BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047221
(509 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 88/179 (49%)
Query: 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLG 359
N L+ +C L+ M + G +P +TY VL V+CK+GQ A A ELL +M
Sbjct: 197 NTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE 256
Query: 360 RNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED 419
RN DA+ Y I I C+ G D AFN FN+M +G + + T+ I G+ R++D
Sbjct: 257 RNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDD 316
Query: 420 AYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
K + + S + + +S+L K A +L EMM+ G+ PN Y ++
Sbjct: 317 GAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLI 375
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 5/219 (2%)
Query: 280 GLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY 334
G +A +++K E + Y+I+I +C+ +L EM G + +TY
Sbjct: 242 GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITY 301
Query: 335 NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK 394
N ++G C G+ D +LL +M+ R P+ +T+ + I + GK A +M++
Sbjct: 302 NTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQ 361
Query: 395 RGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVM 454
RG+ P T+ + I G+ R E+A + V L K M +++L + + K N
Sbjct: 362 RGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDD 421
Query: 455 AKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCL 493
+ EM G+ N Y +++ S + +AK L
Sbjct: 422 GLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKL 460
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 88/193 (45%)
Query: 289 IKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDA 348
IK + + YN LI C + LL +M + P +T++ ++ K G+
Sbjct: 291 IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLR 350
Query: 349 DACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFI 408
+A +LL+EM+ R P+ ITY I C+ + + A + M+ +G P + T I
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILI 410
Query: 409 KGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLR 468
GY R +D + + + ++ + Y+ L ++ +AK + EM+ +R
Sbjct: 411 NGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVR 470
Query: 469 PNVSVYRRVLKHL 481
P++ Y+ +L L
Sbjct: 471 PDIVSYKILLDGL 483
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 131/332 (39%), Gaps = 64/332 (19%)
Query: 204 NCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISS--------------KALTKKG 249
N GR DD +LL D ++ N F VLI S K + ++G
Sbjct: 310 NAGRWDDGA---KLLRDMIKRKISPNVVTF---SVLIDSFVKEGKLREADQLLKEMMQRG 363
Query: 250 IWRVVEVLNQ-VGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCR 308
I N + G C + + I+M ++ + K + + +NILI C+
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLM--------ISKGCDPDIMTFNILINGYCK 415
Query: 309 RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAIT 368
+L EM G T+TYN ++ C++G+ A +L +EM+ R PD ++
Sbjct: 416 ANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVS 475
Query: 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY------- 421
Y+I + C G+ + A F ++ K ++ + + I G + +DA+
Sbjct: 476 YKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLP 535
Query: 422 -KYVVLSADKYK------------SSSNML---------------YSLLASLHDKNNNPV 453
K V L A Y S +++L Y++L H +++
Sbjct: 536 LKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDAT 595
Query: 454 MAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSH 485
A ++ EM +G +VS + V+ L +
Sbjct: 596 TAAELIEEMKSSGFPADVSTVKMVINMLSSGE 627
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 74/176 (42%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y ++ MC+ +LL +M + + + Y+ ++ LCK+G +A L EM
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME 290
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ D ITY I C G++D M+KR + P + T + I + +
Sbjct: 291 IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLR 350
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+A + + + + + + Y+ L K N A ++ M+ G P++ +
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTF 406
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 22/180 (12%)
Query: 215 RQLLNDFNVYQVCLN--------EKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLV 266
R++ D Y++ L+ EKA + SK GI+ ++ + G C
Sbjct: 467 RRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMII-----IHGMCNA 521
Query: 267 SGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVG 326
S V ++F L L K + YNI+I E+CR+ L +M + G
Sbjct: 522 SKVDDAWDLFCSLPL--------KGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEG 573
Query: 327 CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF 386
P LTYN ++ + A EL+EEM D T ++ ++ G+ D +F
Sbjct: 574 HAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKM-VINMLSSGELDKSF 632
Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 6/177 (3%)
Query: 317 DLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS 376
DL +M Q P + +N + + K Q L ++M + T I I
Sbjct: 74 DLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCF 133
Query: 377 CRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSAD-KYKSSS 435
CR K AF+ +++K G +P + G + R +A + V + +K +
Sbjct: 134 CRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTL 193
Query: 436 NMLYSLLAS--LHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMA 490
L +L+ L+ K ++ V+ ++ M++ G +PN Y VL + S Q +A
Sbjct: 194 ITLNTLVNGLCLNGKVSDAVV---LIDRMVETGFQPNEVTYGPVLNVMCKSGQTALA 247
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 93.6 bits (231), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 87/195 (44%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V +NILI +CR+ D+L +M Q GC+P +L+YN +L CK + A E LE
Sbjct: 344 VVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLE 403
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
M+ R C+PD +TY + C+ GK + A NQ+ +G P L T+ I G
Sbjct: 404 RMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAG 463
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ A K + K + YS L + A E + G+RPN +
Sbjct: 464 KTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFN 523
Query: 476 RVLKHLHTSHQEHMA 490
++ L S Q A
Sbjct: 524 SIMLGLCKSRQTDRA 538
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 88/183 (48%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V YN +++ +C K ++L M Q C P +TY ++ C++ A +LL+
Sbjct: 204 VVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLD 263
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
EM R C PD +TY + + C+ G+ D A F N M G QP + TH ++
Sbjct: 264 EMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTG 323
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
R+ DA K + K S S + +++L + + A ++L +M ++G +PN Y
Sbjct: 324 RWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYN 383
Query: 476 RVL 478
+L
Sbjct: 384 PLL 386
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 81/169 (47%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN ++ +C+ + ++L ++ GC P+ +TYN V+ L K G+ A +LL+EM
Sbjct: 417 YNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMR 476
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
++ PD ITY + R GK D A FF++ + G++P T + + G + +
Sbjct: 477 AKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTD 536
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGL 467
A ++V ++ + Y++L A +L+E+ GL
Sbjct: 537 RAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGL 585
Score = 75.5 bits (184), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 12/226 (5%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V YN+L+ +C+ L +M GC+P +T+N +L +C G+ DA +LL
Sbjct: 274 VVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLA 333
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+ML + P +T+ I I + CR G A + +M + G QP ++ + G+
Sbjct: 334 DMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEK 393
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ + A +Y+ + + Y+ + + K+ A +L+++ G P + Y
Sbjct: 394 KMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYN 453
Query: 476 RVLKHLHTSHQ---------EHMAKCL---SSRYSSLSLGSSVEAR 509
V+ L + + E AK L + YSSL G S E +
Sbjct: 454 TVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 86/212 (40%), Gaps = 32/212 (15%)
Query: 302 LIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLG---------------------- 339
LI+ CR + +L + G P +TYN ++
Sbjct: 143 LIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSP 202
Query: 340 ----------VLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFF 389
LC +G+ A E+L+ ML R+C+PD ITY I I +CR A
Sbjct: 203 DVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLL 262
Query: 390 NQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKN 449
++M RG P + T+ + G R ++A K++ + + ++++
Sbjct: 263 DEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCST 322
Query: 450 NNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
+ A+ +L++M++ G P+V + ++ L
Sbjct: 323 GRWMDAEKLLADMLRKGFSPSVVTFNILINFL 354
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNC 362
+++M R + + L M G P + ++ C+ G+ A ++LE + G
Sbjct: 109 LRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGA 168
Query: 363 HPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYK 422
PD ITY + I C+ G+ + A + ++M + P + T+ ++ + + A +
Sbjct: 169 VPDVITYNVMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAME 225
Query: 423 YV--VLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+ +L D Y + Y++L +++ A +L EM G P+V Y
Sbjct: 226 VLDRMLQRDCYPDV--ITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTY 277
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 9/166 (5%)
Query: 244 ALTKKG-IWRVVEVLNQV---GGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERK---- 295
AL K G + VE+LNQ+ G S ++ +I+ + G A ++ + K
Sbjct: 423 ALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKP 482
Query: 296 -VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELL 354
Y+ L+ + R E ++G P +T+N ++ LCK+ Q A + L
Sbjct: 483 DTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFL 542
Query: 355 EEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR 400
M+ R C P+ +Y I I G A N++ +GL +
Sbjct: 543 VFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKK 588
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 90/183 (49%), Gaps = 4/183 (2%)
Query: 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377
L+ +M + GC+P +TY VL V+CK+GQ A A ELL +M RN DA+ Y I I C
Sbjct: 215 LIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274
Query: 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437
+ G D AFN FN+M +G+ + T+ I G+ R++D K + + + + +
Sbjct: 275 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVV 334
Query: 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL----KHLHTSHQEHMAKCL 493
+S+L K A+ + EM+ G+ P+ Y ++ K H M +
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 394
Query: 494 SSR 496
S+
Sbjct: 395 VSK 397
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 280 GLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY 334
G +A +++K E + Y+I+I +C+ +L EM G +TY
Sbjct: 242 GQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITY 301
Query: 335 NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK 394
N ++G C G+ D +LL +M+ R +P+ +T+ + I + GK A +M+
Sbjct: 302 NILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIH 361
Query: 395 RGLQPRLATHAAFIKGY 411
RG+ P T+ + I G+
Sbjct: 362 RGIAPDTITYTSLIDGF 378
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI C+ ++ M GC+P T+N ++ CK + D EL +M
Sbjct: 371 YTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMS 430
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
R D +TY I C +GK +VA F +MV R + P + T+ + G
Sbjct: 431 LRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 79/202 (39%)
Query: 280 GLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLG 339
GL K ++ YN LI+ C ++L EM P +TY +L
Sbjct: 422 GLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLD 481
Query: 340 VLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP 399
LC NG+ A E+ E++ D Y I I C K D A++ F + +G++P
Sbjct: 482 GLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 541
Query: 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVL 459
+ T+ I G +A + + Y++L H + + + ++
Sbjct: 542 GVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLI 601
Query: 460 SEMMKNGLRPNVSVYRRVLKHL 481
E+ + G + S + V+ L
Sbjct: 602 EELKRCGFSVDASTIKMVIDML 623
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%)
Query: 290 KKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDAD 349
+K V +++LI + + +L EM G P T+TY ++ CK
Sbjct: 327 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386
Query: 350 ACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIK 409
A ++++ M+ + C P+ T+ I I C+ + D F +M RG+ T+ I+
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446
Query: 410 GY 411
G+
Sbjct: 447 GF 448
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y ++ MC+ +LL +M + + + Y+ ++ LCK+G +A L EM
Sbjct: 231 YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEME 290
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ + ITY I I C G++D M+KR + P + T + I + +
Sbjct: 291 MKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLR 350
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+A + + + + Y+ L K N+ A ++ M+ G PN+ +
Sbjct: 351 EAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTF 406
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%)
Query: 288 VIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQD 347
V K + + +NILI C+ +L +M G T+TYN ++ C+ G+
Sbjct: 395 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 454
Query: 348 ADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAF 407
A EL +EM+ R P+ +TY+I + C G+ + A F ++ K ++ + +
Sbjct: 455 NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNII 514
Query: 408 IKGYFIFYRYEDAY 421
I G + +DA+
Sbjct: 515 IHGMCNASKVDDAW 528
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 70/174 (40%)
Query: 317 DLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS 376
DL +M P + ++ + + K Q L ++M + + T I I
Sbjct: 74 DLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCF 133
Query: 377 CRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN 436
CR K +AF+ +++K G +P T + I G + R +A + V +
Sbjct: 134 CRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDL 193
Query: 437 MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMA 490
+ + L + + A ++ +M++ G +PN Y VL + S Q +A
Sbjct: 194 ITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247
>sp|Q9M302|PP270_ARATH Pentatricopeptide repeat-containing protein At3g48810
OS=Arabidopsis thaliana GN=At3g48810 PE=2 SV=1
Length = 659
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 92/213 (43%), Gaps = 31/213 (14%)
Query: 293 ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC------------------------- 327
E V YN+L+K +C+ G + LLVEM GC
Sbjct: 178 EPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVKEGRE 237
Query: 328 -----EPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKF 382
EP+ YN ++ LCK A EL+ EM+ + P+ I+Y I C G+
Sbjct: 238 LAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQI 297
Query: 383 DVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNML-YSL 441
++AF+F QM+KRG P + T ++ +KG F+ DA + N++ Y+
Sbjct: 298 ELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGLQPNVVAYNT 357
Query: 442 LASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
L + N V A +V S M + G PN+ Y
Sbjct: 358 LVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTY 390
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 113/217 (52%), Gaps = 13/217 (5%)
Query: 279 LGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338
+GL + + + ++ E VS YN LI +C+ D+KG +L+ EM + G P ++Y+ ++
Sbjct: 229 VGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLI 288
Query: 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC--RVGKFDVAFNFFNQMVKR- 395
VLC +GQ A L +ML R CHP+ T +V C R FD A + +NQM++
Sbjct: 289 NVLCNSGQIELAFSFLTQMLKRGCHPNIYTLS-SLVKGCFLRGTTFD-ALDLWNQMIRGF 346
Query: 396 GLQPRLATHAAFIKGYFIFYRYEDAYKYVVL--SADKYKSSSNM-LYSLLASLHDKNNNP 452
GLQP + + ++G F + + K V + ++ S N+ Y L + K +
Sbjct: 347 GLQPNVVAYNTLVQG---FCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSL 403
Query: 453 VMAKNVLSEMMKNGLRPNVSVYRRVLKHL--HTSHQE 487
A + ++M+ +G PNV VY +++ L H+ +E
Sbjct: 404 DGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKE 440
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/326 (23%), Positives = 129/326 (39%), Gaps = 35/326 (10%)
Query: 175 VSALC---FLKYMREIMPEFYKNSDICSLVIDNCGRLDDY----ETMRQLLNDF---NV- 223
+S++C +K RE+ F + + +I+ + DY E MR+++ NV
Sbjct: 223 ISSMCEVGLVKEGRELAERFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVI 282
Query: 224 -YQVCLN--------EKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIE 274
Y +N E AF FL ++ K+G + L+ + C + G
Sbjct: 283 SYSTLINVLCNSGQIELAFSFLTQML------KRGCHPNIYTLSSLVKGCFLRGT----- 331
Query: 275 MFSVLGLY-EMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLT 333
F L L+ +M + + V YN L++ C + + M ++GC P T
Sbjct: 332 TFDALDLWNQMIRGF--GLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRT 389
Query: 334 YNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393
Y ++ K G A + +ML C P+ + Y + CR KF A + M
Sbjct: 390 YGSLINGFAKRGSLDGAVYIWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMS 449
Query: 394 KRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNML-YSLLASLHDKNNNP 452
K P + T AFIKG R + A K +++ N++ Y+ L K N
Sbjct: 450 KENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRI 509
Query: 453 VMAKNVLSEMMKNGLRPNVSVYRRVL 478
A + E+ G+ + S Y +L
Sbjct: 510 EEAYGLTREIFMRGVEWSSSTYNTLL 535
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 83/204 (40%), Gaps = 52/204 (25%)
Query: 317 DLLVEMRQVGCEPIT-----------------------------------LTYNYVLGVL 341
++ +++ GC+P TYN +L L
Sbjct: 132 EMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRDGFEPNVFTYNVLLKAL 191
Query: 342 CKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG----- 396
CKN + A +LL EM + C PDA++Y I C VG +VK G
Sbjct: 192 CKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVG-----------LVKEGRELAE 240
Query: 397 -LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMA 455
+P ++ + A I G + Y+ A++ + +K S + + YS L ++ + +A
Sbjct: 241 RFEPVVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELA 300
Query: 456 KNVLSEMMKNGLRPNVSVYRRVLK 479
+ L++M+K G PN+ ++K
Sbjct: 301 FSFLTQMLKRGCHPNIYTLSSLVK 324
Score = 42.7 bits (99), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 13/187 (6%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVG-CEPITLTYNYVLGVLCKNGQDADACELL 354
V +N IK +C + +M Q C P +TYN +L L K + +A L
Sbjct: 457 VPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLT 516
Query: 355 EEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF 414
E+ R + TY + SC G +A +M+ G P T I Y
Sbjct: 517 REIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQ 576
Query: 415 YRYEDAYKYVVLSA---DKYK----SSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGL 467
+ E A + + L + K++ S +N+++ L S + + + ++ L M+ G+
Sbjct: 577 GKAERAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRS-NCREDGVIL----LERMISAGI 631
Query: 468 RPNVSVY 474
P+++ +
Sbjct: 632 VPSIATW 638
Score = 41.2 bits (95), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 8/166 (4%)
Query: 253 VVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERK------VSYYNILIKEM 306
++E++++ + V A I+ G + A+ V ++ E++ + YN L+ +
Sbjct: 444 LIEIMSKENCAPSVPTFNAFIKGLCDAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGL 503
Query: 307 CRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDA 366
+ + L E+ G E + TYN +L C G A +L+ +M+ PD
Sbjct: 504 AKANRIEEAYGLTREIFMRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDE 563
Query: 367 ITYEIFIVYSCRVGKFDVAFNFFNQMV--KRGLQPRLATHAAFIKG 410
IT + I+ C+ GK + A + + +R +P + ++ I G
Sbjct: 564 ITMNMIILAYCKQGKAERAAQMLDLVSCGRRKWRPDVISYTNVIWG 609
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
Query: 289 IKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDA 348
++ E S YN L+ C L+ +M G P +T N ++ CK G+
Sbjct: 521 MRGVEWSSSTYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCKQGKAE 580
Query: 349 DACELLEEML--GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAA 406
A ++L+ + R PD I+Y I CR + +M+ G+ P +AT +
Sbjct: 581 RAAQMLDLVSCGRRKWRPDVISYTNVIWGLCRSNCREDGVILLERMISAGIVPSIATWSV 640
Query: 407 FIKGYFI 413
I + +
Sbjct: 641 LINCFIL 647
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 4/201 (1%)
Query: 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLG 359
N L+ +C L+ M + G +P +TY VL V+CK+GQ A A ELL +M
Sbjct: 181 NALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEE 240
Query: 360 RNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED 419
R DA+ Y I I C+ G D AFN FN+M +G + + + I+G+ R++D
Sbjct: 241 RKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDD 300
Query: 420 AYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLK 479
K + + + + +S L K A+ + EM++ G+ P+ Y ++
Sbjct: 301 GAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLID 360
Query: 480 HLHTSHQ----EHMAKCLSSR 496
+Q HM + S+
Sbjct: 361 GFCKENQLDKANHMLDLMVSK 381
Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 87/202 (43%)
Query: 289 IKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDA 348
IK + + Y LI+ C + LL +M + P + ++ ++ K G+
Sbjct: 275 IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLR 334
Query: 349 DACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFI 408
+A EL +EM+ R PD +TY I C+ + D A + + MV +G P + T I
Sbjct: 335 EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILI 394
Query: 409 KGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLR 468
GY +D + + + + + Y+ L + +AK + EM+ +R
Sbjct: 395 NGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454
Query: 469 PNVSVYRRVLKHLHTSHQEHMA 490
P++ Y+ +L L + + A
Sbjct: 455 PDIVSYKILLDGLCDNGEPEKA 476
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 5/145 (3%)
Query: 271 ALIEMFSVLGLYEMAKYVIKK-TERKVS----YYNILIKEMCRRCDFKGPRDLLVEMRQV 325
ALI+ F G A+ + K+ +R +S Y LI C+ +L M
Sbjct: 322 ALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSK 381
Query: 326 GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVA 385
GC P T+N ++ CK D EL +M R D +TY I C +GK +VA
Sbjct: 382 GCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVA 441
Query: 386 FNFFNQMVKRGLQPRLATHAAFIKG 410
F +MV R ++P + ++ + G
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDG 466
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 290 KKTERKVSY----YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG 345
K ERK+ Y+I+I +C+ +L EM G + + Y ++ C G
Sbjct: 237 KMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAG 296
Query: 346 QDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHA 405
+ D +LL +M+ R PD + + I + GK A +M++RG+ P T+
Sbjct: 297 RWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYT 356
Query: 406 AFIKGY 411
+ I G+
Sbjct: 357 SLIDGF 362
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 80/202 (39%)
Query: 280 GLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLG 339
GL K ++ YN LI+ C + ++L EM P ++Y +L
Sbjct: 406 GLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLD 465
Query: 340 VLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP 399
LC NG+ A E+ E++ D Y I I C K D A++ F + +G++P
Sbjct: 466 GLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKP 525
Query: 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVL 459
+ T+ I G +A + S + Y++L H + + ++
Sbjct: 526 DVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLI 585
Query: 460 SEMMKNGLRPNVSVYRRVLKHL 481
E+ + G + S + V+ L
Sbjct: 586 EEIKRCGFSVDASTVKMVVDML 607
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 1/201 (0%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
+ +NILI C+ +L +M G T+TYN ++ C+ G+ A EL +
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQ 446
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
EM+ R PD ++Y+I + C G+ + A F ++ K ++ + + I G
Sbjct: 447 EMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNAS 506
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ +DA+ K Y+++ K + A + +M ++G PN Y
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYN 566
Query: 476 RVLK-HLHTSHQEHMAKCLSS 495
+++ HL AK +
Sbjct: 567 ILIRAHLGEGDATKSAKLIEE 587
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 73/176 (41%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y ++K MC+ +LL +M + + + Y+ ++ LCK+G +A L EM
Sbjct: 215 YGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEME 274
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ D I Y I C G++D M+KR + P + +A I + +
Sbjct: 275 IKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLR 334
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+A + + S + Y+ L K N A ++L M+ G PN+ +
Sbjct: 335 EAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTF 390
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 81/177 (45%), Gaps = 6/177 (3%)
Query: 317 DLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS 376
DL EM + P + ++ + V+ + Q +L ++M + + T I I
Sbjct: 58 DLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCC 117
Query: 377 CRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSAD-KYKSSS 435
CR K +AF+ +++K G +P T + I G + R +A + V + +K +
Sbjct: 118 CRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTL 177
Query: 436 NMLYSLLAS--LHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMA 490
L +L+ L+ K ++ V+ ++ M++ G +PN Y VLK + S Q +A
Sbjct: 178 ITLNALVNGLCLNGKVSDAVL---LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 50/119 (42%)
Query: 363 HPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYK 422
PD +T+ I C G+ A ++MV+ G +P L T A + G + + DA
Sbjct: 139 EPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL 198
Query: 423 YVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
+ + + + Y + + K+ +A +L +M + ++ + Y ++ L
Sbjct: 199 LIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGL 257
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 21/167 (12%)
Query: 215 RQLLNDFNVYQVCLN--------EKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLV 266
R++ D Y++ L+ EKA + SK GI+ ++ + G C
Sbjct: 451 RRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNII-----IHGMCNA 505
Query: 267 SGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVG 326
S V ++F L L K + V YNI+I +C++ L +M + G
Sbjct: 506 SKVDDAWDLFCSLPL--------KGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDG 557
Query: 327 CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFI 373
P TYN ++ G + +L+EE+ DA T ++ +
Sbjct: 558 HSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVV 604
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 85.9 bits (211), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 6/200 (3%)
Query: 216 QLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEM 275
+ L+ V +C NE+ + L S K + +RV+ +N G S V ALI
Sbjct: 366 EFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA-YRVLREMNDNGFSPSVVTYNALING 424
Query: 276 FSVLGLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI 330
V G E A V++ + K V Y+ ++ CR D + EM + G +P
Sbjct: 425 HCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPD 484
Query: 331 TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFN 390
T+TY+ ++ C+ + +AC+L EEML PD TY I C G + A N
Sbjct: 485 TITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHN 544
Query: 391 QMVKRGLQPRLATHAAFIKG 410
