E-value=0.011 Score=57.43 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=23.6
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
+.-++++|+|||||||+++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999999983
No 363
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.67 E-value=0.21 Score=54.01 Aligned_cols=79 Identities=15% Similarity=0.154 Sum_probs=41.9
Q ss_pred cEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC---CCCCChHHHhccceEEEecCCCHHHH
Q 047219 390 AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR---KQDLDPALISRFDSMITFGLPDHENR 466 (567)
Q Consensus 390 ~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~---~~~Ld~aL~sRf~~~I~i~~P~~~eR 466 (567)
.||+||.+..-... ++...+.+-++...|.. +.---||..|+. ...|..+|-+|--+.|.+.-.+.+.-
T Consensus 150 PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~-------~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~A 221 (431)
T PF10443_consen 150 PVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQ-------NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESA 221 (431)
T ss_pred CEEEEcchhccCcc-cchHHHHHHHHHHHHHh-------cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHH
Confidence 69999999764322 22222222222222222 222233333332 33566777664337888887777777
Q ss_pred HHHHHHHHHh
Q 047219 467 QEIAAQYAKH 476 (567)
Q Consensus 467 ~eIL~~~~~~ 476 (567)
+..+..++..
T Consensus 222 k~yV~~~L~~ 231 (431)
T PF10443_consen 222 KQYVLSQLDE 231 (431)
T ss_pred HHHHHHHhcc
Confidence 6766666543
No 364
>PRK00625 shikimate kinase; Provisional
Probab=96.66 E-value=0.0018 Score=61.92 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=26.9
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
+++|.|.||+|||++++.+++.+ +.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l------~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL------SLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh------CCCEEEhh
Confidence 58999999999999999999999 66666554
No 365
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.66 E-value=0.0019 Score=59.52 Aligned_cols=39 Identities=28% Similarity=0.604 Sum_probs=28.9
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhc
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYG 370 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G 370 (567)
+++|+|+||+|||++|+.+++.+ +.+++ +...+.....|
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l------~~~~~--~~d~~~~~~~~ 39 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL------GLPFV--DLDELIEQRAG 39 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh------CCCEE--EchHHHHHHcC
Confidence 47899999999999999999998 55555 33344444333
No 366
>PLN02200 adenylate kinase family protein
Probab=96.64 E-value=0.0063 Score=61.07 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=24.7
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+.-+++.|+||+||||+|+.+++.+
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456678999999999999999999988
No 367
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.64 E-value=0.023 Score=56.25 Aligned_cols=27 Identities=37% Similarity=0.580 Sum_probs=22.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
...+..+|+.||||||||+++..++.+
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~ 42 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYN 42 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 566778999999999999998876643
No 368
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.61 E-value=0.0094 Score=57.41 Aligned_cols=20 Identities=30% Similarity=0.512 Sum_probs=18.5
Q ss_pred EEeeCCCCCcHHHHHHHHHH
Q 047219 325 VLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~ 344 (567)
++|+||.|.|||++.|.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 369
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.59 E-value=0.0059 Score=67.17 Aligned_cols=80 Identities=20% Similarity=0.251 Sum_probs=51.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh------hch--------hHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY------YGE--------SERLLGKVFSLAN 384 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~------~G~--------~~~~l~~~f~~A~ 384 (567)
..+..-++|.|+||+|||+|+..++...... +.++++++.++-...+ +|. .+..+..+...+.
T Consensus 91 i~~GsvilI~G~pGsGKTTL~lq~a~~~a~~---g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 91 IVPGSLILIGGDPGIGKSTLLLQVACQLAKN---QMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred ccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 4566779999999999999999998776432 3467777765433221 111 1112334444444
Q ss_pred cCCCCcEEEEcCcchhhh
Q 047219 385 ELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 385 ~~a~~~ILfIDEID~L~~ 402 (567)
+.. +.+++||.|..+..
T Consensus 168 ~~~-~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 168 EEN-PQACVIDSIQTLYS 184 (454)
T ss_pred hcC-CcEEEEecchhhcc
Confidence 444 58999999998753
No 370
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.59 E-value=0.022 Score=55.88 Aligned_cols=134 Identities=19% Similarity=0.317 Sum_probs=74.1
Q ss_pred ccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhh----------
Q 047219 300 LQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYY---------- 369 (567)
Q Consensus 300 l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~---------- 369 (567)
..+.|+-+++|.+ .+.+.-+++.|+.|||||.|.+.++.-+-.. +....+++.+.-.-.+.
T Consensus 12 ~gndelDkrLGGG------iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~---g~~v~yvsTe~T~refi~qm~sl~ydv 82 (235)
T COG2874 12 SGNDELDKRLGGG------IPVGSLILIEGDNGTGKSVLSQRFAYGFLMN---GYRVTYVSTELTVREFIKQMESLSYDV 82 (235)
T ss_pred CCcHHHHhhccCC------CccCeEEEEECCCCccHHHHHHHHHHHHHhC---CceEEEEEechhHHHHHHHHHhcCCCc
Confidence 4566666666522 3445568899999999999999998755322 33344443321111110
Q ss_pred -----------------------chhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc
Q 047219 370 -----------------------GESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF 426 (567)
Q Consensus 370 -----------------------G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~ 426 (567)
......+..+.+..+... ..+++||-+..+.... ....+.+++..+..+
T Consensus 83 ~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~-~dViIIDSls~~~~~~-------~~~~vl~fm~~~r~l 154 (235)
T COG2874 83 SDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWE-KDVIIIDSLSAFATYD-------SEDAVLNFMTFLRKL 154 (235)
T ss_pred hHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhhc-CCEEEEecccHHhhcc-------cHHHHHHHHHHHHHH
Confidence 112333444444444333 4799999998876432 111223333333333
Q ss_pred ccCCcEEEEEeeCCCCCCChHHHhcc
Q 047219 427 EQDKKVVVIAATNRKQDLDPALISRF 452 (567)
Q Consensus 427 ~~~~~viVIaaTN~~~~Ld~aL~sRf 452 (567)
...+++++ .|. ++..+++++..|+
T Consensus 155 ~d~gKvIi-lTv-hp~~l~e~~~~ri 178 (235)
T COG2874 155 SDLGKVII-LTV-HPSALDEDVLTRI 178 (235)
T ss_pred HhCCCEEE-EEe-ChhhcCHHHHHHH
Confidence 33444443 344 4788898888765
No 371
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.59 E-value=0.007 Score=55.39 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=25.5
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
.+...++|.|+.|+|||+++|.+++.++.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 45667999999999999999999999853
No 372
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.59 E-value=0.0024 Score=60.85 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+-++|.|+||+||||+|+.+++.+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568999999999999999999988
No 373
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.59 E-value=0.013 Score=56.16 Aligned_cols=29 Identities=31% Similarity=0.485 Sum_probs=25.3
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+...+.|.||+|+|||||++.++....
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 45677889999999999999999998763
No 374
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.58 E-value=0.02 Score=56.66 Aligned_cols=41 Identities=29% Similarity=0.337 Sum_probs=29.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE 362 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~ 362 (567)
..+...+++.|+||+|||+++..++...-.. +.++.+++.+
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~e 53 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISLE 53 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 4566789999999999999999887654222 3445555543
No 375
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.58 E-value=0.0082 Score=62.73 Aligned_cols=35 Identities=31% Similarity=0.611 Sum_probs=30.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
..++..++|.|.||||||++++.++..+ +.+|+.+
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~L------g~~~id~ 164 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARL------GVPFVEL 164 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEeH
Confidence 5677899999999999999999999999 6677743
No 376
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.58 E-value=0.015 Score=54.24 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=25.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+...+.|.|++|+|||+++++|+....
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46677899999999999999999998764
No 377
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.57 E-value=0.0068 Score=60.09 Aligned_cols=42 Identities=36% Similarity=0.392 Sum_probs=31.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEV 363 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~ 363 (567)
...+..+++.|+||+|||+++..++...... +-++++++.+.
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~e~ 58 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTTEE 58 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEccC
Confidence 5667889999999999999999887654222 44567776644
No 378
>PRK04328 hypothetical protein; Provisional
Probab=96.56 E-value=0.021 Score=57.80 Aligned_cols=40 Identities=35% Similarity=0.504 Sum_probs=28.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
..++..+|++|+||||||+++..++.+.... +-++++++.
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis~ 59 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVAL 59 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEEe
Confidence 4567789999999999999998876653221 344555554
No 379
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.55 E-value=0.0085 Score=56.93 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV 364 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l 364 (567)
..+.-++|.|++|+||||+|+.+++.+... +...+.++...+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~---~~~~~~~~~d~~ 46 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLK---YSNVIYLDGDEL 46 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEecHHH
Confidence 466789999999999999999999998432 233455555443
No 380
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.51 E-value=0.0077 Score=66.84 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=57.2
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCe
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPL 356 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~ 356 (567)
.++++++-.++..+.++.++. .+..-++++||+|+||||+..++.+++... +.++
T Consensus 219 ~~l~~Lg~~~~~~~~l~~~~~----------------------~~~GlilitGptGSGKTTtL~a~L~~l~~~---~~~i 273 (486)
T TIGR02533 219 LDLETLGMSPELLSRFERLIR----------------------RPHGIILVTGPTGSGKTTTLYAALSRLNTP---ERNI 273 (486)
T ss_pred CCHHHcCCCHHHHHHHHHHHh----------------------cCCCEEEEEcCCCCCHHHHHHHHHhccCCC---CCcE
Confidence 567788767777777766552 223357899999999999999888877532 2334
Q ss_pred EEechhh------HHhhhhc-hhHHHHHHHHHHHhcCCCCcEEEEcCcch
Q 047219 357 MYVPLEV------VMSKYYG-ESERLLGKVFSLANELPNGAIIFLDEVDS 399 (567)
Q Consensus 357 ~~i~~~~------l~s~~~G-~~~~~l~~~f~~A~~~a~~~ILfIDEID~ 399 (567)
+++..+- +....+. ............+.++. +.+|++.||-.
