Query 047221
Match_columns 509
No_of_seqs 566 out of 2867
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 08:57:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047221.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047221hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 8.2E-57 1.8E-61 480.1 49.2 347 156-507 433-790 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.4E-56 3.1E-61 478.3 48.4 376 128-508 435-849 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.5E-55 3.2E-60 467.0 39.5 366 127-506 120-494 (697)
4 PLN03077 Protein ECB2; Provisi 100.0 4.4E-53 9.6E-58 458.4 40.2 351 145-507 207-626 (857)
5 PLN03081 pentatricopeptide (PP 100.0 2.1E-52 4.5E-57 443.0 40.1 343 149-508 111-464 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 4.7E-51 1E-55 442.6 40.6 345 146-506 309-657 (857)
7 PRK11788 tetratricopeptide rep 99.9 5E-20 1.1E-24 183.2 36.1 295 204-506 44-353 (389)
8 PRK11788 tetratricopeptide rep 99.9 1.9E-19 4.1E-24 179.1 35.0 312 151-472 28-354 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-18 2.3E-23 192.5 43.5 329 159-498 532-898 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.9 5.2E-18 1.1E-22 187.0 45.0 332 159-502 464-801 (899)
11 PRK15174 Vi polysaccharide exp 99.8 8.1E-15 1.8E-19 153.6 42.4 325 166-502 48-383 (656)
12 PRK15174 Vi polysaccharide exp 99.7 3.3E-14 7.1E-19 149.1 38.2 298 197-503 44-350 (656)
13 TIGR00990 3a0801s09 mitochondr 99.7 1.8E-13 3.9E-18 143.8 43.7 340 155-501 155-572 (615)
14 KOG4626 O-linked N-acetylgluco 99.7 1.2E-14 2.7E-19 139.9 27.4 329 160-502 116-487 (966)
15 KOG4422 Uncharacterized conser 99.7 5.4E-13 1.2E-17 123.5 36.6 341 147-501 137-552 (625)
16 TIGR00990 3a0801s09 mitochondr 99.7 3.9E-12 8.6E-17 133.7 42.0 323 169-503 136-540 (615)
17 PRK11447 cellulose synthase su 99.7 3.2E-12 7E-17 143.2 42.7 317 176-501 287-701 (1157)
18 PRK10049 pgaA outer membrane p 99.6 1.2E-11 2.7E-16 132.5 45.0 331 162-503 51-459 (765)
19 PRK11447 cellulose synthase su 99.6 6.9E-12 1.5E-16 140.6 44.1 334 159-505 302-746 (1157)
20 PRK10049 pgaA outer membrane p 99.6 1.1E-11 2.3E-16 133.0 43.5 339 156-503 11-425 (765)
21 KOG4626 O-linked N-acetylgluco 99.6 6.3E-13 1.4E-17 128.4 27.5 310 176-500 202-523 (966)
22 KOG4422 Uncharacterized conser 99.6 9.7E-12 2.1E-16 115.3 33.4 338 156-502 203-592 (625)
23 PRK10747 putative protoheme IX 99.6 1.8E-11 4E-16 121.1 34.6 291 197-499 84-389 (398)
24 PRK14574 hmsH outer membrane p 99.6 8.6E-11 1.9E-15 124.2 40.3 360 131-501 36-480 (822)
25 TIGR00540 hemY_coli hemY prote 99.5 4.4E-11 9.4E-16 119.1 33.0 296 197-498 84-397 (409)
26 PRK09782 bacteriophage N4 rece 99.5 1.3E-09 2.8E-14 117.7 44.5 316 176-503 360-709 (987)
27 PF13429 TPR_15: Tetratricopep 99.5 1.9E-13 4.2E-18 129.1 11.8 259 201-497 14-274 (280)
28 PRK09782 bacteriophage N4 rece 99.5 1.9E-09 4.2E-14 116.4 41.8 320 173-503 391-743 (987)
29 PRK14574 hmsH outer membrane p 99.5 3.3E-09 7.1E-14 112.4 42.3 326 168-503 110-516 (822)
30 KOG1126 DNA-binding cell divis 99.5 3.5E-11 7.5E-16 118.0 25.3 284 211-505 335-625 (638)
31 PF13429 TPR_15: Tetratricopep 99.5 4.3E-13 9.4E-18 126.7 11.9 225 271-502 13-245 (280)
32 COG3071 HemY Uncharacterized e 99.4 1.1E-08 2.4E-13 94.9 36.0 298 197-506 84-396 (400)
33 PF13041 PPR_2: PPR repeat fam 99.4 1.2E-12 2.7E-17 87.6 6.5 45 331-375 3-47 (50)
34 KOG1126 DNA-binding cell divis 99.4 2.6E-10 5.7E-15 111.9 24.6 299 155-470 308-625 (638)
35 PF13041 PPR_2: PPR repeat fam 99.4 2E-12 4.4E-17 86.6 6.6 49 364-412 1-49 (50)
36 TIGR02521 type_IV_pilW type IV 99.3 1.6E-09 3.4E-14 99.0 27.0 200 297-500 32-232 (234)
37 COG2956 Predicted N-acetylgluc 99.3 7.9E-09 1.7E-13 93.1 29.9 286 209-502 49-349 (389)
38 TIGR00540 hemY_coli hemY prote 99.3 1.1E-08 2.5E-13 101.8 34.7 292 163-464 89-398 (409)
39 PRK10747 putative protoheme IX 99.3 1E-08 2.2E-13 101.6 33.5 275 175-464 101-389 (398)
40 COG2956 Predicted N-acetylgluc 99.3 7E-09 1.5E-13 93.5 28.4 248 245-497 49-308 (389)
41 KOG1155 Anaphase-promoting com 99.3 2.1E-08 4.5E-13 94.6 32.5 285 209-498 241-534 (559)
