BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047221
(509 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 88 HSSQNLYFSNCNGSCRSQISKLGLLTSRCISSFAMVNGPYATPKQVSE----IIELLRSG 143
+S +N+ + NG LG L RC S+ VNG + +P +E +I+L++
Sbjct: 362 YSDKNM-IARLNGEL---ADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDL 417
Query: 144 DSETESKLLSMSVSLSNASVIEILRVLNS 172
+ L + + +V ++LR +N+
Sbjct: 418 PGTADHYYLIPDIQKAIIAVFDVLRAINA 446
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 88 HSSQNLYFSNCNGSCRSQISKLGLLTSRCISSFAMVNGPYATPKQVSE----IIELLRSG 143
+S +N+ + NG LG L RC S+ VNG + +P +E +I+L++
Sbjct: 362 YSDKNM-IARLNGEL---ADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDL 417
Query: 144 DSETESKLLSMSVSLSNASVIEILRVLNS 172
+ L + + +V ++LR +N+
Sbjct: 418 PGTADHYYLIPDIQKAIIAVFDVLRAINA 446
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 88 HSSQNLYFSNCNGSCRSQISKLGLLTSRCISSFAMVNGPYATPKQVSE----IIELLRSG 143
+S +N+ + NG LG L RC S+ VNG + +P +E +I+L++
Sbjct: 362 YSDKNM-IARLNGEL---ADTLGNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIKDL 417
Query: 144 DSETESKLLSMSVSLSNASVIEILRVLNS 172
+ L + + +V ++LR +N+
Sbjct: 418 PGTADHYYLIPDIQKAIIAVFDVLRAINA 446
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 276 FSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYN 335
F+V+G E K K + + + E CDF R++L+ + T T +
Sbjct: 235 FAVIGSTEELKIGNKMMRARQYPWGTVQVENEAHCDFVKLREMLIRVNMEDLREQTHTRH 294
Query: 336 YVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKF 382
Y L CK LEEM ++ PD+ + + Y + +F
Sbjct: 295 YELYRRCK----------LEEMGFKDTDPDSKPFSLQETYEAKRNEF 331
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCH 363
L+ ++ VG + +Y+YV G+ K+ D ++ L ++ R CH
Sbjct: 514 FLLPIKTVGVQGDCRSYSYVCGISSKDEPDWESLIFLARLIPRMCH 559
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,293,882
Number of Sequences: 62578
Number of extensions: 510609
Number of successful extensions: 1252
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1251
Number of HSP's gapped (non-prelim): 8
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)