T Consensus 274 iTiEDpvE~~~~~~~q~~v~~~~g~~f~~~lr~~LR~d-PDvI~vGEiRd 322 (486)
T TIGR02533 274 LTVEDPVEYQIEGIGQIQVNPKIGLTFAAGLRAILRQD-PDIIMVGEIRD 322 (486)
T ss_pred EEEcCCeeeecCCCceEEEccccCccHHHHHHHHHhcC-CCEEEEeCCCC
Confidence 4332210 0000000 11112333444445555 48999999965
No 381
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.51 E-value=0.0019 Score=57.22 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=20.7
Q ss_pred EEeeCCCCCcHHHHHHHHHHHh
Q 047219 325 VLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l 346 (567)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999986
No 382
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.51 E-value=0.012 Score=56.16 Aligned_cols=22 Identities=27% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEeeCCCCCcHHHHHHHHHHHh
Q 047219 325 VLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l 346 (567)
+|+.|++|+|||++|..++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~ 23 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL 23 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999998874
No 383
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.50 E-value=0.0043 Score=59.78 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=25.0
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.....++|.||+|+||||++++++....
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567899999999999999999998875
No 384
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.47 E-value=0.0093 Score=59.45 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=28.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
..+..-++|.|+||+|||+++..++....... +.++.+++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 56677899999999999999998876652210 334555553
No 385
>PRK13948 shikimate kinase; Provisional
Probab=96.46 E-value=0.0056 Score=59.09 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=34.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhc
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYG 370 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G 370 (567)
..++..++|.|.+|+|||++++.+++.+ +.+|+..+ .+..+.+|
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~l------g~~~iD~D--~~ie~~~g 50 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRAL------MLHFIDTD--RYIERVTG 50 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEECC--HHHHHHHh
Confidence 3567899999999999999999999999 66676544 44444444
No 386
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.45 E-value=0.0082 Score=58.08 Aligned_cols=27 Identities=15% Similarity=0.393 Sum_probs=23.8
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.++-++|.||+|+|||+|++.+.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 467799999999999999999988763
No 387
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.45 E-value=0.017 Score=56.37 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.3
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~ 344 (567)
...+.-++|+||.|+|||++.+.|+.
T Consensus 26 l~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 26 LGSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred EcCCeEEEEECCCCCccHHHHHHHHH
Confidence 34456799999999999999999993
No 388
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.44 E-value=0.0092 Score=61.62 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=28.7
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSK 367 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~ 367 (567)
.-++|.|+|||||||+|+.+++.+. ++..++...+...
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-------~~~~l~~D~~r~~ 40 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-------KAVNVNRDDLRQS 40 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-------CCEEEeccHHHHH
Confidence 4588999999999999999999872 2455555555443
No 389
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.42 E-value=0.019 Score=63.78 Aligned_cols=80 Identities=23% Similarity=0.186 Sum_probs=52.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhh------ch---------------------
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYY------GE--------------------- 371 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~------G~--------------------- 371 (567)
..++..+|+.||||+|||+|+-.++...... +-++++++.++-...+. |-
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~---ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACAN---KERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccC
Confidence 5667789999999999999999888876332 44567776554322211 10
Q ss_pred -hHHHHHHHHHHHhcCCCCcEEEEcCcchhhh
Q 047219 372 -SERLLGKVFSLANELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 372 -~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~ 402 (567)
.+..+..+.+...... +.+++||-+..+..
T Consensus 337 ~~~~~~~~i~~~i~~~~-~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFK-PARIAIDSLSALAR 367 (484)
T ss_pred ChHHHHHHHHHHHHHcC-CCEEEEcCHHHHHH
Confidence 1334455555555544 47999999988753
No 390
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.025 Score=53.52 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=26.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++..+.|.||+|+|||+|.+.|+....
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 56788899999999999999999998864
No 391
>PRK06217 hypothetical protein; Validated
Probab=96.41 E-value=0.0032 Score=60.45 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=21.9
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.|+|.|.||+||||+|++|++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999998
No 392
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.41 E-value=0.019 Score=59.92 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=31.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCC---CCCCcCeEEechhh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAM---PWQGVPLMYVPLEV 363 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~---~~~~~~~~~i~~~~ 363 (567)
...+.-++|+||||+|||+++-.++...... ...+-.+++++.+.
T Consensus 92 i~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 92 IETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 3456668899999999999999998775321 00122677777654
No 393
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.41 E-value=0.0097 Score=58.08 Aligned_cols=38 Identities=26% Similarity=0.432 Sum_probs=26.6
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
|+-++|.||+|+||||.+-.+|..+... -..+-++..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D 38 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISAD 38 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEES
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCC
Confidence 5678999999999999888888877433 1133344444
No 394
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.40 E-value=0.0032 Score=57.35 Aligned_cols=30 Identities=30% Similarity=0.762 Sum_probs=25.7
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
+.|.|+||+|||++|+.++..+ +++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~------~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL------GLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh------CCceeccc
Confidence 6799999999999999999998 66666554
No 395
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.40 E-value=0.0089 Score=60.63 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=26.6
Q ss_pred cCCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 318 ESNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 318 ~~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.......+-|.|++||||||++|.|.....
T Consensus 35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 35 SIKEGETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred EEcCCCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 366778899999999999999999998775
No 396
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.40 E-value=0.015 Score=53.70 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=25.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++..+.|.||+|+|||||+++++....
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 56778899999999999999999998764
No 397
>PRK14527 adenylate kinase; Provisional
Probab=96.39 E-value=0.01 Score=57.26 Aligned_cols=28 Identities=39% Similarity=0.787 Sum_probs=24.8
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+.-+++.||||+||||+|+.+++.++
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567799999999999999999999883
No 398
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.38 E-value=0.011 Score=56.07 Aligned_cols=41 Identities=34% Similarity=0.509 Sum_probs=30.7
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV 364 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l 364 (567)
.+..+.|.|+||+|||++|+.++..+... +..+..++...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~---g~~v~~id~D~~ 43 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA---GYPVEVLDGDAV 43 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEcCccH
Confidence 45678999999999999999999988432 334555655443
No 399
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.13 Score=55.09 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=33.6
Q ss_pred ccceEEEecCCCHHHHHHHHHHHHHh--h----C-HHHHHHHHHhccCCCHHHHHHHHHH
Q 047219 451 RFDSMITFGLPDHENRQEIAAQYAKH--L----T-KAELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 451 Rf~~~I~i~~P~~~eR~eIL~~~~~~--~----~-~~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
-| ..|+++.++++|-.+++..+++. + + ++...++--. .+.+++.++.+|..
T Consensus 402 pf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fL-SngNP~l~~~lca~ 459 (461)
T KOG3928|consen 402 PF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFL-SNGNPSLMERLCAF 459 (461)
T ss_pred Cc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhh-cCCCHHHHHHHHHh
Confidence 45 46788899999999999988764 1 1 2233333333 36788877777753
No 400
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.37 E-value=0.0032 Score=58.02 Aligned_cols=22 Identities=23% Similarity=0.589 Sum_probs=20.8
Q ss_pred EEeeCCCCCcHHHHHHHHHHHh
Q 047219 325 VLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l 346 (567)
++|+|+||+||||+|+.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999987
No 401
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.36 E-value=0.085 Score=54.38 Aligned_cols=77 Identities=16% Similarity=0.322 Sum_probs=49.3
Q ss_pred CCce-EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech----------hhHHhhhhchhHHHHHHHHHHHhcCCCC
Q 047219 321 RPRA-VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL----------EVVMSKYYGESERLLGKVFSLANELPNG 389 (567)
Q Consensus 321 ~p~~-VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~----------~~l~s~~~G~~~~~l~~~f~~A~~~a~~ 389 (567)
.+++ ||++||+|+||||..-++-++++... ..+.+.+.. +.+..+-+|..-..+...++.|.+.. |
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN~~~--~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReD-P 199 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYINKHK--AKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALRED-P 199 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHhccC--CcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcC-C
Confidence 3444 77889999999999999999987542 122232221 22333445555455555566666665 4
Q ss_pred cEEEEcCcchh
Q 047219 390 AIIFLDEVDSF 400 (567)
Q Consensus 390 ~ILfIDEID~L 400 (567)
.||++=|+-.+
T Consensus 200 DVIlvGEmRD~ 210 (353)
T COG2805 200 DVILVGEMRDL 210 (353)
T ss_pred CEEEEeccccH
Confidence 89999998654
No 402
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.36 E-value=0.0055 Score=62.22 Aligned_cols=45 Identities=38% Similarity=0.533 Sum_probs=36.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS 366 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s 366 (567)
......+|++|+||||||+++..++...... +-+|++++.++-..