42 TIGR02521 type_IV_pilW type IV 99.3 2.5E-09 5.4E-14 97.7 26.5 197 265-464 30-231 (234)
43 KOG4318 Bicoid mRNA stability 99.3 1.6E-09 3.4E-14 109.4 23.5 249 145-416 10-286 (1088)
44 KOG4318 Bicoid mRNA stability 99.3 1.3E-10 2.9E-15 116.9 16.0 236 185-450 19-285 (1088)
45 KOG2076 RNA polymerase III tra 99.3 5.1E-08 1.1E-12 99.2 34.0 320 168-498 148-510 (895)
46 PRK12370 invasion protein regu 99.2 1E-08 2.2E-13 106.1 29.0 245 247-501 277-536 (553)
47 PRK12370 invasion protein regu 99.2 2E-08 4.4E-13 103.9 30.0 261 194-466 255-536 (553)
48 KOG2076 RNA polymerase III tra 99.2 7.1E-07 1.5E-11 91.1 38.2 336 157-499 170-554 (895)
49 KOG1155 Anaphase-promoting com 99.2 5.3E-08 1.1E-12 91.9 27.9 273 202-500 269-553 (559)
50 KOG2002 TPR-containing nuclear 99.2 7E-08 1.5E-12 98.9 30.3 304 197-503 454-801 (1018)
51 KOG2003 TPR repeat-containing 99.2 8.5E-08 1.8E-12 90.1 27.8 186 309-500 503-689 (840)
52 KOG2003 TPR repeat-containing 99.1 6.6E-08 1.4E-12 90.9 26.0 276 204-486 428-709 (840)
53 KOG1840 Kinesin light chain [C 99.1 3.2E-08 7E-13 98.2 25.2 233 196-463 200-477 (508)
54 KOG1840 Kinesin light chain [C 99.1 1.5E-07 3.3E-12 93.4 27.9 238 261-498 194-477 (508)
55 KOG2002 TPR-containing nuclear 99.1 4.8E-07 1E-11 92.9 31.2 330 165-503 347-748 (1018)
56 KOG1129 TPR repeat-containing 99.1 8.2E-08 1.8E-12 86.7 22.6 235 263-502 220-460 (478)
57 COG3071 HemY Uncharacterized e 99.0 3.6E-06 7.8E-11 78.6 32.2 281 176-469 102-394 (400)
58 KOG0495 HAT repeat protein [RN 99.0 1.1E-05 2.3E-10 79.8 36.7 342 154-502 473-882 (913)
59 PF12569 NARP1: NMDA receptor- 99.0 1.4E-06 3E-11 87.7 31.4 287 203-498 12-332 (517)
60 PRK11189 lipoprotein NlpI; Pro 99.0 8E-07 1.7E-11 84.3 26.9 221 247-476 42-275 (296)
61 cd05804 StaR_like StaR_like; a 99.0 7.2E-06 1.6E-10 80.4 34.1 302 197-500 8-336 (355)
62 KOG0495 HAT repeat protein [RN 99.0 2.9E-05 6.3E-10 76.9 36.7 280 177-465 535-880 (913)
63 KOG1173 Anaphase-promoting com 98.9 3.4E-06 7.4E-11 82.0 28.5 282 194-483 243-534 (611)
64 PRK11189 lipoprotein NlpI; Pro 98.9 9.5E-07 2.1E-11 83.8 23.5 218 280-507 40-272 (296)
65 KOG0547 Translocase of outer m 98.9 1.3E-05 2.7E-10 76.8 29.7 194 299-497 363-563 (606)
66 KOG1915 Cell cycle control pro 98.9 2.8E-05 6.1E-10 74.1 31.8 313 176-500 159-536 (677)
67 cd05804 StaR_like StaR_like; a 98.8 3.3E-05 7.3E-10 75.7 33.3 259 202-464 50-335 (355)
68 PF12569 NARP1: NMDA receptor- 98.8 2.2E-05 4.7E-10 79.2 31.8 285 170-464 14-333 (517)
69 KOG1129 TPR repeat-containing 98.8 7.7E-07 1.7E-11 80.6 19.1 228 232-464 224-457 (478)
70 KOG1174 Anaphase-promoting com 98.8 2.7E-05 6E-10 73.0 29.0 304 151-464 185-499 (564)
71 PF12854 PPR_1: PPR repeat 98.8 1E-08 2.2E-13 61.7 4.3 29 398-426 4-32 (34)
72 PF12854 PPR_1: PPR repeat 98.8 9.7E-09 2.1E-13 61.8 4.0 32 361-392 2-33 (34)
73 PF04733 Coatomer_E: Coatomer 98.8 2.4E-07 5.1E-12 86.8 14.9 245 203-464 9-264 (290)
74 KOG1173 Anaphase-promoting com 98.7 2.1E-05 4.6E-10 76.6 27.8 264 230-502 244-520 (611)
75 COG3063 PilF Tfp pilus assembl 98.7 2.4E-05 5.2E-10 68.0 24.0 193 269-464 38-235 (250)
76 COG3063 PilF Tfp pilus assembl 98.7 3.4E-05 7.4E-10 67.0 24.3 200 298-501 37-237 (250)
77 KOG1174 Anaphase-promoting com 98.7 9.7E-05 2.1E-09 69.4 28.5 266 229-504 231-504 (564)
78 PF04733 Coatomer_E: Coatomer 98.7 1.9E-06 4.1E-11 80.8 17.9 223 197-430 37-265 (290)
79 KOG4340 Uncharacterized conser 98.7 1.2E-05 2.5E-10 72.3 21.4 291 162-463 12-337 (459)
80 KOG2047 mRNA splicing factor [ 98.6 0.00025 5.5E-09 70.3 30.9 296 197-502 104-508 (835)
81 KOG1915 Cell cycle control pro 98.6 0.00066 1.4E-08 65.1 33.4 317 176-503 91-469 (677)
82 PRK04841 transcriptional regul 98.6 0.00018 3.8E-09 80.0 34.6 303 200-502 414-762 (903)
83 KOG1070 rRNA processing protei 98.5 3.9E-05 8.5E-10 82.0 25.1 227 263-495 1455-1695(1710)
84 KOG1128 Uncharacterized conser 98.5 2.7E-05 5.8E-10 78.2 22.4 224 262-501 394-617 (777)
85 KOG2047 mRNA splicing factor [ 98.5 0.00092 2E-08 66.5 32.0 138 147-292 125-274 (835)
86 KOG1156 N-terminal acetyltrans 98.5 0.0018 3.9E-08 64.6 35.4 249 246-502 158-470 (700)
