Query 047219
Match_columns 567
No_of_seqs 565 out of 3751
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 15:33:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 2.2E-49 7.4E-54 452.3 13.7 368 111-514 36-428 (806)
2 3hu3_A Transitional endoplasmi 100.0 2.1E-43 7.2E-48 386.1 23.2 370 112-513 37-427 (489)
3 4b4t_J 26S protease regulatory 100.0 6.7E-41 2.3E-45 354.8 23.6 225 272-511 140-372 (405)
4 4b4t_I 26S protease regulatory 100.0 8.5E-40 2.9E-44 347.5 19.2 225 272-511 174-406 (437)
5 1ypw_A Transitional endoplasmi 100.0 6E-40 2.1E-44 378.7 18.7 365 112-512 37-426 (806)
6 4b4t_H 26S protease regulatory 100.0 3.5E-39 1.2E-43 345.8 23.0 225 272-511 201-433 (467)
7 4b4t_M 26S protease regulatory 100.0 2.5E-39 8.6E-44 347.1 21.7 225 272-511 173-405 (434)
8 4b4t_L 26S protease subunit RP 100.0 3.8E-39 1.3E-43 346.0 20.2 225 272-511 173-405 (437)
9 4b4t_K 26S protease regulatory 100.0 1.8E-38 6E-43 340.3 21.9 225 272-511 164-397 (428)
10 3cf2_A TER ATPase, transitiona 100.0 9.8E-37 3.4E-41 348.1 8.1 228 273-515 470-705 (806)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.9E-33 6.4E-38 292.1 24.1 227 273-514 5-236 (322)
12 3eie_A Vacuolar protein sortin 100.0 6.7E-33 2.3E-37 287.5 23.3 227 272-514 10-241 (322)
13 2qp9_X Vacuolar protein sortin 100.0 9.5E-32 3.3E-36 282.9 24.3 226 273-514 44-274 (355)
14 3cf0_A Transitional endoplasmi 100.0 1.7E-31 6E-36 274.4 21.1 227 273-514 8-242 (301)
15 2zan_A Vacuolar protein sortin 100.0 6.2E-31 2.1E-35 284.7 19.9 227 273-514 127-358 (444)
16 2x8a_A Nuclear valosin-contain 100.0 1.4E-30 4.9E-35 264.6 19.7 227 273-514 3-239 (274)
17 3d8b_A Fidgetin-like protein 1 100.0 2.7E-29 9.1E-34 264.3 24.1 222 274-511 78-305 (357)
18 3b9p_A CG5977-PA, isoform A; A 100.0 2.7E-29 9.4E-34 256.1 20.1 224 273-512 14-244 (297)
19 3vfd_A Spastin; ATPase, microt 100.0 3.6E-29 1.2E-33 266.0 21.0 224 273-512 108-337 (389)
20 3h4m_A Proteasome-activating n 100.0 8.7E-29 3E-33 250.7 22.1 224 273-511 10-241 (285)
21 2ce7_A Cell division protein F 100.0 8.5E-29 2.9E-33 269.1 21.9 221 274-510 10-238 (476)
22 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.4E-28 4.9E-33 245.3 19.4 220 275-510 1-231 (262)
23 1lv7_A FTSH; alpha/beta domain 100.0 2.4E-28 8.2E-33 244.4 20.7 222 273-510 5-234 (257)
24 1ixz_A ATP-dependent metallopr 99.9 5.6E-26 1.9E-30 226.8 23.3 222 273-510 9-238 (254)
25 2dhr_A FTSH; AAA+ protein, hex 99.9 6.4E-27 2.2E-31 255.7 16.0 219 275-509 26-252 (499)
26 1iy2_A ATP-dependent metallopr 99.9 1.3E-24 4.3E-29 220.3 25.2 222 273-510 33-262 (278)
27 2r62_A Cell division protease 99.9 1.9E-27 6.6E-32 238.9 1.4 220 273-508 4-233 (268)
28 1ypw_A Transitional endoplasmi 99.9 9.5E-28 3.3E-32 277.0 -3.4 226 273-513 470-703 (806)
29 3syl_A Protein CBBX; photosynt 99.9 1.6E-21 5.6E-26 199.2 18.2 221 280-514 31-268 (309)
30 1ojl_A Transcriptional regulat 99.9 7.9E-23 2.7E-27 210.5 7.2 245 280-566 2-295 (304)
31 3t15_A Ribulose bisphosphate c 99.9 6.5E-21 2.2E-25 195.1 21.2 171 319-499 33-222 (293)
32 3pfi_A Holliday junction ATP-d 99.8 8.8E-19 3E-23 181.5 23.9 191 274-507 23-233 (338)
33 1hqc_A RUVB; extended AAA-ATPa 99.8 1E-18 3.5E-23 179.4 20.9 189 275-505 7-215 (324)
34 2c9o_A RUVB-like 1; hexameric 99.8 1.4E-21 4.7E-26 212.1 -1.9 203 273-503 30-262 (456)
35 1ofh_A ATP-dependent HSL prote 99.8 6.9E-19 2.4E-23 179.0 18.2 216 280-508 15-273 (310)
36 3uk6_A RUVB-like 2; hexameric 99.8 3.3E-18 1.1E-22 178.9 21.2 203 273-509 37-311 (368)
37 4fcw_A Chaperone protein CLPB; 99.8 1E-18 3.5E-23 178.4 16.7 208 280-513 17-283 (311)
38 2bjv_A PSP operon transcriptio 99.8 2.2E-19 7.6E-24 180.0 10.1 191 277-505 3-237 (265)
39 3hws_A ATP-dependent CLP prote 99.8 4E-18 1.4E-22 179.0 18.7 220 281-512 16-326 (363)
40 3m6a_A ATP-dependent protease 99.8 4E-18 1.4E-22 188.8 16.9 209 275-514 76-321 (543)
41 3pxi_A Negative regulator of g 99.8 3E-18 1E-22 196.9 14.4 204 279-513 490-729 (758)
42 3u61_B DNA polymerase accessor 99.8 1.2E-17 4.3E-22 172.0 17.6 171 274-491 20-207 (324)
43 1d2n_A N-ethylmaleimide-sensit 99.8 6.3E-18 2.2E-22 170.2 14.4 202 278-503 31-244 (272)
44 1l8q_A Chromosomal replication 99.7 8.3E-17 2.8E-21 166.1 21.3 197 274-506 5-213 (324)
45 1jbk_A CLPB protein; beta barr 99.7 5.3E-18 1.8E-22 158.6 10.8 166 276-470 18-194 (195)
46 3pvs_A Replication-associated 99.7 4.7E-17 1.6E-21 176.0 18.4 182 274-506 20-220 (447)
47 1ny5_A Transcriptional regulat 99.7 1.6E-18 5.6E-23 184.1 6.5 198 279-505 136-352 (387)
48 1r6b_X CLPA protein; AAA+, N-t 99.7 3.8E-17 1.3E-21 187.6 18.0 205 280-516 458-724 (758)
49 1um8_A ATP-dependent CLP prote 99.7 6.7E-17 2.3E-21 170.4 18.4 226 280-511 21-342 (376)
50 3dzd_A Transcriptional regulat 99.7 1.3E-18 4.4E-23 183.8 4.6 200 280-505 129-343 (368)
51 1g8p_A Magnesium-chelatase 38 99.7 2.2E-17 7.6E-22 171.1 12.2 178 273-473 17-231 (350)
52 2chg_A Replication factor C sm 99.7 7.9E-16 2.7E-20 147.2 21.9 189 274-505 11-208 (226)
53 1g41_A Heat shock protein HSLU 99.7 1.7E-16 5.7E-21 170.6 18.3 220 280-512 15-411 (444)
54 3n70_A Transport activator; si 99.7 1.2E-17 4E-22 152.9 7.5 136 281-463 2-144 (145)
55 1qvr_A CLPB protein; coiled co 99.7 4.3E-17 1.5E-21 189.6 13.2 207 278-513 556-824 (854)
56 3pxg_A Negative regulator of g 99.7 2.4E-16 8.4E-21 171.4 17.9 184 277-505 177-382 (468)
57 1njg_A DNA polymerase III subu 99.7 2.6E-15 8.8E-20 145.1 22.4 190 275-505 18-232 (250)
58 2z4s_A Chromosomal replication 99.7 4.1E-16 1.4E-20 168.3 18.0 175 322-508 130-313 (440)
59 3co5_A Putative two-component 99.7 2.1E-17 7.1E-22 151.0 5.6 133 281-463 5-142 (143)
60 3qwz_A Transitional endoplasmi 99.7 4.8E-18 1.6E-22 164.9 1.0 110 111-236 39-158 (211)
61 2v1u_A Cell division control p 99.7 2E-15 7E-20 157.5 19.7 210 275-508 14-256 (387)
62 3bos_A Putative DNA replicatio 99.7 1.7E-15 5.9E-20 147.5 17.8 190 274-508 22-224 (242)
63 2p65_A Hypothetical protein PF 99.7 5.7E-16 2E-20 144.7 12.4 157 277-462 19-187 (187)
64 2r44_A Uncharacterized protein 99.6 4E-16 1.4E-20 161.3 11.9 166 279-475 26-199 (331)
65 1qvr_A CLPB protein; coiled co 99.6 4.6E-15 1.6E-19 172.6 21.5 201 277-506 167-390 (854)
66 1iqp_A RFCS; clamp loader, ext 99.6 1.1E-14 3.6E-19 149.0 21.0 193 274-505 19-216 (327)
67 1sxj_D Activator 1 41 kDa subu 99.6 3.5E-15 1.2E-19 154.6 17.0 192 274-505 31-239 (353)
68 2chq_A Replication factor C sm 99.6 2.7E-15 9.2E-20 152.8 15.7 192 273-503 10-206 (319)
69 1r6b_X CLPA protein; AAA+, N-t 99.6 2.7E-15 9.3E-20 172.2 17.2 200 277-505 183-406 (758)
70 3pxi_A Negative regulator of g 99.6 2.5E-15 8.6E-20 172.6 16.5 185 277-506 177-383 (758)
71 1fnn_A CDC6P, cell division co 99.6 4E-14 1.4E-18 148.2 23.5 203 276-508 13-254 (389)
72 1cz4_A VCP-like ATPase; double 99.6 1.6E-16 5.3E-21 151.7 4.6 112 109-237 19-139 (185)
73 2qby_B CDC6 homolog 3, cell di 99.6 1.7E-14 6E-19 151.0 20.3 196 279-506 19-250 (384)
74 1jr3_A DNA polymerase III subu 99.6 3.6E-14 1.2E-18 148.0 22.0 190 275-505 11-225 (373)
75 3te6_A Regulatory protein SIR3 99.6 8.1E-15 2.8E-19 151.4 16.8 167 282-477 22-214 (318)
76 1sxj_A Activator 1 95 kDa subu 99.6 5E-15 1.7E-19 162.9 16.0 203 274-503 33-251 (516)
77 1sxj_B Activator 1 37 kDa subu 99.6 2.6E-14 9E-19 145.7 19.1 188 274-504 15-212 (323)
78 3tiw_A Transitional endoplasmi 99.6 5.6E-16 1.9E-20 147.7 5.4 111 111-237 36-156 (187)
79 1in4_A RUVB, holliday junction 99.6 1.9E-13 6.5E-18 142.0 22.8 188 276-506 21-228 (334)
80 2qby_A CDC6 homolog 1, cell di 99.6 1.2E-13 4.1E-18 143.8 20.3 209 275-508 15-252 (386)
81 1sxj_E Activator 1 40 kDa subu 99.5 1E-13 3.4E-18 144.1 18.5 192 274-504 8-240 (354)
82 1sxj_C Activator 1 40 kDa subu 99.5 2.2E-13 7.6E-18 141.4 17.6 176 274-491 19-203 (340)
83 1a5t_A Delta prime, HOLB; zinc 99.5 3.5E-13 1.2E-17 140.0 17.4 163 319-500 21-204 (334)
84 3nbx_X ATPase RAVA; AAA+ ATPas 99.5 1.5E-14 5.1E-19 158.1 6.8 187 280-506 22-264 (500)
85 3f9v_A Minichromosome maintena 99.5 1.6E-15 5.6E-20 169.5 -3.9 180 280-475 295-491 (595)
86 2gno_A DNA polymerase III, gam 99.4 5.8E-12 2E-16 129.5 16.1 149 284-474 1-152 (305)
87 3k1j_A LON protease, ATP-depen 99.3 3.2E-12 1.1E-16 143.2 12.8 116 388-506 201-353 (604)
88 1w5s_A Origin recognition comp 99.3 3.2E-11 1.1E-15 127.2 17.8 211 276-507 18-272 (412)
89 3cmw_A Protein RECA, recombina 99.3 2.5E-12 8.4E-17 156.4 9.1 163 273-440 1013-1217(1706)
90 1wlf_A PEX1, peroxisome biogen 99.3 3.7E-13 1.3E-17 127.7 0.9 112 110-238 23-146 (179)
91 3ec2_A DNA replication protein 99.1 2.8E-10 9.5E-15 106.9 9.4 106 275-400 5-112 (180)
92 4akg_A Glutathione S-transfera 99.0 1E-09 3.6E-14 138.8 12.7 142 321-476 1266-1433(2695)
93 2w58_A DNAI, primosome compone 98.9 1.7E-09 5.9E-14 103.1 9.5 109 275-402 20-129 (202)
94 2kjq_A DNAA-related protein; s 98.9 1.7E-09 5.9E-14 99.3 6.9 110 321-460 35-147 (149)
95 2fna_A Conserved hypothetical 98.9 1E-07 3.5E-12 97.7 20.6 187 276-504 9-253 (357)
96 3f8t_A Predicted ATPase involv 98.9 3.2E-10 1.1E-14 121.7 1.7 154 282-466 215-386 (506)
97 2qen_A Walker-type ATPase; unk 98.9 2E-07 6.8E-12 95.4 21.9 191 275-505 7-250 (350)
98 2qgz_A Helicase loader, putati 98.8 2.2E-09 7.6E-14 110.3 4.2 75 321-401 151-227 (308)
99 4akg_A Glutathione S-transfera 98.8 1.1E-07 3.6E-12 120.8 18.4 137 321-472 644-791 (2695)
100 2vhj_A Ntpase P4, P4; non- hyd 98.6 1.8E-08 6.1E-13 103.7 4.1 118 320-447 121-241 (331)
101 1tue_A Replication protein E1; 98.5 2.7E-07 9.3E-12 89.0 8.6 109 321-461 57-179 (212)
102 3vkg_A Dynein heavy chain, cyt 98.4 1.1E-06 3.9E-11 112.3 14.0 135 322-471 604-750 (3245)
103 2r2a_A Uncharacterized protein 98.4 2E-07 6.8E-12 89.7 5.5 134 322-464 5-156 (199)
104 1jr3_D DNA polymerase III, del 98.3 3.7E-06 1.3E-10 86.9 13.8 147 320-491 16-176 (343)
105 3vkg_A Dynein heavy chain, cyt 98.3 3.5E-06 1.2E-10 107.9 15.1 142 320-475 1302-1470(3245)
106 3cmu_A Protein RECA, recombina 98.3 1.8E-06 6E-11 106.8 10.4 116 319-438 1424-1561(2050)
107 1u0j_A DNA replication protein 98.1 1.1E-05 3.8E-10 80.8 10.6 25 322-346 104-128 (267)
108 1ye8_A Protein THEP1, hypothet 97.9 2.7E-05 9.1E-10 73.3 9.5 24 324-347 2-25 (178)
109 3kw6_A 26S protease regulatory 97.7 2.5E-05 8.5E-10 63.3 4.7 53 459-511 1-56 (78)
110 2c9o_A RUVB-like 1; hexameric 97.7 0.00019 6.6E-09 77.2 12.2 103 389-506 296-415 (456)
111 1z6t_A APAF-1, apoptotic prote 97.7 0.00094 3.2E-08 73.6 17.8 180 278-503 122-330 (591)
112 1svm_A Large T antigen; AAA+ f 97.7 1.2E-05 4E-10 84.7 2.2 107 318-450 165-272 (377)
113 2krk_A 26S protease regulatory 97.6 2.5E-05 8.7E-10 64.7 3.4 55 458-512 8-65 (86)
114 2a5y_B CED-4; apoptosis; HET: 97.6 0.0011 3.8E-08 72.9 16.2 172 283-499 131-335 (549)
115 2cvh_A DNA repair and recombin 97.5 0.00029 9.9E-09 67.0 9.2 38 319-362 17-54 (220)
116 1u94_A RECA protein, recombina 97.5 0.00014 4.8E-09 75.9 7.5 81 319-402 60-155 (356)
117 3cmu_A Protein RECA, recombina 97.5 0.00016 5.5E-09 89.6 9.0 83 319-404 1078-1175(2050)
118 2zr9_A Protein RECA, recombina 97.5 0.00011 3.6E-09 76.6 6.0 80 319-402 58-153 (349)
119 2orw_A Thymidine kinase; TMTK, 97.4 6.6E-05 2.2E-09 70.9 3.6 24 323-346 4-27 (184)
120 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00021 7.1E-09 68.3 7.2 28 319-346 20-47 (235)
121 1xp8_A RECA protein, recombina 97.4 0.00026 9.1E-09 74.1 8.4 81 319-402 71-166 (366)
122 1n0w_A DNA repair protein RAD5 97.4 0.00051 1.8E-08 66.3 9.5 28 319-346 21-48 (243)
123 3upu_A ATP-dependent DNA helic 97.4 0.00013 4.6E-09 78.5 5.9 26 323-348 46-71 (459)
124 3hr8_A Protein RECA; alpha and 97.4 0.0002 7E-09 74.7 6.6 80 319-402 58-153 (356)
125 3sfz_A APAF-1, apoptotic pepti 97.3 0.0034 1.2E-07 74.6 17.2 182 278-503 122-330 (1249)
126 3vlf_B 26S protease regulatory 97.2 0.00018 6.1E-09 59.7 3.7 50 462-511 2-54 (88)
127 1qhx_A CPT, protein (chloramph 97.2 0.00032 1.1E-08 64.7 5.7 38 322-365 3-40 (178)
128 2r8r_A Sensor protein; KDPD, P 97.2 0.00085 2.9E-08 65.5 8.8 165 322-511 6-211 (228)
129 1v5w_A DMC1, meiotic recombina 97.2 0.0011 3.9E-08 68.5 9.9 45 319-363 119-166 (343)
130 4a74_A DNA repair and recombin 97.1 0.00094 3.2E-08 63.8 8.3 28 319-346 22-49 (231)
131 2ehv_A Hypothetical protein PH 97.1 0.0011 3.9E-08 64.1 8.7 26 319-344 27-52 (251)
132 2b8t_A Thymidine kinase; deoxy 97.1 0.00089 3E-08 65.3 7.8 77 321-401 11-102 (223)
133 2z43_A DNA repair and recombin 97.1 0.0013 4.3E-08 67.5 9.2 45 319-363 104-151 (324)
134 2iut_A DNA translocase FTSK; n 97.1 0.0097 3.3E-07 65.5 16.2 75 389-471 344-420 (574)
135 3cmw_A Protein RECA, recombina 97.0 0.00059 2E-08 83.7 7.0 83 319-404 31-128 (1706)
136 3aji_B S6C, proteasome (prosom 97.0 0.00029 1E-08 57.5 2.6 50 462-511 2-54 (83)
137 2ius_A DNA translocase FTSK; n 97.0 0.01 3.6E-07 64.6 15.4 75 390-472 299-375 (512)
138 3kb2_A SPBC2 prophage-derived 96.9 0.00089 3.1E-08 60.9 5.6 23 324-346 3-25 (173)
139 1ly1_A Polynucleotide kinase; 96.9 0.0026 9E-08 58.2 8.9 23 322-344 2-24 (181)
140 2dr3_A UPF0273 protein PH0284; 96.9 0.0035 1.2E-07 60.4 10.0 28 319-346 20-47 (247)
141 3trf_A Shikimate kinase, SK; a 96.9 0.00058 2E-08 63.4 4.1 25 322-346 5-29 (185)
142 3vaa_A Shikimate kinase, SK; s 96.9 0.00063 2.1E-08 64.4 4.4 28 319-346 22-49 (199)
143 3lw7_A Adenylate kinase relate 96.8 0.0019 6.6E-08 58.4 7.1 22 324-346 3-24 (179)
144 3e1s_A Exodeoxyribonuclease V, 96.8 0.00095 3.2E-08 74.0 5.8 27 322-348 204-230 (574)
145 2i1q_A DNA repair and recombin 96.8 0.0022 7.6E-08 65.4 8.0 28 319-346 95-122 (322)
146 3lda_A DNA repair protein RAD5 96.8 0.0019 6.6E-08 68.4 7.6 28 319-346 175-202 (400)
147 2p5t_B PEZT; postsegregational 96.8 0.0043 1.5E-07 61.1 9.7 40 319-364 29-68 (253)
148 1pzn_A RAD51, DNA repair and r 96.8 0.0029 1E-07 65.6 8.8 28 319-346 128-155 (349)
149 3io5_A Recombination and repai 96.8 0.0016 5.4E-08 66.8 6.4 78 324-402 30-125 (333)
150 1gvn_B Zeta; postsegregational 96.7 0.0023 7.8E-08 64.6 7.3 42 319-366 30-71 (287)
151 1qde_A EIF4A, translation init 96.7 0.016 5.4E-07 55.1 12.8 64 275-346 12-76 (224)
152 1kag_A SKI, shikimate kinase I 96.7 0.0026 8.9E-08 58.1 6.8 25 322-346 4-28 (173)
153 2rhm_A Putative kinase; P-loop 96.7 0.0012 4.1E-08 61.4 4.3 27 320-346 3-29 (193)
154 1y63_A LMAJ004144AAA protein; 96.6 0.0011 3.8E-08 61.9 4.0 27 320-346 8-35 (184)
155 3iij_A Coilin-interacting nucl 96.6 0.0012 4E-08 61.2 4.0 26 321-346 10-35 (180)
156 1zp6_A Hypothetical protein AT 96.6 0.0013 4.4E-08 61.2 4.2 40 319-364 6-45 (191)
157 1via_A Shikimate kinase; struc 96.6 0.0017 6E-08 59.7 5.0 23 324-346 6-28 (175)
158 2r6a_A DNAB helicase, replicat 96.6 0.0029 9.8E-08 68.0 7.4 42 318-361 199-240 (454)
159 1nks_A Adenylate kinase; therm 96.6 0.0017 5.9E-08 60.0 4.8 37 324-363 3-39 (194)
160 2cdn_A Adenylate kinase; phosp 96.5 0.0019 6.4E-08 60.9 4.7 28 319-346 17-44 (201)
161 2iyv_A Shikimate kinase, SK; t 96.5 0.0016 5.4E-08 60.4 4.0 24 323-346 3-26 (184)
162 1kht_A Adenylate kinase; phosp 96.5 0.0024 8.1E-08 59.1 5.1 25 323-347 4-28 (192)
163 3dm5_A SRP54, signal recogniti 96.5 0.008 2.7E-07 64.3 9.9 77 321-401 99-195 (443)
164 1zuh_A Shikimate kinase; alpha 96.5 0.0017 5.8E-08 59.3 4.0 31 322-358 7-37 (168)
165 3crm_A TRNA delta(2)-isopenten 96.4 0.0035 1.2E-07 64.4 6.4 34 322-361 5-38 (323)
166 1tev_A UMP-CMP kinase; ploop, 96.4 0.0019 6.4E-08 59.9 3.8 25 322-346 3-27 (196)
167 1nlf_A Regulatory protein REPA 96.4 0.0088 3E-07 59.5 9.0 29 319-347 27-55 (279)
168 3jvv_A Twitching mobility prot 96.4 0.0031 1.1E-07 65.7 5.8 28 320-347 121-148 (356)
169 3umf_A Adenylate kinase; rossm 96.4 0.0034 1.2E-07 60.8 5.5 40 319-366 26-65 (217)
170 1g5t_A COB(I)alamin adenosyltr 96.3 0.031 1E-06 53.2 11.9 121 322-459 28-178 (196)
171 1aky_A Adenylate kinase; ATP:A 96.3 0.0022 7.6E-08 61.4 4.1 26 321-346 3-28 (220)
172 2fz4_A DNA repair protein RAD2 96.3 0.0093 3.2E-07 58.2 8.6 23 324-346 110-132 (237)
173 3t61_A Gluconokinase; PSI-biol 96.3 0.0029 1E-07 59.6 4.8 26 321-346 17-42 (202)
174 2c95_A Adenylate kinase 1; tra 96.3 0.0022 7.5E-08 59.7 3.8 26 321-346 8-33 (196)
175 2yvu_A Probable adenylyl-sulfa 96.3 0.0033 1.1E-07 58.4 5.0 43 319-364 10-52 (186)
176 2gxq_A Heat resistant RNA depe 96.3 0.031 1.1E-06 52.2 11.8 25 322-346 38-63 (207)
177 1ukz_A Uridylate kinase; trans 96.3 0.0028 9.5E-08 59.7 4.4 28 319-346 12-39 (203)
178 1qf9_A UMP/CMP kinase, protein 96.3 0.0026 9E-08 58.8 4.1 26 321-346 5-30 (194)
179 3tlx_A Adenylate kinase 2; str 96.3 0.0053 1.8E-07 60.1 6.5 27 320-346 27-53 (243)
180 2ze6_A Isopentenyl transferase 96.3 0.0028 9.4E-08 62.6 4.4 32 324-361 3-34 (253)
181 1vt4_I APAF-1 related killer D 96.3 0.094 3.2E-06 61.7 17.6 43 283-345 131-173 (1221)
182 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.004 1.4E-07 61.6 5.6 42 322-366 4-45 (260)
183 1e6c_A Shikimate kinase; phosp 96.3 0.0023 7.9E-08 58.4 3.6 24 323-346 3-26 (173)
184 2q6t_A DNAB replication FORK h 96.2 0.0046 1.6E-07 66.2 6.3 42 318-361 196-237 (444)
185 1w4r_A Thymidine kinase; type 96.2 0.014 4.7E-07 55.6 8.9 37 320-360 18-55 (195)
186 4gp7_A Metallophosphoesterase; 96.2 0.0094 3.2E-07 54.9 7.6 23 319-341 6-28 (171)
187 3cm0_A Adenylate kinase; ATP-b 96.2 0.0026 9E-08 58.8 3.8 25 322-346 4-28 (186)
188 2vli_A Antibiotic resistance p 96.2 0.0022 7.5E-08 59.1 3.3 25 322-346 5-29 (183)
189 4eun_A Thermoresistant glucoki 96.2 0.0036 1.2E-07 59.1 4.6 28 319-346 26-53 (200)
190 1ex7_A Guanylate kinase; subst 96.2 0.0083 2.8E-07 56.7 7.0 25 323-347 2-26 (186)
191 3be4_A Adenylate kinase; malar 96.2 0.0024 8.3E-08 61.2 3.3 25 322-346 5-29 (217)
192 3bh0_A DNAB-like replicative h 96.2 0.009 3.1E-07 60.9 7.7 40 319-361 65-104 (315)
193 1zd8_A GTP:AMP phosphotransfer 96.1 0.0027 9.3E-08 61.1 3.6 27 320-346 5-31 (227)
194 2bwj_A Adenylate kinase 5; pho 96.1 0.0029 9.8E-08 59.1 3.6 25 322-346 12-36 (199)
195 1ak2_A Adenylate kinase isoenz 96.1 0.0034 1.2E-07 60.8 4.2 27 320-346 14-40 (233)
196 2pt5_A Shikimate kinase, SK; a 96.1 0.0033 1.1E-07 57.1 3.9 23 324-346 2-24 (168)
197 3ney_A 55 kDa erythrocyte memb 96.1 0.009 3.1E-07 57.0 7.0 28 320-347 17-44 (197)
198 1zak_A Adenylate kinase; ATP:A 96.1 0.0044 1.5E-07 59.3 4.9 26 321-346 4-29 (222)
199 3dl0_A Adenylate kinase; phosp 96.1 0.0031 1.1E-07 60.0 3.7 23 324-346 2-24 (216)
200 2pez_A Bifunctional 3'-phospho 96.1 0.004 1.4E-07 57.5 4.3 42 320-364 3-44 (179)
201 1knq_A Gluconate kinase; ALFA/ 96.1 0.0044 1.5E-07 56.8 4.5 26 321-346 7-32 (175)
202 1hv8_A Putative ATP-dependent 96.1 0.029 1E-06 56.8 11.1 62 277-345 6-67 (367)
203 3fb4_A Adenylate kinase; psych 96.1 0.0033 1.1E-07 59.7 3.8 23 324-346 2-24 (216)
204 1t6n_A Probable ATP-dependent 96.1 0.055 1.9E-06 51.2 12.3 63 276-346 13-75 (220)
205 3bor_A Human initiation factor 96.0 0.019 6.7E-07 55.4 9.1 58 275-340 28-85 (237)
206 2dzn_B 26S protease regulatory 96.0 0.00073 2.5E-08 55.1 -1.1 48 464-511 1-51 (82)
207 3pey_A ATP-dependent RNA helic 96.0 0.041 1.4E-06 56.3 11.9 60 277-342 5-64 (395)
208 2zts_A Putative uncharacterize 96.0 0.0065 2.2E-07 58.5 5.3 27 319-345 27-53 (251)
209 3sr0_A Adenylate kinase; phosp 95.9 0.0054 1.8E-07 58.9 4.6 34 324-365 2-35 (206)
210 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0033 1.1E-07 65.4 3.3 25 322-346 24-48 (359)
211 2axn_A 6-phosphofructo-2-kinas 95.9 0.032 1.1E-06 61.0 11.2 44 320-366 33-76 (520)
212 1vec_A ATP-dependent RNA helic 95.9 0.038 1.3E-06 51.6 10.4 19 322-340 40-58 (206)
213 3uie_A Adenylyl-sulfate kinase 95.9 0.0047 1.6E-07 58.3 4.0 29 319-347 22-50 (200)
214 3fmo_B ATP-dependent RNA helic 95.9 0.06 2.1E-06 54.2 12.4 66 275-346 90-156 (300)
215 1w36_D RECD, exodeoxyribonucle 95.9 0.019 6.6E-07 63.9 9.4 25 322-346 164-188 (608)
216 2oxc_A Probable ATP-dependent 95.9 0.023 7.9E-07 54.5 8.7 64 275-346 22-86 (230)
217 3iuy_A Probable ATP-dependent 95.8 0.016 5.5E-07 55.4 7.4 59 274-340 16-75 (228)
218 3kl4_A SRP54, signal recogniti 95.8 0.017 5.8E-07 61.7 8.3 28 321-348 96-123 (433)
219 2bbw_A Adenylate kinase 4, AK4 95.8 0.0072 2.5E-07 58.9 4.7 26 321-346 26-51 (246)
220 2plr_A DTMP kinase, probable t 95.7 0.0059 2E-07 57.4 3.8 27 322-348 4-30 (213)
221 1e4v_A Adenylate kinase; trans 95.7 0.0057 2E-07 58.3 3.5 23 324-346 2-24 (214)
222 2qor_A Guanylate kinase; phosp 95.7 0.0061 2.1E-07 57.7 3.6 28 320-347 10-37 (204)
223 1cke_A CK, MSSA, protein (cyti 95.6 0.0079 2.7E-07 57.4 4.4 24 323-346 6-29 (227)
224 1kgd_A CASK, peripheral plasma 95.6 0.0073 2.5E-07 56.1 3.9 27 321-347 4-30 (180)
225 3llm_A ATP-dependent RNA helic 95.6 0.038 1.3E-06 53.4 9.2 22 322-343 76-97 (235)
226 2jaq_A Deoxyguanosine kinase; 95.6 0.0073 2.5E-07 56.3 3.9 24 324-347 2-25 (205)
227 2if2_A Dephospho-COA kinase; a 95.6 0.013 4.4E-07 55.1 5.6 22 324-346 3-24 (204)
228 2j41_A Guanylate kinase; GMP, 95.6 0.0068 2.3E-07 56.8 3.5 27 320-346 4-30 (207)
229 1m7g_A Adenylylsulfate kinase; 95.5 0.0079 2.7E-07 57.2 3.9 43 319-364 22-65 (211)
230 3ber_A Probable ATP-dependent 95.5 0.062 2.1E-06 52.4 10.4 57 276-340 42-98 (249)
231 1q0u_A Bstdead; DEAD protein, 95.5 0.045 1.5E-06 51.9 9.1 18 323-340 42-59 (219)
232 2xb4_A Adenylate kinase; ATP-b 95.5 0.0091 3.1E-07 57.5 4.1 23 324-346 2-24 (223)
233 1nn5_A Similar to deoxythymidy 95.5 0.0083 2.8E-07 56.6 3.7 27 321-347 8-34 (215)
234 2grj_A Dephospho-COA kinase; T 95.4 0.019 6.4E-07 54.4 6.1 41 322-370 12-52 (192)
235 3eiq_A Eukaryotic initiation f 95.4 0.073 2.5E-06 55.0 11.3 62 277-346 40-102 (414)
236 3b6e_A Interferon-induced heli 95.4 0.04 1.4E-06 51.6 8.4 24 323-346 49-72 (216)
237 1vma_A Cell division protein F 95.4 0.023 7.8E-07 57.9 7.2 29 319-347 101-129 (306)
238 2wwf_A Thymidilate kinase, put 95.4 0.008 2.7E-07 56.6 3.5 27 321-347 9-35 (212)
239 3c8u_A Fructokinase; YP_612366 95.4 0.016 5.5E-07 55.0 5.6 28 320-347 20-47 (208)
240 3r20_A Cytidylate kinase; stru 95.4 0.011 3.9E-07 57.8 4.4 26 321-346 8-33 (233)
241 3nwj_A ATSK2; P loop, shikimat 95.3 0.021 7.2E-07 56.4 6.3 25 322-346 48-72 (250)
242 3tau_A Guanylate kinase, GMP k 95.3 0.0093 3.2E-07 56.7 3.6 28 320-347 6-33 (208)
243 2v54_A DTMP kinase, thymidylat 95.3 0.01 3.4E-07 55.6 3.6 25 322-346 4-28 (204)
244 3fe2_A Probable ATP-dependent 95.3 0.075 2.6E-06 51.3 10.0 58 275-340 27-84 (242)
245 3fht_A ATP-dependent RNA helic 95.3 0.081 2.8E-06 54.5 10.9 66 275-346 23-89 (412)
246 3ake_A Cytidylate kinase; CMP 95.2 0.013 4.5E-07 54.9 4.3 23 324-346 4-26 (208)
247 3zvl_A Bifunctional polynucleo 95.2 0.024 8.2E-07 60.1 6.8 28 319-346 255-282 (416)
248 2j0s_A ATP-dependent RNA helic 95.2 0.13 4.6E-06 53.1 12.4 60 276-343 36-95 (410)
249 3bgw_A DNAB-like replicative h 95.2 0.017 5.8E-07 61.9 5.5 41 318-361 193-233 (444)
250 1s2m_A Putative ATP-dependent 95.2 0.13 4.3E-06 53.1 12.1 61 276-344 20-80 (400)
251 1tf7_A KAIC; homohexamer, hexa 95.2 0.07 2.4E-06 58.2 10.5 29 319-347 278-306 (525)
252 3tr0_A Guanylate kinase, GMP k 95.2 0.013 4.3E-07 54.9 4.0 26 321-346 6-31 (205)
253 1uj2_A Uridine-cytidine kinase 95.2 0.018 6.2E-07 56.4 5.2 28 320-347 20-47 (252)
254 4a1f_A DNAB helicase, replicat 95.1 0.0089 3E-07 61.8 3.0 40 319-361 43-82 (338)
255 1fuu_A Yeast initiation factor 95.1 0.049 1.7E-06 55.8 8.7 65 274-346 18-83 (394)
256 2pbr_A DTMP kinase, thymidylat 95.1 0.011 3.8E-07 54.6 3.3 23 324-346 2-24 (195)
257 2pl3_A Probable ATP-dependent 95.1 0.11 3.9E-06 49.6 10.7 57 276-340 24-80 (236)
258 3fmp_B ATP-dependent RNA helic 95.0 0.11 3.8E-06 55.4 11.4 65 276-346 91-156 (479)
259 1rz3_A Hypothetical protein rb 95.0 0.027 9.1E-07 53.1 5.9 27 320-346 20-46 (201)
260 1ltq_A Polynucleotide kinase; 95.0 0.023 7.8E-07 56.8 5.7 25 322-346 2-26 (301)
261 2px0_A Flagellar biosynthesis 95.0 0.067 2.3E-06 54.0 9.1 28 320-347 103-130 (296)
262 1xti_A Probable ATP-dependent 95.0 0.23 7.9E-06 50.7 13.3 60 277-344 8-67 (391)
263 2bdt_A BH3686; alpha-beta prot 95.0 0.012 4E-07 54.7 3.1 23 324-346 4-26 (189)
264 1jjv_A Dephospho-COA kinase; P 95.0 0.014 4.7E-07 55.0 3.6 22 323-344 3-24 (206)
265 2z0h_A DTMP kinase, thymidylat 95.0 0.013 4.3E-07 54.5 3.3 23 325-347 3-25 (197)
266 1uf9_A TT1252 protein; P-loop, 94.9 0.021 7.3E-07 53.2 4.8 26 320-345 6-31 (203)
267 1xx6_A Thymidine kinase; NESG, 94.9 0.027 9.3E-07 53.3 5.5 26 321-346 7-32 (191)
268 4b3f_X DNA-binding protein smu 94.9 0.034 1.2E-06 62.2 7.2 23 324-346 207-230 (646)
269 3a8t_A Adenylate isopentenyltr 94.9 0.013 4.5E-07 60.4 3.5 26 321-346 39-64 (339)
270 3a00_A Guanylate kinase, GMP k 94.9 0.014 4.8E-07 54.3 3.4 25 323-347 2-26 (186)
271 4e22_A Cytidylate kinase; P-lo 94.9 0.02 6.8E-07 56.3 4.6 26 321-346 26-51 (252)
272 3fho_A ATP-dependent RNA helic 94.8 0.056 1.9E-06 58.6 8.4 26 321-346 157-183 (508)
273 1bif_A 6-phosphofructo-2-kinas 94.8 0.056 1.9E-06 58.1 8.3 41 320-363 37-77 (469)
274 3foz_A TRNA delta(2)-isopenten 94.8 0.021 7.2E-07 58.3 4.6 28 320-347 8-35 (316)
275 1q3t_A Cytidylate kinase; nucl 94.8 0.023 7.9E-07 55.0 4.7 28 319-346 13-40 (236)
276 1lvg_A Guanylate kinase, GMP k 94.8 0.016 5.5E-07 54.7 3.5 27 321-347 3-29 (198)
277 3thx_B DNA mismatch repair pro 94.8 0.081 2.8E-06 61.6 9.9 27 319-345 670-696 (918)
278 1vht_A Dephospho-COA kinase; s 94.6 0.025 8.6E-07 53.7 4.5 24 322-346 4-27 (218)
279 2pt7_A CAG-ALFA; ATPase, prote 94.6 0.015 5E-07 59.8 3.1 73 321-399 170-251 (330)
280 1z6g_A Guanylate kinase; struc 94.6 0.019 6.4E-07 55.2 3.6 28 319-346 20-47 (218)
281 2h92_A Cytidylate kinase; ross 94.6 0.024 8.3E-07 53.7 4.3 25 322-346 3-27 (219)
282 3asz_A Uridine kinase; cytidin 94.6 0.019 6.5E-07 54.2 3.5 27 320-346 4-30 (211)
283 1htw_A HI0065; nucleotide-bind 94.6 0.023 7.7E-07 52.1 3.9 29 319-347 30-58 (158)
284 3tqc_A Pantothenate kinase; bi 94.5 0.042 1.5E-06 56.3 6.2 28 320-347 90-117 (321)
285 1sky_E F1-ATPase, F1-ATP synth 94.4 0.021 7.1E-07 61.5 3.7 26 321-346 150-175 (473)
286 2qt1_A Nicotinamide riboside k 94.4 0.018 6E-07 54.4 2.9 28 319-346 18-45 (207)
287 3thx_A DNA mismatch repair pro 94.4 0.085 2.9E-06 61.5 9.1 24 321-344 661-684 (934)
288 1p9r_A General secretion pathw 94.4 0.082 2.8E-06 56.1 8.3 28 321-348 166-193 (418)
289 3dkp_A Probable ATP-dependent 94.4 0.12 4.2E-06 49.7 9.0 18 322-339 66-83 (245)
290 1odf_A YGR205W, hypothetical 3 94.4 0.054 1.8E-06 54.6 6.5 29 319-347 28-56 (290)
291 2eyu_A Twitching motility prot 94.4 0.032 1.1E-06 55.3 4.8 27 320-346 23-49 (261)
292 2va8_A SSO2462, SKI2-type heli 94.4 0.23 7.8E-06 55.9 12.4 21 320-340 44-64 (715)
293 1q57_A DNA primase/helicase; d 94.3 0.18 6.3E-06 54.4 11.1 41 319-361 239-279 (503)
294 2xau_A PRE-mRNA-splicing facto 94.3 0.13 4.5E-06 58.8 10.3 24 322-345 109-132 (773)
295 1x6v_B Bifunctional 3'-phospho 94.3 0.038 1.3E-06 61.6 5.6 41 321-364 51-91 (630)
296 2f6r_A COA synthase, bifunctio 94.2 0.025 8.6E-07 56.6 3.6 25 321-346 74-98 (281)
297 1m8p_A Sulfate adenylyltransfe 94.2 0.052 1.8E-06 60.0 6.5 42 320-364 394-436 (573)
298 1znw_A Guanylate kinase, GMP k 94.2 0.028 9.6E-07 53.2 3.8 29 319-347 17-45 (207)
299 3exa_A TRNA delta(2)-isopenten 94.1 0.033 1.1E-06 57.0 4.2 25 323-347 4-28 (322)
300 2v3c_C SRP54, signal recogniti 94.1 0.087 3E-06 56.2 7.6 28 320-347 97-124 (432)
301 3d3q_A TRNA delta(2)-isopenten 94.0 0.031 1.1E-06 57.7 3.9 25 323-347 8-32 (340)
302 2v9p_A Replication protein E1; 94.0 0.032 1.1E-06 56.7 3.9 28 319-346 123-150 (305)
303 1g41_A Heat shock protein HSLU 93.9 0.0092 3.2E-07 63.9 -0.4 58 411-470 127-188 (444)
304 1cr0_A DNA primase/helicase; R 93.9 0.035 1.2E-06 55.5 3.9 28 319-346 32-59 (296)
305 2jeo_A Uridine-cytidine kinase 93.9 0.036 1.2E-06 53.9 3.9 29 319-347 22-50 (245)
306 1s96_A Guanylate kinase, GMP k 93.8 0.037 1.2E-06 53.4 3.8 28 320-347 14-41 (219)
307 1gtv_A TMK, thymidylate kinase 93.8 0.016 5.3E-07 54.7 1.1 24 324-347 2-25 (214)
308 1wb9_A DNA mismatch repair pro 93.8 0.19 6.4E-06 57.7 10.3 25 321-345 606-630 (800)
309 2qmh_A HPR kinase/phosphorylas 93.8 0.027 9.3E-07 53.8 2.7 26 321-346 33-58 (205)
310 3lnc_A Guanylate kinase, GMP k 93.7 0.021 7.1E-07 55.0 1.9 28 319-346 24-52 (231)
311 2j9r_A Thymidine kinase; TK1, 93.7 0.16 5.6E-06 48.9 8.0 25 322-346 28-52 (214)
312 4eaq_A DTMP kinase, thymidylat 93.7 0.044 1.5E-06 53.1 4.0 28 321-348 25-52 (229)
313 2gks_A Bifunctional SAT/APS ki 93.6 0.11 3.9E-06 56.9 7.6 45 321-368 371-415 (546)
314 2z0m_A 337AA long hypothetical 93.6 0.1 3.6E-06 52.0 6.8 25 322-346 31-55 (337)
315 2ewv_A Twitching motility prot 93.5 0.046 1.6E-06 57.1 4.2 28 320-347 134-161 (372)
316 2p6r_A Afuhel308 helicase; pro 93.5 0.094 3.2E-06 59.1 7.0 19 322-340 40-58 (702)
317 1wrb_A DJVLGB; RNA helicase, D 93.4 0.18 6.3E-06 48.7 8.1 18 323-340 61-78 (253)
318 3eph_A TRNA isopentenyltransfe 93.4 0.048 1.7E-06 57.6 4.1 26 322-347 2-27 (409)
319 3fdi_A Uncharacterized protein 93.4 0.05 1.7E-06 51.6 3.8 29 323-357 7-35 (201)
320 3b9q_A Chloroplast SRP recepto 93.3 0.056 1.9E-06 54.8 4.2 29 319-347 97-125 (302)
321 2ged_A SR-beta, signal recogni 93.2 0.085 2.9E-06 48.4 5.1 27 320-346 46-72 (193)
322 2i3b_A HCR-ntpase, human cance 93.2 0.052 1.8E-06 51.1 3.6 23 324-346 3-25 (189)
323 3h1t_A Type I site-specific re 93.2 0.24 8.2E-06 54.4 9.5 25 322-346 198-222 (590)
324 3aez_A Pantothenate kinase; tr 93.2 0.059 2E-06 54.9 4.3 29 319-347 87-115 (312)
325 1rj9_A FTSY, signal recognitio 93.1 0.061 2.1E-06 54.6 4.1 27 321-347 101-127 (304)
326 1sq5_A Pantothenate kinase; P- 93.1 0.11 3.8E-06 52.5 6.0 28 320-347 78-105 (308)
327 3ly5_A ATP-dependent RNA helic 93.0 0.18 6.2E-06 49.5 7.4 18 323-340 92-109 (262)
328 3gmt_A Adenylate kinase; ssgci 93.0 0.063 2.2E-06 52.4 3.9 24 323-346 9-32 (230)
329 3oiy_A Reverse gyrase helicase 92.9 0.69 2.4E-05 48.0 12.2 22 322-343 36-57 (414)
330 2i4i_A ATP-dependent RNA helic 92.9 0.36 1.2E-05 49.8 9.9 56 275-338 13-68 (417)
331 2v6i_A RNA helicase; membrane, 92.9 0.33 1.1E-05 51.3 9.7 22 322-343 2-24 (431)
332 3i5x_A ATP-dependent RNA helic 92.8 0.73 2.5E-05 50.0 12.7 19 321-339 110-128 (563)
333 3tif_A Uncharacterized ABC tra 92.8 0.044 1.5E-06 53.4 2.6 28 319-346 28-55 (235)
334 1a7j_A Phosphoribulokinase; tr 92.8 0.051 1.7E-06 54.7 3.0 40 322-364 5-44 (290)
335 4edh_A DTMP kinase, thymidylat 92.7 0.085 2.9E-06 50.6 4.4 29 321-349 5-33 (213)
336 2cbz_A Multidrug resistance-as 92.7 0.047 1.6E-06 53.2 2.6 28 319-346 28-55 (237)
337 3tqf_A HPR(Ser) kinase; transf 92.7 0.059 2E-06 50.4 3.1 25 321-345 15-39 (181)
338 2zj8_A DNA helicase, putative 92.6 0.32 1.1E-05 54.8 9.8 22 322-343 39-61 (720)
339 2o8b_B DNA mismatch repair pro 92.6 0.28 9.5E-06 57.8 9.4 23 322-344 789-811 (1022)
340 1xjc_A MOBB protein homolog; s 92.6 0.078 2.7E-06 49.2 3.8 26 322-347 4-29 (169)
341 2og2_A Putative signal recogni 92.6 0.076 2.6E-06 55.2 4.2 29 319-347 154-182 (359)
342 2pcj_A ABC transporter, lipopr 92.5 0.041 1.4E-06 53.2 1.9 28 319-346 27-54 (224)
343 3e70_C DPA, signal recognition 92.5 0.082 2.8E-06 54.3 4.1 29 319-347 126-154 (328)
344 3kta_A Chromosome segregation 92.4 0.074 2.5E-06 48.7 3.4 24 324-347 28-51 (182)
345 2ocp_A DGK, deoxyguanosine kin 92.4 0.072 2.5E-06 51.5 3.4 26 322-347 2-27 (241)
346 1mv5_A LMRA, multidrug resista 92.3 0.056 1.9E-06 52.8 2.6 28 319-346 25-52 (243)
347 1b0u_A Histidine permease; ABC 92.3 0.057 2E-06 53.5 2.7 29 319-347 29-57 (262)
348 2onk_A Molybdate/tungstate ABC 92.2 0.068 2.3E-06 52.3 3.0 27 319-346 22-48 (240)
349 4f4c_A Multidrug resistance pr 92.2 0.2 6.9E-06 60.7 7.7 30 318-347 440-469 (1321)
350 2zu0_C Probable ATP-dependent 92.2 0.071 2.4E-06 53.0 3.2 27 319-345 43-69 (267)
351 2eyq_A TRCF, transcription-rep 92.2 0.32 1.1E-05 58.1 9.3 24 320-343 622-645 (1151)
352 1gm5_A RECG; helicase, replica 92.2 0.46 1.6E-05 54.4 10.2 25 319-343 386-410 (780)
353 3sqw_A ATP-dependent RNA helic 92.1 0.93 3.2E-05 49.6 12.4 19 321-339 59-77 (579)
354 3e2i_A Thymidine kinase; Zn-bi 92.1 0.093 3.2E-06 50.7 3.7 26 321-346 27-53 (219)
355 3ch4_B Pmkase, phosphomevalona 92.1 0.64 2.2E-05 44.3 9.5 28 319-346 8-35 (202)
356 1g8f_A Sulfate adenylyltransfe 92.0 0.11 3.9E-06 56.4 4.8 28 321-348 394-421 (511)
357 1g6h_A High-affinity branched- 92.0 0.058 2E-06 53.3 2.2 29 319-347 30-58 (257)
358 2d2e_A SUFC protein; ABC-ATPas 91.9 0.067 2.3E-06 52.6 2.6 27 319-345 26-52 (250)
359 1sgw_A Putative ABC transporte 91.9 0.056 1.9E-06 52.0 2.0 28 319-346 32-59 (214)
360 2ghi_A Transport protein; mult 91.9 0.066 2.3E-06 53.0 2.6 28 319-346 43-70 (260)
361 2wsm_A Hydrogenase expression/ 91.9 0.1 3.4E-06 49.2 3.8 27 321-347 29-55 (221)
362 2olj_A Amino acid ABC transpor 91.9 0.068 2.3E-06 53.1 2.7 29 319-347 47-75 (263)
363 3cr8_A Sulfate adenylyltranfer 91.9 0.062 2.1E-06 59.1 2.6 43 320-364 367-409 (552)
364 3fvq_A Fe(3+) IONS import ATP- 91.9 0.07 2.4E-06 55.5 2.8 28 319-346 27-54 (359)
365 2ixe_A Antigen peptide transpo 91.9 0.068 2.3E-06 53.2 2.6 29 319-347 42-70 (271)
366 3hdt_A Putative kinase; struct 91.8 0.11 3.9E-06 50.2 4.1 31 322-358 14-44 (223)
367 2yhs_A FTSY, cell division pro 91.8 0.11 3.7E-06 56.3 4.3 29 319-347 290-318 (503)
368 1np6_A Molybdopterin-guanine d 91.8 0.11 3.9E-06 48.2 3.9 26 322-347 6-31 (174)
369 2pze_A Cystic fibrosis transme 91.8 0.062 2.1E-06 52.1 2.2 29 319-347 31-59 (229)
370 2db3_A ATP-dependent RNA helic 91.8 0.92 3.2E-05 47.7 11.5 56 275-338 54-109 (434)
371 2ff7_A Alpha-hemolysin translo 91.7 0.062 2.1E-06 52.8 2.1 29 319-347 32-60 (247)
372 1ji0_A ABC transporter; ATP bi 91.7 0.062 2.1E-06 52.5 2.1 28 319-346 29-56 (240)
373 1vpl_A ABC transporter, ATP-bi 91.7 0.075 2.6E-06 52.5 2.7 29 319-347 38-66 (256)
374 2it1_A 362AA long hypothetical 91.7 0.086 2.9E-06 54.9 3.2 29 319-347 26-54 (362)
375 1zu4_A FTSY; GTPase, signal re 91.6 0.11 3.9E-06 53.0 4.0 29 319-347 102-130 (320)
376 3rlf_A Maltose/maltodextrin im 91.6 0.087 3E-06 55.2 3.2 29 319-347 26-54 (381)
377 2yz2_A Putative ABC transporte 91.6 0.076 2.6E-06 52.7 2.6 29 319-347 30-58 (266)
378 2yyz_A Sugar ABC transporter, 91.6 0.086 2.9E-06 54.8 3.1 28 319-346 26-53 (359)
379 1v43_A Sugar-binding transport 91.5 0.09 3.1E-06 55.0 3.2 29 319-347 34-62 (372)
380 2qi9_C Vitamin B12 import ATP- 91.5 0.068 2.3E-06 52.6 2.2 28 319-346 23-50 (249)
381 3gfo_A Cobalt import ATP-bindi 91.5 0.068 2.3E-06 53.5 2.1 29 319-347 31-59 (275)
382 4g1u_C Hemin import ATP-bindin 91.4 0.07 2.4E-06 53.0 2.2 28 319-346 34-61 (266)
383 3d31_A Sulfate/molybdate ABC t 91.4 0.075 2.6E-06 55.0 2.5 29 319-347 23-51 (348)
384 3b85_A Phosphate starvation-in 91.4 0.082 2.8E-06 50.5 2.5 24 322-345 22-45 (208)
385 1z47_A CYSA, putative ABC-tran 91.4 0.081 2.8E-06 54.9 2.6 29 319-347 38-66 (355)
386 2gk6_A Regulator of nonsense t 91.3 0.11 3.7E-06 58.0 3.7 24 323-346 196-219 (624)
387 1nrj_B SR-beta, signal recogni 91.3 0.13 4.4E-06 48.3 3.8 27 320-346 10-36 (218)
388 2ihy_A ABC transporter, ATP-bi 91.3 0.073 2.5E-06 53.3 2.2 29 319-347 44-72 (279)
389 1p5z_B DCK, deoxycytidine kina 91.3 0.053 1.8E-06 53.2 1.1 28 320-347 22-49 (263)
390 2hf9_A Probable hydrogenase ni 91.3 0.2 7E-06 47.2 5.2 27 321-347 37-63 (226)
391 4a2p_A RIG-I, retinoic acid in 91.3 0.55 1.9E-05 50.3 9.3 23 323-345 23-45 (556)
392 2f9l_A RAB11B, member RAS onco 91.2 0.11 3.8E-06 48.2 3.2 24 323-346 6-29 (199)
393 2nq2_C Hypothetical ABC transp 91.1 0.077 2.6E-06 52.3 2.1 29 319-347 28-56 (253)
394 2jlq_A Serine protease subunit 91.1 0.55 1.9E-05 49.9 8.9 16 322-337 19-34 (451)
395 1z2a_A RAS-related protein RAB 91.1 0.12 4E-06 45.9 3.1 25 322-346 5-29 (168)
396 2dyk_A GTP-binding protein; GT 91.1 0.13 4.4E-06 45.3 3.3 23 324-346 3-25 (161)
397 1oix_A RAS-related protein RAB 91.0 0.11 3.7E-06 48.2 2.9 24 323-346 30-53 (191)
398 1g29_1 MALK, maltose transport 91.0 0.091 3.1E-06 54.9 2.6 29 319-347 26-54 (372)
399 2gza_A Type IV secretion syste 91.0 0.087 3E-06 54.7 2.4 29 319-347 172-200 (361)
400 3sop_A Neuronal-specific septi 91.0 0.11 3.9E-06 51.6 3.1 23 324-346 4-26 (270)
401 2f1r_A Molybdopterin-guanine d 91.0 0.078 2.7E-06 49.1 1.8 25 323-347 3-27 (171)
402 1lw7_A Transcriptional regulat 90.9 0.12 4.3E-06 53.3 3.5 26 322-347 170-195 (365)
403 3l9o_A ATP-dependent RNA helic 90.8 0.27 9.4E-06 58.4 6.8 23 322-344 199-221 (1108)
404 2oap_1 GSPE-2, type II secreti 90.8 0.086 2.9E-06 57.4 2.3 27 321-347 259-285 (511)
405 2orv_A Thymidine kinase; TP4A 90.8 0.59 2E-05 45.5 7.9 27 321-347 18-45 (234)
406 3p32_A Probable GTPase RV1496/ 90.8 0.28 9.6E-06 50.5 6.1 27 320-346 77-103 (355)
407 2fwr_A DNA repair protein RAD2 90.8 0.45 1.6E-05 50.4 7.9 24 323-346 109-132 (472)
408 3vkw_A Replicase large subunit 90.7 0.24 8.3E-06 52.8 5.5 25 320-344 159-183 (446)
409 1oxx_K GLCV, glucose, ABC tran 90.6 0.079 2.7E-06 55.0 1.7 28 319-346 28-55 (353)
410 3gd7_A Fusion complex of cysti 90.6 0.11 3.8E-06 54.6 2.8 28 319-346 44-71 (390)
411 3v9p_A DTMP kinase, thymidylat 90.5 0.14 4.9E-06 49.6 3.3 27 321-347 24-50 (227)
412 3ld9_A DTMP kinase, thymidylat 90.5 0.18 6.1E-06 48.8 3.9 29 320-348 19-47 (223)
413 2pjz_A Hypothetical protein ST 90.4 0.11 3.8E-06 51.5 2.5 27 319-346 28-54 (263)
414 1wp9_A ATP-dependent RNA helic 90.4 0.76 2.6E-05 47.6 9.1 23 324-346 25-47 (494)
415 1kao_A RAP2A; GTP-binding prot 90.4 0.16 5.6E-06 44.6 3.3 24 323-346 4-27 (167)
416 2bbs_A Cystic fibrosis transme 90.3 0.11 3.7E-06 52.4 2.3 29 319-347 61-89 (290)
417 1u8z_A RAS-related protein RAL 90.2 0.17 5.8E-06 44.6 3.3 25 322-346 4-28 (168)
418 2zej_A Dardarin, leucine-rich 90.2 0.13 4.3E-06 47.2 2.5 21 324-344 4-24 (184)
419 3lv8_A DTMP kinase, thymidylat 90.2 0.17 5.8E-06 49.4 3.6 29 321-349 26-54 (236)
420 2nzj_A GTP-binding protein REM 90.2 0.16 5.4E-06 45.4 3.1 24 322-345 4-27 (175)
421 2xgj_A ATP-dependent RNA helic 90.1 0.57 1.9E-05 55.2 8.6 21 323-343 102-122 (1010)
422 2ce2_X GTPase HRAS; signaling 90.1 0.16 5.3E-06 44.6 3.0 24 323-346 4-27 (166)
423 1ek0_A Protein (GTP-binding pr 90.1 0.17 6E-06 44.7 3.3 24 323-346 4-27 (170)
424 2wji_A Ferrous iron transport 90.0 0.16 5.4E-06 45.6 3.0 23 323-345 4-26 (165)
425 1yks_A Genome polyprotein [con 90.0 0.59 2E-05 49.5 7.9 25 320-344 6-31 (440)
426 3tmk_A Thymidylate kinase; pho 90.0 0.19 6.6E-06 48.3 3.7 27 322-348 5-31 (216)
427 1z0j_A RAB-22, RAS-related pro 89.9 0.18 6.3E-06 44.6 3.3 25 322-346 6-30 (170)
428 3clv_A RAB5 protein, putative; 89.9 0.22 7.7E-06 45.3 4.0 27 320-346 5-31 (208)
429 2lkc_A Translation initiation 89.8 0.21 7.3E-06 44.7 3.7 26 320-345 6-31 (178)
430 1ky3_A GTP-binding protein YPT 89.8 0.18 6E-06 45.3 3.1 27 320-346 6-32 (182)
431 1upt_A ARL1, ADP-ribosylation 89.8 0.21 7.2E-06 44.3 3.6 27 320-346 5-31 (171)
432 1wms_A RAB-9, RAB9, RAS-relate 89.8 0.19 6.5E-06 45.0 3.3 25 322-346 7-31 (177)
433 1tq4_A IIGP1, interferon-induc 89.8 0.23 8E-06 52.5 4.4 26 321-346 68-93 (413)
434 1z08_A RAS-related protein RAB 89.7 0.18 6.3E-06 44.7 3.2 25 322-346 6-30 (170)
435 1pui_A ENGB, probable GTP-bind 89.7 0.11 3.9E-06 48.3 1.8 27 319-345 23-49 (210)
436 2qm8_A GTPase/ATPase; G protei 89.7 0.23 7.7E-06 51.0 4.2 28 319-346 52-79 (337)
437 3nh6_A ATP-binding cassette SU 89.6 0.11 3.9E-06 52.7 1.9 29 319-347 77-105 (306)
438 3tui_C Methionine import ATP-b 89.5 0.17 5.9E-06 52.6 3.2 28 319-346 51-78 (366)
439 2npi_A Protein CLP1; CLP1-PCF1 89.5 0.15 5.2E-06 54.7 2.8 28 319-346 135-162 (460)
440 1c1y_A RAS-related protein RAP 89.4 0.2 6.8E-06 44.2 3.1 24 323-346 4-27 (167)
441 1r2q_A RAS-related protein RAB 89.4 0.2 6.8E-06 44.3 3.1 24 322-345 6-29 (170)
442 2wjy_A Regulator of nonsense t 89.4 0.19 6.6E-06 57.7 3.7 24 323-346 372-395 (800)
443 1g16_A RAS-related protein SEC 89.3 0.18 6.1E-06 44.7 2.8 24 323-346 4-27 (170)
444 2www_A Methylmalonic aciduria 89.3 0.4 1.4E-05 49.4 5.8 25 322-346 74-98 (349)
445 4ddu_A Reverse gyrase; topoiso 89.3 0.84 2.9E-05 54.3 9.2 21 322-342 93-113 (1104)
446 3bc1_A RAS-related protein RAB 89.3 0.21 7.3E-06 45.2 3.3 25 322-346 11-35 (195)
447 1r8s_A ADP-ribosylation factor 89.3 0.21 7.1E-06 44.1 3.1 23 324-346 2-24 (164)
448 1ewq_A DNA mismatch repair pro 89.2 0.48 1.6E-05 54.1 6.8 25 322-346 576-600 (765)
449 2erx_A GTP-binding protein DI- 89.2 0.2 6.9E-06 44.4 3.0 23 323-345 4-26 (172)
450 3ice_A Transcription terminati 89.2 0.2 6.7E-06 52.7 3.3 28 319-346 171-198 (422)
451 3q85_A GTP-binding protein REM 89.2 0.2 6.8E-06 44.5 3.0 21 324-344 4-24 (169)
452 3tbk_A RIG-I helicase domain; 89.1 1.2 4.1E-05 47.6 9.6 23 323-345 20-42 (555)
453 4i1u_A Dephospho-COA kinase; s 89.1 0.36 1.2E-05 46.3 4.9 39 322-369 9-47 (210)
454 2gj8_A MNME, tRNA modification 89.1 0.2 6.9E-06 45.4 3.0 24 322-345 4-27 (172)
455 2wjg_A FEOB, ferrous iron tran 89.1 0.2 6.9E-06 45.5 3.0 24 322-345 7-30 (188)
456 1f2t_A RAD50 ABC-ATPase; DNA d 89.0 0.26 8.9E-06 44.2 3.6 24 323-346 24-47 (149)
457 1z0f_A RAB14, member RAS oncog 89.0 0.22 7.5E-06 44.5 3.1 25 322-346 15-39 (179)
458 3t1o_A Gliding protein MGLA; G 89.0 0.22 7.4E-06 45.3 3.1 25 322-346 14-38 (198)
459 3q72_A GTP-binding protein RAD 89.0 0.18 6.2E-06 44.7 2.5 22 323-344 3-24 (166)
460 4tmk_A Protein (thymidylate ki 88.9 0.25 8.5E-06 47.4 3.6 28 322-349 3-30 (213)
461 4f4c_A Multidrug resistance pr 88.8 0.36 1.2E-05 58.5 5.7 30 318-347 1101-1130(1321)
462 4dsu_A GTPase KRAS, isoform 2B 88.8 0.23 7.9E-06 44.9 3.2 24 323-346 5-28 (189)
463 2dpy_A FLII, flagellum-specifi 88.8 0.24 8E-06 52.9 3.7 30 319-348 154-183 (438)
464 2hxs_A RAB-26, RAS-related pro 88.8 0.21 7E-06 44.8 2.8 25 321-345 5-29 (178)
465 1svi_A GTP-binding protein YSX 88.8 0.25 8.5E-06 45.2 3.4 26 320-345 21-46 (195)
466 2vp4_A Deoxynucleoside kinase; 88.8 0.16 5.4E-06 48.8 2.1 26 320-345 18-43 (230)
467 1yrb_A ATP(GTP)binding protein 88.7 0.42 1.4E-05 46.2 5.2 28 320-347 12-39 (262)
468 3cph_A RAS-related protein SEC 88.7 0.25 8.6E-06 45.8 3.4 27 320-346 18-44 (213)
469 2y8e_A RAB-protein 6, GH09086P 88.7 0.21 7.3E-06 44.6 2.8 24 323-346 15-38 (179)
470 4ag6_A VIRB4 ATPase, type IV s 88.7 0.33 1.1E-05 50.5 4.6 27 321-347 34-60 (392)
471 2a9k_A RAS-related protein RAL 88.7 0.24 8.1E-06 44.6 3.1 25 322-346 18-42 (187)
472 3con_A GTPase NRAS; structural 88.6 0.24 8.1E-06 45.2 3.1 24 323-346 22-45 (190)
473 2oil_A CATX-8, RAS-related pro 88.6 0.24 8.2E-06 45.4 3.2 25 322-346 25-49 (193)
474 3tw8_B RAS-related protein RAB 88.6 0.22 7.5E-06 44.6 2.8 25 321-345 8-32 (181)
475 2efe_B Small GTP-binding prote 88.6 0.25 8.4E-06 44.4 3.2 25 322-346 12-36 (181)
476 2fn4_A P23, RAS-related protei 88.6 0.22 7.7E-06 44.5 2.9 25 322-346 9-33 (181)
477 1c9k_A COBU, adenosylcobinamid 88.6 0.21 7.2E-06 46.8 2.7 21 325-345 2-22 (180)
478 4f92_B U5 small nuclear ribonu 88.6 0.44 1.5E-05 59.2 6.3 23 320-342 940-962 (1724)
479 1m7b_A RND3/RHOE small GTP-bin 88.6 0.22 7.4E-06 45.4 2.8 26 321-346 6-31 (184)
480 3bwd_D RAC-like GTP-binding pr 88.5 0.29 9.9E-06 44.0 3.6 26 320-345 6-31 (182)
481 1ksh_A ARF-like protein 2; sma 88.5 0.26 8.7E-06 44.8 3.2 27 320-346 16-42 (186)
482 2obl_A ESCN; ATPase, hydrolase 88.4 0.22 7.6E-06 51.4 3.0 30 319-348 68-97 (347)
483 1tf7_A KAIC; homohexamer, hexa 88.4 0.21 7.3E-06 54.3 3.1 28 319-346 36-65 (525)
484 2b6h_A ADP-ribosylation factor 88.4 0.28 9.6E-06 45.3 3.5 26 319-344 26-51 (192)
485 1mh1_A RAC1; GTP-binding, GTPa 88.4 0.24 8.2E-06 44.7 2.9 25 322-346 5-29 (186)
486 2z83_A Helicase/nucleoside tri 88.3 1.2 3.9E-05 47.5 8.7 24 320-343 19-43 (459)
487 2bme_A RAB4A, RAS-related prot 88.2 0.24 8.2E-06 44.8 2.8 25 322-346 10-34 (186)
488 3kkq_A RAS-related protein M-R 88.2 0.26 9.1E-06 44.5 3.1 26 321-346 17-42 (183)
489 2xzl_A ATP-dependent helicase 88.1 0.26 9E-06 56.6 3.7 24 323-346 376-399 (802)
490 1ls1_A Signal recognition part 88.1 0.31 1E-05 49.1 3.8 27 321-347 97-123 (295)
491 2g6b_A RAS-related protein RAB 88.1 0.29 9.8E-06 43.9 3.3 26 321-346 9-34 (180)
492 4a4z_A Antiviral helicase SKI2 88.0 0.42 1.4E-05 56.2 5.5 22 323-344 55-76 (997)
493 2p5s_A RAS and EF-hand domain 88.0 0.3 1E-05 45.1 3.5 28 319-346 25-52 (199)