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~---ge~vlyvs~~e~~~ 64 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE---GEPVLYVSTEESPE 64 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc---CCcEEEEEecCCHH
Confidence 4667889999999999999999888877554 67788888765444
No 403
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=96.36 E-value=0.077 Score=62.19 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=21.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHH
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~ 345 (567)
..++|+||.|+|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 67999999999999999999876
No 404
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.35 E-value=0.011 Score=54.85 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=27.2
Q ss_pred eeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh
Q 047219 327 FEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY 368 (567)
Q Consensus 327 L~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~ 368 (567)
|.||||+|||++|+.||+.+ .+..++..++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~--------~~~~is~~~llr~~ 34 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY--------GLVHISVGDLLREE 34 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH--------TSEEEEHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc--------CcceechHHHHHHH
Confidence 57999999999999999988 35667766655543
No 405
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=96.35 E-value=0.017 Score=61.41 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=29.0
Q ss_pred ccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 315 CKFESNRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 315 ~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
.++....+..+|+-|.||||||++|--+-+.+..
T Consensus 3 ~FF~~~~G~TLLIKG~PGTGKTtfaLelL~~l~~ 36 (484)
T PF07088_consen 3 RFFTQEPGQTLLIKGEPGTGKTTFALELLNSLKD 36 (484)
T ss_pred hhhcCCCCcEEEEecCCCCCceeeehhhHHHHhc
Confidence 3455788999999999999999999988888754
No 406
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.35 E-value=0.066 Score=61.79 Aligned_cols=159 Identities=21% Similarity=0.243 Sum_probs=87.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhh-----HHhhhh----------ch------------
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEV-----VMSKYY----------GE------------ 371 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~-----l~s~~~----------G~------------ 371 (567)
....+-++|+-|.|.||||++-..+...... ..+..+.++.++ +.+.+. |+
T Consensus 34 ~~~~RL~li~APAGfGKttl~aq~~~~~~~~--~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~ 111 (894)
T COG2909 34 ANDYRLILISAPAGFGKTTLLAQWRELAADG--AAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYV 111 (894)
T ss_pred CCCceEEEEeCCCCCcHHHHHHHHHHhcCcc--cceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccc
Confidence 4556789999999999999999988733221 122233333322 121111 11
Q ss_pred -hHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC-CCCCChHHH
Q 047219 372 -SERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR-KQDLDPALI 449 (567)
Q Consensus 372 -~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~-~~~Ld~aL~ 449 (567)
....+..+|.+......+..||||+.|.+... +....+..|++. .+.++.+|.+|.. |.---..++
T Consensus 112 ~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~-------~l~~~l~fLl~~-----~P~~l~lvv~SR~rP~l~la~lR 179 (894)
T COG2909 112 SLESLLSSLLNELASYEGPLYLVLDDYHLISDP-------ALHEALRFLLKH-----APENLTLVVTSRSRPQLGLARLR 179 (894)
T ss_pred cHHHHHHHHHHHHHhhcCceEEEeccccccCcc-------cHHHHHHHHHHh-----CCCCeEEEEEeccCCCCccccee
Confidence 12245566666666665689999999998632 444444555553 4678888888854 321111111
Q ss_pred hccceEEEec----CCCHHHHHHHHHHHH-HhhCHHHHHHHHHhccCC
Q 047219 450 SRFDSMITFG----LPDHENRQEIAAQYA-KHLTKAELAELATATEEM 492 (567)
Q Consensus 450 sRf~~~I~i~----~P~~~eR~eIL~~~~-~~~~~~~l~~la~~t~g~ 492 (567)
=| +..++++ ..+.+|-.+.+.... ..+...++..+...++|.
T Consensus 180 lr-~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~~~~~~L~~~teGW 226 (894)
T COG2909 180 LR-DELLEIGSEELRFDTEEAAAFLNDRGSLPLDAADLKALYDRTEGW 226 (894)
T ss_pred eh-hhHHhcChHhhcCChHHHHHHHHHcCCCCCChHHHHHHHhhcccH
Confidence 00 0112221 225566666666544 234455666666666664
No 407
>PRK14531 adenylate kinase; Provisional
Probab=96.35 E-value=0.004 Score=59.79 Aligned_cols=24 Identities=38% Similarity=0.688 Sum_probs=22.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++++||||+||||+++.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999998
No 408
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.019 Score=61.37 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=24.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+..++|.||+|+||||++..+|..+.
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~ 231 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLL 231 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45577899999999999999999998763
No 409
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.33 E-value=0.0036 Score=60.05 Aligned_cols=22 Identities=41% Similarity=0.759 Sum_probs=21.1
Q ss_pred EEeeCCCCCcHHHHHHHHHHHh
Q 047219 325 VLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l 346 (567)
|+|.|+||+|||++|+.|++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999987
No 410
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.32 E-value=0.0048 Score=58.70 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=30.9
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhc
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYG 370 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G 370 (567)
.+++|.|++|+||||+.+++|+.+ +.+|+..+ .+..+..|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L------~~~F~D~D--~~Ie~~~g 42 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL------NLPFIDTD--QEIEKRTG 42 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc------CCCcccch--HHHHHHHC
Confidence 579999999999999999999999 66666544 44444333
No 411
>PRK14530 adenylate kinase; Provisional
Probab=96.31 E-value=0.0041 Score=61.31 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=22.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++|.|+||+||||+++.|++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999998
No 412
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.31 E-value=0.045 Score=51.93 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=25.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++..+.|.||+|+|||+|.+.|+....
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 46677899999999999999999998763
No 413
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.30 E-value=0.027 Score=57.74 Aligned_cols=92 Identities=21% Similarity=0.230 Sum_probs=56.3
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
-+++-.+++++.+....+ .| ..+..+.||.|.+|+||.+++|..+... +..++.+
T Consensus 8 m~lVlf~~ai~hi~ri~R-vL------------------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~------~~~~~~i 62 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISR-VL------------------SQPRGHALLVGVGGSGRQSLARLAAFIC------GYEVFQI 62 (268)
T ss_dssp ------HHHHHHHHHHHH-HH------------------CSTTEEEEEECTTTSCHHHHHHHHHHHT------TEEEE-T
T ss_pred cceeeHHHHHHHHHHHHH-HH------------------cCCCCCeEEecCCCccHHHHHHHHHHHh------ccceEEE
Confidence 456777788887766443 22 3455789999999999999999888877 5566666
Q ss_pred chhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 360 PLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 360 ~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
....-.+ ..+....++.++..|--...+.+++|+|-+
T Consensus 63 ~~~~~y~--~~~f~~dLk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 63 EITKGYS--IKDFKEDLKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp TTSTTTH--HHHHHHHHHHHHHHHHCS-S-EEEEEECCC
T ss_pred EeeCCcC--HHHHHHHHHHHHHHHhccCCCeEEEecCcc
Confidence 5432111 122345566777777655556788887754
No 414
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.30 E-value=0.031 Score=52.85 Aligned_cols=36 Identities=28% Similarity=0.389 Sum_probs=26.2
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE 362 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~ 362 (567)
-+++.|+||+|||++++.++..+... +..+..++++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~---g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK---GKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CCcEEEEEcC
Confidence 36889999999999999999876432 3344444443
No 415
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.28 E-value=0.029 Score=67.65 Aligned_cols=144 Identities=15% Similarity=0.203 Sum_probs=76.4
Q ss_pred CCCCceEEeeCCCCCcHHHH-HHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHh-------------
Q 047219 319 SNRPRAVLFEGPPGTGKTSC-ARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN------------- 384 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~L-AraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~------------- 384 (567)
.+..++++++||||+|||.+ .-++-+++ ...+++++.+.-.. ++..+..+-+...
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~------~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK 1559 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSEL------ITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPK 1559 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhh------heeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccC
Confidence 35678999999999999985 44555555 34455555432111 0111111111110
Q ss_pred cCCCCcEEEEcCcchhhhhhhhhhHHH---HHHHHHH--HHHhhcC-cccCCcEEEEEeeCCCCCC-----ChHHHhccc
Q 047219 385 ELPNGAIIFLDEVDSFAVARDSEMHEA---TRRILSV--LLRQIDG-FEQDKKVVVIAATNRKQDL-----DPALISRFD 453 (567)
Q Consensus 385 ~~a~~~ILfIDEID~L~~~~q~~l~~~---~~~vl~~--LL~~ld~-~~~~~~viVIaaTN~~~~L-----d~aL~sRf~ 453 (567)
..-...|||.|||+ |+....-....+ .+.++.. +...+.. ...-.++++.++||++.+. ...+.++-
T Consensus 1560 ~~vK~lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~- 1637 (3164)
T COG5245 1560 PVVKDLVLFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP- 1637 (3164)
T ss_pred cchhheEEEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-
Confidence 01113799999998 543321100000 0000000 1110000 0122578999999986543 34555544
Q ss_pred eEEEecCCCHHHHHHHHHHHHH
Q 047219 454 SMITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 454 ~~I~i~~P~~~eR~eIL~~~~~ 475 (567)
..+.+..|.......|.+.++.