87 KOG3785 Uncharacterized conser 98.5 0.00027 5.8E-09 65.2 25.8 296 201-505 157-495 (557)
88 KOG4340 Uncharacterized conser 98.5 0.00011 2.4E-09 66.1 22.4 289 197-496 12-335 (459)
89 KOG0547 Translocase of outer m 98.5 2.2E-05 4.8E-10 75.2 19.1 216 244-464 339-565 (606)
90 KOG3785 Uncharacterized conser 98.5 0.00033 7.3E-09 64.6 25.7 326 162-498 58-455 (557)
91 TIGR03302 OM_YfiO outer membra 98.4 7.5E-05 1.6E-09 68.5 20.0 59 442-500 172-232 (235)
92 TIGR03302 OM_YfiO outer membra 98.4 0.00012 2.6E-09 67.1 21.2 170 293-465 30-232 (235)
93 KOG0985 Vesicle coat protein c 98.3 0.0023 4.9E-08 67.0 30.5 293 157-491 949-1269(1666)
94 KOG1070 rRNA processing protei 98.3 0.00046 1E-08 74.3 26.2 223 229-456 1457-1691(1710)
95 KOG3616 Selective LIM binding 98.3 0.00024 5.3E-09 71.3 22.8 188 275-494 741-931 (1636)
96 TIGR00756 PPR pentatricopeptid 98.3 8.3E-07 1.8E-11 54.1 3.7 33 298-330 2-34 (35)
97 KOG1914 mRNA cleavage and poly 98.3 0.0048 1E-07 60.5 34.6 130 367-499 367-500 (656)
98 KOG3081 Vesicle coat complex C 98.3 0.0012 2.6E-08 58.8 24.3 172 253-430 95-271 (299)
99 PRK04841 transcriptional regul 98.3 0.0029 6.2E-08 70.4 33.9 295 205-500 384-720 (903)
100 PLN02789 farnesyltranstransfer 98.3 0.0013 2.8E-08 62.7 26.6 118 241-360 47-171 (320)
101 KOG3081 Vesicle coat complex C 98.3 0.0029 6.3E-08 56.5 26.0 86 376-465 147-236 (299)
102 KOG3616 Selective LIM binding 98.2 0.00038 8.1E-09 70.0 22.5 168 303-495 739-906 (1636)
103 KOG1125 TPR repeat-containing 98.2 5.4E-05 1.2E-09 74.1 16.0 220 274-499 293-526 (579)
104 PRK15179 Vi polysaccharide bio 98.2 0.0011 2.4E-08 69.7 26.5 130 331-464 86-216 (694)
105 KOG0985 Vesicle coat protein c 98.2 0.0068 1.5E-07 63.6 30.9 138 266-422 1104-1241(1666)
106 TIGR00756 PPR pentatricopeptid 98.2 2.8E-06 6E-11 51.7 4.4 33 438-470 2-34 (35)
107 PRK14720 transcript cleavage f 98.2 0.0004 8.7E-09 73.8 22.6 232 230-482 31-268 (906)
108 PRK15179 Vi polysaccharide bio 98.2 0.00099 2.2E-08 70.0 25.3 143 262-407 82-228 (694)
109 COG5010 TadD Flp pilus assembl 98.2 0.00025 5.4E-09 63.0 17.5 120 301-423 105-224 (257)
110 PF13812 PPR_3: Pentatricopept 98.2 3.2E-06 7E-11 51.0 4.1 33 196-228 2-34 (34)
111 KOG1156 N-terminal acetyltrans 98.1 0.012 2.6E-07 59.0 33.1 361 130-503 8-437 (700)
112 KOG1128 Uncharacterized conser 98.1 8.3E-05 1.8E-09 74.8 15.7 212 199-429 402-615 (777)
113 PRK10370 formate-dependent nit 98.1 0.00069 1.5E-08 60.0 20.2 119 344-465 52-173 (198)
114 PLN02789 farnesyltranstransfer 98.1 0.0039 8.6E-08 59.4 26.4 212 196-413 38-267 (320)
115 KOG3617 WD40 and TPR repeat-co 98.1 0.00096 2.1E-08 68.1 22.7 289 158-496 724-1047(1416)
116 PRK10370 formate-dependent nit 98.1 0.00056 1.2E-08 60.5 19.2 120 309-431 52-174 (198)
117 PRK14720 transcript cleavage f 98.1 0.0011 2.4E-08 70.6 24.0 230 194-447 30-268 (906)
118 COG4783 Putative Zn-dependent 98.1 0.007 1.5E-07 58.8 26.5 137 306-465 316-454 (484)
119 COG4783 Putative Zn-dependent 98.1 0.007 1.5E-07 58.8 26.3 177 280-463 251-435 (484)
120 PRK15359 type III secretion sy 98.0 0.00043 9.3E-09 57.9 16.2 100 369-472 27-126 (144)
121 COG5010 TadD Flp pilus assembl 98.0 0.0018 4E-08 57.7 20.4 166 293-463 64-229 (257)
122 KOG1914 mRNA cleavage and poly 98.0 0.021 4.4E-07 56.2 29.3 342 156-505 16-469 (656)
123 KOG1125 TPR repeat-containing 98.0 0.0018 4E-08 63.8 20.9 246 244-494 298-565 (579)
124 KOG0624 dsRNA-activated protei 98.0 0.015 3.3E-07 53.8 27.8 287 204-503 47-373 (504)
125 PF01535 PPR: PPR repeat; Int 98.0 7E-06 1.5E-10 48.3 2.8 29 298-326 2-30 (31)
126 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00064 1.4E-08 66.2 17.4 121 371-498 174-295 (395)
127 PF08579 RPM2: Mitochondrial r 97.9 0.00017 3.6E-09 55.5 10.4 77 407-483 31-116 (120)
128 TIGR02552 LcrH_SycD type III s 97.9 0.0008 1.7E-08 55.6 15.6 104 368-475 19-122 (135)
129 PRK15359 type III secretion sy 97.9 0.00044 9.6E-09 57.8 13.9 89 271-360 29-121 (144)
130 KOG2376 Signal recognition par 97.9 0.031 6.6E-07 55.6 31.3 154 159-326 45-254 (652)
131 PF08579 RPM2: Mitochondrial r 97.9 0.00021 4.6E-09 54.9 10.5 77 336-412 30-115 (120)