+MV++G+ P + T++ I G
Sbjct: 545 EMVEKGVLPDVVTYSVLING 564
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 84/190 (44%)
Query: 289 IKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDA 348
+K E + YN++I +CR K +L EM + G +TYN ++ CK G
Sbjct: 268 LKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFH 327
Query: 349 DACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFI 408
A + EML P ITY I C+ G + A F +QM RGL P T+ +
Sbjct: 328 QALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLV 387
Query: 409 KGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLR 468
G+ +AY+ + D S S + Y+ L + H A VL +M + GL
Sbjct: 388 DGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLS 447
Query: 469 PNVSVYRRVL 478
P+V Y VL
Sbjct: 448 PDVVSYSTVL 457
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 84/181 (46%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN LIK C+ +F + EM + G P +TY ++ +CK G A E L++M
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
R P+ TY + + G + A+ +M G P + T+ A I G+ + + E
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
DA + +K S + YS + S ++ + A V EM++ G++P+ Y ++
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLI 492
Query: 479 K 479
+
Sbjct: 493 Q 493
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 14/183 (7%)
Query: 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377
+L EM G P +TYN ++ C G+ DA +LE+M + PD ++Y + C
Sbjct: 402 VLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFC 461
Query: 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR-------YEDAYKYVVLSADK 430
R D A +MV++G++P T+++ I+G+ R YE+ + V L D+
Sbjct: 462 RSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLR-VGLPPDE 520
Query: 431 YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMA 490
+ Y+ L + + + A + +EM++ G+ P+V Y ++ L+ + A
Sbjct: 521 FT------YTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREA 574
Query: 491 KCL 493
K L
Sbjct: 575 KRL 577
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 90/220 (40%), Gaps = 20/220 (9%)
Query: 271 ALIEMFSVLGLYEMA-----KYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV 325
ALI + + G E A + V K V Y++LI + ++ + + LL+++
Sbjct: 525 ALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYE 584
Query: 326 GCEPITLTYNYVL---------------GVLCKNGQDADACELLEEMLGRNCHPDAITYE 370
P +TY+ ++ C G +A ++ E MLG+N PD Y
Sbjct: 585 ESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYN 644
Query: 371 IFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK 430
I I CR G A+ + +MVK G T A +K + + +V
Sbjct: 645 IMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRS 704
Query: 431 YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN 470
+ S +L ++ + N + +VL+EM K+G PN
Sbjct: 705 CELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 112/260 (43%), Gaps = 13/260 (5%)
Query: 234 GFLPVLISSKALT----KKG-IWRVVEVLNQVGGSCLVSGVRA---LIEMFSVLGLYEMA 285
G P +I+ +L K G + R +E L+Q+ L R L++ FS G A
Sbjct: 340 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399
Query: 286 KYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGV 340
V+++ V YN LI C + +L +M++ G P ++Y+ VL
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459
Query: 341 LCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR 400
C++ +A + EM+ + PD ITY I C + A + + +M++ GL P
Sbjct: 460 FCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPD 519
Query: 401 LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLS 460
T+ A I Y + E A + +K + YS+L + +K + AK +L
Sbjct: 520 EFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLL 579
Query: 461 EMMKNGLRPNVSVYRRVLKH 480
++ P+ Y ++++
Sbjct: 580 KLFYEESVPSDVTYHTLIEN 599
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V Y LI +C+ D +LL EM ++G +P TYN ++ LCK+G +A +L+
Sbjct: 456 VVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVG 515
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
E + D +TY + C+ G+ D A +M+ +GLQP + T + G+ +
Sbjct: 516 EFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG 575
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
ED K + K + + ++ L + NN A + +M G+ P+ Y
Sbjct: 576 MLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYE 635
Query: 476 RVLK 479
++K
Sbjct: 636 NLVK 639
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 4/244 (1%)
Query: 263 SCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSY-YNILIKEMCRRCDFKGPRDLLVE 321
S +V+G E+ V L E+ K +K + SY Y +I +CR C + E
Sbjct: 285 STVVNGYCRFGELDKVWKLIEVMK---RKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSE 341
Query: 322 MRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK 381
M + G P T+ Y ++ CK G A + EM R+ PD +TY I C++G
Sbjct: 342 MIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD 401
Query: 382 FDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSL 441
A F++M +GL+P T I GY +DA++ S + + Y+
Sbjct: 402 MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTT 461
Query: 442 LASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501
L K + A +L EM K GL+PN+ Y ++ L S A L + +
Sbjct: 462 LIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG 521
Query: 502 LGSS 505
L +
Sbjct: 522 LNAD 525
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 75/176 (42%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y L+ C+ + +++L EM G +P +T+N ++ C +G D +LL ML
Sbjct: 529 YTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWML 588
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ P+A T+ + C A + M RG+ P T+ +KG+ +
Sbjct: 589 AKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMK 648
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+A+ K S S YS+L K + A+ V +M + GL + ++
Sbjct: 649 EAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 101/230 (43%)
Query: 277 SVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNY 336
S L L K + + V Y+I+I +C+ F L EM G + +TY+
Sbjct: 226 SALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSS 285
Query: 337 VLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG 396
++G LC +G+ D ++L EM+GRN PD +T+ I + GK A +N+M+ RG
Sbjct: 286 LIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRG 345
Query: 397 LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAK 456
+ P T+ + I G+ +A + L K + YS+L + + K
Sbjct: 346 IAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGM 405
Query: 457 NVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSSV 506
+ E+ GL PN Y ++ S + + AK L S + SV
Sbjct: 406 RLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSV 455
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 89/191 (46%), Gaps = 6/191 (3%)
Query: 302 LIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRN 361
LI +C + L+ M + G +P +TY VL LCK+G A A +L +M RN
Sbjct: 181 LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN 240
Query: 362 CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421
+ Y I I C+ G FD A + FN+M +G++ + T+++ I G +++D
Sbjct: 241 IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGA 300
Query: 422 KYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKH- 480
K + + + +S L + K + AK + +EM+ G+ P+ Y ++
Sbjct: 301 KMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGF 360
Query: 481 -----LHTSHQ 486
LH ++Q
Sbjct: 361 CKENCLHEANQ 371
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 1/198 (0%)
Query: 288 VIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQD 347
V K E + Y+ILI C+ L E+ G P T+TYN ++ C++G+
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 436
Query: 348 ADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAF 407
A EL +EM+ R P +TY I + C G+ + A F +M K + + +
Sbjct: 437 NAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNII 496
Query: 408 IKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGL 467
I G + +DA+ +DK + Y+++ K + A + +M ++G
Sbjct: 497 IHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGC 556
Query: 468 RPNVSVYRRVLK-HLHTS 484
P+ Y +++ HL S
Sbjct: 557 TPDDFTYNILIRAHLGGS 574
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%)
Query: 293 ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACE 352
E + I+I CR+ +L ++G EP T+T++ ++ C G+ ++A
Sbjct: 102 EHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVA 161
Query: 353 LLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFI 408
L++ M+ PD +T I C G+ A ++MV+ G QP T+ +
Sbjct: 162 LVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVL 217
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 290 KKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDAD 349
K + V YN++I +C++ L +M++ GC P TYN ++
Sbjct: 519 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLIS 578
Query: 350 ACELLEEM 357
+ EL+EEM
Sbjct: 579 SVELIEEM 586
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 50/119 (42%)
Query: 363 HPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYK 422
PD IT+ + C G+ A ++MV+ +P L T + I G + R +A
Sbjct: 137 EPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALV 196
Query: 423 YVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
+ + + Y + + K+ N +A ++ +M + ++ +V Y V+ L
Sbjct: 197 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSL 255
>sp|Q76C99|RF1_ORYSI Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica GN=Rf1
PE=2 SV=1
Length = 791
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 86/186 (46%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V YN +I +C+ ++L M + G P +TYN +L C +GQ +A L+
Sbjct: 231 VVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLK 290
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+M PD +TY + + Y C+ G+ A F+ M KRGL+P + T+ ++GY
Sbjct: 291 KMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKG 350
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ + + L + ++S+L + K A V S+M + GL PN Y
Sbjct: 351 ALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYG 410
Query: 476 RVLKHL 481
V+ L
Sbjct: 411 AVIGIL 416
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 81/188 (43%), Gaps = 3/188 (1%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEM---RQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
YNIL+K +C + +LL M R G P ++Y V+ K G A
Sbjct: 161 YNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYH 220
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
EML R PD +TY I C+ D A N MVK G+ P T+ + + GY
Sbjct: 221 EMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSG 280
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ ++A ++ + YSLL KN + A+ + M K GL+P ++ Y
Sbjct: 281 QPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYG 340
Query: 476 RVLKHLHT 483
+L+ T
Sbjct: 341 TLLQGYAT 348
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN LI +C ++ +L++EM G T+ +N ++ CK G+ ++ +L E M+
Sbjct: 444 YNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMV 503
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
P+ ITY I C GK D A + MV GL+P T++ I GY R E
Sbjct: 504 RIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRME 563
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
DA S + Y+++ + AK + + ++G + +S Y +L
Sbjct: 564 DALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIIL 623
Query: 479 KHL 481
L
Sbjct: 624 HGL 626
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 107/263 (40%), Gaps = 40/263 (15%)
Query: 271 ALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI 330
AL+EM +L L M + I ++ILI ++ + +MRQ G P
Sbjct: 351 ALVEMHGLLDL--MVRNGIHPDH---YVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPN 405
Query: 331 TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVA----- 385
+TY V+G+LCK+G+ DA E+M+ P I Y I C K++ A
Sbjct: 406 AVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELIL 465
Query: 386 -------------FN-----------------FFNQMVKRGLQPRLATHAAFIKGYFIFY 415
FN F MV+ G++P + T+ I GY +
Sbjct: 466 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAG 525
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ ++A K + + + YS L + + K + A + EM +G+ P++ Y
Sbjct: 526 KMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYN 585
Query: 476 RVLKHLHTSHQEHMAKCLSSRYS 498
+L+ L + + AK L R +
Sbjct: 586 IILQGLFQTRRTAAAKELYVRIT 608
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 80/187 (42%)
Query: 292 TERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADAC 351
E V Y++L+ +C+ R + M + G +P TY +L G +
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356
Query: 352 ELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411
LL+ M+ HPD + I I + GK D A F++M ++GL P T+ A I
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416
Query: 412 FIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV 471
R EDA Y D+ S N++Y+ L N A+ ++ EM+ G+ N
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 476
Query: 472 SVYRRVL 478
+ ++
Sbjct: 477 IFFNSII 483
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 84/184 (45%)
Query: 295 KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELL 354
+++ Y L++ + LL M + G P ++ ++ K G+ A +
Sbjct: 335 EITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVF 394
Query: 355 EEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF 414
+M + +P+A+TY I C+ G+ + A +F QM+ GL P + + I G
Sbjct: 395 SKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTC 454
Query: 415 YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
++E A + ++ D+ + + ++ + H K + ++ + M++ G++PNV Y
Sbjct: 455 NKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITY 514
Query: 475 RRVL 478
++
Sbjct: 515 NTLI 518
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 84/208 (40%), Gaps = 40/208 (19%)
Query: 288 VIKKTER-KVSYYNILIKEMCRRCDFKGPRDLLVE-MRQVGCEPITLTYNYVLGVLCKNG 345
VIKK R + L+K +C D+++ M ++GC P +YN +L LC
Sbjct: 113 VIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDEN 172
Query: 346 QDADACELLEEML---GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLA 402
+ +A ELL M G PD ++Y I + G D A++ +++M+ RG+ P +
Sbjct: 173 RSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVV 232
Query: 403 THAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEM 462
T+ + I A DK A VL+ M
Sbjct: 233 TYNSIIAAL-----------------------------CKAQAMDK------AMEVLNTM 257
Query: 463 MKNGLRPNVSVYRRVLKHLHTSHQEHMA 490
+KNG+ P+ Y +L +S Q A
Sbjct: 258 VKNGVMPDCMTYNSILHGYCSSGQPKEA 285
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 85/219 (38%), Gaps = 35/219 (15%)
Query: 298 YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEM 357
++N +I C+ L M ++G +P +TYN ++ C G+ +A +LL M
Sbjct: 478 FFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGM 537
Query: 358 LGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRY 417
+ P+ +TY I C++ + + A F +M G+ P + T+ ++G F R
Sbjct: 538 VSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRT 597
Query: 418 EDAYKYVV-------------------------LSADKYKSSSNM----------LYSLL 442
A + V L+ D + N+ ++++
Sbjct: 598 AAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIM 657
Query: 443 ASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
K AK++ NGL PN YR + +++
Sbjct: 658 IDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENI 696
Score = 40.0 bits (92), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 364 PDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKY 423
PD TY I I CR G+ D+ F ++K+G + +KG R DA
Sbjct: 85 PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144
Query: 424 VVLSADKYKSSSNML-YS-LLASLHDKNNNPVMAK--NVLSEMMKNGLRPNVSVYRRVL 478
V+ + N+ Y+ LL L D+N + + +++++ G P+V Y V+
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVI 203
>sp|Q9SFV9|PP218_ARATH Pentatricopeptide repeat-containing protein At3g07290,
mitochondrial OS=Arabidopsis thaliana GN=At3g07290 PE=2
SV=1
Length = 880
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 113/248 (45%), Gaps = 4/248 (1%)
Query: 250 IWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRR 309
I ++ VL+ G+ L+ G + + L ++++ + VSY +ILI +C
Sbjct: 221 ILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSKEVTCAPNSVSY-SILIHGLCEV 279
Query: 310 CDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITY 369
+ L +M + GC+P T TY ++ LC G A L +EM+ R C P+ TY
Sbjct: 280 GRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTY 339
Query: 370 EIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYV-VLSA 428
+ I CR GK + A +MVK + P + T+ A I GY R A++ + V+
Sbjct: 340 TVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEK 399
Query: 429 DKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL-HTSHQE 487
K + L+ L + P A ++L M+ NGL P++ Y ++ L H
Sbjct: 400 RACKPNVRTFNELMEGLC-RVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMN 458
Query: 488 HMAKCLSS 495
K LSS
Sbjct: 459 TAYKLLSS 466
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 9/199 (4%)
Query: 245 LTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYE-MAKYVIKKTERKVSYYNILI 303
+ +KGI L++V G+ L+ GV + + L + E + K I T + N+++
Sbjct: 502 MLRKGIS-----LDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSL---NVIL 553
Query: 304 KEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCH 363
+ + C K +L ++ ++G P +TY ++ L ++G + +LE M C
Sbjct: 554 DMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCL 613
Query: 364 PDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKY 423
P+ Y I I C+ G+ + A + M G+ P T+ +KGY + + A +
Sbjct: 614 PNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALET 673
Query: 424 VVLSADKYKSSSNMLYSLL 442
V ++ ++ +YS L
Sbjct: 674 VRAMVERGYELNDRIYSSL 692
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 78/192 (40%), Gaps = 13/192 (6%)
Query: 222 NVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGL 281
V +V A L L+ + LT V+ L+ + C V A++ + LGL
Sbjct: 520 GVCKVGKTRDALFILETLVKMRILTTPHSLNVI--LDMLSKGCKVKEELAMLGKINKLGL 577
Query: 282 YEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVL 341
V Y L+ + R D G +L M+ GC P Y ++ L
Sbjct: 578 VP-----------SVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGL 626
Query: 342 CKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRL 401
C+ G+ +A +LL M P+ +TY + + GK D A MV+RG +
Sbjct: 627 CQFGRVEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELND 686
Query: 402 ATHAAFIKGYFI 413
+++ ++G+ +
Sbjct: 687 RIYSSLLQGFVL 698
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 76/221 (34%), Gaps = 71/221 (32%)
Query: 332 LTYNYVLGVLCKNGQDADACELLEEML--------------------GRN---------- 361
+ Y ++ LCKNG A + ++L G N
Sbjct: 196 IDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDV 255
Query: 362 ------CHPDAITYEIFIVYSCRVGKF--------------------------------- 382
C P++++Y I I C VG+
Sbjct: 256 MSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRG 315
Query: 383 --DVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYS 440
D AFN F++M+ RG +P + T+ I G + E+A S + Y+
Sbjct: 316 LIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYN 375
Query: 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
L + + K+ V A +L+ M K +PNV + +++ L
Sbjct: 376 ALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 9/215 (4%)
Query: 269 VRALIEMFSVLGLYEMAKYV-IKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC 327
+R + + V +EM + + +K E V YNIL++ + + ++ L+ +M C
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329
Query: 328 EPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFN 387
+P +TY+ ++ LC++G+ +A LL+ M + PDA +Y+ I CR G+ DVA
Sbjct: 330 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 389
Query: 388 FFNQMVKRGLQPRLATH----AAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLA 443
F M+ G P + + A K E K + SS N ++S L
Sbjct: 390 FLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW 449
Query: 444 SLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
S DK + A +++ EMM NG+ P+ Y ++
Sbjct: 450 SSGDK----IRALHMILEMMSNGIDPDEITYNSMI 480
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 99/228 (43%), Gaps = 6/228 (2%)
Query: 252 RVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERK-----VSYYNILIKEM 306
RV+E+L + G V ALI F + + A V+ + K YNI+I +
Sbjct: 145 RVMEILEKFGQPD-VFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSL 203
Query: 307 CRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDA 366
C R +L ++ C+P +TY ++ G +A +L++EML R PD
Sbjct: 204 CSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDM 263
Query: 367 ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVL 426
TY I C+ G D AF + +G +P + ++ ++ ++E+ K +
Sbjct: 264 FTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTK 323
Query: 427 SADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+ + + YS+L + ++ A N+L M + GL P+ Y
Sbjct: 324 MFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSY 371
Score = 75.9 bits (185), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 2/187 (1%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN +I+ MC+ +++ + GCEP ++YN +L L G+ + +L+ +M
Sbjct: 266 YNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMF 325
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
C P+ +TY I I CR GK + A N M ++GL P ++ I + R +
Sbjct: 326 SEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLD 385
Query: 419 DAYKYV-VLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRV 477
A +++ + +D ++LA+L KN A + ++ + G PN S Y +
Sbjct: 386 VAIEFLETMISDGCLPDIVNYNTVLATLC-KNGKADQALEIFGKLGEVGCSPNSSSYNTM 444
Query: 478 LKHLHTS 484
L +S
Sbjct: 445 FSALWSS 451
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 1/123 (0%)
Query: 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEE 356
S YN + + D +++EM G +P +TYN ++ LC+ G +A ELL +
Sbjct: 439 SSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVD 498
Query: 357 MLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY-FIFY 415
M HP +TY I ++ C+ + + A N MV G +P T+ I+G F Y
Sbjct: 499 MRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGY 558
Query: 416 RYE 418
R E
Sbjct: 559 RAE 561
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 35/233 (15%)
Query: 284 MAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK 343
M K +K + V Y+ILI +CR + +LL M++ G P +Y+ ++ C+
Sbjct: 321 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 380
Query: 344 NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFN------------- 390
G+ A E LE M+ C PD + Y + C+ GK D A F
Sbjct: 381 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSS 440
Query: 391 ----------------------QMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSA 428
+M+ G+ P T+ + I ++A++ +V
Sbjct: 441 YNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMR 500
Query: 429 DKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
S + Y+++ K + A NVL M+ NG RPN + Y +++ +
Sbjct: 501 SCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553
Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 75/186 (40%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V Y ILI+ L+ EM G +P TYN ++ +CK G A E++
Sbjct: 228 VITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVR 287
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+ + C PD I+Y I + GK++ +M P + T++ I
Sbjct: 288 NLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDG 347
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ E+A + L +K + Y L + + +A L M+ +G P++ Y
Sbjct: 348 KIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN 407
Query: 476 RVLKHL 481
VL L
Sbjct: 408 TVLATL 413
Score = 35.8 bits (81), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
Query: 376 SCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSS 435
SCR G + + + MV++G P + IKG+F A + V+ +K+
Sbjct: 99 SCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVR-VMEILEKFGQPD 157
Query: 436 NMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
Y+ L + K N A VL M P+ Y ++ L
Sbjct: 158 VFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSL 203
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
Query: 342 CKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRL 401
C++G ++ LLE M+ + +PD I I + A + K G QP +
Sbjct: 100 CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDV 158
Query: 402 ATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSE 461
+ A I G+ R +DA + + K S + Y+++ +A VL++
Sbjct: 159 FAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQ 218
Query: 462 MMKNGLRPNVSVY 474
++ + +P V Y
Sbjct: 219 LLSDNCQPTVITY 231
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 91/201 (45%)
Query: 291 KTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350
K E V YN +I +C+ +L EM G P +TY+ ++ LC G+ +DA
Sbjct: 251 KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDA 310
Query: 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
LL +M+ R +PD T+ I + GK A +++MVKR + P + T+++ I G
Sbjct: 311 SRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING 370
Query: 411 YFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN 470
+ + R ++A + K+ + Y+ L K V EM + GL N
Sbjct: 371 FCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 430
Query: 471 VSVYRRVLKHLHTSHQEHMAK 491
Y +++ L + MA+
Sbjct: 431 TVTYNILIQGLFQAGDCDMAQ 451
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 71/157 (45%)
Query: 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377
L+ M GC+P +TY V+ LCK G A LL +M P + Y I C
Sbjct: 208 LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 267
Query: 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437
+ D A N F +M +G++P + T+++ I + R+ DA + + ++ +
Sbjct: 268 KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 327
Query: 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+S L K V A+ + EM+K + P++ Y
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTY 364
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 77/157 (49%)
Query: 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377
L+ +M G +P T+T+N ++ L + + ++A L++ M+ + C PD +TY + + C
Sbjct: 173 LVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLC 232
Query: 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437
+ G D+AFN N+M + L+P + + I G + +DA K + +
Sbjct: 233 KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVV 292
Query: 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
YS L S A +LS+M++ + P+V +
Sbjct: 293 TYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTF 329
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YNILI+ + + D +++ EM G P +TYN +L LCKNG+ A + E +
Sbjct: 434 YNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 493
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411
P TY I I C+ GK + ++ F + +G++P + + I G+
Sbjct: 494 RSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGF 546
Score = 62.4 bits (150), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 1/199 (0%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V YN LIK C+ + ++ EM Q G T+TYN ++ L + G A E+ +
Sbjct: 396 VVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFK 455
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
EM+ P+ +TY + C+ GK + A F + + ++P + T+ I+G
Sbjct: 456 EMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAG 515
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ ED + + K + Y+ + S + + A + EM ++G PN Y
Sbjct: 516 KVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYN 575
Query: 476 RVLK-HLHTSHQEHMAKCL 493
+++ L +E A+ +
Sbjct: 576 TLIRARLRDGDREASAELI 594
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 78/198 (39%), Gaps = 35/198 (17%)
Query: 284 MAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK 343
++ + +K V ++ LI + L EM + +P +TY+ ++ C
Sbjct: 314 LSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCM 373
Query: 344 NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT 403