T Consensus 1638 v~vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1638 VFVFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred eEEEecCcchhhHHHHHHHHHH
Confidence 5677889998888888887654
No 416
>PRK06547 hypothetical protein; Provisional
Probab=96.28 E-value=0.0046 Score=59.09 Aligned_cols=28 Identities=32% Similarity=0.497 Sum_probs=25.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+.-|++.|++|+|||++|+.+++.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567789999999999999999999987
No 417
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.28 E-value=0.1 Score=51.03 Aligned_cols=25 Identities=36% Similarity=0.501 Sum_probs=23.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+.-+++.|.||+|||++|+.++..+
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999999997
No 418
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.28 E-value=0.0052 Score=61.45 Aligned_cols=26 Identities=27% Similarity=0.636 Sum_probs=23.4
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.|..++|.||||+||||+|+.+++.+
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34559999999999999999999998
No 419
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.27 E-value=0.031 Score=54.61 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.9
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
....-++|.||+|+||||+.+.|+...
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 445778999999999999999998643
No 420
>PRK06696 uridine kinase; Validated
Probab=96.27 E-value=0.0065 Score=60.30 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=30.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEV 363 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~ 363 (567)
...+.-|.+.|++|+||||+|+.|+..++.. +.+.+.++..+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~---g~~v~~~~~Dd 60 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKR---GRPVIRASIDD 60 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecccc
Confidence 3456778999999999999999999998533 33445444433
No 421
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.27 E-value=0.011 Score=68.74 Aligned_cols=26 Identities=42% Similarity=0.703 Sum_probs=22.8
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
+-++|.|+||||||++++++.+.+..
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~ 364 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEE 364 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999887743
No 422
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.27 E-value=0.027 Score=54.18 Aligned_cols=39 Identities=15% Similarity=0.271 Sum_probs=28.8
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhch
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGE 371 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~ 371 (567)
+.|+|.+|+|||++++.+++.. ++ ..+++..+....+..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~------~~--~~i~~D~~~~~~~~~ 40 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKY------HF--PVIDADKIAHQVVEK 40 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhc------CC--eEEeCCHHHHHHHhc
Confidence 6799999999999999999875 33 345566665554433
No 423
>PLN02674 adenylate kinase
Probab=96.26 E-value=0.0099 Score=60.01 Aligned_cols=39 Identities=21% Similarity=0.443 Sum_probs=30.2
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS 366 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s 366 (567)
..+..++|.||||+||+|+|+.|++.+ + +..++..++..
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~------~--~~his~GdllR 67 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEY------C--LCHLATGDMLR 67 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHc------C--CcEEchhHHHH
Confidence 445679999999999999999999988 3 45555555543
No 424
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.26 E-value=0.031 Score=56.83 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=24.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+...++|.|+||+|||+++..++...
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5666789999999999999999888765
No 425
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.26 E-value=0.0037 Score=58.54 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEeeCCCCCcHHHHHHHHHHHh
Q 047219 325 VLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l 346 (567)
++|.||+|+||||+|+.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999998
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.26 E-value=0.02 Score=56.97 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.1
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~ 344 (567)
.....++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4556789999999999999999987
No 427
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.24 E-value=0.018 Score=67.28 Aligned_cols=77 Identities=18% Similarity=0.227 Sum_probs=44.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH----HhhhhchhHHHHHHHHH---HH-hcCCCCcEEE
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV----MSKYYGESERLLGKVFS---LA-NELPNGAIIF 393 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l----~s~~~G~~~~~l~~~f~---~A-~~~a~~~ILf 393 (567)
..-++|.|+||||||++++++...+... +..+..+..... +....|.....+..+.. .. ....+..+|+
T Consensus 368 ~~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llI 444 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLV 444 (744)
T ss_pred CCEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEE
Confidence 3467899999999999999998776433 334444433222 22222221122222211 10 1123458999
Q ss_pred EcCcchhh
Q 047219 394 LDEVDSFA 401 (567)
Q Consensus 394 IDEID~L~ 401 (567)
|||+..+.
T Consensus 445 vDEasMv~ 452 (744)
T TIGR02768 445 IDEAGMVG 452 (744)
T ss_pred EECcccCC
Confidence 99998875
No 428
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.23 E-value=0.038 Score=53.80 Aligned_cols=39 Identities=15% Similarity=0.297 Sum_probs=30.2
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhc
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYG 370 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G 370 (567)
-+.|+|++|+|||++++.+++.+ + +..+++..+....+.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~------g--~~~i~~D~~~~~~~~ 41 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQK------G--IPILDADIYAREALA 41 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh------C--CeEeeCcHHHHHHHh
Confidence 47899999999999999999876 3 444567666665553
No 429
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.23 E-value=0.059 Score=51.33 Aligned_cols=29 Identities=14% Similarity=0.343 Sum_probs=25.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++..+.|.||+|+|||+|++.++....
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 56778899999999999999999998764
No 430
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.22 E-value=0.017 Score=65.35 Aligned_cols=95 Identities=22% Similarity=0.308 Sum_probs=55.8
Q ss_pred ccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhch-------h
Q 047219 300 LQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGE-------S 372 (567)
Q Consensus 300 l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~-------~ 372 (567)
+..|+..+-|....... ...+..++|+|.||+||||+|++++..+.... +.++..++...+...+.|+ .
T Consensus 372 f~rpeV~~iL~~~~~~r--~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~--g~~~~~lD~D~vr~~l~ge~~f~~~er 447 (568)
T PRK05537 372 FSFPEVVAELRRTYPPR--HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMR--GRPVTLLDGDVVRKHLSSELGFSKEDR 447 (568)
T ss_pred hcHHHHHHHHHHHhccc--cCCCeEEEEECCCCChHHHHHHHHHHHhhhcc--CceEEEeCCcHHHHhccCCCCCCHHHH
Confidence 55566665554433332 34566799999999999999999999985411 3456777776665444332 1
Q ss_pred HHHHHHHHHHHh-cCCCCcEEEEcCcc
Q 047219 373 ERLLGKVFSLAN-ELPNGAIIFLDEVD 398 (567)
Q Consensus 373 ~~~l~~~f~~A~-~~a~~~ILfIDEID 398 (567)
+.....+-..+. ....++++++|-+-
T Consensus 448 ~~~~~~l~~~a~~v~~~Gg~vI~~~~~ 474 (568)
T PRK05537 448 DLNILRIGFVASEITKNGGIAICAPIA 474 (568)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 111222211222 12236788888773
No 431
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.22 E-value=0.03 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=21.9
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
....-++|.||.|+|||++.+.++..
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999999743
No 432
>PTZ00202 tuzin; Provisional
Probab=96.21 E-value=0.21 Score=54.42 Aligned_cols=52 Identities=21% Similarity=0.383 Sum_probs=41.3
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.+|.+.....|...+... ....+.-+.|.|++|||||++++.+...+.
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~------------------d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRL------------------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhcc------------------CCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4568899999999998877421 123455788999999999999999998773
No 433
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.20 E-value=0.012 Score=57.12 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=32.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVM 365 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~ 365 (567)
...+.-+.|.|++|+||||+|+.++..+... +...+.++...+.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~---~~~~~~ld~d~~~ 64 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHEL---GVSTYLLDGDNVR 64 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhC---CCCEEEEcCEeHH
Confidence 3567789999999999999999999987432 3345666654443
No 434
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.20 E-value=0.027 Score=56.30 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=24.7
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+..+=|.||+|||||||+|+++...
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 5677788899999999999999999765
No 435
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.0043 Score=58.18 Aligned_cols=28 Identities=39% Similarity=0.710 Sum_probs=24.4
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEE
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMY 358 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~ 358 (567)
+-+.|||||||||+|+.||+.+ ++++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~------gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHL------GLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHh------CCceee
Confidence 5688999999999999999999 666664
No 436
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.19 E-value=0.034 Score=62.56 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=26.8
Q ss_pred cCCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 318 ESNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 318 ~~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+++..+|+.||+|||||+|.|+||..-+
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGLWP 444 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGLWP 444 (604)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHhccCc
Confidence 367889999999999999999999998764
No 437
>PF13245 AAA_19: Part of AAA domain
Probab=96.19 E-value=0.005 Score=50.71 Aligned_cols=24 Identities=46% Similarity=0.682 Sum_probs=17.4
Q ss_pred ceEEeeCCCCCcHH-HHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKT-SCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT-~LAraIA~~l 346 (567)
.-+++.|||||||| ++++.++...
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34556999999999 5566666555
No 438
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.0066 Score=58.38 Aligned_cols=23 Identities=39% Similarity=0.793 Sum_probs=21.6
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.++|.||||+||||+|+.|++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 439
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.15 E-value=0.011 Score=63.22 Aligned_cols=75 Identities=19% Similarity=0.129 Sum_probs=43.6
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh-hH-----------HhhhhchhHHHHHHHHHHHhcCCCCc
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE-VV-----------MSKYYGESERLLGKVFSLANELPNGA 390 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~-~l-----------~s~~~G~~~~~l~~~f~~A~~~a~~~ 390 (567)
..+|++||+|+||||+++++.+++..... ....+.+..+ ++ ...-+|.....+...+..+.+.. +.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~-~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~-PD 227 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYP-DRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRA-PK 227 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCC-CceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccC-CC
Confidence 46899999999999999999988742110 1122332211 10 01111221123344555555665 58
Q ss_pred EEEEcCcch
Q 047219 391 IIFLDEVDS 399 (567)
Q Consensus 391 ILfIDEID~ 399 (567)
+|++.|+-.