132 PF01535 PPR: PPR repeat; Int 97.9 1.7E-05 3.6E-10 46.6 3.4 30 197-226 2-31 (31)
133 PF10037 MRP-S27: Mitochondria 97.9 0.00028 6E-09 69.0 13.4 122 293-414 63-186 (429)
134 PF10037 MRP-S27: Mitochondria 97.9 0.00023 4.9E-09 69.5 12.8 124 326-449 61-186 (429)
135 TIGR02552 LcrH_SycD type III s 97.9 0.00073 1.6E-08 55.8 14.2 90 269-359 20-113 (135)
136 KOG2376 Signal recognition par 97.8 0.042 9.1E-07 54.7 33.4 312 176-498 97-518 (652)
137 KOG4162 Predicted calmodulin-b 97.8 0.027 5.9E-07 57.7 26.7 208 256-465 313-542 (799)
138 KOG0548 Molecular co-chaperone 97.8 0.047 1E-06 53.8 29.2 198 299-502 227-457 (539)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00091 2E-08 65.1 15.2 121 270-393 173-295 (395)
140 PF09976 TPR_21: Tetratricopep 97.8 0.0012 2.6E-08 55.4 14.1 115 379-496 24-143 (145)
141 PF09976 TPR_21: Tetratricopep 97.8 0.0017 3.7E-08 54.4 15.0 126 333-462 14-144 (145)
142 PF06239 ECSIT: Evolutionarily 97.7 0.00067 1.5E-08 58.9 11.9 99 351-451 34-153 (228)
143 KOG3617 WD40 and TPR repeat-co 97.7 0.0054 1.2E-07 62.9 19.5 257 196-491 727-1013(1416)
144 PF06239 ECSIT: Evolutionarily 97.7 0.00068 1.5E-08 58.9 11.4 104 294-416 45-153 (228)
145 KOG4162 Predicted calmodulin-b 97.6 0.12 2.5E-06 53.3 38.0 342 155-502 318-785 (799)
146 KOG2053 Mitochondrial inherita 97.6 0.13 2.9E-06 53.8 31.4 223 165-396 15-256 (932)
147 KOG1127 TPR repeat-containing 97.6 0.036 7.9E-07 58.4 24.0 321 176-504 510-883 (1238)
148 KOG0624 dsRNA-activated protei 97.6 0.069 1.5E-06 49.7 25.5 64 155-224 64-135 (504)
149 cd00189 TPR Tetratricopeptide 97.5 0.0017 3.8E-08 48.9 11.2 91 407-499 6-96 (100)
150 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0027 5.8E-08 50.9 12.7 98 368-465 4-105 (119)
151 cd00189 TPR Tetratricopeptide 97.5 0.0018 4E-08 48.8 11.1 55 303-358 7-61 (100)
152 KOG2053 Mitochondrial inherita 97.5 0.11 2.4E-06 54.4 26.1 216 245-466 23-256 (932)
153 PF05843 Suf: Suppressor of fo 97.5 0.0024 5.1E-08 60.0 13.7 131 297-430 2-136 (280)
154 PF12895 Apc3: Anaphase-promot 97.4 0.00036 7.8E-09 52.3 5.7 80 414-496 2-83 (84)
155 PF14938 SNAP: Soluble NSF att 97.4 0.0064 1.4E-07 57.3 15.3 21 271-291 40-60 (282)
156 PF05843 Suf: Suppressor of fo 97.4 0.0062 1.3E-07 57.2 14.9 143 332-479 2-148 (280)
157 KOG3060 Uncharacterized conser 97.4 0.095 2.1E-06 46.8 23.3 82 310-393 100-181 (289)
158 KOG0548 Molecular co-chaperone 97.3 0.19 4.2E-06 49.6 26.5 318 170-501 12-422 (539)
159 KOG3060 Uncharacterized conser 97.3 0.11 2.3E-06 46.4 25.3 183 209-395 26-220 (289)
160 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.013 2.7E-07 46.9 14.1 98 333-430 4-105 (119)
161 PRK10866 outer membrane biogen 97.3 0.073 1.6E-06 48.7 20.0 177 302-499 38-240 (243)
162 PRK15363 pathogenicity island 97.2 0.023 4.9E-07 47.3 14.1 93 267-360 36-132 (157)
163 KOG1538 Uncharacterized conser 97.2 0.087 1.9E-06 53.0 20.2 88 366-464 747-845 (1081)
164 CHL00033 ycf3 photosystem I as 97.2 0.011 2.3E-07 51.0 12.8 94 368-462 37-139 (168)
165 PLN03088 SGT1, suppressor of 97.1 0.013 2.7E-07 57.2 14.5 86 377-464 13-98 (356)
166 PF14938 SNAP: Soluble NSF att 97.1 0.04 8.7E-07 51.9 17.5 33 281-323 30-62 (282)
167 PF12895 Apc3: Anaphase-promot 97.1 0.00084 1.8E-08 50.2 4.8 81 379-461 2-83 (84)
168 PRK02603 photosystem I assembl 97.1 0.032 6.8E-07 48.2 15.3 129 332-486 36-166 (172)
169 PRK02603 photosystem I assembl 97.1 0.027 5.9E-07 48.6 14.8 88 296-384 35-124 (172)
170 PRK10153 DNA-binding transcrip 97.0 0.18 3.9E-06 51.6 21.9 135 292-430 333-482 (517)
171 KOG2041 WD40 repeat protein [G 97.0 0.18 3.9E-06 51.3 20.8 194 197-425 694-902 (1189)
172 PRK10153 DNA-binding transcrip 97.0 0.085 1.8E-06 54.0 19.2 143 326-474 332-489 (517)
173 CHL00033 ycf3 photosystem I as 96.9 0.026 5.6E-07 48.5 13.2 94 331-425 35-137 (168)
174 PF12688 TPR_5: Tetratrico pep 96.9 0.06 1.3E-06 43.0 13.9 104 303-412 8-117 (120)
175 PRK10866 outer membrane biogen 96.9 0.29 6.3E-06 44.8 20.2 174 271-463 37-239 (243)
176 KOG1127 TPR repeat-containing 96.9 0.13 2.9E-06 54.4 19.5 209 282-496 474-696 (1238)