+ + +A ++ E M+ ++C PD +TY I C+ + + F +M +RGL T
Sbjct: 374 HDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVT 433
Query: 404 HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463
+ I+G F + + MA+ + EM+
Sbjct: 434 YNILIQGLF-----------------------------------QAGDCDMAQEIFKEMV 458
Query: 464 KNGLRPNVSVYRRVLKHL 481
+G+ PN+ Y +L L
Sbjct: 459 SDGVPPNIMTYNTLLDGL 476
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 2/174 (1%)
Query: 321 EMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG 380
+M+ +G TY+ ++ C+ Q A +L +M+ P+ +T + C
Sbjct: 106 QMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSK 165
Query: 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYS 440
+ A +QM G QP T I G F+ + +A + K + Y
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225
Query: 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLS 494
++ + K + +A N+L++M + L P V +Y ++ L +HM L+
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL--CKYKHMDDALN 277
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 47/113 (41%)
Query: 291 KTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350
K E + YNI+I+ MC+ + DL + G +P + YN ++ C+ G +A
Sbjct: 496 KMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEA 555
Query: 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT 403
L +EM P++ Y I R G + + +M G +T
Sbjct: 556 DALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 608
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 6/156 (3%)
Query: 329 PITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNF 388
P + ++ +L + K + L E+M + TY I I CR + +A
Sbjct: 79 PSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAV 138
Query: 389 FNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYV-VLSADKYKSSSNMLYSLLAS--L 445
+M+K G +P + T ++ + GY R +A V + Y+ ++ +L+ L
Sbjct: 139 LGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFL 198
Query: 446 HDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
H+K + A ++ M+ G +P++ Y V+ L
Sbjct: 199 HNKASE---AMALIDRMVAKGCQPDLVTYGVVVNGL 231
Score = 35.4 bits (80), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 289 IKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDA 348
+K + V YN +I CR+ + L EM++ G P + YN ++ ++G
Sbjct: 529 LKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDRE 588
Query: 349 DACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF 386
+ EL++EM DA T + + G+ D +F
Sbjct: 589 ASAELIKEMRSCGFAGDASTIGL-VTNMLHDGRLDKSF 625
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 82.8 bits (203), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 5/234 (2%)
Query: 271 ALIEMFSVLGLYEMAKYVIKK-----TERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV 325
L+ F+ LG + K K V YNI+I MC+ D + R L EM+
Sbjct: 232 GLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFR 291
Query: 326 GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVA 385
G P T+TYN ++ K G+ D EEM C PD ITY I C+ GK +
Sbjct: 292 GLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIG 351
Query: 386 FNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASL 445
F+ +M GL+P + +++ + + + A K+ V + Y+ L
Sbjct: 352 LEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 411
Query: 446 HDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499
+ K N A + +EM++ G+ NV Y ++ L + + A+ L + +
Sbjct: 412 NCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDT 465
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 64/154 (41%)
Query: 321 EMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG 380
+M++ P T + N +L K G+ D ++M+G P TY I I C+ G
Sbjct: 217 KMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEG 276
Query: 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYS 440
+ A F +M RGL P T+ + I G+ R +D + D + Y+
Sbjct: 277 DVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYN 336
Query: 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
L + K + EM NGL+PNV Y
Sbjct: 337 ALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSY 370
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 2/200 (1%)
Query: 293 ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACE 352
E V YN LI C+ + EM+ G +P ++Y+ ++ CK G A +
Sbjct: 329 EPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIK 388
Query: 353 LLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412
+M P+ TY I +C++G AF N+M++ G++ + T+ A I G
Sbjct: 389 FYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLC 448
Query: 413 IFYRYEDAYKYVVLSADKYKSSSNML-YSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV 471
R ++A + + D N+ Y+ L K N A +L+E+ G++P++
Sbjct: 449 DAERMKEA-EELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDL 507
Query: 472 SVYRRVLKHLHTSHQEHMAK 491
+Y + L + + AK
Sbjct: 508 LLYGTFIWGLCSLEKIEAAK 527
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 76/183 (41%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V Y+ L+ C+ + V+MR+VG P TY ++ CK G +DA L
Sbjct: 367 VVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGN 426
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
EML + +TY I C + A F +M G+ P LA++ A I G+
Sbjct: 427 EMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAK 486
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ A + + + +LY AK V++EM + G++ N +Y
Sbjct: 487 NMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYT 546
Query: 476 RVL 478
++
Sbjct: 547 TLM 549
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 50/121 (41%)
Query: 292 TERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADAC 351
E V Y LI +C K +L +M G P +YN ++ K A
Sbjct: 433 VEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRAL 492
Query: 352 ELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411
ELL E+ GR PD + Y FI C + K + A N+M + G++ + + Y
Sbjct: 493 ELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAY 552
Query: 412 F 412
F
Sbjct: 553 F 553
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 79/194 (40%), Gaps = 1/194 (0%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y I +C + + ++ EM++ G + +L Y ++ K+G + LL+EM
Sbjct: 510 YGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMK 569
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR-GLQPRLATHAAFIKGYFIFYRY 417
+ +T+ + I C+ A ++FN++ GLQ A A I G +
Sbjct: 570 ELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQV 629
Query: 418 EDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRV 477
E A K Y+ L + K N + A + +M + G++ ++ Y +
Sbjct: 630 EAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSL 689
Query: 478 LKHLHTSHQEHMAK 491
+ L +Q A+
Sbjct: 690 VWGLSHCNQLQKAR 703
>sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630,
mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3
SV=1
Length = 627
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 90/195 (46%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YNILI C+ D K L EM G +P TY ++ VLC+ + +A EL E+++
Sbjct: 400 YNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVV 459
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
G+ PD + + C +G D AF+ +M + P T+ ++G ++E
Sbjct: 460 GKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFE 519
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+A + + + ++ Y+ L S + K + A V EM+ G P + Y +L
Sbjct: 520 EARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYNALL 579
Query: 479 KHLHTSHQEHMAKCL 493
K L + + +A+ L
Sbjct: 580 KGLSKNQEGELAEEL 594
Score = 82.4 bits (202), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 99/196 (50%), Gaps = 8/196 (4%)
Query: 279 LGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338
LG+ E+ + IK T + YN L++ R +G R ++ EM+ G +P TYN +L
Sbjct: 248 LGIMEV--FGIKPT---IVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPIL 302
Query: 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQ 398
+C G+ A E+L EM PD+++Y I I G ++AF + ++MVK+G+
Sbjct: 303 SWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRGCSNNGDLEMAFAYRDEMVKQGMV 359
Query: 399 PRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNV 458
P T+ I G F+ + E A + +K ++ Y++L + + ++ + A +
Sbjct: 360 PTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFAL 419
Query: 459 LSEMMKNGLRPNVSVY 474
EMM +G++P Y
Sbjct: 420 HDEMMTDGIQPTQFTY 435
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 57/125 (45%)
Query: 286 KYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG 345
K V K + + N L+ C + LL EM + P +TYN ++ LC G
Sbjct: 457 KVVGKGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEG 516
Query: 346 QDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHA 405
+ +A EL+ EM R PD I+Y I + G AF ++M+ G P L T+
Sbjct: 517 KFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEMLSLGFNPTLLTYN 576
Query: 406 AFIKG 410
A +KG
Sbjct: 577 ALLKG 581
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 73/172 (42%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN LI + + L+ E+R+ G ++TYN ++ C++G A L +EM+
Sbjct: 365 YNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMM 424
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
P TY I CR K A F ++V +G++P L + G+ +
Sbjct: 425 TDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMD 484
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN 470
A+ + + ++ Y+ L A+ ++ EM + G++P+
Sbjct: 485 RAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPD 536
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 55/112 (49%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN L++ +C F+ R+L+ EM++ G +P ++YN ++ K G A + +EML
Sbjct: 505 YNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGYSKKGDTKHAFMVRDEML 564
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
+P +TY + + + ++A +M G+ P ++ + I+
Sbjct: 565 SLGFNPTLLTYNALLKGLSKNQEGELAEELLREMKSEGIVPNDSSFCSVIEA 616
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 38/198 (19%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V +NI+I +C+ K + L M G +P +TYN ++ G+ A ++
Sbjct: 225 VYTFNIMINVLCKEGKLKKAKGFLGIMEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIIS 284
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
EM + PD TY + + C G+ A +M + GL P ++ I+G
Sbjct: 285 EMKSKGFQPDMQTYNPILSWMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRG----- 336
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
SN N + MA EM+K G+ P Y
Sbjct: 337 ------------------CSN------------NGDLEMAFAYRDEMVKQGMVPTFYTYN 366
Query: 476 RVLKHLHTSHQEHMAKCL 493
++ L ++ A+ L
Sbjct: 367 TLIHGLFMENKIEAAEIL 384
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 97/207 (46%), Gaps = 5/207 (2%)
Query: 280 GLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY 334
G + A + K+ E K V YN L++ +C+ + LL +M P +T+
Sbjct: 242 GCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITF 301
Query: 335 NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK 394
N +L V K G+ +A EL +EM+ R P+ ITY + C + A N + MV+
Sbjct: 302 NVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVR 361
Query: 395 RGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVM 454
P + T + IKGY + R +D K + + ++ + YS+L ++ +
Sbjct: 362 NKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKL 421
Query: 455 AKNVLSEMMKNGLRPNVSVYRRVLKHL 481
A+ + EM+ +G+ P+V Y +L L
Sbjct: 422 AEELFQEMVSHGVLPDVMTYGILLDGL 448
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 92/203 (45%), Gaps = 5/203 (2%)
Query: 276 FSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYN 335
+SVLG Y E + +N LIK + L+ M + GC+P +TYN
Sbjct: 143 YSVLGKVMKLGY-----EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYN 197
Query: 336 YVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR 395
++ +C++G + A +LL +M RN D TY I CR G D A + F +M +
Sbjct: 198 SIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK 257
Query: 396 GLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMA 455
G++ + T+ + ++G ++ D + + + + +++L + K A
Sbjct: 258 GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEA 317
Query: 456 KNVLSEMMKNGLRPNVSVYRRVL 478
+ EM+ G+ PN+ Y ++
Sbjct: 318 NELYKEMITRGISPNIITYNTLM 340
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 82/190 (43%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y+IL++ C+ K +L EM G P +TY +L LC NG+ A E+ E++
Sbjct: 406 YSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQ 465
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ Y I C+ GK + A+N F + +G++P + T+ I G
Sbjct: 466 KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLS 525
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+A + + + ++ Y+ L H ++ + + ++ EM G + S + V+
Sbjct: 526 EANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVI 585
Query: 479 KHLHTSHQEH 488
L + +
Sbjct: 586 DMLLSGELDK 595
Score = 55.8 bits (133), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Query: 332 LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQ 391
+TY+ ++ C++G+ A EL +EM+ PD +TY I + C GK + A F
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 463
Query: 392 MVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNN 451
+ K + + + I+G + EDA+ K + M Y+++ S K +
Sbjct: 464 LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 523
Query: 452 PVMAKNVLSEMMKNGLRPNVSVYRRVLK-HLHTSHQEHMAK 491
A +L +M ++G PN Y +++ HL AK
Sbjct: 524 LSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAK 564
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 50/117 (42%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V Y IL+ +C + ++ ++++ + + Y ++ +CK G+ DA L
Sbjct: 438 VMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFC 497
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412
+ + P+ +TY + I C+ G A +M + G P T+ I+ +
Sbjct: 498 SLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHL 554
Score = 39.3 bits (90), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%)
Query: 291 KTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350
K + + Y +I+ MC+ + +L + G +P +TY ++ LCK G ++A
Sbjct: 468 KMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEA 527
Query: 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQM 392
LL +M P+ TY I R G + +M
Sbjct: 528 NILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEM 569
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 51/114 (44%)
Query: 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLS 427
T I I CR K A++ +++K G +P T IKG F+ + +A V
Sbjct: 125 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRM 184
Query: 428 ADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
+ + Y+ + + ++ + +A ++L +M + ++ +V Y ++ L
Sbjct: 185 VENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSL 238
Score = 33.1 bits (74), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%)
Query: 290 KKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDAD 349
K + V Y ++I +C++ LL +M + G P TYN ++ ++G
Sbjct: 502 KGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTA 561
Query: 350 ACELLEEMLGRNCHPDAITYEIFI 373
+ +L+EEM DA + ++ I
Sbjct: 562 SAKLIEEMKSCGFSADASSIKMVI 585
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 35/78 (44%)
Query: 333 TYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQM 392
T N ++ C+ + A +L +++ PD T+ I GK A ++M
Sbjct: 125 TLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRM 184
Query: 393 VKRGLQPRLATHAAFIKG 410
V+ G QP + T+ + + G
Sbjct: 185 VENGCQPDVVTYNSIVNG 202
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 80.5 bits (197), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 92/191 (48%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
++ YN+ I +C+ + + ++ +VG P +TY V+ +NGQ A L +
Sbjct: 515 LTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYD 574
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
EML + +P ITY + I + G+ + AF + +M KRG++P + TH A + G
Sbjct: 575 EMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAG 634
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
++AY+Y+ ++ + Y++L S + + EM+ + P+ +R
Sbjct: 635 NIDEAYRYLCKMEEEGIPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEIEPDGYTHR 694
Query: 476 RVLKHLHTSHQ 486
+ KHL H+
Sbjct: 695 ALFKHLEKDHE 705
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 80/216 (37%), Gaps = 36/216 (16%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN LI +C + +G + L EM P +TY ++ KNG + A E+ +EML
Sbjct: 412 YNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEML 471
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV------------------------- 393
+ PD Y V R+G D AF +MV
Sbjct: 472 RKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNL 531
Query: 394 -----------KRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLL 442
+ GL P T+ I+GY +++ A K S + Y +L
Sbjct: 532 VKAIEFQRKIFRVGLVPDHVTYTTVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVL 591
Query: 443 ASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
H K A +EM K G+RPNV + +L
Sbjct: 592 IYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALL 627
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 99/263 (37%), Gaps = 38/263 (14%)
Query: 243 KALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNIL 302
+ + + GI V N + SC +G ++ + EM + I+ +E YNIL
Sbjct: 227 ETMIEHGIMPTVITFNTMLDSCFKAGDLERVDKIWL----EMKRRNIEFSE---VTYNIL 279
Query: 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNC 362
I + + R +MR+ G ++N ++ CK G DA + +EML
Sbjct: 280 INGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGI 339
Query: 363 HPDAITYEIFIVYSCRVGKFD--------------VAFN-----------------FFNQ 391
+P TY I+I C G+ D V++N F+
Sbjct: 340 YPTTSTYNIYICALCDFGRIDDARELLSSMAAPDVVSYNTLMHGYIKMGKFVEASLLFDD 399
Query: 392 MVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNN 451
+ + P + T+ I G E A + + + Y+ L KN N
Sbjct: 400 LRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGN 459
Query: 452 PVMAKNVLSEMMKNGLRPNVSVY 474
MA V EM++ G++P+ Y
Sbjct: 460 LSMATEVYDEMLRKGIKPDGYAY 482
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 1/196 (0%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN L+ + F L ++R P +TYN ++ LC++G A L EEM
Sbjct: 377 YNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQRLKEEMT 436
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ PD ITY + + G +A +++M+++G++P + G +
Sbjct: 437 TQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSD 496
Query: 419 DAYK-YVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRV 477
A++ + + A + + +Y++ K N V A ++ + GL P+ Y V
Sbjct: 497 KAFRLHEEMVATDHHAPDLTIYNVRIDGLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTV 556
Query: 478 LKHLHTSHQEHMAKCL 493
++ + Q MA+ L
Sbjct: 557 IRGYLENGQFKMARNL 572
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 95/207 (45%), Gaps = 5/207 (2%)
Query: 266 VSGVRALIEMFSVLGLYEMAKYVIKKTER-----KVSYYNILIKEMCRRCDFKGPRDLLV 320
V+ LI + G +E + Y+++K E+ + YN ++ C++ FK +LL
Sbjct: 193 VATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLD 252
Query: 321 EMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG 380
M+ G + TYN ++ LC++ + A LL +M R HP+ +TY I G
Sbjct: 253 HMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEG 312
Query: 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYS 440
K +A N+M+ GL P T A I G+ +++A K + K + S + Y
Sbjct: 313 KVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYG 372
Query: 441 LLASLHDKNNNPVMAKNVLSEMMKNGL 467
+L KN +A+ M +NG+
Sbjct: 373 VLLDGLCKNAEFDLARGFYMRMKRNGV 399
Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 4/184 (2%)
Query: 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEE 356
S Y+ILI+ R + ++ M G P T N +LG + K+G+D L+E
Sbjct: 124 SVYDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKE 183
Query: 357 MLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416
ML R PD T+ I I C G F+ + +M K G P + T+ + Y R
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243
Query: 417 YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKN--VLSEMMKNGLRPNVSVY 474
++ A + + K + Y++L +HD + +AK +L +M K + PN Y
Sbjct: 244 FKAAIELLDHMKSKGVDADVCTYNML--IHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTY 301
Query: 475 RRVL 478
++
Sbjct: 302 NTLI 305
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 53/110 (48%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y +L+ +C+ +F R + M++ G +TY ++ LCKNG +A LL EM
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFI 408
PD +TY I C+VG+F A ++ + GL P ++ I
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 480
Score = 59.7 bits (143), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 18/198 (9%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y L+K +C+ + L + V T+ YN +L +CK+G A A L EM+
Sbjct: 581 YGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMV 640
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG-LQPRLATHAAFIKGYFIFYRY 417
R+ PD+ TY I CR GK +A F + RG + P + F+ G F ++
Sbjct: 641 QRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQW 700
Query: 418 EDAYKYVVLSADKYKSSSNML--------YSLLASLHDKNNNPVMAKNVLSEMMKNGLRP 469
+ A Y D + +++ YS + + N ++L EM P
Sbjct: 701 K-AGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTN-------DLLPEMGNQNGGP 752
Query: 470 NVSVYRRVLKHLHTSHQE 487
N++ Y +L H ++ ++
Sbjct: 753 NLTTY-NILLHGYSKRKD 769
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 5/216 (2%)
Query: 271 ALIEMFSVLGLYEMAKYVIKKTER-----KVSYYNILIKEMCRRCDFKGPRDLLVEMRQV 325
ALI F +G ++ AK ++ + R Y+ LI CR K + M
Sbjct: 443 ALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILE 502
Query: 326 GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVA 385
G T+N ++ LCK G+ A+A E + M P+ ++++ I G+ A
Sbjct: 503 GHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKA 562
Query: 386 FNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASL 445
F+ F++M K G P T+ + +KG +A K++ + ++Y+ L +
Sbjct: 563 FSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTA 622
Query: 446 HDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
K+ N A ++ EM++ + P+ Y ++ L
Sbjct: 623 MCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGL 658
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 88/227 (38%), Gaps = 41/227 (18%)
Query: 290 KKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDAD 349
K + V YN+LI ++CR LL +MR+ P +TYN ++ G+
Sbjct: 257 KGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLI 316
Query: 350 ACELLEEML-----------------------------------GRNCHPDAITYEIFIV 374
A +LL EML + P ++Y + +
Sbjct: 317 ASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLD 376
Query: 375 YSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSS 434
C+ +FD+A F+ +M + G+ T+ I G ++A VVL + K
Sbjct: 377 GLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEA---VVLLNEMSKDG 433
Query: 435 SN---MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+ + YS L + K AK ++ + + GL PN +Y ++
Sbjct: 434 IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLI 480
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%)
Query: 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377
LL M ++ P ++ ++ + CKNG +A EL M D ++Y + I C
Sbjct: 951 LLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLC 1010
Query: 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
G +AF + +M G T+ A I+G
Sbjct: 1011 AKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 58/131 (44%)
Query: 279 LGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338
+GL + ++ + E +N+LI + C + DL+ M +G T + ++
Sbjct: 807 IGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMV 866
Query: 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQ 398
VL +N + ++ +L EM + P++ Y I CRVG AF +M+ +
Sbjct: 867 SVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKIC 926
Query: 399 PRLATHAAFIK 409
P +A ++
Sbjct: 927 PPNVAESAMVR 937
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
++ + L+ C+ + +L V M G + ++YN ++ LC G A A EL E
Sbjct: 964 IASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYE 1023
Query: 356 EMLGRNCHPDAITYEIFI 373
EM G +A TY+ I
Sbjct: 1024 EMKGDGFLANATTYKALI 1041
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 95/213 (44%)
Query: 279 LGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338
L L + K K E V Y +I +C + +L EM G P +TYN ++
Sbjct: 238 LALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297
Query: 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQ 398
LC G+ +DA LL +M+ R +P+ +T+ I + GK A +++M+KR +
Sbjct: 298 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 357
Query: 399 PRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNV 458
P + T+++ I G+ + R ++A L K + + Y+ L K +
Sbjct: 358 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMEL 417
Query: 459 LSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAK 491
EM + GL N Y +++ L + MA+
Sbjct: 418 FREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQ 450
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 4/183 (2%)
Query: 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377
L+ M GC+P TY V+ LCK G A LL++M D + Y I C
Sbjct: 207 LIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALC 266
Query: 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437
+ A N F +M +G++P + T+ + I+ + R+ DA + + ++ + + +
Sbjct: 267 NYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVV 326
Query: 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLK----HLHTSHQEHMAKCL 493
+S L K V A+ + EM+K + P++ Y ++ H +HM + +
Sbjct: 327 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 386
Query: 494 SSR 496
S+
Sbjct: 387 ISK 389
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V YN LIK C+ + +L EM Q G T+TYN ++ L + G A ++ +
Sbjct: 395 VVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFK 454
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+M+ PD ITY I + C+ GK + A F + K ++P + T+ I+G
Sbjct: 455 KMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAG 514
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ ED + + K + ++Y+ + S + A + EM ++G PN Y
Sbjct: 515 KVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYN 574
Query: 476 RVLK 479
+++
Sbjct: 575 TLIR 578
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 95/204 (46%), Gaps = 12/204 (5%)
Query: 288 VIKKTER----KVSY----YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLG 339
VI ER ++SY YNILI CRR +L +M ++G EP +T + +L
Sbjct: 99 VISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLN 158
Query: 340 VLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP 399
C + ++A L+++M P+ +T+ I K A ++MV RG QP
Sbjct: 159 GYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQP 218
Query: 400 RLATHAAFIKGYFIFYRYE-DAYKYVVLSADKYKSSSN-MLYSLLASLHDKNNNPVMAKN 457
L T+ + G + R + D ++ +K K ++ ++Y+ + N A N
Sbjct: 219 DLFTYGTVVNG--LCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALN 276
Query: 458 VLSEMMKNGLRPNVSVYRRVLKHL 481
+ +EM G+RPNV Y +++ L
Sbjct: 277 LFTEMDNKGIRPNVVTYNSLIRCL 300
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 15/218 (6%)
Query: 271 ALIEMFSVLG-LYEMAKYVIKKTERKVS----YYNILIKEMCRRCDFKGPRDLLVEMRQV 325
ALI+ F G L E K + +R + Y+ LI C + + M
Sbjct: 330 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 389
Query: 326 GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVA 385
C P +TYN ++ CK + + EL EM R + +TY I + G D+A
Sbjct: 390 DCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMA 449
Query: 386 FNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM-----LYS 440
F +MV G+ P + T++ + G + + E A L +Y S M Y+
Sbjct: 450 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA-----LVVFEYLQKSKMEPDIYTYN 504
Query: 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
++ K ++ + G++PNV +Y ++