494 2atv_A RERG, RAS-like estrogen 87.9 0.33 1.1E-05 44.7 3.6 27 320-346 26-52 (196)
495 3tkl_A RAS-related protein RAB 87.9 0.28 9.7E-06 44.7 3.1 25 322-346 16-40 (196)
496 1m2o_B GTP-binding protein SAR 87.8 0.28 9.5E-06 45.2 3.0 25 321-345 22-46 (190)
497 1j8m_F SRP54, signal recogniti 87.8 0.26 8.8E-06 49.7 3.0 26 322-347 98-123 (297)
498 2gf9_A RAS-related protein RAB 87.8 0.29 9.9E-06 44.7 3.1 25 322-346 22-46 (189)
499 2j37_W Signal recognition part 87.7 0.3 1E-05 53.1 3.6 28 320-347 99-126 (504)
500 2ykg_A Probable ATP-dependent 87.7 1.2 4.3E-05 49.4 8.9 24 322-345 28-51 (696)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.2e-49 Score=452.29 Aligned_cols=368 Identities=27% Similarity=0.389 Sum_probs=300.2
Q ss_pred chhhhH-HHHHHHhCCCCCCccceEEEEecceEEEEEEecC-----CCCcchHHHHHHHhhCceecccCCCceeEEEee-
Q 047219 111 KERQRI-EELLKRKGMHYGSCPTFTVAVKGQKVTIKFQVPP-----ACEIPQLIANLVSHLGLKVEEHGGGSDMGLRAW- 183 (567)
Q Consensus 111 ~~~~~~-~~~~~~~g~~~g~~~~~~v~~~g~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~- 183 (567)
++++|| ++.|++||+.+||+ |+|+|++.+.|++|+. ..+++++++.+|+|+|+++|| .|+|+++
T Consensus 36 ~~~~~~~~~~~~~l~~~~gd~----v~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~~gd-----~V~v~~~~ 106 (806)
T 3cf2_A 36 NSVVSLSQPKMDELQLFRGDT----VLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD-----VISIQPCP 106 (806)
T ss_dssp TTEEEECHHHHHHTTCCSSCE----EEEECGGGCBCCEEEEECTTSBTTBCEECHHHHHTTTCCTTC-----EEEEEECC
T ss_pred CCEEEECHHHHHHcCCCCCCE----EEEEcCCCceEEEEEcCCCCCCCCEEEeCHHHHHhcCCCCCC-----EEEEEECC
Confidence 678999 69999999999999 9999999888888864 126789999999999999999 9999998
Q ss_pred cccccceeEecCCCCccccCCCccccCcccccccchhee--eeceeecCCCCceeeeccCcCCHHHHHHHHHHHhhhcc-
Q 047219 184 DSAVAWQLTLKPPEKQNESGGDRAQSGDMNAREGDLCIL--IFRSLITSDKPEIEFIKKGSLTSEELDALVSVLQLAGR- 260 (567)
Q Consensus 184 ~~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 260 (567)
++++|++|+++|....+......... .+....+ .++|+..||.+.+.... +.+ .+.+..+.+.+.
T Consensus 107 ~~~~a~~v~l~p~~~~~~~~~~~~~~------~~l~~~~~~~~~~v~~gd~~~v~~~~-~~~-----~f~V~~~~P~~~~ 174 (806)
T 3cf2_A 107 DVKYGKRIHVLPIDDTVEGITGNLFE------VYLKPYFLEAYRPIRKGDIFLVRGGM-RAV-----EFKVVETDPSPYC 174 (806)
T ss_dssp CCCBCSBEEEEEBTTTSTTCCSCHHH------HTHHHHHTTTCCEEETTCEEEECCTT-SCE-----EEEEEEESSSSEE
T ss_pred CCCcCCEEEEeccccchhccchhHHH------HHHHHHHHhcCCcccCCCEEEEecCC-cEE-----EEEEEEEeCCCCe
Confidence 78999999999986644322221101 1112222 24788888876553221 000 000000111110
Q ss_pred ------cccccCcc----ccccCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCC
Q 047219 261 ------RIYGLDEP----QLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGP 330 (567)
Q Consensus 261 ------~~~~~~~~----~~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~Gp 330 (567)
.+.....+ ......+.++|+||+|+++++++|++++.+|+++|++|+.++ ..+|++||||||
T Consensus 175 ~v~~~T~i~~~~~~~~~~~~~~~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g--------~~~p~GILL~GP 246 (806)
T 3cf2_A 175 IVAPDTVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG--------VKPPRGILLYGP 246 (806)
T ss_dssp ECCTTSBCCBCSCCBCCCTTSCCSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCC--------CCCCCEEEEECC
T ss_pred EECCCcEEEEeccccCcccccccCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcC--------CCCCCeEEEECC
Confidence 11111111 112356889999999999999999999999999999999876 789999999999
Q ss_pred CCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHH
Q 047219 331 PGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHE 410 (567)
Q Consensus 331 pGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~ 410 (567)
||||||++|+++|+++ +.+++.++++++.++++|+++..++.+|..|+.++| +||||||||.|.++++....+
T Consensus 247 PGTGKT~LAraiA~el------g~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~~P-sIIfIDEiDal~~~r~~~~~~ 319 (806)
T 3cf2_A 247 PGTGKTLIARAVANET------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAP-AIIFIDELDAIAPKREKTHGE 319 (806)
T ss_dssp TTSCHHHHHHHHHTTT------TCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTSCS-EEEEEESGGGTCCTTTTCCCT
T ss_pred CCCCHHHHHHHHHHHh------CCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHcCC-eEEEEehhcccccccCCCCCh
Confidence 9999999999999999 888999999999999999999999999999998885 999999999999988877667
Q ss_pred HHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHH
Q 047219 411 ATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAEL 485 (567)
Q Consensus 411 ~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~l 485 (567)
..++++++|+..|+++....+|+||+|||+++.+|++|++ ||+..|+++.|+.++|.+||+.+++++. +.++..+
T Consensus 320 ~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~l 399 (806)
T 3cf2_A 320 VERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQV 399 (806)
T ss_dssp THHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHH
T ss_pred HHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHH
Confidence 7788999999999999888999999999999999999999 9999999999999999999999887643 3368999
Q ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHHh
Q 047219 486 ATATEEMSGRDIRDVCQQAERSWASKIIR 514 (567)
Q Consensus 486 a~~t~g~s~~dL~~L~~~a~~~a~~r~i~ 514 (567)
+..|+||+++||..+|++|.+.+.+|...
T Consensus 400 A~~T~GfsgaDL~~Lv~eA~~~A~~r~~~ 428 (806)
T 3cf2_A 400 ANETHGHVGADLAALCSEAALQAIRKKMD 428 (806)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999988887653
No 2
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=2.1e-43 Score=386.10 Aligned_cols=370 Identities=28% Similarity=0.415 Sum_probs=288.5
Q ss_pred hhhhH-HHHHHHhCCCCCCccceEEEEecce--EEEEEEecCC-C--CcchHHHHHHHhhCceecccCCCceeEEEee-c
Q 047219 112 ERQRI-EELLKRKGMHYGSCPTFTVAVKGQK--VTIKFQVPPA-C--EIPQLIANLVSHLGLKVEEHGGGSDMGLRAW-D 184 (567)
Q Consensus 112 ~~~~~-~~~~~~~g~~~g~~~~~~v~~~g~~--~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~ 184 (567)
|++|| ++.|.+||+.+||+ |+|+|++ .|+|++||.. + +++++++.+|+|+|+++|| .|+|+++ +
T Consensus 37 ~~~~~~~~~~~~l~~~~gd~----v~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd-----~v~v~~~~~ 107 (489)
T 3hu3_A 37 SVVSLSQPKMDELQLFRGDT----VLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD-----VISIQPCPD 107 (489)
T ss_dssp TEEEECHHHHHHHTCCTTCE----EEEECSTTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTTC-----EEEEEECTT
T ss_pred CEEEECHHHHHHcCCCCCCE----EEEecCccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCCCC-----EEEEEECCC
Confidence 89999 69999999999999 9999988 6999999973 3 6799999999999999999 9999999 9
Q ss_pred ccccceeEecCCCCcccc-CCCccccCcccccccchheeeeceeecCCCCceeeeccCcCC----HHHHHHHHHHHhhhc
Q 047219 185 SAVAWQLTLKPPEKQNES-GGDRAQSGDMNAREGDLCILIFRSLITSDKPEIEFIKKGSLT----SEELDALVSVLQLAG 259 (567)
Q Consensus 185 ~~~a~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 259 (567)
+++|++|+++|....+.. ..+. .+|+.. ..... ...++..++.+.+.... ..+. ..+...++. +.+ .
T Consensus 108 ~~~a~~v~~~~~~~av~a~~~ga--~d~~~K-p~~~~--~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~-~ 179 (489)
T 3hu3_A 108 VKYGKRIHVLPIDDTVEGITGNL--FEVYLK-PYFLE--AYRPIRKGDIFLVHGGM-RAVEFKVVETDPSPYCI-VAP-D 179 (489)
T ss_dssp CCBCSEEEEEEBGGGSSSCCSCH--HHHTHH-HHHTT--TCEEEETTCEEEEEETT-EEEEEEEEEEESSSEEE-ECT-T
T ss_pred CCccCEEEEcCCCcccccccchh--HHHHhH-HHHhh--cCcccccCCEEEecCCC-ceEEEEEEeecCCCceE-EcC-C
Confidence 999999999997665542 2221 112110 10000 01233333332221100 0000 000000000 000 0
Q ss_pred ccccccCcccc----ccCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcH
Q 047219 260 RRIYGLDEPQL----NTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGK 335 (567)
Q Consensus 260 ~~~~~~~~~~~----~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGK 335 (567)
..+....++.. ....+.++|++|+|++.++++|++++..++.+|++|+.++ ..++.++||+|||||||
T Consensus 180 t~~~~~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g--------~~~~~~vLL~GppGtGK 251 (489)
T 3hu3_A 180 TVIHCEGEPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIG--------VKPPRGILLYGPPGTGK 251 (489)
T ss_dssp CEEECCSSCBCHHHHHHHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHT--------CCCCCEEEEECSTTSSH
T ss_pred eEEEEccCcccccccccccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcC--------CCCCCcEEEECcCCCCH
Confidence 00000001100 1123567899999999999999999999999999999886 78899999999999999
Q ss_pred HHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHH
Q 047219 336 TSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRI 415 (567)
Q Consensus 336 T~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~v 415 (567)
|++|+++|+++ +.+|+++++..+.+.++|+.+..++.+|+.+.... +++|||||||.|.++++....+...++
T Consensus 252 T~lAraia~~~------~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~~-p~iLfLDEId~l~~~~~~~~~~~~~~~ 324 (489)
T 3hu3_A 252 TLIARAVANET------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTHGEVERRI 324 (489)
T ss_dssp HHHHHHHHHHC------SSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTC-SEEEEEESHHHHCBCTTSCCCHHHHHH
T ss_pred HHHHHHHHHHh------CCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhcC-CcEEEecchhhhccccccccchHHHHH
Confidence 99999999998 77899999999999999999999999999998876 499999999999998876666677788
Q ss_pred HHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCH---HHHHHHHHhcc
Q 047219 416 LSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTK---AELAELATATE 490 (567)
Q Consensus 416 l~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~---~~l~~la~~t~ 490 (567)
+..|+..+++.....+++||+|||+++.+++++++ ||+..++|+.|+.++|.+||+.+++.+.. .++..++..+.
T Consensus 325 ~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~ 404 (489)
T 3hu3_A 325 VSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETH 404 (489)
T ss_dssp HHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCT
T ss_pred HHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHcc
Confidence 89999999988888899999999999999999999 99999999999999999999999876532 35788999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 047219 491 EMSGRDIRDVCQQAERSWASKII 513 (567)
Q Consensus 491 g~s~~dL~~L~~~a~~~a~~r~i 513 (567)
||+++||..+|++|+..+.++..
T Consensus 405 g~s~~dL~~L~~~A~~~a~r~~~ 427 (489)
T 3hu3_A 405 GHVGADLAALCSEAALQAIRKKM 427 (489)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999988877654
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-41 Score=354.82 Aligned_cols=225 Identities=32% Similarity=0.560 Sum_probs=208.1
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...|.++|+||+|+++++++|++.+.+|+++|++|+++| ..+|+++|||||||||||++|+|+|+++
T Consensus 140 ~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g--------i~~prGvLL~GPPGTGKTllAkAiA~e~----- 206 (405)
T 4b4t_J 140 EKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG--------IAQPKGVILYGPPGTGKTLLARAVAHHT----- 206 (405)
T ss_dssp ECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT--------CCCCCCEEEESCSSSSHHHHHHHHHHHH-----
T ss_pred cCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC--------CCCCCceEEeCCCCCCHHHHHHHHHHhh-----
Confidence 356889999999999999999999999999999999987 8899999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~ 428 (567)
+.+|+.++++++.++|+|++++.++.+|..|+..+| |||||||||.+.+++... .....++++++||..||++..
T Consensus 207 -~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~aP-~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 207 -DCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAP-SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp -TCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTCS-EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred -CCCceEEEhHHhhccccchHHHHHHHHHHHHHHhCC-ceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 889999999999999999999999999999999985 999999999999876432 234567889999999999998
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCH---HHHHHHHHhccCCCHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTK---AELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~---~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
..+++||+|||+++.||++|+| |||..|+|++|+.++|.+||+.+++++.. .+++.++..++||||+||+++|++
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~e 364 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTE 364 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHH
Confidence 9999999999999999999998 99999999999999999999999987642 368999999999999999999999
Q ss_pred HHHHHHHH
Q 047219 504 AERSWASK 511 (567)
Q Consensus 504 a~~~a~~r 511 (567)
|.+.++++
T Consensus 365 A~~~Air~ 372 (405)
T 4b4t_J 365 AGMYALRE 372 (405)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99877653
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-40 Score=347.45 Aligned_cols=225 Identities=32% Similarity=0.570 Sum_probs=207.5
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...|.++|+||+|+++++++|++.+.+|+++|++|+.+| ..+|++||||||||||||++|+|+|+++
T Consensus 174 ~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G--------i~~prGvLLyGPPGTGKTlLAkAiA~e~----- 240 (437)
T 4b4t_I 174 DKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG--------IKPPKGVILYGAPGTGKTLLAKAVANQT----- 240 (437)
T ss_dssp ESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT--------CCCCSEEEEESSTTTTHHHHHHHHHHHH-----
T ss_pred ccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC--------CCCCCCCceECCCCchHHHHHHHHHHHh-----
Confidence 467889999999999999999999999999999999987 8899999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~ 428 (567)
+.+|+.++++++.++|+|++++.++.+|..|+..+| |||||||||.+..++... ......+++.+||..+|++..
T Consensus 241 -~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP-~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 241 -SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAP-SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp -TCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCS-EEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred -CCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCC-cEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 889999999999999999999999999999999985 999999999999887432 233456788999999999988
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCH---HHHHHHHHhccCCCHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTK---AELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~---~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
..+++||+|||+++.||++|+| |||..|+|+.|+.++|.+||+.+++++.. .+++.++..++|||++||+++|++
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~e 398 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTE 398 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 8999999999999999999998 99999999999999999999999987642 368999999999999999999999
Q ss_pred HHHHHHHH
Q 047219 504 AERSWASK 511 (567)
Q Consensus 504 a~~~a~~r 511 (567)
|.+.++++
T Consensus 399 A~~~Air~ 406 (437)
T 4b4t_I 399 AGLLALRE 406 (437)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99877654
No 5
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=6e-40 Score=378.75 Aligned_cols=365 Identities=28% Similarity=0.415 Sum_probs=291.1
Q ss_pred hhhhH-HHHHHHhCCCCCCccceEEEEecce--EEEEEEecC-CC--CcchHHHHHHHhhCceecccCCCceeEEEee-c
Q 047219 112 ERQRI-EELLKRKGMHYGSCPTFTVAVKGQK--VTIKFQVPP-AC--EIPQLIANLVSHLGLKVEEHGGGSDMGLRAW-D 184 (567)
Q Consensus 112 ~~~~~-~~~~~~~g~~~g~~~~~~v~~~g~~--~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-~ 184 (567)
|++|| ++.|++||+.+||+ |+|+|++ .|+|+|||. .+ +++++++.+|+|+|+++|| +|+|+++ +
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~ 107 (806)
T 1ypw_A 37 SVVSLSQPKMDELQLFRGDT----VLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD-----VISIQPCPD 107 (806)
T ss_dssp SCEEECHHHHHHHTCCTTCE----EEEEETTTEECCEEEEECSSSCTTEEECCHHHHTTTTCCTTC-----EEEEEECTT
T ss_pred CEEEECHHHHHHcCCCCCCE----EEEecCccCcEEEEEecCCCCCCCeEEecHHHHhhcCCCCCC-----EEEEEECCC
Confidence 88999 69999999999999 9999998 588999986 33 6799999999999999999 9999999 7
Q ss_pred ccccceeEecCCCCccccCCCccccCcccccccchhee--eeceeecCCCCceeeeccCcCCHHHHHHHHHHHhhhcccc
Q 047219 185 SAVAWQLTLKPPEKQNESGGDRAQSGDMNAREGDLCIL--IFRSLITSDKPEIEFIKKGSLTSEELDALVSVLQLAGRRI 262 (567)
Q Consensus 185 ~~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (567)
+++|++|+|+|...++....+.....|+ ...+ .++|+..|+.+.+.... ..+ ...+..+.+.+..+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~-~~~-----~~~v~~~~p~~~~~ 175 (806)
T 1ypw_A 108 VKYGKRIHVLPIDDTVEGITGNLFEVYL------KPYFLEAYRPIRKGDIFLVRGGM-RAV-----EFKVVETDPSPYCI 175 (806)
T ss_dssp CCBCSEEEEEECTTTSSSCCSCCTTTTT------GGGTTTTCCBCCTTCEEEECCSS-SCE-----EEEEEEETTTTCCB
T ss_pred CCcCcEEEEeCCccchhhcccchHHHHH------HHHhccCCccccCCCEEEecCCC-cce-----EEEEEeccCCCCce
Confidence 9999999999987655421121111222 2222 25788888865432110 000 00000011111100
Q ss_pred -------cccCcc----ccccCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCC
Q 047219 263 -------YGLDEP----QLNTSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPP 331 (567)
Q Consensus 263 -------~~~~~~----~~~~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~Gpp 331 (567)
.....+ ......+.++|++|+|+++++++|++.+..++.+|++|+.++ ..++.++||+|||
T Consensus 176 v~~~t~~~~~~~~~~~~~~~~~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~--------i~~~~~vLL~Gp~ 247 (806)
T 1ypw_A 176 VAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIG--------VKPPRGILLYGPP 247 (806)
T ss_dssp CCSSSEEEECSCCCCCCTTSCCSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSC--------CCCCCEEEECSCT
T ss_pred ecCCeEEEecCccccchhhhcccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcC--------CCCCCeEEEECcC
Confidence 000111 112245679999999999999999999999999999998775 7889999999999
Q ss_pred CCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHH
Q 047219 332 GTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEA 411 (567)
Q Consensus 332 GTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~ 411 (567)
|||||++|++|++++ +.+++.+++.++.+.+.|+.+..++.+|+.+.... ++++||||||.+...++....+.
T Consensus 248 GtGKTtLarala~~l------~~~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~~~~ 320 (806)
T 1ypw_A 248 GTGKTLIARAVANET------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTHGEV 320 (806)
T ss_dssp TSSHHHHHHHHHHTT------TCEEEEEEHHHHSSSSTTHHHHHHHHHHHHHHHHC-SEEEEEESGGGTSCTTSCCCSHH
T ss_pred CCCHHHHHHHHHHHc------CCcEEEEEchHhhhhhhhhHHHHHHHHHHHHHhcC-CcEEEeccHHHhhhccccccchH
Confidence 999999999999998 67799999999999999999999999999998765 49999999999998876655566
Q ss_pred HHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHH
Q 047219 412 TRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELA 486 (567)
Q Consensus 412 ~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la 486 (567)
..+++..++..+++.....++++|++||+++.+++++++ ||+..+.+..|+.++|.+|++.+++++. ...+..++
T Consensus 321 ~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la 400 (806)
T 1ypw_A 321 ERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA 400 (806)
T ss_dssp HHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHH
T ss_pred HHHHHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHH
Confidence 678888999999998888899999999999999999998 9999999999999999999998887643 23578899
Q ss_pred HhccCCCHHHHHHHHHHHHHHHHHHH
Q 047219 487 TATEEMSGRDIRDVCQQAERSWASKI 512 (567)
Q Consensus 487 ~~t~g~s~~dL~~L~~~a~~~a~~r~ 512 (567)
..+.|++++++..++.+++..+.++.
T Consensus 401 ~~t~g~~g~dl~~l~~ea~~~a~r~~ 426 (806)
T 1ypw_A 401 NETHGHVGADLAALCSEAALQAIRKK 426 (806)
T ss_dssp HSCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HhhcCcchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988776653
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-39 Score=345.76 Aligned_cols=225 Identities=31% Similarity=0.565 Sum_probs=207.9
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...|.++|+||+|++++|++|++.|.+|+.+|++|+++| ..+|++||||||||||||++|+|||+++
T Consensus 201 ~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G--------i~pprGILLyGPPGTGKTlLAkAiA~e~----- 267 (467)
T 4b4t_H 201 EEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG--------IDPPKGILLYGPPGTGKTLCARAVANRT----- 267 (467)
T ss_dssp ESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT--------CCCCSEEEECSCTTSSHHHHHHHHHHHH-----
T ss_pred cCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC--------CCCCCceEeeCCCCCcHHHHHHHHHhcc-----
Confidence 467899999999999999999999999999999999987 8899999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~ 428 (567)
+.+|+.++++++.++|+|++++.++.+|..|+..+| |||||||+|.+..++... ......+++.++|..|+++..
T Consensus 268 -~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~aP-~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 345 (467)
T 4b4t_H 268 -DATFIRVIGSELVQKYVGEGARMVRELFEMARTKKA-CIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP 345 (467)
T ss_dssp -TCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTCS-EEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC
T ss_pred -CCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhcCC-ceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC
Confidence 889999999999999999999999999999999985 999999999999877432 334556788999999999988
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCH---HHHHHHHHhccCCCHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTK---AELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~---~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
..+++||+|||+++.||++|+| ||+..|+|++|+.++|.+||+.+++++.. .+++.++..+.||+++||+++|++
T Consensus 346 ~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~e 425 (467)
T 4b4t_H 346 RGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTE 425 (467)
T ss_dssp TTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHH
Confidence 8999999999999999999998 99999999999999999999999987643 368999999999999999999999
Q ss_pred HHHHHHHH
Q 047219 504 AERSWASK 511 (567)
Q Consensus 504 a~~~a~~r 511 (567)
|.+.++++
T Consensus 426 Aa~~Air~ 433 (467)
T 4b4t_H 426 AGMFAIRA 433 (467)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99887765
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-39 Score=347.11 Aligned_cols=225 Identities=33% Similarity=0.560 Sum_probs=207.7
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...|.++|+||+|++++|+.|++.+.+|+++|++|+++| ..+|++||||||||||||++|+|+|+++
T Consensus 173 ~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g--------~~~prGvLLyGPPGTGKTllAkAiA~e~----- 239 (434)
T 4b4t_M 173 DEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG--------IRAPKGALMYGPPGTGKTLLARACAAQT----- 239 (434)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC--------CCCCCEEEEESCTTSSHHHHHHHHHHHH-----
T ss_pred CCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC--------CCCCCeeEEECcCCCCHHHHHHHHHHHh-----
Confidence 467889999999999999999999999999999999987 8899999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhh---HHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l---~~~~~~vl~~LL~~ld~~~~ 428 (567)
+.+|+.++++++.++|+|++++.++.+|..|+..+| |||||||||.+..++.... .....+++.+||..|+++..
T Consensus 240 -~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP-~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 240 -NATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAP-TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp -TCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCS-EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred -CCCEEEEehhhhhhcccchHHHHHHHHHHHHHhcCC-eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 889999999999999999999999999999999885 9999999999998875432 34567788999999999988
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCH---HHHHHHHHhccCCCHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTK---AELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~---~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
..+|+||+|||+++.||++|++ ||+..|+|++|+.++|.+||+.+++++.. .+++.++..++||||+||+++|++
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~e 397 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVE 397 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 8999999999999999999988 99999999999999999999999988643 268999999999999999999999
Q ss_pred HHHHHHHH
Q 047219 504 AERSWASK 511 (567)
Q Consensus 504 a~~~a~~r 511 (567)
|.+.++++
T Consensus 398 A~~~a~r~ 405 (434)
T 4b4t_M 398 AGMIALRN 405 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99887764
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-39 Score=346.02 Aligned_cols=225 Identities=34% Similarity=0.578 Sum_probs=206.8
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...|.++|+||+|++++++.|++.+.+|+++|++|+++| ..+|+++|||||||||||++|+|||+++
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g--------~~~prGvLL~GPPGtGKTllAkAiA~e~----- 239 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG--------IKPPKGVLLYGPPGTGKTLLAKAVAATI----- 239 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC--------CCCCCEEEEESCTTSSHHHHHHHHHHHH-----
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC--------CCCCCeEEEECCCCCcHHHHHHHHHHHh-----
Confidence 357889999999999999999999999999999999987 8899999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~ 428 (567)
+.+|+.++++++.++|+|+++..++.+|..|...+| |||||||||.+..++... ......+++++||..||++..
T Consensus 240 -~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~~P-~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 240 -GANFIFSPASGIVDKYIGESARIIREMFAYAKEHEP-CIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp -TCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHSCS-EEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred -CCCEEEEehhhhccccchHHHHHHHHHHHHHHhcCC-ceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 889999999999999999999999999999999885 999999999999877432 234567788999999999988
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
..+++||+|||+++.||++|+| ||+..|+|++|+.++|.+||+.+++++. ..+++.++..|+||||+||+++|++
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~e 397 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATE 397 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHH
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHH
Confidence 8999999999999999999998 6999999999999999999999998764 3368999999999999999999999
Q ss_pred HHHHHHHH
Q 047219 504 AERSWASK 511 (567)
Q Consensus 504 a~~~a~~r 511 (567)
|++.++++
T Consensus 398 A~~~air~ 405 (437)
T 4b4t_L 398 AGFFAIRD 405 (437)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 99877653
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-38 Score=340.27 Aligned_cols=225 Identities=38% Similarity=0.604 Sum_probs=207.0
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...|.++|+||+|++++|+.|++.+.+|+++|++|+++| ..+|+++|||||||||||++|+|+|+++
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g--------~~~prGiLL~GPPGtGKT~lakAiA~~~----- 230 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG--------IDPPRGVLLYGPPGTGKTMLVKAVANST----- 230 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC--------CCCCCEEEEESCTTTTHHHHHHHHHHHH-----
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC--------CCCCceEEEECCCCCCHHHHHHHHHHHh-----
Confidence 357889999999999999999999999999999999987 8899999999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCccc
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~ 428 (567)
+.+|+.++++++.++|+|+++..++.+|..|+..+| |||||||+|.+...+... .....++++++||..||++..
T Consensus 231 -~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP-~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 231 -KAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAP-SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp -TCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHTCS-EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred -CCCeEEEecchhhccccchhHHHHHHHHHHHHHcCC-CeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 889999999999999999999999999999999885 999999999999887432 234567889999999999988
Q ss_pred CCcEEEEEeeCCCCCCChHHHh--ccceEEEec-CCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALIS--RFDSMITFG-LPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~-~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~ 502 (567)
..+++||+|||+++.||++|+| ||+..|+|+ +|+.++|.+|++.+++++. ..+++.++..++||||+||+++|+
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~ 388 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQ 388 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHH
Confidence 8999999999999999999998 999999995 8999999999999998764 336899999999999999999999
Q ss_pred HHHHHHHHH
Q 047219 503 QAERSWASK 511 (567)
Q Consensus 503 ~a~~~a~~r 511 (567)
+|.+.++++
T Consensus 389 eA~~~a~r~ 397 (428)
T 4b4t_K 389 EAGLRAVRK 397 (428)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 999877654
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=9.8e-37 Score=348.10 Aligned_cols=228 Identities=31% Similarity=0.566 Sum_probs=182.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..|.++|++|+|++++++.|.+.+.+++++|++|.+++ ..+++++|||||||||||++|+++|+++
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g--------~~~~~gvLl~GPPGtGKT~lAkaiA~e~------ 535 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG--------MTPSKGVLFYGPPGCGKTLLAKAIANEC------ 535 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC--------CCCCSCCEEESSTTSSHHHHHHHHHHTT------
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC--------CCCCceEEEecCCCCCchHHHHHHHHHh------
Confidence 45889999999999999999999999999999998776 7889999999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+.+|+.++.+++.++|+|++++.++.+|+.|+..+| |||||||||.+.+.+... .....++++++||.+||++...
T Consensus 536 ~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P-~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 536 QANFISIKGPELLTMWFGESEANVREIFDKARQAAP-CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp TCEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCS-EEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred CCceEEeccchhhccccchHHHHHHHHHHHHHHcCC-ceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 889999999999999999999999999999998875 999999999999887532 3446678999999999999988
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
.+|+||+|||+++.||++|+| ||+..|+|++|+.++|.+||+.++++++ ..+++.+++.+.||||+||.++|++|
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A 694 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHH
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999987754 34789999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 047219 505 ERSWASKIIRG 515 (567)
Q Consensus 505 ~~~a~~r~i~~ 515 (567)
++.++++.+..
T Consensus 695 ~~~a~r~~~~~ 705 (806)
T 3cf2_A 695 CKLAIRESIES 705 (806)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHh
Confidence 99999887653
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=292.13 Aligned_cols=227 Identities=30% Similarity=0.509 Sum_probs=204.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|+||+|++++++.|++.+.+++++|++|... ..+++++||+||||||||++|+++|+++.
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~---------~~~~~~iLL~GppGtGKT~la~ala~~~~----- 70 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK---------RTPWRGILLFGPPGTGKSYLAKAVATEAN----- 70 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTT---------CCCCSEEEEESSSSSCHHHHHHHHHHHTT-----
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCC---------CCCCceEEEECCCCccHHHHHHHHHHHcC-----
Confidence 4578999999999999999999999999999998632 45779999999999999999999999983
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc-cCCc
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE-QDKK 431 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~-~~~~ 431 (567)
+.+|+.++++++.+++.|+.+..++.+|..+.... ++||||||||.+.+.++........+++++|+..++++. ...+
T Consensus 71 ~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 71 NSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp SCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHTS-SEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred CCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhcC-CcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 45789999999999999999999999999998776 499999999999988776666677888899999999875 3678
Q ss_pred EEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh----CHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL----TKAELAELATATEEMSGRDIRDVCQQAERS 507 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~----~~~~l~~la~~t~g~s~~dL~~L~~~a~~~ 507 (567)
++||+|||+++.+++++++||+..++++.|+.++|.+|++.++... ...++..++..+.||+++||..+|++|++.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~ 229 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQ 229 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998753 577899999999999999999999999999
Q ss_pred HHHHHHh
Q 047219 508 WASKIIR 514 (567)
Q Consensus 508 a~~r~i~ 514 (567)
+.++...
T Consensus 230 a~r~~~~ 236 (322)
T 1xwi_A 230 PVRKVQS 236 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888763
No 12
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=6.7e-33 Score=287.51 Aligned_cols=227 Identities=33% Similarity=0.529 Sum_probs=201.3
Q ss_pred cCCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC
Q 047219 272 TSKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW 351 (567)
Q Consensus 272 ~~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~ 351 (567)
...++++|++|+|++++++.|++.+..++.+|++|... ..+++++||+||||||||++|+++|+++
T Consensus 10 ~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~---------~~~~~~vLl~GppGtGKT~la~aia~~~----- 75 (322)
T 3eie_A 10 SEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN---------RKPTSGILLYGPPGTGKSYLAKAVATEA----- 75 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTT---------CCCCCEEEEECSSSSCHHHHHHHHHHHH-----
T ss_pred ecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcC---------CCCCCeEEEECCCCCcHHHHHHHHHHHH-----
Confidence 35678999999999999999999999999999988653 4678899999999999999999999999
Q ss_pred CCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc-cCC
Q 047219 352 QGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE-QDK 430 (567)
Q Consensus 352 ~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~-~~~ 430 (567)
+.+++.++++++.++++|+.+..++.+|..+.... ++||||||||.|..++.........+++++++..+++.. ...
T Consensus 76 -~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 76 -NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp -TCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHTS-SEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred -CCCEEEEchHHHhhcccchHHHHHHHHHHHHHhcC-CeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 77899999999999999999999999999998876 499999999999887765544556677889999998874 567
Q ss_pred cEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 431 KVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 431 ~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
+++||+|||.++.++++|++||+..++++.|+.++|.+|++.++.. +....+..++..+.||+++||+.+|++|++
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~ 233 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 233 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTT
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999875 357789999999999999999999999999
Q ss_pred HHHHHHHh
Q 047219 507 SWASKIIR 514 (567)
Q Consensus 507 ~a~~r~i~ 514 (567)
.+.++...
T Consensus 234 ~a~r~~~~ 241 (322)
T 3eie_A 234 QPIRKIQS 241 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99888764
No 13
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=9.5e-32 Score=282.92 Aligned_cols=226 Identities=33% Similarity=0.529 Sum_probs=193.7
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|++|+|++++++.|++.+.+++.+|++|... ..+++++||+||||||||++|+++|+++
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~---------~~~~~~iLL~GppGtGKT~la~ala~~~------ 108 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGN---------RKPTSGILLYGPPGTGKSYLAKAVATEA------ 108 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSS---------CCCCCCEEEECSTTSCHHHHHHHHHHHH------
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcC---------CCCCceEEEECCCCCcHHHHHHHHHHHh------
Confidence 4567899999999999999999999999999998742 5678899999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCccc-CCc
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ-DKK 431 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~-~~~ 431 (567)
+.+++.+++.++.+.++|+.+..++.+|..+.... ++||||||||.|...+.........+++++|+..+++... ..+
T Consensus 109 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 109 NSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp TCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTS-SEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred CCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcC-CeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 77899999999999999999999999999998766 5999999999998876655555667788899999987753 568
Q ss_pred EEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAERS 507 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~~ 507 (567)
++||++||.++.+++++++||+..++++.|+.++|.+|++.++.. +...+++.++..+.||+++||+.+|++|.+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 267 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875 3577899999999999999999999999999
Q ss_pred HHHHHHh
Q 047219 508 WASKIIR 514 (567)
Q Consensus 508 a~~r~i~ 514 (567)
+.++...
T Consensus 268 a~~~~~~ 274 (355)
T 2qp9_X 268 PIRKIQS 274 (355)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887653
No 14
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.98 E-value=1.7e-31 Score=274.43 Aligned_cols=227 Identities=31% Similarity=0.576 Sum_probs=200.2
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|++|+|++++++.|++.+.+++.+|+.|..++ ..++.++||+||||||||++|+++|+++
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~--------~~~~~~vLL~Gp~GtGKT~la~ala~~~------ 73 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG--------MTPSKGVLFYGPPGCGKTLLAKAIANEC------ 73 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC--------CCCCSEEEEECSSSSSHHHHHHHHHHHT------
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC--------CCCCceEEEECCCCcCHHHHHHHHHHHh------
Confidence 45789999999999999999999999999999998876 6788999999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhh---HHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l---~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+.+++.+++..+.++++|+.+..++.+|..+.... +++|||||||.|...++... .....+++++|+..++++...
T Consensus 74 ~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 74 QANFISIKGPELLTMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp TCEEEEECHHHHHHHHHTTCTTHHHHHHHHHHHTC-SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred CCCEEEEEhHHHHhhhcCchHHHHHHHHHHHHhcC-CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 67899999999999999999999999999998776 49999999999987764321 112345668889999888777
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
.+++||+|||+++.+++++++ ||+..++++.|+.++|.+|++.+++... ..+++.++..+.||+++||+++|+.|
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a 232 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 232 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHH
Confidence 899999999999999999998 9999999999999999999999887643 23577888999999999999999999
Q ss_pred HHHHHHHHHh
Q 047219 505 ERSWASKIIR 514 (567)
Q Consensus 505 ~~~a~~r~i~ 514 (567)
...+..+.+.
T Consensus 233 ~~~a~~~~~~ 242 (301)
T 3cf0_A 233 CKLAIRESIE 242 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9888877653
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.97 E-value=6.2e-31 Score=284.69 Aligned_cols=227 Identities=31% Similarity=0.518 Sum_probs=193.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|++|+|++++++.|++.+.+++.+|++|... ..+++++||+||||||||++|+++|+++.
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~---------~~~~~~vLL~GppGtGKT~lA~aia~~~~----- 192 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGK---------RTPWRGILLFGPPGTGKSYLAKAVATEAN----- 192 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGG---------GCCCSEEEEECSTTSSHHHHHHHHHHHCC-----
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhcc---------CCCCceEEEECCCCCCHHHHHHHHHHHcC-----
Confidence 4678999999999999999999999999999988632 45779999999999999999999999983
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc-cCCc
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE-QDKK 431 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~-~~~~ 431 (567)
+.+|+.++++++.+.++|+.+..++.+|..+.... ++||||||||.|.+.+.........+++++|+..+++.. ...+
T Consensus 193 ~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 193 NSTFFSISSSDLVSKWLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp SSEEEEECCC---------CCCTHHHHHHHHHHSC-SEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred CCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcC-CeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 45799999999999999999899999999988766 499999999999877665555556778899999999875 3678
Q ss_pred EEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAERS 507 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~~ 507 (567)
++||+|||+++.++++|++||+..+.++.|+.++|.+|++.++.. +...++..++..+.||+++||..+|++|++.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~ 351 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQ 351 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999875 4677899999999999999999999999999
Q ss_pred HHHHHHh
Q 047219 508 WASKIIR 514 (567)
Q Consensus 508 a~~r~i~ 514 (567)
+.++...
T Consensus 352 a~r~~~~ 358 (444)
T 2zan_A 352 PVRKVQS 358 (444)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9988764
No 16
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=1.4e-30 Score=264.58 Aligned_cols=227 Identities=29% Similarity=0.535 Sum_probs=185.4
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..|.++|+||+|++++++.|++.+.+++.+++.|+.++ ...+++++|+||||||||+++++|+.++
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~--------l~~~~GvlL~Gp~GtGKTtLakala~~~------ 68 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALG--------LVTPAGVLLAGPPGCGKTLLAKAVANES------ 68 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTT--------CCCCSEEEEESSTTSCHHHHHHHHHHHT------
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC--------CCCCCeEEEECCCCCcHHHHHHHHHHHc------
Confidence 35779999999999999999999999999999999886 6778889999999999999999999998
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
+.+++.+++.++.+.+.|+.+..++.+|+.+.... ++++|+||+|.+...+.........+.+++++..|++......+
T Consensus 69 ~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~-p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 69 GLNFISVKGPELLNMYVGESERAVRQVFQRAKNSA-PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp TCEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTC-SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred CCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcC-CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 56799999999988888999999999999987665 49999999999876543322223345678899999988888889
Q ss_pred EEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHh---h---CHHHHHHHHHhc--cCCCHHHHHHHHH
Q 047219 433 VVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKH---L---TKAELAELATAT--EEMSGRDIRDVCQ 502 (567)
Q Consensus 433 iVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~---~---~~~~l~~la~~t--~g~s~~dL~~L~~ 502 (567)
+++++||+++.+|+++++ ||+..|+++.|+.++|.+|++.++++ . ...+++.++..+ +||+++||..+|+
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~ 227 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVR 227 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHH
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHH
Confidence 999999999999999998 99999999999999999999998753 1 133678888864 5999999999999
Q ss_pred HHHHHHHHHHHh
Q 047219 503 QAERSWASKIIR 514 (567)
Q Consensus 503 ~a~~~a~~r~i~ 514 (567)
+|...+.++.+.