T Consensus 228 ~I~vGEiRd 236 (372)
T TIGR02525 228 IIGVGEIRD 236 (372)
T ss_pred EEeeCCCCC
Confidence 999999965
No 440
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.15 E-value=0.006 Score=57.57 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=30.3
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhc
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYG 370 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G 370 (567)
..++|.|.+|+|||++++.+|+.+ +.+++.. ..+....+|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l------g~~~~d~--D~~~~~~~g 42 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL------GYRFVDT--DQWLQSTSN 42 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh------CCCEEEc--cHHHHHHhC
Confidence 468999999999999999999998 6666543 444444433
No 441
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.15 E-value=0.022 Score=59.61 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=31.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCC---CCCCcCeEEechhh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAM---PWQGVPLMYVPLEV 363 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~---~~~~~~~~~i~~~~ 363 (567)
...+.-++|+||||||||+++..++...... ...+..+++++.+.
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 4556778899999999999999998764221 01123577777654
No 442
>PRK10436 hypothetical protein; Provisional
Probab=96.15 E-value=0.015 Score=64.01 Aligned_cols=97 Identities=13% Similarity=0.178 Sum_probs=58.6
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCe
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPL 356 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~ 356 (567)
.++++++-.+...+.+++++. .+..-+|++||+|+||||+..++.+++... ..++
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~----------------------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~---~~~i 249 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQ----------------------QPQGLILVTGPTGSGKTVTLYSALQTLNTA---QINI 249 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHH----------------------hcCCeEEEECCCCCChHHHHHHHHHhhCCC---CCEE
Confidence 467888777777777776553 344568999999999999998888777543 2333
Q ss_pred EEechh-hH-----Hhhhhc-hhHHHHHHHHHHHhcCCCCcEEEEcCcch
Q 047219 357 MYVPLE-VV-----MSKYYG-ESERLLGKVFSLANELPNGAIIFLDEVDS 399 (567)
Q Consensus 357 ~~i~~~-~l-----~s~~~G-~~~~~l~~~f~~A~~~a~~~ILfIDEID~ 399 (567)
+.+..+ ++ ...-++ .....+...+..+.++. +.+|++.||-.
T Consensus 250 ~TiEDPvE~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~d-PDvI~vGEIRD 298 (462)
T PRK10436 250 CSVEDPVEIPLAGINQTQIHPKAGLTFQRVLRALLRQD-PDVIMVGEIRD 298 (462)
T ss_pred EEecCCccccCCCcceEeeCCccCcCHHHHHHHHhcCC-CCEEEECCCCC
Confidence 333321 00 000011 11122344455555565 48999999965
No 443
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=96.14 E-value=0.15 Score=60.00 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
.+.++|+||.+.|||++.+.++-.
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~ 350 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLA 350 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHH
Confidence 456899999999999999999754
No 444
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.14 E-value=0.071 Score=54.73 Aligned_cols=30 Identities=37% Similarity=0.616 Sum_probs=25.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
...++.++|.||+|+||||++..+|..+..
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~ 98 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKK 98 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 345678889999999999999999987743
No 445
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.14 E-value=0.0051 Score=49.46 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEeeCCCCCcHHHHHHHHHHHh
Q 047219 325 VLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l 346 (567)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 446
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.14 E-value=0.0034 Score=65.35 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=44.2
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh-hHHh---h----hhchhHHHHHHHHHHHhcCCCCcEE
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE-VVMS---K----YYGESERLLGKVFSLANELPNGAII 392 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~-~l~s---~----~~G~~~~~l~~~f~~A~~~a~~~IL 392 (567)
...++++.|++|+||||+++++.+.+...+- ...++.+... ++.- . ..+.....+..++..+.+.. +..|
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~-~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~-pD~i 208 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDP-TDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLR-PDRI 208 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCC-CceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCC-CCEE
Confidence 3468999999999999999999988743100 1112222111 1000 0 00111113455666666666 4899
Q ss_pred EEcCcch
Q 047219 393 FLDEVDS 399 (567)
Q Consensus 393 fIDEID~ 399 (567)
++.|+-.
T Consensus 209 ivGEiR~ 215 (299)
T TIGR02782 209 IVGEVRG 215 (299)
T ss_pred EEeccCC
Confidence 9999964
No 447
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.13 E-value=0.015 Score=60.62 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=64.3
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
....+-++|+|+.|+|||++.+.|...++.. ...+..+..... ++.. -|..+.-.. .-+++.||++
T Consensus 73 ~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~------~~~~~~~~~~~~-~~~~------~f~~a~l~g-k~l~~~~E~~ 138 (304)
T TIGR01613 73 YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDY------ATTAVASLKMNE-FQEH------RFGLARLEG-KRAVIGDEVQ 138 (304)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHhChh------hccCCcchhhhh-ccCC------CchhhhhcC-CEEEEecCCC
Confidence 3456779999999999999999998887432 222122222221 1110 122222222 3688899987
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHhhcCc----------ccCCcEEEEEeeCCCCC---CChHHHhccceEEEec
Q 047219 399 SFAVARDSEMHEATRRILSVLLRQIDGF----------EQDKKVVVIAATNRKQD---LDPALISRFDSMITFG 459 (567)
Q Consensus 399 ~L~~~~q~~l~~~~~~vl~~LL~~ld~~----------~~~~~viVIaaTN~~~~---Ld~aL~sRf~~~I~i~ 459 (567)
.-... . ...+..+. ..|.+ .......+|.+||..-. -+.++.+|+ .+|.|+
T Consensus 139 ~~~~~-~-------~~~lK~lt-~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~~RR~-~vi~f~ 202 (304)
T TIGR01613 139 KGYRD-D-------ESTFKSLT-GGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGIKRRL-RIIPFT 202 (304)
T ss_pred CCccc-c-------HHhhhhhh-cCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhheeeE-EEEecc
Confidence 42100 0 01112221 11111 22345778889987444 457899999 788874
No 448
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.13 E-value=0.3 Score=51.10 Aligned_cols=101 Identities=16% Similarity=0.201 Sum_probs=55.9
Q ss_pred HHHHHHHHhcCC--CCcEEEEcCcchhhhhhhhh------hHHHHHHHHHHHHHhhcCcc--cCCcEE-EEEeeCC---C
Q 047219 376 LGKVFSLANELP--NGAIIFLDEVDSFAVARDSE------MHEATRRILSVLLRQIDGFE--QDKKVV-VIAATNR---K 441 (567)
Q Consensus 376 l~~~f~~A~~~a--~~~ILfIDEID~L~~~~q~~------l~~~~~~vl~~LL~~ld~~~--~~~~vi-VIaaTN~---~ 441 (567)
+..++++..... .+.++.||++..+.....-. .....-.+...|+..+.+.. .++.++ .+++|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 455566655543 35788899999997653211 11222234455555533322 223332 2455432 2
Q ss_pred C--CCChHHHhccc---------------------eEEEecCCCHHHHHHHHHHHHHh
Q 047219 442 Q--DLDPALISRFD---------------------SMITFGLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 442 ~--~Ld~aL~sRf~---------------------~~I~i~~P~~~eR~eIL~~~~~~ 476 (567)
. .++.+|..+-. ..++++..+.+|-..+++.+.+.
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~ 279 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADS 279 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 2 45555554321 16788888999998988887653
No 449
>PRK13764 ATPase; Provisional
Probab=96.13 E-value=0.01 Score=67.14 Aligned_cols=29 Identities=31% Similarity=0.622 Sum_probs=25.4
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
....++|++||||+||||+++++++.+..
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34578999999999999999999998864
No 450
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.12 E-value=0.024 Score=62.13 Aligned_cols=100 Identities=11% Similarity=0.116 Sum_probs=60.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
...++++++......+.+.+.+. .+..-+|++||+|+|||+...++.++++.. ..
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~----------------------~p~GliLvTGPTGSGKTTTLY~~L~~ln~~---~~ 287 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLN----------------------RPQGLILVTGPTGSGKTTTLYAALSELNTP---ER 287 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHh----------------------CCCeEEEEeCCCCCCHHHHHHHHHHHhcCC---Cc
Confidence 34678888888888888877663 344457788999999999999999998654 33
Q ss_pred CeEEechh------hHHhhhhch-hHHHHHHHHHHHhcCCCCcEEEEcCcchh
Q 047219 355 PLMYVPLE------VVMSKYYGE-SERLLGKVFSLANELPNGAIIFLDEVDSF 400 (567)
Q Consensus 355 ~~~~i~~~------~l~s~~~G~-~~~~l~~~f~~A~~~a~~~ILfIDEID~L 400 (567)
+++.+.-+ .+..--+.. ..-.+...++...++. |.||++.||-..