Sbjct: 505 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMI 542
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 6/168 (3%)
Query: 317 DLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS 376
DL EM Q P + +N +L + K + L E M D +Y I I
Sbjct: 66 DLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCF 125
Query: 377 CRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYV-VLSADKYKSSS 435
CR + +A +M+K G +P + T ++ + GY R +A V + +Y+ ++
Sbjct: 126 CRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNT 185
Query: 436 NMLYSLLAS--LHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
+L+ LH+K + V ++ M+ G +P++ Y V+ L
Sbjct: 186 VTFNTLIHGLFLHNKASEAVA---LIDRMVARGCQPDLFTYGTVVNGL 230
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 42/102 (41%)
Query: 291 KTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350
K E + YNI+I+ MC+ + DL + G +P + Y ++ C+ G +A
Sbjct: 495 KMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEA 554
Query: 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQM 392
L EM P++ TY I R G + +M
Sbjct: 555 DALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM 596
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 12/116 (10%)
Query: 260 VGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLL 319
+ G C V ++F L L K + V Y +I CR+ + L
Sbjct: 507 IEGMCKAGKVEDGWDLFCSLSL--------KGVKPNVIIYTTMISGFCRKGLKEEADALF 558
Query: 320 VEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCH--PDAITYEIFI 373
EM++ G P + TYN ++ ++G A + EL++EM R+C DA T + I
Sbjct: 559 REMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEM--RSCGFVGDASTISMVI 612
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 1/161 (0%)
Query: 322 MRQVGCEPITLTYNYVLGVLCKNGQDADA-CELLEEMLGRNCHPDAITYEIFIVYSCRVG 380
MR++G P + N ++ LC+N DA ++ EM R C PD+ TY I CR G
Sbjct: 147 MREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFG 206
Query: 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYS 440
+ D A F +MV++ P + T+ + I G ++A +Y+ K + YS
Sbjct: 207 RIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYS 266
Query: 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
L K+ + A + MM G RPN+ Y ++ L
Sbjct: 267 SLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGL 307
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 79/204 (38%), Gaps = 40/204 (19%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V Y LI +C + L EM+ G EP TY+ ++ LCK+G+ A EL E
Sbjct: 227 VVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFE 286
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
M+ R C P+ +TY I C+ K A ++M +GL+P + I G+
Sbjct: 287 MMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAIS 346
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
++ + A N L EM+ G+ PN
Sbjct: 347 KFRE-----------------------------------AANFLDEMILGGITPN----- 366
Query: 476 RVLKHLHTSHQEHMAKCLSSRYSS 499
R+ ++H + + L + Y S
Sbjct: 367 RLTWNIHVKTSNEVVRGLCANYPS 390
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 83/198 (41%), Gaps = 8/198 (4%)
Query: 290 KKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDAD 349
K E V Y+ L+ +C+ +L M GC P +TY ++ LCK + +
Sbjct: 256 KGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQE 315
Query: 350 ACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP-------RLA 402
A ELL+ M + PDA Y I C + KF A NF ++M+ G+ P +
Sbjct: 316 AVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVK 375
Query: 403 THAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEM 462
T ++G Y Y+ + + L SL+ L K A ++ E+
Sbjct: 376 TSNEVVRGLCANYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQ-KAVQLVDEI 434
Query: 463 MKNGLRPNVSVYRRVLKH 480
+ +G P+ ++ ++ H
Sbjct: 435 VTDGCIPSKGTWKLLIGH 452
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 73/209 (34%), Gaps = 42/209 (20%)
Query: 312 FKGPRDLLVEMRQVGC---EPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAIT 368
FK DL+V M+ C E I L+ G + + D+ + +M +C P
Sbjct: 67 FKAAEDLIVRMKIENCVVSEDILLSICRGYG---RVHRPFDSLRVFHKMKDFDCDPSQKA 123
Query: 369 YEIFIVYSCRVGKFDVAFNF------------------------------------FNQM 392
Y + + ++AF F F +M
Sbjct: 124 YVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEM 183
Query: 393 VKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNP 452
KRG P T+ I G F R ++A K +K + + + Y+ L + + N
Sbjct: 184 PKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNV 243
Query: 453 VMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
A L EM G+ PNV Y ++ L
Sbjct: 244 DEAMRYLEEMKSKGIEPNVFTYSSLMDGL 272
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 79.7 bits (195), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%)
Query: 291 KTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350
K E V Y+ +I +C+ +L EM G P TY+ ++ LC G+ +DA
Sbjct: 235 KIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDA 294
Query: 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
LL +ML R +P+ +T+ I + GK A F++M++R + P + T+ + I G
Sbjct: 295 SRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLING 354
Query: 411 YFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN 470
+ + R ++A + L K + Y+ L + K V + +M + GL N
Sbjct: 355 FCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGN 414
Query: 471 VSVYRRVL 478
Y ++
Sbjct: 415 TVTYTTLI 422
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 1/161 (0%)
Query: 319 LVEMRQV-GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377
LVE V GC+P +TY V+ LCK G+ A LL +M D + Y I C
Sbjct: 192 LVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLC 251
Query: 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437
+ D A N F +M +G++P + T+++ I + R+ DA + + ++ + + +
Sbjct: 252 KYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVV 311
Query: 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
++ L K + A+ + EM++ + PN+ Y ++
Sbjct: 312 TFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLI 352
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 88/182 (48%), Gaps = 4/182 (2%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YNI+I +CRR +L +M ++G P +T N +L C + ++A L+++M+
Sbjct: 103 YNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 162
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
PD +T+ + + K A +MV +G QP L T+ A I G + R E
Sbjct: 163 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING--LCKRGE 220
Query: 419 DAYKYVVLSA-DKYKSSSN-MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRR 476
+L+ +K K ++ ++YS + K + A N+ +EM G+RP+V Y
Sbjct: 221 PDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSS 280
Query: 477 VL 478
++
Sbjct: 281 LI 282
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 76/184 (41%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI + D + + +M G P +TYN +L LCKNG+ A + E +
Sbjct: 418 YTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 477
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
PD TY I C+ GK + ++ F + +G++P + + I G+ E
Sbjct: 478 KSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKE 537
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+AY + + + Y+ L H ++ + + ++ EM + S Y V
Sbjct: 538 EAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVT 597
Query: 479 KHLH 482
LH
Sbjct: 598 DMLH 601
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 73/185 (39%)
Query: 290 KKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDAD 349
+K V +N LI + L EM Q +P +TYN ++ C + + +
Sbjct: 304 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE 363
Query: 350 ACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIK 409
A ++ M+ ++C PD +TY I C+ K F M +RGL T+ I
Sbjct: 364 AQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIH 423
Query: 410 GYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP 469
G+F ++A + M Y+ L KN A V + K+ + P
Sbjct: 424 GFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEP 483
Query: 470 NVSVY 474
++ Y
Sbjct: 484 DIYTY 488
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 67/161 (41%)
Query: 321 EMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG 380
+M +G TYN ++ LC+ Q + A +L +M+ P +T + C
Sbjct: 90 KMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGN 149
Query: 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYS 440
+ A +QMV+ G QP T + G F + +A V K + Y
Sbjct: 150 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 209
Query: 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
+ + K P +A N+L++M K + +V +Y V+ L
Sbjct: 210 AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSL 250
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 83/204 (40%), Gaps = 1/204 (0%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V YN LI C+ +L +M + G T+TY ++ + +A + +
Sbjct: 380 VVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFK 439
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+M+ HP+ +TY + C+ GK + A F + K ++P + T+ +G
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAG 499
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ ED + + K + Y+ + S K A + +M ++G P+ Y
Sbjct: 500 KVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYN 559
Query: 476 RVLK-HLHTSHQEHMAKCLSSRYS 498
+++ HL + A+ + S
Sbjct: 560 TLIRAHLRDGDKAASAELIKEMRS 583
Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
Query: 289 IKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDA 348
+K + V YN +I C++ + L ++M++ G P + TYN ++ ++G A
Sbjct: 513 LKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKA 572
Query: 349 DACELLEEMLGRNCH--PDAITYEIFIVYSCRVGKFDVAF 386
+ EL++EM R+C DA TY + + G+ D F
Sbjct: 573 ASAELIKEM--RSCRFAGDASTYGL-VTDMLHDGRLDKGF 609
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 89/200 (44%)
Query: 279 LGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338
L L + K K E V YN +I +C+ +L EM G P TY+ ++
Sbjct: 241 LALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLI 300
Query: 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQ 398
LC G+ +DA LL +M+ R +P+ +T+ I + GK A +++M+KR +
Sbjct: 301 SCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 360
Query: 399 PRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNV 458
P + T+++ I G+ + R ++A L K + + YS L K +
Sbjct: 361 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMEL 420
Query: 459 LSEMMKNGLRPNVSVYRRVL 478
EM + GL N Y ++
Sbjct: 421 FREMSQRGLVGNTVTYTTLI 440
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 86/183 (46%), Gaps = 4/183 (2%)
Query: 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377
L+ +M Q GC+P +TY V+ LCK G A LL++M D + Y I C
Sbjct: 210 LVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLC 269
Query: 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437
+ D A N F +M +G++P + T+++ I + R+ DA + + ++ + + +
Sbjct: 270 KYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVV 329
Query: 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLK----HLHTSHQEHMAKCL 493
+S L K V A+ + EM+K + P++ Y ++ H +HM + +
Sbjct: 330 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 389
Query: 494 SSR 496
S+
Sbjct: 390 ISK 392
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 6/184 (3%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y ++ +C+R D LL +M + E + YN ++ LCK DA L EM
Sbjct: 226 YGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMD 285
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ PD TY I C G++ A + M++R + P + T +A I + +
Sbjct: 286 NKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 345
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLAS---LHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+A K + YS L + +HD+ + AK++ M+ PNV Y
Sbjct: 346 EAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE---AKHMFELMISKDCFPNVVTYS 402
Query: 476 RVLK 479
++K
Sbjct: 403 TLIK 406
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 4/182 (2%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y+I I CRR +L +M ++G EP +T + +L C + + +DA L+++M+
Sbjct: 121 YSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMV 180
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
PD T+ I K A +QMV+RG QP L T+ + G + R +
Sbjct: 181 EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG--LCKRGD 238
Query: 419 -DAYKYVVLSADKYKSSSN-MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRR 476
D ++ +K K ++ ++Y+ + K + A N+ +EM G+RP+V Y
Sbjct: 239 IDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSS 298
Query: 477 VL 478
++
Sbjct: 299 LI 300
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI + D + + +M VG P LTYN +L LCKNG+ A A + E +
Sbjct: 436 YTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQ 495
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
PD TY I I C+ GK + + F + +G+ P + + I G+ E
Sbjct: 496 RSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKE 555
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+A + + ++ Y+ L ++ + + ++ EM G + S V
Sbjct: 556 EADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVT 615
Query: 479 KHLH 482
LH
Sbjct: 616 NMLH 619
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 94/200 (47%), Gaps = 3/200 (1%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELL- 354
V Y+ LIK C+ + +L EM Q G T+TY ++ + +D D +++
Sbjct: 398 VVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQ-ARDCDNAQMVF 456
Query: 355 EEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF 414
++M+ HP+ +TY I + C+ GK A F + + ++P + T+ I+G
Sbjct: 457 KQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKA 516
Query: 415 YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+ ED ++ + K S + + Y+ + S + + A ++L +M ++G PN Y
Sbjct: 517 GKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTY 576
Query: 475 RRVLK-HLHTSHQEHMAKCL 493
+++ L +E A+ +
Sbjct: 577 NTLIRARLRDGDREASAELI 596
Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 6/168 (3%)
Query: 317 DLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS 376
DL +M + P + +N +L + K + L E+M D TY IFI
Sbjct: 69 DLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCF 128
Query: 377 CRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSAD-KYKSSS 435
CR + +A +M+K G +P + T ++ + GY R DA V + YK +
Sbjct: 129 CRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDT 188
Query: 436 NMLYSLLAS--LHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
+L+ LH+K + V ++ +M++ G +P++ Y V+ L
Sbjct: 189 FTFTTLIHGLFLHNKASEAVA---LVDQMVQRGCQPDLVTYGTVVNGL 233
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 81/196 (41%), Gaps = 2/196 (1%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
+N L+ + + F+ L +M+ +G TY+ + C+ Q + A +L +M+
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
PD +T + C + A +QMV+ G +P T I G F+ +
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKAS 205
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+A V + + Y + + K + +A ++L +M K + +V +Y ++
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTII 265
Query: 479 KHLHTSHQEHMAKCLS 494
L +HM L+
Sbjct: 266 DGL--CKYKHMDDALN 279
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%)
Query: 293 ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACE 352
E + YNI+I+ MC+ + +L + G P + YN ++ C+ G +A
Sbjct: 500 EPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADS 559
Query: 353 LLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT 403
LL++M P++ TY I R G + + +M G +T
Sbjct: 560 LLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 610
Score = 37.7 bits (86), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 260 VGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLL 319
+ G C V E+F L L ++ VI YN +I CR+ + LL
Sbjct: 510 IEGMCKAGKVEDGWELFCNLSLKGVSPNVIA--------YNTMISGFCRKGSKEEADSLL 561
Query: 320 VEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNC 362
+M++ G P + TYN ++ ++G + EL++EM R+C
Sbjct: 562 KKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEM--RSC 602
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 79.0 bits (193), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y L+ +C+ LL EM+ GC P + YN ++ LCK G +L++ M
Sbjct: 225 YCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMF 284
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ C P+ +TY I C GK D A + +MV P T+ I G R
Sbjct: 285 LKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAT 344
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
DA + + ++ + +YS+L S K A ++ +M + G +PN+ VY ++
Sbjct: 345 DAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLV 404
Query: 479 KHLHTSHQEHMAKCLSSR 496
L + + AK + +R
Sbjct: 405 DGLCREGKPNEAKEILNR 422
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 83/181 (45%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN+LI +C++ D L+ M GC P +TYN ++ LC G+ A LLE M+
Sbjct: 260 YNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMV 319
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
C P+ +TY I + + A + M +RG ++ I G F + E
Sbjct: 320 SSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAE 379
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+A A+K + ++YS+L + P AK +L+ M+ +G PN Y ++
Sbjct: 380 EAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLM 439
Query: 479 K 479
K
Sbjct: 440 K 440
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 82/184 (44%), Gaps = 2/184 (1%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI + ++ LL M + G Y+ ++ L K G+ +A L +M
Sbjct: 330 YGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMA 389
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ C P+ + Y + + CR GK + A N+M+ G P T+++ +KG+F E
Sbjct: 390 EKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCE 449
Query: 419 DAYKYVVLSADKYKSSSNML-YSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRV 477
+A + V DK S N YS+L A V S+M+ G++P+ Y +
Sbjct: 450 EAVQ-VWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSI 508
Query: 478 LKHL 481
+K L
Sbjct: 509 IKGL 512
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 101/218 (46%), Gaps = 5/218 (2%)
Query: 257 LNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPR 316
LNQ S L+SG+ + + L+ K K + + Y++L+ +CR +
Sbjct: 360 LNQHIYSVLISGLFKEGKAEEAMSLWR--KMAEKGCKPNIVVYSVLVDGLCREGKPNEAK 417
Query: 317 DLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS 376
++L M GC P TY+ ++ K G +A ++ +EM C + Y + I
Sbjct: 418 EILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGL 477
Query: 377 CRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYK--YVVLSADKYKSS 434
C VG+ A +++M+ G++P +++ IKG + A K + +L ++ KS
Sbjct: 478 CGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQ 537
Query: 435 SNML-YSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV 471
+++ Y++L + A ++L+ M+ G P+V
Sbjct: 538 PDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDV 575
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 65/152 (42%), Gaps = 22/152 (14%)
Query: 258 NQVGGSCLVSGVRALIEMFSVLGLY-EMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPR 316
+ V S ++ G+ + M + L LY EM K++ V YNIL+ +C + D
Sbjct: 501 DTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAV 560
Query: 317 DLLVEMRQVGCEPITLTYNYVLGVL------CKNGQD---------------ADACELLE 355
DLL M GC+P +T N L L C G+ + AC ++E
Sbjct: 561 DLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTIVE 620
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFN 387
MLG+ P T+ + + C+ K + A +
Sbjct: 621 VMLGKYLAPKTSTWAMIVREICKPKKINAAID 652
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEM---RQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
Y+ +IK +C L EM + +P +TYN +L LC + A +LL
Sbjct: 505 YSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLN 564
Query: 356 EMLGRNCHPDAITYEIFI-VYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFI 408
ML R C PD IT F+ S + D +F ++V R L+ + + A I
Sbjct: 565 SMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVRLLKRQRVSGACTI 618
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 2/183 (1%)
Query: 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLG 359
N LI + R L EM + GC P ++YN ++ LCK G+ +A ++EML
Sbjct: 468 NALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLE 527
Query: 360 RNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED 419
PD TY I + CR K D+A ++Q ++ GL+ + H I G + +D
Sbjct: 528 NGWKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDD 587
Query: 420 AYKYVVLSADKYKSSSNML-YSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
A V+ + + ++N++ Y+ L K + A + M K GL+P++ Y ++
Sbjct: 588 AMT-VMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIM 646
Query: 479 KHL 481
K L
Sbjct: 647 KGL 649
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 7/184 (3%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN+LIK C++ +F+ R L M + G +P +Y+ V+ L K G+ DA EL +EM
Sbjct: 152 YNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMS 211
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR-GLQPRLATHAAFIKGYFIFYRY 417
R PD Y I I + A ++++++ + P + TH I G R
Sbjct: 212 ERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRV 271
Query: 418 EDAYKYVVLSADKYKSSSNMLY---SLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+D K + K LY SL+ L D N A++V +E+ + +V Y
Sbjct: 272 DDCLK--IWERMKQNEREKDLYTYSSLIHGLCDAGNVD-KAESVFNELDERKASIDVVTY 328
Query: 475 RRVL 478
+L
Sbjct: 329 NTML 332
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 6/167 (3%)
Query: 252 RVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT------ERKVSYYNILIKE 305
R+VE++ C ++I+ + + + A V K+ E + YN L+
Sbjct: 64 RIVELIRSQECKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNA 123
Query: 306 MCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD 365
+ L G P TYN ++ + CK + A L+ M PD
Sbjct: 124 FVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPD 183
Query: 366 AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412
+Y I + GK D A F++M +RG+ P + + I G+
Sbjct: 184 VFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFL 230
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 72/167 (43%), Gaps = 2/167 (1%)
Query: 317 DLLVEMRQV-GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVY 375
D+ MR++ GCEP +YN +L + Q L P+ TY + I
Sbjct: 99 DVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKM 158
Query: 376 SCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSS 435
SC+ +F+ A F + M K G +P + +++ I + +DA + +++ +
Sbjct: 159 SCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPD 218
Query: 436 NMLYSLLASLHDKNNNPVMAKNVLSEMMKN-GLRPNVSVYRRVLKHL 481
Y++L K + A + ++++ + PNV + ++ L
Sbjct: 219 VTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGL 265
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 109/291 (37%), Gaps = 28/291 (9%)
Query: 202 IDNCGRLDD----YETMRQLLNDFNVYQ-------VCLN---EKAFGFLPVLISSKALTK 247
+ CGR+DD +E M+Q + ++Y +C +KA L KA
Sbjct: 265 LSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASID 324
Query: 248 KGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMC 307
VV +GG C ++ +E++ ++ K + YNILIK +
Sbjct: 325 -----VVTYNTMLGGFCRCGKIKESLELWRIME---------HKNSVNIVSYNILIKGLL 370
Query: 308 RRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAI 367
+ M G TY + LC NG A +++E+ H D
Sbjct: 371 ENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVY 430
Query: 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLS 427
Y I C+ + + A N +M K G++ A I G R +A ++
Sbjct: 431 AYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREM 490
Query: 428 ADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+ + Y++L K A + EM++NG +P++ Y +L
Sbjct: 491 GKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILL 541
Score = 40.4 bits (93), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 1/117 (0%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEM-RQVGCEPITLTYNYVLGVLCKNGQDADACELL 354
V+ YNILI + D K +L + P T+N ++ L K G+ D ++
Sbjct: 219 VTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIW 278
Query: 355 EEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411
E M D TY I C G D A + FN++ +R + T+ + G+
Sbjct: 279 ERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGF 335
Score = 39.7 bits (91), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 42/118 (35%)
Query: 293 ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACE 352
E V +NILI +C ++ M C +TYN ++ K G A
Sbjct: 566 ETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATV 625
Query: 353 LLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
+ M PD I+Y + C A FF+ G+ P + T ++
Sbjct: 626 IWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRA 683
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 92/208 (44%)
Query: 279 LGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338
L L + K K E V YN +I +C + +L EM G P +TYN ++
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298
Query: 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQ 398
LC G+ +DA LL +M+ R +P+ +T+ I + GK A +++M+KR +
Sbjct: 299 RCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSID 358
Query: 399 PRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNV 458
P + T+++ I G+ + R ++A L K + + Y+ L K +
Sbjct: 359 PDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMEL 418
Query: 459 LSEMMKNGLRPNVSVYRRVLKHLHTSHQ 486
EM + GL N Y ++ + +
Sbjct: 419 FREMSQRGLVGNTVTYTTLIHGFFQARE 446
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 6/197 (3%)
Query: 286 KYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG 345
+ V+K + + Y I++ +C+R D LL +M Q EP + YN ++ LC
Sbjct: 211 RMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYK 270
Query: 346 QDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHA 405
DA L EM + P+ +TY I C G++ A + M++R + P + T +
Sbjct: 271 NVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFS 330
Query: 406 AFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLAS---LHDKNNNPVMAKNVLSEM 462
A I + + +A K + YS L + +HD+ + AK++ M
Sbjct: 331 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE---AKHMFELM 387
Query: 463 MKNGLRPNVSVYRRVLK 479
+ PNV Y ++K
Sbjct: 388 ISKDCFPNVVTYNTLIK 404
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 4/202 (1%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
+N LI + R L+ M GC+P +TY V+ LCK G A LL++M
Sbjct: 189 FNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKME 248
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
P + Y I C + A N F +M +G++P + T+ + I+ + R+
Sbjct: 249 QGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWS 308
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
DA + + ++ + + + +S L K V A+ + EM+K + P++ Y ++
Sbjct: 309 DASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLI 368
Query: 479 K----HLHTSHQEHMAKCLSSR 496
H +HM + + S+
Sbjct: 369 NGFCMHDRLDEAKHMFELMISK 390
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 80/183 (43%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y+ILI CRR +L +M ++G EP +T N +L C + +DA L+ +M+
Sbjct: 119 YSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMV 178
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
PD+ T+ I R + A ++MV +G QP L T+ + G +
Sbjct: 179 EMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDID 238
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
A + ++Y+ + N A N+ +EM G+RPNV Y ++
Sbjct: 239 LALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 298
Query: 479 KHL 481
+ L
Sbjct: 299 RCL 301
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 1/211 (0%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V YN LIK C+ +L EM Q G T+TY ++ + + +A + +
Sbjct: 396 VVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFK 455
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+M+ PD +TY I + C GK + A F + + ++P + T+ I+G