177 PLN03088 SGT1, suppressor of 96.9 0.024 5.2E-07 55.3 13.9 80 245-325 16-99 (356)
178 PF13525 YfiO: Outer membrane 96.8 0.14 3E-06 45.6 17.3 181 302-491 11-198 (203)
179 PF04840 Vps16_C: Vps16, C-ter 96.8 0.48 1E-05 45.2 25.8 103 371-493 182-284 (319)
180 PRK15363 pathogenicity island 96.7 0.14 3.1E-06 42.6 14.9 88 375-464 44-131 (157)
181 PF14559 TPR_19: Tetratricopep 96.6 0.0061 1.3E-07 43.3 5.7 50 309-359 4-53 (68)
182 PF14559 TPR_19: Tetratricopep 96.6 0.0075 1.6E-07 42.8 6.1 52 343-395 3-54 (68)
183 COG4700 Uncharacterized protei 96.6 0.4 8.7E-06 40.8 19.6 101 328-430 86-189 (251)
184 PF09205 DUF1955: Domain of un 96.5 0.25 5.3E-06 39.5 14.3 138 207-362 14-151 (161)
185 PF12688 TPR_5: Tetratrico pep 96.5 0.15 3.3E-06 40.7 13.7 89 374-462 9-101 (120)
186 PF12921 ATP13: Mitochondrial 96.5 0.041 8.8E-07 44.4 10.4 50 397-446 48-98 (126)
187 PF12921 ATP13: Mitochondrial 96.5 0.05 1.1E-06 43.9 10.8 83 331-413 2-100 (126)
188 KOG2796 Uncharacterized conser 96.5 0.16 3.4E-06 45.6 14.4 161 269-430 139-315 (366)
189 KOG2796 Uncharacterized conser 96.4 0.11 2.4E-06 46.6 13.4 133 332-465 178-315 (366)
190 PF13432 TPR_16: Tetratricopep 96.4 0.016 3.5E-07 40.6 6.9 24 439-462 34-57 (65)
191 PF04840 Vps16_C: Vps16, C-ter 96.4 0.91 2E-05 43.3 23.7 112 331-462 177-288 (319)
192 PF13432 TPR_16: Tetratricopep 96.4 0.015 3.3E-07 40.8 6.7 61 442-503 3-63 (65)
193 PRK10803 tol-pal system protei 96.4 0.082 1.8E-06 48.9 13.2 97 366-464 143-245 (263)
194 PF03704 BTAD: Bacterial trans 96.4 0.081 1.8E-06 44.2 12.3 69 369-438 65-138 (146)
195 PF13525 YfiO: Outer membrane 96.4 0.34 7.5E-06 43.0 16.6 172 273-455 12-197 (203)
196 KOG1920 IkappaB kinase complex 96.3 0.52 1.1E-05 51.2 19.6 21 407-427 971-991 (1265)
197 KOG0553 TPR repeat-containing 96.3 0.063 1.4E-06 49.1 11.2 98 341-443 91-189 (304)
198 PF13414 TPR_11: TPR repeat; P 96.3 0.02 4.3E-07 40.7 6.6 61 437-499 4-66 (69)
199 PRK10803 tol-pal system protei 96.1 0.1 2.2E-06 48.3 12.3 94 300-395 147-246 (263)
200 PF03704 BTAD: Bacterial trans 96.1 0.033 7.1E-07 46.6 8.4 54 269-322 65-122 (146)
201 PF13414 TPR_11: TPR repeat; P 96.1 0.027 5.9E-07 40.0 6.7 58 298-356 5-63 (69)
202 PF13281 DUF4071: Domain of un 96.0 1.5 3.3E-05 42.4 19.6 163 301-465 146-334 (374)
203 KOG3941 Intermediate in Toll s 95.9 0.055 1.2E-06 48.9 9.0 96 286-381 54-173 (406)
204 KOG0553 TPR repeat-containing 95.9 0.3 6.6E-06 44.8 13.7 92 244-338 94-189 (304)
205 KOG2280 Vacuolar assembly/sort 95.9 2.7 5.9E-05 43.7 25.4 110 367-495 685-794 (829)
206 KOG1130 Predicted G-alpha GTPa 95.8 0.13 2.8E-06 49.1 11.2 133 332-464 196-343 (639)
207 KOG3941 Intermediate in Toll s 95.8 0.1 2.3E-06 47.2 10.1 89 363-451 64-173 (406)
208 COG5107 RNA14 Pre-mRNA 3'-end 95.7 0.39 8.5E-06 46.6 13.9 125 232-359 399-530 (660)
209 KOG1538 Uncharacterized conser 95.5 0.63 1.4E-05 47.2 15.3 210 198-431 601-847 (1081)
210 PF13424 TPR_12: Tetratricopep 95.5 0.063 1.4E-06 39.2 6.8 26 403-428 7-32 (78)
211 COG5107 RNA14 Pre-mRNA 3'-end 95.5 2.7 5.9E-05 41.0 21.5 148 294-447 395-546 (660)
212 COG4235 Cytochrome c biogenesi 95.5 0.78 1.7E-05 42.4 14.9 101 293-395 153-256 (287)
213 PF13371 TPR_9: Tetratricopept 95.5 0.11 2.4E-06 37.3 7.9 54 410-464 4-57 (73)
214 PF13371 TPR_9: Tetratricopept 95.5 0.073 1.6E-06 38.2 6.9 61 443-504 2-62 (73)
215 smart00299 CLH Clathrin heavy 95.5 1.2 2.6E-05 36.7 15.8 126 335-483 11-137 (140)
216 PF04053 Coatomer_WDAD: Coatom 95.4 0.69 1.5E-05 46.3 15.6 155 205-391 271-427 (443)
217 PF13424 TPR_12: Tetratricopep 95.4 0.048 1E-06 39.9 5.7 26 368-393 7-32 (78)
218 KOG1585 Protein required for f 95.4 1.9 4.2E-05 38.5 17.4 215 187-424 23-250 (308)
219 KOG1130 Predicted G-alpha GTPa 95.3 0.19 4.1E-06 48.0 10.6 132 368-499 197-343 (639)
220 PLN03098 LPA1 LOW PSII ACCUMUL 95.2 0.41 8.8E-06 47.0 12.9 64 365-430 74-141 (453)
221 smart00299 CLH Clathrin heavy 95.1 0.82 1.8E-05 37.8 13.1 111 369-496 10-121 (140)
222 PF13170 DUF4003: Protein of u 95.1 1.8 4E-05 40.8 16.6 25 247-271 78-102 (297)
223 PF04053 Coatomer_WDAD: Coatom 95.0 0.58 1.3E-05 46.8 13.8 154 275-461 270-427 (443)