T Consensus 288 nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqD-PDvImVGEIRD~ 339 (500)
T COG2804 288 NIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQD-PDVIMVGEIRDL 339 (500)
T ss_pred eEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccC-CCeEEEeccCCH
Confidence 33333321 010000000 0001122233333454 599999999764
No 451
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.11 E-value=0.0044 Score=58.74 Aligned_cols=30 Identities=23% Similarity=0.572 Sum_probs=25.2
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
.++++|.|||||||+++.++ .+ +.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l------g~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL------GYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh------CCceeeHH
Confidence 47899999999999999999 77 66676654
No 452
>PRK14528 adenylate kinase; Provisional
Probab=96.11 E-value=0.0061 Score=58.85 Aligned_cols=24 Identities=33% Similarity=0.872 Sum_probs=22.2
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+.+++.||||+|||++|+.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999988
No 453
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.05 Score=53.03 Aligned_cols=85 Identities=19% Similarity=0.191 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccce
Q 047219 375 LLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDS 454 (567)
Q Consensus 375 ~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~ 454 (567)
.++.+.+.+...+..+-++|+++|.|.. ...+.||+.++ +++.++++|..|+.+..+.|.++|||..
T Consensus 41 ~iReii~~~~~~~~~~k~iI~~a~~l~~-----------~A~NaLLK~LE--EPp~~~~fiL~t~~~~~llpTI~SRc~~ 107 (206)
T PRK08485 41 DAKEVIAEAYIAESEEKIIVIAAPSYGI-----------EAQNALLKILE--EPPKNICFIIVAKSKNLLLPTIRSRLII 107 (206)
T ss_pred HHHHHHHHHhhCCCCcEEEEEchHhhCH-----------HHHHHHHHHhc--CCCCCeEEEEEeCChHhCchHHHhhhee
Confidence 4455555544333345567889998863 35588899888 4788999999999999999999999942
Q ss_pred ------------EEEecCCCHHHHHHHHHH
Q 047219 455 ------------MITFGLPDHENRQEIAAQ 472 (567)
Q Consensus 455 ------------~I~i~~P~~~eR~eIL~~ 472 (567)
.+.+...+.++..+.++.
T Consensus 108 ~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 108 EKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHH
Confidence 366777788887777766
No 454
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.09 E-value=0.0043 Score=60.56 Aligned_cols=23 Identities=48% Similarity=0.749 Sum_probs=17.4
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
-.+++||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48899999999997776666665
No 455
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.08 E-value=0.013 Score=72.66 Aligned_cols=131 Identities=25% Similarity=0.351 Sum_probs=82.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh--hhhc----h----hHHHHHHHHHHHhcCCCCcE
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS--KYYG----E----SERLLGKVFSLANELPNGAI 391 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s--~~~G----~----~~~~l~~~f~~A~~~a~~~I 391 (567)
-.++||.||.|+|||.+++.+|... +.+++.++..+.+. +|.| . ..-+-..+...++ +++.
T Consensus 440 ~~pillqG~tssGKtsii~~la~~~------g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr---~G~~ 510 (1856)
T KOG1808|consen 440 KFPILLQGPTSSGKTSIIKELARAT------GKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALR---NGDW 510 (1856)
T ss_pred CCCeEEecCcCcCchhHHHHHHHHh------ccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHH---hCCE
Confidence 3589999999999999999999999 66677776543322 3333 1 1111122333333 3789
Q ss_pred EEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcC------------cccCCcEEEEEeeCCCCC------CChHHHhccc
Q 047219 392 IFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG------------FEQDKKVVVIAATNRKQD------LDPALISRFD 453 (567)
Q Consensus 392 LfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~------------~~~~~~viVIaaTN~~~~------Ld~aL~sRf~ 453 (567)
+|+||++.-... ++..|.+.++. +....++++++|-|.+.. +..+|++||
T Consensus 511 ~vlD~lnla~~d-----------vL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~rf- 578 (1856)
T KOG1808|consen 511 IVLDELNLAPHD-----------VLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNRF- 578 (1856)
T ss_pred EEeccccccchH-----------HHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhcccccc-
Confidence 999999865422 22333333332 133456777888887643 567788888
Q ss_pred eEEEecCCCHHHHHHHHHHH
Q 047219 454 SMITFGLPDHENRQEIAAQY 473 (567)
Q Consensus 454 ~~I~i~~P~~~eR~eIL~~~ 473 (567)
..++|..-+.++..+|+...
T Consensus 579 ~e~~f~~~~e~e~~~i~~~~ 598 (1856)
T KOG1808|consen 579 IELHFDDIGEEELEEILEHR 598 (1856)
T ss_pred hhhhhhhcCchhhhhhhccc
Confidence 66677655666666666543
No 456
>PRK13946 shikimate kinase; Provisional
Probab=96.08 E-value=0.0059 Score=58.74 Aligned_cols=34 Identities=29% Similarity=0.540 Sum_probs=28.9
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
.++.|+|.|.+|+|||++++.+++.+ +.+|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~L------g~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATML------GLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc------CCCeECcC
Confidence 45789999999999999999999999 66666544
No 457
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.08 E-value=0.012 Score=57.72 Aligned_cols=133 Identities=18% Similarity=0.261 Sum_probs=59.5
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh-hchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY-YGESERLLGKVFSLANELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~-~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~ 402 (567)
-++|+||+|||||.+|-++|+.. +.+++..+.-.....+ .|.......++ ... -=++|||-.--.+
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~------g~pvI~~Driq~y~~l~v~Sgrp~~~el-----~~~--~RiyL~~r~l~~G 69 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKT------GAPVISLDRIQCYPELSVGSGRPTPSEL-----KGT--RRIYLDDRPLSDG 69 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--------EEEEE-SGGG-GGGTTTTT---SGGG-----TT---EEEES----GGG-
T ss_pred EEEEECCCCCChhHHHHHHHHHh------CCCEEEecceecccccccccCCCCHHHH-----ccc--ceeeeccccccCC
Confidence 46899999999999999999999 7788887765554433 22221111111 111 2377886543222
Q ss_pred hhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHh-----ccce-EEEecCCCHHHHHHHHHHHHHh
Q 047219 403 ARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALIS-----RFDS-MITFGLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 403 ~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~s-----Rf~~-~I~i~~P~~~eR~eIL~~~~~~ 476 (567)
... ..+....|+..++.+...+.+++=+-+.. .+..=..+ .|.. +..+++|+.+.-..-.+...++
T Consensus 70 ~i~------a~ea~~~Li~~v~~~~~~~~~IlEGGSIS--Ll~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ 141 (233)
T PF01745_consen 70 IIN------AEEAHERLISEVNSYSAHGGLILEGGSIS--LLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQ 141 (233)
T ss_dssp S--------HHHHHHHHHHHHHTTTTSSEEEEEE--HH--HHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHH
T ss_pred CcC------HHHHHHHHHHHHHhccccCceEEeCchHH--HHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHH
Confidence 211 12233445555555555445555444421 11111111 2322 4555778877766666666555
Q ss_pred h
Q 047219 477 L 477 (567)
Q Consensus 477 ~ 477 (567)
|
T Consensus 142 M 142 (233)
T PF01745_consen 142 M 142 (233)
T ss_dssp H
T ss_pred h
Confidence 3
No 458
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.07 E-value=0.0069 Score=57.75 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=27.5
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
...++|.|++|+|||++++.+++.+ +.+++..+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l------~~~~vd~D 36 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL------NMEFYDSD 36 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc------CCcEEECC
Confidence 4579999999999999999999998 55565544
No 459
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.07 E-value=0.012 Score=62.23 Aligned_cols=75 Identities=19% Similarity=0.223 Sum_probs=45.7
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech-hhHH------------hh-hhchhHHHHHHHHHHHhc
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL-EVVM------------SK-YYGESERLLGKVFSLANE 385 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~-~~l~------------s~-~~G~~~~~l~~~f~~A~~ 385 (567)
....++++.|++|+||||+++++....+.. ..++.+.. .++. .+ -.|...-....++..+.+
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~----~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR 233 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAI----ERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLR 233 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCC----CeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhc
Confidence 346789999999999999999999988642 11111110 0000 00 001112234556666666
Q ss_pred CCCCcEEEEcCcch
Q 047219 386 LPNGAIIFLDEVDS 399 (567)
Q Consensus 386 ~a~~~ILfIDEID~ 399 (567)
..| ..|++.|+-.
T Consensus 234 ~~P-D~IivGEiR~ 246 (332)
T PRK13900 234 LRP-DRIIVGELRG 246 (332)
T ss_pred cCC-CeEEEEecCC
Confidence 664 8999999964
No 460
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.06 E-value=0.0061 Score=58.05 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=21.9
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.-++|.|+||+||||+++.+++.+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999987
No 461
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.06 E-value=0.038 Score=52.00 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=22.2
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.++..++.||.|+|||++.++++-.+
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999987654
No 462
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.05 E-value=0.018 Score=55.18 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=32.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVM 365 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~ 365 (567)
..++.-++|.|+||+|||++|+.++..+... +...+.++...+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~---~~~~~~l~~d~~r 58 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESK---GYRVYVLDGDNVR 58 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECChHHH
Confidence 4567789999999999999999999987432 3345666655443
No 463
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.05 E-value=0.047 Score=52.28 Aligned_cols=42 Identities=36% Similarity=0.647 Sum_probs=28.0
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCC-CCC------CCcCeEEechh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGA-MPW------QGVPLMYVPLE 362 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~-~~~------~~~~~~~i~~~ 362 (567)
...-++|.||||+|||+++-.++..+.. .+| ...++.+++.+
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E 79 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLE 79 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEecc
Confidence 3456899999999999999999887643 122 24567777654
No 464
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.04 E-value=0.0095 Score=58.53 Aligned_cols=24 Identities=42% Similarity=0.511 Sum_probs=19.1
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.-+.+.||.|||||++|-+.|.+.