Sbjct: 456 QMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAG 515
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ ED + + K + + Y+ + S + A + EM + G P+ Y
Sbjct: 516 KVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYN 575
Query: 476 RVLK-HLHTSHQEHMAKCLSSRYSSLSLGSS 505
+++ HL + A+ + S +G +
Sbjct: 576 TLIRAHLRDGDKAASAELIREMRSCRFVGDA 606
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 68/161 (42%)
Query: 321 EMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG 380
+M+ +G TY+ ++ C+ Q + A +L +M+ PD +T + C
Sbjct: 106 QMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGN 165
Query: 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYS 440
+ A + QMV+ G QP T I G F R +A V K + Y
Sbjct: 166 RISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYG 225
Query: 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
++ + K + +A ++L +M + + P V +Y ++ L
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDAL 266
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 2/154 (1%)
Query: 329 PITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNF 388
P + ++ +L + K + L E+M + TY I I CR + +A
Sbjct: 79 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAV 138
Query: 389 FNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSAD-KYKSSSNMLYSLLASLHD 447
+M+K G +P + T + + G+ R DA V + Y+ S +L+ L
Sbjct: 139 LAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF- 197
Query: 448 KNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
++N A ++ M+ G +P++ Y V+ L
Sbjct: 198 RHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGL 231
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 93/185 (50%), Gaps = 4/185 (2%)
Query: 299 YNILIKEMCRRCDFKGPRDL--LVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEE 356
+NI+I C C F+ L L +M ++G EP +T ++ C+ + +DA L+++
Sbjct: 123 FNIVINCFC--CCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDK 180
Query: 357 MLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416
M+ PD + Y I C+ + + AF+FF ++ ++G++P + T+ A + G R
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSR 240
Query: 417 YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRR 476
+ DA + + K + + + YS L KN + AK + EM++ + P++ Y
Sbjct: 241 WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 300
Query: 477 VLKHL 481
++ L
Sbjct: 301 LINGL 305
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 5/197 (2%)
Query: 290 KKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344
K+ ERK V Y L+ +C + LL +M + P +TY+ +L KN
Sbjct: 214 KEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKN 273
Query: 345 GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATH 404
G+ +A EL EEM+ + PD +TY I C + D A F+ MV +G + ++
Sbjct: 274 GKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSY 333
Query: 405 AAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464
I G+ R ED K + + S+ + Y+ L + + A+ S+M
Sbjct: 334 NTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDF 393
Query: 465 NGLRPNVSVYRRVLKHL 481
G+ P++ Y +L L
Sbjct: 394 FGISPDIWTYNILLGGL 410
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN LI+ + D ++ +M G P TYN +LG LC NG+ A + E+M
Sbjct: 368 YNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 427
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
R D +TY I C+ GK + A++ F + +GL+P + T+ + G
Sbjct: 428 KREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSG 479
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 84/193 (43%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN +I +C+ D E+ + G P +TY ++ LC + + +DA LL +M+
Sbjct: 193 YNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMI 252
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ P+ ITY + + GK A F +MV+ + P + T+++ I G + R +
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+A + L K + + Y+ L + K + EM + GL N Y ++
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372
Query: 479 KHLHTSHQEHMAK 491
+ + A+
Sbjct: 373 QGFFQAGDVDKAQ 385
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 36/176 (20%)
Query: 321 EMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG 380
+M +G T+N V+ C Q + A +L +ML PD +T + CR
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRN 169
Query: 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYS 440
+ A + ++MV+ G +P + + A I R DA+ +
Sbjct: 170 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDF----------------- 212
Query: 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL-HTSHQEHMAKCLSS 495
E+ + G+RPNV Y ++ L ++S A+ LS
Sbjct: 213 ------------------FKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSD 250
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YNIL+ +C + + + +M++ + +TY V+ +CK G+ +A L +
Sbjct: 403 YNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLS 462
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL 397
+ PD +TY + C G + +M + GL
Sbjct: 463 LKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGL 501
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 88/195 (45%)
Query: 280 GLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLG 339
LY + V + V YN +I +C+ DLL M + G P +TYN ++
Sbjct: 170 ALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLIS 229
Query: 340 VLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP 399
LC +G+ +DA ++ M R +PD T+ I + G+ A F+ +M++R L P
Sbjct: 230 GLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDP 289
Query: 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVL 459
+ T++ I G ++ R ++A + K + YS+L + + K+ +
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLF 349
Query: 460 SEMMKNGLRPNVSVY 474
EM + G+ N Y
Sbjct: 350 CEMSQRGVVRNTVTY 364
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%)
Query: 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLG 359
NIL+ CR L +M ++G EP +T+ +L C+ + DA + ++M+G
Sbjct: 120 NILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVG 179
Query: 360 RNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED 419
P+ + Y I C+ + D A + N+M K G+ P + T+ + I G R+ D
Sbjct: 180 MGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSD 239
Query: 420 AYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
A + V + ++ L K A+ EM++ L P++ Y
Sbjct: 240 ATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTY 294
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 104/248 (41%), Gaps = 40/248 (16%)
Query: 185 REIMPEFYKNSDICSLVIDNC---GRLDD----YETM--RQLLNDFN-----VYQVCL-- 228
REI P+ + + + ID C GR+ + YE M R L D +Y +C+
Sbjct: 250 REIYPDVFTFNAL----IDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYS 305
Query: 229 ----NEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEM 284
E+ FGF+ ++K VV + G C V +++F EM
Sbjct: 306 RLDEAEEMFGFM--------VSKGCFPDVVTYSILINGYCKSKKVEHGMKLFC-----EM 352
Query: 285 AKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344
++ + R Y ILI+ CR ++ M G P +TYN +L LC N
Sbjct: 353 SQ---RGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDN 409
Query: 345 GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATH 404
G+ A +L +M D +TY I I C+ G+ A++ + + +GL P + T+
Sbjct: 410 GKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTY 469
Query: 405 AAFIKGYF 412
+ G +
Sbjct: 470 TTMMLGLY 477
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 6/185 (3%)
Query: 317 DLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS 376
DL M Q P ++ +L + K + L E+M + T I +
Sbjct: 67 DLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCF 126
Query: 377 CRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDA-YKYVVLSADKYKSSS 435
CR + +A +F +M+K G +P + T + + G+ R DA Y + + YK +
Sbjct: 127 CRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNV 186
Query: 436 NMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL----HTSHQEHMAK 491
+ +++ L K+ A ++L+ M K+G+ P+V Y ++ L S M
Sbjct: 187 VIYNTIIDGLC-KSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVS 245
Query: 492 CLSSR 496
C++ R
Sbjct: 246 CMTKR 250
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN+L+ +C + +L +M++ G + +TYN ++ +CK G+ ADA ++ +
Sbjct: 399 YNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLN 458
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP 399
+ PD TY ++ + G A F +M + G+ P
Sbjct: 459 CQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDGILP 499
>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740,
mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2
SV=1
Length = 459
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 87/180 (48%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
+NILIK +CD++ + EM ++ +P +TYN ++G LC+N A LLE+M+
Sbjct: 189 FNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTYNSLIGFLCRNDDMGKAKSLLEDMI 248
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ P+A+T+ + + C G+++ A M RG +P L + + R +
Sbjct: 249 KKRIRPNAVTFGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRID 308
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+A + + ++Y++L + A VL+EM G +PN + YR ++
Sbjct: 309 EAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMI 368
Score = 67.4 bits (163), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
+ +L+K +C + ++ + L+ +M GC+P + Y ++ L K G+ +A LL EM
Sbjct: 259 FGLLMKGLCCKGEYNEAKKLMFDMEYRGCKPGLVNYGILMSDLGKRGRIDEAKLLLGEMK 318
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
R PD + Y I + + C + A+ +M +G +P AT+ I G F R E
Sbjct: 319 KRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQMKGCKPNAATYRMMIDG---FCRIE 375
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLH 446
D + S N+L ++LAS H
Sbjct: 376 D-----------FDSGLNVLNAMLASRH 392
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 54/112 (48%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y IL+ ++ +R + LL EM++ +P + YN ++ LC + +A +L EM
Sbjct: 294 YGILMSDLGKRGRIDEAKLLLGEMKKRRIKPDVVIYNILVNHLCTECRVPEAYRVLTEMQ 353
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
+ C P+A TY + I CR+ FD N N M+ P AT + G
Sbjct: 354 MKGCKPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMVAG 405
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 76/204 (37%), Gaps = 22/204 (10%)
Query: 207 RLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVL--------- 257
R DD + LL D ++ N FG L K L KG + + L
Sbjct: 233 RNDDMGKAKSLLEDMIKKRIRPNAVTFGLL-----MKGLCCKGEYNEAKKLMFDMEYRGC 287
Query: 258 --NQVGGSCLVS--GVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFK 313
V L+S G R I+ +L L EM K IK V YNIL+ +C C
Sbjct: 288 KPGLVNYGILMSDLGKRGRIDEAKLL-LGEMKKRRIKPD---VVIYNILVNHLCTECRVP 343
Query: 314 GPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFI 373
+L EM+ GC+P TY ++ C+ +L ML P T+ +
Sbjct: 344 EAYRVLTEMQMKGCKPNAATYRMMIDGFCRIEDFDSGLNVLNAMLASRHCPTPATFVCMV 403
Query: 374 VYSCRVGKFDVAFNFFNQMVKRGL 397
+ G D A M K+ L
Sbjct: 404 AGLIKGGNLDHACFVLEVMGKKNL 427
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 53/114 (46%)
Query: 380 GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLY 439
G+ + A +FF+ L+P + IKG+ +E A K + S + Y
Sbjct: 165 GELEKAKSFFDGAKDMRLRPNSVSFNILIKGFLDKCDWEAACKVFDEMLEMEVQPSVVTY 224
Query: 440 SLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCL 493
+ L +N++ AK++L +M+K +RPN + ++K L + + AK L
Sbjct: 225 NSLIGFLCRNDDMGKAKSLLEDMIKKRIRPNAVTFGLLMKGLCCKGEYNEAKKL 278
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y ++K MC D G +++ EM GC P + Y ++ +N + DA +L+EM
Sbjct: 420 YGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMK 479
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ PD Y I+ + + D A +F +MV+ GL+P T+ AFI GY +
Sbjct: 480 EQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFA 539
Query: 419 DAYKYV 424
A KYV
Sbjct: 540 SADKYV 545
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 14/218 (6%)
Query: 272 LIEMFSVLGLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVG 326
LI FS LG + A + + + V YN+L+ CR + + ++LL EM G
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692
Query: 327 CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF 386
P +TY ++ CK+G A+A L +EM + PD+ Y + CR+ + A
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAI 752
Query: 387 NFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVL------SADKYKSSSNMLYS 440
F K+G A A I F F + E K VL S D++ +++ Y+
Sbjct: 753 TIFGTN-KKGCASSTAPFNALINWVFKFGKTE--LKTEVLNRLMDGSFDRFGKPNDVTYN 809
Query: 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
++ K N AK + +M L P V Y +L
Sbjct: 810 IMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLL 847
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 93/214 (43%), Gaps = 9/214 (4%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y +LI + + + + EM + G P + YN +LG C++G+ A ELL+EM
Sbjct: 630 YGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMS 689
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ HP+A+TY I C+ G AF F++M +GL P + + G R
Sbjct: 690 VKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC---CRLN 746
Query: 419 DAYKYVVLSADKYK--SSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGL----RPNVS 472
D + + + K +SS ++ L + K + VL+ +M +PN
Sbjct: 747 DVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDV 806
Query: 473 VYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSSV 506
Y ++ +L AK L + + +L +V
Sbjct: 807 TYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTV 840
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 2/182 (1%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACE-LLEEM 357
Y++LI +C+ + + LLVEM +G TY+ ++ L K G++ADA + L+ EM
Sbjct: 280 YDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLK-GRNADAAKGLVHEM 338
Query: 358 LGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRY 417
+ + Y+ I + G + A F+ M+ GL P+ +A+ I+GY
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNV 398
Query: 418 EDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRV 477
Y+ +V + S Y + + + A N++ EM+ +G RPNV +Y +
Sbjct: 399 RQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTL 458
Query: 478 LK 479
+K
Sbjct: 459 IK 460
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 94/255 (36%), Gaps = 36/255 (14%)
Query: 280 GLYEMAKYVIKKTER-KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338
G Y + K +I R V Y LIK + F +L EM++ G P YN ++
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI 494
Query: 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIV------------------------ 374
L K + +A L EM+ P+A TY FI
Sbjct: 495 IGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVL 554
Query: 375 -----------YSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKY 423
C+ GK A + + MV +G+ T+ + G F + +DA +
Sbjct: 555 PNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEI 614
Query: 424 VVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHT 483
K + Y +L + K N A ++ EM++ GL PNV +Y +L
Sbjct: 615 FREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCR 674
Query: 484 SHQEHMAKCLSSRYS 498
S + AK L S
Sbjct: 675 SGEIEKAKELLDEMS 689
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 76/172 (44%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI+ CR + + +LLVEM++ TY V+ +C +G A +++EM+
Sbjct: 385 YASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMI 444
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
C P+ + Y I + +F A +M ++G+ P + + + I G R +
Sbjct: 445 ASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMD 504
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN 470
+A ++V + + Y S + + + A + EM + G+ PN
Sbjct: 505 EARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPN 556
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 71/176 (40%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y+ I M + + + L M G P Y ++ C+ ELL EM
Sbjct: 350 YDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMK 409
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
RN TY + C G D A+N +M+ G +P + + IK + R+
Sbjct: 410 KRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFG 469
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
DA + + ++ + Y+ L K A++ L EM++NGL+PN Y
Sbjct: 470 DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTY 525
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y I +F + EMR+ G P + ++ CK G+ +AC M+
Sbjct: 525 YGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ DA TY + + + K D A F +M +G+ P + ++ I G+ +
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQ 644
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
A ++ + + ++Y++L ++ AK +L EM GL PN Y
Sbjct: 645 KASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTY 700
Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 85/202 (42%), Gaps = 10/202 (4%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y L+ CR D + + ++ GC T +N ++ + K G+ E+L ++
Sbjct: 735 YTTLVDGCCRLNDVERAITIFGTNKK-GCASSTAPFNALINWVFKFGKTELKTEVLNRLM 793
Query: 359 G----RNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF 414
R P+ +TY I I Y C+ G + A F+QM L P + T+ + + GY
Sbjct: 794 DGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKM 853
Query: 415 YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEM-----MKNGLRP 469
R + + + +++YS++ + K A ++ +M + +G +
Sbjct: 854 GRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKL 913
Query: 470 NVSVYRRVLKHLHTSHQEHMAK 491
++S R +L + +A+
Sbjct: 914 SISTCRALLSGFAKVGEMEVAE 935
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 49/132 (37%), Gaps = 21/132 (15%)
Query: 357 MLGRNCHPDAITYEIFIVYSCRVGKF---------------------DVAFNFFNQMVKR 395
M+ RN D TY + I+ CR G D A M+ +
Sbjct: 212 MVERNVVFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICK 271
Query: 396 GLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMA 455
GL P T+ I G R EDA +V S N YSLL K N A
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331
Query: 456 KNVLSEMMKNGL 467
K ++ EM+ +G+
Sbjct: 332 KGLVHEMVSHGI 343
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 80/183 (43%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
+NIL+K +CR + LL EMR+ P +YN V+ C+ + A EL EM
Sbjct: 145 HNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMK 204
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
G C +T+ I I C+ GK D A F +M GL+ L + + I+G+ +
Sbjct: 205 GSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELD 264
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
++ S + Y+ L K A + M++ G+RPNV Y ++
Sbjct: 265 RGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLI 324
Query: 479 KHL 481
L
Sbjct: 325 DGL 327
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 10/253 (3%)
Query: 248 KGIWRVVEVLNQVGGS-CLVSGVR--ALIEMFSVLGLYEMAKYVIKKT-----ERKVSYY 299
K + + +E+ N++ GS C S V LI+ F G + A +K+ E + Y
Sbjct: 191 KELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVY 250
Query: 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLG 359
LI+ C + + L E+ + G P +TYN ++ CK GQ +A E+ E M+
Sbjct: 251 TSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIE 310
Query: 360 RNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED 419
R P+ TY I C VGK A N M+++ +P T+ I D
Sbjct: 311 RGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNIIINKLCKDGLVAD 370
Query: 420 AYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNG--LRPNVSVYRRV 477
A + V L + N+ Y++L + A +L M+K+ P+V Y +
Sbjct: 371 AVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNAL 430
Query: 478 LKHLHTSHQEHMA 490
+ L ++ H A
Sbjct: 431 IHGLCKENRLHQA 443
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 56/133 (42%)
Query: 291 KTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350
K R Y +I C+ + LL +MR +P YN +L LCK G A
Sbjct: 489 KIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQA 548
Query: 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
L EEM N PD +++ I I S + G A + M + GL P L T++ I
Sbjct: 549 WRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINR 608
Query: 411 YFIFYRYEDAYKY 423
+ ++A +
Sbjct: 609 FLKLGYLDEAISF 621
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 252 RVVEVLNQVGGSCLV---SGVRALIEMFSVLGLYEMAKYV-----IKKTERKVSYYNILI 303
+ +E+ Q+ S +V A+I+ F G+ +AK + + + + V YN L+
Sbjct: 477 KAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLL 536
Query: 304 KEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCH 363
+C+ L EM++ P +++N ++ K G A LL M
Sbjct: 537 SSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLS 596
Query: 364 PDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP 399
PD TY I ++G D A +FF++MV G +P
Sbjct: 597 PDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEP 632
Score = 40.8 bits (94), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVG--CEPITLTYNYVLGVLCKNG---QDADACEL 353
YNIL+ +C + D LL M + +P ++YN ++ LCK Q D +L
Sbjct: 390 YNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDL 449
Query: 354 LEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411
L E LG D +T I + + + G + A + Q+ + T+ A I G+
Sbjct: 450 LVEKLGAG---DRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGF 504
Score = 37.7 bits (86), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V +NI+I + D K LLV M + G P TY+ ++ K G +A +
Sbjct: 564 VVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFD 623
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL 397
+M+ PDA + + Y G+ D ++V + +
Sbjct: 624 KMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDI 665
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 1/192 (0%)
Query: 291 KTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350
K E V YN +I +C+ DL +M G +P TYN ++ LC G+ +DA
Sbjct: 245 KIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDA 304
Query: 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK-RGLQPRLATHAAFIK 409
LL +ML +N +PD + + I + GK A +++MVK + P + + IK
Sbjct: 305 SRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIK 364
Query: 410 GYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP 469
G+ + R E+ + + + + + Y+ L + + A+ V +M+ +G+ P
Sbjct: 365 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHP 424
Query: 470 NVSVYRRVLKHL 481
++ Y +L L
Sbjct: 425 DIMTYNILLDGL 436
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 1/163 (0%)
Query: 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377
L+ M GC+P +TY V+ LCK G+ A LL +M D + Y I C
Sbjct: 202 LVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLC 261
Query: 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437
+ D AF+ FN+M +G++P + T+ I + R+ DA + + +K + +
Sbjct: 262 KYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLV 321
Query: 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNG-LRPNVSVYRRVLK 479
++ L K V A+ + EM+K+ P+V Y ++K
Sbjct: 322 FFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIK 364
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 77/184 (41%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI + D + + +M G P +TYN +L LC NG A + E M
Sbjct: 394 YTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQ 453
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
R+ D +TY I C+ GK + ++ F + +G++P + T+ + G+ E
Sbjct: 454 KRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKE 513
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+A V + ++ Y+ L ++ + + ++ EM G + S + V
Sbjct: 514 EADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVT 573
Query: 479 KHLH 482
LH
Sbjct: 574 NMLH 577
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 78/161 (48%)
Query: 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377
L+ +M ++G +P T+T+ ++ L ++ + ++A L+E M+ + C PD +TY I C
Sbjct: 167 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLC 226
Query: 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437
+ G+ D+A N N+M K ++ + + I G + +DA+ K
Sbjct: 227 KRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVF 286
Query: 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
Y+ L S A +LS+M++ + P++ + ++
Sbjct: 287 TYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALI 327
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 8/216 (3%)
Query: 271 ALIEMFSVLG-LYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQ 324
ALI+ F G L E K + + K V YN LIK C+ + ++ EM Q
Sbjct: 325 ALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQ 384
Query: 325 VGCEPITLTYNYVLGVLCKNGQDADACELL-EEMLGRNCHPDAITYEIFIVYSCRVGKFD 383
G T+TY ++ + +D D +++ ++M+ HPD +TY I + C G +
Sbjct: 385 RGLVGNTVTYTTLIHGFFQ-ARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVE 443
Query: 384 VAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLA 443
A F M KR ++ + T+ I+ + ED + + K + + Y+ +
Sbjct: 444 TALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 503
Query: 444 SLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLK 479
S + A + EM ++G PN Y +++
Sbjct: 504 SGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIR 539
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 35/183 (19%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y+I I CRR +L +M ++G P +T N +L C + ++A L+++M+
Sbjct: 113 YSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 172
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
PD +T+ + + K A +MV +G QP L T+ A I G
Sbjct: 173 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLC------ 226
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
K P +A N+L++M K + +V +Y ++
Sbjct: 227 -----------------------------KRGEPDLALNLLNKMEKGKIEADVVIYNTII 257
Query: 479 KHL 481
L
Sbjct: 258 DGL 260
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 1/194 (0%)
Query: 286 KYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG 345
+ V+K + + Y +I +C+R + +LL +M + E + YN ++ LCK
Sbjct: 205 RMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYK 264
Query: 346 QDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHA 405
DA +L +M + PD TY I C G++ A + M+++ + P L
Sbjct: 265 HMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFN 324
Query: 406 AFIKGYFIFYRYEDAYK-YVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464
A I + + +A K Y + K+ + Y+ L K V EM +
Sbjct: 325 ALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQ 384
Query: 465 NGLRPNVSVYRRVL 478
GL N Y ++
Sbjct: 385 RGLVGNTVTYTTLI 398
Score = 41.6 bits (96), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 66/162 (40%)
Query: 329 PITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNF 388
P + ++ +L + K + L E+M + TY IFI Y CR + +A
Sbjct: 73 PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132
Query: 389 FNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDK 448
+M+K G P + T + + G+ R +A V + + ++ L +
Sbjct: 133 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 192
Query: 449 NNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMA 490
+N A ++ M+ G +P++ Y V+ L + +A
Sbjct: 193 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 234
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 91/192 (47%), Gaps = 5/192 (2%)
Query: 289 IKKTERKVSYYNILIKEMC--RRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ 346
+K R Y LI +C RR D DL V+M+ C P TY ++ LC + +
Sbjct: 281 LKGCRRNEVAYTHLIHGLCVARRID--EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSER 338
Query: 347 DADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAA 406
++A L++EM P+ TY + I C KF+ A QM+++GL P + T+ A
Sbjct: 339 KSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNA 398
Query: 407 FIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNG 466
I GY EDA V L + S + Y+ L + K+N A VL++M++
Sbjct: 399 LINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVH-KAMGVLNKMLERK 457
Query: 467 LRPNVSVYRRVL 478
+ P+V Y ++