T Consensus 228 ~a~~~a~~~~~~ 239 (274)
T 2x8a_A 228 EASICALRQEMA 239 (274)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHHh
Confidence 999988877643
No 17
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.7e-29 Score=264.32 Aligned_cols=222 Identities=30% Similarity=0.587 Sum_probs=193.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
.+.++|++|+|++++++.|++.+.+++.++++|... ..+++++||+||||||||++|+++|+++ +
T Consensus 78 ~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~---------~~~~~~vLl~GppGtGKT~la~aia~~~------~ 142 (357)
T 3d8b_A 78 GPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGL---------RGPPKGILLFGPPGTGKTLIGKCIASQS------G 142 (357)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGG---------GSCCSEEEEESSTTSSHHHHHHHHHHHT------T
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhc---------cCCCceEEEECCCCCCHHHHHHHHHHHc------C
Confidence 467899999999999999999999999999988755 3678899999999999999999999998 7
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc--cCCc
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE--QDKK 431 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~--~~~~ 431 (567)
.+++.++++.+.+.+.|+.+..++.+|..+.... ++||||||||.|...++........++++.++..+++.. ...+
T Consensus 143 ~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 143 ATFFSISASSLTSKWVGEGEKMVRALFAVARCQQ-PAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp CEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTC-SEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred CeEEEEehHHhhccccchHHHHHHHHHHHHHhcC-CeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 7899999999999999999999999999888765 599999999999887665545556677888888888764 3468
Q ss_pred EEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAERS 507 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~~ 507 (567)
++||+|||.++.+++++++||+..++++.|+.++|.+|+..++++ +....++.++..+.||+++||+.+|+++|..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~ 301 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLG 301 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999989999999999999999999875 5678899999999999999999999999987
Q ss_pred HHHH
Q 047219 508 WASK 511 (567)
Q Consensus 508 a~~r 511 (567)
+.++
T Consensus 302 ~ir~ 305 (357)
T 3d8b_A 302 PIRS 305 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7664
No 18
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.96 E-value=2.7e-29 Score=256.09 Aligned_cols=224 Identities=32% Similarity=0.593 Sum_probs=191.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..++++|++|+|++++++.+++.+..++.+|++|..+ ..++.++||+||||||||++|+++|+++
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~---------~~~~~~vll~Gp~GtGKT~la~~la~~~------ 78 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGL---------RAPAKGLLLFGPPGNGKTLLARAVATEC------ 78 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGG---------GCCCSEEEEESSSSSCHHHHHHHHHHHT------
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcC---------CCCCCeEEEECcCCCCHHHHHHHHHHHh------
Confidence 4567899999999999999999999999999988765 3567899999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccC---
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD--- 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~--- 429 (567)
+.+++.+++..+.+.+.|..+..++.+|..+.... +++|||||+|.+...++........+..+.++..+++....
T Consensus 79 ~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 79 SATFLNISAASLTSKYVGDGEKLVRALFAVARHMQ-PSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp TCEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHTC-SEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred CCCeEEeeHHHHhhcccchHHHHHHHHHHHHHHcC-CcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 67899999999999999999899999999888765 59999999999988766544444456667888888766432
Q ss_pred CcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
.+++||++||.++.+++++++||+..+.++.|+.++|.+|++.++++ +....+..++..+.|++++||+.+|+++|
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~ 237 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAA 237 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999998875 45778999999999999999999999999
Q ss_pred HHHHHHH
Q 047219 506 RSWASKI 512 (567)
Q Consensus 506 ~~a~~r~ 512 (567)
..+.++.
T Consensus 238 ~~a~r~~ 244 (297)
T 3b9p_A 238 LEPIREL 244 (297)
T ss_dssp THHHHTC
T ss_pred HHHHHHH
Confidence 8776653
No 19
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.96 E-value=3.6e-29 Score=266.04 Aligned_cols=224 Identities=33% Similarity=0.580 Sum_probs=186.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|++|+|++.+++.|.+.+..++.++++|..++ .++.++||+||||||||++|++||+++
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~---------~~~~~vLL~GppGtGKT~la~aia~~~------ 172 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLR---------APARGLLLFGPPGNGKTMLAKAVAAES------ 172 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG---------CCCSEEEEESSTTSCHHHHHHHHHHHT------
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccC---------CCCceEEEECCCCCCHHHHHHHHHHhh------
Confidence 45678999999999999999999999999999887653 567899999999999999999999998
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCccc--CC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ--DK 430 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~--~~ 430 (567)
+.+|+.+++..+.+.+.|+.+..+..+|..+.... ++||||||||.|...++........+++..|+..+++... ..
T Consensus 173 ~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~-~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 173 NATFFNISAASLTSKYVGEGEKLVRALFAVARELQ-PSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp TCEEEEECSCCC-------CHHHHHHHHHHHHHSS-SEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred cCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcC-CeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 77899999999999999999999999999998776 4999999999998776655444566777888888887643 56
Q ss_pred cEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 431 KVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 431 ~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
+++||+|||.++.+++++++||+..++++.|+.++|.+|++.++.. +....+..++..+.|+++++|..+|+++|.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~ 331 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAAL 331 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 7999999999999999999999889999999999999999998865 677889999999999999999999999998
Q ss_pred HHHHHH
Q 047219 507 SWASKI 512 (567)
Q Consensus 507 ~a~~r~ 512 (567)
.+.+++
T Consensus 332 ~~~rel 337 (389)
T 3vfd_A 332 GPIREL 337 (389)
T ss_dssp HHHHTS
T ss_pred HHHHhh
Confidence 877664
No 20
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=8.7e-29 Score=250.68 Aligned_cols=224 Identities=33% Similarity=0.606 Sum_probs=196.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|++|+|++++++.|++.+..++.++++|+.++ ...+.++||+||||||||++|+++++.+
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~ll~G~~GtGKT~la~~la~~~------ 75 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVG--------IEPPKGILLYGPPGTGKTLLAKAVATET------ 75 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHC--------CCCCSEEEEESSSSSSHHHHHHHHHHHT------
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC--------CCCCCeEEEECCCCCcHHHHHHHHHHHh------
Confidence 45779999999999999999999999999999999886 6788999999999999999999999998
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+.+++.+++..+...+.|.....+..+|..+.... ++||||||+|.+..++++. .....++.+..++..+++....
T Consensus 76 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 76 NATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKA-PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp TCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHTC-SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred CCCEEEEehHHHHHhccchHHHHHHHHHHHHHHcC-CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 77899999999999999999999999999998776 4999999999998765432 1223456667778888777777
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
.+++||+|||.++.+++++++ ||+..+.++.|+.++|.+|++.+++.+. ..++..++..+.|++++||+.+|+.|
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a 234 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEA 234 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 899999999999999999999 9999999999999999999999887643 23688999999999999999999999
Q ss_pred HHHHHHH
Q 047219 505 ERSWASK 511 (567)
Q Consensus 505 ~~~a~~r 511 (567)
...+..+
T Consensus 235 ~~~a~~~ 241 (285)
T 3h4m_A 235 GMNAIRE 241 (285)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 8776553
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=8.5e-29 Score=269.12 Aligned_cols=221 Identities=29% Similarity=0.519 Sum_probs=191.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
.+.++|++|+|++++++++++.+. .+.+|+.|+.++ ...|+++||+||||||||++|+++|+++ +
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~-~l~~~~~~~~~g--------~~~p~gvLL~GppGtGKT~Laraia~~~------~ 74 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVE-FLKDPSKFNRIG--------ARMPKGILLVGPPGTGKTLLARAVAGEA------N 74 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHH-HHHCTHHHHTTT--------CCCCSEEEEECCTTSSHHHHHHHHHHHH------T
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHH-HhhChHHHhhcC--------CCCCCeEEEECCCCCCHHHHHHHHHHHc------C
Confidence 567899999999999999999875 478888898776 6788999999999999999999999999 7
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCcccCC
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
.+|+.++++++...++|.....++.+|..+...+ ++||||||||.+..+++.. ......+++++|+..++++....
T Consensus 75 ~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~~~-p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 75 VPFFHISGSDFVELFVGVGAARVRDLFAQAKAHA-PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp CCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHHTC-SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred CCeeeCCHHHHHHHHhcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 8899999999999999999999999999998876 4999999999998877643 22234567889999999877778
Q ss_pred cEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 431 KVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 431 ~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
+++||++||+++.+++++++ ||+..+.++.|+.++|.+|++.+++... ..++..++..+.|++++||.++|++|.
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aa 233 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAA 233 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99999999999999999998 9999999999999999999999887643 225778999999999999999999998
Q ss_pred HHHHH
Q 047219 506 RSWAS 510 (567)
Q Consensus 506 ~~a~~ 510 (567)
..+.+
T Consensus 234 l~A~~ 238 (476)
T 2ce7_A 234 LLAAR 238 (476)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 22
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=245.32 Aligned_cols=220 Identities=30% Similarity=0.489 Sum_probs=173.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
+.++|++|+|++++++.+++.+.. +.+++.|..++ ...+.++||+||||||||++|+++|+++ +.
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g--------~~~~~~vll~G~~GtGKT~la~~la~~~------~~ 65 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLG--------AKVPKGALLLGPPGCGKTLLAKAVATEA------QV 65 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC--------------CCCCCEEEEESCTTSSHHHHHHHHHHHH------TC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcC--------CCCCceEEEECCCCCCHHHHHHHHHHHh------CC
Confidence 458899999999999999998765 78888887765 6788999999999999999999999999 77
Q ss_pred CeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhh----HHHHHHHHHHHHHhhcCcccCC
Q 047219 355 PLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM----HEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 355 ~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l----~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
+++.+++..+.+.+.|.....+..+|..+.... +++|||||+|.+..++.... ....+..+..++..+++.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 66 PFLAMAGAEFVEVIGGLGAARVRSLFKEARARA-PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp CEEEEETTTTSSSSTTHHHHHHHHHHHHHHHTC-SEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred CEEEechHHHHhhccChhHHHHHHHHHHHHhcC-CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 899999999988888888888999999988765 59999999999977654322 2223456677888888776677
Q ss_pred cEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC----HH-HHHHHHHhccCCCHHHHHHHHHH
Q 047219 431 KVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT----KA-ELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 431 ~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~----~~-~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
++++|++||.++.+++++++ ||+..++++.|+.++|.++++.++..+. .. ....++..+.|+++++|+.+|+.
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~ 224 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNE 224 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999887642 22 45789999999999999999999
Q ss_pred HHHHHHH
Q 047219 504 AERSWAS 510 (567)
Q Consensus 504 a~~~a~~ 510 (567)
|+..+..
T Consensus 225 a~~~a~~ 231 (262)
T 2qz4_A 225 AALHAAR 231 (262)
T ss_dssp HHTC---
T ss_pred HHHHHHH
Confidence 8866544
No 23
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=2.4e-28 Score=244.39 Aligned_cols=222 Identities=32% Similarity=0.563 Sum_probs=186.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+..+|++|+|++++++.+.+.+.. +.+++.|+.++ ...+++++|+||||||||++|+++|+++
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~--------~~~~~~vll~G~~GtGKT~la~~la~~~------ 69 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLG--------GKIPKGVLMVGPPGTGKTLLAKAIAGEA------ 69 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-------------CCCCEEEEECCTTSCHHHHHHHHHHHH------
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcC--------CCCCCeEEEECcCCCCHHHHHHHHHHHc------
Confidence 45678999999999999999998754 77888877665 5778899999999999999999999998
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhh---HHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l---~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+.+++.+++..+...+.|.....++.+|+.+.... ++++||||+|.+...++..+ .....+.++.++..++++..+
T Consensus 70 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 70 KVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp TCCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTTC-SEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred CCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHHcC-CeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 66799999999988889998899999999988665 48999999999988765432 122345678888889888777
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
.+++||++||.++.+++++++ ||+..++++.|+.++|.+|++.+++.+. ...+..++..+.||+++||..+|+.|
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a 228 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEA 228 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHH
Confidence 899999999999999999998 9999999999999999999999887643 23467788999999999999999999
Q ss_pred HHHHHH
Q 047219 505 ERSWAS 510 (567)
Q Consensus 505 ~~~a~~ 510 (567)
...+..
T Consensus 229 ~~~a~~ 234 (257)
T 1lv7_A 229 ALFAAR 234 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=5.6e-26 Score=226.76 Aligned_cols=222 Identities=32% Similarity=0.546 Sum_probs=184.3
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|++++|+++++.++++.+.. +.++..++.++ ...+++++|+||||||||++++++++.+
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~--------~~~~~g~ll~G~~G~GKTtl~~~i~~~~------ 73 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMG--------ARIPKGVLLVGPPGVGKTHLARAVAGEA------ 73 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTT--------CCCCSEEEEECCTTSSHHHHHHHHHHHT------
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcC--------CCCCCeEEEECCCCCCHHHHHHHHHHHh------
Confidence 45779999999999999999987754 56777777665 5677889999999999999999999998
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+.+++.+++..+...+.+.....++.+|+.+.... ++++|+||||.+...+... ......+.++.++..+++....
T Consensus 74 ~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 74 RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp TCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSS-SEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 56789999999888888888888899999887554 4899999999997665421 1223456678888888887777
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
..++++++||.++.+++++++ ||+..++++.|+.++|.+|++.+++.+. ..++..++..+.|++++||+.+|+.|
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a 232 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 232 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 789999999999999999998 8999999999999999999998887643 22578899999999999999999998
Q ss_pred HHHHHH
Q 047219 505 ERSWAS 510 (567)
Q Consensus 505 ~~~a~~ 510 (567)
...+..
T Consensus 233 ~~~a~~ 238 (254)
T 1ixz_A 233 ALLAAR 238 (254)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 25
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=6.4e-27 Score=255.73 Aligned_cols=219 Identities=32% Similarity=0.547 Sum_probs=188.6
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
+.++|++|+|++++++++++.+. .+.+++.|+.++ ...++++||+||||||||+||++||.++ +.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg--------~~ip~GvLL~GppGtGKTtLaraIa~~~------~~ 90 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMG--------ARIPKGVLLVGPPGVGKTHLARAVAGEA------RV 90 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-HHHCGGGTTTTS--------CCCCSEEEEECSSSSSHHHHHHHHHHHT------TC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-Hhhchhhhhhcc--------CCCCceEEEECCCCCCHHHHHHHHHHHh------CC
Confidence 67899999999999999999875 467788777665 6778899999999999999999999998 67
Q ss_pred CeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCcccCCc
Q 047219 355 PLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 355 ~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
++++++++++...+.|.....++.+|+.+.... ++++||||||.+...++.. ......+.+++++..+++......
T Consensus 91 ~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~-p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~ 169 (499)
T 2dhr_A 91 PFITASGSDFVEMFVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA 169 (499)
T ss_dssp CEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSS-SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCC
T ss_pred CEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcC-CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCcc
Confidence 899999999998888988888999999887655 4999999999998766531 123445678899999998887788
Q ss_pred EEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
+++|++||+++.+|++|++ ||+..+.|+.|+.++|.+|++.+++.+. ..++..++..+.|++++||+++|++|..
T Consensus 170 viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~ 249 (499)
T 2dhr_A 170 IVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAAL 249 (499)
T ss_dssp CEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHH
T ss_pred EEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999998 8999999999999999999998876542 2357889999999999999999999886
Q ss_pred HHH
Q 047219 507 SWA 509 (567)
Q Consensus 507 ~a~ 509 (567)
.+.
T Consensus 250 ~A~ 252 (499)
T 2dhr_A 250 LAA 252 (499)
T ss_dssp HHT
T ss_pred HHH
Confidence 554
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=1.3e-24 Score=220.32 Aligned_cols=222 Identities=32% Similarity=0.546 Sum_probs=183.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|++|+|++++++++++.+.. +..+..++.++ ...+++++|+||||||||+++++|+..+
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~--------~~~~~gvll~Gp~GtGKTtl~~~i~~~~------ 97 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMG--------ARIPKGVLLVGPPGVGKTHLARAVAGEA------ 97 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTT--------CCCCCEEEEECCTTSSHHHHHHHHHHHT------
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcC--------CCCCCeEEEECCCcChHHHHHHHHHHHc------
Confidence 34779999999999999999987754 56677777664 5667789999999999999999999998
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhh---hHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSE---MHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~---l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
...++.+++..+...+.+.....+..+|+.+.... ++++|+||||.+...+... ......+.+..++..+++....
T Consensus 98 ~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 98 RVPFITASGSDFVEMFVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp TCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSC-SEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred CCCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcC-CcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 56789999998888888888888889999887555 4899999999987654321 1223456677888888887777
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
..++++++||.++.+++++++ ||+..++|+.|+.++|.+|++.+++.+. ...+..++..+.|++++||+.+|+.|
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a 256 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEA 256 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 789999999999999999998 8999999999999999999998887642 23578899999999999999999998
Q ss_pred HHHHHH
Q 047219 505 ERSWAS 510 (567)
Q Consensus 505 ~~~a~~ 510 (567)
...+..
T Consensus 257 ~~~a~~ 262 (278)
T 1iy2_A 257 ALLAAR 262 (278)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 865543
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=1.9e-27 Score=238.86 Aligned_cols=220 Identities=31% Similarity=0.540 Sum_probs=177.2
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|++|+|++++++.+++.+.. +.+++.|..++ ...++++||+||||||||++|+++|+++
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~--------~~~~~~vll~G~~GtGKT~la~~la~~~------ 68 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLG--------AKIPKGVLLVGPPGTGKTLLAKAVAGEA------ 68 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHS--------CCCCSCCCCBCSSCSSHHHHHHHHHHHH------
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCC--------CCCCceEEEECCCCCcHHHHHHHHHHHh------
Confidence 45678999999999999999998764 78999998876 6778899999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhH----HHHHHHHHHHHHhhcCccc
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMH----EATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~----~~~~~vl~~LL~~ld~~~~ 428 (567)
+.+++.+++..+.+.+.|.....++.+|..+.... +++|||||+|.|...++.... ....+.++.|+..+++...
T Consensus 69 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 69 HVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQA-PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp TCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHHHSC-SCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred CCCEEEechHHHHHhhcchHHHHHHHHHHHHHhcC-CeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 66788888888888888877767777888887765 499999999999876432110 0011234566777766543
Q ss_pred -CCcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHH
Q 047219 429 -DKKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQ 502 (567)
Q Consensus 429 -~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~ 502 (567)
..+++||+|||.++.+++++++ ||+..++++.|+.++|.++++.+++.+. ...+..++..+.|++++||+.+|+
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~ 227 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIIN 227 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHH
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHH
Confidence 3469999999999999999999 9999999999999999999998887642 224677888899999999999999
Q ss_pred HHHHHH
Q 047219 503 QAERSW 508 (567)
Q Consensus 503 ~a~~~a 508 (567)
.|...+
T Consensus 228 ~a~~~a 233 (268)
T 2r62_A 228 EAALLA 233 (268)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 987644
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.92 E-value=9.5e-28 Score=277.03 Aligned_cols=226 Identities=31% Similarity=0.573 Sum_probs=193.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.++|++++|++++++.|.+.+.+++.+++.|..++ ..++.++||+||||||||++|+++|+++
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~--------~~~~~~vLL~GppGtGKT~Lakala~~~------ 535 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG--------MTPSKGVLFYGPPGCGKTLLAKAIANEC------ 535 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCC--------CCCCCCCCCBCCTTSSHHHHHHHHHHHH------
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcC--------CCCCceeEEECCCCCCHHHHHHHHHHHh------
Confidence 45788999999999999999999999999998887654 6788999999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhh---hhHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDS---EMHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~---~l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+.+++.++++.+.++|+|+.+..++.+|+.+....+ +||||||||.|...+.. .......+++++|+..|++....
T Consensus 536 ~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p-~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~ 614 (806)
T 1ypw_A 536 QANFISIKGPELLTMWFGESEANVREIFDKARQAAP-CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp TCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCS-BCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----
T ss_pred CCCEEEEechHhhhhhcCccHHHHHHHHHHHHhcCC-eEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc
Confidence 667999999999999999999999999999988764 99999999999877653 23446678999999999998888
Q ss_pred CcEEEEEeeCCCCCCChHHHh--ccceEEEecCCCHHHHHHHHHHHHHhhCHH---HHHHHHHhccCCCHHHHHHHHHHH
Q 047219 430 KKVVVIAATNRKQDLDPALIS--RFDSMITFGLPDHENRQEIAAQYAKHLTKA---ELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 430 ~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~~P~~~eR~eIL~~~~~~~~~~---~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
.+++||+|||+++.+++++++ ||+..++|+.|+.++|.+|++.+++..... ++..++..+.||+++||+.+|++|
T Consensus 615 ~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a 694 (806)
T 1ypw_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRA 694 (806)
T ss_dssp -CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHH
T ss_pred CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHH
Confidence 899999999999999999999 999999999999999999999888664322 466788889999999999999999
Q ss_pred HHHHHHHHH
Q 047219 505 ERSWASKII 513 (567)
Q Consensus 505 ~~~a~~r~i 513 (567)
++.+.++.+
T Consensus 695 ~~~a~~~~~ 703 (806)
T 1ypw_A 695 CKLAIRESI 703 (806)
T ss_dssp HHHHHSCC-
T ss_pred HHHHHHHHH
Confidence 988877643
No 29
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=1.6e-21 Score=199.25 Aligned_cols=221 Identities=22% Similarity=0.293 Sum_probs=171.7
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC-CCCCcCeEE
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM-PWQGVPLMY 358 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~-~~~~~~~~~ 358 (567)
.+|+|++++++.|.+.+..+. .+..++..|.. ...++.++||+||||||||++|+++++.+... .....++++
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~-----~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~ 104 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLL-VERARQKLGLA-----HETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVS 104 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCC-----SSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEE
T ss_pred HHccChHHHHHHHHHHHHHHH-hHHHHHHcCCC-----CCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEE
Confidence 379999999999999887654 35666655422 13556789999999999999999999988433 222457999
Q ss_pred echhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEee
Q 047219 359 VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAAT 438 (567)
Q Consensus 359 i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaT 438 (567)
+++..+.+.++|.....+..+|..+. +++|||||+|.|...++... ...+.++.|+..++. ...++++|++|
T Consensus 105 ~~~~~l~~~~~g~~~~~~~~~~~~~~----~~vl~iDEid~l~~~~~~~~--~~~~~~~~Ll~~l~~--~~~~~~~i~~~ 176 (309)
T 3syl_A 105 VTRDDLVGQYIGHTAPKTKEVLKRAM----GGVLFIDEAYYLYRPDNERD--YGQEAIEILLQVMEN--NRDDLVVILAG 176 (309)
T ss_dssp ECGGGTCCSSTTCHHHHHHHHHHHHT----TSEEEEETGGGSCCCC---C--CTHHHHHHHHHHHHH--CTTTCEEEEEE
T ss_pred EcHHHhhhhcccccHHHHHHHHHhcC----CCEEEEEChhhhccCCCccc--ccHHHHHHHHHHHhc--CCCCEEEEEeC
Confidence 99999999999998888888888774 68999999999975543211 123455677777774 34678999999
Q ss_pred CCCC-----CCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHh-------ccCCCHHHHHHHHH
Q 047219 439 NRKQ-----DLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATA-------TEEMSGRDIRDVCQ 502 (567)
Q Consensus 439 N~~~-----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~-------t~g~s~~dL~~L~~ 502 (567)
|... .++++|++||+..++|+.|+.+++.+|++.++.. +..+.+..++.. .+..+.+++++++.
T Consensus 177 ~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~ 256 (309)
T 3syl_A 177 YADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALD 256 (309)
T ss_dssp CHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHH
T ss_pred ChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHH
Confidence 8643 3579999999999999999999999999998874 456666766665 34456899999999
Q ss_pred HHHHHHHHHHHh
Q 047219 503 QAERSWASKIIR 514 (567)
Q Consensus 503 ~a~~~a~~r~i~ 514 (567)
.+...+..+++.
T Consensus 257 ~a~~~~~~r~~~ 268 (309)
T 3syl_A 257 RARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999888888775
No 30
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.87 E-value=7.9e-23 Score=210.50 Aligned_cols=245 Identities=18% Similarity=0.223 Sum_probs=159.4
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC--CCCCcCeE
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM--PWQGVPLM 357 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~--~~~~~~~~ 357 (567)
++|+|.+..++.+.+.+... ...+.+|||+||||||||++|++||+.+.+. +|+.++|.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~-------------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV-------------------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA 62 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH-------------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred CCcEECCHHHHHHHHHHHHH-------------------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence 46899999999999988765 4567899999999999999999999988643 33333333
Q ss_pred EechhhHHhhhhchhHH-------HHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc----
Q 047219 358 YVPLEVVMSKYYGESER-------LLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---- 426 (567)
Q Consensus 358 ~i~~~~l~s~~~G~~~~-------~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~---- 426 (567)
.++...+.+.+||+... .....|..+. +++|||||||.|....|. .|+..++..
T Consensus 63 ~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~----~g~L~LDEi~~l~~~~q~-----------~Ll~~l~~~~~~~ 127 (304)
T 1ojl_A 63 ALNESLLESELFGHEKGAFTGADKRREGRFVEAD----GGTLFLDEIGDISPLMQV-----------RLLRAIQEREVQR 127 (304)
T ss_dssp SCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHT----TSEEEEESCTTCCHHHHH-----------HHHHHHHSSBCCB
T ss_pred CCChHHHHHHhcCccccccCchhhhhcCHHHhcC----CCEEEEeccccCCHHHHH-----------HHHHHHhcCEeee
Confidence 33444455566665211 1112344443 689999999999765433 333333322
Q ss_pred -----ccCCcEEEEEeeCCC-------CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh---------------CH
Q 047219 427 -----EQDKKVVVIAATNRK-------QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL---------------TK 479 (567)
Q Consensus 427 -----~~~~~viVIaaTN~~-------~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~---------------~~ 479 (567)
..+.+++||+|||.. +.|+++|++|| ..+.+..|++++|.+++..+++++ ..
T Consensus 128 ~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl-~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~ 206 (304)
T 1ojl_A 128 VGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRL-NVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTP 206 (304)
T ss_dssp TTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHH-SSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCH
T ss_pred cCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhc-CeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCH
Confidence 124579999999974 46899999999 588889999999888776655543 33
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhccccccCcccC--------CCcHHH-HHHHHHHHHHHHHHHHHHH
Q 047219 480 AELAELATATEEMSGRDIRDVCQQAERSWASKIIRGQITKDGEQAC--------LPPLQE-YIESATNRRRSLLDAAEQS 550 (567)
Q Consensus 480 ~~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r~i~~~i~~~~~~~~--------~~~l~e-~le~~e~~~~~li~~al~~ 550 (567)
+.++.+..+.+..+.++|++++..+...+.. ..++.+..... ...+.+ .++.+| +.+|..++.+
T Consensus 207 ~a~~~L~~~~wpGnvReL~~~l~~~~~~~~~----~~i~~~~l~~~~~~~~~~~~~~l~~~~~~~~e---~~~i~~~l~~ 279 (304)
T 1ojl_A 207 QAMDLLIHYDWPGNIRELENAIERAVVLLTG----EYISERELPLAIAATPIKTEYSGEIQPLVDVE---KEVILAALEK 279 (304)
T ss_dssp HHHHHHHHCCCSSHHHHHHHHHHHHHHHCCS----SSBCGGGSCGGGC-------CCSSCCCHHHHH---HHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHhCCC----CcccHHhhhhhhccCCCccCCCcchhhHHHHH---HHHHHHHHHH
Confidence 4555555555555555666665555432111 11211110000 001111 344455 8999999999
Q ss_pred HhhHHhhhhccCCCCC
Q 047219 551 HQNINNHRTKKQPLDL 566 (567)
Q Consensus 551 ~~~~~s~~~~~~~l~~ 566 (567)
++++++++++.+++|.
T Consensus 280 ~~gn~~~aA~~Lgi~r 295 (304)
T 1ojl_A 280 TGGNKTEAARQLGITR 295 (304)
T ss_dssp TTTCHHHHHHHHTSCH
T ss_pred cCCCHHHHHHHHCcCH
Confidence 9999999999888874
No 31
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=6.5e-21 Score=195.08 Aligned_cols=171 Identities=16% Similarity=0.236 Sum_probs=126.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHH----hcCCCCcEEEE
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLA----NELPNGAIIFL 394 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A----~~~a~~~ILfI 394 (567)
...|.++|||||||||||++|++||+++ +.+++.++++.+.+++.|+.+..++.+|..+ +... ++||||
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~-~~vl~i 105 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGN-MCCLFI 105 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSS-CCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCC-CeEEEE
Confidence 6778999999999999999999999999 7889999999999999999999999999988 3333 699999
Q ss_pred cCcchhhhhhhhhhH--HHHHHHHHHHHHhhcCcc-----------cCCcEEEEEeeCCCCCCChHHHh--ccceEEEec
Q 047219 395 DEVDSFAVARDSEMH--EATRRILSVLLRQIDGFE-----------QDKKVVVIAATNRKQDLDPALIS--RFDSMITFG 459 (567)
Q Consensus 395 DEID~L~~~~q~~l~--~~~~~vl~~LL~~ld~~~-----------~~~~viVIaaTN~~~~Ld~aL~s--Rf~~~I~i~ 459 (567)
||||.+.+....... ...+++.+.|+..+++.. ...+++||+|||.++.++++|++ ||+..+.
T Consensus 106 DEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~-- 183 (293)
T 3t15_A 106 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 183 (293)
T ss_dssp ECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--
T ss_pred echhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--
Confidence 999999875442211 123456678888876332 45689999999999999999997 8977776
Q ss_pred CCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHH
Q 047219 460 LPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRD 499 (567)
Q Consensus 460 ~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~ 499 (567)
.|+.++|.+|++.++.... -..+.++..+.+|++++|..
T Consensus 184 ~P~~~~r~~Il~~~~~~~~-~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 184 APTREDRIGVCTGIFRTDN-VPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp CCCHHHHHHHHHHHHGGGC-CCHHHHHHHHHHSCSCCHHH
T ss_pred CcCHHHHHHHHHHhccCCC-CCHHHHHHHhCCCCcccHHH
Confidence 5899999999998775421 12556667778888888764
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.82 E-value=8.8e-19 Score=181.51 Aligned_cols=191 Identities=18% Similarity=0.283 Sum_probs=144.6
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
..+.+|++++|++..++.+...+...... ..++.++||+||||||||++|+++|+.+ +
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~----------------~~~~~~vll~G~~GtGKT~la~~ia~~~------~ 80 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKR----------------NECLDHILFSGPAGLGKTTLANIISYEM------S 80 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHT----------------TSCCCCEEEECSTTSSHHHHHHHHHHHT------T
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhc----------------CCCCCeEEEECcCCCCHHHHHHHHHHHh------C
Confidence 34458999999999999999988754211 3567789999999999999999999998 6
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc------
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE------ 427 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~------ 427 (567)
.+++.+++..+.. ...+...+. ..+.+++|||||||.+....+..+ +..++...
T Consensus 81 ~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~vl~lDEi~~l~~~~~~~L-----------l~~l~~~~~~~~~~ 140 (338)
T 3pfi_A 81 ANIKTTAAPMIEK------SGDLAAILT---NLSEGDILFIDEIHRLSPAIEEVL-----------YPAMEDYRLDIIIG 140 (338)
T ss_dssp CCEEEEEGGGCCS------HHHHHHHHH---TCCTTCEEEEETGGGCCHHHHHHH-----------HHHHHTSCC-----
T ss_pred CCeEEecchhccc------hhHHHHHHH---hccCCCEEEEechhhcCHHHHHHH-----------HHHHHhccchhhcc
Confidence 6788888875531 122333333 334579999999999975544333 33332211
Q ss_pred ----------cCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCC
Q 047219 428 ----------QDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMS 493 (567)
Q Consensus 428 ----------~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s 493 (567)
...++++|++||....++++|++||+..++|+.|+.+++.+++...+.. +..+.++.++..+ +.+
T Consensus 141 ~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~-~G~ 219 (338)
T 3pfi_A 141 SGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRS-RST 219 (338)
T ss_dssp ----CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTT-TTC
T ss_pred cCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-CcC
Confidence 0125899999999999999999999999999999999999999988875 5677888888854 456
Q ss_pred HHHHHHHHHHHHHH
Q 047219 494 GRDIRDVCQQAERS 507 (567)
Q Consensus 494 ~~dL~~L~~~a~~~ 507 (567)
.+.+.+++..++..
T Consensus 220 ~r~l~~~l~~~~~~ 233 (338)
T 3pfi_A 220 PRIALRLLKRVRDF 233 (338)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888877543
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.81 E-value=1e-18 Score=179.42 Aligned_cols=189 Identities=20% Similarity=0.310 Sum_probs=141.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
.+.+|++++|.+..++.+.+.+...... ...+.++||+||||||||++|+++|+.+ +.
T Consensus 7 ~p~~~~~~ig~~~~~~~l~~~l~~~~~~----------------~~~~~~vll~G~~GtGKT~la~~i~~~~------~~ 64 (324)
T 1hqc_A 7 RPKTLDEYIGQERLKQKLRVYLEAAKAR----------------KEPLEHLLLFGPPGLGKTTLAHVIAHEL------GV 64 (324)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHHHHH----------------CSCCCCCEEECCTTCCCHHHHHHHHHHH------TC
T ss_pred CcccHHHhhCHHHHHHHHHHHHHHHHcc----------------CCCCCcEEEECCCCCCHHHHHHHHHHHh------CC
Confidence 4458999999999999999887643110 3456899999999999999999999999 66
Q ss_pred CeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc-------
Q 047219 355 PLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE------- 427 (567)
Q Consensus 355 ~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~------- 427 (567)
+++.+++..+.. ...+...|.. ..+.+++|||||||.+....+..+ +..++...
T Consensus 65 ~~~~~~~~~~~~------~~~l~~~l~~--~~~~~~~l~lDEi~~l~~~~~~~L-----------~~~l~~~~~~~v~~~ 125 (324)
T 1hqc_A 65 NLRVTSGPAIEK------PGDLAAILAN--SLEEGDILFIDEIHRLSRQAEEHL-----------YPAMEDFVMDIVIGQ 125 (324)
T ss_dssp CEEEECTTTCCS------HHHHHHHHTT--TCCTTCEEEETTTTSCCHHHHHHH-----------HHHHHHSEEEECCSS
T ss_pred CEEEEeccccCC------hHHHHHHHHH--hccCCCEEEEECCcccccchHHHH-----------HHHHHhhhhHHhccc
Confidence 788888765532 1122222222 134579999999999975543332 22222211
Q ss_pred ---------cCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCH
Q 047219 428 ---------QDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSG 494 (567)
Q Consensus 428 ---------~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~ 494 (567)
...++++|++||.++.++++|++||+..+.++.|+.+++.+++..++.. +..+.++.++..+.| ++
T Consensus 126 ~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~ 204 (324)
T 1hqc_A 126 GPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TM 204 (324)
T ss_dssp SSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CH
T ss_pred cccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CH
Confidence 1136899999999999999999999889999999999999999988764 567788888888755 67
Q ss_pred HHHHHHHHHHH
Q 047219 495 RDIRDVCQQAE 505 (567)
Q Consensus 495 ~dL~~L~~~a~ 505 (567)
+.+..++..++
T Consensus 205 r~l~~~l~~~~ 215 (324)
T 1hqc_A 205 RVAKRLFRRVR 215 (324)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888887765
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.80 E-value=1.4e-21 Score=212.08 Aligned_cols=203 Identities=21% Similarity=0.243 Sum_probs=135.8
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+...|++|+|++++++.+.+.+.... . +..+++++||+||||||||++|+++|++++.
T Consensus 30 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~-~---------------~~~~~~~iLl~GppGtGKT~la~ala~~l~~---- 89 (456)
T 2c9o_A 30 GLAKQAASGLVGQENAREACGVIVELIK-S---------------KKMAGRAVLLAGPPGTGKTALALAIAQELGS---- 89 (456)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHHH-T---------------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCT----
T ss_pred cChhhchhhccCHHHHHHHHHHHHHHHH-h---------------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCC----
Confidence 4566789999999999999988775431 1 1456789999999999999999999999943
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHH---hcCCCCcEEEEcCcchhhhhhhhhhHHHH----HH-----------
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLA---NELPNGAIIFLDEVDSFAVARDSEMHEAT----RR----------- 414 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A---~~~a~~~ILfIDEID~L~~~~q~~l~~~~----~~----------- 414 (567)
..+|+.++++++.++++|+++. +...|..+ +... +++|||||||.+.+++........ .+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~~~~~~-~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~ 167 (456)
T 2c9o_A 90 KVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIGLRIKE-TKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGT 167 (456)
T ss_dssp TSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEEEEEEE-EEEEEEEEEEEEEEC--------------CEEEEEEETTEE
T ss_pred CceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHhhhhcC-CcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccc
Confidence 2789999999999999999987 89999998 5454 599999999999988755421111 00
Q ss_pred ----HHHHHHHhhc--CcccCCcEEEEEeeCCCCCCChHHHh--ccce--EEEecCC--CHHHHHHHHHHHHHhhCHHHH
Q 047219 415 ----ILSVLLRQID--GFEQDKKVVVIAATNRKQDLDPALIS--RFDS--MITFGLP--DHENRQEIAAQYAKHLTKAEL 482 (567)
Q Consensus 415 ----vl~~LL~~ld--~~~~~~~viVIaaTN~~~~Ld~aL~s--Rf~~--~I~i~~P--~~~eR~eIL~~~~~~~~~~~l 482 (567)
+...++..++ +......++|++|||+++.+++++++ ||+. .+.++.| +.++|.+|++.++ ..++
T Consensus 168 ~~~~~~~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~----~~dl 243 (456)
T 2c9o_A 168 KQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT----LHDL 243 (456)
T ss_dssp EEEEECHHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE----HHHH
T ss_pred hhHhhhHHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH----HHHH
Confidence 1112333333 22233335555888999999999976 9988 5667777 4577888776443 3478
Q ss_pred HHHHHhccCCCHHHHHHHHHH
Q 047219 483 AELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 483 ~~la~~t~g~s~~dL~~L~~~ 503 (567)
+.++..+.| ++|+.++|..
T Consensus 244 ~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 244 DVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp HHTC-----------------
T ss_pred HHHHHhCCC--hhHHHHHHhh
Confidence 888888888 9999999854
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.80 E-value=6.9e-19 Score=179.03 Aligned_cols=216 Identities=20% Similarity=0.350 Sum_probs=148.8
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
++|+|++++++.+...+..+..++.+...+. ....+.++||+||||||||++|+++|+.+ +.+++.+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~-------~~~~~~~vll~G~~GtGKT~la~~la~~l------~~~~~~i 81 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLR-------HEVTPKNILMIGPTGVGKTEIARRLAKLA------NAPFIKV 81 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHH-------HHCCCCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEE
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhccccc-------ccCCCceEEEECCCCCCHHHHHHHHHHHh------CCCEEEE
Confidence 4699999999999998876544443332221 13467899999999999999999999999 6679999
Q ss_pred chhhHHh-hhhchh-HHHHHHHHHHHh----cCCCCcEEEEcCcchhhhhhhhhhHHHH-HHHHHHHHHhhcCcc-----
Q 047219 360 PLEVVMS-KYYGES-ERLLGKVFSLAN----ELPNGAIIFLDEVDSFAVARDSEMHEAT-RRILSVLLRQIDGFE----- 427 (567)
Q Consensus 360 ~~~~l~s-~~~G~~-~~~l~~~f~~A~----~~a~~~ILfIDEID~L~~~~q~~l~~~~-~~vl~~LL~~ld~~~----- 427 (567)
++..+.. .++|.. ...+..++..+. ...+++||||||+|.+....+....... ..+.+.|+..+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~ 161 (310)
T 1ofh_A 82 EATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH 161 (310)
T ss_dssp EGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETT
T ss_pred cchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEeccc
Confidence 9988765 455542 234555554220 0012589999999999876532222222 234567777777532
Q ss_pred ---cCCcEEEEEee----CCCCCCChHHHhccceEEEecCCCHHHHHHHHHH----HHH-------------hhCHHHHH
Q 047219 428 ---QDKKVVVIAAT----NRKQDLDPALISRFDSMITFGLPDHENRQEIAAQ----YAK-------------HLTKAELA 483 (567)
Q Consensus 428 ---~~~~viVIaaT----N~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~----~~~-------------~~~~~~l~ 483 (567)
...++++|+++ +.+..++++|++||+..++|+.|+.+++.+|++. +.. .+..+.++
T Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (310)
T 1ofh_A 162 GMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVK 241 (310)
T ss_dssp EEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHH
T ss_pred ccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHH
Confidence 23578889885 5677899999999988899999999999999983 111 14455566
Q ss_pred HHHHhcc-------CCCHHHHHHHHHHHHHHH
Q 047219 484 ELATATE-------EMSGRDIRDVCQQAERSW 508 (567)
Q Consensus 484 ~la~~t~-------g~s~~dL~~L~~~a~~~a 508 (567)
.++...+ +.+.+.+..++..+...+
T Consensus 242 ~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~ 273 (310)
T 1ofh_A 242 KIAEAAFRVNEKTENIGARRLHTVMERLMDKI 273 (310)
T ss_dssp HHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHH
T ss_pred HHHHHhhhhcccccccCcHHHHHHHHHHHHhh
Confidence 6666553 355666666666655443
No 36
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.79 E-value=3.3e-18 Score=178.91 Aligned_cols=203 Identities=18% Similarity=0.213 Sum_probs=142.1
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..|..+|++++|++.+++.+...+... .. +..+++++||+||||||||++|+++++.+..
T Consensus 37 ~~p~~~~~~ivG~~~~~~~l~~l~~~~-~~---------------~~~~~~~vLl~GppGtGKT~la~~la~~l~~---- 96 (368)
T 3uk6_A 37 LEPRQASQGMVGQLAARRAAGVVLEMI-RE---------------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGP---- 96 (368)
T ss_dssp SCBCSEETTEESCHHHHHHHHHHHHHH-HT---------------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCS----
T ss_pred cCcCcchhhccChHHHHHHHHHHHHHH-Hc---------------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcc----
Confidence 345567999999999998876655332 11 1344689999999999999999999999954
Q ss_pred CcCeEEechhhHHhhhhc-------------------------------------------------hhHHHHHHHHHHH
Q 047219 353 GVPLMYVPLEVVMSKYYG-------------------------------------------------ESERLLGKVFSLA 383 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G-------------------------------------------------~~~~~l~~~f~~A 383 (567)
..+++.+++..+.+.+.+ +....++..+..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 176 (368)
T 3uk6_A 97 DTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAK 176 (368)
T ss_dssp SCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHH
T ss_pred cCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHH
Confidence 345666665443222211 1122334444333
Q ss_pred hc----CC----CCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEee-----------CCCCCC
Q 047219 384 NE----LP----NGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAAT-----------NRKQDL 444 (567)
Q Consensus 384 ~~----~a----~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaT-----------N~~~~L 444 (567)
.. .. .++||||||+|.|... .++.|++.++.. ...++++++. |.+..+
T Consensus 177 ~~~~~~~g~~~~~~~vl~IDEi~~l~~~-----------~~~~L~~~le~~--~~~~~ii~t~~~~~~i~~t~~~~~~~l 243 (368)
T 3uk6_A 177 VAEWREEGKAEIIPGVLFIDEVHMLDIE-----------SFSFLNRALESD--MAPVLIMATNRGITRIRGTSYQSPHGI 243 (368)
T ss_dssp HHHHHHHTC---CBCEEEEESGGGSBHH-----------HHHHHHHHTTCT--TCCEEEEEESCSEEECBTSSCEEETTC
T ss_pred HHHhhhhccccccCceEEEhhccccChH-----------HHHHHHHHhhCc--CCCeeeeecccceeeeeccCCCCcccC
Confidence 21 11 1379999999999633 345566666543 2345554443 347789
Q ss_pred ChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 047219 445 DPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAERSWA 509 (567)
Q Consensus 445 d~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~~a~ 509 (567)
+++|++|| ..+.|+.|+.+++.++++..+.. +..+.++.++..+.+.+++++..++..+...+.
T Consensus 244 ~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~ 311 (368)
T 3uk6_A 244 PIDLLDRL-LIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCR 311 (368)
T ss_dssp CHHHHTTE-EEEEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHhhc-cEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999 55899999999999999988875 677889999999886789999999998876543
No 37
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.79 E-value=1e-18 Score=178.39 Aligned_cols=208 Identities=22% Similarity=0.274 Sum_probs=144.2
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
++++|++.+++.+...+......- . ....+..++||+||||||||++|+++|+.+... +.+++.+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~------~------~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~---~~~~~~~ 81 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL------K------DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMIRI 81 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC------S------CTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC---GGGEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC------C------CCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC---CcceEEe
Confidence 468999999999999887541110 0 002344689999999999999999999998543 4567888
Q ss_pred chhhHH-----hhhhchhHH----HHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc---
Q 047219 360 PLEVVM-----SKYYGESER----LLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE--- 427 (567)
Q Consensus 360 ~~~~l~-----s~~~G~~~~----~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~--- 427 (567)
++..+. ..++|.... .....+..+....++++|||||+|.+....+ +.|+..++...
T Consensus 82 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~-----------~~Ll~~le~~~~~~ 150 (311)
T 4fcw_A 82 DMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVF-----------NILLQMLDDGRLTD 150 (311)
T ss_dssp EGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHH-----------HHHHHHHHHSEEEC
T ss_pred ecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHH-----------HHHHHHHhcCEEEc
Confidence 876543 233322100 0001222333334479999999999975433 34444443221
Q ss_pred ------cCCcEEEEEeeCC--------------------------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHH
Q 047219 428 ------QDKKVVVIAATNR--------------------------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 428 ------~~~~viVIaaTN~--------------------------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~ 475 (567)
.-.++++|+|||. .+.++++|++||+..+.+.+|+.+++.+|+..+++
T Consensus 151 ~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 151 SHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp TTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTH
T ss_pred CCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 1137789999998 55799999999999999999999999999998765
Q ss_pred h-------------hCHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHH
Q 047219 476 H-------------LTKAELAELATATE--EMSGRDIRDVCQQAERSWASKII 513 (567)
Q Consensus 476 ~-------------~~~~~l~~la~~t~--g~s~~dL~~L~~~a~~~a~~r~i 513 (567)
. +..+.++.++...+ ..+.++|++++..+...+..+.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 231 YLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 4 45567788888776 67888899999888876555544
No 38
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.78 E-value=2.2e-19 Score=180.01 Aligned_cols=191 Identities=19% Similarity=0.233 Sum_probs=121.5
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCe
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPL 356 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~ 356 (567)
.+|++++|.+..++.+.+.+... ...+.++||+||||||||++|+++|+.+... +.++
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~-------------------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~---~~~~ 60 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL-------------------APLDKPVLIIGERGTGKELIASRLHYLSSRW---QGPF 60 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH-------------------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTT---TSCE
T ss_pred cccccceeCCHHHHHHHHHHHHH-------------------hCCCCCEEEECCCCCcHHHHHHHHHHhcCcc---CCCe
Confidence 57899999999999999888754 3456799999999999999999999998643 4678
Q ss_pred EEechhhH-----HhhhhchhHHHHH-------HHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhc
Q 047219 357 MYVPLEVV-----MSKYYGESERLLG-------KVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQID 424 (567)
Q Consensus 357 ~~i~~~~l-----~s~~~G~~~~~l~-------~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld 424 (567)
++++|+.+ .+.++|....... ..+.. +.+++|||||||.+....|. .|+..++
T Consensus 61 ~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~----a~~~~l~lDEi~~l~~~~q~-----------~Ll~~l~ 125 (265)
T 2bjv_A 61 ISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFER----ADGGTLFLDELATAPMMVQE-----------KLLRVIE 125 (265)
T ss_dssp EEEEGGGSCHHHHHHHHHCCC---------CCCCHHHH----TTTSEEEEESGGGSCHHHHH-----------HHHHHHH
T ss_pred EEEecCCCChhHHHHHhcCCcccccccccccccchhhh----cCCcEEEEechHhcCHHHHH-----------HHHHHHH
Confidence 88888765 3334443221111 12222 23689999999999765433 3333333
Q ss_pred Cc---------ccCCcEEEEEeeCCC-------CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhh-----------
Q 047219 425 GF---------EQDKKVVVIAATNRK-------QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHL----------- 477 (567)
Q Consensus 425 ~~---------~~~~~viVIaaTN~~-------~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~----------- 477 (567)
.. ....++++|+|||.. ..++++|++|| ..+.+..|++++|.+++..+++++
T Consensus 126 ~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl-~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~ 204 (265)
T 2bjv_A 126 YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDAL-AFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLP 204 (265)
T ss_dssp HCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHH-CSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred hCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhh-cCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCC
Confidence 21 123578999999973 35899999999 457888899988877666554432
Q ss_pred -----CHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 478 -----TKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 478 -----~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
..+.++.+....+..+.++|++++..+.
T Consensus 205 ~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~ 237 (265)
T 2bjv_A 205 LFPGFTERARETLLNYRWPGNIRELKNVVERSV 237 (265)
T ss_dssp SCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHH
T ss_pred cccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3334444544444444555555555543
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.78 E-value=4e-18 Score=179.05 Aligned_cols=220 Identities=20% Similarity=0.327 Sum_probs=151.0
Q ss_pred cccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 281 NIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 281 dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
.|+|++.+++.+...+....... ...........++.++||+||||||||++|++||+.+ +.+|+.++
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~------~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~ 83 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRL------RNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL------DVPFTMAD 83 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHH------HTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEE
T ss_pred hccCHHHHHHHHHHHHHHHHhhh------ccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc------CCCEEEec
Confidence 47999999999999886432211 1000001112467899999999999999999999999 77899999
Q ss_pred hhhHHh-hhhchh-HHHHHHHHHHHh---cCCCCcEEEEcCcchhhhhhhhhh---HHHHHHHHHHHHHhhcCcc-----
Q 047219 361 LEVVMS-KYYGES-ERLLGKVFSLAN---ELPNGAIIFLDEVDSFAVARDSEM---HEATRRILSVLLRQIDGFE----- 427 (567)
Q Consensus 361 ~~~l~s-~~~G~~-~~~l~~~f~~A~---~~a~~~ILfIDEID~L~~~~q~~l---~~~~~~vl~~LL~~ld~~~----- 427 (567)
+..+.. .|+|+. ...+..+|..+. ..++++||||||||.+...+.... ....+++++.|+..+++..
T Consensus 84 ~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~ 163 (363)
T 3hws_A 84 ATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPP 163 (363)
T ss_dssp HHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC------
T ss_pred hHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccC
Confidence 998874 478875 556677776542 112368999999999987643321 1122346777888877421
Q ss_pred --------------cCCcEEEEEeeCCC----------CC-----------------------------------CChHH
Q 047219 428 --------------QDKKVVVIAATNRK----------QD-----------------------------------LDPAL 448 (567)
Q Consensus 428 --------------~~~~viVIaaTN~~----------~~-----------------------------------Ld~aL 448 (567)
...++++|+++|.. .. |+++|
T Consensus 164 ~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l 243 (363)
T 3hws_A 164 QGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEF 243 (363)
T ss_dssp ----------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHH
T ss_pred ccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHH
Confidence 22455666666542 11 89999
Q ss_pred HhccceEEEecCCCHHHHHHHHHH----HHHh-------------hCHHHHHHHHH--hccCCCHHHHHHHHHHHHHHHH
Q 047219 449 ISRFDSMITFGLPDHENRQEIAAQ----YAKH-------------LTKAELAELAT--ATEEMSGRDIRDVCQQAERSWA 509 (567)
Q Consensus 449 ~sRf~~~I~i~~P~~~eR~eIL~~----~~~~-------------~~~~~l~~la~--~t~g~s~~dL~~L~~~a~~~a~ 509 (567)
++||+..+.|.+|+.+++.+|+.. +.+. +..+.++.++. +.+.+..++|++++..+.....
T Consensus 244 ~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l 323 (363)
T 3hws_A 244 IGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTM 323 (363)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHH
T ss_pred hcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHH
Confidence 999999999999999999999886 3221 34556666664 4455667788888887776655
Q ss_pred HHH
Q 047219 510 SKI 512 (567)
Q Consensus 510 ~r~ 512 (567)
.+.
T Consensus 324 ~~~ 326 (363)
T 3hws_A 324 YDL 326 (363)
T ss_dssp HST
T ss_pred Hhc
Confidence 543
No 40
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.76 E-value=4e-18 Score=188.76 Aligned_cols=209 Identities=22% Similarity=0.273 Sum_probs=143.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
....+++++|++++++.+.+.+....... ..++.+++|+||||||||++|++||..+ +.
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~~---------------~~~g~~vll~Gp~GtGKTtlar~ia~~l------~~ 134 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLTK---------------SLKGPILCLAGPPGVGKTSLAKSIAKSL------GR 134 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHSS---------------SCCSCEEEEESSSSSSHHHHHHHHHHHH------TC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcc---------------cCCCCEEEEECCCCCCHHHHHHHHHHhc------CC
Confidence 34556889999999999987665321111 2256789999999999999999999999 55
Q ss_pred CeEEechhhHHh---------hhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcC
Q 047219 355 PLMYVPLEVVMS---------KYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG 425 (567)
Q Consensus 355 ~~~~i~~~~l~s---------~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~ 425 (567)
++..+++..+.. .+.|.....+...|..+... ++||||||||.+....+. ..++.|+..++.
T Consensus 135 ~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~--~~vl~lDEid~l~~~~~~-------~~~~~LL~~ld~ 205 (543)
T 3m6a_A 135 KFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKL--NPVFLLDEIDKMSSDFRG-------DPSSAMLEVLDP 205 (543)
T ss_dssp EEEEECCCC--------------------CHHHHHHTTCSS--SEEEEEEESSSCC----------------CCGGGTCT
T ss_pred CeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhhcc--CCEEEEhhhhhhhhhhcc-------CHHHHHHHHHhh
Confidence 677776654322 45566556666677766544 359999999999876432 134556666654
Q ss_pred ccc-------------CCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh--------------hC
Q 047219 426 FEQ-------------DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH--------------LT 478 (567)
Q Consensus 426 ~~~-------------~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~--------------~~ 478 (567)
... ..+++||+|||+++.++++|++|| ..++|+.|+.+++.+|+..++.. +.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~ 284 (543)
T 3m6a_A 206 EQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLR 284 (543)
T ss_dssp TTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEEC
T ss_pred hhcceeecccCCeeecccceEEEeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCC
Confidence 321 157899999999999999999999 68999999999999999987521 34
Q ss_pred HHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHHHHh
Q 047219 479 KAELAELAT-ATEEMSGRDIRDVCQQAERSWASKIIR 514 (567)
Q Consensus 479 ~~~l~~la~-~t~g~s~~dL~~L~~~a~~~a~~r~i~ 514 (567)
.+.+..+.. +++....++|++.+..+.+.++.+.+.