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468899999999999999988765
No 465
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.03 E-value=0.017 Score=65.35 Aligned_cols=97 Identities=16% Similarity=0.130 Sum_probs=57.7
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCe
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPL 356 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~ 356 (567)
.++++++-.++..+.+.+++. .+...+|++||+|+||||+..++.+.++.. ..++
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~----------------------~~~Glilv~G~tGSGKTTtl~a~l~~~~~~---~~~i 347 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIH----------------------KPQGMVLVTGPTGSGKTVSLYTALNILNTE---EVNI 347 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHH----------------------hcCCeEEEECCCCCCHHHHHHHHHHhhCCC---CceE
Confidence 467777767776777766553 234568899999999999998888887532 2233
Q ss_pred EEechh------hHHhhhhc-hhHHHHHHHHHHHhcCCCCcEEEEcCcch
Q 047219 357 MYVPLE------VVMSKYYG-ESERLLGKVFSLANELPNGAIIFLDEVDS 399 (567)
Q Consensus 357 ~~i~~~------~l~s~~~G-~~~~~l~~~f~~A~~~a~~~ILfIDEID~ 399 (567)
+.+..+ .+...-+. .....+...+..+.++. +-+|++.||-.
T Consensus 348 ~tiEdpvE~~~~~~~q~~v~~~~g~~~~~~l~~~LR~d-PDvI~vGEiRd 396 (564)
T TIGR02538 348 STAEDPVEINLPGINQVNVNPKIGLTFAAALRSFLRQD-PDIIMVGEIRD 396 (564)
T ss_pred EEecCCceecCCCceEEEeccccCCCHHHHHHHHhccC-CCEEEeCCCCC
Confidence 332221 00000000 11112334455555565 48999999975
No 466
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.99 E-value=0.008 Score=63.13 Aligned_cols=77 Identities=17% Similarity=0.192 Sum_probs=43.6
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh-hHH---hh---hhchhHHHHHHHHHHHhcCCCCcEEE
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE-VVM---SK---YYGESERLLGKVFSLANELPNGAIIF 393 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~-~l~---s~---~~G~~~~~l~~~f~~A~~~a~~~ILf 393 (567)
...++++.|++|+|||+++++++......+- ...++.+... ++. .. +....+-....++..+.+.. +..|+
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~-~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~-PD~Ii 224 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDP-TERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMR-PDRIL 224 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCC-CceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCC-CCEEE
Confidence 4578999999999999999999987421000 0111111110 000 00 00011123455666666666 48999
Q ss_pred EcCcch
Q 047219 394 LDEVDS 399 (567)
Q Consensus 394 IDEID~ 399 (567)
+.|+-.
T Consensus 225 vGEiR~ 230 (319)
T PRK13894 225 VGEVRG 230 (319)
T ss_pred EeccCC
Confidence 999964
No 467
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.99 E-value=0.019 Score=59.31 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.3
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+..++|.||+|+||||++..++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999999877
No 468
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=95.99 E-value=0.064 Score=49.74 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=17.8
Q ss_pred CceEEeeCCCCCcHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVI 342 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraI 342 (567)
.+++++.||+|+|||+.+...
T Consensus 14 ~~~~li~aptGsGKT~~~~~~ 34 (169)
T PF00270_consen 14 GKNVLISAPTGSGKTLAYILP 34 (169)
T ss_dssp TSEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEECCCCCccHHHHHHH
Confidence 467999999999999988733
No 469
>PRK13808 adenylate kinase; Provisional
Probab=95.98 E-value=0.032 Score=58.76 Aligned_cols=23 Identities=35% Similarity=0.667 Sum_probs=21.6
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.|+|+||||+|||++++.|+..+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~y 24 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQY 24 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 470
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=95.97 E-value=0.14 Score=48.35 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=67.2
Q ss_pred eCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh
Q 047219 328 EGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE 407 (567)
Q Consensus 328 ~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~ 407 (567)
.+.+||||||++.++++.++. +.-+.-.++.++ ...+.+....+.+.+.. ..++|.|-=..+...|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-------wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~-~~vViaDRNNh~~reR--- 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-------WGHVQNDNITGK---RKPKFIKAVLELLAKDT-HPVVIADRNNHQKRER--- 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-------CCccccCCCCCC---CHHHHHHHHHHHHhhCC-CCEEEEeCCCchHHHH---
Confidence 478999999999999999841 223334444333 12233334444442222 4789998766654332
Q ss_pred hHHHHHHHHHHHHHhhc-CcccCCcEEEEEeeCCCCCCChHHHh--------ccce--EEEecCCCHHHHHHHHHHHHHh
Q 047219 408 MHEATRRILSVLLRQID-GFEQDKKVVVIAATNRKQDLDPALIS--------RFDS--MITFGLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 408 l~~~~~~vl~~LL~~ld-~~~~~~~viVIaaTN~~~~Ld~aL~s--------Rf~~--~I~i~~P~~~eR~eIL~~~~~~ 476 (567)
++++..+...-. .+....++.+||-.=..+.-.+.+++ |=|+ .|.....+...-..|+...++.
T Consensus 71 -----~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~r 145 (168)
T PF08303_consen 71 -----KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKR 145 (168)
T ss_pred -----HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHh
Confidence 222222222211 11234577888776333222233332 3333 4444444555666666665554
Q ss_pred h
Q 047219 477 L 477 (567)
Q Consensus 477 ~ 477 (567)
+
T Consensus 146 f 146 (168)
T PF08303_consen 146 F 146 (168)
T ss_pred c
Confidence 3
No 471
>PRK02496 adk adenylate kinase; Provisional
Probab=95.97 E-value=0.0067 Score=58.07 Aligned_cols=23 Identities=43% Similarity=0.795 Sum_probs=21.6
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.++|.||||+|||++|+.|+..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999988
No 472
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=95.97 E-value=0.053 Score=52.77 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=19.8
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.++|+.|.+|+|||++.+.+...+-
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~ 63 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLA 63 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHH
Confidence 3999999999999999998887763
No 473
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.96 E-value=0.034 Score=58.31 Aligned_cols=45 Identities=16% Similarity=0.014 Sum_probs=30.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCC---CCCCcCeEEechhh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAM---PWQGVPLMYVPLEV 363 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~---~~~~~~~~~i~~~~ 363 (567)
.....-+.|+||||+|||+++..++-..... ...+..++|++.+.
T Consensus 93 i~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 93 IESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 4556678899999999999998877533210 01134577777554
No 474
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.96 E-value=0.037 Score=64.02 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=25.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.+++..+-|.|++|||||||+|.+.....
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56677799999999999999999998763
No 475
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.95 E-value=0.075 Score=50.14 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=25.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++..+.|.||+|+|||+|++.++....
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56778899999999999999999998764
No 476
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.94 E-value=0.0098 Score=62.49 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=43.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech-hhHHh------hhhchhHHHHHHHHHHHhcCCCCcEEEE
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL-EVVMS------KYYGESERLLGKVFSLANELPNGAIIFL 394 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~-~~l~s------~~~G~~~~~l~~~f~~A~~~a~~~ILfI 394 (567)
..++++.|++|+||||+++++.......+. +...+.+.. .++.- .+.....-....++..+.+.. +..|++
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~-~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~-PD~Iiv 221 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAP-EDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLR-PDRIIV 221 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCC-CceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCC-CCEEEE
Confidence 468999999999999999999988731100 111222221 11110 000111122445666666665 489999
Q ss_pred cCcc
Q 047219 395 DEVD 398 (567)
Q Consensus 395 DEID 398 (567)
.|+-
T Consensus 222 GEiR 225 (323)
T PRK13833 222 GEVR 225 (323)
T ss_pred eecC
Confidence 9995
No 477
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.94 E-value=0.023 Score=59.88 Aligned_cols=37 Identities=16% Similarity=0.123 Sum_probs=28.5
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV 364 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l 364 (567)
...+.|.|+||+|||||++.+++.+ +.+++.-.+.++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~------~~~~v~E~~R~~ 198 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVF------NTTSAWEYAREY 198 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh------CCCEEeehhHHH
Confidence 4579999999999999999999988 445544444333
No 478
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=95.88 E-value=0.07 Score=51.02 Aligned_cols=37 Identities=22% Similarity=0.547 Sum_probs=27.8
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhc
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYG 370 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G 370 (567)
+.|+|++|+||||+++.+++ + +++ .+++..+....+.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~------g~~--~i~~D~~~~~~~~ 38 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-L------GIP--VIDADKIAHEVYE 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-C------CCC--EEecCHHHHhhhh
Confidence 67999999999999999998 5 443 4555566555443
No 479
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.88 E-value=0.0075 Score=59.17 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=21.0
Q ss_pred EEeeCCCCCcHHHHHHHHHHHh
Q 047219 325 VLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l 346 (567)
++|.||||+||||+|+.|++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999987
No 480
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.88 E-value=0.016 Score=60.59 Aligned_cols=29 Identities=17% Similarity=0.431 Sum_probs=25.7
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.....++++.||+|+||||+++++...+.