Sbjct: 458 VLPDVVTYNSLI 469
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 101/258 (39%), Gaps = 37/258 (14%)
Query: 283 EMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLC 342
EM + IK + Y +LI +C +C F+ R+LL +M + G P +TYN ++ C
Sbjct: 348 EMEETGIKPN---IHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYC 404
Query: 343 KNGQDADACELLE----------------------------------EMLGRNCHPDAIT 368
K G DA +++E +ML R PD +T
Sbjct: 405 KRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVT 464
Query: 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSA 428
Y I CR G FD A+ + M RGL P T+ + I R E+A
Sbjct: 465 YNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLE 524
Query: 429 DKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEH 488
K + + ++Y+ L + K A +L +M+ PN + ++ L +
Sbjct: 525 QKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLK 584
Query: 489 MAKCLSSRYSSLSLGSSV 506
A L + + L +V
Sbjct: 585 EATLLEEKMVKIGLQPTV 602
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 90/182 (49%), Gaps = 2/182 (1%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y +I +C+ + DL + Q G P + Y ++ CK G+ +A +LE+ML
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+NC P+++T+ I C GK A +MVK GLQP ++T I ++
Sbjct: 560 SKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFD 619
Query: 419 DAY-KYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRV 477
AY ++ + + K ++ Y+ + + + A++++++M +NG+ P++ Y +
Sbjct: 620 HAYSRFQQMLSSGTKPDAHT-YTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSL 678
Query: 478 LK 479
+K
Sbjct: 679 IK 680
Score = 69.7 bits (169), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 79/186 (42%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V Y LI C+ +L +M C P +LT+N ++ LC +G+ +A L E
Sbjct: 532 VVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEE 591
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+M+ P T I I + G FD A++ F QM+ G +P T+ FI+ Y
Sbjct: 592 KMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREG 651
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
R DA + + S YS L + A +VL M G P+ +
Sbjct: 652 RLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFL 711
Query: 476 RVLKHL 481
++KHL
Sbjct: 712 SLIKHL 717
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 80/186 (43%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
+ YN L+ + R + + +EM + P TYN ++ CK G +A + +
Sbjct: 183 IGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVS 242
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+++ PD TY I+ C+ D AF FN+M +G + + I G +
Sbjct: 243 KIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVAR 302
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
R ++A V D + Y++L + A N++ EM + G++PN+ Y
Sbjct: 303 RIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYT 362
Query: 476 RVLKHL 481
++ L
Sbjct: 363 VLIDSL 368
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 55/127 (43%), Gaps = 19/127 (14%)
Query: 317 DLLVEMRQVGCEPITLTYNYVLGVLC------KNGQDADAC------------ELLEEML 358
D+L MR GCEP T+ ++ L + G + + C ELLE+M+
Sbjct: 693 DVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMV 752
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK-RGLQPRLATHAAFIKGYFIFYRY 417
+ P+A +YE I+ C VG VA F+ M + G+ P A + ++
Sbjct: 753 EHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKH 812
Query: 418 EDAYKYV 424
+A K V
Sbjct: 813 NEAAKVV 819
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 76.6 bits (187), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 106/240 (44%), Gaps = 20/240 (8%)
Query: 252 RVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTER-----KVSYYNILIKEM 306
R+ E G V ALI + GL+E A V + + YN +I +
Sbjct: 254 RIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEYGLRPNLVTYNAVI-DA 312
Query: 307 CRR--CDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHP 364
C + +FK EM++ G +P +T+N +L V + G A L +EM R
Sbjct: 313 CGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQ 372
Query: 365 DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDA---- 420
D +Y + C+ G+ D+AF QM + + P + +++ I G+ R+++A
Sbjct: 373 DVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLF 432
Query: 421 --YKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+Y+ ++ D+ Y+ L S++ K A ++L EM G++ +V Y +L
Sbjct: 433 GEMRYLGIALDRVS------YNTLLSIYTKVGRSEEALDILREMASVGIKKDVVTYNALL 486
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 12/201 (5%)
Query: 284 MAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK 343
+A+ +K+ V Y+ +I + F +L EMR +G ++YN +L + K
Sbjct: 397 LAQMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTK 456
Query: 344 NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT 403
G+ +A ++L EM D +TY + + GK+D F +M + + P L T
Sbjct: 457 VGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLT 516
Query: 404 HAAFIKGYFIFYRYEDA------YKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKN 457
++ I GY Y++A +K L AD +LYS L KN A +
Sbjct: 517 YSTLIDGYSKGGLYKEAMEIFREFKSAGLRADV------VLYSALIDALCKNGLVGSAVS 570
Query: 458 VLSEMMKNGLRPNVSVYRRVL 478
++ EM K G+ PNV Y ++
Sbjct: 571 LIDEMTKEGISPNVVTYNSII 591
Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 281 LYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGV 340
L EMA IKK V YN L+ ++ + + + EM++ P LTY+ ++
Sbjct: 467 LREMASVGIKK---DVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDG 523
Query: 341 LCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR 400
K G +A E+ E D + Y I C+ G A + ++M K G+ P
Sbjct: 524 YSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPN 583
Query: 401 LATHAAFIKGY 411
+ T+ + I +
Sbjct: 584 VVTYNSIIDAF 594
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 87/212 (41%), Gaps = 10/212 (4%)
Query: 184 MREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSK 243
++ IMP N S VID + ++ L + + L+ ++ L + +
Sbjct: 402 VKRIMP----NVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKV 457
Query: 244 ALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERK-----VSY 298
+++ + ++ + VG V AL+ + G Y+ K V + +R+ +
Sbjct: 458 GRSEEAL-DILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLT 516
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y+ LI + +K ++ E + G + Y+ ++ LCKNG A L++EM
Sbjct: 517 YSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMT 576
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFN 390
P+ +TY I R D + ++ N
Sbjct: 577 KEGISPNVVTYNSIIDAFGRSATMDRSADYSN 608
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 61/122 (50%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y L+ +CR+ + LL M+ GC P + YN ++ C+ + DA ++L++ML
Sbjct: 263 YTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDML 322
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
C P++++Y I C G FD + +M+ +G P + +KG+ F + E
Sbjct: 323 SNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVE 382
Query: 419 DA 420
+A
Sbjct: 383 EA 384
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 75/165 (45%)
Query: 317 DLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS 376
+L R G P T +YN ++ C N + A +L +ML R+ PD +Y+I I
Sbjct: 176 ELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGF 235
Query: 377 CRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN 436
CR G+ + A + M+ +G P ++ + + +AYK + K +
Sbjct: 236 CRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDL 295
Query: 437 MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
+ Y+ + + + + A+ VL +M+ NG PN YR ++ L
Sbjct: 296 VHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGL 340
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 77/176 (43%), Gaps = 2/176 (1%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN+L++ C D L +M + P +Y ++ C+ GQ A ELL++ML
Sbjct: 193 YNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDML 252
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ PD ++Y + CR + A+ +M +G P L + I G+ R
Sbjct: 253 NKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAM 312
Query: 419 DAYKYVVLSADKYKSSSNMLY-SLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSV 473
DA K + S +++ Y +L+ L D+ K L EM+ G P+ SV
Sbjct: 313 DARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFD-EGKKYLEEMISKGFSPHFSV 367
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%)
Query: 298 YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEM 357
+YN +I CR R +L +M GC P +++Y ++G LC G + + LEEM
Sbjct: 297 HYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEM 356
Query: 358 LGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG 396
+ + P + C GK + A + ++K G
Sbjct: 357 ISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNG 395
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 76.3 bits (186), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/224 (28%), Positives = 100/224 (44%), Gaps = 20/224 (8%)
Query: 302 LIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRN 361
LI +C+ +L + G T T N +L LC+ G+ +A + +E+LGR
Sbjct: 489 LISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRG 548
Query: 362 CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421
C D ++Y I C K D AF F ++MVKRGL+P T++ I G F + E+A
Sbjct: 549 CVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAI 608
Query: 422 KYVVLSADKYKSSSNM----LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRV 477
++ D K + + YS++ K + EMM ++PN VY +
Sbjct: 609 QF----WDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHL 664
Query: 478 LKHLHTSHQEHMAKCL------------SSRYSSLSLGSSVEAR 509
++ S + MA L S+ Y+SL G S+ +R
Sbjct: 665 IRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISR 708
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 85/183 (46%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V Y+++I C+ + ++ EM +P T+ YN+++ C++G+ + A EL E
Sbjct: 623 VYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRE 682
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+M + P++ TY I + + + A F +M GL+P + + A I GY
Sbjct: 683 DMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG 742
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ + K + + Y+++ + ++ N A +L+EM + G+ P+ Y+
Sbjct: 743 QMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYK 802
Query: 476 RVL 478
+
Sbjct: 803 EFI 805
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 51/114 (44%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LIK M + + L EMR G EP Y ++ K GQ LL EM
Sbjct: 696 YTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMH 755
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412
+N HP+ ITY + I R G A N+M ++G+ P T+ FI GY
Sbjct: 756 SKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYL 809
Score = 59.3 bits (142), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%)
Query: 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLG 359
N L+ +C + E+ GC ++YN ++ C + +A L+EM+
Sbjct: 522 NALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVK 581
Query: 360 RNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED 419
R PD TY I I + K + A F++ + G+ P + T++ I G R E+
Sbjct: 582 RGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEE 641
Query: 420 AYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLK 479
++ K + ++Y+ L + ++ MA + +M G+ PN + Y ++K
Sbjct: 642 GQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIK 701
Query: 480 HLHTSHQEHMAKCL 493
+ + AK L
Sbjct: 702 GMSIISRVEEAKLL 715
Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 74/332 (22%), Positives = 126/332 (37%), Gaps = 29/332 (8%)
Query: 152 LSMSVSLSNASVIEILRVLNSEKVSALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDY 211
L + +L +A+ + ++R++N C L+ R + + + +C D
Sbjct: 148 LLLDANLLSAARVVLIRLINGNVPVLPCGLRDSRVAIADAMASLSLC---------FD-- 196
Query: 212 ETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRA 271
E +R+ ++D + C K G L L KG++ N + L S VRA
Sbjct: 197 EEIRRKMSDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNIL----LTSLVRA 252
Query: 272 -----LIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVG 326
E F V V K V + I C+ + L +M + G
Sbjct: 253 NEFQKCCEAFDV---------VCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAG 303
Query: 327 CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF 386
P +T+N V+ L G+ +A E+M+ R P ITY I + R + A+
Sbjct: 304 VAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAY 363
Query: 387 NFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLH 446
+M K+G P + + I + A + L K S ++ Y+ L +
Sbjct: 364 FVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGY 423
Query: 447 DKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
KN A+ +L EM+ G N + V+
Sbjct: 424 CKNGQADNAERLLKEMLSIGFNVNQGSFTSVI 455
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 77/195 (39%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN LI C + L EM + G +P TY+ ++ L + +A + ++
Sbjct: 556 YNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCK 615
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
PD TY + I C+ + + FF++M+ + +QP + I+ Y R
Sbjct: 616 RNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLS 675
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
A + K S ++ Y+ L + AK + EM GL PNV Y ++
Sbjct: 676 MALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALI 735
Query: 479 KHLHTSHQEHMAKCL 493
Q +CL
Sbjct: 736 DGYGKLGQMVKVECL 750
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 90/233 (38%), Gaps = 9/233 (3%)
Query: 243 KALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT-ERKVSYYNI 301
K +TKKG V V N + + + IE S+ E+ ++ K S YN
Sbjct: 367 KEMTKKGFPPNVIVYNNL--------IDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNT 418
Query: 302 LIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRN 361
LIK C+ LL EM +G ++ V+ +LC + A + EML RN
Sbjct: 419 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 478
Query: 362 CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421
P I C+ GK A + Q + +G T A + G + ++A+
Sbjct: 479 MSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAF 538
Query: 422 KYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+ + + Y+ L S A L EM+K GL+P+ Y
Sbjct: 539 RIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTY 591
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 70/194 (36%), Gaps = 40/194 (20%)
Query: 257 LNQVGGSCLVSGVRALIEMFSVLGLYEMA-----KYVIKKTERKVSYYNILIKEMCRRCD 311
+ + G + V +I+ + G Y+ A K V + E + Y+IL+K + R
Sbjct: 299 MEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKR 358
Query: 312 FKGPRDLLVEMRQVGCEPITL-----------------------------------TYNY 336
+L EM + G P + TYN
Sbjct: 359 IGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNT 418
Query: 337 VLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG 396
++ CKNGQ +A LL+EML + + ++ I C FD A F +M+ R
Sbjct: 419 LIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRN 478
Query: 397 LQPRLATHAAFIKG 410
+ P I G
Sbjct: 479 MSPGGGLLTTLISG 492
>sp|Q9FKR3|PP404_ARATH Pentatricopeptide repeat-containing protein At5g38730
OS=Arabidopsis thaliana GN=At5g38730 PE=2 SV=1
Length = 596
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 2/196 (1%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI CR D L M G P +TYN +L LC++G+ +A LL EM
Sbjct: 310 YTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREANRLLTEMS 369
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
G+ PD IT I C++ A +M++ GL+ + ++ A I G+ E
Sbjct: 370 GKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLDMYSYKALIHGFCKVLELE 429
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLA-SLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRV 477
+A + + +K S YS L +++N + K +L E K GL +V++YR +
Sbjct: 430 NAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQDEITK-LLEEFEKRGLCADVALYRGL 488
Query: 478 LKHLHTSHQEHMAKCL 493
++ + Q AK L
Sbjct: 489 IRRICKLEQVDYAKVL 504
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL-GVLCKNGQDADACELLEEM 357
Y LI C+ + + ++ L M + G P TY++++ G +N QD + +LLEE
Sbjct: 415 YKALIHGFCKVLELENAKEELFSMIEKGFSPGYATYSWLVDGFYNQNKQD-EITKLLEEF 473
Query: 358 LGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL 397
R D Y I C++ + D A F M K+GL
Sbjct: 474 EKRGLCADVALYRGLIRRICKLEQVDYAKVLFESMEKKGL 513
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 8/169 (4%)
Query: 262 GSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVE 321
G CLV+ + + FS++ L + Y E V YN LI +C+ + +LL E
Sbjct: 150 GFCLVNRIG---DAFSLVILMVKSGY-----EPNVVVYNTLIDGLCKNGELNIALELLNE 201
Query: 322 MRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK 381
M + G +TYN +L LC +G+ +DA +L +M+ R+ +PD +T+ I + G
Sbjct: 202 MEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGN 261
Query: 382 FDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK 430
D A + +M++ + P T+ + I G + R DA K L A K
Sbjct: 262 LDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASK 310
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 11/208 (5%)
Query: 282 YEMAKYVIKKTE-----RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNY 336
YE Y +K E + + ILI CR +L +M ++G EP +T+
Sbjct: 87 YETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGS 146
Query: 337 VLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG 396
+L C + DA L+ M+ P+ + Y I C+ G+ ++A N+M K+G
Sbjct: 147 LLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKG 206
Query: 397 LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN---MLYSLLASLHDKNNNPV 453
L + T+ + G R+ DA + + D K S N + ++ L + K N
Sbjct: 207 LGADVVTYNTLLTGLCYSGRWSDAARML---RDMMKRSINPDVVTFTALIDVFVKQGNLD 263
Query: 454 MAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
A+ + EM+++ + PN Y ++ L
Sbjct: 264 EAQELYKEMIQSSVDPNNVTYNSIINGL 291
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 271 ALIEMFSVLGLYEMAKYVIKK-----TERKVSYYNILIKEMC---RRCDFKGPRDLLVEM 322
ALI++F G + A+ + K+ + YN +I +C R D K DL M
Sbjct: 251 ALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDL---M 307
Query: 323 RQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKF 382
GC P +TYN ++ CK + +L + M + D TY I C+VGK
Sbjct: 308 ASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKL 367
Query: 383 DVAFNFFNQMVKRGLQPRLATHAAFIKG 410
VA + F MV R + P + TH + G
Sbjct: 368 RVALDIFCWMVSRRVTPDIITHCILLHG 395
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 52/116 (44%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V + LI ++ + ++L EM Q +P +TYN ++ LC +G+ DA + +
Sbjct: 246 VVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFD 305
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411
M + C P+ +TY I C+ D F +M G + T+ I GY
Sbjct: 306 LMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGY 361
Score = 41.2 bits (95), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 47/112 (41%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN LI C+ + D+ M P +T+ +L LC NG+ A ++M
Sbjct: 354 YNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMR 413
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
+ + Y I I C+ K + A+ F ++ G++P T+ I G
Sbjct: 414 ESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILG 465
Score = 35.8 bits (81), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEM 357
YNI+I +C+ + +L + G +P TY ++ LCKNG +A EL+ M
Sbjct: 424 YNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRM 482
Score = 35.4 bits (80), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
Query: 260 VGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLL 319
+ G C V +R +++F + V ++ + + IL+ +C + +
Sbjct: 358 IHGYCQVGKLRVALDIFCWM--------VSRRVTPDIITHCILLHGLCVNGEIESALVKF 409
Query: 320 VEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRV 379
+MR+ + YN ++ LCK + A EL + PDA TY I I+ C+
Sbjct: 410 DDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKN 469
Query: 380 GKFDVAFNFFNQMVKRGL 397
G A +M + G+
Sbjct: 470 GPRREADELIRRMKEEGI 487
>sp|Q9FRS4|PPR22_ARATH Pentatricopeptide repeat-containing protein At1g08610
OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1
Length = 559
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 82/184 (44%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V YNILI +C+ D +M + C P +TYN VLG + K G DA ELL
Sbjct: 349 VITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDDAIELLG 408
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+ C P ITY I + G A ++QM+ G+ P T + I G+
Sbjct: 409 LLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLIYGFCRAN 468
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
E+A + + ++++ Y L+ K MA V+ M+ G +P+ ++Y
Sbjct: 469 LVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVVEIMLTGGCKPDETIYT 528
Query: 476 RVLK 479
++K
Sbjct: 529 AIVK 532
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 102/249 (40%), Gaps = 13/249 (5%)
Query: 230 EKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVI 289
+KA L V++ S + + ++ +G C +R + + + L VI
Sbjct: 156 DKAMCILRVMVMSGGVPDTITYNMI-----IGNLCKKGHIRTALVLLEDMSLSGSPPDVI 210
Query: 290 KKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDAD 349
YN +I+ M + + + Q GC P +TY ++ ++C+ A
Sbjct: 211 T--------YNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSAR 262
Query: 350 ACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIK 409
A E+LE+M C+PD +TY + Y+CR G + + ++ GL+ T+ +
Sbjct: 263 AIEVLEDMAVEGCYPDIVTYNSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLH 322
Query: 410 GYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP 469
+++ + + + + + Y++L + K A + +M++ P
Sbjct: 323 SLCSHEYWDEVEEILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLP 382
Query: 470 NVSVYRRVL 478
++ Y VL
Sbjct: 383 DIVTYNTVL 391
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 71/201 (35%), Gaps = 42/201 (20%)
Query: 322 MRQVGCE---PITL----TYNYVLGVLCKNGQDADACELLEEMLGRN-------CH---- 363
M+Q G PIT T N +L LC NG+ DAC+L+E M N C
Sbjct: 88 MKQFGLSSDGPITENDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVR 147
Query: 364 ------------------------PDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP 399
PD ITY + I C+ G A M G P
Sbjct: 148 GLARIDQLDKAMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPP 207
Query: 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVL 459
+ T+ I+ F + E A ++ + Y++L L + A VL
Sbjct: 208 DVITYNTVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVL 267
Query: 460 SEMMKNGLRPNVSVYRRVLKH 480
+M G P++ Y ++ +
Sbjct: 268 EDMAVEGCYPDIVTYNSLVNY 288
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 35/147 (23%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN ++ M + +LL ++ C P +TYN V+ L K G A EL +ML
Sbjct: 387 YNTVLGAMSKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQML 446
Query: 359 GRNCHPDAIT-----------------------------------YEIFIVYSCRVGKFD 383
PD IT Y + I C+ + +
Sbjct: 447 DAGIFPDDITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIE 506
Query: 384 VAFNFFNQMVKRGLQPRLATHAAFIKG 410
+A M+ G +P + A +KG
Sbjct: 507 MAIEVVEIMLTGGCKPDETIYTAIVKG 533
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 85/191 (44%), Gaps = 8/191 (4%)
Query: 293 ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACE 352
E V Y L++ CR + + EM+ G EP TY+ V+ LC+ GQ + A +
Sbjct: 252 EPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHD 311
Query: 353 LLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412
+ +ML C P+AIT+ + + G+ + +NQM K G +P T+ I+ +
Sbjct: 312 VFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHC 371
Query: 413 IFYRYEDAYKYVVLSADKY----KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLR 468
E+A K + K S+ N ++ + D N A + S+MM+
Sbjct: 372 RDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNG----AHRMYSKMMEAKCE 427
Query: 469 PNVSVYRRVLK 479
PN Y +++
Sbjct: 428 PNTVTYNILMR 438
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 59/116 (50%), Gaps = 1/116 (0%)
Query: 288 VIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQD 347
+ KK E S +N + + + ++ D G + +M + CEP T+TYN ++ + +
Sbjct: 387 IKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKST 446
Query: 348 ADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV-KRGLQPRLA 402
++ +EM + P+ TY + + C +G ++ A+ F +MV ++ L P L+
Sbjct: 447 DMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWNNAYKLFKEMVEEKCLTPSLS 502
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 75/174 (43%), Gaps = 3/174 (1%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN LI+ CR + + +L M + CE T+N + + K A + +M+
Sbjct: 363 YNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMM 422
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
C P+ +TY I + D+ +M + ++P + T+ + + +
Sbjct: 423 EAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYRLLVTMFCGMGHWN 482
Query: 419 DAYK-YVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGL--RP 469
+AYK + + +K + S LY ++ + + + ++ +M++ GL RP
Sbjct: 483 NAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAGQLKKHEELVEKMIQKGLVARP 536
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 1/148 (0%)
Query: 334 YNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393
YN ++ + K Q A L++ M RN T+ I I R G A + FN+M
Sbjct: 154 YNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRME 213
Query: 394 KRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPV 453
G P + I R +A + D+++ ++Y+ L +
Sbjct: 214 DYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDV-IVYTNLVRGWCRAGEIS 272
Query: 454 MAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
A+ V EM G+ PNV Y V+ L
Sbjct: 273 EAEKVFKEMKLAGIEPNVYTYSIVIDAL 300
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 93/208 (44%), Gaps = 5/208 (2%)
Query: 272 LIEMFSVLGLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVG 326
LI F LG E A+ + K + K V YNILI R+ +F D+L EM G
Sbjct: 430 LIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNG 489
Query: 327 CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF 386
P ++Y ++ LCK + +A + +M R P Y + I C GK + AF
Sbjct: 490 TMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAF 549
Query: 387 NFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLH 446
F +M+K+G++ L T+ I G + + +A ++ + K Y+ L S +
Sbjct: 550 RFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGY 609
Query: 447 DKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
N + EM ++G++P + Y
Sbjct: 610 GFAGNVQRCIALYEEMKRSGIKPTLKTY 637
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 2/202 (0%)
Query: 277 SVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNY 336
+ LG+YE A V + +IL+ +C+ + ++L G P + YN
Sbjct: 337 AALGVYETA--VDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNT 394
Query: 337 VLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG 396
++ C+ G A +E M + PD + Y I C +G+ + A N+M +G
Sbjct: 395 MIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKG 454
Query: 397 LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAK 456
+ P + T+ I GY Y ++ + + D + + Y L + K + + A+
Sbjct: 455 VSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQ 514
Query: 457 NVLSEMMKNGLRPNVSVYRRVL 478
V +M G+ P V +Y ++
Sbjct: 515 IVKRDMEDRGVSPKVRIYNMLI 536
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 70/183 (38%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V YN+LI +C+ L EM P +TYN ++ CK G + ++ E
Sbjct: 214 VFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRE 273
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
M + P IT+ + + G + A N +M G P T + GY
Sbjct: 274 RMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNE 333
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
+ E A + D + S+L + K A+ +L M GL PN +Y