T Consensus 285 ~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~ 321 (543)
T 3m6a_A 285 DQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVA 321 (543)
T ss_dssp HHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHh
Confidence 566777655 555567788888877777766666554
No 41
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.75 E-value=3e-18 Score=196.93 Aligned_cols=204 Identities=19% Similarity=0.260 Sum_probs=145.2
Q ss_pred cccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEE
Q 047219 279 WENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMY 358 (567)
Q Consensus 279 ~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~ 358 (567)
.++++|++.+++.+.+.+......-. ....+..++||+||||||||++|+++|+.+... +.+|+.
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~------------~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~---~~~~i~ 554 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLK------------DPKRPIGSFIFLGPTGVGKTELARALAESIFGD---EESMIR 554 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCS------------CTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC---TTCEEE
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccC------------CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CcceEE
Confidence 46799999999999998875411100 001233479999999999999999999998543 568999
Q ss_pred echhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc---------ccC
Q 047219 359 VPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF---------EQD 429 (567)
Q Consensus 359 i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~---------~~~ 429 (567)
++++++...+... .. .+..+....+++||||||||.+.+.. ++.|++.++.. ...
T Consensus 555 i~~s~~~~~~~~~-~~----~l~~~~~~~~~~vl~lDEi~~~~~~~-----------~~~Ll~~le~g~~~~~~g~~~~~ 618 (758)
T 3pxi_A 555 IDMSEYMEKHSTS-GG----QLTEKVRRKPYSVVLLDAIEKAHPDV-----------FNILLQVLEDGRLTDSKGRTVDF 618 (758)
T ss_dssp EEGGGGCSSCCCC--------CHHHHHHCSSSEEEEECGGGSCHHH-----------HHHHHHHHHHSBCC-----CCBC
T ss_pred Eechhcccccccc-cc----hhhHHHHhCCCeEEEEeCccccCHHH-----------HHHHHHHhccCeEEcCCCCEecc
Confidence 9999988776554 11 12222233457999999999987543 34444444432 134
Q ss_pred CcEEEEEeeCCCCC------------CChHHHhccceEEEecCCCHHHHHHHHHHHHHh-------------hCHHHHHH
Q 047219 430 KKVVVIAATNRKQD------------LDPALISRFDSMITFGLPDHENRQEIAAQYAKH-------------LTKAELAE 484 (567)
Q Consensus 430 ~~viVIaaTN~~~~------------Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~-------------~~~~~l~~ 484 (567)
.++++|+|||.... |+|+|++||+..+.|++|+.+++.+|+..++.. +..+.++.
T Consensus 619 ~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~ 698 (758)
T 3pxi_A 619 RNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAK 698 (758)
T ss_dssp TTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHH
T ss_pred CCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHH
Confidence 57899999996443 899999999999999999999999999987754 34556777
Q ss_pred HHH--hccCCCHHHHHHHHHHHHHHHHHHHH
Q 047219 485 LAT--ATEEMSGRDIRDVCQQAERSWASKII 513 (567)
Q Consensus 485 la~--~t~g~s~~dL~~L~~~a~~~a~~r~i 513 (567)
++. +.+.+..++|+++++.+......+.+
T Consensus 699 l~~~~~~~~~~~R~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 699 VAEEGVDLEYGARPLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp HHGGGCCTTTTTTTHHHHHHHHTHHHHHHHH
T ss_pred HHHhCCCCCCCChHHHHHHHHHHHHHHHHHH
Confidence 765 55667888899888887765554443
No 42
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.75 E-value=1.2e-17 Score=171.97 Aligned_cols=171 Identities=19% Similarity=0.259 Sum_probs=126.0
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
..+.+|++++|+++.++.+++.+.. ...+..+|++||||||||++|+++++++ +
T Consensus 20 ~rP~~~~~ivg~~~~~~~l~~~l~~--------------------~~~~~~~L~~G~~G~GKT~la~~la~~l------~ 73 (324)
T 3u61_B 20 YRPSTIDECILPAFDKETFKSITSK--------------------GKIPHIILHSPSPGTGKTTVAKALCHDV------N 73 (324)
T ss_dssp SCCCSTTTSCCCHHHHHHHHHHHHT--------------------TCCCSEEEECSSTTSSHHHHHHHHHHHT------T
T ss_pred hCCCCHHHHhCcHHHHHHHHHHHHc--------------------CCCCeEEEeeCcCCCCHHHHHHHHHHHh------C
Confidence 3456899999999999999887752 4566788999999999999999999999 6
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHH-HhcC---CCCcEEEEcCcchhh-hhhhhhhHHHHHHHHHHHHHhhcCccc
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSL-ANEL---PNGAIIFLDEVDSFA-VARDSEMHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~-A~~~---a~~~ILfIDEID~L~-~~~q~~l~~~~~~vl~~LL~~ld~~~~ 428 (567)
.++++++++... ...++..+.. +... ..+.+|||||+|.+. ... .+.|+..++. .
T Consensus 74 ~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~-----------~~~L~~~le~--~ 133 (324)
T 3u61_B 74 ADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAES-----------QRHLRSFMEA--Y 133 (324)
T ss_dssp EEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHH-----------HHHHHHHHHH--H
T ss_pred CCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHH-----------HHHHHHHHHh--C
Confidence 778998876532 1223333332 2221 246899999999996 332 2344444442 2
Q ss_pred CCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh-----------hCH-HHHHHHHHhccC
Q 047219 429 DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH-----------LTK-AELAELATATEE 491 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~-----------~~~-~~l~~la~~t~g 491 (567)
+.++++|++||.+..++++|++|| ..++|+.|+.+++.+|++.+... +.. +.++.++..+.|
T Consensus 134 ~~~~~iI~~~n~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 207 (324)
T 3u61_B 134 SSNCSIIITANNIDGIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP 207 (324)
T ss_dssp GGGCEEEEEESSGGGSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS
T ss_pred CCCcEEEEEeCCccccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC
Confidence 357899999999999999999999 78999999999988877765443 233 566677776554
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.75 E-value=6.3e-18 Score=170.18 Aligned_cols=202 Identities=18% Similarity=0.247 Sum_probs=133.0
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeE
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLM 357 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~ 357 (567)
....++|+++.++.+.+..... .+.++.. +..++.++||+||||||||++|+++|+.+ +.+++
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l---~~~l~~~--------~~~~~~~vLl~G~~GtGKT~la~~ia~~~------~~~~~ 93 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELL---VQQTKNS--------DRTPLVSVLLEGPPHSGKTALAAKIAEES------NFPFI 93 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHH---HHHHHHC--------SSCSEEEEEEECSTTSSHHHHHHHHHHHH------TCSEE
T ss_pred HhcCCCCccHHHHHHHHHHHHH---HHHHhcc--------CCCCCeEEEEECCCCCcHHHHHHHHHHHh------CCCEE
Confidence 3457899999888777742211 0011111 14667899999999999999999999998 67788
Q ss_pred EechhhHHhhhhch----hHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc-cCCcE
Q 047219 358 YVPLEVVMSKYYGE----SERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE-QDKKV 432 (567)
Q Consensus 358 ~i~~~~l~s~~~G~----~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~-~~~~v 432 (567)
.+++.. .++|. ....++.+|..+.... +++|||||||.|...+... ......++..|...++... ...++
T Consensus 94 ~i~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~ 168 (272)
T 1d2n_A 94 KICSPD---KMIGFSETAKCQAMKKIFDDAYKSQ-LSCVVVDDIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKL 168 (272)
T ss_dssp EEECGG---GCTTCCHHHHHHHHHHHHHHHHTSS-EEEEEECCHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEE
T ss_pred EEeCHH---HhcCCchHHHHHHHHHHHHHHHhcC-CcEEEEEChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCE
Confidence 887764 33333 2355677888776544 5999999999995443211 0112334455666666543 34578
Q ss_pred EEEEeeCCCCCCCh-HHHhccceEEEecCCCHHHHHHHHHHHH--HhhCHHHHHHHHHhccCC----CHHHHHHHHHH
Q 047219 433 VVIAATNRKQDLDP-ALISRFDSMITFGLPDHENRQEIAAQYA--KHLTKAELAELATATEEM----SGRDIRDVCQQ 503 (567)
Q Consensus 433 iVIaaTN~~~~Ld~-aL~sRf~~~I~i~~P~~~eR~eIL~~~~--~~~~~~~l~~la~~t~g~----s~~dL~~L~~~ 503 (567)
++|+|||.++.+++ .+++||+..++++ +..+|.++...+. ..+..+.+..++..+.|+ +.+++.+++..
T Consensus 169 ~ii~ttn~~~~l~~~~l~~rf~~~i~~p--~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~ 244 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLNAFSTTIHVP--NIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEM 244 (272)
T ss_dssp EEEEEESCHHHHHHTTCTTTSSEEEECC--CEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred EEEEecCChhhcchhhhhcccceEEcCC--CccHHHHHHHHHHhcCCCCHHHHHHHHHHhcCCCccccHHHHHHHHHH
Confidence 89999999888887 6788997777774 4444444444333 236677888888888776 44455444443
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.74 E-value=8.3e-17 Score=166.07 Aligned_cols=197 Identities=18% Similarity=0.230 Sum_probs=134.3
Q ss_pred CCCCCccccc-C--cHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC
Q 047219 274 KSEISWENIA-G--YDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP 350 (567)
Q Consensus 274 ~~~~~~~dIi-G--~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~ 350 (567)
.+..+|++++ | ...+...++..+..+ ...+.+++|+||||||||++|+++++.+...
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~-------------------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~- 64 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL-------------------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR- 64 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT-------------------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc-------------------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-
Confidence 4567899997 4 444455554444321 2356799999999999999999999988433
Q ss_pred CCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 351 WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 351 ~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
+.+++++++..+...+.+.........|...... +++|||||+|.+..+.. ....++..++.....+
T Consensus 65 --~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~vL~iDEi~~l~~~~~---------~~~~l~~~l~~~~~~~ 131 (324)
T 1l8q_A 65 --GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKS--VDLLLLDDVQFLSGKER---------TQIEFFHIFNTLYLLE 131 (324)
T ss_dssp --TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHT--CSEEEEECGGGGTTCHH---------HHHHHHHHHHHHHHTT
T ss_pred --CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcC--CCEEEEcCcccccCChH---------HHHHHHHHHHHHHHCC
Confidence 4578999998887766554332222223332222 58999999999975311 1112222222222334
Q ss_pred cEEEEEeeCCCC---CCChHHHhccc--eEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHH
Q 047219 431 KVVVIAATNRKQ---DLDPALISRFD--SMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVC 501 (567)
Q Consensus 431 ~viVIaaTN~~~---~Ld~aL~sRf~--~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~ 501 (567)
..+|+++++.+. .++++|++||. ..+++++ +.+++.+++..++.. ++.+.++.++..+ .+.+++..++
T Consensus 132 ~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l 208 (324)
T 1l8q_A 132 KQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKI 208 (324)
T ss_dssp CEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHH
T ss_pred CeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHH
Confidence 566777777665 68999999996 5788988 999999999998864 5677888888888 4667777777
Q ss_pred HHHHH
Q 047219 502 QQAER 506 (567)
Q Consensus 502 ~~a~~ 506 (567)
..+..
T Consensus 209 ~~~~~ 213 (324)
T 1l8q_A 209 KLIKL 213 (324)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 45
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=5.3e-18 Score=158.63 Aligned_cols=166 Identities=20% Similarity=0.289 Sum_probs=119.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CC
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PW 351 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~ 351 (567)
+..|++++|.++.++.+.+.+. ...+.+++|+||||||||++|+++++.+... ..
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~---------------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~ 76 (195)
T 1jbk_A 18 QGKLDPVIGRDEEIRRTIQVLQ---------------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGL 76 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHT---------------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGG
T ss_pred hccccccccchHHHHHHHHHHh---------------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhh
Confidence 3578999999999998887653 3456789999999999999999999987421 11
Q ss_pred CCcCeEEechhhHH--hhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccC
Q 047219 352 QGVPLMYVPLEVVM--SKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 352 ~~~~~~~i~~~~l~--s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
.+.+++.+++..+. ..+.+.....+..++..+.....+.+|||||+|.+........... +.+.+...++ .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~---~~~~l~~~~~----~ 149 (195)
T 1jbk_A 77 KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD---AGNMLKPALA----R 149 (195)
T ss_dssp TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC---CHHHHHHHHH----T
T ss_pred cCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH---HHHHHHHhhc----c
Confidence 25678888888776 3455666677777877665554467999999999975432111001 1122222222 3
Q ss_pred CcEEEEEeeCCCC-----CCChHHHhccceEEEecCCCHHHHHHHH
Q 047219 430 KKVVVIAATNRKQ-----DLDPALISRFDSMITFGLPDHENRQEIA 470 (567)
Q Consensus 430 ~~viVIaaTN~~~-----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL 470 (567)
.++.+|++||.+. .+++++++||. .++++.|+.+++.+++
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 5678899998765 78999999995 7999999999998875
No 46
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.73 E-value=4.7e-17 Score=175.99 Aligned_cols=182 Identities=21% Similarity=0.290 Sum_probs=130.5
Q ss_pred CCCCCcccccCcHHHH---HHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC
Q 047219 274 KSEISWENIAGYDQQK---REIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP 350 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k---~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~ 350 (567)
..+.+|++++|++..+ +.++..+.. ....++||+||||||||++|++||+.+
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~---------------------~~~~~vLL~GppGtGKTtlAr~ia~~~---- 74 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEA---------------------GHLHSMILWGPPGTGKTTLAEVIARYA---- 74 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHH---------------------TCCCEEEEECSTTSSHHHHHHHHHHHT----
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHc---------------------CCCcEEEEECCCCCcHHHHHHHHHHHh----
Confidence 3446899999999999 777776652 233789999999999999999999999
Q ss_pred CCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc
Q 047219 351 WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE 427 (567)
Q Consensus 351 ~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~ 427 (567)
+.++..+++.... .+.++.+++.+.. ...++||||||||.|....|+. |+..++.
T Consensus 75 --~~~f~~l~a~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~-----------LL~~le~-- 132 (447)
T 3pvs_A 75 --NADVERISAVTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDA-----------FLPHIED-- 132 (447)
T ss_dssp --TCEEEEEETTTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------C-----------CHHHHHT--
T ss_pred --CCCeEEEEeccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHH-----------HHHHHhc--
Confidence 5668877764322 1234444444332 3346999999999997664443 4444442
Q ss_pred cCCcEEEEEee--CCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh-----------hCHHHHHHHHHhccCCCH
Q 047219 428 QDKKVVVIAAT--NRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH-----------LTKAELAELATATEEMSG 494 (567)
Q Consensus 428 ~~~~viVIaaT--N~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~-----------~~~~~l~~la~~t~g~s~ 494 (567)
+.+++|++| |....++++|++|| .++.|+.|+.+++..++...+.. +..+.++.++..+.| +.
T Consensus 133 --~~v~lI~att~n~~~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~ 208 (447)
T 3pvs_A 133 --GTITFIGATTENPSFELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DA 208 (447)
T ss_dssp --TSCEEEEEESSCGGGSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CH
T ss_pred --CceEEEecCCCCcccccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CH
Confidence 457777777 55668999999999 68999999999999999998764 456778888888544 56
Q ss_pred HHHHHHHHHHHH
Q 047219 495 RDIRDVCQQAER 506 (567)
Q Consensus 495 ~dL~~L~~~a~~ 506 (567)
+.+.+++..+..
T Consensus 209 R~lln~Le~a~~ 220 (447)
T 3pvs_A 209 RRALNTLEMMAD 220 (447)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666553
No 47
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.73 E-value=1.6e-18 Score=184.13 Aligned_cols=198 Identities=22% Similarity=0.280 Sum_probs=142.8
Q ss_pred cccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEE
Q 047219 279 WENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMY 358 (567)
Q Consensus 279 ~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~ 358 (567)
++.++|.+..++++.+.+... .....+|||+|++||||+++|+++|..+.+. ..+|+.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~-------------------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~---~~~fv~ 193 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI-------------------SCAECPVLITGESGVGKEVVARLIHKLSDRS---KEPFVA 193 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH-------------------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTT---TSCEEE
T ss_pred chhhhhccHHhhHHHHHHHHh-------------------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCC---CCCeEE
Confidence 457899999999998888754 5566789999999999999999999998654 345666
Q ss_pred echh-----hHHhhhhchhHHH-------HHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc
Q 047219 359 VPLE-----VVMSKYYGESERL-------LGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF 426 (567)
Q Consensus 359 i~~~-----~l~s~~~G~~~~~-------l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~ 426 (567)
++|. .+.+.+||+.... ....|+.| .+|+||||||+.|+...|..+.+++++ ..+.......
T Consensus 194 v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a----~~gtlfldei~~l~~~~q~~Ll~~l~~--~~~~~~g~~~ 267 (387)
T 1ny5_A 194 LNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELA----DGGTLFLDEIGELSLEAQAKLLRVIES--GKFYRLGGRK 267 (387)
T ss_dssp EETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHT----TTSEEEEESGGGCCHHHHHHHHHHHHH--SEECCBTCCS
T ss_pred EecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeC----CCcEEEEcChhhCCHHHHHHHHHHHhc--CcEEeCCCCc
Confidence 6654 4566677753321 11234433 379999999999988766665554433 1111112222
Q ss_pred ccCCcEEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHH
Q 047219 427 EQDKKVVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRD 499 (567)
Q Consensus 427 ~~~~~viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~ 499 (567)
....++++|+|||. .+.++++|++|+ ..+.+..|++++|.+++..+++++......++.....+++...+..
T Consensus 268 ~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~ 346 (387)
T 1ny5_A 268 EIEVNVRILAATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQEL 346 (387)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHH
T ss_pred eeeccEEEEEeCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHH
Confidence 33468999999997 567999999999 7888999999999999998888776555555554455677777777
Q ss_pred HHHHHH
Q 047219 500 VCQQAE 505 (567)
Q Consensus 500 L~~~a~ 505 (567)
|.++.|
T Consensus 347 l~~~~w 352 (387)
T 1ny5_A 347 LLSYPW 352 (387)
T ss_dssp HHHSCC
T ss_pred HHhCCC
Confidence 777776
No 48
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.73 E-value=3.8e-17 Score=187.59 Aligned_cols=205 Identities=20% Similarity=0.332 Sum_probs=142.6
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
++++|++++++.+...+..... | .. ....+..++||+||||||||++|+++|+.+ +.+++.+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~--------g--~~--~~~~p~~~~ll~G~~GtGKT~la~~la~~l------~~~~~~i 519 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARA--------G--LG--HEHKPVGSFLFAGPTGVGKTEVTVQLSKAL------GIELLRF 519 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHT--------T--CS--CTTSCSEEEEEECSTTSSHHHHHHHHHHHH------TCEEEEE
T ss_pred hhccCHHHHHHHHHHHHHHHhc--------c--cC--CCCCCceEEEEECCCCCcHHHHHHHHHHHh------cCCEEEE
Confidence 4689999999999887764310 0 00 002344579999999999999999999999 6679999
Q ss_pred chhhHHhh------------hhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc
Q 047219 360 PLEVVMSK------------YYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE 427 (567)
Q Consensus 360 ~~~~l~s~------------~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~ 427 (567)
+++++... |+|..+. +.+..... .++++||||||||.+.+. +++.|++.++...
T Consensus 520 ~~s~~~~~~~~~~l~g~~~g~~g~~~~--~~l~~~~~-~~~~~vl~lDEi~~~~~~-----------~~~~Ll~~le~~~ 585 (758)
T 1r6b_X 520 DMSEYMERHTVSRLIGAPPGYVGFDQG--GLLTDAVI-KHPHAVLLLDEIEKAHPD-----------VFNILLQVMDNGT 585 (758)
T ss_dssp EGGGCSSSSCCSSSCCCCSCSHHHHHT--THHHHHHH-HCSSEEEEEETGGGSCHH-----------HHHHHHHHHHHSE
T ss_pred echhhcchhhHhhhcCCCCCCcCcccc--chHHHHHH-hCCCcEEEEeCccccCHH-----------HHHHHHHHhcCcE
Confidence 99887653 3333221 11222222 345799999999998644 4455555555321
Q ss_pred c---------CCcEEEEEeeCCCC-------------------------CCChHHHhccceEEEecCCCHHHHHHHHHHH
Q 047219 428 Q---------DKKVVVIAATNRKQ-------------------------DLDPALISRFDSMITFGLPDHENRQEIAAQY 473 (567)
Q Consensus 428 ~---------~~~viVIaaTN~~~-------------------------~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~ 473 (567)
. -.+++||+|||... .++++|++||+..+.|+.|+.+++..|+..+
T Consensus 586 ~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~ 665 (758)
T 1r6b_X 586 LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF 665 (758)
T ss_dssp EEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred EEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHH
Confidence 1 25789999999743 6899999999999999999999999999988
Q ss_pred HHh-------------hCHHHHHHHHHhcc--CCCHHHHHHHHHHHHHH-HHHHHHhcc
Q 047219 474 AKH-------------LTKAELAELATATE--EMSGRDIRDVCQQAERS-WASKIIRGQ 516 (567)
Q Consensus 474 ~~~-------------~~~~~l~~la~~t~--g~s~~dL~~L~~~a~~~-a~~r~i~~~ 516 (567)
+.. +..+.++.++...+ .+..++++++++.+... .++.++.+.
T Consensus 666 l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~l~~~ 724 (758)
T 1r6b_X 666 IVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGS 724 (758)
T ss_dssp HHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHHHHST
T ss_pred HHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHHHcCc
Confidence 763 34556666766543 34577888888877755 334444443
No 49
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.73 E-value=6.7e-17 Score=170.38 Aligned_cols=226 Identities=19% Similarity=0.289 Sum_probs=137.6
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHH--------hhhhcc-cccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYD--------DIARGT-RCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP 350 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~--------~l~~~~-~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~ 350 (567)
+.|+|++++++.|...+...++...... .-.... .......++.++||+||||||||++|+++|+.+
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l---- 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL---- 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT----
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh----
Confidence 3589999999999988854332221100 000000 000013467789999999999999999999999
Q ss_pred CCCcCeEEechhhHH-hhhhchh-HHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhH--H-HHHHHHHHHHHh
Q 047219 351 WQGVPLMYVPLEVVM-SKYYGES-ERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMH--E-ATRRILSVLLRQ 422 (567)
Q Consensus 351 ~~~~~~~~i~~~~l~-s~~~G~~-~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~--~-~~~~vl~~LL~~ 422 (567)
+.+|+.+++..+. ..++|+. +..+..++..+.. .+.++||||||+|.+...+..... + ....+++.|+..
T Consensus 97 --~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~ 174 (376)
T 1um8_A 97 --DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 174 (376)
T ss_dssp --TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHH
T ss_pred --CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHH
Confidence 6789999888765 3555653 3445555543321 123699999999999866322110 0 111255677777
Q ss_pred hcCcc-------------------cCCcEEEEEeeCC-----------------------------------------CC
Q 047219 423 IDGFE-------------------QDKKVVVIAATNR-----------------------------------------KQ 442 (567)
Q Consensus 423 ld~~~-------------------~~~~viVIaaTN~-----------------------------------------~~ 442 (567)
+++.. ...++++|+++|. ..
T Consensus 175 le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (376)
T 1um8_A 175 VEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTY 254 (376)
T ss_dssp HHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHT
T ss_pred hhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhc
Confidence 76431 1256788888772 12
Q ss_pred CCChHHHhccceEEEecCCCHHHHHHHHHH----HHH-------------hhCHHHHHHHHHhcc--CCCHHHHHHHHHH
Q 047219 443 DLDPALISRFDSMITFGLPDHENRQEIAAQ----YAK-------------HLTKAELAELATATE--EMSGRDIRDVCQQ 503 (567)
Q Consensus 443 ~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~----~~~-------------~~~~~~l~~la~~t~--g~s~~dL~~L~~~ 503 (567)
.+.++|++||+..+.|+.++.++..+++.. ++. .+..+.++.++...+ ....+.|++++..
T Consensus 255 ~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~ 334 (376)
T 1um8_A 255 GLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIED 334 (376)
T ss_dssp TCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHH
T ss_pred CCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence 478999999999999999999999998862 211 144556666666644 2456777777777
Q ss_pred HHHHHHHH
Q 047219 504 AERSWASK 511 (567)
Q Consensus 504 a~~~a~~r 511 (567)
+...++.+
T Consensus 335 ~~~~~~~~ 342 (376)
T 1um8_A 335 FCLDIMFD 342 (376)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 66555444
No 50
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.72 E-value=1.3e-18 Score=183.76 Aligned_cols=200 Identities=23% Similarity=0.270 Sum_probs=146.0
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC-CCCCcCeEE
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM-PWQGVPLMY 358 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~-~~~~~~~~~ 358 (567)
.+++|.+..++++.+.+... .....++|++|++||||+++|+++|+.+.+. .|+.++|..
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~-------------------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~ 189 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI-------------------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCAS 189 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH-------------------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSS
T ss_pred ccccccchHHHHHHhhhhhh-------------------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEccc
Confidence 46899999999998877654 4456779999999999999999999998654 244444444
Q ss_pred echhhHHhhhhchhHHHH-------HHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc
Q 047219 359 VPLEVVMSKYYGESERLL-------GKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 359 i~~~~l~s~~~G~~~~~l-------~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
++.+.+.+.+||+....+ ...|+.| .+++||||||+.|+...|..+.+++++ ..+...........+
T Consensus 190 ~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a----~~gtlfldei~~l~~~~Q~~Ll~~l~~--~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 190 IPQELAESELFGHEKGAFTGALTRKKGKLELA----DQGTLFLDEVGELDQRVQAKLLRVLET--GSFTRLGGNQKIEVD 263 (368)
T ss_dssp SCTTTHHHHHHEECSCSSSSCCCCEECHHHHT----TTSEEEEETGGGSCHHHHHHHHHHHHH--SEECCBTCCCBEECC
T ss_pred CChHHHHHHhcCccccccCCcccccCChHhhc----CCCeEEecChhhCCHHHHHHHHHHHHh--CCcccCCCCcceeee
Confidence 444556777777643221 1234443 379999999999998877666555443 111112222223457
Q ss_pred EEEEEeeCC-------CCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 432 VVVIAATNR-------KQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 432 viVIaaTN~-------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
+++|+|||. .+.|+++|++|+ ..+.+.+|++++|.+++..+++++......++.....+++...++.|+.+.
T Consensus 264 ~rii~at~~~l~~~v~~g~fr~dL~~rl-~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 342 (368)
T 3dzd_A 264 IRVISATNKNLEEEIKKGNFREDLYYRL-SVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE 342 (368)
T ss_dssp CEEEEEESSCHHHHHHTTSSCHHHHHHH-TSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHHHh-CCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC
Confidence 899999997 467999999999 789999999999999999998887766666665556678888888888888
Q ss_pred H
Q 047219 505 E 505 (567)
Q Consensus 505 ~ 505 (567)
|
T Consensus 343 w 343 (368)
T 3dzd_A 343 W 343 (368)
T ss_dssp C
T ss_pred C
Confidence 7
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.71 E-value=2.2e-17 Score=171.12 Aligned_cols=178 Identities=21% Similarity=0.320 Sum_probs=104.6
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCC----
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGA---- 348 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~---- 348 (567)
..+..+|++++|++..++.+...+. .....++||+||||||||++|+++|+.+..
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~---------------------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~ 75 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAV---------------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAV 75 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHH---------------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEE
T ss_pred CCCCCCchhccChHHHHHHHHHHhh---------------------CCCCceEEEECCCCccHHHHHHHHHHhCcccccc
Confidence 3466889999999997765433221 123456999999999999999999999863
Q ss_pred --CCCC---------------------CcCeEEechhhHHhhhhchhHHHHHHHHHHHh--------cCCCCcEEEEcCc
Q 047219 349 --MPWQ---------------------GVPLMYVPLEVVMSKYYGESERLLGKVFSLAN--------ELPNGAIIFLDEV 397 (567)
Q Consensus 349 --~~~~---------------------~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~--------~~a~~~ILfIDEI 397 (567)
.++. ..+++.++.......++|... +...+.... ..+.+++||||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi 153 (350)
T 1g8p_A 76 EGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDEC 153 (350)
T ss_dssp TTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTG
T ss_pred ccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeCh
Confidence 1110 011222222222223333210 011111110 0112689999999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC-CCChHHHhccceEEEecCC-CHHHHHHHHHHH
Q 047219 398 DSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ-DLDPALISRFDSMITFGLP-DHENRQEIAAQY 473 (567)
Q Consensus 398 D~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~-~Ld~aL~sRf~~~I~i~~P-~~~eR~eIL~~~ 473 (567)
|.+....+..+...+++....+.........+.++++|+|||+.. .++++|++||+..++++.| +.+++.+|++..
T Consensus 154 ~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 154 NLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp GGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHH
Confidence 999765443332222110000000000111234899999999844 8999999999888999999 677777888763
No 52
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.71 E-value=7.9e-16 Score=147.18 Aligned_cols=189 Identities=19% Similarity=0.193 Sum_probs=130.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
..+..|++++|.++.++.+.+.+.. ....+++|+||||||||++|+++++.+.... ..
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~---------------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-~~ 68 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVER---------------------KNIPHLLFSGPPGTGKTATAIALARDLFGEN-WR 68 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHT---------------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-GG
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhC---------------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccc-cc
Confidence 3456799999999999999887752 2334599999999999999999999863221 13
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHHhc-----CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCccc
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLANE-----LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~-----~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~ 428 (567)
..++.+++...... ..+...+..... ...+.+|||||+|.+.... ...|+..++. .
T Consensus 69 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~-----------~~~l~~~l~~--~ 129 (226)
T 2chg_A 69 DNFIEMNASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADA-----------QAALRRTMEM--Y 129 (226)
T ss_dssp GGEEEEETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHH-----------HHHHHHHHHH--T
T ss_pred cceEEeccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHH-----------HHHHHHHHHh--c
Confidence 44666665433221 111222222111 2346899999999986442 2234444442 2
Q ss_pred CCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 429 DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
..++++|++||.+..+++++++|| ..+.++.|+.++..+++..++.. +..+.+..++..+.| +.+.+.+++..+
T Consensus 130 ~~~~~~i~~~~~~~~~~~~l~~r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~ 207 (226)
T 2chg_A 130 SKSCRFILSCNYVSRIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGA 207 (226)
T ss_dssp TTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CCCCeEEEEeCChhhcCHHHHHhC-ceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 457889999999999999999999 49999999999999999988754 456777788776654 555555555544
Q ss_pred H
Q 047219 505 E 505 (567)
Q Consensus 505 ~ 505 (567)
+
T Consensus 208 ~ 208 (226)
T 2chg_A 208 A 208 (226)
T ss_dssp H
T ss_pred H
Confidence 4
No 53
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.71 E-value=1.7e-16 Score=170.61 Aligned_cols=220 Identities=20% Similarity=0.342 Sum_probs=153.7
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
++|+|++++++.+...+..+.+++.++..+. ...+++++||+||||||||++|+++|+.+ +.+|+.+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~-------~~~~~~~iLl~GppGtGKT~lar~lA~~l------~~~~~~v 81 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLR-------HEVTPKNILMIGPTGVGKTEIARRLAKLA------NAPFIKV 81 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTT-------TTCCCCCEEEECCTTSSHHHHHHHHHHHT------TCCEEEE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccc-------cccCCceEEEEcCCCCCHHHHHHHHHHHc------CCCceee
Confidence 4799999999999999987766666554332 12367899999999999999999999999 7789999
Q ss_pred chhhHHh-hhhch-hHHHHHHHHHHHh-----------------------------------------------------
Q 047219 360 PLEVVMS-KYYGE-SERLLGKVFSLAN----------------------------------------------------- 384 (567)
Q Consensus 360 ~~~~l~s-~~~G~-~~~~l~~~f~~A~----------------------------------------------------- 384 (567)
+++.+.+ .|+|+ .+..++.+|..+.
T Consensus 82 ~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~ 161 (444)
T 1g41_A 82 EATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRK 161 (444)
T ss_dssp EGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC-----------------------------------------
T ss_pred cchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHH
Confidence 9888777 47774 5555555554330
Q ss_pred --------------------------------------------------------------------------------
Q 047219 385 -------------------------------------------------------------------------------- 384 (567)
Q Consensus 385 -------------------------------------------------------------------------------- 384 (567)
T Consensus 162 aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~ 241 (444)
T 1g41_A 162 KLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELK 241 (444)
T ss_dssp ----------------------------------------------------------------CCGGGSCSSCCHHHHH
T ss_pred HHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHH
Confidence
Q ss_pred ----cCC-CCcEEEEcCcchhhhhhhhhhHHHH-HHHHHHHHHhhcCcc--------cCCcEEEEEee----CCCCCCCh
Q 047219 385 ----ELP-NGAIIFLDEVDSFAVARDSEMHEAT-RRILSVLLRQIDGFE--------QDKKVVVIAAT----NRKQDLDP 446 (567)
Q Consensus 385 ----~~a-~~~ILfIDEID~L~~~~q~~l~~~~-~~vl~~LL~~ld~~~--------~~~~viVIaaT----N~~~~Ld~ 446 (567)
..+ +++++|+||||+++.+......+.. +.++..||..+++.. ...++++|||. +.+.++.|
T Consensus 242 ~~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlip 321 (444)
T 1g41_A 242 QKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIP 321 (444)
T ss_dssp HHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCH
T ss_pred HHHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcch
Confidence 011 3579999999999865332222332 335678888888742 34678999987 23455779
Q ss_pred HHHhccceEEEecCCCHHHHHHHHHH----HHH-------------hhCHHHHHHHHH-------hccCCCHHHHHHHHH
Q 047219 447 ALISRFDSMITFGLPDHENRQEIAAQ----YAK-------------HLTKAELAELAT-------ATEEMSGRDIRDVCQ 502 (567)
Q Consensus 447 aL~sRf~~~I~i~~P~~~eR~eIL~~----~~~-------------~~~~~~l~~la~-------~t~g~s~~dL~~L~~ 502 (567)
.|++||+.++.|+.++.++...|+.. +.. .+.++.+..+++ ++.....+.|+.++.
T Consensus 322 el~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie 401 (444)
T 1g41_A 322 ELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVME 401 (444)
T ss_dssp HHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHH
T ss_pred HHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHH
Confidence 99999988899999999999999941 111 144555555554 345566677777777
Q ss_pred HHHHHHHHHH
Q 047219 503 QAERSWASKI 512 (567)
Q Consensus 503 ~a~~~a~~r~ 512 (567)
...+.....+
T Consensus 402 ~~~~~~~~~~ 411 (444)
T 1g41_A 402 RLMDKISFSA 411 (444)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHhhc
Confidence 6666555443
No 54
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.70 E-value=1.2e-17 Score=152.91 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=99.0
Q ss_pred cccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 281 NIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 281 dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
+++|.+..++.+.+.+... ...+.+|||+||||||||++|+++|+.+.+. +.+|+ ++
T Consensus 2 ~iiG~s~~~~~~~~~~~~~-------------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~---~~~~v-~~ 58 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL-------------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNA---QGEFV-YR 58 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH-------------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTT---TSCCE-EE
T ss_pred CceeCCHHHHHHHHHHHHH-------------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCcc---CCCEE-EE
Confidence 6899999999999988754 4567889999999999999999999987554 45677 77
Q ss_pred hhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC
Q 047219 361 LEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR 440 (567)
Q Consensus 361 ~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~ 440 (567)
+..+... ......|..+. +++|||||||.+....|. .|+..+. ....++++|+|||.
T Consensus 59 ~~~~~~~------~~~~~~~~~a~----~g~l~ldei~~l~~~~q~-----------~Ll~~l~--~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 59 ELTPDNA------PQLNDFIALAQ----GGTLVLSHPEHLTREQQY-----------HLVQLQS--QEHRPFRLIGIGDT 115 (145)
T ss_dssp ECCTTTS------SCHHHHHHHHT----TSCEEEECGGGSCHHHHH-----------HHHHHHH--SSSCSSCEEEEESS
T ss_pred CCCCCcc------hhhhcHHHHcC----CcEEEEcChHHCCHHHHH-----------HHHHHHh--hcCCCEEEEEECCc
Confidence 7765543 12233455543 689999999999765443 3333332 23457889999996
Q ss_pred -------CCCCChHHHhccceEEEecCCCH
Q 047219 441 -------KQDLDPALISRFDSMITFGLPDH 463 (567)
Q Consensus 441 -------~~~Ld~aL~sRf~~~I~i~~P~~ 463 (567)
...++++|++|+ ..+.+..|++
T Consensus 116 ~~~~~~~~~~~~~~L~~rl-~~~~i~lPpL 144 (145)
T 3n70_A 116 SLVELAASNHIIAELYYCF-AMTQIACLPL 144 (145)
T ss_dssp CHHHHHHHSCCCHHHHHHH-HHHEEECCCC
T ss_pred CHHHHHHcCCCCHHHHHHh-cCCEEeCCCC
Confidence 346899999998 5566666764
No 55
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.70 E-value=4.3e-17 Score=189.60 Aligned_cols=207 Identities=23% Similarity=0.305 Sum_probs=145.6
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeE
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLM 357 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~ 357 (567)
.+++|+|++++++.+...+...... +. ....+..++||+||||||||++|+++|+.+.+. +.+++
T Consensus 556 l~~~viG~~~a~~~l~~~i~~~~~g------~~------~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~---~~~~i 620 (854)
T 1qvr_A 556 LHKRVVGQDEAIRAVADAIRRARAG------LK------DPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT---EEAMI 620 (854)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHGGG------CS------CSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS---GGGEE
T ss_pred HhcccCCcHHHHHHHHHHHHHHhcc------cC------CCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC---CCcEE
Confidence 3578999999999999988653110 00 002334689999999999999999999998554 56788
Q ss_pred EechhhHHhh-----hh-------chhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcC
Q 047219 358 YVPLEVVMSK-----YY-------GESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG 425 (567)
Q Consensus 358 ~i~~~~l~s~-----~~-------G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~ 425 (567)
.++++.+... ++ |..+ .+ .|..+....+++||||||||.+.+. +++.|++.++.
T Consensus 621 ~i~~~~~~~~~~~s~l~g~~~~~~G~~~--~g-~l~~~~~~~~~~vl~lDEi~~l~~~-----------~~~~Ll~~l~~ 686 (854)
T 1qvr_A 621 RIDMTEYMEKHAVSRLIGAPPGYVGYEE--GG-QLTEAVRRRPYSVILFDEIEKAHPD-----------VFNILLQILDD 686 (854)
T ss_dssp EECTTTCCSSGGGGGC-----------------CHHHHHHHCSSEEEEESSGGGSCHH-----------HHHHHHHHHTT
T ss_pred EEechhccchhHHHHHcCCCCCCcCccc--cc-hHHHHHHhCCCeEEEEecccccCHH-----------HHHHHHHHhcc
Confidence 8888765432 33 3222 11 2233333345799999999998643 45666777664
Q ss_pred cc---------cCCcEEEEEeeCC--------------------------CCCCChHHHhccceEEEecCCCHHHHHHHH
Q 047219 426 FE---------QDKKVVVIAATNR--------------------------KQDLDPALISRFDSMITFGLPDHENRQEIA 470 (567)
Q Consensus 426 ~~---------~~~~viVIaaTN~--------------------------~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL 470 (567)
.. .-.+++||+|||. ...|+++|++||+..+.|.+|+.++...|+
T Consensus 687 ~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~ 766 (854)
T 1qvr_A 687 GRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIV 766 (854)
T ss_dssp TEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHH
T ss_pred CceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHH
Confidence 32 1147889999997 346899999999999999999999999999
Q ss_pred HHHHHh-------------hCHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHHHH
Q 047219 471 AQYAKH-------------LTKAELAELATATE--EMSGRDIRDVCQQAERSWASKII 513 (567)
Q Consensus 471 ~~~~~~-------------~~~~~l~~la~~t~--g~s~~dL~~L~~~a~~~a~~r~i 513 (567)
..++.. +..+.++.++...+ .++.++|+++++.+......+.+
T Consensus 767 ~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 767 EIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp HHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 887652 45667777877766 67888888888887765555443
No 56
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.69 E-value=2.4e-16 Score=171.38 Aligned_cols=184 Identities=21% Similarity=0.281 Sum_probs=129.7
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCC
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQ 352 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~ 352 (567)
-++++|+|.++.++.+.+.+. .....++||+||||||||++|+++|+.+... .+.
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~---------------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~ 235 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLS---------------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHH---------------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred CCCCCccCcHHHHHHHHHHHh---------------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 468899999999999888764 2445789999999999999999999997432 123
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
+.+++.+++. ..+.|+.+..++.+|..+.... ++||||| . . ....+.|+..++ .+.+
T Consensus 236 ~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~-~~iLfiD----~--~---------~~a~~~L~~~L~----~g~v 292 (468)
T 3pxg_A 236 DKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAG-NIILFID----A--A---------IDASNILKPSLA----RGEL 292 (468)
T ss_dssp SCCEECC-------------CTTHHHHHHHHHTCC-CCEEEEC----C-------------------CCCTT----SSSC
T ss_pred CCeEEEeeCC---ccccchHHHHHHHHHHHHHhcC-CeEEEEe----C--c---------hhHHHHHHHhhc----CCCE
Confidence 6678888877 6677887788888999888764 5999999 1 1 112234444443 5689
Q ss_pred EEEEeeCCCC-----CCChHHHhccceEEEecCCCHHHHHHHHHHHHHh--------hCHHHHHHHHHhccCCC-----H
Q 047219 433 VVIAATNRKQ-----DLDPALISRFDSMITFGLPDHENRQEIAAQYAKH--------LTKAELAELATATEEMS-----G 494 (567)
Q Consensus 433 iVIaaTN~~~-----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~--------~~~~~l~~la~~t~g~s-----~ 494 (567)
++|++||... .++++|++|| ..+.|+.|+.+++.+|++.++.. +.++.+..++..+.+|. +
T Consensus 293 ~vI~at~~~e~~~~~~~~~al~~Rf-~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp 371 (468)
T 3pxg_A 293 QCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP 371 (468)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred EEEecCCHHHHHHHhhcCHHHHHhC-ccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCC
Confidence 9999999876 6999999999 57999999999999999987654 45666676666655544 3
Q ss_pred HHHHHHHHHHH
Q 047219 495 RDIRDVCQQAE 505 (567)
Q Consensus 495 ~dL~~L~~~a~ 505 (567)
.....++..+.
T Consensus 372 ~~ai~ll~~a~ 382 (468)
T 3pxg_A 372 DKAIDLIDEAG 382 (468)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 45666666655
No 57
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.69 E-value=2.6e-15 Score=145.07 Aligned_cols=190 Identities=21% Similarity=0.233 Sum_probs=135.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~ 353 (567)
.+..|++++|.+..++.+.+.+.. ...+..++|+||||||||++++++++.+.... ...
T Consensus 18 ~p~~~~~~~g~~~~~~~l~~~l~~--------------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~ 77 (250)
T 1njg_A 18 RPQTFADVVGQEHVLTALANGLSL--------------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 77 (250)
T ss_dssp CCCSGGGCCSCHHHHHHHHHHHHH--------------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS
T ss_pred CCccHHHHhCcHHHHHHHHHHHHc--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC
Confidence 345789999999999999887753 34456899999999999999999999874321 111
Q ss_pred c-----------------CeEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 354 V-----------------PLMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 354 ~-----------------~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
. .+..++... ......+..++..+.. ...+.+|||||+|.+...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~---------- 141 (250)
T 1njg_A 78 TPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH---------- 141 (250)
T ss_dssp SCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH----------
T ss_pred CCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH----------
Confidence 1 112222111 0122334445544331 223589999999998533
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
.++.|+..++. .+.++++|++||.+..+.+.+++|+ ..++++.|+.++..+++..++.. +..+.++.++..+
T Consensus 142 -~~~~l~~~l~~--~~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 217 (250)
T 1njg_A 142 -SFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 217 (250)
T ss_dssp -HHHHHHHHHHS--CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhc--CCCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Confidence 23445555553 3567899999999999999999998 89999999999999999988753 5677888899888
Q ss_pred cCCCHHHHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQQAE 505 (567)
Q Consensus 490 ~g~s~~dL~~L~~~a~ 505 (567)
.| +++.+..++..+.
T Consensus 218 ~G-~~~~~~~~~~~~~ 232 (250)
T 1njg_A 218 EG-SLRDALSLTDQAI 232 (250)
T ss_dssp TT-CHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHH
Confidence 66 7888888887664
No 58
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.68 E-value=4.1e-16 Score=168.34 Aligned_cols=175 Identities=19% Similarity=0.244 Sum_probs=121.6
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFA 401 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~ 401 (567)
+.+++|+||||||||++|+++++++... +.+.+++++++..+...+.+.........|...... .+.+|||||+|.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~-~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRK-KVDILLIDDVQFLI 207 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHH-CCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTT-TCSEEEEECGGGGS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcC-CCCEEEEeCccccc
Confidence 6799999999999999999999987321 115578999998877665544332211223332221 25899999999997
Q ss_pred hhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCC---CChHHHhccc--eEEEecCCCHHHHHHHHHHHHHh
Q 047219 402 VARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQD---LDPALISRFD--SMITFGLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 402 ~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~---Ld~aL~sRf~--~~I~i~~P~~~eR~eIL~~~~~~ 476 (567)
.+.. ....|+..++.....+..+||++.+.+.. ++++|++||. ..+.++.|+.++|.+++...+..
T Consensus 208 ~~~~---------~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~ 278 (440)
T 2z4s_A 208 GKTG---------VQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEI 278 (440)
T ss_dssp SCHH---------HHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHH
T ss_pred CChH---------HHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 5311 11233333333223445566666565554 8899999995 68999999999999999988763
Q ss_pred ----hCHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Q 047219 477 ----LTKAELAELATATEEMSGRDIRDVCQQAERSW 508 (567)
Q Consensus 477 ----~~~~~l~~la~~t~g~s~~dL~~L~~~a~~~a 508 (567)
++.+.++.++..+.| +.+++..++..+...+
T Consensus 279 ~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a 313 (440)
T 2z4s_A 279 EHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_dssp HTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 456678888888764 7888888888776543
No 59
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.68 E-value=2.1e-17 Score=151.01 Aligned_cols=133 Identities=15% Similarity=0.238 Sum_probs=95.8
Q ss_pred cccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEec
Q 047219 281 NIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 281 dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
+++|.+++++++++.+... ...+.+|||+||||||||++|+++|+.+ . +++.++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~-------------------~~~~~~vll~G~~GtGKt~lA~~i~~~~------~-~~~~~~ 58 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA-------------------AKRTSPVFLTGEAGSPFETVARYFHKNG------T-PWVSPA 58 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH-------------------HTCSSCEEEEEETTCCHHHHHGGGCCTT------S-CEECCS
T ss_pred CceeCCHHHHHHHHHHHHH-------------------hCCCCcEEEECCCCccHHHHHHHHHHhC------C-CeEEec
Confidence 5889999999999988754 3456789999999999999999999987 3 788899
Q ss_pred hhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC
Q 047219 361 LEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR 440 (567)
Q Consensus 361 ~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~ 440 (567)
+..+...+ ....++.+. +++|||||||.+....|..+. ..++.. ...++++|+|||.
T Consensus 59 ~~~~~~~~-------~~~~~~~a~----~~~l~lDei~~l~~~~q~~Ll-----------~~l~~~-~~~~~~iI~~tn~ 115 (143)
T 3co5_A 59 RVEYLIDM-------PMELLQKAE----GGVLYVGDIAQYSRNIQTGIT-----------FIIGKA-ERCRVRVIASCSY 115 (143)
T ss_dssp STTHHHHC-------HHHHHHHTT----TSEEEEEECTTCCHHHHHHHH-----------HHHHHH-TTTTCEEEEEEEE
T ss_pred hhhCChHh-------hhhHHHhCC----CCeEEEeChHHCCHHHHHHHH-----------HHHHhC-CCCCEEEEEecCC
Confidence 88776544 334555443 689999999999866544333 222221 1457889999985
Q ss_pred C-CC----CChHHHhccceEEEecCCCH
Q 047219 441 K-QD----LDPALISRFDSMITFGLPDH 463 (567)
Q Consensus 441 ~-~~----Ld~aL~sRf~~~I~i~~P~~ 463 (567)
+ .. ++++|++|| ..+.+.+|++
T Consensus 116 ~~~~~~~~~~~~L~~rl-~~~~i~lPpL 142 (143)
T 3co5_A 116 AAGSDGISCEEKLAGLF-SESVVRIPPL 142 (143)
T ss_dssp CTTTC--CHHHHHHHHS-SSEEEEECCC
T ss_pred CHHHHHhCccHHHHHHh-cCcEEeCCCC
Confidence 3 22 678899998 5556666664
No 60
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=99.67 E-value=4.8e-18 Score=164.88 Aligned_cols=110 Identities=13% Similarity=0.198 Sum_probs=92.8
Q ss_pred chhhhH-HHHHHHhCCCCCCccceEEEEecce--EEEEEEecC-CC--CcchHHHHHHHhhCceecccCCCceeEEEee-
Q 047219 111 KERQRI-EELLKRKGMHYGSCPTFTVAVKGQK--VTIKFQVPP-AC--EIPQLIANLVSHLGLKVEEHGGGSDMGLRAW- 183 (567)
Q Consensus 111 ~~~~~~-~~~~~~~g~~~g~~~~~~v~~~g~~--~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~- 183 (567)
+|++|| ++.|++||+.+||+ |+|+|++ .|+|+|||+ .+ +++++++.+|+|+|+++|| .|+|+++
T Consensus 39 rgivrl~p~~m~~Lgl~~GD~----V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD-----~V~V~~~~ 109 (211)
T 3qwz_A 39 NSVVSLSQPKMDELQLFRGDT----VLLKGXKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD-----VISIQPCP 109 (211)
T ss_dssp TTEEEECHHHHHHHTCCBTCE----EEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTC-----EEEEEECT
T ss_pred CcEEEECHHHHHHcCCCCCCE----EEEeCCCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCC-----EEEEEECC
Confidence 899999 69999999999999 9999998 899999997 33 6799999999999999999 9999999
Q ss_pred cccccceeEecCCCCccc-cCCCccccCcccccccchheee--eceeecCCCCcee
Q 047219 184 DSAVAWQLTLKPPEKQNE-SGGDRAQSGDMNAREGDLCILI--FRSLITSDKPEIE 236 (567)
Q Consensus 184 ~~~~a~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~ 236 (567)
++++|++|+|+|..+++. +.++. ...+....+. ++|+..||.+.+.
T Consensus 110 ~v~~A~~V~LaP~~~~i~~i~~~~-------~~~~lk~~l~~~~rPV~~GD~i~v~ 158 (211)
T 3qwz_A 110 DVKYGKRIHVLPIDDTVEGITGNL-------FEVYLKPYFLEAYRPIRKGDIFLVR 158 (211)
T ss_dssp TCCBCSEEEEEEBGGGCTTCCSCH-------HHHTTHHHHTTCCEEEETTCEEECC
T ss_pred CCCCceEEEEeccCcchhccCchh-------HHHHHHHHHhhCCceeecCCEEEEc
Confidence 899999999999866554 33330 0134556675 7999999988665
No 61
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.66 E-value=2e-15 Score=157.54 Aligned_cols=210 Identities=20% Similarity=0.218 Sum_probs=142.0
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC---C
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP---W 351 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~---~ 351 (567)
+....++++|.++.++.+.+.+...+ ....+.+++|+||||||||++|+++++.+.... .
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~~-----------------~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~ 76 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPAL-----------------RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLG 76 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGGT-----------------SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHT
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHHH-----------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 33455899999999999887664321 135678999999999999999999999873210 0
Q ss_pred CCcCeEEechhhHH------hhhh----------ch-hHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHH
Q 047219 352 QGVPLMYVPLEVVM------SKYY----------GE-SERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRR 414 (567)
Q Consensus 352 ~~~~~~~i~~~~l~------s~~~----------G~-~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~ 414 (567)
.+..++++++.... ..+. |. ....+..++........+.+|||||+|.+.... ..++
T Consensus 77 ~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~ 150 (387)
T 2v1u_A 77 VLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQD 150 (387)
T ss_dssp CCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHH
T ss_pred CCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCCh
Confidence 13467778765321 1111 11 223344455544444335799999999996542 0134
Q ss_pred HHHHHHHhhcCcccCCcEEEEEeeCCC---CCCChHHHhccce-EEEecCCCHHHHHHHHHHHHHh------hCHHHHHH
Q 047219 415 ILSVLLRQIDGFEQDKKVVVIAATNRK---QDLDPALISRFDS-MITFGLPDHENRQEIAAQYAKH------LTKAELAE 484 (567)
Q Consensus 415 vl~~LL~~ld~~~~~~~viVIaaTN~~---~~Ld~aL~sRf~~-~I~i~~P~~~eR~eIL~~~~~~------~~~~~l~~ 484 (567)
.+..++..++......++.+|++||.+ +.+++.+++||.. .+.|+.|+.++..+++...+.. +..+.++.