T Consensus 141 v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 45568999999999999999999998875
No 481
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.85 E-value=0.035 Score=66.23 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=42.4
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh----hchhHHHHHHHHHHH---h-cCCCCcEEEEc
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY----YGESERLLGKVFSLA---N-ELPNGAIIFLD 395 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~----~G~~~~~l~~~f~~A---~-~~a~~~ILfID 395 (567)
-++|.|.+|||||++.+++...+... +..++.+..+....+- .|.....+..++... . ...+..+|+||
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~---G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVD 440 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAA---GYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVID 440 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEE
Confidence 56799999999999999887765432 3334433332222211 222223333332111 1 12235799999
Q ss_pred Ccchhh
Q 047219 396 EVDSFA 401 (567)
Q Consensus 396 EID~L~ 401 (567)
|+..+.
T Consensus 441 EASMv~ 446 (988)
T PRK13889 441 EAGMVG 446 (988)
T ss_pred CcccCC
Confidence 998775
No 482
>PLN02459 probable adenylate kinase
Probab=95.84 E-value=0.014 Score=59.43 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+..++|.||||+||+|+++.+++.+
T Consensus 26 ~~~~~~ii~~G~PGsGK~T~a~~la~~~ 53 (261)
T PLN02459 26 KGRNVNWVFLGCPGVGKGTYASRLSKLL 53 (261)
T ss_pred ccCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444568889999999999999999988
No 483
>PTZ00035 Rad51 protein; Provisional
Probab=95.83 E-value=0.051 Score=57.56 Aligned_cols=45 Identities=16% Similarity=0.054 Sum_probs=29.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCC---CCCCcCeEEechhh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAM---PWQGVPLMYVPLEV 363 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~---~~~~~~~~~i~~~~ 363 (567)
.....-+.|+||||+|||+++..++-..... .-.+..+++++.+.
T Consensus 115 i~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 115 IETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 4556668899999999999999988654310 00133566666543
No 484
>PRK00279 adk adenylate kinase; Reviewed
Probab=95.82 E-value=0.0091 Score=58.83 Aligned_cols=23 Identities=39% Similarity=0.751 Sum_probs=21.6
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.|+++|+||+||||+|+.||+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999988
No 485
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.81 E-value=0.073 Score=54.08 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=25.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+-|.||.|||||||.|+++..+.
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45667788999999999999999999764
No 486
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=95.81 E-value=0.32 Score=52.78 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=41.6
Q ss_pred CCCCcccc-cCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 275 SEISWENI-AGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 275 ~~~~~~dI-iG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
|....+.| +|.+..++.+.+.+... .......-++.|+-|+|||++.+.+.....
T Consensus 19 P~~Gl~~~~VGr~~e~~~l~~~l~~v------------------~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~ 74 (416)
T PF10923_consen 19 PRIGLDHIAVGREREIEALDRDLDRV------------------ADGGSSFKFIRGEYGSGKTFFLRLIRERAL 74 (416)
T ss_pred CcccCcceeechHHHHHHHHHHHHHH------------------hCCCCeEEEEEeCCCCcHHHHHHHHHHHHH
Confidence 44555555 79999999998877543 134455678899999999999999987653
No 487
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.78 E-value=0.036 Score=52.96 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.7
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++..+.|.||+|+|||+|++.|+....
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56778899999999999999999998763
No 488
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.77 E-value=0.042 Score=56.36 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=45.4
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH-------Hhhhh---------chhHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV-------MSKYY---------GESERLLGKVFSLAN 384 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l-------~s~~~---------G~~~~~l~~~f~~A~ 384 (567)
++..++|.|++|+|||++++.++..+... +.....+++... ...+. ......+...+..+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~---~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH
Confidence 55789999999999999999998876321 122322332111 01111 112333444444444
Q ss_pred cCCCCcEEEEcCcchhh
Q 047219 385 ELPNGAIIFLDEVDSFA 401 (567)
Q Consensus 385 ~~a~~~ILfIDEID~L~ 401 (567)
......+++||-.....
T Consensus 151 ~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 151 EEARVDYILIDTAGKNY 167 (270)
T ss_pred hcCCCCEEEEECCCCCc
Confidence 33335789999988764
No 489
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.76 E-value=0.21 Score=49.97 Aligned_cols=39 Identities=26% Similarity=0.233 Sum_probs=27.9
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCC-C--------CCCcCeEEechhh
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAM-P--------WQGVPLMYVPLEV 363 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~-~--------~~~~~~~~i~~~~ 363 (567)
-+|.||||+|||+|+-.+|...... + ..+.++++++.++
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed 51 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED 51 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC
Confidence 5799999999999999998765321 1 1244677777653
No 490
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.058 Score=60.01 Aligned_cols=27 Identities=30% Similarity=0.518 Sum_probs=23.4
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+..+.|.||+|+|||+++..|+..+
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 446788999999999999999998765
No 491
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.74 E-value=0.031 Score=51.19 Aligned_cols=23 Identities=22% Similarity=0.596 Sum_probs=20.8
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhC
Q 047219 325 VLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~ 347 (567)
++|.||+|+|||++++.+++...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 67899999999999999999854
No 492
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.74 E-value=0.035 Score=58.30 Aligned_cols=27 Identities=22% Similarity=0.119 Sum_probs=23.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
..+..-+.++||||+|||+++..++..
T Consensus 93 i~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 93 IETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred CCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 456677889999999999999998863
No 493
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.73 E-value=0.049 Score=57.78 Aligned_cols=45 Identities=16% Similarity=0.003 Sum_probs=29.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCC---CCCCcCeEEechhh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAM---PWQGVPLMYVPLEV 363 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~---~~~~~~~~~i~~~~ 363 (567)
.....-..|+||||||||+|+..++-..... .-.+..++|++.+.
T Consensus 123 i~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 123 IETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 4555668899999999999999887443210 00123567776643
No 494
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.71 E-value=0.012 Score=56.60 Aligned_cols=38 Identities=32% Similarity=0.505 Sum_probs=29.0
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHH
Q 047219 325 VLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVM 365 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~ 365 (567)
|.+.|+||+|||++|+.++..+... +.++..++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~---~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVN---GIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEEehhhcc
Confidence 6789999999999999999998533 3456666655544
No 495
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.16 Score=55.13 Aligned_cols=26 Identities=35% Similarity=0.658 Sum_probs=22.4
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+..++|.||+|+||||++..+|...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35568899999999999999999754
No 496
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=95.68 E-value=0.072 Score=53.52 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=54.6
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh---CCCCCCCcC----------eEEechhh-HHh--hhhchhHHHHHHHHHHHhc
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA---GAMPWQGVP----------LMYVPLEV-VMS--KYYGESERLLGKVFSLANE 385 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l---~~~~~~~~~----------~~~i~~~~-l~s--~~~G~~~~~l~~~f~~A~~ 385 (567)
.+.++|+||...|||++.|.|+... ....++... +..+...+ +.. ..|...-..+..+++.+.
T Consensus 43 ~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~- 121 (235)
T PF00488_consen 43 SRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNAT- 121 (235)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH---
T ss_pred eeEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcc-
Confidence 3679999999999999999998754 111111111 12222211 111 122233345556666544
Q ss_pred CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC
Q 047219 386 LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ 442 (567)
Q Consensus 386 ~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~ 442 (567)
+.++++|||+.+=....+. ......++..|.. ..+..+|.+|+..+
T Consensus 122 --~~sLvliDE~g~gT~~~eg--~ai~~aile~l~~-------~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 122 --EKSLVLIDELGRGTNPEEG--IAIAIAILEYLLE-------KSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHH--HHHHHHHHHHHHH-------TTT-EEEEEES-GG
T ss_pred --cceeeecccccCCCChhHH--HHHHHHHHHHHHH-------hccccEEEEeccch
Confidence 3689999999764322111 1112222222221 13567888888654
No 497
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.67 E-value=0.021 Score=60.18 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=41.8
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
+++.|+++.+.++.+.+...-+.- ....+-++|.||+|+|||++++.+.+.+..
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~---------------~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGL---------------EERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhcc---------------CccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 389999999999988765431111 234567889999999999999999998854
No 498
>PRK14526 adenylate kinase; Provisional
Probab=95.67 E-value=0.013 Score=57.85 Aligned_cols=23 Identities=39% Similarity=0.910 Sum_probs=21.4
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.++|.||||+||||+++.++..+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 499
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.66 E-value=0.085 Score=59.89 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=26.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+++..+.|.||+|+|||||++.+....
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6788899999999999999999999876
No 500
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.66 E-value=0.012 Score=58.06 Aligned_cols=21 Identities=24% Similarity=0.646 Sum_probs=19.4
Q ss_pred EEeeCCCCCcHHHHHHHHHHH
Q 047219 325 VLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~ 345 (567)
++++|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999988
Done!