Sbjct: 334 KAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYN 393
Query: 476 RVL 478
++
Sbjct: 394 TMI 396
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 35/211 (16%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYV-------------LGV----- 340
+N L+K + + + ++L EM+ +G P T++ + LGV
Sbjct: 287 FNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAV 346
Query: 341 -----------------LCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFD 383
LCK G+ A E+L + + P+ + Y I CR G
Sbjct: 347 DSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLV 406
Query: 384 VAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLA 443
A M K+G++P + I+ + E+A K V K S S Y++L
Sbjct: 407 GARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILI 466
Query: 444 SLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+ + ++L EM NG PNV Y
Sbjct: 467 GGYGRKYEFDKCFDILKEMEDNGTMPNVVSY 497
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/302 (21%), Positives = 113/302 (37%), Gaps = 23/302 (7%)
Query: 190 EFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKG 249
EF K DI + DN G + + + L+N CL K L I + + +G
Sbjct: 474 EFDKCFDILKEMEDN-GTMPNVVSYGTLIN-------CLC-KGSKLLEAQIVKRDMEDRG 524
Query: 250 IWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKK-TERKVSYYNILIKEMCR 308
+ V + N + C G + + +K ++KK E + YN LI +
Sbjct: 525 VSPKVRIYNMLIDGCCSKG--------KIEDAFRFSKEMLKKGIELNLVTYNTLIDGLSM 576
Query: 309 RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAIT 368
DLL+E+ + G +P TYN ++ G L EEM P T
Sbjct: 577 TGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKT 636
Query: 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSA 428
Y + I + G ++ F +M L+P L + + Y + E A+
Sbjct: 637 YHLLISLCTKEG-IELTERLFGEM---SLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMI 692
Query: 429 DKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEH 488
+K Y+ L K ++++ EM + P Y ++K H +++
Sbjct: 693 EKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKG-HCEVKDY 751
Query: 489 MA 490
M+
Sbjct: 752 MS 753
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 8/146 (5%)
Query: 279 LGLYE-MAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYV 337
+ LYE M + IK T + Y++LI +C + + L EM +P L YN V
Sbjct: 619 IALYEEMKRSGIKPT---LKTYHLLIS-LCTKEGIELTERLFGEM---SLKPDLLVYNGV 671
Query: 338 LGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL 397
L +G A L ++M+ ++ D TY I+ +VGK + ++M R +
Sbjct: 672 LHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREM 731
Query: 398 QPRLATHAAFIKGYFIFYRYEDAYKY 423
+P T+ +KG+ Y AY +
Sbjct: 732 EPEADTYNIIVKGHCEVKDYMSAYVW 757
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 333 TYN-YVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQ 391
TYN +LG L K G+ + L++EM R P+A TY I + C V + A+ ++ +
Sbjct: 702 TYNSLILGQL-KVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVKDYMSAYVWYRE 760
Query: 392 MVKRGLQPRLATHAAFIKGYFIFYRYEDA 420
M ++G + + G +R ++A
Sbjct: 761 MQEKGFLLDVCIGNELVSGLKEEWRSKEA 789
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 75/153 (49%)
Query: 327 CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF 386
C P +TY+ +L LCK G+ A+A L EM+G PD++ Y IFI + C+ GK AF
Sbjct: 520 CLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAF 579
Query: 387 NFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLH 446
M K+G L T+ + I G I + + + + +K S + Y+
Sbjct: 580 RVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYL 639
Query: 447 DKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLK 479
+ A N+L EMM+ + PNV ++ +++
Sbjct: 640 CEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIE 672
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Query: 272 LIEMFSVLGLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVG 326
+++ F +GL E AK + + + YNI ++ + R F +L +M G
Sbjct: 297 MLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKG 356
Query: 327 CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF 386
P +YN ++ LCK G +DA ++ M PDA+TY + C VGK D A
Sbjct: 357 IGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAK 416
Query: 387 NFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDA 420
+ +M++ P T + + R +A
Sbjct: 417 SLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEA 450
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
+N+LI+ +C R+L EM + GC+P T+ ++ CK G ELL M
Sbjct: 150 FNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAME 209
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT 403
P+ + Y + CR G+ D + +M + GL P + T
Sbjct: 210 SFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVT 254
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 272 LIEMFSVLGLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVG 326
I F G A V+K E+K + YN LI + + L+ EM++ G
Sbjct: 565 FIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKG 624
Query: 327 CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF 386
P TYN + LC+ + DA LL+EM+ +N P+ +++ I C+V FD+A
Sbjct: 625 ISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQ 684
Query: 387 NFFNQMV 393
F V
Sbjct: 685 EVFETAV 691
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 3/198 (1%)
Query: 285 AKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYN-YVLGVLCK 343
A+ + +K + YNI I C++ +L +M + GC TYN +LG+ K
Sbjct: 548 AEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIK 607
Query: 344 NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT 403
N Q + L++EM + P+ TY I Y C K + A N ++M+++ + P + +
Sbjct: 608 N-QIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFS 666
Query: 404 HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463
I+ + + D + V +A LYSL+ + + A +L ++
Sbjct: 667 FKYLIEAFCKVPDF-DMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVL 725
Query: 464 KNGLRPNVSVYRRVLKHL 481
G +Y+ +++ L
Sbjct: 726 DRGFELGTFLYKDLVESL 743
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 64/146 (43%), Gaps = 6/146 (4%)
Query: 282 YEMAKYVIKKTERKVSYYNILIKEMC---RRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338
+++ + + + V YN+L+ E C RR +F L +M G P T T+N ++
Sbjct: 98 FQLVRSRFPENKPSVYLYNLLL-ESCIKERRVEFVSW--LYKDMVLCGIAPQTYTFNLLI 154
Query: 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQ 398
LC + A EL +EM + C P+ T+ I + C+ G D N M G+
Sbjct: 155 RALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFGVL 214
Query: 399 PRLATHAAFIKGYFIFYRYEDAYKYV 424
P + + + R +D+ K V
Sbjct: 215 PNKVIYNTIVSSFCREGRNDDSEKMV 240
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 92/230 (40%), Gaps = 28/230 (12%)
Query: 280 GLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY 334
G + A+ V+K+ K + YNIL+ +C+ + ++ M++ G P +TY
Sbjct: 340 GKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTY 399
Query: 335 NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK 394
+L C G+ A LL+EM+ NC P+A T I + ++G+ A +M +
Sbjct: 400 GCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNE 459
Query: 395 RGLQPRLATHAAFIKGYFIFYRYEDAYK-------------------YVVLSADKYKSSS 435
+G T + G + A + Y+ L D ++
Sbjct: 460 KGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENN 519
Query: 436 NM----LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
+ YS L + K AKN+ +EMM L+P+ Y + H
Sbjct: 520 CLPDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHF 569
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 58/143 (40%)
Query: 329 PITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNF 388
P ++TYN +L CK G DA L E + + +Y I++ R GKF A
Sbjct: 289 PNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETV 348
Query: 389 FNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDK 448
QM +G+ P + ++ + G DA V L + Y L +
Sbjct: 349 LKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCS 408
Query: 449 NNNPVMAKNVLSEMMKNGLRPNV 471
AK++L EMM+N PN
Sbjct: 409 VGKVDAAKSLLQEMMRNNCLPNA 431
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 74.7 bits (182), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 82/186 (44%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V +N LI+ +C + + +L EMR GCEP TYN ++ LC G+ +A +L+
Sbjct: 400 VCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLK 459
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+M C ITY I C+ K A F++M G+ T+ I G
Sbjct: 460 QMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSR 519
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
R EDA + + + + Y+ L + + + A +++ M NG P++ Y
Sbjct: 520 RVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYG 579
Query: 476 RVLKHL 481
++ L
Sbjct: 580 TLISGL 585
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 92/201 (45%), Gaps = 9/201 (4%)
Query: 217 LLNDFNVYQVCLNEKAFG-FLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEM 275
+L D Y + +EK F + I L G R+ E + + G S V ++
Sbjct: 211 MLEDMPSYGLVPDEKTFTTVMQGYIEEGDL--DGALRIREQMVEFGCSWSNVSVNVIVHG 268
Query: 276 FSVLGLYEMAKYVIKKTERKVSYY------NILIKEMCRRCDFKGPRDLLVEMRQVGCEP 329
F G E A I++ + ++ N L+ +C+ K +++ M Q G +P
Sbjct: 269 FCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDP 328
Query: 330 ITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFF 389
TYN V+ LCK G+ +A E+L++M+ R+C P+ +TY I C+ + + A
Sbjct: 329 DVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 390 NQMVKRGLQPRLATHAAFIKG 410
+ +G+ P + T + I+G
Sbjct: 389 RVLTSKGILPDVCTFNSLIQG 409
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 109/269 (40%), Gaps = 29/269 (10%)
Query: 242 SKALTKKGIWRVVEVLNQ-VGGSCLVSGVRALIEMFSVL--------------------- 279
++ LT KGI V N + G CL R +E+F +
Sbjct: 388 ARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCS 447
Query: 280 -GLYEMAKYVIKKTE-----RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLT 333
G + A ++K+ E R V YN LI C+ + ++ EM G ++T
Sbjct: 448 KGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVT 507
Query: 334 YNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393
YN ++ LCK+ + DA +L+++M+ PD TY + + CR G A + M
Sbjct: 508 YNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMT 567
Query: 394 KRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPV 453
G +P + T+ I G R E A K + K + + Y+ + +
Sbjct: 568 SNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTT 627
Query: 454 MAKNVLSEMM-KNGLRPNVSVYRRVLKHL 481
A N+ EM+ +N P+ YR V + L
Sbjct: 628 EAINLFREMLEQNEAPPDAVSYRIVFRGL 656
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 98/257 (38%), Gaps = 43/257 (16%)
Query: 260 VGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLL 319
V G C V+ IE+ V+ + + + V YN +I +C+ + K ++L
Sbjct: 302 VNGLCKAGHVKHAIEIMDVM--------LQEGYDPDVYTYNSVISGLCKLGEVKEAVEVL 353
Query: 320 VEMRQVGCEPITLTYNYVLGVLCKNGQDADACEL-------------------------- 353
+M C P T+TYN ++ LCK Q +A EL
Sbjct: 354 DQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLT 413
Query: 354 ---------LEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATH 404
EEM + C PD TY + I C GK D A N QM G + T+
Sbjct: 414 RNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITY 473
Query: 405 AAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464
I G+ + +A + S +++ Y+ L K+ A ++ +M+
Sbjct: 474 NTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 533
Query: 465 NGLRPNVSVYRRVLKHL 481
G +P+ Y +L H
Sbjct: 534 EGQKPDKYTYNSLLTHF 550
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 91/215 (42%), Gaps = 4/215 (1%)
Query: 277 SVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNY 336
++L L +M Y + E+ + +++ D G + +M + GC ++ N
Sbjct: 208 AILMLEDMPSYGLVPDEKT---FTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNV 264
Query: 337 VLGVLCKNGQDADACELLEEMLGRNCH-PDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR 395
++ CK G+ DA ++EM ++ PD T+ + C+ G A + M++
Sbjct: 265 IVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE 324
Query: 396 GLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMA 455
G P + T+ + I G ++A + + + S + + Y+ L S K N A
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEA 384
Query: 456 KNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMA 490
+ + G+ P+V + +++ L + +A
Sbjct: 385 TELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVA 419
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 91/200 (45%)
Query: 279 LGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338
L L + K K E V Y+ +I +C+ +L EM G P +TY+ ++
Sbjct: 236 LALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLI 295
Query: 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQ 398
LC G+ +DA LL +M+ R +P+ +T+ I + GK A + +M+KR +
Sbjct: 296 SCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSID 355
Query: 399 PRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNV 458
P + T+++ I G+ + R +A + + L K + + Y+ L + K +
Sbjct: 356 PNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMEL 415
Query: 459 LSEMMKNGLRPNVSVYRRVL 478
EM + GL N Y ++
Sbjct: 416 FREMSQRGLVGNTVTYTTLI 435
Score = 70.1 bits (170), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%)
Query: 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377
L+ M Q GC+P +TY V+ LCK G A LL +M + + Y I C
Sbjct: 205 LIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLC 264
Query: 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437
+ D A N F +M +G++P + T+++ I + R+ DA + + ++ + + +
Sbjct: 265 KYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLV 324
Query: 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+S L K V A+ + EM+K + PN+ Y
Sbjct: 325 TFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTY 361
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 4/178 (2%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YNILI CR LL +M ++G EP +T N +L C + +DA L+++M+
Sbjct: 116 YNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMV 175
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
PD +T+ I K A ++MV+RG QP L T+ A + G + R +
Sbjct: 176 EMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNG--LCKRGD 233
Query: 419 DAYKYVVLSA-DKYKSSSN-MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+L+ + K +N ++YS + K + A N+ +EM G+RPNV Y
Sbjct: 234 TDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITY 291
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y ++ +C+R D +LL +M E + Y+ V+ LCK + DA L EM
Sbjct: 221 YGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEME 280
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411
+ P+ ITY I C G++ A + M++R + P L T +A I +
Sbjct: 281 NKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAF 333
Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 88/203 (43%), Gaps = 6/203 (2%)
Query: 293 ERKVS----YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDA 348
ERK++ ++ LI ++ L EM + +P TY+ ++ C +
Sbjct: 316 ERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLG 375
Query: 349 DACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFI 408
+A ++LE M+ ++C P+ +TY I C+ + D F +M +RGL T+ I
Sbjct: 376 EAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLI 435
Query: 409 KGYFIFYRYEDAYKYVVLSADKYKSSSNML-YSLLASLHDKNNNPVMAKNVLSEMMKNGL 467
G+F R D + V N+L Y++L KN A V + ++ +
Sbjct: 436 HGFFQ-ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTM 494
Query: 468 RPNVSVYRRVLKHLHTSHQEHMA 490
P++ Y +++ + + + M
Sbjct: 495 EPDIYTYNIMIEGMCKAGKWKMG 517
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 43/91 (47%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI + D + + +M VG P LTYN +L LCKNG+ A A + E +
Sbjct: 431 YTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQ 490
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFF 389
PD TY I I C+ GK+ + +F
Sbjct: 491 RSTMEPDIYTYNIMIEGMCKAGKWKMGGIYF 521
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 271 ALIEMFSVLGLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQV 325
+LI F +L AK +++ RK V YN LI C+ +L EM Q
Sbjct: 363 SLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQR 422
Query: 326 GCEPITLTYNYVLGVLCKNGQDADACELL-EEMLGRNCHPDAITYEIFIVYSCRVGKFDV 384
G T+TY ++ + +D D +++ ++M+ HP+ +TY I + C+ GK
Sbjct: 423 GLVGNTVTYTTLIHGFFQ-ARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAK 481
Query: 385 AFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK 430
A F + + ++P + T+ I+G +++ Y V SA K
Sbjct: 482 AMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWKMGGIYFVASALK 527
Score = 42.7 bits (99), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 69/170 (40%)
Query: 321 EMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG 380
+M +G TYN ++ C+ + + A LL +M+ PD +T + C
Sbjct: 103 KMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGN 162
Query: 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYS 440
+ A +QMV+ G +P T I G F+ + +A + + + Y
Sbjct: 163 RISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYG 222
Query: 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMA 490
+ + K + +A N+L++M + NV +Y V+ L E A
Sbjct: 223 AVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDA 272
>sp|Q9SSR4|PPR77_ARATH Pentatricopeptide repeat-containing protein At1g52620
OS=Arabidopsis thaliana GN=At1g52620 PE=2 SV=1
Length = 819
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 40/248 (16%)
Query: 271 ALIEMFSVLGLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQV 325
+I + LG E A V K+ + K + + +I C+ DF LL E+++
Sbjct: 245 TIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVASDRLLSEVKER 304
Query: 326 G-----------------------------------CEPITLTYNYVLGVLCKNGQDADA 350
G C+P TYN ++ LCK G+ A
Sbjct: 305 GLRVSVWFLNNIIDAKYRHGYKVDPAESIGWIIANDCKPDVATYNILINRLCKEGKKEVA 364
Query: 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
L+E + P+ ++Y I C+ ++D+A QM +RG +P + T+ I G
Sbjct: 365 VGFLDEASKKGLIPNNLSYAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHG 424
Query: 411 YFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN 470
+ +DA V D+ S +Y++L S K + AK + SEM+ + P+
Sbjct: 425 LVVSGHMDDAVNMKVKLIDRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPD 484
Query: 471 VSVYRRVL 478
VY ++
Sbjct: 485 AYVYATLI 492
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 93/212 (43%), Gaps = 5/212 (2%)
Query: 272 LIEMFSVLGLYEMA-KYVIKKTER----KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVG 326
LI+ + Y++A K +++ ER + Y ILI + ++ V++ G
Sbjct: 386 LIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRG 445
Query: 327 CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF 386
P YN ++ LCK G+ A L EML RN PDA Y I R G FD A
Sbjct: 446 VSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFDEAR 505
Query: 387 NFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLH 446
F+ V++G++ + H A IKG+ ++A + +++ YS + +
Sbjct: 506 KVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIIDGY 565
Query: 447 DKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
K + A + M KN +PNV Y ++
Sbjct: 566 VKQQDMATAIKIFRYMEKNKCKPNVVTYTSLI 597
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI+ C+ ++ LL++M + GC+P +TY ++ L +G DA + +++
Sbjct: 383 YAPLIQAYCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLI 442
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
R PDA Y + + C+ G+F A F++M+ R + P +A I G+ ++
Sbjct: 443 DRGVSPDAAIYNMLMSGLCKTGRFLPAKLLFSEMLDRNILPDAYVYATLIDGFIRSGDFD 502
Query: 419 DAYKYVVLSADK 430
+A K LS +K
Sbjct: 503 EARKVFSLSVEK 514
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 5/144 (3%)
Query: 271 ALIEMFSVLGLYEMAKYVI-----KKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV 325
LI+ F G ++ A+ V K + V ++N +IK CR + M +
Sbjct: 490 TLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEE 549
Query: 326 GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVA 385
P TY+ ++ K A A ++ M C P+ +TY I C G F +A
Sbjct: 550 HLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQGDFKMA 609
Query: 386 FNFFNQMVKRGLQPRLATHAAFIK 409
F +M R L P + T+ I+
Sbjct: 610 EETFKEMQLRDLVPNVVTYTTLIR 633
Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 96/243 (39%), Gaps = 37/243 (15%)
Query: 301 ILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR 360
IL+K MC + R L+ GC P + YN ++G CK G +A + +E+ +
Sbjct: 210 ILVKGMCNEGKVEVGRKLIEGRWGKGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLK 269
Query: 361 NCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL----------------------- 397
P T+ I C+ G F + +++ +RGL
Sbjct: 270 GFMPTLETFGTMINGFCKEGDFVASDRLLSEVKERGLRVSVWFLNNIIDAKYRHGYKVDP 329
Query: 398 ------------QPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASL 445
+P +AT+ I + E A ++ ++ K +N+ Y+ L
Sbjct: 330 AESIGWIIANDCKPDVATYNILINRLCKEGKKEVAVGFLDEASKKGLIPNNLSYAPLIQA 389
Query: 446 HDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSS 505
+ K+ +A +L +M + G +P++ Y ++ L S HM ++ + + G S
Sbjct: 390 YCKSKEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSG--HMDDAVNMKVKLIDRGVS 447
Query: 506 VEA 508
+A
Sbjct: 448 PDA 450
Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 44/113 (38%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI R DF R + + G + + +N ++ C++G +A + M
Sbjct: 488 YATLIDGFIRSGDFDEARKVFSLSVEKGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMN 547
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411
+ PD TY I + A F M K +P + T+ + I G+
Sbjct: 548 EEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGF 600
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 15/172 (8%)
Query: 229 NEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSG-VRALIEMFSVLGLYEMAKY 287
+EKA+ S + + K+GI VE V + SG L+E++ + M +
Sbjct: 501 HEKAYA------SFEEMCKEGIKPSVETYTSVLDAFRRSGDTGKLMEIWKL-----MLRE 549
Query: 288 VIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQD 347
IK T +++Y N L+ ++ + RD++ E ++G +P +TYN ++ + GQD
Sbjct: 550 KIKGT--RITY-NTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQD 606
Query: 348 ADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP 399
A +LL+EM N PD+ITY I RV F AF + MVK G P
Sbjct: 607 AKLPQLLKEMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVP 658
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/337 (22%), Positives = 127/337 (37%), Gaps = 44/337 (13%)
Query: 207 RLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLV 266
R DD + + ++ NVY + L + + K +W + E +++ G
Sbjct: 288 RYDDAWEVYEAMDKINVYP---DNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQ 344
Query: 267 SGVRALIEMFSVLGLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVE 321
L++ F GL E A + + E+K YN L+ + + L E
Sbjct: 345 DVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTE 404
Query: 322 MRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK 381
MR G +P TYN ++ + Q LL EM P+ +Y I R K
Sbjct: 405 MRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKK 464
Query: 382 F-DVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY--------KYVVLSADKYK 432
D+A + F +M K GL+P ++ A I Y + +E AY + + S + Y
Sbjct: 465 MSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYASFEEMCKEGIKPSVETYT 524
Query: 433 S---------------------------SSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465
S + + Y+ L K + A++V+SE K
Sbjct: 525 SVLDAFRRSGDTGKLMEIWKLMLREKIKGTRITYNTLLDGFAKQGLYIEARDVVSEFSKM 584
Query: 466 GLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502
GL+P+V Y ++ Q+ L ++L+L
Sbjct: 585 GLQPSVMTYNMLMNAYARGGQDAKLPQLLKEMAALNL 621
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 98/240 (40%), Gaps = 28/240 (11%)
Query: 270 RALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEP 329
RA +F++LG MA Y++ +L+ + + +F+ R
Sbjct: 239 RACSVLFTLLGRERMADYIL-----------LLLSNLPDKEEFRDVR------------- 274
Query: 330 ITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK-FDVAFNF 388
YN + L + + DA E+ E M N +PD +T I I + G+ +
Sbjct: 275 ---LYNAAISGLSASQRYDDAWEVYEAMDKINVYPDNVTCAILITTLRKAGRSAKEVWEI 331
Query: 389 FNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDK 448
F +M ++G++ +K + E+A K S+ ++Y+ L ++K
Sbjct: 332 FEKMSEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNK 391
Query: 449 NNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSSVEA 508
+N+ + + +EM GL+P+ + Y ++ Q + + L L L +V++
Sbjct: 392 SNHIEEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKS 451
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 73.9 bits (180), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 82/329 (24%), Positives = 137/329 (41%), Gaps = 41/329 (12%)
Query: 169 VLNSEKVSALCFLKYMREIM-PEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVC 227
V N + A+CF M++++ P+F + V+ D Y+ + L + C
Sbjct: 654 VKNGQVKEAMCFFHQMKKLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYN------C 707
Query: 228 LNEKAFGFLPVLISSKALTKKGIWRVVE-----VLNQV---GGSCLV------------S 267
++ A F LI S L + GI V V N + G S LV S
Sbjct: 708 ADQPANLFWEDLIGS-ILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVS 766
Query: 268 GVRALIEMFSV-LGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVG 326
G R L E F+ LG+ + K+ YN+LI + + +D+ ++++ G
Sbjct: 767 GARTLFEKFTKDLGV-----------QPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTG 815
Query: 327 CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF 386
C P TYN++L K+G+ + EL +EM C + IT+ I I + G D A
Sbjct: 816 CIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGNVDDAL 875
Query: 387 N-FFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASL 445
+ +++ M R P T+ I G R +A + D + +Y++L +
Sbjct: 876 DLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILING 935
Query: 446 HDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
K A + M+K G+RP++ Y
Sbjct: 936 FGKAGEADAACALFKRMVKEGVRPDLKTY 964
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 90/211 (42%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V + IL+ +C+ +F D L MR G P TYN ++ L + + DA EL
Sbjct: 363 VVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFG 422
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
M P A TY +FI Y + G A F +M +G+ P + A +
Sbjct: 423 NMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAG 482
Query: 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYR 475
R +A + D ++ Y+++ + K A +LSEMM+NG P+V V
Sbjct: 483 RDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVN 542
Query: 476 RVLKHLHTSHQEHMAKCLSSRYSSLSLGSSV 506
++ L+ + + A + R + L +V
Sbjct: 543 SLINTLYKADRVDEAWKMFMRMKEMKLKPTV 573
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 291 KTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350
K + V YN L+ + + + +L M Q GC P T+T+N + LCKN + A
Sbjct: 568 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLA 627
Query: 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
++L +M+ C PD TY I + G+ A FF+QM K+ + P T + G
Sbjct: 628 LKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQM-KKLVYPDFVTLCTLLPG 686
Query: 411 YFIFYRYEDAYKYVV 425
EDAYK +
Sbjct: 687 VVKASLIEDAYKIIT 701
Score = 66.2 bits (160), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 85/198 (42%), Gaps = 14/198 (7%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI + + + L M GC P YN ++ K G+ AC L + M+
Sbjct: 894 YGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMV 953
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
PD TY + + C VG+ D ++F ++ + GL P + + I G +R E
Sbjct: 954 KEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLE 1013
Query: 419 DAYKYV-------VLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV 471
+A ++ D Y +S +L +A + ++ A + +E+ + GL PNV
Sbjct: 1014 EALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEE------AGKIYNEIQRAGLEPNV 1067
Query: 472 SVYRRVLKHLHTSHQ-EH 488
+ +++ S + EH
Sbjct: 1068 FTFNALIRGYSLSGKPEH 1085
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 80/178 (44%)