224 PF13170 DUF4003: Protein of u 95.0 1.1 2.3E-05 42.3 14.8 149 312-462 78-243 (297)
225 PF10300 DUF3808: Protein of u 95.0 2.4 5.1E-05 43.1 18.3 107 177-291 176-292 (468)
226 KOG2041 WD40 repeat protein [G 95.0 5.3 0.00011 41.3 23.3 296 164-482 709-1068(1189)
227 PLN03098 LPA1 LOW PSII ACCUMUL 94.9 0.41 8.9E-06 47.0 11.8 63 263-325 72-141 (453)
228 COG4235 Cytochrome c biogenesi 94.9 1.5 3.3E-05 40.5 14.8 98 262-360 152-256 (287)
229 PF10300 DUF3808: Protein of u 94.8 3.8 8.2E-05 41.7 19.3 134 145-292 189-331 (468)
230 PF07079 DUF1347: Protein of u 94.7 4.7 0.0001 39.6 21.7 262 241-506 16-333 (549)
231 PF09205 DUF1955: Domain of un 94.6 1.9 4.2E-05 34.6 13.0 137 342-503 13-152 (161)
232 COG4105 ComL DNA uptake lipopr 94.4 3.8 8.2E-05 37.1 20.9 57 304-360 42-100 (254)
233 KOG2114 Vacuolar assembly/sort 94.4 1.4 3E-05 46.2 14.6 52 303-355 404-455 (933)
234 COG4700 Uncharacterized protei 94.2 3.2 6.9E-05 35.6 19.3 126 294-423 87-215 (251)
235 PF08631 SPO22: Meiosis protei 94.1 5.1 0.00011 37.6 25.8 162 297-462 85-272 (278)
236 PRK15331 chaperone protein Sic 94.0 2.2 4.8E-05 35.9 12.6 87 376-464 47-133 (165)
237 PRK15331 chaperone protein Sic 93.7 3.7 8.1E-05 34.6 14.8 90 339-430 45-134 (165)
238 PF08631 SPO22: Meiosis protei 93.7 6.2 0.00013 37.0 25.9 162 332-496 85-271 (278)
239 KOG2280 Vacuolar assembly/sort 93.6 11 0.00023 39.6 19.9 117 326-461 679-795 (829)
240 PF07035 Mic1: Colon cancer-as 93.6 4.1 8.8E-05 34.6 15.8 133 352-500 15-149 (167)
241 PF13281 DUF4071: Domain of un 93.5 7.8 0.00017 37.7 19.0 159 271-431 146-335 (374)
242 KOG2610 Uncharacterized conser 93.5 4.6 0.0001 37.9 14.8 111 279-391 116-234 (491)
243 KOG1920 IkappaB kinase complex 93.4 9.6 0.00021 42.0 19.1 121 200-324 682-820 (1265)
244 KOG0543 FKBP-type peptidyl-pro 93.4 1.6 3.5E-05 42.0 12.3 88 272-360 214-320 (397)
245 COG1729 Uncharacterized protei 93.4 2 4.4E-05 39.2 12.3 97 368-465 144-244 (262)
246 KOG2610 Uncharacterized conser 92.8 3.4 7.4E-05 38.8 13.0 155 307-464 114-275 (491)
247 PF13512 TPR_18: Tetratricopep 92.8 2.8 6.1E-05 34.4 11.2 70 378-447 22-93 (142)
248 KOG4555 TPR repeat-containing 92.3 4.2 9.1E-05 32.7 11.1 87 275-361 52-145 (175)
249 COG0457 NrfG FOG: TPR repeat [ 92.2 7.6 0.00016 34.1 29.8 216 247-464 39-264 (291)
250 COG1729 Uncharacterized protei 92.2 4.3 9.3E-05 37.1 12.7 100 401-503 142-247 (262)
251 COG3629 DnrI DNA-binding trans 91.7 1.9 4.1E-05 40.0 10.1 56 268-323 155-214 (280)
252 KOG0550 Molecular chaperone (D 91.6 14 0.00031 35.9 18.9 49 378-426 261-312 (486)
253 COG3118 Thioredoxin domain-con 91.6 12 0.00025 34.9 16.1 121 306-429 144-264 (304)
254 KOG4555 TPR repeat-containing 91.6 4.7 0.0001 32.4 10.6 91 340-431 52-145 (175)
255 COG3629 DnrI DNA-binding trans 91.5 2.4 5.3E-05 39.2 10.6 77 333-410 155-236 (280)
256 PF04184 ST7: ST7 protein; In 91.3 17 0.00038 36.3 18.4 78 300-377 263-342 (539)
257 KOG0543 FKBP-type peptidyl-pro 91.1 9.6 0.00021 36.9 14.3 138 338-499 215-354 (397)
258 PF07035 Mic1: Colon cancer-as 91.0 9 0.00019 32.6 15.4 135 316-464 14-148 (167)
259 PF10602 RPN7: 26S proteasome 90.8 3.9 8.4E-05 35.4 10.8 62 403-464 38-101 (177)
260 KOG1941 Acetylcholine receptor 90.6 16 0.00034 35.0 14.8 220 244-463 19-273 (518)
261 KOG1585 Protein required for f 90.2 14 0.0003 33.4 15.0 204 266-495 31-251 (308)
262 PF13512 TPR_18: Tetratricopep 90.2 9.3 0.0002 31.4 12.1 102 401-503 11-131 (142)
263 KOG4570 Uncharacterized conser 90.1 3.9 8.5E-05 38.1 10.3 96 296-395 64-164 (418)
264 KOG2114 Vacuolar assembly/sort 90.0 9.3 0.0002 40.5 14.1 177 269-463 337-517 (933)
265 PF13176 TPR_7: Tetratricopept 90.0 0.75 1.6E-05 27.6 4.1 24 439-462 2-25 (36)
266 PF10602 RPN7: 26S proteasome 90.0 3.9 8.5E-05 35.3 10.1 58 299-356 39-98 (177)
267 PF02259 FAT: FAT domain; Int 89.9 19 0.00042 34.8 18.6 65 435-499 145-212 (352)
268 PF07079 DUF1347: Protein of u 89.9 21 0.00046 35.2 31.8 50 447-498 473-522 (549)
269 PF13929 mRNA_stabil: mRNA sta 89.9 17 0.00036 33.8 17.1 138 345-482 142-289 (292)
270 PF04184 ST7: ST7 protein; In 89.8 13 0.00029 37.1 14.3 61 404-464 262-323 (539)