T Consensus 151 ~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 230 (387)
T 2v1u_A 151 LLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPL 230 (387)
T ss_dssp HHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHH
T ss_pred HHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHH
Confidence 455566665543225688999999987 7899999999975 8999999999999999988763 44556777
Q ss_pred HHHhcc---CCCHHHHHHHHHHHHHHH
Q 047219 485 LATATE---EMSGRDIRDVCQQAERSW 508 (567)
Q Consensus 485 la~~t~---g~s~~dL~~L~~~a~~~a 508 (567)
++..+. | .++.+..++..++..+
T Consensus 231 l~~~~~~~~G-~~r~~~~~l~~a~~~a 256 (387)
T 2v1u_A 231 CAALAAREHG-DARRALDLLRVAGEIA 256 (387)
T ss_dssp HHHHHHSSSC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc-CHHHHHHHHHHHHHHH
Confidence 777776 5 5677778888777544
No 62
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.66 E-value=1.7e-15 Score=147.48 Aligned_cols=190 Identities=15% Similarity=0.170 Sum_probs=127.6
Q ss_pred CCCCCcccccCc---HHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC
Q 047219 274 KSEISWENIAGY---DQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP 350 (567)
Q Consensus 274 ~~~~~~~dIiG~---~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~ 350 (567)
.+..+|++++|. ..+++.+...+. ...+.+++|+||||||||++|+++++++...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~- 79 (242)
T 3bos_A 22 PDDETFTSYYPAAGNDELIGALKSAAS---------------------GDGVQAIYLWGPVKSGRTHLIHAACARANEL- 79 (242)
T ss_dssp CTTCSTTTSCC--CCHHHHHHHHHHHH---------------------TCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-
T ss_pred CCCCChhhccCCCCCHHHHHHHHHHHh---------------------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-
Confidence 345789999972 355555554432 2356899999999999999999999988543
Q ss_pred CCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 351 WQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 351 ~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
+.++.++++..+...+... +. ....+.+|||||+|.+..... ....++..++.....+
T Consensus 80 --~~~~~~~~~~~~~~~~~~~--------~~---~~~~~~vliiDe~~~~~~~~~---------~~~~l~~~l~~~~~~~ 137 (242)
T 3bos_A 80 --ERRSFYIPLGIHASISTAL--------LE---GLEQFDLICIDDVDAVAGHPL---------WEEAIFDLYNRVAEQK 137 (242)
T ss_dssp --TCCEEEEEGGGGGGSCGGG--------GT---TGGGSSEEEEETGGGGTTCHH---------HHHHHHHHHHHHHHHC
T ss_pred --CCeEEEEEHHHHHHHHHHH--------HH---hccCCCEEEEeccccccCCHH---------HHHHHHHHHHHHHHcC
Confidence 4678888887766543111 11 112358999999999875531 0122223322222233
Q ss_pred cEEEEEeeC-CCC---CCChHHHhccc--eEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHH
Q 047219 431 KVVVIAATN-RKQ---DLDPALISRFD--SMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDV 500 (567)
Q Consensus 431 ~viVIaaTN-~~~---~Ld~aL~sRf~--~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L 500 (567)
.+.+|+++| .+. .+.+++++||. ..++++.|+.+++.+++..++.. +..+.++.++..+.| +.+++.++
T Consensus 138 ~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~ 216 (242)
T 3bos_A 138 RGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDV 216 (242)
T ss_dssp SCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHH
T ss_pred CCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHH
Confidence 443444554 333 45699999996 79999999999999999998764 567788888887754 67777777
Q ss_pred HHHHHHHH
Q 047219 501 CQQAERSW 508 (567)
Q Consensus 501 ~~~a~~~a 508 (567)
+..+...+
T Consensus 217 l~~~~~~a 224 (242)
T 3bos_A 217 LDRLDKAS 224 (242)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
No 63
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.65 E-value=5.7e-16 Score=144.66 Aligned_cols=157 Identities=22% Similarity=0.303 Sum_probs=111.4
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCC
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQ 352 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~ 352 (567)
..|++++|.+++++.+.+.+. ...+.+++|+||||||||++|+++++.+... ...
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~---------------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~ 77 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILS---------------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLK 77 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT---------------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTT
T ss_pred cccchhhcchHHHHHHHHHHh---------------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhc
Confidence 468899999999988877653 3446789999999999999999999987431 112
Q ss_pred CcCeEEechhhHHh--hhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhh-hhhHHHHHHHHHHHHHhhcCcccC
Q 047219 353 GVPLMYVPLEVVMS--KYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARD-SEMHEATRRILSVLLRQIDGFEQD 429 (567)
Q Consensus 353 ~~~~~~i~~~~l~s--~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q-~~l~~~~~~vl~~LL~~ld~~~~~ 429 (567)
+.+++.+++..+.. .+.+.....+..++..+.....+.+|||||+|.+..... .... ..+.+.+...++ .
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~~l~~~~~----~ 150 (187)
T 2p65_A 78 GRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA---LDAGNILKPMLA----R 150 (187)
T ss_dssp TCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS---CCTHHHHHHHHH----T
T ss_pred CCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc---hHHHHHHHHHHh----c
Confidence 56788888877653 245556667777777776654457999999999974432 1000 111222333332 3
Q ss_pred CcEEEEEeeCCCC-----CCChHHHhccceEEEecCCC
Q 047219 430 KKVVVIAATNRKQ-----DLDPALISRFDSMITFGLPD 462 (567)
Q Consensus 430 ~~viVIaaTN~~~-----~Ld~aL~sRf~~~I~i~~P~ 462 (567)
.++++|+++|.+. .++++|++||. .++++.|+
T Consensus 151 ~~~~ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 GELRCIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp TCSCEEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred CCeeEEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 5678999998765 68999999995 68898885
No 64
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.65 E-value=4e-16 Score=161.28 Aligned_cols=166 Identities=19% Similarity=0.211 Sum_probs=105.9
Q ss_pred cccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEE
Q 047219 279 WENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMY 358 (567)
Q Consensus 279 ~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~ 358 (567)
+++++|++++++.+...+.. +.++||+||||||||++|+++++.+ +.++..
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~-----------------------~~~vll~G~pGtGKT~la~~la~~~------~~~~~~ 76 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT-----------------------GGHILLEGVPGLAKTLSVNTLAKTM------DLDFHR 76 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH-----------------------TCCEEEESCCCHHHHHHHHHHHHHT------TCCEEE
T ss_pred ccceeCcHHHHHHHHHHHHc-----------------------CCeEEEECCCCCcHHHHHHHHHHHh------CCCeEE
Confidence 46799999999888766531 3589999999999999999999998 556776
Q ss_pred echh--hHHhhhhchhHH-HHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEE
Q 047219 359 VPLE--VVMSKYYGESER-LLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVI 435 (567)
Q Consensus 359 i~~~--~l~s~~~G~~~~-~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVI 435 (567)
+++. ...+.+.|.... .....|......-.+++|||||+|.+.+..+..+...+++....+ .......+.++++|
T Consensus 77 i~~~~~~~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~vi 154 (331)
T 2r44_A 77 IQFTPDLLPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTI--GDTTYPLDNPFLVL 154 (331)
T ss_dssp EECCTTCCHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE--TTEEEECCSSCEEE
T ss_pred EecCCCCChhhcCCceeecCCCCceEeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceee--CCEEEECCCCEEEE
Confidence 6652 111122221000 000000000000013799999999987664443333222100000 00011235678999
Q ss_pred EeeCCCC-----CCChHHHhccceEEEecCCCHHHHHHHHHHHHH
Q 047219 436 AATNRKQ-----DLDPALISRFDSMITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 436 aaTN~~~-----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~ 475 (567)
+|+|+.+ .++++|++||+..+.++.|+.+++.+|++..+.
T Consensus 155 at~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred EecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 9999654 389999999977899999999999999988764
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.64 E-value=4.6e-15 Score=172.58 Aligned_cols=201 Identities=21% Similarity=0.286 Sum_probs=133.5
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCC
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQ 352 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~ 352 (567)
-+|++++|.++.++.+.+.+. .....+++|+||||||||++|+++|+.+... ...
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~---------------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~ 225 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILL---------------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLK 225 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHH---------------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTST
T ss_pred CCCcccCCcHHHHHHHHHHHh---------------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhc
Confidence 578999999999998887663 3456789999999999999999999987321 122
Q ss_pred CcCeEEechhhHH--hhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 353 GVPLMYVPLEVVM--SKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 353 ~~~~~~i~~~~l~--s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
+.+++++++..+. .++.|+.+..+..+|..+.....++||||||+|.|.+....... ....+.|...++ .+
T Consensus 226 ~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~---~~~~~~L~~~l~----~~ 298 (854)
T 1qvr_A 226 GKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA---VDAGNMLKPALA----RG 298 (854)
T ss_dssp TCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHH----TT
T ss_pred CCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---HHHHHHHHHHHh----CC
Confidence 6678899988876 56788888999999998886544689999999999765432211 122233444443 35
Q ss_pred cEEEEEeeCCCC----CCChHHHhccceEEEecCCCHHHHHHHHHHHHHh--------hCHHHHHHHHHhcc-----CCC
Q 047219 431 KVVVIAATNRKQ----DLDPALISRFDSMITFGLPDHENRQEIAAQYAKH--------LTKAELAELATATE-----EMS 493 (567)
Q Consensus 431 ~viVIaaTN~~~----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~--------~~~~~l~~la~~t~-----g~s 493 (567)
.+.+|++||.+. .++++|.+||+ .+.|+.|+.+++.+|++.++.. +.++.+..++..+. .+.
T Consensus 299 ~i~~I~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~l 377 (854)
T 1qvr_A 299 ELRLIGATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRL 377 (854)
T ss_dssp CCCEEEEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCT
T ss_pred CeEEEEecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccC
Confidence 778999998754 47999999995 5999999999999999877653 34556666655443 355
Q ss_pred HHHHHHHHHHHHH
Q 047219 494 GRDIRDVCQQAER 506 (567)
Q Consensus 494 ~~dL~~L~~~a~~ 506 (567)
+.....++.++..
T Consensus 378 p~kai~lldea~a 390 (854)
T 1qvr_A 378 PDKAIDLIDEAAA 390 (854)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 6666677766653
No 66
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1.1e-14 Score=148.96 Aligned_cols=193 Identities=19% Similarity=0.197 Sum_probs=131.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
..+.+|++++|++++++.+...+.. ....++||+||||||||++|+++++.+.... ..
T Consensus 19 ~~p~~~~~~~g~~~~~~~l~~~l~~---------------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~ 76 (327)
T 1iqp_A 19 YRPQRLDDIVGQEHIVKRLKHYVKT---------------------GSMPHLLFAGPPGVGKTTAALALARELFGEN-WR 76 (327)
T ss_dssp TCCCSTTTCCSCHHHHHHHHHHHHH---------------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HH
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHHc---------------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-cc
Confidence 4456899999999999999887752 2233599999999999999999999863210 02
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHH-hcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLA-NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A-~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
..++.++++..... ......+....... ...+.+.+|||||+|.+.... .+.|+..++. .+.++
T Consensus 77 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~-----------~~~L~~~le~--~~~~~ 141 (327)
T 1iqp_A 77 HNFLELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA-----------QQALRRTMEM--FSSNV 141 (327)
T ss_dssp HHEEEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHH-----------HHHHHHHHHH--TTTTE
T ss_pred CceEEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHH-----------HHHHHHHHHh--cCCCC
Confidence 34666666543221 01111122211110 011346899999999996442 2344444542 34678
Q ss_pred EEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 433 VVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 433 iVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
++|++||.+..+.+++.+|| ..+.|+.|+.++..+++...+.. +..+.++.++..+.| +.+.+.++++.++
T Consensus 142 ~~i~~~~~~~~l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 142 RFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAA 216 (327)
T ss_dssp EEEEEESCGGGSCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCCccccCHHHHhhC-cEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 89999999999999999999 58999999999999999887753 567778888887655 5555555555444
No 67
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=3.5e-15 Score=154.58 Aligned_cols=192 Identities=19% Similarity=0.180 Sum_probs=129.9
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
..+.+|++++|++++++.+...+. .....++||+||||||||++|+++++.+.......
T Consensus 31 ~~p~~~~~i~g~~~~~~~l~~~l~---------------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~ 89 (353)
T 1sxj_D 31 YRPKNLDEVTAQDHAVTVLKKTLK---------------------SANLPHMLFYGPPGTGKTSTILALTKELYGPDLMK 89 (353)
T ss_dssp TCCSSTTTCCSCCTTHHHHHHHTT---------------------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHhhCCHHHHHHHHHHHh---------------------cCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccc
Confidence 345689999999999988877653 22234599999999999999999999863210002
Q ss_pred cCeEEechhhHHh-hhhchhHHHHHHHHHH------------HhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHH
Q 047219 354 VPLMYVPLEVVMS-KYYGESERLLGKVFSL------------ANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLL 420 (567)
Q Consensus 354 ~~~~~i~~~~l~s-~~~G~~~~~l~~~f~~------------A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL 420 (567)
..+..+++..... ..+. ..+.. +.. ......+.+|||||+|.+....+ +.|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~-----------~~Ll 154 (353)
T 1sxj_D 90 SRILELNASDERGISIVR---EKVKN-FARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQ-----------SALR 154 (353)
T ss_dssp TSEEEECSSSCCCHHHHT---THHHH-HHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHH-----------HHHH
T ss_pred cceEEEccccccchHHHH---HHHHH-HhhhcccccchhhcccCCCCCceEEEEECCCccCHHHH-----------HHHH
Confidence 3466666554211 1111 11111 111 11123457999999999975533 3444
Q ss_pred HhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHH
Q 047219 421 RQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRD 496 (567)
Q Consensus 421 ~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~d 496 (567)
..++. ...++++|.+||.+..+.+++++|| ..+.+..|+.++...++...+.. +..+.++.++..+.| ..+.
T Consensus 155 ~~le~--~~~~~~~il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~ 230 (353)
T 1sxj_D 155 RTMET--YSGVTRFCLICNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRR 230 (353)
T ss_dssp HHHHH--TTTTEEEEEEESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHH
T ss_pred HHHHh--cCCCceEEEEeCchhhCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHH
Confidence 44443 2346778888999999999999999 68999999999999999987753 567788888888876 3445
Q ss_pred HHHHHHHHH
Q 047219 497 IRDVCQQAE 505 (567)
Q Consensus 497 L~~L~~~a~ 505 (567)
+.+++..++
T Consensus 231 ~~~~l~~~~ 239 (353)
T 1sxj_D 231 GITLLQSAS 239 (353)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHHHH
Confidence 445555444
No 68
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.63 E-value=2.7e-15 Score=152.85 Aligned_cols=192 Identities=19% Similarity=0.216 Sum_probs=130.9
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
...+.+|++++|++..++.+.+.+. .....++||+||||||||++|+++++.+....+
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~---------------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~- 67 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE---------------------RKNIPHLLFSGPPGTGKTATAIALARDLFGENW- 67 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTT---------------------TTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCH-
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHh---------------------CCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcc-
Confidence 3455789999999999998876553 122334999999999999999999998732211
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHh-cCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCc
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLAN-ELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKK 431 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~-~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~ 431 (567)
..+++.++++...+. ......+........ ...++.+|||||+|.+... ..+.|+..++. .+.+
T Consensus 68 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~L~~~le~--~~~~ 132 (319)
T 2chq_A 68 RDNFIEMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEM--YSKS 132 (319)
T ss_dssp HHHCEEEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-----------HHHTTGGGTSS--SSSS
T ss_pred cCCeEEEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-----------HHHHHHHHHHh--cCCC
Confidence 234666766543221 111112222211111 1134689999999998643 23455666663 3568
Q ss_pred EEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHH
Q 047219 432 VVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 432 viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
+++|++||.+..+.+++++|| ..+.|..|+.+++.+++...+.. +..+.++.++..+.| +.+.+.++++.
T Consensus 133 ~~~i~~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~ 206 (319)
T 2chq_A 133 CRFILSCNYVSRIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQG 206 (319)
T ss_dssp EEEEEEESCGGGSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHH
T ss_pred CeEEEEeCChhhcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 899999999999999999999 69999999999999999988764 467778888866544 34444444433
No 69
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.63 E-value=2.7e-15 Score=172.19 Aligned_cols=200 Identities=18% Similarity=0.233 Sum_probs=143.5
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCC
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQ 352 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~ 352 (567)
-.|++++|.++.++.+.+.+. ...+.++||+||||||||++|+++|+.+... .+.
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~---------------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~ 241 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLC---------------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMA 241 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT---------------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGT
T ss_pred CCCCCccCCHHHHHHHHHHHh---------------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 468899999999999887663 3456789999999999999999999987432 112
Q ss_pred CcCeEEechhhHH--hhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCC
Q 047219 353 GVPLMYVPLEVVM--SKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDK 430 (567)
Q Consensus 353 ~~~~~~i~~~~l~--s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~ 430 (567)
+..++.++...+. .++.|+.+..+..+|..+.... ++||||||+|.|.+....... .....+.|...+ ..+
T Consensus 242 ~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~-~~iL~IDEi~~l~~~~~~~~~--~~~~~~~L~~~l----~~~ 314 (758)
T 1r6b_X 242 DCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGG--QVDAANLIKPLL----SSG 314 (758)
T ss_dssp TCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSS-CEEEEETTTTTTTTSCCSSSC--HHHHHHHHSSCS----SSC
T ss_pred CCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcC-CeEEEEechHHHhhcCCCCcc--hHHHHHHHHHHH----hCC
Confidence 4556777766665 4577888889999999887654 599999999999765432111 111222333333 356
Q ss_pred cEEEEEeeCCCC-----CCChHHHhccceEEEecCCCHHHHHHHHHHHHHh--------hCHHHHHHHHHhccC-----C
Q 047219 431 KVVVIAATNRKQ-----DLDPALISRFDSMITFGLPDHENRQEIAAQYAKH--------LTKAELAELATATEE-----M 492 (567)
Q Consensus 431 ~viVIaaTN~~~-----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~--------~~~~~l~~la~~t~g-----~ 492 (567)
.+.+|++||.++ .++++|.+||. .+.|+.|+.+++.+|++.+..+ +..+.+..++..+.+ +
T Consensus 315 ~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~ 393 (758)
T 1r6b_X 315 KIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRH 393 (758)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSC
T ss_pred CeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhccccc
Confidence 889999998643 57899999995 8999999999999999987754 345556666655544 4
Q ss_pred CHHHHHHHHHHHH
Q 047219 493 SGRDIRDVCQQAE 505 (567)
Q Consensus 493 s~~dL~~L~~~a~ 505 (567)
.+..+..++.++.
T Consensus 394 lp~~~i~lld~a~ 406 (758)
T 1r6b_X 394 LPDKAIDVIDEAG 406 (758)
T ss_dssp TTHHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 4566777777665
No 70
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.62 E-value=2.5e-15 Score=172.58 Aligned_cols=185 Identities=21% Similarity=0.278 Sum_probs=130.3
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCC
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQ 352 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~ 352 (567)
-.+++|+|.++.++.+.+.+. .....++||+||||||||++|+++|+.+... ...
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~---------------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~ 235 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLS---------------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHH---------------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred CCCCCccCchHHHHHHHHHHh---------------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 468899999999999988764 3456789999999999999999999997332 123
Q ss_pred CcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcE
Q 047219 353 GVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKV 432 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~v 432 (567)
+..++.+++ ..++.|+.+..++.+|..+.... ++||||| .. ....+.|+..++ .+.+
T Consensus 236 ~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~-~~iLfiD--~~-------------~~~~~~L~~~l~----~~~v 292 (758)
T 3pxi_A 236 DKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAG-NIILFID--AA-------------IDASNILKPSLA----RGEL 292 (758)
T ss_dssp SCCEECC-------------CTTHHHHHHHHHTCC-CCEEEEC--C---------------------CCCTT----SSSC
T ss_pred CCeEEEecc---cccccchHHHHHHHHHHHHHhcC-CEEEEEc--Cc-------------hhHHHHHHHHHh----cCCE
Confidence 556777766 56678888889999999988754 5999999 11 112234444443 5689
Q ss_pred EEEEeeCCCC-----CCChHHHhccceEEEecCCCHHHHHHHHHHHHHh--------hCHHHHHHHHHhcc-----CCCH
Q 047219 433 VVIAATNRKQ-----DLDPALISRFDSMITFGLPDHENRQEIAAQYAKH--------LTKAELAELATATE-----EMSG 494 (567)
Q Consensus 433 iVIaaTN~~~-----~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~--------~~~~~l~~la~~t~-----g~s~ 494 (567)
++|++||... .++++|++|| ..+.|+.|+.+++.+|++.+... +....+..++..+. ++.+
T Consensus 293 ~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p 371 (758)
T 3pxi_A 293 QCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLP 371 (758)
T ss_dssp EEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTT
T ss_pred EEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCC
Confidence 9999999887 7999999999 77999999999999999977654 34555555555443 4456
Q ss_pred HHHHHHHHHHHH
Q 047219 495 RDIRDVCQQAER 506 (567)
Q Consensus 495 ~dL~~L~~~a~~ 506 (567)
.....++..+..
T Consensus 372 ~~ai~ll~~a~~ 383 (758)
T 3pxi_A 372 DKAIDLIDEAGS 383 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 666677766654
No 71
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=4e-14 Score=148.17 Aligned_cols=203 Identities=17% Similarity=0.182 Sum_probs=142.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCc--eEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPR--AVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~--~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
.+..++++|.+++++.+.+.+...+. ...+. +++|+||||||||++++++++.+.... +
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~-----------------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~--~ 73 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLR-----------------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT--T 73 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHH-----------------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC--C
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc-----------------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc--C
Confidence 34558899999999999988864321 23344 899999999999999999999985431 3
Q ss_pred cCeEEechhhHH------hhh---h-------ch-hHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHH
Q 047219 354 VPLMYVPLEVVM------SKY---Y-------GE-SERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRIL 416 (567)
Q Consensus 354 ~~~~~i~~~~l~------s~~---~-------G~-~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl 416 (567)
..++++++.... ..+ + +. .......+.........+.+|||||+|.+. ...+
T Consensus 74 ~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-----------~~~~ 142 (389)
T 1fnn_A 74 ARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-----------PDIL 142 (389)
T ss_dssp CEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-----------HHHH
T ss_pred eeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-----------hHHH
Confidence 457777754322 111 1 11 122222333333333335799999999983 1234
Q ss_pred HHHHHhhcCccc--CCcEEEEEeeCCC---CCCChHHHhccce-EEEecCCCHHHHHHHHHHHHHh------hCHHHHHH
Q 047219 417 SVLLRQIDGFEQ--DKKVVVIAATNRK---QDLDPALISRFDS-MITFGLPDHENRQEIAAQYAKH------LTKAELAE 484 (567)
Q Consensus 417 ~~LL~~ld~~~~--~~~viVIaaTN~~---~~Ld~aL~sRf~~-~I~i~~P~~~eR~eIL~~~~~~------~~~~~l~~ 484 (567)
..|+..++.... ..++.+|++||.+ ..+++.+.+||.. .+.|++++.++..+++...+.. +..+.++.
T Consensus 143 ~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 222 (389)
T 1fnn_A 143 STFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQM 222 (389)
T ss_dssp HHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHH
T ss_pred HHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Confidence 556666654322 2588999999887 6789999999964 8999999999999999988764 66778888
Q ss_pred HHHhcc--------CCCHHHHHHHHHHHHHHH
Q 047219 485 LATATE--------EMSGRDIRDVCQQAERSW 508 (567)
Q Consensus 485 la~~t~--------g~s~~dL~~L~~~a~~~a 508 (567)
++..++ +-..+.+..++..++..+
T Consensus 223 l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a 254 (389)
T 1fnn_A 223 IADITGAQTPLDTNRGDARLAIDILYRSAYAA 254 (389)
T ss_dssp HHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCCCCCCcHHHHHHHHHHHHHHH
Confidence 988884 335777888888877544
No 72
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.62 E-value=1.6e-16 Score=151.74 Aligned_cols=112 Identities=17% Similarity=0.171 Sum_probs=96.3
Q ss_pred hcchhhhH-HHHHHHhCCCCCCccceEEEEecceEEEEEEecC-CC----CcchHHHHHHHhhCceecccCCCceeEEEe
Q 047219 109 AKKERQRI-EELLKRKGMHYGSCPTFTVAVKGQKVTIKFQVPP-AC----EIPQLIANLVSHLGLKVEEHGGGSDMGLRA 182 (567)
Q Consensus 109 ~~~~~~~~-~~~~~~~g~~~g~~~~~~v~~~g~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~ 182 (567)
+|||++|| ++.|++||+.+||+ |+|+|++.++|++||+ .. +++++++.+|+|+|+++|| .|+|++
T Consensus 19 ~gr~ivrl~p~~m~~Lgl~~GD~----V~I~G~r~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD-----~V~V~~ 89 (185)
T 1cz4_A 19 PGMSRVRLDESSRRLLDAEIGDV----VEIEKVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGD-----KVKVRK 89 (185)
T ss_dssp CCSSEEEECHHHHHTTCCCTTCE----EEEESSSEEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTC-----EEEEEE
T ss_pred cCCCEEEECHHHHHHcCCCCCCE----EEEEcCCeEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCC-----EEEEEE
Confidence 79999999 69999999999999 9999999999999997 22 5789999999999999999 999999
Q ss_pred ecccccceeEecCCC---CccccCCCccccCcccccccchheeeeceeecCCCCceee
Q 047219 183 WDSAVAWQLTLKPPE---KQNESGGDRAQSGDMNAREGDLCILIFRSLITSDKPEIEF 237 (567)
Q Consensus 183 ~~~~~a~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 237 (567)
+++++|++|+|+|.. +.+.+.++. .++....+.++|+..||.+.+..
T Consensus 90 ~~~~~A~~V~l~P~~~~~~~~~~~~~~--------~~~l~~~l~~rpv~~Gd~v~v~~ 139 (185)
T 1cz4_A 90 VRTEIAKKVTLAPIIRKDQRLKFGEGI--------EEYVQRALIRRPMLEQDNISVPG 139 (185)
T ss_dssp ECCCBCSEEEEEEECSTTCCSCCCSSH--------HHHHHHHHTTCEECTTCEECCSS
T ss_pred CCCCCccEEEEecccccccccccccch--------HHHHHHHHCCCcccCCCEEEEee
Confidence 999999999999985 444443332 14556788899999999987654
No 73
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=1.7e-14 Score=151.02 Aligned_cols=196 Identities=25% Similarity=0.298 Sum_probs=134.1
Q ss_pred cccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCC-C
Q 047219 279 WENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQ-G 353 (567)
Q Consensus 279 ~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~-~ 353 (567)
.++++|.+++++.+.+.+...+. ...+.+++|+||||||||++|+++++++... .-. +
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~-----------------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 81 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK-----------------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKD 81 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT-----------------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTT
T ss_pred CCCCCChHHHHHHHHHHHHHHHc-----------------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCC
Confidence 47899999999999988764311 3456799999999999999999999987221 001 3
Q ss_pred cCeEEechhhHH-h----------hhh-------ch-hHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHH
Q 047219 354 VPLMYVPLEVVM-S----------KYY-------GE-SERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRR 414 (567)
Q Consensus 354 ~~~~~i~~~~l~-s----------~~~-------G~-~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~ 414 (567)
.+++++++.... + .+. +. ....+..++..+... +.+|||||+|.+..... .+
T Consensus 82 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~--~~vlilDEi~~l~~~~~-------~~ 152 (384)
T 2qby_B 82 VKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNI--RAIIYLDEVDTLVKRRG-------GD 152 (384)
T ss_dssp CEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSS--CEEEEEETTHHHHHSTT-------SH
T ss_pred ceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccC--CCEEEEECHHHhccCCC-------Cc
Confidence 467888876543 1 110 11 123344444444332 23999999999965421 11
Q ss_pred H-HHHHHHhhcCcccCCcEEEEEeeCCC---CCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh------hCHHHHHH
Q 047219 415 I-LSVLLRQIDGFEQDKKVVVIAATNRK---QDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH------LTKAELAE 484 (567)
Q Consensus 415 v-l~~LL~~ld~~~~~~~viVIaaTN~~---~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~------~~~~~l~~ 484 (567)
. +..|+... .++.+|++||.. ..+++.+++||+..++|++|+.++..+++...+.. +..+.++.
T Consensus 153 ~~l~~l~~~~------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 226 (384)
T 2qby_B 153 IVLYQLLRSD------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSY 226 (384)
T ss_dssp HHHHHHHTSS------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHH
T ss_pred eeHHHHhcCC------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHH
Confidence 2 33343332 688999999986 67999999999789999999999999999988763 44566777
Q ss_pred HHHhccC--CCHHHHHHHHHHHHH
Q 047219 485 LATATEE--MSGRDIRDVCQQAER 506 (567)
Q Consensus 485 la~~t~g--~s~~dL~~L~~~a~~ 506 (567)
++..+.+ -..+.+..++..++.
T Consensus 227 i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 227 IAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Confidence 7777662 234555566666654
No 74
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.61 E-value=3.6e-14 Score=148.04 Aligned_cols=190 Identities=21% Similarity=0.248 Sum_probs=136.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-CCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-WQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~~~ 353 (567)
.+.+|++++|++++++.+.+.+.. ...+..+||+||+|||||++|+++++.+.... ...
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~--------------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 70 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSL--------------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA 70 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHH--------------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS
T ss_pred CCCchhhccCcHHHHHHHHHHHHh--------------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC
Confidence 345789999999999999887752 34567899999999999999999999986431 111
Q ss_pred cC-----------------eEEechhhHHhhhhchhHHHHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHH
Q 047219 354 VP-----------------LMYVPLEVVMSKYYGESERLLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATR 413 (567)
Q Consensus 354 ~~-----------------~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~ 413 (567)
.+ ++.++... ......++.+++.+.. ...+.+|||||+|.+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~---------- 134 (373)
T 1jr3_A 71 TPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH---------- 134 (373)
T ss_dssp SCCSSSHHHHHHHTSCCSSCEEEETTC------SCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH----------
T ss_pred CCCcccHHHHHHhccCCCceEEecccc------cCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHH----------
Confidence 11 22222111 0011234455555442 223579999999998633
Q ss_pred HHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhc
Q 047219 414 RILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATAT 489 (567)
Q Consensus 414 ~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t 489 (567)
..+.|+..++. .+.++++|++|+.+..+.+.+++|| ..+++..|+.++..+++...++. +..+.+..++..+
T Consensus 135 -~~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~ 210 (373)
T 1jr3_A 135 -SFNALLKTLEE--PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 210 (373)
T ss_dssp -HHHHHHHHHHS--CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHS
T ss_pred -HHHHHHHHHhc--CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHC
Confidence 23455666653 4568899999999999999999999 89999999999999999988754 4566788888887
Q ss_pred cCCCHHHHHHHHHHHH
Q 047219 490 EEMSGRDIRDVCQQAE 505 (567)
Q Consensus 490 ~g~s~~dL~~L~~~a~ 505 (567)
.| +.+++.+++..++
T Consensus 211 ~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 211 EG-SLRDALSLTDQAI 225 (373)
T ss_dssp SS-CHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHH
Confidence 65 6777777776654
No 75
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.61 E-value=8.1e-15 Score=151.37 Aligned_cols=167 Identities=11% Similarity=0.082 Sum_probs=119.3
Q ss_pred ccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCC----CCCCcCeE
Q 047219 282 IAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAM----PWQGVPLM 357 (567)
Q Consensus 282 IiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~----~~~~~~~~ 357 (567)
|.|.+++++.+...+...+ ....+.+++|+||||||||++++++++++... ....+.++
T Consensus 22 L~~Re~E~~~i~~~L~~~i-----------------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v 84 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL-----------------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYI 84 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----------------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEE
T ss_pred cCCHHHHHHHHHHHHHHHh-----------------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEE
Confidence 6778888888877665432 25678999999999999999999999998422 11235678
Q ss_pred EechhhHHh----------hhhc------hhHHHHHHHHHHH-hcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHH
Q 047219 358 YVPLEVVMS----------KYYG------ESERLLGKVFSLA-NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLL 420 (567)
Q Consensus 358 ~i~~~~l~s----------~~~G------~~~~~l~~~f~~A-~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL 420 (567)
+++|..+.+ ++.| .....+...|... .....+.|+||||+|.|. . ++++..|+
T Consensus 85 ~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~--------q~~L~~l~ 154 (318)
T 3te6_A 85 HIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--S--------EKILQYFE 154 (318)
T ss_dssp EEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--C--------THHHHHHH
T ss_pred EEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--c--------chHHHHHH
Confidence 888754322 2222 3456677788765 122335899999999997 2 23445555
Q ss_pred HhhcCcccCCcEEEEEeeCCCCC----CChHHHhccc-eEEEecCCCHHHHHHHHHHHHHhh
Q 047219 421 RQIDGFEQDKKVVVIAATNRKQD----LDPALISRFD-SMITFGLPDHENRQEIAAQYAKHL 477 (567)
Q Consensus 421 ~~ld~~~~~~~viVIaaTN~~~~----Ld~aL~sRf~-~~I~i~~P~~~eR~eIL~~~~~~~ 477 (567)
.+.. ....++.||+++|..+. +++++++||. ..|.|++++.++..+|++..++.+
T Consensus 155 ~~~~--~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 155 KWIS--SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp HHHH--CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred hccc--ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 5443 24568999999998654 4556678996 589999999999999999988753
No 76
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.61 E-value=5e-15 Score=162.92 Aligned_cols=203 Identities=19% Similarity=0.215 Sum_probs=128.5
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhcc-ChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQ-SPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQ 352 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~-~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~ 352 (567)
..+.+|++|+|++.+++.+++.+..... .+..|+..+ ..+...++++||+||||||||++|+++|+++
T Consensus 33 yrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g-----~~~~~~~~~lLL~GppGtGKTtla~~la~~l------ 101 (516)
T 1sxj_A 33 YAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAG-----KDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL------ 101 (516)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCC-----TTSTTSCSEEEEECSTTSSHHHHHHHHHHHT------
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccC-----ccCCCCCcEEEEECCCCCCHHHHHHHHHHHc------
Confidence 3446899999999999999998874311 112222211 0112356899999999999999999999999
Q ss_pred CcCeEEechhhHHhhhhchhHH-------HHHHHHHHH----hcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHH
Q 047219 353 GVPLMYVPLEVVMSKYYGESER-------LLGKVFSLA----NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLR 421 (567)
Q Consensus 353 ~~~~~~i~~~~l~s~~~G~~~~-------~l~~~f~~A----~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~ 421 (567)
+.++++++++.+.+.......- .+..+|..+ .....++||||||+|.|....+.. +..|+.
T Consensus 102 ~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~--------l~~L~~ 173 (516)
T 1sxj_A 102 GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGG--------VGQLAQ 173 (516)
T ss_dssp TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTH--------HHHHHH
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHH--------HHHHHH
Confidence 6788999887655433211100 011222222 112346899999999998654322 233444
Q ss_pred hhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHH
Q 047219 422 QIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDI 497 (567)
Q Consensus 422 ~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL 497 (567)
.++. ....+++|+++.....+ +.+++|+ ..+.|+.|+.+++.+++...+.. +..+.+..++..+.| |+
T Consensus 174 ~l~~--~~~~iIli~~~~~~~~l-~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G----di 245 (516)
T 1sxj_A 174 FCRK--TSTPLILICNERNLPKM-RPFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DI 245 (516)
T ss_dssp HHHH--CSSCEEEEESCTTSSTT-GGGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CH
T ss_pred HHHh--cCCCEEEEEcCCCCccc-hhhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cH
Confidence 4432 22344554444333344 3466666 79999999999999999887654 456677888877654 44
Q ss_pred HHHHHH
Q 047219 498 RDVCQQ 503 (567)
Q Consensus 498 ~~L~~~ 503 (567)
+.+++.
T Consensus 246 R~~i~~ 251 (516)
T 1sxj_A 246 RQVINL 251 (516)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 77
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.60 E-value=2.6e-14 Score=145.72 Aligned_cols=188 Identities=16% Similarity=0.176 Sum_probs=130.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
..+.+|++++|++..++.+.+.+.. ...+ ++||+||||||||++|+++++.+.... ..
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~--------------------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~-~~ 72 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD--------------------GNMP-HMIISGMPGIGKTTSVHCLAHELLGRS-YA 72 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS--------------------CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGG-HH
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc--------------------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCc-cc
Confidence 3446799999999999999887641 2333 499999999999999999999863210 02
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHHh----c--CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLAN----E--LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE 427 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~----~--~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~ 427 (567)
.+++++++....+ ...++..+.... . ..++.+|||||+|.+....+ +.|+..++.
T Consensus 73 ~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~-----------~~L~~~le~-- 133 (323)
T 1sxj_B 73 DGVLELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ-----------QALRRTMEL-- 133 (323)
T ss_dssp HHEEEECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH-----------HTTHHHHHH--
T ss_pred CCEEEecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHH-----------HHHHHHHhc--
Confidence 3466666554211 123333333332 1 22358999999999965422 334444442
Q ss_pred cCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHH
Q 047219 428 QDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQ 503 (567)
Q Consensus 428 ~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~ 503 (567)
.+.++++|++||.+..+.+++++|| ..+.|+.|+.++..+++...+.. +..+.+..++..+.| +.+.+.+++..
T Consensus 134 ~~~~~~~il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~ 211 (323)
T 1sxj_B 134 YSNSTRFAFACNQSNKIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQS 211 (323)
T ss_dssp TTTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred cCCCceEEEEeCChhhchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 3467888999999999999999999 69999999999999999987753 456777888887765 34444444443
Q ss_pred H
Q 047219 504 A 504 (567)
Q Consensus 504 a 504 (567)
+
T Consensus 212 ~ 212 (323)
T 1sxj_B 212 T 212 (323)
T ss_dssp H
T ss_pred H
Confidence 3
No 78
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.59 E-value=5.6e-16 Score=147.73 Aligned_cols=111 Identities=12% Similarity=0.138 Sum_probs=91.9
Q ss_pred chhhhH-HHHHHHhCCCCCCccceEEEEecce--EEEEEEecCC---CCcchHHHHHHHhhCceecccCCCceeEEEee-
Q 047219 111 KERQRI-EELLKRKGMHYGSCPTFTVAVKGQK--VTIKFQVPPA---CEIPQLIANLVSHLGLKVEEHGGGSDMGLRAW- 183 (567)
Q Consensus 111 ~~~~~~-~~~~~~~g~~~g~~~~~~v~~~g~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~- 183 (567)
+|++|| ++.|++||+.+||+ |+|+|++ .|+|+|||+. .+++++++.+|+|+|+++|| .|+|+++
T Consensus 36 ~givrl~p~~m~~Lgl~~GD~----V~I~Gkr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD-----~V~V~~~~ 106 (187)
T 3tiw_A 36 NSVVSLSQPKMDELQLFRGDT----VLLKGKKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGD-----VISIQPCP 106 (187)
T ss_dssp TTEEEECHHHHHHHTCCTTCE----EEEECSTTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTC-----EEEEEECT
T ss_pred CcEEEECHHHHHHcCCCCCCE----EEEECCCCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCC-----EEEEEECC
Confidence 899999 69999999999999 9999998 8999999973 26799999999999999999 9999999
Q ss_pred cccccceeEecCCCCccc-cCCCccccCcccccccchheee--eceeecCCCCceee
Q 047219 184 DSAVAWQLTLKPPEKQNE-SGGDRAQSGDMNAREGDLCILI--FRSLITSDKPEIEF 237 (567)
Q Consensus 184 ~~~~a~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~ 237 (567)
++++|++|+|+|...++. +.++. ...+....+. ++|+..||.+.+..
T Consensus 107 ~v~~A~~V~LaP~~~~i~~i~~~~-------~~~~lk~~l~~~~rpV~~GD~i~v~~ 156 (187)
T 3tiw_A 107 DVKYGKRIHVLPIDDTVEGITGNL-------FEVYLKPYFLEAYRPIRKGDIFLVRG 156 (187)
T ss_dssp TCEECSEEEEEECCCC-----CCH-------HHHTHHHHHTTTCCEEETTCEEEEEC
T ss_pred CCCCceEEEEeccccchhhccchh-------HHHHHHHHhccCCceeeCCCEEEEcc
Confidence 899999999999866554 43330 0134556776 59999999987654
No 79
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.57 E-value=1.9e-13 Score=142.04 Aligned_cols=188 Identities=20% Similarity=0.325 Sum_probs=131.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcC
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVP 355 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~ 355 (567)
..+|++++|++.+++.+...+..... ...++.+++|+|||||||||+|+++++++ +.+
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~----------------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l------~~~ 78 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKM----------------RGEVLDHVLLAGPPGLGKTTLAHIIASEL------QTN 78 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHH----------------HTCCCCCEEEESSTTSSHHHHHHHHHHHH------TCC
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHh----------------cCCCCCeEEEECCCCCcHHHHHHHHHHHh------CCC
Confidence 34789999999888888776643200 03456789999999999999999999999 555
Q ss_pred eEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc--------
Q 047219 356 LMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE-------- 427 (567)
Q Consensus 356 ~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~-------- 427 (567)
+...+++.+.. ...+..++.. .....|+||||++.+.+..++.+ +..++...
T Consensus 79 ~~~~sg~~~~~------~~~l~~~~~~---~~~~~v~~iDE~~~l~~~~~e~L-----------~~~~~~~~~~i~~~~~ 138 (334)
T 1in4_A 79 IHVTSGPVLVK------QGDMAAILTS---LERGDVLFIDEIHRLNKAVEELL-----------YSAIEDFQIDIMIGKG 138 (334)
T ss_dssp EEEEETTTCCS------HHHHHHHHHH---CCTTCEEEEETGGGCCHHHHHHH-----------HHHHHTSCCCC-----
T ss_pred EEEEechHhcC------HHHHHHHHHH---ccCCCEEEEcchhhcCHHHHHHH-----------HHHHHhcccceeeccC
Confidence 66555543321 1122233322 22358999999999875322221 11111110
Q ss_pred --------cCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccCCCHH
Q 047219 428 --------QDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEEMSGR 495 (567)
Q Consensus 428 --------~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g~s~~ 495 (567)
....+.++++|+.+..+++.+++||...+.++.|+.+++.++++..++. +..+.+..++..+.| +++
T Consensus 139 ~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R 217 (334)
T 1in4_A 139 PSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPR 217 (334)
T ss_dssp ----------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHH
T ss_pred cccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChH
Confidence 1124778889999999999999999888999999999999999988764 467788888888776 567
Q ss_pred HHHHHHHHHHH
Q 047219 496 DIRDVCQQAER 506 (567)
Q Consensus 496 dL~~L~~~a~~ 506 (567)
.+..+++.+..
T Consensus 218 ~a~~ll~~~~~ 228 (334)
T 1in4_A 218 IAIRLTKRVRD 228 (334)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776654
No 80
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=1.2e-13 Score=143.82 Aligned_cols=209 Identities=19% Similarity=0.250 Sum_probs=139.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
+....++++|.++.++.+.+.+...+ ....+..++|+||||||||++++++++.+......+.
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~-----------------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~ 77 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLY-----------------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKF 77 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGG-----------------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSC
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHH-----------------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 34556899999999999887654221 1355678999999999999999999998732100034
Q ss_pred CeEEechhhHHh------hh----------hch-hHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHH
Q 047219 355 PLMYVPLEVVMS------KY----------YGE-SERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILS 417 (567)
Q Consensus 355 ~~~~i~~~~l~s------~~----------~G~-~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~ 417 (567)
.++++++..... .+ .+. .......++........+.+|||||++.+...... ..+.
T Consensus 78 ~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~-------~~l~ 150 (386)
T 2qby_A 78 KHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND-------DILY 150 (386)
T ss_dssp EEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS-------THHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC-------HHHH
Confidence 577787654321 11 111 22334444444444443689999999998754211 2334
Q ss_pred HHHHhhcCcccCCcEEEEEeeCCC---CCCChHHHhccc-eEEEecCCCHHHHHHHHHHHHHh------hCHHHHHHHHH
Q 047219 418 VLLRQIDGFEQDKKVVVIAATNRK---QDLDPALISRFD-SMITFGLPDHENRQEIAAQYAKH------LTKAELAELAT 487 (567)
Q Consensus 418 ~LL~~ld~~~~~~~viVIaaTN~~---~~Ld~aL~sRf~-~~I~i~~P~~~eR~eIL~~~~~~------~~~~~l~~la~ 487 (567)
.++..++.. ...++.+|++||.. ..+++.+.+||. ..+.+++++.++..+++...+.. +..+.++.++.
T Consensus 151 ~l~~~~~~~-~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~ 229 (386)
T 2qby_A 151 KLSRINSEV-NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAA 229 (386)
T ss_dssp HHHHHHHSC-CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHH
T ss_pred HHhhchhhc-CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence 555555433 34678899999876 468899999985 48999999999999999987652 45667777777
Q ss_pred hccC--CCHHHHHHHHHHHHHHH
Q 047219 488 ATEE--MSGRDIRDVCQQAERSW 508 (567)
Q Consensus 488 ~t~g--~s~~dL~~L~~~a~~~a 508 (567)
.+.. ..++.+..++..++..+
T Consensus 230 ~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 230 LAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHH
Confidence 7661 35666667777776543
No 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.55 E-value=1e-13 Score=144.06 Aligned_cols=192 Identities=14% Similarity=0.161 Sum_probs=124.4
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCC--
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPW-- 351 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~-- 351 (567)
..+.+|++++|++.+++.+++.+. .. ...+. ++|+||+|||||++++++++++.....
T Consensus 8 yrP~~~~~~vg~~~~~~~l~~~~~---~~----------------~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~ 67 (354)
T 1sxj_E 8 YRPKSLNALSHNEELTNFLKSLSD---QP----------------RDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYR 67 (354)
T ss_dssp TCCCSGGGCCSCHHHHHHHHTTTT---CT----------------TCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC
T ss_pred cCCCCHHHhcCCHHHHHHHHHHHh---hC----------------CCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCe
Confidence 345689999999999888776541 00 23344 999999999999999999997532100
Q ss_pred ---C------------------CcCeEEechhhHHhhhhchhHHHHHHHHHHHhc-------------CCCCcEEEEcCc
Q 047219 352 ---Q------------------GVPLMYVPLEVVMSKYYGESERLLGKVFSLANE-------------LPNGAIIFLDEV 397 (567)
Q Consensus 352 ---~------------------~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~-------------~a~~~ILfIDEI 397 (567)
. ..+++.++...... .....++..++.+.. ..++.+++|||+
T Consensus 68 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~ 143 (354)
T 1sxj_E 68 LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEA 143 (354)
T ss_dssp ------------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECT
T ss_pred EEecceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCc
Confidence 0 01122333221110 001123333333321 123569999999
Q ss_pred chhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh-
Q 047219 398 DSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH- 476 (567)
Q Consensus 398 D~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~- 476 (567)
+.|... ..+.|++.++.. +.++.+|.+||.+..+.+.+++|| ..+.|+.|+.++..+++...+..
T Consensus 144 ~~L~~~-----------~~~~L~~~le~~--~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~ 209 (354)
T 1sxj_E 144 NSLTKD-----------AQAALRRTMEKY--SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNE 209 (354)
T ss_dssp TSSCHH-----------HHHHHHHHHHHS--TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred cccCHH-----------HHHHHHHHHHhh--cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHc
Confidence 997533 223445555432 346889999999999999999999 89999999999999999988764
Q ss_pred ---hC-HHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 477 ---LT-KAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 477 ---~~-~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
+. .+.++.++..+.| +.+++..+++.+
T Consensus 210 ~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~ 240 (354)
T 1sxj_E 210 RIQLETKDILKRIAQASNG-NLRVSLLMLESM 240 (354)
T ss_dssp TCEECCSHHHHHHHHHHTT-CHHHHHHHHTHH
T ss_pred CCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 45 6778888877655 444444444433
No 82
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=2.2e-13 Score=141.45 Aligned_cols=176 Identities=21% Similarity=0.236 Sum_probs=120.7
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG 353 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~ 353 (567)
..+.+|++++|++.+++.|...+.. ...+ +++|+||||||||++|+++++.+....+ .
T Consensus 19 ~rp~~~~~~~g~~~~~~~L~~~i~~--------------------g~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~-~ 76 (340)
T 1sxj_C 19 YRPETLDEVYGQNEVITTVRKFVDE--------------------GKLP-HLLFYGPPGTGKTSTIVALAREIYGKNY-S 76 (340)
T ss_dssp TCCSSGGGCCSCHHHHHHHHHHHHT--------------------TCCC-CEEEECSSSSSHHHHHHHHHHHHHTTSH-H
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHhc--------------------CCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCc-c
Confidence 3456899999999999988877652 2333 4999999999999999999999743211 2
Q ss_pred cCeEEechhhHHhhhhchhHHHHHHHHHHHh-c----CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCccc
Q 047219 354 VPLMYVPLEVVMSKYYGESERLLGKVFSLAN-E----LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQ 428 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~-~----~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~ 428 (567)
..+..++.+... | ...++..+.... . .....+++|||+|.|.... .+.|+..++. .
T Consensus 77 ~~~~~~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~-----------~~~L~~~le~--~ 137 (340)
T 1sxj_C 77 NMVLELNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAA-----------QNALRRVIER--Y 137 (340)
T ss_dssp HHEEEECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHH-----------HHHHHHHHHH--T
T ss_pred ceEEEEcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHH-----------HHHHHHHHhc--C
Confidence 235555554321 1 112222222211 1 1225899999999996442 2345555553 3
Q ss_pred CCcEEEEEeeCCCCCCChHHHhccceEEEecCCCHHHHHHHHHHHHHh----hCHHHHHHHHHhccC
Q 047219 429 DKKVVVIAATNRKQDLDPALISRFDSMITFGLPDHENRQEIAAQYAKH----LTKAELAELATATEE 491 (567)
Q Consensus 429 ~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~----~~~~~l~~la~~t~g 491 (567)
+..+.+|.+||.+..+.+++++|| ..+.|..++.++..+.+...++. +....+..++..+.|
T Consensus 138 ~~~~~~il~~n~~~~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 138 TKNTRFCVLANYAHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp TTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred CCCeEEEEEecCccccchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 467788889999999999999999 68999999999999988887742 455666666666544
No 83
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.50 E-value=3.5e-13 Score=140.00 Aligned_cols=163 Identities=14% Similarity=0.132 Sum_probs=114.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC------------------cCeEEechhhHHhhhhchhHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG------------------VPLMYVPLEVVMSKYYGESERLLGKVF 380 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~------------------~~~~~i~~~~l~s~~~G~~~~~l~~~f 380 (567)
.+.++.+||+||||||||++|+++++.+....... .++..+....- +. ....+.++.++
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~ 97 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVT 97 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHH
Confidence 45677899999999999999999999986432100 22333332200 00 01224466666
Q ss_pred HHHhcC---CCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEE
Q 047219 381 SLANEL---PNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMIT 457 (567)
Q Consensus 381 ~~A~~~---a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~ 457 (567)
+.+... +...|++|||+|.|... ..+.|++.++. .+.++++|.+||.++.+.+.+++|| ..++
T Consensus 98 ~~~~~~~~~~~~kvviIdead~l~~~-----------a~naLLk~lEe--p~~~~~~Il~t~~~~~l~~ti~SRc-~~~~ 163 (334)
T 1a5t_A 98 EKLNEHARLGGAKVVWVTDAALLTDA-----------AANALLKTLEE--PPAETWFFLATREPERLLATLRSRC-RLHY 163 (334)
T ss_dssp HHTTSCCTTSSCEEEEESCGGGBCHH-----------HHHHHHHHHTS--CCTTEEEEEEESCGGGSCHHHHTTS-EEEE
T ss_pred HHHhhccccCCcEEEEECchhhcCHH-----------HHHHHHHHhcC--CCCCeEEEEEeCChHhCcHHHhhcc-eeee
Confidence 665532 24589999999999633 34667777774 5568999999999999999999999 7899
Q ss_pred ecCCCHHHHHHHHHHHHHhhCHHHHHHHHHhccCCCHHHHHHH
Q 047219 458 FGLPDHENRQEIAAQYAKHLTKAELAELATATEEMSGRDIRDV 500 (567)
Q Consensus 458 i~~P~~~eR~eIL~~~~~~~~~~~l~~la~~t~g~s~~dL~~L 500 (567)
|+.|+.++..+++.... .+..+.+..++..+.| +.+.+..+
T Consensus 164 ~~~~~~~~~~~~L~~~~-~~~~~~~~~l~~~s~G-~~r~a~~~ 204 (334)
T 1a5t_A 164 LAPPPEQYAVTWLSREV-TMSQDALLAALRLSAG-SPGAALAL 204 (334)
T ss_dssp CCCCCHHHHHHHHHHHC-CCCHHHHHHHHHHTTT-CHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 99999999999888765 4566677777777655 34444333
No 84
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.49 E-value=1.5e-14 Score=158.15 Aligned_cols=187 Identities=17% Similarity=0.167 Sum_probs=111.9
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV 359 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i 359 (567)
..|+|++++++.+...+. ...++||+||||||||++|+++|+.+... .+|..+
T Consensus 22 ~~ivGq~~~i~~l~~al~-----------------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~----~~f~~~ 74 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL-----------------------SGESVFLLGPPGIAKSLIARRLKFAFQNA----RAFEYL 74 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH-----------------------HTCEEEEECCSSSSHHHHHHHGGGGBSSC----CEEEEE
T ss_pred hhhHHHHHHHHHHHHHHh-----------------------cCCeeEeecCchHHHHHHHHHHHHHHhhh----hHHHHH
Confidence 358899999887765543 23689999999999999999999988532 223333
Q ss_pred chhh-HHhhhhch----hHHHHHHHHHHHhcC--CCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcC-------
Q 047219 360 PLEV-VMSKYYGE----SERLLGKVFSLANEL--PNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDG------- 425 (567)
Q Consensus 360 ~~~~-l~s~~~G~----~~~~l~~~f~~A~~~--a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~------- 425 (567)
.+.. ..+.++|. .... ...|..+... +.++|||||||+.+.++.+. .|+..|+.
T Consensus 75 ~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~-----------~LL~~lee~~v~i~G 142 (500)
T 3nbx_X 75 MTRFSTPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGPAILN-----------TLLTAINERQFRNGA 142 (500)
T ss_dssp CCTTCCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHH-----------HHHHHHHSSEEECSS
T ss_pred HHhcCCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcHHHHH-----------HHHHHHHHHhccCCC
Confidence 3321 11233331 1111 1122211111 02468999999988755443 34444432
Q ss_pred --cccCCcEEEEEeeCCCC---CCChHHHhccceEEEecCCCH-HHHHHHHHHHHH------------------------
Q 047219 426 --FEQDKKVVVIAATNRKQ---DLDPALISRFDSMITFGLPDH-ENRQEIAAQYAK------------------------ 475 (567)
Q Consensus 426 --~~~~~~viVIaaTN~~~---~Ld~aL~sRf~~~I~i~~P~~-~eR~eIL~~~~~------------------------ 475 (567)
...+.. ++|+|||+.. .+.+++++||...+.++.|+. +++.+|+.....