Query: 316 RDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVY 375
+ + ++ +G P ++TYN ++ K G+ +A +LL EM+ C PD I I
Sbjct: 488 KQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINT 547
Query: 376 SCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSS 435
+ + D A+ F +M + L+P + T+ + G + ++A + K +
Sbjct: 548 LYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPN 607
Query: 436 NMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCL 493
+ ++ L KN+ +A +L +MM G P+V Y ++ L + Q A C
Sbjct: 608 TITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCF 665
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 2/205 (0%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y+ L+ + +R D LL EM +G +P T+ + VL + G+ +A E+L+ M
Sbjct: 226 YSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMD 285
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
C PD +TY + I C K D A F +M +P T+ + F R
Sbjct: 286 DEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLD-RFSDNRDL 344
Query: 419 DAYKYVVLSADKYKSSSNML-YSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRV 477
D+ K +K +++ +++L K N A + L M G+ PN+ Y +
Sbjct: 345 DSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTL 404
Query: 478 LKHLHTSHQEHMAKCLSSRYSSLSL 502
+ L H+ A L SL +
Sbjct: 405 ICGLLRVHRLDDALELFGNMESLGV 429
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 93/204 (45%), Gaps = 3/204 (1%)
Query: 281 LYEMAKYV-IKKTERKVSYYNILIKEMCRRCDFKGPRDLLVE-MRQVGCEPITLTYNYVL 338
L+E+ K + + E +NI+I + + + DL + M P TY ++
Sbjct: 839 LFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 898
Query: 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQ 398
L K+G+ +A +L E ML C P+ Y I I + G+ D A F +MVK G++
Sbjct: 899 DGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVR 958
Query: 399 PRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNV 458
P L T++ + + R ++ Y + + + Y+L+ + K++ A +
Sbjct: 959 PDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVL 1018
Query: 459 LSEM-MKNGLRPNVSVYRRVLKHL 481
+EM G+ P++ Y ++ +L
Sbjct: 1019 FNEMKTSRGITPDLYTYNSLILNL 1042
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 78/171 (45%), Gaps = 2/171 (1%)
Query: 321 EMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG 380
+M+ G P + N L L K G+D +A ++ + PD++TY + + +VG
Sbjct: 458 KMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVG 517
Query: 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYK-YVVLSADKYKSSSNMLY 439
+ D A ++M++ G +P + + I + R ++A+K ++ + K K +
Sbjct: 518 EIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVVTYN 577
Query: 440 SLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMA 490
+LLA L KN A + M++ G PN + + L + + +A
Sbjct: 578 TLLAGLG-KNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLA 627
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
Query: 272 LIEMFSVLGLYEMA----KYVIKKTER-KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVG 326
LI F G + A K ++K+ R + Y++L+ +C E+++ G
Sbjct: 932 LINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESG 991
Query: 327 CEPITLTYNYVLGVLCKNGQDADACELLEEM-LGRNCHPDAITYEIFIVYSCRVGKFDVA 385
P + YN ++ L K+ + +A L EM R PD TY I+ G + A
Sbjct: 992 LNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEA 1051
Query: 386 FNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421
+N++ + GL+P + T A I+GY + + E AY
Sbjct: 1052 GKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAY 1087
Score = 35.4 bits (80), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 89/247 (36%), Gaps = 44/247 (17%)
Query: 272 LIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPIT 331
L EM V L M K +IK R + Y + K + + K L +MR+ G
Sbjct: 134 LEEMAYVFDL--MQKRIIK---RDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNA 188
Query: 332 LTYNYVLGVLCKNGQDADACE-----------------------------------LLEE 356
+YN ++ +L K+ +A E LL+E
Sbjct: 189 YSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKE 248
Query: 357 MLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416
M P+ T+ I I R GK + A+ +M G P + T+ I R
Sbjct: 249 METLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDA-LCTAR 307
Query: 417 YEDAYKYVV--LSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
D K V + ++K +LL D N + K SEM K+G P+V +
Sbjct: 308 KLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSD-NRDLDSVKQFWSEMEKDGHVPDVVTF 366
Query: 475 RRVLKHL 481
++ L
Sbjct: 367 TILVDAL 373
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 94/230 (40%), Gaps = 35/230 (15%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACEL-- 353
V Y L+ C+ + R LL M GCEP + Y+ ++ LCK G+ +A E+
Sbjct: 639 VVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKT 698
Query: 354 ---------------------------------LEEMLGRNCHPDAITYEIFIVYSCRVG 380
L +ML +C P+ + Y I C+VG
Sbjct: 699 EMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 758
Query: 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYS 440
K D A+ M ++G QP + T+ A I G+ + + E + + K + + + Y
Sbjct: 759 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 818
Query: 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMA 490
+L KN +A N+L EM + + + YR+V++ + E +
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLG 868
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 92/216 (42%), Gaps = 17/216 (7%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V Y I++ C+ + R EMR+VGC P +TY ++ K + + A EL E
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV----------------KRGLQP 399
ML C P+ +TY I C+ G+ + A F +M +P
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 637
Query: 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVL 459
+ T+ A + G+ +R E+A K + + + + ++Y L K A+ V
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVK 697
Query: 460 SEMMKNGLRPNVSVYRRVL-KHLHTSHQEHMAKCLS 494
+EM ++G + Y ++ ++ Q+ +K LS
Sbjct: 698 TEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLS 733
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 76/204 (37%), Gaps = 16/204 (7%)
Query: 306 MCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD 365
+C ++ ++ EM G P T TY+ VL LC + A L EEM D
Sbjct: 458 LCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVAD 517
Query: 366 AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVV 425
TY I + C+ G + A +FN+M + G P + T+ A I Y + A +
Sbjct: 518 VYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFE 577
Query: 426 LSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM----------------KNGLRP 469
+ + + YS L H K A + M N RP
Sbjct: 578 TMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERP 637
Query: 470 NVSVYRRVLKHLHTSHQEHMAKCL 493
NV Y +L SH+ A+ L
Sbjct: 638 NVVTYGALLDGFCKSHRVEEARKL 661
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 84/223 (37%), Gaps = 21/223 (9%)
Query: 280 GLYEMAKYVIKKTERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY 334
G YE A VI++ + S Y+ ++ +C + L EM++ G TY
Sbjct: 462 GKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTY 521
Query: 335 NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK 394
++ CK G A + EM C P+ +TY I + K A F M+
Sbjct: 522 TIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLS 581
Query: 395 RGLQPRLATHAAFIKGYF----------IFYRY------EDAYKYVVLSADKYKSSSNML 438
G P + T++A I G+ IF R D Y D + + +
Sbjct: 582 EGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVT 641
Query: 439 YSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
Y L K++ A+ +L M G PN VY ++ L
Sbjct: 642 YGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGL 684
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 83/208 (39%), Gaps = 24/208 (11%)
Query: 298 YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACE-LLEE 356
+Y LI +C F+ D L MR C P +TY+ +L C N + C+ +L
Sbjct: 304 FYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLL-CGCLNKKQLGRCKRVLNM 362
Query: 357 MLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF---- 412
M+ C+P + + C G A+ +MVK G P + I
Sbjct: 363 MMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKD 422
Query: 413 -----IFYRYEDAYKY-----VVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEM 462
+ E AY VVL+ S + L S A ++K A +V+ EM
Sbjct: 423 SLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCS--AGKYEK------AFSVIREM 474
Query: 463 MKNGLRPNVSVYRRVLKHLHTSHQEHMA 490
+ G P+ S Y +VL +L + + +A
Sbjct: 475 IGQGFIPDTSTYSKVLNYLCNASKMELA 502
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 79/202 (39%), Gaps = 40/202 (19%)
Query: 251 WRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERK-----VSYYNILIKE 305
+++++++ + G V A+I+ F ++G E ++++ K Y +LI
Sbjct: 764 YKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDH 823
Query: 306 MCRRCDFKGPRDLLVEMRQVGCEPITLTYNYV-----------LGVLCKNGQDADA---- 350
C+ +LL EM+Q T Y V LG+L + GQD A
Sbjct: 824 CCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKEFIESLGLLDEIGQDDTAPFLS 883
Query: 351 ------------------CELLEEM--LGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFN 390
LLEE+ + TY I C K + AF F+
Sbjct: 884 VYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFS 943
Query: 391 QMVKRGLQPRLATHAAFIKGYF 412
+M K+G+ P + + + IKG F
Sbjct: 944 EMTKKGVIPEMQSFCSLIKGLF 965
Score = 36.2 bits (82), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 14/206 (6%)
Query: 289 IKKTERKV--SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ 346
I+ +++V + N+L+++ CR F + L ++ P TYN ++ K +
Sbjct: 191 IRDDDKEVFGEFLNVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADR 250
Query: 347 DADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAA 406
A + EM N D T F C+VGK+ A P +
Sbjct: 251 LDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTLVET---ENFVPDTVFYTK 307
Query: 407 FIKGYFIFYRYEDAYKYVVLSADKYKSSSNM----LYSLLASLHDKNNNPVMAKNVLSEM 462
I G +E+A ++ ++ +++S + YS L K VL+ M
Sbjct: 308 LISGLCEASLFEEAMDFL----NRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMM 363
Query: 463 MKNGLRPNVSVYRRVLKHLHTSHQEH 488
M G P+ ++ L H + + +H
Sbjct: 364 MMEGCYPSPKIFNS-LVHAYCTSGDH 388
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 19/187 (10%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
+NILI + + ++L M G +P TYN +L LCK + D E + M+
Sbjct: 464 FNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMV 523
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG-------- 410
+ C P+ T+ I + CR K D A +M + + P T I G
Sbjct: 524 EKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLD 583
Query: 411 --YFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLR 468
Y +F + E+AYK SSS Y+++ + N MA+ + EM+ L
Sbjct: 584 GAYTLFRKMEEAYKV---------SSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLG 634
Query: 469 PNVSVYR 475
P+ YR
Sbjct: 635 PDGYTYR 641
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 4/215 (1%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
+S +N L++ +C++ D K LL ++ + G P TYN + LC+ G+ A ++
Sbjct: 216 LSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVG 275
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
++ + PD ITY I C+ KF A + +MV GL+P T+ I GY
Sbjct: 276 CLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGG 335
Query: 416 RYEDAYKYVVLSADKYKSSSNMLY-SLLASL-HDKNNNPVMAKNVLSEMMKNGLRPNVSV 473
+ A + V + Y SL+ L H+ N +A + +E + G++PNV +
Sbjct: 336 MVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALA--LFNEALGKGIKPNVIL 393
Query: 474 YRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSSVEA 508
Y ++K L A L++ S L V+
Sbjct: 394 YNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQT 428
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 59/268 (22%), Positives = 108/268 (40%), Gaps = 32/268 (11%)
Query: 235 FLPVLISSKALTKKGIWRVVEVLN----QVGGSCLVSGVRALIEMFSVLGLYEMAKYVIK 290
LP +++ +K + +E+ N +VG +S R++IE G +E + V+
Sbjct: 5 LLPKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEVLV 64
Query: 291 KTERKVS------YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344
V Y +K R+ + ++ M CEP +YN ++ VL +
Sbjct: 65 DMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDS 124
Query: 345 GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATH 404
G A ++ M R PD ++ I + C+ + A N M +G + + +
Sbjct: 125 GYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAY 184
Query: 405 AAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYS-----------LLASLHDKNNNPV 453
+ G+ YE+ +K A+ Y+ ML S LL L K +
Sbjct: 185 CTVVGGF-----YEENFK-----AEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKE 234
Query: 454 MAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
K +L +++K G+ PN+ Y ++ L
Sbjct: 235 CEK-LLDKVIKRGVLPNLFTYNLFIQGL 261
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 75/198 (37%)
Query: 284 MAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK 343
+ K V + E YN LI C+ + ++ + G P TY ++ LC
Sbjct: 309 LGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCH 368
Query: 344 NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT 403
G+ A L E LG+ P+ I Y I G A N+M ++GL P + T
Sbjct: 369 EGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQT 428
Query: 404 HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463
+ G DA V + K +++L + A +L M+
Sbjct: 429 FNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVML 488
Query: 464 KNGLRPNVSVYRRVLKHL 481
NG+ P+V Y +L L
Sbjct: 489 DNGVDPDVYTYNSLLNGL 506
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 290 KKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDAD 349
K + V YN LIK + + L EM + G P T+N ++ LCK G +D
Sbjct: 385 KGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSD 444
Query: 350 ACELLEEMLGRNCHPDAITYEIFI-VYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFI 408
A L++ M+ + PD T+ I I YS ++ K + A + M+ G+ P + T+ + +
Sbjct: 445 ADGLVKVMISKGYFPDIFTFNILIHGYSTQL-KMENALEILDVMLDNGVDPDVYTYNSLL 503
Query: 409 KGYFIFYRYEDA 420
G ++ED
Sbjct: 504 NGLCKTSKFEDV 515
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 3/133 (2%)
Query: 277 SVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV-GCEPITLTYN 335
LGL E K K + LI C+ D G L +M + T TYN
Sbjct: 549 EALGLLEEMKN--KSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYN 606
Query: 336 YVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR 395
++ + A +L +EM+ R PD TY + + C+ G ++ + F +M++
Sbjct: 607 IIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMEN 666
Query: 396 GLQPRLATHAAFI 408
G P L T I
Sbjct: 667 GFIPSLTTLGRVI 679
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 72/183 (39%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI +C + L E G +P + YN ++ L G +A +L EM
Sbjct: 359 YRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMS 418
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ P+ T+ I + C++G A M+ +G P + T I GY + E
Sbjct: 419 EKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKME 478
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+A + + + D Y+ L + K + M++ G PN+ + +L
Sbjct: 479 NALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILL 538
Query: 479 KHL 481
+ L
Sbjct: 539 ESL 541
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 73/180 (40%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
+ I +K C+ LL M GCE + Y V+G + A+ EL +ML
Sbjct: 149 FTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKML 208
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
T+ + C+ G ++++KRG+ P L T+ FI+G +
Sbjct: 209 ASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELD 268
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
A + V ++ + Y+ L KN+ A+ L +M+ GL P+ Y ++
Sbjct: 269 GAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLI 328
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 14/261 (5%)
Query: 233 FGFLPVLISSKALT----KKG-IWRVVEVLNQVGGSCLVSGVRALIEMFSVL---GLYEM 284
FGF P ++ L KKG I + ++ ++G LV+ R + + L G+ +
Sbjct: 192 FGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQ 251
Query: 285 AKYVIKKTERKVSY-----YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLG 339
+ +K + + YN ++ ++C+ K + EMR+ G +TYN ++G
Sbjct: 252 GFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIG 311
Query: 340 VLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP 399
LC+ + +A +++++M +P+ ITY I C VGK A + + RGL P
Sbjct: 312 GLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSP 371
Query: 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVL 459
L T+ + G+ A K V ++ S + Y++L +++N A +
Sbjct: 372 SLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLR 431
Query: 460 SEMMKNGLRPNVSVYRRVLKH 480
M + GL P+V Y VL H
Sbjct: 432 LSMEELGLVPDVHTY-SVLIH 451
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 83/183 (45%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YN LI C L +++ G P +TYN ++ C+ G + A ++++EM
Sbjct: 341 YNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEME 400
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
R P +TY I I R + A M + GL P + T++ I G+ I +
Sbjct: 401 ERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMN 460
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+A + +K + ++Y+ + + K + A +L EM + L PNV+ YR ++
Sbjct: 461 EASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMI 520
Query: 479 KHL 481
+ L
Sbjct: 521 EVL 523
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 285 AKYVIKKTERKVS----YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGV 340
AK V + ER + Y ILI R + + L + M ++G P TY+ ++
Sbjct: 393 AKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHG 452
Query: 341 LCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR 400
C GQ +A L + M+ +NC P+ + Y I+ C+ G A +M ++ L P
Sbjct: 453 FCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPN 512
Query: 401 LATHAAFIK 409
+A++ I+
Sbjct: 513 VASYRYMIE 521
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 78/180 (43%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
+ ILIK C + + DLL+E+ + G P + Y ++ CK G+ A +L EM
Sbjct: 166 FGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMG 225
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ TY + I + G F + +M + G+ P L T+ + R +
Sbjct: 226 KLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTK 285
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
DA++ ++ S + + Y+ L + A V+ +M +G+ PN+ Y ++
Sbjct: 286 DAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLI 345
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 90/203 (44%)
Query: 279 LGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338
L L + K K E V +N +I +C+ +L EM G P +TY+ ++
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLI 302
Query: 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQ 398
LC G+ +DA +LL +M+ + +P+ +T+ I + GKF A ++ M+KR +
Sbjct: 303 SCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID 362
Query: 399 PRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNV 458
P + T+ + + G+ + R + A + K + Y+ L K+ +
Sbjct: 363 PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL 422
Query: 459 LSEMMKNGLRPNVSVYRRVLKHL 481
EM GL + Y +++ L
Sbjct: 423 FREMSHRGLVGDTVTYTTLIQGL 445
Score = 69.3 bits (168), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%)
Query: 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377
L+ M Q GC+P +TY V+ LCK G A LL +M D + + I C
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLC 271
Query: 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437
+ D A N F +M +G++P + T+++ I + R+ DA + + +K + + +
Sbjct: 272 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
Query: 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
++ L K V A+ + +M+K + P++ Y
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTY 368
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 2/177 (1%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
YNILI CRR LL +M ++G EP +T + +L C + +DA L+++M+
Sbjct: 123 YNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMV 182
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
PD IT+ I K A ++MV+RG QP L T+ + G +
Sbjct: 183 EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTD 242
Query: 419 DAYKYV-VLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
A + + A K ++ + +++ SL K + A N+ EM G+RPNV Y
Sbjct: 243 LALNLLNKMEAAKIEADVVIFNTIIDSLC-KYRHVDDALNLFKEMETKGIRPNVVTY 298
Score = 62.4 bits (150), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 12/187 (6%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y +++ +C+R D +LL +M E + +N ++ LCK DA L +EM
Sbjct: 228 YGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEME 287
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
+ P+ +TY I C G++ A + M+++ + P L T A I + ++
Sbjct: 288 TKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFV 347
Query: 419 DAYKYVVLSADKYKSSSN---MLYSLLAS---LHDKNNNPVMAKNVLSEMMKNGLRPNVS 472
+A K L D K S + Y+ L + +HD+ + AK + M+ P+V
Sbjct: 348 EAEK---LYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDK---AKQMFEFMVSKDCFPDVV 401
Query: 473 VYRRVLK 479
Y ++K
Sbjct: 402 TYNTLIK 408
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 82/198 (41%)
Query: 284 MAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK 343
++ + KK + +N LI + F L +M + +P TYN ++ C
Sbjct: 318 LSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM 377
Query: 344 NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT 403
+ + A ++ E M+ ++C PD +TY I C+ + + F +M RGL T
Sbjct: 378 HDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVT 437
Query: 404 HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463
+ I+G F ++A K M YS+L N A V M
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 497
Query: 464 KNGLRPNVSVYRRVLKHL 481
K+ ++ ++ +Y +++ +
Sbjct: 498 KSEIKLDIYIYTTMIEGM 515
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 93/212 (43%), Gaps = 3/212 (1%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V YN LIK C+ + +L EM G T+TY ++ L +G +A ++ +
Sbjct: 400 VVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFK 459
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+M+ PD +TY I + C GK + A F+ M K ++ + + I+G
Sbjct: 460 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 519
Query: 416 RYEDAYK-YVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474
+ +D + + LS K + ++++ L K A +L +M ++G PN Y
Sbjct: 520 KVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ-EAYALLKKMKEDGPLPNSGTY 578
Query: 475 RRVLK-HLHTSHQEHMAKCLSSRYSSLSLGSS 505
+++ HL + A+ + S +G +
Sbjct: 579 NTLIRAHLRDGDKAASAELIREMRSCRFVGDA 610
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 75/184 (40%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI+ + D + + +M G P +TY+ +L LC NG+ A E+ + M
Sbjct: 438 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 497
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
D Y I C+ GK D ++ F + +G++P + T+ I G +
Sbjct: 498 KSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 557
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+AY + + ++ Y+ L H ++ + + ++ EM + S V
Sbjct: 558 EAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIGLVA 617
Query: 479 KHLH 482
LH
Sbjct: 618 NMLH 621
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 64/149 (42%)
Query: 333 TYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQM 392
TYN ++ C+ Q + A LL +M+ P +T + C + A +QM
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 393 VKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNP 452
V+ G +P T I G F+ + +A V + + + Y ++ + K +
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241
Query: 453 VMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481
+A N+L++M + +V ++ ++ L
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSL 270
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 289 IKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDA 348
+K + V YN +I +C + + LL +M++ G P + TYN ++ ++G A
Sbjct: 533 LKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKA 592
Query: 349 DACELLEEMLGRNCH--PDAITYEIFIVYSCRVGKFDVAF 386
+ EL+ EM R+C DA T + + G+ D +F
Sbjct: 593 ASAELIREM--RSCRFVGDASTIGL-VANMLHDGRLDKSF 629
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 72.8 bits (177), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 6/182 (3%)
Query: 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355
V +NIL+ + C+ + + + E+ + +P +++N ++ CK G + L
Sbjct: 240 VYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKH 299
Query: 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415
+M PD TY I C+ K D A F++M KRGL P I G+
Sbjct: 300 QMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNG 359
Query: 416 RYE---DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVS 472
+ ++Y+ ++ K +LY+ L + KN + V A+N++ M++ GLRP+
Sbjct: 360 EIDLMKESYQKML---SKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKI 416
Query: 473 VY 474
Y
Sbjct: 417 TY 418
Score = 63.5 bits (153), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 81/187 (43%), Gaps = 6/187 (3%)
Query: 291 KTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350
+T V Y+ LI +C+ G L EM + G P + + ++ +NG+
Sbjct: 305 RTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLM 364
Query: 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410
E ++ML + PD + Y + C+ G A N + M++RGL+P T+ I G
Sbjct: 365 KESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDG 424
Query: 411 YFIFYRYEDAYKYVVLSADKYKSS---SNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGL 467
F R D + + + ++ + +S L K + A+ L EM++ G+
Sbjct: 425 ---FCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGI 481
Query: 468 RPNVSVY 474
+P+ Y
Sbjct: 482 KPDDVTY 488
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 3/190 (1%)
Query: 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358
Y LI CR D + ++ EM Q G E + ++ ++ +CK G+ DA L EML
Sbjct: 418 YTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREML 477
Query: 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418
PD +TY + + C+ G F +M G P + T+ + G + +
Sbjct: 478 RAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMK 537
Query: 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478
+A + + ++ Y+ L H ++ N E+ G+ +++ Y+ ++
Sbjct: 538 NADMLLDAMLNIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEI---GIVADLASYKSIV 594
Query: 479 KHLHTSHQEH 488
L + ++H
Sbjct: 595 NELDRASKDH 604
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 85/201 (42%), Gaps = 8/201 (3%)
Query: 286 KYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG 345
K + K + + YN L+ C+ D R+++ M + G P +TY ++ C+ G
Sbjct: 370 KMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRGG 429
Query: 346 QDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHA 405
A E+ +EM D + + + C+ G+ A +M++ G++P T+
Sbjct: 430 DVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYT 489
Query: 406 AFIKGYFIFYRYEDAYKYV-VLSADKYKSSS---NMLYSLLASLHDKNNNPVMAKNVLSE 461
+ + + +K + + +D + S N+L + L L N A +L
Sbjct: 490 MMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKN----ADMLLDA 545
Query: 462 MMKNGLRPNVSVYRRVLKHLH 482
M+ G+ P+ Y +L+ H
Sbjct: 546 MLNIGVVPDDITYNTLLEGHH 566
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,483,033
Number of Sequences: 539616
Number of extensions: 7179002
Number of successful extensions: 22483
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 19442
Number of HSP's gapped (non-prelim): 1819
length of query: 509
length of database: 191,569,459
effective HSP length: 122
effective length of query: 387
effective length of database: 125,736,307
effective search space: 48659950809
effective search space used: 48659950809
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)