271 COG1747 Uncharacterized N-term 89.1 27 0.00058 35.1 17.4 179 295-481 65-249 (711)
272 COG3118 Thioredoxin domain-con 89.0 19 0.00042 33.4 16.8 147 228-380 133-286 (304)
273 PF13428 TPR_14: Tetratricopep 89.0 1.5 3.3E-05 27.6 5.2 27 299-325 4-30 (44)
274 COG4649 Uncharacterized protei 88.9 14 0.00029 31.5 13.9 53 343-395 144-196 (221)
275 COG3947 Response regulator con 88.8 20 0.00043 33.3 15.7 72 298-370 281-357 (361)
276 KOG4570 Uncharacterized conser 88.4 8 0.00017 36.1 11.1 101 326-430 59-164 (418)
277 PF13176 TPR_7: Tetratricopept 88.1 1.1 2.3E-05 27.0 3.8 26 197-222 1-26 (36)
278 KOG1550 Extracellular protein 87.7 39 0.00084 35.3 18.3 179 281-468 227-429 (552)
279 PF09613 HrpB1_HrpK: Bacterial 87.5 16 0.00035 30.7 12.4 17 343-359 56-72 (160)
280 COG3898 Uncharacterized membra 87.2 30 0.00065 33.6 32.6 318 165-504 60-396 (531)
281 PF13428 TPR_14: Tetratricopep 87.1 2.1 4.6E-05 27.0 5.0 27 334-360 4-30 (44)
282 PF09613 HrpB1_HrpK: Bacterial 86.9 17 0.00038 30.5 13.1 105 277-386 21-129 (160)
283 TIGR02561 HrpB1_HrpK type III 86.4 17 0.00038 30.0 11.7 19 342-360 55-73 (153)
284 COG4105 ComL DNA uptake lipopr 86.3 26 0.00056 31.9 19.6 49 277-325 45-100 (254)
285 KOG0276 Vesicle coat complex C 85.0 14 0.0003 37.8 11.5 148 279-461 599-746 (794)
286 PF00637 Clathrin: Region in C 84.7 0.25 5.5E-06 41.0 -0.3 120 372-498 13-136 (143)
287 PF00515 TPR_1: Tetratricopept 84.7 2.5 5.5E-05 24.6 4.2 27 438-464 3-29 (34)
288 PF11207 DUF2989: Protein of u 84.3 11 0.00024 32.9 9.4 78 412-491 118-198 (203)
289 KOG1941 Acetylcholine receptor 83.8 42 0.00092 32.2 16.7 222 206-428 17-273 (518)
290 cd00923 Cyt_c_Oxidase_Va Cytoc 83.7 9.4 0.0002 28.9 7.5 44 350-393 26-69 (103)
291 COG4649 Uncharacterized protei 83.3 28 0.0006 29.7 14.7 123 342-464 69-195 (221)
292 PF13374 TPR_10: Tetratricopep 83.3 3.1 6.8E-05 25.4 4.5 28 437-464 3-30 (42)
293 cd00923 Cyt_c_Oxidase_Va Cytoc 82.6 9.7 0.00021 28.8 7.2 61 313-374 24-84 (103)
294 PF13374 TPR_10: Tetratricopep 82.5 2.8 6E-05 25.7 4.0 28 196-223 3-30 (42)
295 PRK11906 transcriptional regul 82.3 57 0.0012 32.6 16.3 127 196-323 252-399 (458)
296 KOG0276 Vesicle coat complex C 82.0 25 0.00055 36.0 11.9 132 267-426 615-746 (794)
297 PF11207 DUF2989: Protein of u 81.4 18 0.0004 31.6 9.6 72 348-420 123-197 (203)
298 PF07719 TPR_2: Tetratricopept 80.9 4.3 9.3E-05 23.5 4.2 26 439-464 4-29 (34)
299 KOG0550 Molecular chaperone (D 80.9 59 0.0013 31.9 19.9 161 228-395 166-350 (486)
300 PF02284 COX5A: Cytochrome c o 80.3 24 0.00052 27.1 9.0 46 349-394 28-73 (108)
301 PF13431 TPR_17: Tetratricopep 80.1 2.7 5.8E-05 24.9 3.0 22 265-286 12-33 (34)
302 COG4785 NlpI Lipoprotein NlpI, 79.9 44 0.00094 29.7 14.7 175 279-465 78-266 (297)
303 PF00515 TPR_1: Tetratricopept 79.5 5.1 0.00011 23.3 4.2 31 472-502 2-32 (34)
304 PF00637 Clathrin: Region in C 79.2 0.59 1.3E-05 38.8 -0.1 128 337-486 13-140 (143)
305 KOG1586 Protein required for f 79.2 48 0.001 29.8 15.4 29 376-404 164-192 (288)
306 PF13762 MNE1: Mitochondrial s 79.2 34 0.00073 28.3 10.0 51 329-379 77-128 (145)
307 PF13929 mRNA_stabil: mRNA sta 78.9 56 0.0012 30.5 17.3 64 361-424 197-261 (292)
308 PF02259 FAT: FAT domain; Int 78.8 65 0.0014 31.1 22.2 64 366-429 146-212 (352)
309 PF11838 ERAP1_C: ERAP1-like C 78.2 64 0.0014 30.7 17.5 145 347-497 146-305 (324)
310 PF04097 Nic96: Nup93/Nic96; 77.9 87 0.0019 33.2 15.4 219 197-430 114-356 (613)
311 PF07163 Pex26: Pex26 protein; 77.5 27 0.00057 32.3 9.7 80 273-354 90-181 (309)
312 COG0457 NrfG FOG: TPR repeat [ 77.1 48 0.001 28.7 30.1 199 297-498 60-263 (291)
313 KOG4234 TPR repeat-containing 76.9 21 0.00046 31.2 8.5 90 374-465 103-197 (271)
314 PF13431 TPR_17: Tetratricopep 76.8 4.3 9.3E-05 24.0 3.2 24 293-316 10-33 (34)
315 KOG1550 Extracellular protein 76.4 1E+02 0.0023 32.2 23.3 245 211-466 228-505 (552)
316 PF07719 TPR_2: Tetratricopept 76.1 7.3 0.00016 22.4 4.2 32 472-503 2-33 (34)
317 PF13762 MNE1: Mitochondrial s 76.1 44 0.00095 27.7 11.9 36 357-392 28-65 (145)
318 KOG2297 Predicted translation 76.0 70 0.0015 30.0 12.9 18 368-385 323-340 (412)