T Consensus 143 ~~~~~~~~-~iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~ 221 (500)
T 3nbx_X 143 HVEKIPMR-LLVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEI 221 (500)
T ss_dssp SEEECCCC-EEEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHH
T ss_pred CcCCcchh-hhhhccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcC
Confidence 112233 4577778532 366799999988899999987 678888865431
Q ss_pred -h--hCHHHHHHHHHhc---------cCCCHHHHHHHHHHHHH
Q 047219 476 -H--LTKAELAELATAT---------EEMSGRDIRDVCQQAER 506 (567)
Q Consensus 476 -~--~~~~~l~~la~~t---------~g~s~~dL~~L~~~a~~ 506 (567)
. ++++..+.++... .+.+++.+..+++.+..
T Consensus 222 ~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A 264 (500)
T 3nbx_X 222 GEITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQA 264 (500)
T ss_dssp TTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHH
T ss_pred CcccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHH
Confidence 1 2333344444333 47788888888776653
No 85
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.46 E-value=1.6e-15 Score=169.46 Aligned_cols=180 Identities=24% Similarity=0.282 Sum_probs=97.3
Q ss_pred ccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC---cCe
Q 047219 280 ENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG---VPL 356 (567)
Q Consensus 280 ~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~---~~~ 356 (567)
..|+|++.+++.+...+.. ..+.... . .......++||+||||||||++|+++|+.+++..+.. ..+
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~-------~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~ 364 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLE-------D-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTA 364 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETT-------T-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTT
T ss_pred chhcChHHHHHHHHHHHhC--CCccccc-------C-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCcccc
Confidence 4689999887766332210 0000000 0 0123445899999999999999999999885431110 111
Q ss_pred EEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEE
Q 047219 357 MYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIA 436 (567)
Q Consensus 357 ~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIa 436 (567)
..+.+........|..... ...+..| .++|+||||||.+....+..+++++++..-.+.........+.++.||+
T Consensus 365 ~~l~~~~~~~~~~g~~~~~-~G~l~~A----~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIa 439 (595)
T 3f9v_A 365 AGLTAAVVREKGTGEYYLE-AGALVLA----DGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIA 439 (595)
T ss_dssp TTSEEECSSGGGTSSCSEE-ECHHHHH----SSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEE
T ss_pred ccccceeeecccccccccc-CCeeEec----CCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEE
Confidence 1111111111111111000 0112222 3699999999999866544433332210000000011112346789999
Q ss_pred eeCCCC-------------CCChHHHhccceEEEe-cCCCHHHHHHHHHHHHH
Q 047219 437 ATNRKQ-------------DLDPALISRFDSMITF-GLPDHENRQEIAAQYAK 475 (567)
Q Consensus 437 aTN~~~-------------~Ld~aL~sRf~~~I~i-~~P~~~eR~eIL~~~~~ 475 (567)
|||+.. .++++|++|||..+.+ +.|+.+ ...+.+..+.
T Consensus 440 atNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~ 491 (595)
T 3f9v_A 440 AGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILD 491 (595)
T ss_dssp EECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHT
T ss_pred EcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHH
Confidence 999876 8999999999865444 566666 7777666554
No 86
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.38 E-value=5.8e-12 Score=129.48 Aligned_cols=149 Identities=11% Similarity=0.132 Sum_probs=106.8
Q ss_pred CcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhh
Q 047219 284 GYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEV 363 (567)
Q Consensus 284 G~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~ 363 (567)
|++++++.++..+.. .. ..++||+||||||||++|+++++.+....-...++..++.+.
T Consensus 1 g~~~~~~~L~~~i~~--------------------~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~ 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEK--------------------SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG 59 (305)
T ss_dssp ---CHHHHHHHHHHT--------------------CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS
T ss_pred ChHHHHHHHHHHHHC--------------------CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc
Confidence 567777777776652 23 678999999999999999999987421100134567776542
Q ss_pred HHhhhhchhHHHHHHHHHHHhcC---CCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC
Q 047219 364 VMSKYYGESERLLGKVFSLANEL---PNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR 440 (567)
Q Consensus 364 l~s~~~G~~~~~l~~~f~~A~~~---a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~ 440 (567)
.. ..-+.++.+.+.+... +...|+||||+|.|... ..+.|++.++. .+.++++|.+||.
T Consensus 60 ---~~--~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~-----------a~naLLk~LEe--p~~~t~fIl~t~~ 121 (305)
T 2gno_A 60 ---EN--IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-----------AANAFLKALEE--PPEYAVIVLNTRR 121 (305)
T ss_dssp ---SC--BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-----------HHHHTHHHHHS--CCTTEEEEEEESC
T ss_pred ---CC--CCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH-----------HHHHHHHHHhC--CCCCeEEEEEECC
Confidence 01 1223466677766543 23579999999999643 34667777773 5678899999998
Q ss_pred CCCCChHHHhccceEEEecCCCHHHHHHHHHHHH
Q 047219 441 KQDLDPALISRFDSMITFGLPDHENRQEIAAQYA 474 (567)
Q Consensus 441 ~~~Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~ 474 (567)
+..+.+++++| .++|..|+.++..+.+...+
T Consensus 122 ~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 122 WHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred hHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 99999999999 89999999999998888766
No 87
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.34 E-value=3.2e-12 Score=143.20 Aligned_cols=116 Identities=20% Similarity=0.287 Sum_probs=69.9
Q ss_pred CCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhc-----------CcccCCcEEEEEeeCCC--CCCChHHHhccc-
Q 047219 388 NGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQID-----------GFEQDKKVVVIAATNRK--QDLDPALISRFD- 453 (567)
Q Consensus 388 ~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld-----------~~~~~~~viVIaaTN~~--~~Ld~aL~sRf~- 453 (567)
.+++|||||++.|.+..+..+.+.+++- .+ .... ....+.+++||++||+. ..++++|++||.
T Consensus 201 ~~gvL~LDEi~~l~~~~q~~Ll~~Le~~--~~-~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v 277 (604)
T 3k1j_A 201 HKGVLFIDEIATLSLKMQQSLLTAMQEK--KF-PITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALRSRIRG 277 (604)
T ss_dssp TTSEEEETTGGGSCHHHHHHHHHHHHHS--EE-CCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHHHHHHH
T ss_pred CCCEEEEechhhCCHHHHHHHHHHHHcC--cE-EecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHHHHhhc
Confidence 4689999999999766554444333220 00 0000 11224588999999986 679999999995
Q ss_pred --eEEEecCC---CHHHHHHHHHHHHHh---------hCHHHHHHHHHhc---cCC------CHHHHHHHHHHHHH
Q 047219 454 --SMITFGLP---DHENRQEIAAQYAKH---------LTKAELAELATAT---EEM------SGRDIRDVCQQAER 506 (567)
Q Consensus 454 --~~I~i~~P---~~~eR~eIL~~~~~~---------~~~~~l~~la~~t---~g~------s~~dL~~L~~~a~~ 506 (567)
..+.|+.. ..+....++..+.+. +..+.+..+.... .|. +.+++.++++.|..
T Consensus 278 ~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~ 353 (604)
T 3k1j_A 278 YGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGD 353 (604)
T ss_dssp HSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHH
T ss_pred cceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHH
Confidence 34454321 344555555444321 3455666665543 342 67888888887653
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.31 E-value=3.2e-11 Score=127.19 Aligned_cols=211 Identities=15% Similarity=0.106 Sum_probs=132.3
Q ss_pred CCCcccccCcHHHHHHHHHHH-HHhccChhhHHhhhhcccccccCCCCceEEe--eCCCCCcHHHHHHHHHHHhCCC---
Q 047219 276 EISWENIAGYDQQKREIEDTI-LLSLQSPEVYDDIARGTRCKFESNRPRAVLF--EGPPGTGKTSCARVIANQAGAM--- 349 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i-~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL--~GppGTGKT~LAraIA~~l~~~--- 349 (567)
....++++|.++.++.+.+.+ ......+ ...+..++| +||||||||++++++++.+...
T Consensus 18 ~~~p~~l~gR~~el~~l~~~l~~~~~~~~---------------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~ 82 (412)
T 1w5s_A 18 NYIPPELRVRRGEAEALARIYLNRLLSGA---------------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAK 82 (412)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSS---------------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHhHHHhcCC---------------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 344578999999999999887 5431110 135678999 9999999999999999887321
Q ss_pred CCCCcCeEEechhh------HHhhhh----------ch-hHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHH
Q 047219 350 PWQGVPLMYVPLEV------VMSKYY----------GE-SERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEAT 412 (567)
Q Consensus 350 ~~~~~~~~~i~~~~------l~s~~~----------G~-~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~ 412 (567)
...+..++++++.. +...+. +. ....+..+.........+.+|+|||+|.+...... .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-~---- 157 (412)
T 1w5s_A 83 EGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-A---- 157 (412)
T ss_dssp TTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-C----
T ss_pred cCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-c----
Confidence 00124566776532 111111 11 11222222222222223579999999998642100 0
Q ss_pred HHHHHHHHHhhcCcc-cC--CcEEEEEeeCCCC---CCC---hHHHhccceEEEecCCCHHHHHHHHHHHHH------hh
Q 047219 413 RRILSVLLRQIDGFE-QD--KKVVVIAATNRKQ---DLD---PALISRFDSMITFGLPDHENRQEIAAQYAK------HL 477 (567)
Q Consensus 413 ~~vl~~LL~~ld~~~-~~--~~viVIaaTN~~~---~Ld---~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~------~~ 477 (567)
...+..++..+.... .. .++.+|++||.++ .++ +.+.++|...+.++.++.++..+++...+. .+
T Consensus 158 ~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~ 237 (412)
T 1w5s_A 158 AEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW 237 (412)
T ss_dssp HHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC
T ss_pred hHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC
Confidence 122333444443322 12 6788888887554 344 677788866799999999999999987765 25
Q ss_pred CHHHHHHHHHhcc------CCCHHHHHHHHHHHHHH
Q 047219 478 TKAELAELATATE------EMSGRDIRDVCQQAERS 507 (567)
Q Consensus 478 ~~~~l~~la~~t~------g~s~~dL~~L~~~a~~~ 507 (567)
..+.+..+...+. | .++.+..++..++..
T Consensus 238 ~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~ 272 (412)
T 1w5s_A 238 EPRHLELISDVYGEDKGGDG-SARRAIVALKMACEM 272 (412)
T ss_dssp CHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHH
Confidence 5677888888877 5 577777888776643
No 89
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.30 E-value=2.5e-12 Score=156.39 Aligned_cols=163 Identities=19% Similarity=0.215 Sum_probs=113.7
Q ss_pred CCCCCCcccccCcHHHHHHHHHHHHHhccC----------hhhHHh------hh-hccccccc-CCCCce--EEeeCCCC
Q 047219 273 SKSEISWENIAGYDQQKREIEDTILLSLQS----------PEVYDD------IA-RGTRCKFE-SNRPRA--VLFEGPPG 332 (567)
Q Consensus 273 ~~~~~~~~dIiG~~~~k~~L~e~i~~~l~~----------pelf~~------l~-~~~~~~~~-~~~p~~--VLL~GppG 332 (567)
+...++|+++.|.+++++.+.+.+++++.+ ++.|+. .| ...+..++ ..+|++ +|||||||
T Consensus 1013 ~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1013 SASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred ccCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 445689999999999999999999999854 556654 11 00112222 334444 99999999
Q ss_pred CcHHHHHHHHHHHhCCCCCCCcCeEEechhhHH------------hhhhch----hHHHHHHHHHHHhcCCCCcEEEEcC
Q 047219 333 TGKTSCARVIANQAGAMPWQGVPLMYVPLEVVM------------SKYYGE----SERLLGKVFSLANELPNGAIIFLDE 396 (567)
Q Consensus 333 TGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~------------s~~~G~----~~~~l~~~f~~A~~~a~~~ILfIDE 396 (567)
||||+||++++.+.... +-++++|+.++.. ++|+++ +++.++.+|..|+..+ ++++|+||
T Consensus 1093 ~GKT~la~~~~~~~~~~---g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~-~~~i~~d~ 1168 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA-VDVIVVDS 1168 (1706)
T ss_dssp SSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC-CSEEEESC
T ss_pred CChHHHHHHHHHHhhhc---CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcC-CeEEEeCc
Confidence 99999999999988443 4566666665433 566677 8999999999898877 49999999
Q ss_pred cchhhhhhhhh------hHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC
Q 047219 397 VDSFAVARDSE------MHEATRRILSVLLRQIDGFEQDKKVVVIAATNR 440 (567)
Q Consensus 397 ID~L~~~~q~~------l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~ 440 (567)
++.|.+.+... ......|++++++..+++.....+|+|| +||+
T Consensus 1169 ~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1169 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp GGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred hHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 99999885321 1256678899999999988777888888 7776
No 90
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.29 E-value=3.7e-13 Score=127.67 Aligned_cols=112 Identities=12% Similarity=0.042 Sum_probs=92.5
Q ss_pred cchhhhH-HHHHHHhCCCCCCccceEEEEecceEEEEEEecCCC-------CcchHHHHHHHhhCceecccCCCceeEEE
Q 047219 110 KKERQRI-EELLKRKGMHYGSCPTFTVAVKGQKVTIKFQVPPAC-------EIPQLIANLVSHLGLKVEEHGGGSDMGLR 181 (567)
Q Consensus 110 ~~~~~~~-~~~~~~~g~~~g~~~~~~v~~~g~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~v~ 181 (567)
.++++|| +++|++||+.+||+ |+|+|++++++++|++.. ++++|++.+|+|+|+++|| +|+|+
T Consensus 23 ~~~~vrL~~~~~~~L~~~~gd~----VeI~g~~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd-----~V~V~ 93 (179)
T 1wlf_A 23 RDCFLHLPRRLVAQLHLLQNQA----IEVASDHQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGD-----QVFLR 93 (179)
T ss_dssp SSSCEEECHHHHHHTTCCTTCC----EEEESSSCCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTC-----EEEEE
T ss_pred CCcEEECCHHHHHHcCCCCCcE----EEEEeCCeeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCC-----EEEEE
Confidence 7889999 59999999999999 999999999999998732 4789999999999999999 99999
Q ss_pred e-ecccccceeEecCCCCc-cccCCCccccCcccccccchheeee--ceeecCCCCceeee
Q 047219 182 A-WDSAVAWQLTLKPPEKQ-NESGGDRAQSGDMNAREGDLCILIF--RSLITSDKPEIEFI 238 (567)
Q Consensus 182 ~-~~~~~a~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~ 238 (567)
+ ++++.|++|+|+|.+.. ..+.+.. + ++....+++ +|+..||.+.+...
T Consensus 94 ~~~~~~~A~~V~laP~~~dD~ei~e~~--a------~~le~~Ll~QiR~v~~G~~i~v~~~ 146 (179)
T 1wlf_A 94 PCSHVVSCQQVEVEPLSADDWEILELH--A------ISLEQHLLDQIRIVFPKAVVPIWVD 146 (179)
T ss_dssp ECSCCEECSEEEEEESSHHHHHHHHHS--C------SSHHHHHHHHCCEECTTCEEEEESS
T ss_pred ECCCCccceEEEEEcCCcCCeEEehhH--H------HHHHHHHhcCceeccCCCEEEEEec
Confidence 9 89999999999998420 2232221 2 344577888 99999998876554
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.08 E-value=2.8e-10 Score=106.89 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=63.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhC-CCCCCC
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAG-AMPWQG 353 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~-~~~~~~ 353 (567)
...+|+++++.+...+.+.+.+......- ....+.+++|+||||||||++++++++.+. .. +
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~---g 67 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHNF--------------NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK---G 67 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHSC--------------CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS---C
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHhc--------------cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc---C
Confidence 44688888875443333333333221111 134468899999999999999999999873 21 4
Q ss_pred cCeEEechhhHHhhhhchhHH-HHHHHHHHHhcCCCCcEEEEcCcchh
Q 047219 354 VPLMYVPLEVVMSKYYGESER-LLGKVFSLANELPNGAIIFLDEVDSF 400 (567)
Q Consensus 354 ~~~~~i~~~~l~s~~~G~~~~-~l~~~f~~A~~~a~~~ILfIDEID~L 400 (567)
..+.+++..++...+...... .....+.... .+.+|+|||++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~llilDE~~~~ 112 (180)
T 3ec2_A 68 IRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVL---NSPVLVLDDLGSE 112 (180)
T ss_dssp CCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHH---TCSEEEEETCSSS
T ss_pred CeEEEEEHHHHHHHHHHHhcCchHHHHHHHhc---CCCEEEEeCCCCC
Confidence 456677777766554322111 0011222222 2579999999854
No 92
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.99 E-value=1e-09 Score=138.83 Aligned_cols=142 Identities=14% Similarity=0.241 Sum_probs=92.1
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhc--------------C
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANE--------------L 386 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~--------------~ 386 (567)
..+++||+||||||||++|+.+..... +..+..++++...+. ..+...++.... .
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~-----~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~ 1334 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSS-----LYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSD 1334 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCS-----SCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSS
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCC
Confidence 458999999999999999966555442 445666665543321 122223332110 1
Q ss_pred CCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcc-------cCCcEEEEEeeCCCC-----CCChHHHhccce
Q 047219 387 PNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFE-------QDKKVVVIAATNRKQ-----DLDPALISRFDS 454 (567)
Q Consensus 387 a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~-------~~~~viVIaaTN~~~-----~Ld~aL~sRf~~ 454 (567)
...+|||||||+.-...+.+. ....+.+.+++....-.. .-.++.+|||||+++ .++++|+||| .
T Consensus 1335 gk~~VlFiDEinmp~~d~yg~--q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~ 1411 (2695)
T 4akg_A 1335 IKNLVLFCDEINLPKLDKYGS--QNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-A 1411 (2695)
T ss_dssp SSCEEEEEETTTCSCCCSSSC--CHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-E
T ss_pred CceEEEEecccccccccccCc--hhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-e
Confidence 123699999998644332111 112334455553211111 114689999999984 7999999999 9
Q ss_pred EEEecCCCHHHHHHHHHHHHHh
Q 047219 455 MITFGLPDHENRQEIAAQYAKH 476 (567)
Q Consensus 455 ~I~i~~P~~~eR~eIL~~~~~~ 476 (567)
++.++.|+.+++..|+..+++.
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 93
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.95 E-value=1.7e-09 Score=103.11 Aligned_cols=109 Identities=14% Similarity=0.168 Sum_probs=65.7
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
...+|+++++.+...+.+.+.+..++... . ....+.+++|+||||||||++|+++++.+... +.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~---~~ 83 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY------E-------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKR---NV 83 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC------C-------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT---TC
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh------h-------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CC
Confidence 34689999887644443333333221110 0 01234899999999999999999999998544 55
Q ss_pred CeEEechhhHHhhhhchh-HHHHHHHHHHHhcCCCCcEEEEcCcchhhh
Q 047219 355 PLMYVPLEVVMSKYYGES-ERLLGKVFSLANELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 355 ~~~~i~~~~l~s~~~G~~-~~~l~~~f~~A~~~a~~~ILfIDEID~L~~ 402 (567)
++.+++++.+...+.... ...+...+..... ..+|||||++....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~lilDei~~~~~ 129 (202)
T 2w58_A 84 SSLIVYVPELFRELKHSLQDQTMNEKLDYIKK---VPVLMLDDLGAEAM 129 (202)
T ss_dssp CEEEEEHHHHHHHHHHC---CCCHHHHHHHHH---SSEEEEEEECCC--
T ss_pred eEEEEEhHHHHHHHHHHhccchHHHHHHHhcC---CCEEEEcCCCCCcC
Confidence 788888887765543211 0111223333332 36999999977543
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.89 E-value=1.7e-09 Score=99.28 Aligned_cols=110 Identities=16% Similarity=0.252 Sum_probs=69.0
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSF 400 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L 400 (567)
....++|+||+|+|||+|++++++..... +..+++++..++... .+ . . .+.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~---g~~~~~~~~~~~~~~----------~~---~-~--~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA---GKNAAYIDAASMPLT----------DA---A-F--EAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT---TCCEEEEETTTSCCC----------GG---G-G--GCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEcHHHhhHH----------HH---H-h--CCCEEEEeCcccc
Confidence 45789999999999999999999988532 556778877665442 00 1 1 2479999999987
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeC-CCCCCC--hHHHhccceEEEecC
Q 047219 401 AVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATN-RKQDLD--PALISRFDSMITFGL 460 (567)
Q Consensus 401 ~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN-~~~~Ld--~aL~sRf~~~I~i~~ 460 (567)
....+. .+...++.....+..++|.||| .+..+. ++|++||.....+.+
T Consensus 96 ~~~~~~-----------~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 96 GNEEQA-----------LLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp CSHHHH-----------HHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred ChHHHH-----------HHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 654321 1222222222223332444555 444332 999999966555543
No 95
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.88 E-value=1e-07 Score=97.72 Aligned_cols=187 Identities=13% Similarity=0.150 Sum_probs=110.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcC
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVP 355 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~ 355 (567)
....+.++|.++.++.|.+ +. . ..++|+||+|+|||++++.+++... ..
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~----------------------~--~~v~i~G~~G~GKT~L~~~~~~~~~------~~ 57 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LR----------------------A--PITLVLGLRRTGKSSIIKIGINELN------LP 57 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TC----------------------S--SEEEEEESTTSSHHHHHHHHHHHHT------CC
T ss_pred CCCHHHhcChHHHHHHHHH-hc----------------------C--CcEEEECCCCCCHHHHHHHHHHhcC------CC
Confidence 3456789999999888876 52 2 4899999999999999999999873 23
Q ss_pred eEEechhhH-----------Hhhh---h--------------ch------------------hHHHHHHHHHHHhcCC-C
Q 047219 356 LMYVPLEVV-----------MSKY---Y--------------GE------------------SERLLGKVFSLANELP-N 388 (567)
Q Consensus 356 ~~~i~~~~l-----------~s~~---~--------------G~------------------~~~~l~~~f~~A~~~a-~ 388 (567)
++++++... ...+ . +. ....+..+++...... .
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 137 (357)
T 2fna_A 58 YIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKD 137 (357)
T ss_dssp EEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSS
T ss_pred EEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCC
Confidence 555554432 0000 0 00 0112334444444332 2
Q ss_pred CcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC---------CCChHHHhccceEEEec
Q 047219 389 GAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ---------DLDPALISRFDSMITFG 459 (567)
Q Consensus 389 ~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~---------~Ld~aL~sRf~~~I~i~ 459 (567)
+.+|+|||++.+............ ..+... ..++.+|.+++... .....+..|+...+.+.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l----~~~~~~------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~ 207 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPAL----AYAYDN------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELK 207 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHH----HHHHHH------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEEC
T ss_pred CeEEEEECHHHhhccCchhHHHHH----HHHHHc------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecC
Confidence 589999999998642111111222 222211 13566776665432 11223455665789999
Q ss_pred CCCHHHHHHHHHHHHHh--hCHHHHHHHHHhccCCCHHHHHHHHHHH
Q 047219 460 LPDHENRQEIAAQYAKH--LTKAELAELATATEEMSGRDIRDVCQQA 504 (567)
Q Consensus 460 ~P~~~eR~eIL~~~~~~--~~~~~l~~la~~t~g~s~~dL~~L~~~a 504 (567)
..+.++..+++...+.. ........+...+.|+ +..+..++...
T Consensus 208 ~l~~~e~~~~l~~~~~~~~~~~~~~~~i~~~t~G~-P~~l~~~~~~~ 253 (357)
T 2fna_A 208 PFSREEAIEFLRRGFQEADIDFKDYEVVYEKIGGI-PGWLTYFGFIY 253 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSC-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCcHHHHHHHhCCC-HHHHHHHHHHH
Confidence 99999999999876642 2222236666776664 55666665543
No 96
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.88 E-value=3.2e-10 Score=121.70 Aligned_cols=154 Identities=17% Similarity=0.206 Sum_probs=89.7
Q ss_pred ccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHH-HHHhCCCCCCCcCeEEec
Q 047219 282 IAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVI-ANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 282 IiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraI-A~~l~~~~~~~~~~~~i~ 360 (567)
|.|++.+|+.|.-.+... ++. .+...+|||.|+||| ||++|+++ ++.+++.. +....
T Consensus 215 I~G~e~vK~aLll~L~GG--~~k--------------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~-----ft~g~ 272 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSC--VGK--------------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV-----YVDLR 272 (506)
T ss_dssp STTCHHHHHHHHHHHTTC--CSS--------------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE-----EEEGG
T ss_pred cCCCHHHHHHHHHHHcCC--ccc--------------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeE-----EecCC
Confidence 899999877665433110 000 123448999999999 99999999 88764421 11111
Q ss_pred hh---hHHhhhhch--hHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEE
Q 047219 361 LE---VVMSKYYGE--SERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVI 435 (567)
Q Consensus 361 ~~---~l~s~~~G~--~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVI 435 (567)
++ .+.....+. ..-.-+ .+. .+.++++|||||+.+.++.|..+++++++-.-.+ .+...+.++.||
T Consensus 273 ~ss~~gLt~s~r~~tG~~~~~G-~l~----LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI----~G~~lparf~VI 343 (506)
T 3f8t_A 273 RTELTDLTAVLKEDRGWALRAG-AAV----LADGGILAVDHLEGAPEPHRWALMEAMDKGTVTV----DGIALNARCAVL 343 (506)
T ss_dssp GCCHHHHSEEEEESSSEEEEEC-HHH----HTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEE----TTEEEECCCEEE
T ss_pred CCCccCceEEEEcCCCcccCCC-eeE----EcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEE----CCEEcCCCeEEE
Confidence 10 111111000 000001 112 2347999999999999888888877765521111 122456789999
Q ss_pred EeeCCCC-----------CCChHHHhccceEEEe-cCCCHHHH
Q 047219 436 AATNRKQ-----------DLDPALISRFDSMITF-GLPDHENR 466 (567)
Q Consensus 436 aaTN~~~-----------~Ld~aL~sRf~~~I~i-~~P~~~eR 466 (567)
||+|+.. .|++++++|||..+.+ +.|+.+.-
T Consensus 344 AA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d 386 (506)
T 3f8t_A 344 AAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEP 386 (506)
T ss_dssp EEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC-------
T ss_pred EEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHh
Confidence 9999864 7899999999775544 66665543
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.86 E-value=2e-07 Score=95.37 Aligned_cols=191 Identities=15% Similarity=0.169 Sum_probs=114.4
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCc
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGV 354 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~ 354 (567)
+...-+.++|.++.++.|.+.+.. ...++|+||+|+|||++++.+++.. +
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~-----------------------~~~v~i~G~~G~GKT~Ll~~~~~~~------~- 56 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN-----------------------YPLTLLLGIRRVGKSSLLRAFLNER------P- 56 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH-----------------------CSEEEEECCTTSSHHHHHHHHHHHS------S-
T ss_pred CCCChHhcCChHHHHHHHHHHHhc-----------------------CCeEEEECCCcCCHHHHHHHHHHHc------C-
Confidence 334557799999999999887641 1689999999999999999999886 2
Q ss_pred CeEEechhhHH------------hhh---hch---------------------hHHHHHHHHHH----HhcCCCCcEEEE
Q 047219 355 PLMYVPLEVVM------------SKY---YGE---------------------SERLLGKVFSL----ANELPNGAIIFL 394 (567)
Q Consensus 355 ~~~~i~~~~l~------------s~~---~G~---------------------~~~~l~~~f~~----A~~~a~~~ILfI 394 (567)
++++++.... ..+ .+. ....+..+++. +.... +.+|+|
T Consensus 57 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~vlvl 134 (350)
T 2qen_A 57 -GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELG-EFIVAF 134 (350)
T ss_dssp -EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHS-CEEEEE
T ss_pred -cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccC-CEEEEE
Confidence 5566554321 000 000 00112222222 22222 589999
Q ss_pred cCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC---------CCChHHHhccceEEEecCCCHHH
Q 047219 395 DEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ---------DLDPALISRFDSMITFGLPDHEN 465 (567)
Q Consensus 395 DEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~---------~Ld~aL~sRf~~~I~i~~P~~~e 465 (567)
||++.+........ ......+....+. ..++.+|.++.... .....+..|+...+++.+.+.++
T Consensus 135 De~~~~~~~~~~~~----~~~~~~L~~~~~~---~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e 207 (350)
T 2qen_A 135 DEAQYLRFYGSRGG----KELLALFAYAYDS---LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDT 207 (350)
T ss_dssp ETGGGGGGBTTTTT----HHHHHHHHHHHHH---CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHH
T ss_pred eCHHHHhccCccch----hhHHHHHHHHHHh---cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHH
Confidence 99999864100000 0111222222221 13566666664321 12233455665689999999999
Q ss_pred HHHHHHHHHHh----hCHHHHHHHHHhccCCCHHHHHHHHHHHH
Q 047219 466 RQEIAAQYAKH----LTKAELAELATATEEMSGRDIRDVCQQAE 505 (567)
Q Consensus 466 R~eIL~~~~~~----~~~~~l~~la~~t~g~s~~dL~~L~~~a~ 505 (567)
-.+++...+.. +..+.+..+...+.|+ +.-+..++...|
T Consensus 208 ~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~-P~~l~~~~~~~~ 250 (350)
T 2qen_A 208 SVEFLKRGFREVNLDVPENEIEEAVELLDGI-PGWLVVFGVEYL 250 (350)
T ss_dssp HHHHHHHHHHTTTCCCCHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCC-HHHHHHHHHHHh
Confidence 99999876643 4566778888887764 666777665433
No 98
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.79 E-value=2.2e-09 Score=110.27 Aligned_cols=75 Identities=12% Similarity=0.197 Sum_probs=50.0
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC-CCCCCCcCeEEechhhHHhhhhchh-HHHHHHHHHHHhcCCCCcEEEEcCcc
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG-AMPWQGVPLMYVPLEVVMSKYYGES-ERLLGKVFSLANELPNGAIIFLDEVD 398 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~-~~~~~~~~~~~i~~~~l~s~~~G~~-~~~l~~~f~~A~~~a~~~ILfIDEID 398 (567)
.+.+++|+||||||||+||+++++++. .. +.++.+++++.+...+.... .......+..... ..+|||||++
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~~~~~---g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~---~~lLiiDdig 224 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHELSEKK---GVSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKN---VPVLILDDIG 224 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHHHHHS---CCCEEEEEHHHHHHHHHCCCC----CCTTHHHHT---SSEEEEETCC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHhc---CCcEEEEEHHHHHHHHHHHhccchHHHHHHHhcC---CCEEEEcCCC
Confidence 368999999999999999999999885 43 56788888887776554321 1111122222221 4699999997
Q ss_pred hhh
Q 047219 399 SFA 401 (567)
Q Consensus 399 ~L~ 401 (567)
...
T Consensus 225 ~~~ 227 (308)
T 2qgz_A 225 AEQ 227 (308)
T ss_dssp C--
T ss_pred CCC
Confidence 654
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.75 E-value=1.1e-07 Score=120.79 Aligned_cols=137 Identities=18% Similarity=0.233 Sum_probs=101.0
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSF 400 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L 400 (567)
...++++.||+|||||.+++++|+.+ +.+|+.++|++-+.. ..++.+|..+... ++++++|||+.+
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~l------g~~~v~~nc~e~ld~------~~lg~~~~g~~~~--Gaw~~~DE~nr~ 709 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNL------GRVVVVFNCDDSFDY------QVLSRLLVGITQI--GAWGCFDEFNRL 709 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTT------TCCCEEEETTSSCCH------HHHHHHHHHHHHH--TCEEEEETTTSS
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHh------CCcEEEEECCCCCCh------hHhhHHHHHHHhc--CCEeeehhhhhc
Confidence 45788999999999999999999999 778999999865541 3456677766654 689999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhh-------cCcccCCcEEEEEeeCC----CCCCChHHHhccceEEEecCCCHHHHHHH
Q 047219 401 AVARDSEMHEATRRILSVLLRQI-------DGFEQDKKVVVIAATNR----KQDLDPALISRFDSMITFGLPDHENRQEI 469 (567)
Q Consensus 401 ~~~~q~~l~~~~~~vl~~LL~~l-------d~~~~~~~viVIaaTN~----~~~Ld~aL~sRf~~~I~i~~P~~~eR~eI 469 (567)
.....+.+......+...+.... ..+..+.++.|++|.|+ ...|+++|++|| +.+.+..|+.+...+|
T Consensus 710 ~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei 788 (2695)
T 4akg_A 710 DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEM 788 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHH
Confidence 87654444333333333322111 11234567889999995 457999999999 8999999999999888
Q ss_pred HHH
Q 047219 470 AAQ 472 (567)
Q Consensus 470 L~~ 472 (567)
+-.
T Consensus 789 ~l~ 791 (2695)
T 4akg_A 789 ILQ 791 (2695)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 100
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.60 E-value=1.8e-08 Score=103.65 Aligned_cols=118 Identities=19% Similarity=0.217 Sum_probs=65.0
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech--hhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCc
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL--EVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEV 397 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~--~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEI 397 (567)
.+...++|+||||||||+||.+++... +..+.+++. ++..+.+....+..+..+++...+. . +||||++
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~------G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~--~-LLVIDsI 191 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEAL------GGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH--R-VIVIDSL 191 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHH------HTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC--S-EEEEECC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhC------CCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC--C-EEEEecc
Confidence 345668999999999999999999873 223333333 2222222233445555555555543 2 9999999
Q ss_pred chhhhhhhhh-hHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChH
Q 047219 398 DSFAVARDSE-MHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPA 447 (567)
Q Consensus 398 D~L~~~~q~~-l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~a 447 (567)
+.+....... ......+.+.+++..+.++....++.+|+++|+ ...+++
T Consensus 192 ~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp-~s~dea 241 (331)
T 2vhj_A 192 KNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP-TSNDDK 241 (331)
T ss_dssp TTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC-SSCSSS
T ss_pred cccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC-cccchh
Confidence 9986543321 000011223444444444333456788888884 444444
No 101
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.48 E-value=2.7e-07 Score=88.96 Aligned_cols=109 Identities=19% Similarity=0.276 Sum_probs=62.3
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSF 400 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L 400 (567)
..+++||+||||||||++|.++++.+.... ..+ ++... .+ . +. ......+++|||+|.-
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i---~~f--ans~s---~f-~---------l~---~l~~~kIiiLDEad~~ 115 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAV---ISF--VNSTS---HF-W---------LE---PLTDTKVAMLDDATTT 115 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTCEE---CCC--CCSSS---CG-G---------GG---GGTTCSSEEEEEECHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCe---eeE--Eeccc---hh-h---------hc---ccCCCCEEEEECCCch
Confidence 346799999999999999999999984220 011 11100 00 0 01 1112469999999842
Q ss_pred hhhhhhhhHHHHHHHHHHHHHhhcCcc------cC-----CcEEEEEeeCC---CCCCChHHHhccceEEEecCC
Q 047219 401 AVARDSEMHEATRRILSVLLRQIDGFE------QD-----KKVVVIAATNR---KQDLDPALISRFDSMITFGLP 461 (567)
Q Consensus 401 ~~~~q~~l~~~~~~vl~~LL~~ld~~~------~~-----~~viVIaaTN~---~~~Ld~aL~sRf~~~I~i~~P 461 (567)
. .+.+++ .+...+++.. .. ....+|.|||. .+.--+.|.+|+ .++.|+.|
T Consensus 116 ~-------~~~~d~---~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~ 179 (212)
T 1tue_A 116 C-------WTYFDT---YMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNA 179 (212)
T ss_dssp H-------HHHHHH---HCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSC
T ss_pred h-------HHHHHH---HHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCC
Confidence 1 112222 2333444421 01 13477888986 333447899999 78888644
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.41 E-value=1.1e-06 Score=112.29 Aligned_cols=135 Identities=18% Similarity=0.200 Sum_probs=101.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCcchhh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEVDSFA 401 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~ 401 (567)
..+..+.||+|||||.+++.+|+.+ +.+|+.++|++-+.- ..++.+|..+... |+..++|||+.+.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~l------gr~~~vfnC~~~~d~------~~~g~i~~G~~~~--GaW~cfDEfNrl~ 669 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQL------GRFVLVFCCDEGFDL------QAMSRIFVGLCQC--GAWGCFDEFNRLE 669 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHT------TCCEEEEECSSCCCH------HHHHHHHHHHHHH--TCEEEEETTTSSC
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHh------CCeEEEEeCCCCCCH------HHHHHHHhhHhhc--CcEEEehhhhcCC
Confidence 4566799999999999999999999 778999998764431 3455666666554 6899999999997
Q ss_pred hhhhhhhHHHHHHHHHHHHHh--------hcCcccCCcEEEEEeeCC----CCCCChHHHhccceEEEecCCCHHHHHHH
Q 047219 402 VARDSEMHEATRRILSVLLRQ--------IDGFEQDKKVVVIAATNR----KQDLDPALISRFDSMITFGLPDHENRQEI 469 (567)
Q Consensus 402 ~~~q~~l~~~~~~vl~~LL~~--------ld~~~~~~~viVIaaTN~----~~~Ld~aL~sRf~~~I~i~~P~~~eR~eI 469 (567)
...-+.....++.+...+... ...+..+..+.+++|.|+ ...|++.|+.|| +.+.+..||.+...+|
T Consensus 670 ~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei 748 (3245)
T 3vkg_A 670 ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQV 748 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHH
Confidence 665554444444444444332 222344567899999996 457999999999 8899999999999888
Q ss_pred HH
Q 047219 470 AA 471 (567)
Q Consensus 470 L~ 471 (567)
+-
T Consensus 749 ~L 750 (3245)
T 3vkg_A 749 ML 750 (3245)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 103
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.41 E-value=2e-07 Score=89.74 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=76.8
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCC-CC-CCC-cCeEEechhhHHhhhh-------------ch--hHHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGA-MP-WQG-VPLMYVPLEVVMSKYY-------------GE--SERLLGKVFSLA 383 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~-~~-~~~-~~~~~i~~~~l~s~~~-------------G~--~~~~l~~~f~~A 383 (567)
+.-.|++|+||||||++|.+.+..... .+ ..+ .+++..+...+..... ++ ....+..++..+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 446889999999999999887555310 00 013 3444444443322111 10 011122221111
Q ss_pred hcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecCCCH
Q 047219 384 NELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGLPDH 463 (567)
Q Consensus 384 ~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~P~~ 463 (567)
. ..+++|+|||++.+.+.+.... +. ..++..++.. .....-+|.+|+++..++.+++.|+...+++..|..
T Consensus 85 ~--~~~~vliIDEAq~l~~~~~~~~-e~-----~rll~~l~~~-r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~ 155 (199)
T 2r2a_A 85 E--NIGSIVIVDEAQDVWPARSAGS-KI-----PENVQWLNTH-RHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKM 155 (199)
T ss_dssp G--GTTCEEEETTGGGTSBCCCTTC-CC-----CHHHHGGGGT-TTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSS
T ss_pred c--cCceEEEEEChhhhccCccccc-hh-----HHHHHHHHhc-CcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCccc
Confidence 2 1268999999999965442211 11 1234444432 334567788888899999999999988888877654
Q ss_pred H
Q 047219 464 E 464 (567)
Q Consensus 464 ~ 464 (567)
.
T Consensus 156 ~ 156 (199)
T 2r2a_A 156 G 156 (199)
T ss_dssp C
T ss_pred C
Confidence 3
No 104
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.34 E-value=3.7e-06 Score=86.87 Aligned_cols=147 Identities=18% Similarity=0.123 Sum_probs=94.8
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHh---cCCCCcEEEEcC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLAN---ELPNGAIIFLDE 396 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~---~~a~~~ILfIDE 396 (567)
+.+..+||+||+|+||++.++.+++.+....+.....+.++.. ..++.+++.+. -.++..+++|||
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~ 84 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLL 84 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEEC
Confidence 4567899999999999999999998763221111122233321 11233333332 234468999999
Q ss_pred cch-hhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCC------CCCChHHHhccceEEEecCCCHHHHHHH
Q 047219 397 VDS-FAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRK------QDLDPALISRFDSMITFGLPDHENRQEI 469 (567)
Q Consensus 397 ID~-L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~------~~Ld~aL~sRf~~~I~i~~P~~~eR~eI 469 (567)
+|. +... ..+.|+..++. .+.++++|.+++.. ..+.+++.+|+ ..+++..++.++....
T Consensus 85 ~~~kl~~~-----------~~~aLl~~le~--p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~ 150 (343)
T 1jr3_D 85 PENGPNAA-----------INEQLLTLTGL--LHDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRW 150 (343)
T ss_dssp CSSCCCTT-----------HHHHHHHHHTT--CBTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHH
T ss_pred CCCCCChH-----------HHHHHHHHHhc--CCCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHH
Confidence 998 7533 23456666664 34456666555442 34678889999 8999999999998888
Q ss_pred HHHHHHh----hCHHHHHHHHHhccC
Q 047219 470 AAQYAKH----LTKAELAELATATEE 491 (567)
Q Consensus 470 L~~~~~~----~~~~~l~~la~~t~g 491 (567)
+...++. +..+.+..++..+.|
T Consensus 151 l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 151 VAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 8887764 456666666665543
No 105
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.31 E-value=3.5e-06 Score=107.87 Aligned_cols=142 Identities=15% Similarity=0.266 Sum_probs=87.2
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHH----hc----------
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLA----NE---------- 385 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A----~~---------- 385 (567)
...++|||+||||||||.+++.....+. +.+++.++++...+. ..+...++.. ..
T Consensus 1302 ~~~~pvLL~GptGtGKT~li~~~L~~l~-----~~~~~~infS~~Tta------~~l~~~~e~~~e~~~~~~~G~~~~p~ 1370 (3245)
T 3vkg_A 1302 SEHRPLILCGPPGSGKTMTLTSTLRAFP-----DFEVVSLNFSSATTP------ELLLKTFDHHCEYKRTPSGETVLRPT 1370 (3245)
T ss_dssp HTTCCCEEESSTTSSHHHHHHHHGGGCT-----TEEEEEECCCTTCCH------HHHHHHHHHHEEEEECTTSCEEEEES
T ss_pred HCCCcEEEECCCCCCHHHHHHHHHHhCC-----CCceEEEEeeCCCCH------HHHHHHHhhcceEEeccCCCcccCCC
Confidence 3468999999999999987765544442 344566666543321 1122222210 00
Q ss_pred -CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCc-------ccCCcEEEEEeeCCCC-----CCChHHHhcc
Q 047219 386 -LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGF-------EQDKKVVVIAATNRKQ-----DLDPALISRF 452 (567)
Q Consensus 386 -~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~-------~~~~~viVIaaTN~~~-----~Ld~aL~sRf 452 (567)
.....|+||||++.-....-+.. ..-+.+.+++....-+ ..-.++.+|||+|++. .++++|.+||
T Consensus 1371 ~~Gk~~VlFiDDiNmp~~D~yGtQ--~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1371 QLGKWLVVFCDEINLPSTDKYGTQ--RVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp STTCEEEEEETTTTCCCCCTTSCC--HHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred cCCceEEEEecccCCCCccccccc--cHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Confidence 11235999999985332211111 1123344444332111 1225789999999874 5999999999
Q ss_pred ceEEEecCCCHHHHHHHHHHHHH
Q 047219 453 DSMITFGLPDHENRQEIAAQYAK 475 (567)
Q Consensus 453 ~~~I~i~~P~~~eR~eIL~~~~~ 475 (567)
.++.++.|+.+....|+..++.
T Consensus 1449 -~vi~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1449 -PILLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp -CEEECCCCCHHHHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHHH
Confidence 8899999999999999876654
No 106
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.26 E-value=1.8e-06 Score=106.75 Aligned_cols=116 Identities=20% Similarity=0.250 Sum_probs=78.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH----Hhhhhc------------hhHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV----MSKYYG------------ESERLLGKVFSL 382 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l----~s~~~G------------~~~~~l~~~f~~ 382 (567)
..++.+++|+||||||||+||.+++.+.... +..+.+++.+.. ..+..| ..+..+..++..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~---G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~l 1500 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 1500 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHH
Confidence 5678999999999999999999999887543 456777776532 222233 234555666666
Q ss_pred HhcCCCCcEEEEcCcchhhhhhhh------hhHHHHHHHHHHHHHhhcCcccCCcEEEEEee
Q 047219 383 ANELPNGAIIFLDEVDSFAVARDS------EMHEATRRILSVLLRQIDGFEQDKKVVVIAAT 438 (567)
Q Consensus 383 A~~~a~~~ILfIDEID~L~~~~q~------~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaT 438 (567)
++..+ +++|||||++.+.+..+. .......+++.+++..+.+.....++.+|++-
T Consensus 1501 vr~~~-~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1501 ARSGA-VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HHHTC-CSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HhcCC-CCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 66565 599999999987764321 01111345667777777776666777776664
No 107
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.10 E-value=1.1e-05 Score=80.81 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=23.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.++++|+||||||||++|++||+.+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4679999999999999999999976
No 108
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.95 E-value=2.7e-05 Score=73.29 Aligned_cols=24 Identities=33% Similarity=0.722 Sum_probs=21.7
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.+.|.||+|+|||||++.|+..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999873
No 109
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.74 E-value=2.5e-05 Score=63.29 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=47.4
Q ss_pred cCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q 047219 459 GLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQAERSWASK 511 (567)
Q Consensus 459 ~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r 511 (567)
++|+.++|.+||+.+++++. ..++..++..+.||||+||.++|++|.+.++++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 57999999999999998864 347999999999999999999999999887765
No 110
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.69 E-value=0.00019 Score=77.19 Aligned_cols=103 Identities=20% Similarity=0.279 Sum_probs=75.7
Q ss_pred CcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC-------------CCCCChHHHhccceE
Q 047219 389 GAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR-------------KQDLDPALISRFDSM 455 (567)
Q Consensus 389 ~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~-------------~~~Ld~aL~sRf~~~ 455 (567)
++|+||||+|.|.. ..++.|++.++.. +.++ +|.+||+ +..+++.+++|| ..
T Consensus 296 ~~VliIDEa~~l~~-----------~a~~aLlk~lEe~--~~~~-~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~-~~ 360 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI-----------ECFTYLHRALESS--IAPI-VIFASNRGNCVIRGTEDITSPHGIPLDLLDRV-MI 360 (456)
T ss_dssp ECEEEEESGGGCBH-----------HHHHHHHHHTTST--TCCE-EEEEECCSEEECBTTSSCEEETTCCHHHHTTE-EE
T ss_pred ceEEEEechhhcCH-----------HHHHHHHHHhhcc--CCCE-EEEecCCccccccccccccccccCChhHHhhc-ce
Confidence 37999999999963 3557778888853 3345 4444433 668999999999 55
Q ss_pred EEecCCCHHHHHHHHHHHHH----hhCHHHHHHHHHhccCCCHHHHHHHHHHHHH
Q 047219 456 ITFGLPDHENRQEIAAQYAK----HLTKAELAELATATEEMSGRDIRDVCQQAER 506 (567)
Q Consensus 456 I~i~~P~~~eR~eIL~~~~~----~~~~~~l~~la~~t~g~s~~dL~~L~~~a~~ 506 (567)
+.|+.|+.++..++++..+. .+..+.+..++......+++....++..+..
T Consensus 361 ~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~ 415 (456)
T 2c9o_A 361 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANL 415 (456)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 79999999999999998775 2567777778777622367776677766543
No 111
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.68 E-value=0.00094 Score=73.65 Aligned_cols=180 Identities=14% Similarity=0.101 Sum_probs=97.9
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhC--CCCCC-Cc
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAG--AMPWQ-GV 354 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~--~~~~~-~~ 354 (567)
....++|.+..++.|.+.+... ....+.++|+|++|+|||+||+.+++... ...|. ++
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~-------------------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v 182 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL-------------------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGV 182 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS-------------------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCE
T ss_pred CCCeecccHHHHHHHHHHHhcc-------------------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCce
Confidence 3456899999999998876421 23456799999999999999999875321 01111 12
Q ss_pred CeEEechh---hHHhhh------hc-----------hhHHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHH
Q 047219 355 PLMYVPLE---VVMSKY------YG-----------ESERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRR 414 (567)
Q Consensus 355 ~~~~i~~~---~l~s~~------~G-----------~~~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~ 414 (567)
-++.+... .+...+ .+ ..+.....+.........+.+|+||+++...
T Consensus 183 ~wv~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~------------- 249 (591)
T 1z6t_A 183 HWVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW------------- 249 (591)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------
T ss_pred EEEECCCCchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------
Confidence 22223221 111111 11 0111122222222222235899999998531
Q ss_pred HHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEe---cCCCHHHHHHHHHHHHHh---hCHHHHHHHHHh
Q 047219 415 ILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITF---GLPDHENRQEIAAQYAKH---LTKAELAELATA 488 (567)
Q Consensus 415 vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i---~~P~~~eR~eIL~~~~~~---~~~~~l~~la~~ 488 (567)
.+..+ ..++.||.||........ + + ...+.+ +..+.++-.+++...+.. -..+....+.+.
T Consensus 250 ----~l~~l-----~~~~~ilvTsR~~~~~~~-~--~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~ 316 (591)
T 1z6t_A 250 ----VLKAF-----DSQCQILLTTRDKSVTDS-V--M-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKE 316 (591)
T ss_dssp ----HHHTT-----CSSCEEEEEESCGGGGTT-C--C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHH
T ss_pred ----HHHHh-----cCCCeEEEECCCcHHHHh-c--C-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHH
Confidence 11111 245677777764331110 0 0 233444 367888888888877643 113466778888
Q ss_pred ccCCCHHHHHHHHHH
Q 047219 489 TEEMSGRDIRDVCQQ 503 (567)
Q Consensus 489 t~g~s~~dL~~L~~~ 503 (567)
+.|. +-.|+.+...
T Consensus 317 ~~G~-PLal~~~a~~ 330 (591)
T 1z6t_A 317 CKGS-PLVVSLIGAL 330 (591)
T ss_dssp HTTC-HHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHH
Confidence 7764 5566655544
No 112
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.67 E-value=1.2e-05 Score=84.75 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=59.6
Q ss_pred cCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhchhHHHHHHHHHHHhcCCCCcEEEEcCc
Q 047219 318 ESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYGESERLLGKVFSLANELPNGAIIFLDEV 397 (567)
Q Consensus 318 ~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G~~~~~l~~~f~~A~~~a~~~ILfIDEI 397 (567)
+..++..++|+||||+||||++++++.... ..++.+....-... ..++.+| ...++++||+
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~------g~~~~~~~~~~~~~------~~lg~~~-------q~~~~l~dd~ 225 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCG------GKALNVNLPLDRLN------FELGVAI-------DQFLVVFEDV 225 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC------CEEECCSSCTTTHH------HHHGGGT-------TCSCEEETTC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcC------CcEEEEeccchhHH------HHHHHhc-------chhHHHHHHH
Confidence 367778999999999999999999999873 23333222211000 0111111 2367899999
Q ss_pred chhhhh-hhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHh
Q 047219 398 DSFAVA-RDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALIS 450 (567)
Q Consensus 398 D~L~~~-~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~s 450 (567)
+.+... +......... ....+...+++ .+.+++++|+++.+ +++++
T Consensus 226 ~~~~~~~r~l~~~~~~~-~~~~l~~~ldG-----~v~v~~~tn~~~~l-~alf~ 272 (377)
T 1svm_A 226 KGTGGESRDLPSGQGIN-NLDNLRDYLDG-----SVKVNLEKKHLNKR-TQIFP 272 (377)
T ss_dssp CCSTTTTTTCCCCSHHH-HHHTTHHHHHC-----SSCEEECCSSSCCE-EECCC
T ss_pred HHHHHHHhhccccCcch-HHHHHHHHhcC-----CCeEeeccCchhhH-HHhhc
Confidence 988641 1100000000 11233333432 35667788888777 45554
No 113
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.64 E-value=2.5e-05 Score=64.72 Aligned_cols=55 Identities=20% Similarity=0.328 Sum_probs=48.0
Q ss_pred ecCCCHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Q 047219 458 FGLPDHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQAERSWASKI 512 (567)
Q Consensus 458 i~~P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r~ 512 (567)
-.+|+.++|.+||+.+++++. ..+++.+++.|.||||+||.++|++|.+.++++.
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~ 65 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 358999999999999998764 3478999999999999999999999998877653
No 114
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.56 E-value=0.0011 Score=72.87 Aligned_cols=172 Identities=8% Similarity=0.051 Sum_probs=93.5
Q ss_pred cCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHH---hCCCCCCCcCeEEe
Q 047219 283 AGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQ---AGAMPWQGVPLMYV 359 (567)
Q Consensus 283 iG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~---l~~~~~~~~~~~~i 359 (567)
+|.+..+++|.+.+... .......|.|+|+.|+|||+||+.+++. --...|...-++.+
T Consensus 131 ~GR~~~~~~l~~~L~~~------------------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~v 192 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM------------------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKD 192 (549)
T ss_dssp CCCHHHHHHHHHHHHHH------------------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEEC
T ss_pred CCchHHHHHHHHHHhcc------------------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEE
Confidence 59999999999887421 0224577889999999999999999972 22233433334444
Q ss_pred chh------hHHhhhh---chh-------------HHHHHHHHHHHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHH
Q 047219 360 PLE------VVMSKYY---GES-------------ERLLGKVFSLANELPNGAIIFLDEVDSFAVARDSEMHEATRRILS 417 (567)
Q Consensus 360 ~~~------~l~s~~~---G~~-------------~~~l~~~f~~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~ 417 (567)
+.. .+..... +.. ...+...+.......+..+|+||+++.... .
T Consensus 193 s~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~------------~-- 258 (549)
T 2a5y_B 193 SGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET------------I-- 258 (549)
T ss_dssp CCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH------------H--
T ss_pred CCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchh------------h--
Confidence 332 1111110 100 111222222222222258999999987420 0
Q ss_pred HHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhcc---ceEEEecCCCHHHHHHHHHHHHHhhC-----HHHHHHHHHhc
Q 047219 418 VLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRF---DSMITFGLPDHENRQEIAAQYAKHLT-----KAELAELATAT 489 (567)
Q Consensus 418 ~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf---~~~I~i~~P~~~eR~eIL~~~~~~~~-----~~~l~~la~~t 489 (567)
.+.. ..+..||.||.... +...+ ...+.++..+.++-.+++..++..-. .+...++++.+
T Consensus 259 ~~~~-------~~gs~ilvTTR~~~-----v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c 326 (549)
T 2a5y_B 259 RWAQ-------ELRLRCLVTTRDVE-----ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELS 326 (549)
T ss_dssp HHHH-------HTTCEEEEEESBGG-----GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHH
T ss_pred cccc-------cCCCEEEEEcCCHH-----HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHh
Confidence 1111 13456777776422 22222 24688888898888888877642211 12345566665
Q ss_pred cCCCHHHHHH
Q 047219 490 EEMSGRDIRD 499 (567)
Q Consensus 490 ~g~s~~dL~~ 499 (567)
.|. |-.|+.
T Consensus 327 ~Gl-PLAl~~ 335 (549)
T 2a5y_B 327 SGN-PATLMM 335 (549)
T ss_dssp TTC-HHHHHH
T ss_pred CCC-hHHHHH
Confidence 553 434443
No 115
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.50 E-value=0.00029 Score=66.98 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=28.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLE 362 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~ 362 (567)
..++.-++|+||||+|||++++.++... +..+++++.+
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~------~~~v~~i~~~ 54 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLS------GKKVAYVDTE 54 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHH------CSEEEEEESS
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHc------CCcEEEEECC
Confidence 4566779999999999999999999832 3345555543
No 116
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.50 E-value=0.00014 Score=75.94 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=49.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhh----HHhhhhch-----------hHHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEV----VMSKYYGE-----------SERLLGKVFSLA 383 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~----l~s~~~G~-----------~~~~l~~~f~~A 383 (567)
..+...++|+|+||+|||++|..++...... +..+++++.+. .....+|. ....+..++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l 136 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 136 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHH
Confidence 4566779999999999999999998876322 44577776632 11111111 112223333322
Q ss_pred hcCCCCcEEEEcCcchhhh
Q 047219 384 NELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 384 ~~~a~~~ILfIDEID~L~~ 402 (567)
.......+|+||.+..+..
T Consensus 137 ~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 137 ARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHTCCSEEEEECGGGCCC
T ss_pred HhccCCCEEEEcCHHHhcc
Confidence 2222358999999999874
No 117
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.49 E-value=0.00016 Score=89.64 Aligned_cols=83 Identities=18% Similarity=0.215 Sum_probs=55.3
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhh----ch-----------hHHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYY----GE-----------SERLLGKVFSLA 383 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~----G~-----------~~~~l~~~f~~A 383 (567)
...+..++|+||||||||+||.+++.+.... +.++.+++.++....++ |. .......+.+..
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~---Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l 1154 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 1154 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHH
Confidence 5677889999999999999999999877544 66788888775433332 10 011122222222
Q ss_pred hcCCCCcEEEEcCcchhhhhh
Q 047219 384 NELPNGAIIFLDEVDSFAVAR 404 (567)
Q Consensus 384 ~~~a~~~ILfIDEID~L~~~~ 404 (567)
.+...+.+|+||++..|.+..
T Consensus 1155 ~~~~~~dlvVIDsl~~L~~~~ 1175 (2050)
T 3cmu_A 1155 ARSGAVDVIVVDSVAALTPKA 1175 (2050)
T ss_dssp HHHTCCSEEEESCGGGCCCHH
T ss_pred HHhCCCCEEEECCcccccccc
Confidence 222335899999999996543
No 118
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.46 E-value=0.00011 Score=76.65 Aligned_cols=80 Identities=25% Similarity=0.303 Sum_probs=48.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHH----hhhhc------------hhHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVM----SKYYG------------ESERLLGKVFSL 382 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~----s~~~G------------~~~~~l~~~f~~ 382 (567)
..+..-++|+||||+|||+||..++...... +..+.+++.+.-. ...+| ..+..+. +...
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~-~~~~ 133 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALE-IADM 133 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH-HHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHH-HHHH
Confidence 4456779999999999999999998765322 3456666554311 11112 1122222 2222
Q ss_pred HhcCCCCcEEEEcCcchhhh
Q 047219 383 ANELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 383 A~~~a~~~ILfIDEID~L~~ 402 (567)
......+.+|+||++..+..
T Consensus 134 l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHTTTCCSEEEEECGGGCCC
T ss_pred HHhcCCCCEEEEcChHhhcc
Confidence 22222358999999999874
No 119
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.43 E-value=6.6e-05 Score=70.94 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=19.0
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.-++++||+|+|||+++..++..+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999985555443
No 120
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.43 E-value=0.00021 Score=68.35 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=23.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++..++|.||+|+|||++++.++...
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456779999999999999999999654
No 121
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.42 E-value=0.00026 Score=74.13 Aligned_cols=81 Identities=21% Similarity=0.233 Sum_probs=49.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhh----hhch-----------hHHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSK----YYGE-----------SERLLGKVFSLA 383 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~----~~G~-----------~~~~l~~~f~~A 383 (567)
..+..-++|+|+||+|||+||..++...... +.++++++.+.-... .+|. ....+...++..
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l 147 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELL 147 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHH
Confidence 3556779999999999999999998776322 345666665432111 1111 112222233333
Q ss_pred hcCCCCcEEEEcCcchhhh
Q 047219 384 NELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 384 ~~~a~~~ILfIDEID~L~~ 402 (567)
.......+|+||.+..+..
T Consensus 148 ~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 148 VRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HTTTCCSEEEEECTTTCCC
T ss_pred HhcCCCCEEEEeChHHhcc
Confidence 3333358999999999874
No 122
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.39 E-value=0.00051 Score=66.30 Aligned_cols=28 Identities=21% Similarity=0.133 Sum_probs=24.3
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....-++|+||||+|||++++.++...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 4566779999999999999999999863
No 123
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.39 E-value=0.00013 Score=78.46 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.3
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
..++|.|+||||||+++.+++..+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999999988743
No 124
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.35 E-value=0.0002 Score=74.67 Aligned_cols=80 Identities=26% Similarity=0.260 Sum_probs=48.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh----hhhc------------hhHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS----KYYG------------ESERLLGKVFSL 382 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s----~~~G------------~~~~~l~~~f~~ 382 (567)
..+..-++|+||||+|||+|+..++..+... +..+++++.+.... +-+| ..+..+..+...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l 134 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDEL 134 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHH
Confidence 4556779999999999999999999876322 34566666543211 1111 112222222222
Q ss_pred HhcCCCCcEEEEcCcchhhh
Q 047219 383 ANELPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 383 A~~~a~~~ILfIDEID~L~~ 402 (567)
.... ...+++||.+..+.+
T Consensus 135 ~~~~-~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 135 VRSG-VVDLIVVDSVAALVP 153 (356)
T ss_dssp HHTS-CCSEEEEECTTTCCC
T ss_pred hhhc-CCCeEEehHhhhhcC
Confidence 2223 358999999998865
No 125
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.30 E-value=0.0034 Score=74.61 Aligned_cols=182 Identities=14% Similarity=0.099 Sum_probs=99.7
Q ss_pred CcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHhC--CCCCC-Cc
Q 047219 278 SWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQAG--AMPWQ-GV 354 (567)
Q Consensus 278 ~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l~--~~~~~-~~ 354 (567)
....++|.++.+++|.+.+... ....+-+.|+|+.|+|||+||+.+++... ...|. ++
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~-------------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~ 182 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKL-------------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGV 182 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTT-------------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCE
T ss_pred CCceeccHHHHHHHHHHHHhhc-------------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeE
Confidence 4467899999999999877421 23456788999999999999999886531 11111 22
Q ss_pred CeEEechh---hHH-------hhhhc---------hhHHHHHHHHHH-HhcCCCCcEEEEcCcchhhhhhhhhhHHHHHH
Q 047219 355 PLMYVPLE---VVM-------SKYYG---------ESERLLGKVFSL-ANELPNGAIIFLDEVDSFAVARDSEMHEATRR 414 (567)
Q Consensus 355 ~~~~i~~~---~l~-------s~~~G---------~~~~~l~~~f~~-A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~ 414 (567)
-++.+... .+. ..+.. .....+...+.. .....+..+|+||+++...
T Consensus 183 ~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------- 249 (1249)
T 3sfz_A 183 HWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------- 249 (1249)
T ss_dssp EEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------
T ss_pred EEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------
Confidence 23333221 011 00000 011112222221 1112235899999998641
Q ss_pred HHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhccceEEEecC-CCHHHHHHHHHHHHHhhC---HHHHHHHHHhcc
Q 047219 415 ILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSMITFGL-PDHENRQEIAAQYAKHLT---KAELAELATATE 490 (567)
Q Consensus 415 vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sRf~~~I~i~~-P~~~eR~eIL~~~~~~~~---~~~l~~la~~t~ 490 (567)
.+ ..+ .....||.||....... .+ ......+.++. ++.++-.+++...+.... .+...++++.+.
T Consensus 250 ---~~----~~~--~~~~~ilvTtR~~~~~~-~~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~ 318 (1249)
T 3sfz_A 250 ---VL----KAF--DNQCQILLTTRDKSVTD-SV-MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECK 318 (1249)
T ss_dssp ---HH----TTT--CSSCEEEEEESSTTTTT-TC-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTT
T ss_pred ---HH----Hhh--cCCCEEEEEcCCHHHHH-hh-cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhC
Confidence 11 111 23457777886443221 11 11224677775 788888888887664322 235667777776
Q ss_pred CCCHHHHHHHHHH
Q 047219 491 EMSGRDIRDVCQQ 503 (567)
Q Consensus 491 g~s~~dL~~L~~~ 503 (567)
|+ |-.|+.+...
T Consensus 319 gl-PLal~~~~~~ 330 (1249)
T 3sfz_A 319 GS-PLVVSLIGAL 330 (1249)
T ss_dssp TC-HHHHHHHHHH
T ss_pred CC-HHHHHHHHHH
Confidence 64 5455544443
No 126
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=97.23 E-value=0.00018 Score=59.73 Aligned_cols=50 Identities=20% Similarity=0.268 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHHhhCH---HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q 047219 462 DHENRQEIAAQYAKHLTK---AELAELATATEEMSGRDIRDVCQQAERSWASK 511 (567)
Q Consensus 462 ~~~eR~eIL~~~~~~~~~---~~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r 511 (567)
+.++|.+||+.++++++. .+++.++..|+||||+||.++|++|.+.++++
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~ 54 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 54 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHh
Confidence 567899999999988653 37899999999999999999999999888776
No 127
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.23 E-value=0.00032 Score=64.68 Aligned_cols=38 Identities=16% Similarity=0.403 Sum_probs=30.6
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVM 365 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~ 365 (567)
+..++|.|+||+||||+++++++.+ +.+++.++...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l------~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL------PEPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS------SSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc------CCCeEEeccchHh
Confidence 3568999999999999999999998 5556766655443
No 128
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.21 E-value=0.00085 Score=65.50 Aligned_cols=165 Identities=17% Similarity=0.198 Sum_probs=88.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcC--eEEech------hhHHhhhh----------ch--hHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVP--LMYVPL------EVVMSKYY----------GE--SERLLGKVFS 381 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~--~~~i~~------~~l~s~~~----------G~--~~~~l~~~f~ 381 (567)
...+++.|+||||||+++-.+|..+... +.. ++.++. ..+....- |. .+..+..++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~---G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~ 82 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQ---GVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK 82 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHC---CCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh
Confidence 3579999999999999999999887433 333 334432 11111110 00 1122223222
Q ss_pred HHhcCCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCC------------------CCC
Q 047219 382 LANELPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNR------------------KQD 443 (567)
Q Consensus 382 ~A~~~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~------------------~~~ 443 (567)
. .+.++++||+............ ..+.+ ..++ +..+-+++|+|. .+.
T Consensus 83 ---~--~pdlvIVDElG~~~~~~~r~~~-~~qDV-~~~l--------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~ 147 (228)
T 2r8r_A 83 ---A--APSLVLVDELAHTNAPGSRHTK-RWQDI-QELL--------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRET 147 (228)
T ss_dssp ---H--CCSEEEESCTTCBCCTTCSSSB-HHHHH-HHHH--------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSC
T ss_pred ---c--CCCEEEEeCCCCCCcccchhHH-HHHHH-HHHH--------cCCCCEEEEccccccccHHHHHHHHcCCCcCCc
Confidence 1 2579999999875322111111 11111 1111 234567777773 245
Q ss_pred CChHHHhccceEEEecCCCHHHHHHHHHHHHHh--hCHH-HHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q 047219 444 LDPALISRFDSMITFGLPDHENRQEIAAQYAKH--LTKA-ELAELATATEEMSGRDIRDVCQQAERSWASK 511 (567)
Q Consensus 444 Ld~aL~sRf~~~I~i~~P~~~eR~eIL~~~~~~--~~~~-~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r 511 (567)
+++.++.+.+.+.-++.|+.+-+.. +... +..+ .-..+. .-|+...|.+|-.-|.+..+.+
T Consensus 148 vpd~~~~~a~~v~lvD~~p~~l~~r----l~~g~vy~~~~~~~a~~---~~f~~~nl~~lrelal~~~a~~ 211 (228)
T 2r8r_A 148 LPDWVLQEAFDLVLIDLPPRELLER----LRDGKVYVPEQARAAID---AFFTQTNLTALREMAMQTAAAQ 211 (228)
T ss_dssp BCHHHHHTCSEEEEBCCCHHHHHHH----HHTTCCCCTTCCHHHHH---HHCCHHHHHHHHHHHHHHHHTC
T ss_pred CccHHHhhCCeEEEecCCHHHHHHH----HHCCCccChhHHHHHHH---hhhchhhHHHHHHHHHHHHHHH
Confidence 7888888887888888887663322 2221 1111 111122 2377888887777666655544
No 129
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.18 E-value=0.0011 Score=68.54 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=31.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC---CCCcCeEEechhh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMP---WQGVPLMYVPLEV 363 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~---~~~~~~~~i~~~~ 363 (567)
..+..-++|+||||+|||++|..++....... ..+..+++++.+.
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45566789999999999999999998742210 0134566666543
No 130
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.14 E-value=0.00094 Score=63.79 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=24.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+..-+.|.||+|+|||||++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4566779999999999999999999865
No 131
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.12 E-value=0.0011 Score=64.09 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=22.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~ 344 (567)
..++.-+.|.||+|+|||||++.++.
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45667899999999999999999983
No 132
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.11 E-value=0.00089 Score=65.28 Aligned_cols=77 Identities=18% Similarity=0.156 Sum_probs=43.0
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhh-------HHhhhhchh-----HHHHHHHHHHHhcC--
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEV-------VMSKYYGES-----ERLLGKVFSLANEL-- 386 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~-------l~s~~~G~~-----~~~l~~~f~~A~~~-- 386 (567)
+..-++++|++|+||||++..++..+... +..+..+.... +.+. .|-. -.....+++.+...
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhh
Confidence 45568889999999999888887776322 22333332111 1111 1110 00112344444432
Q ss_pred -CCCcEEEEcCcchhh
Q 047219 387 -PNGAIIFLDEVDSFA 401 (567)
Q Consensus 387 -a~~~ILfIDEID~L~ 401 (567)
.+..+|+|||+..|.
T Consensus 87 ~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFD 102 (223)
T ss_dssp CTTCCEEEECSGGGSC
T ss_pred CCCCCEEEEecCccCc
Confidence 235799999999874
No 133
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.10 E-value=0.0013 Score=67.53 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=31.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCC-C--CCcCeEEechhh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMP-W--QGVPLMYVPLEV 363 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~-~--~~~~~~~i~~~~ 363 (567)
..+..-++|+||||+|||++|..++....... + .+..+++++.+.
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 45567799999999999999999998753210 0 023566666543
No 134
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.06 E-value=0.0097 Score=65.54 Aligned_cols=75 Identities=12% Similarity=0.247 Sum_probs=54.3
Q ss_pred CcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC--CCChHHHhccceEEEecCCCHHHH
Q 047219 389 GAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ--DLDPALISRFDSMITFGLPDHENR 466 (567)
Q Consensus 389 ~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~--~Ld~aL~sRf~~~I~i~~P~~~eR 466 (567)
.-+|+|||++.|...... .....+..+.+.. ....+.+|.+|.++. .++..++.-|...|.+...+..+.
T Consensus 344 ~ivvVIDE~~~L~~~~~~----~~~~~L~~Iar~G----Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Ds 415 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGK----KVEELIARIAQKA----RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDS 415 (574)
T ss_dssp EEEEEESCCTTHHHHTCH----HHHHHHHHHHHHC----TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHH
T ss_pred cEEEEEeCHHHHhhhhhH----HHHHHHHHHHHHH----hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHH
Confidence 468999999988643211 1223334444432 356789999998877 799999999989999999998888
Q ss_pred HHHHH
Q 047219 467 QEIAA 471 (567)
Q Consensus 467 ~eIL~ 471 (567)
..++.
T Consensus 416 r~ILd 420 (574)
T 2iut_A 416 RTILD 420 (574)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 77764
No 135
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.04 E-value=0.00059 Score=83.67 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh----hc-----------hhHHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY----YG-----------ESERLLGKVFSLA 383 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~----~G-----------~~~~~l~~~f~~A 383 (567)
...+..++|+||||||||+||..++...... +..+++++.+...... +| .....+..+++..
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~~---G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L 107 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDAL 107 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhC---CCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHH
Confidence 5667889999999999999999998765322 4567777765432211 11 0122334444444
Q ss_pred hcCCCCcEEEEcCcchhhhhh
Q 047219 384 NELPNGAIIFLDEVDSFAVAR 404 (567)
Q Consensus 384 ~~~a~~~ILfIDEID~L~~~~ 404 (567)
.+.....+|+||++..+....
T Consensus 108 ~~~~~~~LVVIDSLt~L~~~~ 128 (1706)
T 3cmw_A 108 ARSGAVDVIVVDSVAALTPKA 128 (1706)
T ss_dssp HHHTCCSEEEESCSTTCCCHH
T ss_pred HhccCCCEEEEcchhhhcccc
Confidence 332345899999999987653
No 136
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=96.99 E-value=0.00029 Score=57.52 Aligned_cols=50 Identities=18% Similarity=0.418 Sum_probs=43.2
Q ss_pred CHHHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q 047219 462 DHENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQAERSWASK 511 (567)
Q Consensus 462 ~~~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r 511 (567)
+.++|.+||+.++++++ ..+++.++..+.||||+||.++|++|.+.+.++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~ 54 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRE 54 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTS
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 67899999999998865 337899999999999999999999998766543
No 137
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.97 E-value=0.01 Score=64.63 Aligned_cols=75 Identities=13% Similarity=0.286 Sum_probs=51.7
Q ss_pred cEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCC--CCChHHHhccceEEEecCCCHHHHH
Q 047219 390 AIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQ--DLDPALISRFDSMITFGLPDHENRQ 467 (567)
Q Consensus 390 ~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~--~Ld~aL~sRf~~~I~i~~P~~~eR~ 467 (567)
-+|+|||...+..... ....+.+..+.+.. ....+.+|.+|.++. .++..++.-|...|.|...+..+..
T Consensus 299 ivlvIDE~~~ll~~~~----~~~~~~l~~Lar~g----Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr 370 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG----KKVEELIARLAQKA----RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSR 370 (512)
T ss_dssp EEEEEETHHHHHHHHH----HHHHHHHHHHHHHC----GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHH
T ss_pred EEEEEeCHHHHHhhhh----HHHHHHHHHHHHHh----hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHH
Confidence 4899999988754211 11223333333322 234678888888876 6889999999889999999998888
Q ss_pred HHHHH
Q 047219 468 EIAAQ 472 (567)
Q Consensus 468 eIL~~ 472 (567)
.++..
T Consensus 371 ~ilg~ 375 (512)
T 2ius_A 371 TILDQ 375 (512)
T ss_dssp HHHSS
T ss_pred HhcCC
Confidence 87753
No 138
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.93 E-value=0.00089 Score=60.90 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=21.8
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.|+|.|+||+||||+++.+++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998
No 139
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.92 E-value=0.0026 Score=58.16 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=21.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~ 344 (567)
|.-++|.|+||+||||+|+.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35689999999999999999998
No 140
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.91 E-value=0.0035 Score=60.42 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=23.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++..++|.||||+|||+++..++...
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556779999999999999988887654
No 141
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.90 E-value=0.00058 Score=63.38 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=23.5
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+..++|.|+||+||||+++.+++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999999998
No 142
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.89 E-value=0.00063 Score=64.38 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+...++|.|+||+||||+++.+++.+
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3456789999999999999999999998
No 143
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.85 E-value=0.0019 Score=58.39 Aligned_cols=22 Identities=32% Similarity=0.762 Sum_probs=20.0
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
-++|.|+||+||||+|+.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5789999999999999999 766
No 144
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.82 E-value=0.00095 Score=74.02 Aligned_cols=27 Identities=37% Similarity=0.688 Sum_probs=23.4
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
...++|.|+||||||+++.+++..+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999987643
No 145
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.81 E-value=0.0022 Score=65.39 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=24.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+..-++|+|+||+|||++|..++...
T Consensus 95 l~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 95 LESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556779999999999999999999764
No 146
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.79 E-value=0.0019 Score=68.37 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=23.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+..-++|+||||+|||+|++.++-..
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 4566779999999999999999876443
No 147
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.79 E-value=0.0043 Score=61.07 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=31.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV 364 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l 364 (567)
...+..++|.|+||+||||+++.++..+. ..++.++...+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~------~~~~~~~~D~~ 68 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ------GNIVIIDGDSF 68 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT------TCCEEECGGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC------CCcEEEecHHH
Confidence 45677899999999999999999999883 33555666554
No 148
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.78 E-value=0.0029 Score=65.63 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=25.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+..-+.|+||||+|||+|++.++...
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5567779999999999999999999886
No 149
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.76 E-value=0.0016 Score=66.81 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=44.9
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh----hhhch------------hHHHHHHHHHHH--hc
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS----KYYGE------------SERLLGKVFSLA--NE 385 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s----~~~G~------------~~~~l~~~f~~A--~~ 385 (567)
-++|+||||+|||+|+-.++...... ..+..+++++.+.-.. +-+|- .+...-.+.+.+ .+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~ 108 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIE 108 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhh
Confidence 58999999999999988777665321 0133577777653211 11111 122101222222 12
Q ss_pred CCCCcEEEEcCcchhhh
Q 047219 386 LPNGAIIFLDEVDSFAV 402 (567)
Q Consensus 386 ~a~~~ILfIDEID~L~~ 402 (567)
...+.+|+||-|..|.+
T Consensus 109 ~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 109 RGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp TTCCEEEEEECSTTCBC
T ss_pred ccCceEEEEeccccccc
Confidence 23458999999999964
No 150
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.73 E-value=0.0023 Score=64.56 Aligned_cols=42 Identities=26% Similarity=0.422 Sum_probs=32.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS 366 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s 366 (567)
...+..++|.||||+||||+++.+++.+. ..+..+++..+..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~------~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ------GNVIVIDNDTFKQ 71 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT------TCCEEECTHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC------CCeEEEechHhHH
Confidence 34567899999999999999999999873 2356677655543
No 151
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.70 E-value=0.016 Score=55.11 Aligned_cols=64 Identities=16% Similarity=0.162 Sum_probs=36.8
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHH-HHHHHHHh
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSC-ARVIANQA 346 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~L-AraIA~~l 346 (567)
+..+|+++.-.+...+.+.+. .+..+..++.-. +.. ....+.+++.+|+|+|||.. +-.+...+
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~---g~~~~~~~Q~~~--i~~---~~~~~~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGY---GFEEPSAIQQRA--IMP---IIEGHDVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHH---TCCSCCHHHHHH--HHH---HHTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccCChhhcCCCHHHHHHHHHC---CCCCCcHHHHHH--HHH---HhcCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 345799986666666655442 233444443321 111 11236799999999999987 34444444
No 152
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.69 E-value=0.0026 Score=58.09 Aligned_cols=25 Identities=36% Similarity=0.678 Sum_probs=22.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+..+.|.|++|+||||+++.++..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999988
No 153
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.66 E-value=0.0012 Score=61.40 Aligned_cols=27 Identities=30% Similarity=0.578 Sum_probs=24.4
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+.-++|.|+||+||||+++.+++.+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 346779999999999999999999988
No 154
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.65 E-value=0.0011 Score=61.86 Aligned_cols=27 Identities=44% Similarity=0.672 Sum_probs=24.0
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHH-h
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQ-A 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~-l 346 (567)
..+..++|+|+|||||||+++.+++. +
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~ 35 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELD 35 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34567999999999999999999998 5
No 155
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.64 E-value=0.0012 Score=61.17 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=23.9
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+..|+|+|+||+||||+++.+++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999998
No 156
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.62 E-value=0.0013 Score=61.24 Aligned_cols=40 Identities=30% Similarity=0.495 Sum_probs=30.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV 364 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l 364 (567)
...+..+.|.||||+||||+++.++... +...+.++...+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~------~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLP------GVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCS------SSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhcc------CCCeEEEcccch
Confidence 4566789999999999999999999874 444566665443
No 157
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.61 E-value=0.0017 Score=59.73 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=22.0
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.++|.|+||+||||+++.|++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999998
No 158
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.60 E-value=0.0029 Score=67.98 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=30.2
Q ss_pred cCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 318 ESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 318 ~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
+..++.-++|.|+||+|||+++..++...... .+.++.+++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEEC
Confidence 35667789999999999999999998876321 0334555543
No 159
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.57 E-value=0.0017 Score=60.03 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=28.4
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEV 363 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~ 363 (567)
.|+|.|+||+||||+++.+++.++.. +..+..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~---g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ---GINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT---TCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc---CceEEEEECCh
Confidence 58899999999999999999988532 34456665443
No 160
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.52 E-value=0.0019 Score=60.94 Aligned_cols=28 Identities=36% Similarity=0.538 Sum_probs=24.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+..|+|.|+||+||||+|+.+++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455679999999999999999999998
No 161
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.50 E-value=0.0016 Score=60.38 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.3
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..|+|.|+||+||||+|+.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999998
No 162
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.49 E-value=0.0024 Score=59.09 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=23.0
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.-++|.|+||+||||+++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999884
No 163
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.49 E-value=0.008 Score=64.34 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=47.6
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh----------h-----hh-----chhHHHHHHHH
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS----------K-----YY-----GESERLLGKVF 380 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s----------~-----~~-----G~~~~~l~~~f 380 (567)
+|..+++.|++|+||||++..+|..+... +..+..+.+..... . .+ ......+...+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~---G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al 175 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR---GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGV 175 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHH
Confidence 57789999999999999999999887543 33343333321100 0 01 11223344555
Q ss_pred HHHhcCCCCcEEEEcCcchhh
Q 047219 381 SLANELPNGAIIFLDEVDSFA 401 (567)
Q Consensus 381 ~~A~~~a~~~ILfIDEID~L~ 401 (567)
..+.... ..+++||....+.
T Consensus 176 ~~a~~~~-~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 176 DYFKSKG-VDIIIVDTAGRHK 195 (443)
T ss_dssp HHHHHTT-CSEEEEECCCCSS
T ss_pred HHHHhCC-CCEEEEECCCccc
Confidence 6665543 4799999987654
No 164
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.48 E-value=0.0017 Score=59.32 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=26.3
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEE
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMY 358 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~ 358 (567)
-.+++|.|+||+||||+++.+++.+ +.+++.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l------g~~~id 37 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL------KLEVLD 37 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH------TCCEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh------CCCEEE
Confidence 3579999999999999999999998 555654
No 165
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.44 E-value=0.0035 Score=64.39 Aligned_cols=34 Identities=32% Similarity=0.499 Sum_probs=27.7
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
+..++|.||+|+|||++++.+|+.+ +..++..+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l------~~~iis~Ds 38 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL------PCELISVDS 38 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS------CEEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc------CCcEEeccc
Confidence 4579999999999999999999998 444555543
No 166
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.40 E-value=0.0019 Score=59.89 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=23.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+.-|+|.|+||+||||+|+.+++.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999999988
No 167
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.39 E-value=0.0088 Score=59.52 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=24.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.....-++|+||+|+|||+|+..++..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34567799999999999999999997653
No 168
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.38 E-value=0.0031 Score=65.69 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=23.8
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.+...++|.||+|+||||+.++++..+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3445799999999999999999998763
No 169
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.36 E-value=0.0034 Score=60.81 Aligned_cols=40 Identities=13% Similarity=0.279 Sum_probs=31.3
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS 366 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s 366 (567)
...++-|+|.||||+||+|.|+.|++.+ + +..++..++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~------g--~~hIstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF------H--FNHLSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH------C--CEEECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH------C--CceEcHHHHHH
Confidence 3556788999999999999999999988 3 55566555443
No 170
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.34 E-value=0.031 Score=53.24 Aligned_cols=121 Identities=16% Similarity=0.138 Sum_probs=70.3
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEe---ch------hhHHhhhhc------------------hhHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYV---PL------EVVMSKYYG------------------ESER 374 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i---~~------~~l~s~~~G------------------~~~~ 374 (567)
...+++|+++|.||||+|-+++-..-.. +..+..+ .+ ..+...+ + +...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHH
Confidence 3568999999999999999998876333 3333333 21 1233333 1 0122
Q ss_pred HHHHHHHHHhc---CCCCcEEEEcCcchhhhhhhhhhHHHHHHHHHHHHHhhcCcccCCcEEEEEeeCCCCCCChHHHhc
Q 047219 375 LLGKVFSLANE---LPNGAIIFLDEVDSFAVARDSEMHEATRRILSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISR 451 (567)
Q Consensus 375 ~l~~~f~~A~~---~a~~~ILfIDEID~L~~~~q~~l~~~~~~vl~~LL~~ld~~~~~~~viVIaaTN~~~~Ld~aL~sR 451 (567)
.....+..+.+ .....+|+|||+.....-.-- + ...++..+.. .+...-||.|+|.. +++|...
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l---~-----~~ev~~~l~~--Rp~~~~vIlTGr~a---p~~l~e~ 170 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYL---P-----LEEVISALNA--RPGHQTVIITGRGC---HRDILDL 170 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSS---C-----HHHHHHHHHT--SCTTCEEEEECSSC---CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCC---C-----HHHHHHHHHh--CcCCCEEEEECCCC---cHHHHHh
Confidence 33444444443 234689999999653211000 0 1234444442 45667888888863 7788888
Q ss_pred cceEEEec
Q 047219 452 FDSMITFG 459 (567)
Q Consensus 452 f~~~I~i~ 459 (567)
-|.+-++.
T Consensus 171 AD~VTem~ 178 (196)
T 1g5t_A 171 ADTVSELR 178 (196)
T ss_dssp CSEEEECC
T ss_pred Ccceeeec
Confidence 77777664
No 171
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.34 E-value=0.0022 Score=61.40 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=23.8
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+..++|.|+||+||||+++.+++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999999998
No 172
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.34 E-value=0.0093 Score=58.17 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=21.1
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.++++||+|+|||.++.+++...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 49999999999999999998876
No 173
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.33 E-value=0.0029 Score=59.59 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.9
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+.-++|.|++|+||||+++.+++.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999999998
No 174
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.32 E-value=0.0022 Score=59.71 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=23.8
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+..++|.|+||+||||+++.+++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999988
No 175
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.31 E-value=0.0033 Score=58.39 Aligned_cols=43 Identities=23% Similarity=0.287 Sum_probs=31.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV 364 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l 364 (567)
...+..++|.|+||+||||+++.++..+... +..+..++...+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~---~~~~~~~~~d~~ 52 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKE---GYRVEVLDGDWA 52 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEeeHHHH
Confidence 3456779999999999999999999988432 334555554443
No 176
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.30 E-value=0.031 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=18.7
Q ss_pred CceEEeeCCCCCcHHHHH-HHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCA-RVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LA-raIA~~l 346 (567)
.+.+++.+|+|+|||..+ -.+...+
T Consensus 38 ~~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 38 GKDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCCEEEECCCCChHHHHHHHHHHHHH
Confidence 367999999999999874 3444444
No 177
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.29 E-value=0.0028 Score=59.66 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=24.7
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+..|+|.|+||+||||+++.+++.+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3455679999999999999999999987
No 178
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.28 E-value=0.0026 Score=58.78 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=23.8
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+..++|.|+||+||||+++.+++.+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999988
No 179
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.28 E-value=0.0053 Score=60.09 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=24.9
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+..++|.||||+||||+|+.+++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999988
No 180
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.27 E-value=0.0028 Score=62.64 Aligned_cols=32 Identities=34% Similarity=0.463 Sum_probs=26.3
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
.++|.||||+||||+|+.+|+.+ +..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~------~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET------GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH------CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC------CCeEEeccH
Confidence 47899999999999999999998 455555543
No 181
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.27 E-value=0.094 Score=61.69 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=35.5
Q ss_pred cCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 283 AGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 283 iG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
+|.+..+++|.+.+.. ....+-+.|+|+.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~--------------------~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLE--------------------LRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHH--------------------CCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhc--------------------cCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 8999999999887742 123567899999999999999999863
No 182
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.27 E-value=0.004 Score=61.61 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=31.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS 366 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s 366 (567)
+.-|+|.|+||+||||+|+.++..+... +..++.++...+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~---g~~~i~~~~D~~~~ 45 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKN---NIDVIVLGSDLIRE 45 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECTHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhC---CCEEEEECchHHHH
Confidence 4578999999999999999999984211 45566556655543
No 183
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.26 E-value=0.0023 Score=58.36 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=22.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++|.|+||+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999998
No 184
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.25 E-value=0.0046 Score=66.17 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=30.2
Q ss_pred cCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 318 ESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 318 ~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
|..++.-++|.|+||+|||++|..++...... .+.++.+++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEC
Confidence 35666779999999999999999998865321 0345555554
No 185
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.24 E-value=0.014 Score=55.57 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=27.7
Q ss_pred CCCceEEeeCCCCCcHH-HHHHHHHHHhCCCCCCCcCeEEec
Q 047219 320 NRPRAVLFEGPPGTGKT-SCARVIANQAGAMPWQGVPLMYVP 360 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT-~LAraIA~~l~~~~~~~~~~~~i~ 360 (567)
....-.+++||.|+||| .|.+++.+...+ +..++.+.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~----~~kvl~~k 55 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIA----QYKCLVIK 55 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT----TCCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEc
Confidence 34566889999999999 999999998644 34455554
No 186
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.24 E-value=0.0094 Score=54.93 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARV 341 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAra 341 (567)
...+.-+.|.||+|+||||++++
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 45567789999999999999993
No 187
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.23 E-value=0.0026 Score=58.81 Aligned_cols=25 Identities=44% Similarity=0.748 Sum_probs=22.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+..++|.|+||+||||+++.+++.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999988
No 188
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.23 E-value=0.0022 Score=59.08 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=19.2
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+..++|.|+||+||||+|+.+++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999999998
No 189
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.19 E-value=0.0036 Score=59.09 Aligned_cols=28 Identities=32% Similarity=0.518 Sum_probs=24.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+..+.|.||+|+||||+++.++..+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456789999999999999999999988
No 190
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.18 E-value=0.0083 Score=56.68 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=22.2
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
+.|+|.||+|+|||+|++.+.+..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4689999999999999999988753
No 191
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.16 E-value=0.0024 Score=61.18 Aligned_cols=25 Identities=24% Similarity=0.519 Sum_probs=23.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+..++|.|+||+||||+++.+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999998
No 192
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.16 E-value=0.009 Score=60.90 Aligned_cols=40 Identities=25% Similarity=0.200 Sum_probs=29.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
..++.-++|.|+||+|||+++..++...... +.++.+++.
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~sl 104 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 104 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEEC
Confidence 5667789999999999999999998765322 345555553
No 193
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.15 E-value=0.0027 Score=61.14 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.4
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+..++|.|+||+||||+++.+++.+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345679999999999999999999988
No 194
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.14 E-value=0.0029 Score=59.05 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=23.3
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+.-|+|.|+||+||||+++.+++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999998
No 195
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.13 E-value=0.0034 Score=60.79 Aligned_cols=27 Identities=30% Similarity=0.491 Sum_probs=24.3
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+..++|.|+||+||||+++.|++.+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345679999999999999999999998
No 196
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.12 E-value=0.0033 Score=57.06 Aligned_cols=23 Identities=13% Similarity=0.288 Sum_probs=21.7
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.|+|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 197
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.12 E-value=0.009 Score=57.01 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=24.5
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++.+.|.||+|+|||+|+++|.....
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567789999999999999999998764
No 198
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.11 E-value=0.0044 Score=59.33 Aligned_cols=26 Identities=27% Similarity=0.546 Sum_probs=24.0
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+..++|.|+||+||||+++.+++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999998
No 199
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.11 E-value=0.0031 Score=60.03 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.5
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.|+|.|+||+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 200
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.10 E-value=0.004 Score=57.47 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=31.1
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV 364 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l 364 (567)
..+..+.|.|++|+||||+++.++..+... +.+++.++...+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~---g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCH---GIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhC---CCcEEEECChHH
Confidence 345678999999999999999999986321 456776665433
No 201
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.08 E-value=0.0044 Score=56.84 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.5
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+..++|.|++|+||||+++.++..+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999999987
No 202
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.08 E-value=0.029 Score=56.79 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=35.9
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
.+|+++.-.+..++.+.+ .-+..+..++...- ... ......+++.+|+|+|||+.+-..+..
T Consensus 6 ~~f~~~~l~~~~~~~l~~---~g~~~~~~~Q~~~i--~~~--~~~~~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRN---KGFEKPTDIQMKVI--PLF--LNDEYNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp CCGGGSSCCHHHHHHHHH---HTCCSCCHHHHHHH--HHH--HHTCSEEEEECCSSSSHHHHHHHHHHH
T ss_pred CchhhcCCCHHHHHHHHH---cCCCCCCHHHHHHH--HHH--hCCCCCEEEECCCCChHHHHHHHHHHH
Confidence 568888666666666554 22333333333211 111 112368999999999999886654444
No 203
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.08 E-value=0.0033 Score=59.72 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=21.5
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.++|.|+||+||||+|+.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999988
No 204
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.05 E-value=0.055 Score=51.22 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=36.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+|+++.-.+...+.+.+ .-+..|..++.-.- .. ....+.+++.+|+|+|||..+-..+-..
T Consensus 13 ~~~f~~~~l~~~l~~~l~~---~g~~~~~~~Q~~~i--~~---~~~~~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 13 SSGFRDFLLKPELLRAIVD---CGFEHPSEVQHECI--PQ---AILGMDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp -CCSTTSCCCHHHHHHHHH---TTCCCCCHHHHHHH--HH---HHTTCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHH---CCCCCCCHHHHHHH--HH---HhCCCCEEEECCCCCchhhhhhHHHHHh
Confidence 3568888666666666654 22333444443211 10 1123579999999999998766555443
No 205
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.03 E-value=0.019 Score=55.41 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=33.5
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHH
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCAR 340 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAr 340 (567)
+..+|+++.=.+...+.+.+ .-+..+..++... +.. ....+.+++.+|+|+|||..+-
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~---~g~~~~~~~Q~~a--i~~---i~~~~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYA---YGFEKPSAIQQRA--IIP---CIKGYDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHH---HTCCSCCHHHHHH--HHH---HHTTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHH---CCCCCCCHHHHHH--HHH---HhCCCCEEEECCCCCcHHHHHH
Confidence 34678998655555555543 2334344444321 111 1123679999999999997643
No 206
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=96.00 E-value=0.00073 Score=55.14 Aligned_cols=48 Identities=25% Similarity=0.302 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhhC---HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Q 047219 464 ENRQEIAAQYAKHLT---KAELAELATATEEMSGRDIRDVCQQAERSWASK 511 (567)
Q Consensus 464 ~eR~eIL~~~~~~~~---~~~l~~la~~t~g~s~~dL~~L~~~a~~~a~~r 511 (567)
++|.+||+.+++.++ ..+++.++..+.||||+||.++|++|.+.+.++
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~ 51 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 51 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 468899999988754 336889999999999999999999999887765
No 207
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.00 E-value=0.041 Score=56.30 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=33.7
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHH
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVI 342 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraI 342 (567)
.+|+++.=.+...+.+.+ .-...|..++.-.- ...+ ...++++++.+|+|+|||+.+-..
T Consensus 5 ~~f~~~~l~~~l~~~l~~---~~~~~~~~~Q~~~i--~~~~-~~~~~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYA---MKFQKPSKIQERAL--PLLL-HNPPRNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CSSTTSCCCHHHHHHHHH---TTCCSCCHHHHHHH--HHHH-CSSCCCEEEECCTTSCHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHH---CCCCCCCHHHHHHH--HHHH-cCCCCeEEEECCCCCcHHHHHHHH
Confidence 457777655555555544 22333333333211 1111 234588999999999999865543
No 208
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.96 E-value=0.0065 Score=58.50 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=22.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
..++.-++|+|+||+|||++|..++..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 455667999999999999999887643
No 209
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.95 E-value=0.0054 Score=58.86 Aligned_cols=34 Identities=29% Similarity=0.653 Sum_probs=27.0
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHH
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVM 365 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~ 365 (567)
.++|.||||+||+|.|+.|++.+ + +..++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~------g--~~~istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK------G--FVHISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH------C--CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH------C--CeEEcHHHHH
Confidence 37889999999999999999998 3 4556655544
No 210
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.94 E-value=0.0033 Score=65.36 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=23.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+++|.|+||+|||++++++++.+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3569999999999999999999988
No 211
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.93 E-value=0.032 Score=60.98 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=31.9
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMS 366 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s 366 (567)
..+.-|+|.|.||+||||+|+.+++.++.. ++.+..++..++..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~---~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWI---GVPTKVFNVGEYRR 76 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCCeEEecccHHHH
Confidence 345678999999999999999999987322 44455556555443
No 212
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.93 E-value=0.038 Score=51.63 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.1
Q ss_pred CceEEeeCCCCCcHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCAR 340 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAr 340 (567)
.+++++.+|+|+|||..+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 40 GRDILARAKNGTGKSGAYL 58 (206)
T ss_dssp TCCEEEECCSSSTTHHHHH
T ss_pred CCCEEEECCCCCchHHHHH
Confidence 3689999999999997554
No 213
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.92 E-value=0.0047 Score=58.28 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++..+.|.||+|+||||++++++..+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45677899999999999999999999884
No 214
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.91 E-value=0.06 Score=54.24 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=38.2
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHH-HHHHHh
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCAR-VIANQA 346 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAr-aIA~~l 346 (567)
+..+|+++.-.+...+.|.. .-+..|..++... +...+ ..+++.+++++|+|+|||...- .+...+
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~---~g~~~pt~iQ~~a--i~~il-~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYA---MGFNRPSKIQENA--LPLML-AEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHH---TTCCSCCHHHHHH--HHHHT-SSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcCCHhhcCCCHHHHHHHHH---cCCCCCCHHHHHH--HHHHH-cCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 34678888666666666554 2334444444321 11111 2345889999999999997643 334443
No 215
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.89 E-value=0.019 Score=63.89 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=21.7
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...++++|+||||||+++.++...+
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 3679999999999999998887765
No 216
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.85 E-value=0.023 Score=54.54 Aligned_cols=64 Identities=13% Similarity=0.121 Sum_probs=34.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHH-HHHHHHh
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCA-RVIANQA 346 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LA-raIA~~l 346 (567)
+..+|+++.-.+..++.+.+ .-+..+..++.-.-. . ....+++++.+|+|+|||..+ -.+...+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~---~g~~~~~~~Q~~~i~--~---~~~~~~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRA---AGFERPSPVQLKAIP--L---GRCGLDLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHH---TTCCSCCHHHHHHHH--H---HHTTCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCCHhhcCCCHHHHHHHHH---CCCCCCCHHHHHHHH--H---HhCCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence 34578888655555555543 223334444332111 1 122467999999999999864 3333443
No 217
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.84 E-value=0.016 Score=55.41 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=32.0
Q ss_pred CCCCCcccccCcHH-HHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHH
Q 047219 274 KSEISWENIAGYDQ-QKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCAR 340 (567)
Q Consensus 274 ~~~~~~~dIiG~~~-~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAr 340 (567)
.+..+|++..+... ..+.+.+ .-+..|..++.-.- .. ....+.+++.+|+|+|||..+-
T Consensus 16 ~p~~~f~~~~~l~~~l~~~l~~---~g~~~~~~~Q~~~i--~~---~~~~~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 16 KPTCRFKDAFQQYPDLLKSIIR---VGILKPTPIQSQAW--PI---ILQGIDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCCCSHHHHHTTCHHHHHHHHH---HTCCSCCHHHHHHH--HH---HHTTCCEEEECCTTSCHHHHHH
T ss_pred CChhhHhhhhccCHHHHHHHHH---CCCCCCCHHHHHHH--HH---HhCCCCEEEECCCCChHHHHHH
Confidence 34567887544443 3333332 22334444443211 11 1134689999999999998644
No 218
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.83 E-value=0.017 Score=61.68 Aligned_cols=28 Identities=29% Similarity=0.366 Sum_probs=24.5
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
++.-+++.|++|+||||++..+|..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999988743
No 219
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.76 E-value=0.0072 Score=58.94 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.9
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+.-+.|.||+|+||||+++.|++.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999988
No 220
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.74 E-value=0.0059 Score=57.35 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=24.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
+.-|+|.|+||+||||+++.+++.++.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 456899999999999999999999854
No 221
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.67 E-value=0.0057 Score=58.26 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.6
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 222
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.67 E-value=0.0061 Score=57.69 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=24.7
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+..++|.||||+||||+++.+++.+.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4567799999999999999999999873
No 223
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.64 E-value=0.0079 Score=57.39 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=22.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+.|.||+|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999988
No 224
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.62 E-value=0.0073 Score=56.06 Aligned_cols=27 Identities=11% Similarity=0.313 Sum_probs=23.6
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.+.-+.|.||+|+|||||++.++....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346789999999999999999998763
No 225
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.62 E-value=0.038 Score=53.39 Aligned_cols=22 Identities=27% Similarity=0.441 Sum_probs=17.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIA 343 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA 343 (567)
+..+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 4689999999999998665554
No 226
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.60 E-value=0.0073 Score=56.33 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=22.0
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.+.|.|++|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999983
No 227
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.59 E-value=0.013 Score=55.07 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.6
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+.|.|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 578999999999999999999 6
No 228
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.55 E-value=0.0068 Score=56.83 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=24.1
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+.-+.|.||+|+||||+++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456678999999999999999999876
No 229
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.53 E-value=0.0079 Score=57.22 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=32.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC-CCCCCCcCeEEechhhH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG-AMPWQGVPLMYVPLEVV 364 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~-~~~~~~~~~~~i~~~~l 364 (567)
...+..++|.|++|+||||+++.++..+. .. +.+++.++...+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~---g~~~~~~~~d~~ 65 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDR---RVHAYRLDGDNI 65 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHH---CCCEEEECHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccc---CCcEEEECChHH
Confidence 45567899999999999999999999873 11 344666765544
No 230
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.52 E-value=0.062 Score=52.45 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=31.7
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHH
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCAR 340 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAr 340 (567)
..+|+++.-.+...+.+.+ .-+..+..++.-.. .. ....+.+++.+|+|+|||..+-
T Consensus 42 ~~~f~~l~l~~~l~~~l~~---~g~~~~~~~Q~~~i--~~---i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQ---LGWTKPTKIQIEAI--PL---ALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHH---TTCCSCCHHHHHHH--HH---HHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHHHcCCCHHHHHHHHH---cCCCCCCHHHHHHH--HH---HhCCCCEEEEcCCCCCchhHhH
Confidence 3568887555555544433 22333333333211 11 1123679999999999998643
No 231
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.49 E-value=0.045 Score=51.92 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.6
Q ss_pred ceEEeeCCCCCcHHHHHH
Q 047219 323 RAVLFEGPPGTGKTSCAR 340 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAr 340 (567)
+.+++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 679999999999998643
No 232
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.46 E-value=0.0091 Score=57.45 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=21.6
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.++|.|+||+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 233
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.45 E-value=0.0083 Score=56.58 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=24.2
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.+.-|+|.|+||+||||+++.+++.++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456799999999999999999999874
No 234
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.45 E-value=0.019 Score=54.38 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=30.6
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhhc
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYYG 370 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~G 370 (567)
...+.|+|++|+||||+++.+++.+ + +..+++..+....++
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l------g--~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY------G--AHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH------C--CEEEEHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc------C--CEEEECcHHHHHHHH
Confidence 3458899999999999999999987 4 444566666554443
No 235
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.44 E-value=0.073 Score=55.00 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=34.1
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHH-HHHHHh
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCAR-VIANQA 346 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAr-aIA~~l 346 (567)
.+|+++.-.+...+.+.+ .-+..+..++.-. +.. ....+.+++.+|+|+|||+.+- .+.+.+
T Consensus 40 ~~f~~~~l~~~~~~~l~~---~~~~~~~~~Q~~~--i~~---~~~~~~~lv~a~TGsGKT~~~~~~~~~~~ 102 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYA---YGFEKPSAIQQRA--ILP---CIKGYDVIAQAQSGTGKTATFAISILQQI 102 (414)
T ss_dssp CCGGGGCCCHHHHHHHHH---TTCCSCCHHHHHH--HHH---HHTTCCEEECCCSCSSSHHHHHHHHHHHC
T ss_pred cCHhhCCCCHHHHHHHHH---cCCCCCCHHHHHH--hHH---HhCCCCEEEECCCCCcccHHHHHHHHHHH
Confidence 467777655555555543 2233333333321 101 1124569999999999998743 344443
No 236
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.44 E-value=0.04 Score=51.57 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.3
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+++.+|+|+|||+++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999888777643
No 237
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.44 E-value=0.023 Score=57.86 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=25.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-++|.|++|+||||++..+|..+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 35667899999999999999999998874
No 238
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.43 E-value=0.008 Score=56.64 Aligned_cols=27 Identities=19% Similarity=0.457 Sum_probs=24.0
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.+.-|+|.|+||+||||+++.+++.++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999999874
No 239
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.41 E-value=0.016 Score=54.97 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=24.5
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+.-+.|.||+|+|||||++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4566788999999999999999999873
No 240
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.36 E-value=0.011 Score=57.75 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=23.4
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+..+.|.||+|+||||+++.|++.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35679999999999999999999998
No 241
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.33 E-value=0.021 Score=56.39 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=23.5
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+.|.|++|+||||+++.++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5679999999999999999999998
No 242
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.32 E-value=0.0093 Score=56.75 Aligned_cols=28 Identities=21% Similarity=0.489 Sum_probs=24.5
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.++.-+.|.||+|+||||+++.++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4566789999999999999999998874
No 243
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.28 E-value=0.01 Score=55.58 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=23.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+..+.|.|++|+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999987
No 244
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.27 E-value=0.075 Score=51.31 Aligned_cols=58 Identities=10% Similarity=0.010 Sum_probs=33.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHH
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCAR 340 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAr 340 (567)
+..+|+++.-.+...+.+.+ .-+..|..++.-. +.. ....+.+++.+|+|+|||..+-
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~---~g~~~~~~~Q~~~--i~~---~~~g~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIAR---QNFTEPTAIQAQG--WPV---ALSGLDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHT---TTCCSCCHHHHHH--HHH---HHHTCCEEEEECTTSCHHHHHH
T ss_pred ccCCHhhcCCCHHHHHHHHH---CCCCCCCHHHHHH--HHH---HhCCCCEEEECCCcCHHHHHHH
Confidence 45678887655555555543 2233343343321 100 1123689999999999998643
No 245
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.26 E-value=0.081 Score=54.54 Aligned_cols=66 Identities=20% Similarity=0.267 Sum_probs=38.1
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHH-HHHHHHh
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCA-RVIANQA 346 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LA-raIA~~l 346 (567)
+..+|+++.-.+...+.+.+ .-...|..++... +...+ ...+..+++.+|+|+|||..+ -.+...+
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~---~g~~~~~~~Q~~~--i~~~~-~~~~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYA---MGFNRPSKIQENA--LPLML-AEPPQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHH---TTCCSCCHHHHHH--HHHHH-SSSCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred ccCCHhhCCCCHHHHHHHHH---cCCCCCCHHHHHH--HHHHh-cCCCCeEEEECCCCchHHHHHHHHHHHHh
Confidence 34578888666666666654 2233444443321 11111 224578999999999999875 3344444
No 246
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.25 E-value=0.013 Score=54.88 Aligned_cols=23 Identities=39% Similarity=0.638 Sum_probs=21.9
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+.|.|++|+||||+++.++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999999988
No 247
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.23 E-value=0.024 Score=60.10 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+.-|+|.|+||+||||+|+.+++.+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456779999999999999999999877
No 248
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.21 E-value=0.13 Score=53.12 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=34.9
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHH
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIA 343 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA 343 (567)
..+|+++.=.+..++.+.+ .-+..|..++.-.-. . ....+.+++.+|+|+|||..+-..+
T Consensus 36 ~~~f~~~~l~~~l~~~l~~---~g~~~~~~~Q~~ai~--~---i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYA---YGFEKPSAIQQRAIK--Q---IIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHH---HTCCSCCHHHHHHHH--H---HHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHH---cCCCCCCHHHHHHHH--H---HhCCCCEEEECCCCCCchHHHHHHH
Confidence 3578887656666665543 233334444432111 0 1123679999999999997665433
No 249
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.19 E-value=0.017 Score=61.88 Aligned_cols=41 Identities=24% Similarity=0.189 Sum_probs=30.7
Q ss_pred cCCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 318 ESNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 318 ~~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
|..++.-++|.|+||+|||++|-.++...... +.++.+++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEEC
Confidence 35667779999999999999999998876322 345665554
No 250
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.19 E-value=0.13 Score=53.06 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=34.3
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHH
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~ 344 (567)
..+|+++.-.+...+.+.+ .-+..+..++.-... .. ...+.+++.+|+|+|||+.+-..+-
T Consensus 20 ~~~f~~~~l~~~l~~~l~~---~g~~~~~~~Q~~~i~--~i---~~~~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFE---AGFEKPSPIQEEAIP--VA---ITGRDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHH---TTCCSCCHHHHHHHH--HH---HHTCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHH---CCCCCCCHHHHHHHH--HH---hcCCCEEEECCCCcHHHHHHHHHHH
Confidence 3578888666666665544 223333333322110 00 1235699999999999986654443
No 251
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.18 E-value=0.07 Score=58.18 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+...++|.||+|+|||+|++.++....
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45667899999999999999999998764
No 252
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.17 E-value=0.013 Score=54.93 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=23.1
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+.-+.|.||+|+||||+++.++...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45668899999999999999999876
No 253
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.15 E-value=0.018 Score=56.38 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.2
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+..|.|.|++|+||||+|+.+++.++
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456799999999999999999999883
No 254
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.14 E-value=0.0089 Score=61.82 Aligned_cols=40 Identities=23% Similarity=0.152 Sum_probs=29.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
..+..-++|.|+||+|||++|..++...... +.++.+++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~---g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALND---DRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEeC
Confidence 5667779999999999999999998875322 445555543
No 255
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.13 E-value=0.049 Score=55.84 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=36.3
Q ss_pred CCCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHH-HHHHHh
Q 047219 274 KSEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCAR-VIANQA 346 (567)
Q Consensus 274 ~~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAr-aIA~~l 346 (567)
.+..+|+++.=.+...+.+.. ..+..+..++... +... ...+.+++.+|+|+|||..+- .+.+.+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~---~g~~~~~~~Q~~~--i~~i---~~~~~~lv~~~TGsGKT~~~~~~~~~~l 83 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFG---YGFEEPSAIQQRA--IMPI---IEGHDVLAQAQSGTGKTGTFSIAALQRI 83 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHH---HTCCSCCHHHHHH--HHHH---HHTCCEEECCCSSHHHHHHHHHHHHHHC
T ss_pred cccCChhhcCCCHHHHHHHHH---cCCCCCCHHHHHH--HHHH---hCCCCEEEECCCCChHHHHHHHHHHHHh
Confidence 344679998655555555544 2233343343321 1111 113579999999999998743 334433
No 256
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.11 E-value=0.011 Score=54.58 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=21.3
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
-+.|.|++|+||||+++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999987
No 257
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.09 E-value=0.11 Score=49.59 Aligned_cols=57 Identities=11% Similarity=0.075 Sum_probs=33.0
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHH
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCAR 340 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAr 340 (567)
..+|+++.-.+...+.+.+ .-...+..++.-.- .. ....+.+++.+|+|+|||+.+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~---~~~~~~~~~Q~~~i--~~---~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQE---AQYRLVTEIQKQTI--GL---ALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHH---TTCCBCCHHHHHHH--HH---HHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHH---CCCCCCCHHHHHHH--HH---HhCCCCEEEEeCCCCcHHHHHH
Confidence 3468888666666665543 22333333333211 00 1224679999999999998543
No 258
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.05 E-value=0.11 Score=55.40 Aligned_cols=65 Identities=18% Similarity=0.256 Sum_probs=37.4
Q ss_pred CCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHH-HHHHHHh
Q 047219 276 EISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCA-RVIANQA 346 (567)
Q Consensus 276 ~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LA-raIA~~l 346 (567)
..+|+++.-.+...+.+.+ .-+..|..++.... ...+ ...+..+++.||+|+|||..+ -.+...+
T Consensus 91 ~~~f~~~~l~~~l~~~l~~---~g~~~p~~~Q~~ai--~~il-~~~~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYA---MGFNRPSKIQENAL--PLML-AEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHH---TTCCSCCHHHHHHH--HHHT-SBSCCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred cCCHHHcCCCHHHHHHHHH---cCCCCCCHHHHHHH--HHHH-cCCCCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 3578887666666666554 23334433333211 1111 234688999999999999874 3444443
No 259
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.05 E-value=0.027 Score=53.14 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=23.8
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+.-+.|.|++|+||||+++.++..+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445678899999999999999999876
No 260
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.04 E-value=0.023 Score=56.81 Aligned_cols=25 Identities=32% Similarity=0.545 Sum_probs=22.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+.-++|.|+||+||||+|+.+++.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC
Confidence 3568999999999999999999863
No 261
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.01 E-value=0.067 Score=54.02 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.5
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+..++|.|++|+||||++..+|..+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3567899999999999999999998774
No 262
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.99 E-value=0.23 Score=50.74 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=33.9
Q ss_pred CCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHHHHHHHH
Q 047219 277 ISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 277 ~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~LAraIA~ 344 (567)
.+|+++.=.....+.|.+ .-+..+..++...-. . ....+.+++.+|+|+|||..+-..+-
T Consensus 8 ~~f~~~~l~~~l~~~l~~---~g~~~~~~~Q~~~i~--~---~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVD---CGFEHPSEVQHECIP--Q---AILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp -CGGGGCCCHHHHHHHHH---HSCCSCCHHHHHHHH--H---HTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHH---CCCCCCCHHHHHHHH--H---HhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 467787655555555544 223334334332111 1 12246799999999999987654443
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.99 E-value=0.012 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.6
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+.|.||+|+||||+++.++...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 57899999999999999999754
No 264
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.98 E-value=0.014 Score=54.99 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.0
Q ss_pred ceEEeeCCCCCcHHHHHHHHHH
Q 047219 323 RAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~ 344 (567)
..+.|.|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987
No 265
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.98 E-value=0.013 Score=54.46 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=21.3
Q ss_pred EEeeCCCCCcHHHHHHHHHHHhC
Q 047219 325 VLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~l~ 347 (567)
|.|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
No 266
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.93 E-value=0.021 Score=53.16 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=23.1
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
..+..|.|.|++|+||||+++.+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 44667999999999999999999986
No 267
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.93 E-value=0.027 Score=53.29 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=21.2
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...-.+++||.|+|||+.+-.+++.+
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 34568899999999998887777765
No 268
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.91 E-value=0.034 Score=62.21 Aligned_cols=23 Identities=39% Similarity=0.752 Sum_probs=16.8
Q ss_pred eEEeeCCCCCcHHHHHH-HHHHHh
Q 047219 324 AVLFEGPPGTGKTSCAR-VIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAr-aIA~~l 346 (567)
-.||+||||||||+++- .|+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999996544 444443
No 269
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.91 E-value=0.013 Score=60.41 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.6
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.++.++|.||+|+|||+|+..||+.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 44679999999999999999999988
No 270
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.90 E-value=0.014 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.587 Sum_probs=22.1
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+.|.||+|+||||+++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999998763
No 271
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.89 E-value=0.02 Score=56.27 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=23.5
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+..+.|.||+|+||||+++.|++.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34578899999999999999999988
No 272
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=94.83 E-value=0.056 Score=58.57 Aligned_cols=26 Identities=27% Similarity=0.448 Sum_probs=19.7
Q ss_pred CCceEEeeCCCCCcHHHHH-HHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCA-RVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LA-raIA~~l 346 (567)
..+.+++.+|+|+|||..+ ..+...+
T Consensus 157 ~~~~~ll~apTGsGKT~~~~~~il~~l 183 (508)
T 3fho_A 157 PPRNMIGQSQSGTGKTAAFALTMLSRV 183 (508)
T ss_dssp SCCCEEEECCSSTTSHHHHHHHHHHHS
T ss_pred CCCCEEEECCCCccHHHHHHHHHHHHH
Confidence 3578999999999999874 3444444
No 273
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.80 E-value=0.056 Score=58.08 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=29.5
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEV 363 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~ 363 (567)
..+..|+|.|.||+|||++++.+++.+... ..++..++...
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~---~~~t~~~~~d~ 77 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI---GVPTREFNVGQ 77 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc---CCCceEEecch
Confidence 345679999999999999999999987422 33445544433
No 274
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.79 E-value=0.021 Score=58.25 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.5
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+.-++|.||+|+|||+||..+|+.++
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 4456788999999999999999999984
No 275
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.77 E-value=0.023 Score=54.97 Aligned_cols=28 Identities=25% Similarity=0.559 Sum_probs=24.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+..+.|.|++|+||||+++.++..+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4556679999999999999999999988
No 276
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.76 E-value=0.016 Score=54.72 Aligned_cols=27 Identities=30% Similarity=0.672 Sum_probs=22.7
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
++..+.|.||+|+|||||++.+.....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 346789999999999999999998763
No 277
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.75 E-value=0.081 Score=61.56 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=22.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
...+.-+.|.||.|+||||+.|.++..
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 345567999999999999999998743
No 278
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.64 E-value=0.025 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.6
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+.-+.|.|++|+||||+++.++. +
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-l 27 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-L 27 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-T
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-c
Confidence 45789999999999999999997 5
No 279
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.64 E-value=0.015 Score=59.84 Aligned_cols=73 Identities=16% Similarity=0.218 Sum_probs=43.2
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhh-H-----Hh--hhh-chhHHHHHHHHHHHhcCCCCcE
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEV-V-----MS--KYY-GESERLLGKVFSLANELPNGAI 391 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~-l-----~s--~~~-G~~~~~l~~~f~~A~~~a~~~I 391 (567)
+...++|.||+|+||||++++++...... ...+.+.... + .. .++ | .....+..+..+.... +.+
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~~----~g~i~i~~~~e~~~~~~~~~i~~~~g-gg~~~r~~la~aL~~~-p~i 243 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPKE----ERIISIEDTEEIVFKHHKNYTQLFFG-GNITSADCLKSCLRMR-PDR 243 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCTT----SCEEEEESSCCCCCSSCSSEEEEECB-TTBCHHHHHHHHTTSC-CSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCC----CcEEEECCeeccccccchhEEEEEeC-CChhHHHHHHHHhhhC-CCE
Confidence 45689999999999999999999987432 1122222110 0 00 011 1 1122334445555544 589
Q ss_pred EEEcCcch
Q 047219 392 IFLDEVDS 399 (567)
Q Consensus 392 LfIDEID~ 399 (567)
|++||...
T Consensus 244 lildE~~~ 251 (330)
T 2pt7_A 244 IILGELRS 251 (330)
T ss_dssp EEECCCCS
T ss_pred EEEcCCCh
Confidence 99999975
No 280
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.63 E-value=0.019 Score=55.16 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=23.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++..+.|.||+|+|||||++.|+...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4566779999999999999999999976
No 281
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.59 E-value=0.024 Score=53.74 Aligned_cols=25 Identities=24% Similarity=0.554 Sum_probs=22.8
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+..+.|.|++|+|||++++.+++.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468999999999999999999988
No 282
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.59 E-value=0.019 Score=54.17 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.6
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+.-+.|.||+|+||||+++.|+..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 455678899999999999999999987
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.58 E-value=0.023 Score=52.11 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=25.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++.-+.|.||.|+|||||+++|+..++
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 45666789999999999999999999873
No 284
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.54 E-value=0.042 Score=56.27 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=24.5
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+.-+.|.||+|+||||+++.|+..+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556788999999999999999999885
No 285
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.43 E-value=0.021 Score=61.49 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.3
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+..++|+|++|+|||+|++.++...
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhh
Confidence 34568999999999999999988765
No 286
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.43 E-value=0.018 Score=54.36 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=23.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+.-+.|.|++|+||||+++.++..+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3445678899999999999999999865
No 287
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.42 E-value=0.085 Score=61.54 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.5
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHH
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~ 344 (567)
.+.-++|.||.|+||||+.|.++-
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999953
No 288
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.42 E-value=0.082 Score=56.14 Aligned_cols=28 Identities=21% Similarity=0.383 Sum_probs=24.3
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
+...++|.||+|+||||+.+++...+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 4456899999999999999999998853
No 289
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=94.41 E-value=0.12 Score=49.66 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=15.4
Q ss_pred CceEEeeCCCCCcHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCA 339 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LA 339 (567)
.+.+++.+|+|+|||..+
T Consensus 66 ~~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 66 GRELLASAPTGSGKTLAF 83 (245)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 367999999999999864
No 290
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.40 E-value=0.054 Score=54.59 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=25.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.|++|+||||+++.|+..+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34566788999999999999999999874
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.40 E-value=0.032 Score=55.33 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=23.9
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+...++|.||+|+||||++++++...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 456679999999999999999999876
No 292
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.39 E-value=0.23 Score=55.95 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.2
Q ss_pred CCCceEEeeCCCCCcHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCAR 340 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAr 340 (567)
....++++.||+|+|||+.+-
T Consensus 44 ~~~~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 44 LEGNRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp TTTCCEEEECCTTSCHHHHHH
T ss_pred cCCCcEEEEcCCCCcHHHHHH
Confidence 346889999999999999884
No 293
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.34 E-value=0.18 Score=54.42 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=30.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEech
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPL 361 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~ 361 (567)
..+..-++|.|+||+|||+++..++....... +.++.+++.
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~~vl~~s~ 279 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GKKVGLAML 279 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CCCEEEEES
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CCcEEEEec
Confidence 55667799999999999999999998774321 335565554
No 294
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.32 E-value=0.13 Score=58.82 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=19.4
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
...+++.||+|+|||+++..+...
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999977666543
No 295
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.32 E-value=0.038 Score=61.63 Aligned_cols=41 Identities=22% Similarity=0.343 Sum_probs=31.9
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV 364 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l 364 (567)
.+..|+|.|.||+||||+|+++++.+... +.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~---G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCH---GIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEEEechHHh
Confidence 46679999999999999999999987322 445777765544
No 296
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.24 E-value=0.025 Score=56.60 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.0
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+.-|.|.|++|+||||+|+.++ .+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~l 98 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NL 98 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HC
Confidence 45679999999999999999999 45
No 297
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.21 E-value=0.052 Score=60.00 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=31.8
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCC-cCeEEechhhH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQG-VPLMYVPLEVV 364 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~-~~~~~i~~~~l 364 (567)
..+..|+|.|.||+||||+|+++++.+... + .+++.++...+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~---G~~~~~~lD~D~i 436 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQ---GGRSVSLLLGDTV 436 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHH---CSSCEEEEEHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhccc---CCceEEEECcHHH
Confidence 445678999999999999999999998321 1 55677765544
No 298
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=94.20 E-value=0.028 Score=53.18 Aligned_cols=29 Identities=24% Similarity=0.510 Sum_probs=24.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||+|+||||++++|+....
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45566788999999999999999999873
No 299
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.11 E-value=0.033 Score=56.96 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.5
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
+-++|.||+|+|||+|+..+++.++
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 4678999999999999999999874
No 300
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.07 E-value=0.087 Score=56.18 Aligned_cols=28 Identities=29% Similarity=0.456 Sum_probs=24.4
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+..++|.|++|+||||++..++..+.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999998763
No 301
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.00 E-value=0.031 Score=57.70 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.9
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.-++|.||+|+|||++|+.|+..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4688999999999999999999984
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.98 E-value=0.032 Score=56.74 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=25.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+++..+.|+||+|+|||||++.|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 6777889999999999999999999987
No 303
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.89 E-value=0.0092 Score=63.89 Aligned_cols=58 Identities=21% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCcccCCcEEEEEe-eCCCCCCChHHHh--ccceEEEecCCCHH-HHHHHH
Q 047219 411 ATRRILSVLLRQIDGFEQDKKVVVIAA-TNRKQDLDPALIS--RFDSMITFGLPDHE-NRQEIA 470 (567)
Q Consensus 411 ~~~~vl~~LL~~ld~~~~~~~viVIaa-TN~~~~Ld~aL~s--Rf~~~I~i~~P~~~-eR~eIL 470 (567)
...+++++|+..||++.....+ +++ ||+++.|+++|++ |||..|++++|+.. .|.+|+
T Consensus 127 ~e~rvl~~LL~~~dg~~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 127 AEERILDALLPPAKNQWGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhcccccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 4567888999999988665554 455 9999999999998 99999999999987 677775
No 304
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.89 E-value=0.035 Score=55.52 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=25.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++.-++|.||||+|||+|++.++...
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5667789999999999999999999876
No 305
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.87 E-value=0.036 Score=53.95 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=24.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+-|.||+|+||||+++.|+..++
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45556688999999999999999999873
No 306
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.84 E-value=0.037 Score=53.44 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+.-+.|.||+|+|||||.++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4566788999999999999999998874
No 307
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.84 E-value=0.016 Score=54.69 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.7
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
-+.|.|++|+||||+++.++..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999884
No 308
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.84 E-value=0.19 Score=57.74 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.9
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
.+.-+.|.||.|+||||+.|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4456889999999999999999875
No 309
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=93.76 E-value=0.027 Score=53.82 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=23.6
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+..++|.||+|+|||++|..+++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 46789999999999999999999876
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.74 E-value=0.021 Score=54.96 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=18.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHH-HHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIA-NQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA-~~l 346 (567)
..++.-+.|.||+|+||||+++.++ ...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3456678899999999999999999 765
No 311
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.70 E-value=0.16 Score=48.86 Aligned_cols=25 Identities=12% Similarity=-0.027 Sum_probs=19.4
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..-.+++|+.|+|||+.+-.++...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3456689999999998877776655
No 312
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.65 E-value=0.044 Score=53.13 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=24.6
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
.+.-+.|.|+||+||||+++.+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4567889999999999999999999853
No 313
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.58 E-value=0.11 Score=56.93 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=34.0
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKY 368 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~ 368 (567)
.+..++|.|++|+||||+|+.+++.+... +.++..++...+....
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~---G~~~~~ld~D~ir~~l 415 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQAR---GRKVTLLDGDVVRTHL 415 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECHHHHHHHT
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhc---CCeEEEECchHhhhhh
Confidence 35678999999999999999999987432 4456777776654443
No 314
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=93.55 E-value=0.1 Score=51.99 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=19.8
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+++++.+|+|+|||..+-..+-..
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~~ 55 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILEL 55 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 3579999999999998776655544
No 315
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.53 E-value=0.046 Score=57.06 Aligned_cols=28 Identities=21% Similarity=0.472 Sum_probs=24.4
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.+...++|.||+|+||||++++++..+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4566799999999999999999998763
No 316
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.49 E-value=0.094 Score=59.08 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=17.1
Q ss_pred CceEEeeCCCCCcHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCAR 340 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAr 340 (567)
..++++.||+|+|||+.+-
T Consensus 40 ~~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5789999999999999874
No 317
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=93.41 E-value=0.18 Score=48.71 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.3
Q ss_pred ceEEeeCCCCCcHHHHHH
Q 047219 323 RAVLFEGPPGTGKTSCAR 340 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAr 340 (567)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998543
No 318
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.39 E-value=0.048 Score=57.56 Aligned_cols=26 Identities=19% Similarity=0.439 Sum_probs=23.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
+.-++|.||+|+|||+|+..++..++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 34678999999999999999999874
No 319
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.39 E-value=0.05 Score=51.64 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=25.8
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeE
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLM 357 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~ 357 (567)
.-|.|.|++|||||++++.+|+.+ +++|+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l------g~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY------NIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT------TCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh------CcCEE
Confidence 468899999999999999999999 66666
No 320
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.28 E-value=0.056 Score=54.82 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||+|+||||+++.++..+.
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45677899999999999999999999873
No 321
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.24 E-value=0.085 Score=48.38 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=23.2
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....+++.|++|+|||+|..++....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445679999999999999999998754
No 322
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.21 E-value=0.052 Score=51.12 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=21.2
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999886
No 323
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=93.19 E-value=0.24 Score=54.38 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=20.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+++++|+|+|||..+-.++..+
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCChHHHHHHHHHHH
Confidence 4678999999999999987777665
No 324
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.18 E-value=0.059 Score=54.89 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=25.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||+|+|||||++.|+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 35566788999999999999999999874
No 325
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.06 E-value=0.061 Score=54.61 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=24.1
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.+..+.|.||+|+||||+++.++..+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 466789999999999999999998874
No 326
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.05 E-value=0.11 Score=52.52 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=24.4
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+.-+.|.||+|+||||+++.|+..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556788999999999999999999874
No 327
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=93.01 E-value=0.18 Score=49.45 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.6
Q ss_pred ceEEeeCCCCCcHHHHHH
Q 047219 323 RAVLFEGPPGTGKTSCAR 340 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAr 340 (567)
+.+++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 579999999999998654
No 328
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.00 E-value=0.063 Score=52.36 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.6
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+-|.|+||+||||+|+.|++.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 346689999999999999999988
No 329
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.94 E-value=0.69 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=17.4
Q ss_pred CceEEeeCCCCCcHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIA 343 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA 343 (567)
.+.+++.+|+|+|||+.+-..+
T Consensus 36 ~~~~lv~apTGsGKT~~~l~~~ 57 (414)
T 3oiy_A 36 GKSFTMVAPTGVGKTTFGMMTA 57 (414)
T ss_dssp TCCEECCSCSSSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHH
Confidence 4689999999999999554443
No 330
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.88 E-value=0.36 Score=49.82 Aligned_cols=56 Identities=18% Similarity=0.142 Sum_probs=32.3
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHH
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSC 338 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~L 338 (567)
+..+|+++.=.+...+.+.. .-+..|..++...-. . ....+.+++.+|+|+|||+.
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~---~~~~~~~~~Q~~~i~--~---i~~~~~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIEL---TRYTRPTPVQKHAIP--I---IKEKRDLMACAQTGSGKTAA 68 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHH---HTCCSCCHHHHHHHH--H---HHTTCCEEEECCTTSCHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHH---CCCCCCCHHHHHHHH--H---HccCCCEEEEcCCCCHHHHH
Confidence 34568888555555555543 233344444432111 0 12346899999999999974
No 331
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.88 E-value=0.33 Score=51.33 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=17.6
Q ss_pred CceEEeeCCCCCcHHHHH-HHHH
Q 047219 322 PRAVLFEGPPGTGKTSCA-RVIA 343 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LA-raIA 343 (567)
.+.+|+.||+|+|||+.+ -++.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999875 4444
No 332
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=92.84 E-value=0.73 Score=49.96 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=16.4
Q ss_pred CCceEEeeCCCCCcHHHHH
Q 047219 321 RPRAVLFEGPPGTGKTSCA 339 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LA 339 (567)
..+.+++.+|+|+|||+.+
T Consensus 110 ~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCccHHH
Confidence 4678999999999999853
No 333
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.84 E-value=0.044 Score=53.37 Aligned_cols=28 Identities=25% Similarity=0.404 Sum_probs=24.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++.-+.|.||+|+|||||.+.|+...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5667789999999999999999999765
No 334
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.78 E-value=0.051 Score=54.70 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=25.4
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV 364 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l 364 (567)
+.-|.|.|++|+||||+|+.+++.++.. +..+..++...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~---~~~~~vI~~D~~ 44 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRRE---GVKAVSIEGDAF 44 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhc---CCCeeEeecchh
Confidence 3468899999999999999999977311 233455554443
No 335
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=92.72 E-value=0.085 Score=50.61 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=24.7
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAM 349 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~ 349 (567)
.+.-|.|.|++|+||||+++.+++.+...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35568899999999999999999988544
No 336
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.70 E-value=0.047 Score=53.23 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=25.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++.-+.|.||+|+|||||++.|+...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5667789999999999999999999875
No 337
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.68 E-value=0.059 Score=50.36 Aligned_cols=25 Identities=20% Similarity=0.363 Sum_probs=22.7
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
...++||.|++|+|||++|.++...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4679999999999999999999874
No 338
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.65 E-value=0.32 Score=54.85 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=18.3
Q ss_pred CceEEeeCCCCCcHHHHH-HHHH
Q 047219 322 PRAVLFEGPPGTGKTSCA-RVIA 343 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LA-raIA 343 (567)
..++++.||+|+|||+.+ -++.
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il 61 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMV 61 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHHHHH
Confidence 678999999999999987 3443
No 339
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.62 E-value=0.28 Score=57.84 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.3
Q ss_pred CceEEeeCCCCCcHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~ 344 (567)
+..++|.||.|+||||+.|.++-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 46789999999999999999943
No 340
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.61 E-value=0.078 Score=49.18 Aligned_cols=26 Identities=19% Similarity=0.031 Sum_probs=22.8
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..-+.|.|++|+||||++..++..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 34688999999999999999998874
No 341
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.61 E-value=0.076 Score=55.22 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=25.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++.-+.|.||+|+||||+++.|+..+.
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 45677899999999999999999999873
No 342
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.51 E-value=0.041 Score=53.16 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=24.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++.-+.|.||+|+|||||.++|+...
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778899999999999999999765
No 343
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=92.47 E-value=0.082 Score=54.27 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++.-+.|.||+|+||||+++.++..+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35677899999999999999999998874
No 344
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=92.39 E-value=0.074 Score=48.74 Aligned_cols=24 Identities=25% Similarity=0.345 Sum_probs=21.8
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 324 AVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
-.+|+||.|+|||+++++|+-.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 678999999999999999998874
No 345
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.37 E-value=0.072 Score=51.51 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=23.4
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
+.-+.|.|++|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 45688999999999999999999984
No 346
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.33 E-value=0.056 Score=52.84 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=25.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++..+.|.||+|+|||||.+.|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5677789999999999999999999865
No 347
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.31 E-value=0.057 Score=53.50 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=25.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||+|+|||||.++|+....
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56677789999999999999999998763
No 348
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.23 E-value=0.068 Score=52.32 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=23.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
... .-+.|.||+|+|||||.++|+...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 456 778899999999999999999875
No 349
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.21 E-value=0.2 Score=60.71 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=26.5
Q ss_pred cCCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 318 ESNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 318 ~~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+++..+.|.||+|+||||+++.|...+.
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 357778899999999999999999998774
No 350
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.20 E-value=0.071 Score=52.98 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=24.3
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
..++.-+.|.||+|+|||||++.|+..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 566778999999999999999999986
No 351
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=92.15 E-value=0.32 Score=58.13 Aligned_cols=24 Identities=33% Similarity=0.219 Sum_probs=19.3
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIA 343 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA 343 (567)
..|..+|++||+|+|||.++-..+
T Consensus 622 g~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 622 PLAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp SSCCEEEEECCCCTTTHHHHHHHH
T ss_pred CCcCcEEEECCCCCCHHHHHHHHH
Confidence 456789999999999998876443
No 352
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.15 E-value=0.46 Score=54.37 Aligned_cols=25 Identities=36% Similarity=0.597 Sum_probs=20.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIA 343 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA 343 (567)
...+.++|+.||+|+|||..+-..+
T Consensus 386 ~~~~~~~Ll~a~TGSGKTlvall~i 410 (780)
T 1gm5_A 386 SEKPMNRLLQGDVGSGKTVVAQLAI 410 (780)
T ss_dssp SSSCCCCEEECCSSSSHHHHHHHHH
T ss_pred ccCCCcEEEEcCCCCCHHHHHHHHH
Confidence 4556789999999999998775544
No 353
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.13 E-value=0.93 Score=49.60 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=16.3
Q ss_pred CCceEEeeCCCCCcHHHHH
Q 047219 321 RPRAVLFEGPPGTGKTSCA 339 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LA 339 (567)
..+.+++.+|+|+|||..+
T Consensus 59 ~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 59 EDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEEcCCCcHHHHHH
Confidence 4678999999999999853
No 354
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.07 E-value=0.093 Score=50.68 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=19.9
Q ss_pred CCceEEeeCCCCCcHHH-HHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTS-CARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~-LAraIA~~l 346 (567)
.+.-.+++||-|+|||+ |.+.+.+..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~ 53 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGI 53 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34557889999999999 667766554
No 355
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.05 E-value=0.64 Score=44.26 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=24.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+..-++|+|.||+||+++|+.+.+.+
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHc
Confidence 4577789999999999999999998866
No 356
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=91.99 E-value=0.11 Score=56.42 Aligned_cols=28 Identities=0% Similarity=-0.028 Sum_probs=24.9
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
.+..++|.|.+|+||||+++++++.+..
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4467999999999999999999999953
No 357
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.99 E-value=0.058 Score=53.25 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=24.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||+|+|||||.++|+....
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667788999999999999999998763
No 358
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.94 E-value=0.067 Score=52.57 Aligned_cols=27 Identities=22% Similarity=0.508 Sum_probs=24.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
..++.-+.|.||+|+|||||++.|+..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456677899999999999999999985
No 359
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.94 E-value=0.056 Score=52.01 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=24.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+.-+.|.||+|+|||||.++++...
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778899999999999999999865
No 360
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.94 E-value=0.066 Score=52.97 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=24.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++..+.|.||+|+|||||++.|+...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5677789999999999999999999765
No 361
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=91.92 E-value=0.1 Score=49.24 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
....++|.|.+|+|||+++..++..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 346789999999999999999998863
No 362
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.91 E-value=0.068 Score=53.07 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=25.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||+|+|||||++.|+....
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 56677889999999999999999998763
No 363
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.91 E-value=0.062 Score=59.12 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=30.7
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVV 364 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l 364 (567)
..+..+.|.|++|+||||++++|+..+.... +..+..++...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~--G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMG--GRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTC--SSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccC--CceEEEECCcHH
Confidence 4567799999999999999999999884210 123444555544
No 364
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.90 E-value=0.07 Score=55.49 Aligned_cols=28 Identities=25% Similarity=0.376 Sum_probs=24.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....-+.|.||+|||||||.++|+...
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 4566778899999999999999999865
No 365
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.85 E-value=0.068 Score=53.24 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++.-+.|.||+|+|||||++.|+....
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56677899999999999999999998763
No 366
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=91.85 E-value=0.11 Score=50.18 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=26.2
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEE
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMY 358 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~ 358 (567)
..-|.|.|++|||||++++.+|+.+ +++|+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l------g~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL------GIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH------TCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc------CCcEEc
Confidence 4568899999999999999999999 655543
No 367
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.83 E-value=0.11 Score=56.35 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=25.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.|++|+||||+++.|+..+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 45677899999999999999999998773
No 368
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.81 E-value=0.11 Score=48.19 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.7
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..-+.|.|++|+||||+++.+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 45688999999999999999998763
No 369
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.77 E-value=0.062 Score=52.06 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=25.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++.-+.|.||+|+|||||.+.|+....
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 45677889999999999999999998763
No 370
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.76 E-value=0.92 Score=47.73 Aligned_cols=56 Identities=13% Similarity=0.124 Sum_probs=32.9
Q ss_pred CCCCcccccCcHHHHHHHHHHHHHhccChhhHHhhhhcccccccCCCCceEEeeCCCCCcHHHH
Q 047219 275 SEISWENIAGYDQQKREIEDTILLSLQSPEVYDDIARGTRCKFESNRPRAVLFEGPPGTGKTSC 338 (567)
Q Consensus 275 ~~~~~~dIiG~~~~k~~L~e~i~~~l~~pelf~~l~~~~~~~~~~~~p~~VLL~GppGTGKT~L 338 (567)
+-.+|+++.-.+...+.|.+ .-+..|..++...-.. ....+.+++.+|+|+|||+.
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~---~g~~~pt~iQ~~ai~~-----i~~g~d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNK---SGYKIPTPIQKCSIPV-----ISSGRDLMACAQTGSGKTAA 109 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHH---TTCCSCCHHHHHHHHH-----HHTTCCEEEECCTTSSHHHH
T ss_pred CcCChhhcCCCHHHHHHHHH---cCCCCCCHHHHHHHHH-----HhcCCCEEEECCCCCCchHH
Confidence 44578887555555554433 2344444444322111 12347899999999999984
No 371
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.73 E-value=0.062 Score=52.78 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=25.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++.-+.|.||+|+|||||++.|+....
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45667789999999999999999998763
No 372
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.72 E-value=0.062 Score=52.45 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=24.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+.-+.|.||+|+|||||.+.|+...
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566778899999999999999999875
No 373
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.69 E-value=0.075 Score=52.54 Aligned_cols=29 Identities=28% Similarity=0.403 Sum_probs=25.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++.-+.|.||+|+|||||.++|+....
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56677899999999999999999998753
No 374
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.65 E-value=0.086 Score=54.90 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||+|+|||||.++|+....
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 45667788999999999999999998753
No 375
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.65 E-value=0.11 Score=52.98 Aligned_cols=29 Identities=34% Similarity=0.433 Sum_probs=25.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++..++|.|++|+||||++..+|..+.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45677899999999999999999998874
No 376
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.61 E-value=0.087 Score=55.22 Aligned_cols=29 Identities=34% Similarity=0.550 Sum_probs=25.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||+|||||||.++|+....
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 45667788999999999999999998763
No 377
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.61 E-value=0.076 Score=52.71 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=25.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++.-+.|.||+|+|||||.+.|+....
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56677889999999999999999998653
No 378
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.61 E-value=0.086 Score=54.82 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=24.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+.-+.|.||+|+|||||.++|+...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 4566778899999999999999999865
No 379
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.53 E-value=0.09 Score=54.96 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=25.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||+|+|||||.++|+....
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 55667788999999999999999998753
No 380
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.53 E-value=0.068 Score=52.62 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.5
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++..+.|.||+|+|||||.+.|+...
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4566778999999999999999999765
No 381
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.51 E-value=0.068 Score=53.47 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=24.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++.-+.|.||+|+|||||+++|+....
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 45667789999999999999999998663
No 382
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.43 E-value=0.07 Score=53.02 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=24.7
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++.-+.|.||+|+|||||+++|+...
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4567778999999999999999999865
No 383
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.43 E-value=0.075 Score=55.02 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=25.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||+|+|||||.+.|+....
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 55667788999999999999999998653
No 384
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.40 E-value=0.082 Score=50.54 Aligned_cols=24 Identities=42% Similarity=0.398 Sum_probs=21.4
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
+.-+.|.||+|+|||||+++++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999976
No 385
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.36 E-value=0.081 Score=54.93 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=24.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.....-+.|.||+|+|||||.++|+....
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45667788999999999999999998753
No 386
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.33 E-value=0.11 Score=58.00 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=20.0
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..++++||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999888777665
No 387
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.31 E-value=0.13 Score=48.30 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=23.6
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....++|.|++|+|||+|+.++....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445679999999999999999999865
No 388
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.31 E-value=0.073 Score=53.31 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=25.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||+|+|||||.+.|+....
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45667789999999999999999998763
No 389
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.30 E-value=0.053 Score=53.25 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=23.9
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+.-|.|.|++|+||||+++.|++.+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4456789999999999999999999873
No 390
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.26 E-value=0.2 Score=47.22 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=23.3
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
....++|.|.+|+|||+|+..++....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456788899999999999999998863
No 391
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.25 E-value=0.55 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=18.5
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHH
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~ 345 (567)
..+++.+|+|+|||..+-..+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~ 45 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEH 45 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCChHHHHHHHHHHH
Confidence 57999999999999886655533
No 392
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.16 E-value=0.11 Score=48.19 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+.|.|++|+|||+|.+.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999999864
No 393
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.14 E-value=0.077 Score=52.30 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=25.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++.-+.|.||+|+|||||.+.|+....
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45667788999999999999999998763
No 394
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=91.09 E-value=0.55 Score=49.88 Aligned_cols=16 Identities=38% Similarity=0.661 Sum_probs=13.9
Q ss_pred CceEEeeCCCCCcHHH
Q 047219 322 PRAVLFEGPPGTGKTS 337 (567)
Q Consensus 322 p~~VLL~GppGTGKT~ 337 (567)
...+++.+|+|+|||+
T Consensus 19 ~~~~lv~a~TGsGKT~ 34 (451)
T 2jlq_A 19 KRLTIMDLHPGAGKTK 34 (451)
T ss_dssp TCEEEECCCTTSSCCT
T ss_pred CCeEEEECCCCCCHhh
Confidence 4556999999999998
No 395
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.09 E-value=0.12 Score=45.86 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+++.|++|+|||+|++.+....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4578999999999999999998754
No 396
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.05 E-value=0.13 Score=45.28 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.5
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+++.|++|+|||+|++.+....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 397
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.03 E-value=0.11 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=21.5
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+.|.|++|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 458899999999999999999865
No 398
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.02 E-value=0.091 Score=54.89 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=24.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||+|+|||||.++|+....
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 45667788999999999999999998753
No 399
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.97 E-value=0.087 Score=54.68 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=25.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+...++|.||+|+||||++++++....
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34567899999999999999999998874
No 400
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.96 E-value=0.11 Score=51.59 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=21.2
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999876
No 401
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.95 E-value=0.078 Score=49.13 Aligned_cols=25 Identities=16% Similarity=0.143 Sum_probs=22.3
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+.|.|++|+|||||++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999874
No 402
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.90 E-value=0.12 Score=53.33 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=23.6
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.|.||+|+|||||++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56789999999999999999999874
No 403
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=90.85 E-value=0.27 Score=58.45 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=18.5
Q ss_pred CceEEeeCCCCCcHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~ 344 (567)
...+|++||+|+|||+.+-..+.
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHH
Confidence 46899999999999988754443
No 404
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.84 E-value=0.086 Score=57.44 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=24.1
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.+..++|.||+|+||||+++++...+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 456799999999999999999998874
No 405
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.80 E-value=0.59 Score=45.51 Aligned_cols=27 Identities=22% Similarity=0.214 Sum_probs=18.9
Q ss_pred CCceEEeeCCCCCcHHHHH-HHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCA-RVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LA-raIA~~l~ 347 (567)
...-.+++|+.|+|||+.+ +.+.+...
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~ 45 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI 45 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3456778999999999655 55555543
No 406
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.80 E-value=0.28 Score=50.54 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=23.7
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....|.|.|+||+|||+++..++..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999999876
No 407
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=90.76 E-value=0.45 Score=50.38 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.1
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+++.+|+|+|||..+-.++...
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 359999999999999998888776
No 408
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.68 E-value=0.24 Score=52.83 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=20.5
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~ 344 (567)
...+-.++.|+||||||++...+++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3455678999999999999988764
No 409
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.64 E-value=0.079 Score=54.97 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=24.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+.-+.|.||+|+|||||.++|+...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 5566778899999999999999999865
No 410
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.61 E-value=0.11 Score=54.58 Aligned_cols=28 Identities=18% Similarity=0.203 Sum_probs=24.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....-+.|.||+|||||||.++|+...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 5667789999999999999999999754
No 411
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.50 E-value=0.14 Score=49.63 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=20.4
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.+.-|.|.|++|+||||+++.+++.+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345688899999999999999999884
No 412
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.45 E-value=0.18 Score=48.84 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=24.8
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
..+.-+.|.|++|+||||+++.+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 44667888999999999999999998743
No 413
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.41 E-value=0.11 Score=51.51 Aligned_cols=27 Identities=37% Similarity=0.564 Sum_probs=23.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.. +..+.|.||+|+|||||.+.|+...
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 55 6778999999999999999999865
No 414
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=90.38 E-value=0.76 Score=47.64 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=19.9
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
++++.+|+|+|||..+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 89999999999999888776554
No 415
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.35 E-value=0.16 Score=44.64 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.0
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..|++.|++|+|||+|..++....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999988653
No 416
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.34 E-value=0.11 Score=52.43 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=25.4
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...+.-+.|.||.|+|||||.+.|+....
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 56777899999999999999999998763
No 417
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.20 E-value=0.17 Score=44.55 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=21.7
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|++.|++|+|||+|.+.+...-
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3579999999999999999998753
No 418
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.19 E-value=0.13 Score=47.18 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=19.4
Q ss_pred eEEeeCCCCCcHHHHHHHHHH
Q 047219 324 AVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~ 344 (567)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999986
No 419
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.17 E-value=0.17 Score=49.38 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=24.5
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhCCC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAGAM 349 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~~~ 349 (567)
.+.-+.|.|++|+||||+++.+++.+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35668899999999999999999988543
No 420
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.16 E-value=0.16 Score=45.39 Aligned_cols=24 Identities=42% Similarity=0.585 Sum_probs=20.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
...|+|.|++|+|||+|.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356999999999999999998754
No 421
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=90.15 E-value=0.57 Score=55.20 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=17.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHH
Q 047219 323 RAVLFEGPPGTGKTSCARVIA 343 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA 343 (567)
.++++.+|+|+|||.++-...
T Consensus 102 ~~vLV~apTGSGKTlva~lai 122 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAI 122 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 579999999999999875433
No 422
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.11 E-value=0.16 Score=44.61 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.1
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+++.|++|+|||+|++.+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998754
No 423
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.05 E-value=0.17 Score=44.68 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.1
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..|++.|++|+|||+|..++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998654
No 424
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.00 E-value=0.16 Score=45.62 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=20.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHH
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~ 345 (567)
..+.|.|++|+|||+|.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999864
No 425
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=89.98 E-value=0.59 Score=49.54 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=19.3
Q ss_pred CCCceEEeeCCCCCcHHHHH-HHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCA-RVIAN 344 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LA-raIA~ 344 (567)
...+.+++.||+|+|||+.+ -++.+
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~ 31 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILA 31 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999874 44443
No 426
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.96 E-value=0.19 Score=48.32 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.2
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
+.-+.|.|++|+||||+++.+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 567889999999999999999999954
No 427
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.93 E-value=0.18 Score=44.61 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=22.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|++.|++|+|||+|.+.+....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998764
No 428
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.88 E-value=0.22 Score=45.28 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=23.2
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....|++.|++|+|||+|+.++...-
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCc
Confidence 345679999999999999999998763
No 429
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.84 E-value=0.21 Score=44.71 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
.....|++.|++|+|||+|...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45667999999999999999999764
No 430
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=89.79 E-value=0.18 Score=45.30 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=22.4
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....|++.|++|+|||+|.+.+....
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 345679999999999999999988754
No 431
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.78 E-value=0.21 Score=44.33 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....|++.|++|+|||+|...+...-
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 345679999999999999999997643
No 432
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.77 E-value=0.19 Score=45.01 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.7
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|++.|++|+|||+|...+...-
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998653
No 433
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.76 E-value=0.23 Score=52.54 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.2
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
....+.|.||+|+|||||.++|+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999999854
No 434
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=89.75 E-value=0.18 Score=44.69 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=21.8
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|++.|++|+|||+|.+.+....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998653
No 435
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.68 E-value=0.11 Score=48.28 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
......+.|.|++|+|||+|.+++...
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 556677999999999999999988754
No 436
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.66 E-value=0.23 Score=51.02 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=24.3
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....-+.|.|+||+|||||.++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4556778899999999999999999765
No 437
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.62 E-value=0.11 Score=52.66 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=25.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..++..+.|.||+|+|||||++.|+..+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 57778899999999999999999998763
No 438
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.52 E-value=0.17 Score=52.64 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=24.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+.-+-|.||+|+|||||.++|+...
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 5667778999999999999999999865
No 439
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=89.48 E-value=0.15 Score=54.72 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=24.6
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+.-+.|.||+|+|||||+|.|+...
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 4566779999999999999999999865
No 440
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=89.43 E-value=0.2 Score=44.25 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=21.0
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+++.|++|+|||+|.+++....
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998743
No 441
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.42 E-value=0.2 Score=44.29 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
...|++.|++|+|||+|..++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999864
No 442
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=89.37 E-value=0.19 Score=57.69 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=20.0
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+++||||||||+++..+...+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999888777665
No 443
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.35 E-value=0.18 Score=44.68 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=20.9
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..|++.|++|+|||+|...+...-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998643
No 444
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.32 E-value=0.4 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+.|.|+||+|||||..++....
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999864
No 445
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.27 E-value=0.84 Score=54.29 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=17.2
Q ss_pred CceEEeeCCCCCcHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVI 342 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraI 342 (567)
.+.+++++|+|+|||+++-..
T Consensus 93 g~dvlv~ApTGSGKTl~~l~~ 113 (1104)
T 4ddu_A 93 GKSFTMVAPTGVGKTTFGMMT 113 (1104)
T ss_dssp TCCEEECCSTTCCHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHH
Confidence 468999999999999965444
No 446
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.27 E-value=0.21 Score=45.21 Aligned_cols=25 Identities=28% Similarity=0.235 Sum_probs=21.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|+|.|++|+|||+|++++...-
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998743
No 447
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.26 E-value=0.21 Score=44.13 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=20.2
Q ss_pred eEEeeCCCCCcHHHHHHHHHHHh
Q 047219 324 AVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~~l 346 (567)
.+++.|++|+|||+|...+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999997654
No 448
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=89.25 E-value=0.48 Score=54.10 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=21.7
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+..+.|.||.|+||||+.|.++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 4568899999999999999998753
No 449
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.22 E-value=0.2 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.5
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHH
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~ 345 (567)
..|++.|++|+|||+|.+++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 450
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.21 E-value=0.2 Score=52.75 Aligned_cols=28 Identities=32% Similarity=0.377 Sum_probs=24.8
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+..++|.||+|+|||+|++.|++..
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 5567789999999999999999999876
No 451
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=89.16 E-value=0.2 Score=44.49 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=18.9
Q ss_pred eEEeeCCCCCcHHHHHHHHHH
Q 047219 324 AVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 324 ~VLL~GppGTGKT~LAraIA~ 344 (567)
.++|.|++|+|||+|.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999863
No 452
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=89.14 E-value=1.2 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=18.6
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHH
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~ 345 (567)
+.+++.+|+|+|||..+-..+..
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~ 42 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEH 42 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHH
Confidence 57999999999999876655543
No 453
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=89.10 E-value=0.36 Score=46.26 Aligned_cols=39 Identities=26% Similarity=0.384 Sum_probs=29.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCCCCCCcCeEEechhhHHhhhh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAMPWQGVPLMYVPLEVVMSKYY 369 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~~~~~~~~~~i~~~~l~s~~~ 369 (567)
-..|-|+|..||||||+++.+++ + +++ .+++..+....+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~------g~~--vidaD~ia~~l~ 47 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-R------GAS--LVDTDLIAHRIT 47 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-T------TCE--EEEHHHHHHHHT
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-C------CCc--EEECcHHHHHHh
Confidence 34688999999999999999987 5 444 455665555444
No 454
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.07 E-value=0.2 Score=45.41 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.4
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
...+.|.|++|+|||+|.+++...
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456899999999999999999865
No 455
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.06 E-value=0.2 Score=45.50 Aligned_cols=24 Identities=17% Similarity=0.401 Sum_probs=21.1
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
...+.|.|++|+|||+|.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356999999999999999999863
No 456
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=89.04 E-value=0.26 Score=44.24 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.2
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.-.+|+||.|+|||++..||+-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999998766
No 457
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.98 E-value=0.22 Score=44.49 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=22.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|++.|++|+|||+|.+.+....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998754
No 458
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=88.98 E-value=0.22 Score=45.35 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.8
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|+|.|++|+|||+|++.+....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3569999999999999999888765
No 459
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=88.98 E-value=0.18 Score=44.65 Aligned_cols=22 Identities=41% Similarity=0.735 Sum_probs=19.3
Q ss_pred ceEEeeCCCCCcHHHHHHHHHH
Q 047219 323 RAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~ 344 (567)
-.++|.|++|+|||+|.+.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999999864
No 460
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.95 E-value=0.25 Score=47.37 Aligned_cols=28 Identities=25% Similarity=0.519 Sum_probs=23.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhCCC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAGAM 349 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~~~ 349 (567)
+.-|.|.|++|+||||.++.+++.+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3457889999999999999999988543
No 461
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.85 E-value=0.36 Score=58.53 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=25.8
Q ss_pred cCCCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 318 ESNRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 318 ~~~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+++..+-|+|++|+||||+++.+.+...
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 356677899999999999999999998764
No 462
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.84 E-value=0.23 Score=44.89 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=21.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
-.|+|.|++|+|||+|..++....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998754
No 463
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.80 E-value=0.24 Score=52.89 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=26.1
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
...+.-+.|.||+|||||||++.|+.....
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 556677899999999999999999998743
No 464
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=88.78 E-value=0.21 Score=44.83 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=21.6
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
....|++.|++|+|||+|.+.+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999999864
No 465
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.76 E-value=0.25 Score=45.17 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.3
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
.....|++.|++|+|||+|...+...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999754
No 466
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.76 E-value=0.16 Score=48.85 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=22.6
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
..+.-+.|.|+.|+||||+++.|+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 44566889999999999999999886
No 467
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=88.74 E-value=0.42 Score=46.18 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=24.0
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.....+++.|.+|+||||++..++..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3456688999999999999999998875
No 468
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.74 E-value=0.25 Score=45.83 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....|+|.|++|+|||+|..++...-
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345679999999999999999998643
No 469
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.73 E-value=0.21 Score=44.59 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.0
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..|++.|++|+|||+|...+...-
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 470
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.68 E-value=0.33 Score=50.49 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=23.7
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
...++++.|++|+|||++++.++..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999987763
No 471
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.67 E-value=0.24 Score=44.63 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=21.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|+|.|++|+|||+|++.+...-
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 4579999999999999999998753
No 472
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.64 E-value=0.24 Score=45.18 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.4
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..|++.|.+|+|||+|+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998754
No 473
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.63 E-value=0.24 Score=45.36 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.8
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|+|.|++|+|||+|.+.+...-
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3569999999999999999998754
No 474
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.62 E-value=0.22 Score=44.60 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=21.3
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
....|++.|++|+|||+|++++...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998753
No 475
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.62 E-value=0.25 Score=44.43 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.6
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|++.|++|+|||+|.+.+...-
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3569999999999999999998753
No 476
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.59 E-value=0.22 Score=44.53 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=22.0
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...+++.|++|+|||+|.+++....
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4579999999999999999998763
No 477
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.59 E-value=0.21 Score=46.77 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEeeCCCCCcHHHHHHHHHHH
Q 047219 325 VLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 325 VLL~GppGTGKT~LAraIA~~ 345 (567)
+|++|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 478
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=88.57 E-value=0.44 Score=59.18 Aligned_cols=23 Identities=39% Similarity=0.687 Sum_probs=19.3
Q ss_pred CCCceEEeeCCCCCcHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVI 342 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraI 342 (567)
....++++..|+|+|||+++...
T Consensus 940 ~~~~nvlv~APTGSGKTliaela 962 (1724)
T 4f92_B 940 NSDDNVFVGAPTGSGKTICAEFA 962 (1724)
T ss_dssp SCCSCEEEECCTTSCCHHHHHHH
T ss_pred cCCCcEEEEeCCCCCchHHHHHH
Confidence 45678999999999999988643
No 479
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.56 E-value=0.22 Score=45.43 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.3
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
....+++.|++|+|||+|++.+...-
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998753
No 480
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.54 E-value=0.29 Score=43.98 Aligned_cols=26 Identities=19% Similarity=0.121 Sum_probs=21.9
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
.....+++.|++|+|||+|.+.+...
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999864
No 481
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.49 E-value=0.26 Score=44.78 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=22.5
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....+++.|++|+|||+|.+.+...-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999987543
No 482
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.40 E-value=0.22 Score=51.42 Aligned_cols=30 Identities=23% Similarity=0.249 Sum_probs=26.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHhCC
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQAGA 348 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l~~ 348 (567)
...+.-+.|.||+|+|||||.+.|++....
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 455677899999999999999999999743
No 483
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.39 E-value=0.21 Score=54.29 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHH--HHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVI--ANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraI--A~~l 346 (567)
..++..++|.||+|+|||||++.+ +...
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456778999999999999999994 4443
No 484
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.38 E-value=0.28 Score=45.26 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=22.0
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHH
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~ 344 (567)
......|++.|++|+|||+|+..+..
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHh
Confidence 34567799999999999999999864
No 485
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.35 E-value=0.24 Score=44.65 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=21.4
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|++.|++|+|||+|.+.+....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998643
No 486
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=88.32 E-value=1.2 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=18.4
Q ss_pred CCCceEEeeCCCCCcHHHH-HHHHH
Q 047219 320 NRPRAVLFEGPPGTGKTSC-ARVIA 343 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~L-AraIA 343 (567)
.....+++.+|+|+|||+. +-.+.
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il 43 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQII 43 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHH
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999985 34433
No 487
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=88.23 E-value=0.24 Score=44.82 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.8
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|+|.|++|+|||+|++.+...-
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4579999999999999999998654
No 488
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.20 E-value=0.26 Score=44.46 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=22.2
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
+...|+|.|++|+|||+|...+....
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34578999999999999999998753
No 489
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=88.12 E-value=0.26 Score=56.59 Aligned_cols=24 Identities=42% Similarity=0.674 Sum_probs=18.7
Q ss_pred ceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 323 RAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~~l 346 (567)
..+++.||||||||+++..+...+
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999998876665443
No 490
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=88.09 E-value=0.31 Score=49.05 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=23.8
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
.+..+.+.|++|+||||++..+|..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~ 123 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYK 123 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 566788899999999999999998874
No 491
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.08 E-value=0.29 Score=43.92 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
....|+|.|++|+|||+|...+...-
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34579999999999999999998754
No 492
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=88.02 E-value=0.42 Score=56.20 Aligned_cols=22 Identities=23% Similarity=0.273 Sum_probs=17.5
Q ss_pred ceEEeeCCCCCcHHHHHHHHHH
Q 047219 323 RAVLFEGPPGTGKTSCARVIAN 344 (567)
Q Consensus 323 ~~VLL~GppGTGKT~LAraIA~ 344 (567)
..+++.+|+|+|||+++.....
T Consensus 55 ~~vlv~apTGsGKTlv~~~~i~ 76 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEYAIA 76 (997)
T ss_dssp CEEEEECCTTSCSHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHH
Confidence 6899999999999986554433
No 493
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=87.97 E-value=0.3 Score=45.07 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=22.2
Q ss_pred CCCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 319 SNRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 319 ~~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
......|+|.|++|+|||+|+..+...-
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3455789999999999999999998653
No 494
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.93 E-value=0.33 Score=44.67 Aligned_cols=27 Identities=15% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
.....|+|.|++|+|||+|++.+...-
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 345679999999999999999998753
No 495
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=87.87 E-value=0.28 Score=44.73 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=21.9
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|+|.|++|+|||+|.+++....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998754
No 496
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=87.81 E-value=0.28 Score=45.20 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=21.0
Q ss_pred CCceEEeeCCCCCcHHHHHHHHHHH
Q 047219 321 RPRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 321 ~p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
....|++.|++|+|||+|.+.+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999874
No 497
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=87.80 E-value=0.26 Score=49.72 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=23.3
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
+..+++.|++|+||||++..+|..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67788999999999999999998774
No 498
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.77 E-value=0.29 Score=44.68 Aligned_cols=25 Identities=28% Similarity=0.252 Sum_probs=21.8
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHHh
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQA 346 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~l 346 (567)
...|+|.|++|+|||+|...+...-
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998754
No 499
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.73 E-value=0.3 Score=53.05 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCCceEEeeCCCCCcHHHHHHHHHHHhC
Q 047219 320 NRPRAVLFEGPPGTGKTSCARVIANQAG 347 (567)
Q Consensus 320 ~~p~~VLL~GppGTGKT~LAraIA~~l~ 347 (567)
..+..|+|.|+||+||||++..++..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998764
No 500
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=87.71 E-value=1.2 Score=49.44 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=19.7
Q ss_pred CceEEeeCCCCCcHHHHHHHHHHH
Q 047219 322 PRAVLFEGPPGTGKTSCARVIANQ 345 (567)
Q Consensus 322 p~~VLL~GppGTGKT~LAraIA~~ 345 (567)
.+++++.+|+|+|||+.+-..+..
T Consensus 28 g~~~iv~~~TGsGKTl~~~~~i~~ 51 (696)
T 2ykg_A 28 GKNTIICAPTGCGKTFVSLLICEH 51 (696)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEcCCCchHHHHHHHHHHH
Confidence 367999999999999987766653
Done!