319 KOG1586 Protein required for f 75.3 63 0.0014 29.1 14.0 17 448-464 166-182 (288)
320 TIGR02508 type_III_yscG type I 75.2 35 0.00075 26.1 8.3 59 273-334 46-105 (115)
321 KOG2297 Predicted translation 74.5 77 0.0017 29.8 19.5 18 438-455 323-340 (412)
322 COG4785 NlpI Lipoprotein NlpI, 74.2 64 0.0014 28.7 16.3 170 181-360 88-266 (297)
323 COG2909 MalT ATP-dependent tra 73.5 1.4E+02 0.0031 32.4 26.7 219 278-496 427-684 (894)
324 PF07721 TPR_4: Tetratricopept 72.5 7.6 0.00016 21.2 3.3 22 269-290 4-25 (26)
325 PF02284 COX5A: Cytochrome c o 72.4 42 0.00091 25.8 8.8 45 248-292 27-71 (108)
326 PRK11619 lytic murein transgly 72.3 1.4E+02 0.0031 31.8 29.2 230 263-498 126-373 (644)
327 KOG1464 COP9 signalosome, subu 72.1 82 0.0018 29.0 16.0 57 336-392 150-217 (440)
328 PF06552 TOM20_plant: Plant sp 71.4 60 0.0013 28.0 9.8 44 452-503 96-139 (186)
329 TIGR02561 HrpB1_HrpK type III 71.4 59 0.0013 27.0 11.8 47 279-325 23-73 (153)
330 COG3898 Uncharacterized membra 71.2 1.1E+02 0.0023 30.0 31.0 274 172-465 98-392 (531)
331 PF07163 Pex26: Pex26 protein; 71.0 64 0.0014 29.9 10.4 89 301-389 88-181 (309)
332 PF13181 TPR_8: Tetratricopept 70.6 12 0.00026 21.6 4.2 27 438-464 3-29 (34)
333 TIGR02508 type_III_yscG type I 70.5 45 0.00098 25.5 7.8 51 410-466 48-98 (115)
334 COG4455 ImpE Protein of avirul 69.1 37 0.0008 30.2 8.2 54 301-355 6-59 (273)
335 PRK09687 putative lyase; Provi 68.4 1.1E+02 0.0023 28.8 27.6 71 314-394 192-262 (280)
336 PF14689 SPOB_a: Sensor_kinase 68.3 15 0.00032 25.4 4.7 29 470-498 22-50 (62)
337 TIGR03504 FimV_Cterm FimV C-te 68.1 10 0.00022 24.0 3.5 24 477-500 5-28 (44)
338 PHA02875 ankyrin repeat protei 68.1 1.3E+02 0.0029 29.8 14.6 148 272-436 71-230 (413)
339 PRK11906 transcriptional regul 68.0 1.4E+02 0.003 30.0 16.6 161 297-461 252-432 (458)
340 COG4455 ImpE Protein of avirul 67.7 37 0.0008 30.2 7.9 70 270-339 5-80 (273)
341 PRK15180 Vi polysaccharide bio 67.6 62 0.0013 32.3 10.2 123 338-464 296-419 (831)
342 PF13174 TPR_6: Tetratricopept 67.5 9.6 0.00021 21.6 3.3 23 442-464 6-28 (33)
343 TIGR03504 FimV_Cterm FimV C-te 67.0 15 0.00033 23.2 4.2 23 442-464 5-27 (44)
344 PF10366 Vps39_1: Vacuolar sor 66.4 30 0.00065 27.0 6.7 27 438-464 41-67 (108)
345 COG3947 Response regulator con 65.5 1.2E+02 0.0026 28.4 16.4 41 313-355 150-190 (361)
346 KOG1464 COP9 signalosome, subu 65.3 1.1E+02 0.0025 28.1 15.6 168 260-427 20-217 (440)
347 COG5159 RPN6 26S proteasome re 65.0 1E+02 0.0022 28.7 10.5 17 276-292 13-29 (421)
348 PRK15180 Vi polysaccharide bio 65.0 1.5E+02 0.0033 29.7 12.3 124 303-430 296-420 (831)
349 PF14669 Asp_Glu_race_2: Putat 63.8 1E+02 0.0022 26.9 14.3 56 441-496 137-206 (233)
350 KOG2066 Vacuolar assembly/sort 63.7 2.1E+02 0.0044 30.8 13.6 165 273-464 363-533 (846)
351 PF10579 Rapsyn_N: Rapsyn N-te 63.5 24 0.00051 25.7 5.0 17 439-455 46-62 (80)
352 PF13181 TPR_8: Tetratricopept 63.3 22 0.00048 20.3 4.4 31 472-502 2-32 (34)
353 PF11848 DUF3368: Domain of un 62.9 32 0.00069 22.2 5.2 33 447-479 13-45 (48)
354 KOG0991 Replication factor C, 62.8 1.2E+02 0.0026 27.5 11.6 79 318-399 181-271 (333)
355 PF11663 Toxin_YhaV: Toxin wit 62.6 8 0.00017 31.2 2.8 28 345-374 109-136 (140)
356 KOG2063 Vacuolar assembly/sort 60.3 2.7E+02 0.0059 30.7 16.5 187 298-484 506-745 (877)
357 PF10579 Rapsyn_N: Rapsyn N-te 59.8 32 0.0007 25.0 5.2 47 448-494 18-66 (80)
358 PRK09687 putative lyase; Provi 59.7 1.5E+02 0.0033 27.7 26.9 136 330-481 141-277 (280)
359 KOG0686 COP9 signalosome, subu 59.1 1.9E+02 0.0041 28.5 14.6 173 267-443 151-351 (466)
360 PF11846 DUF3366: Domain of un 56.7 54 0.0012 28.6 7.5 32 433-464 141-172 (193)
361 KOG4648 Uncharacterized conser 56.5 62 0.0014 30.8 7.8 52 340-393 106-158 (536)
362 PF11848 DUF3368: Domain of un 56.5 46 0.001 21.5 5.2 23 347-369 18-40 (48)
363 KOG2908 26S proteasome regulat 55.8 1.3E+02 0.0028 28.7 9.8 21 272-292 81-101 (380)
364 KOG4077 Cytochrome c oxidase, 55.8 89 0.0019 25.1 7.4 43 351-393 69-111 (149)
365 KOG4077 Cytochrome c oxidase, 54.7 50 0.0011 26.5 5.9 59 419-478 67-125 (149)
366 PF04762 IKI3: IKI3 family; I 54.5 3.5E+02 0.0077 30.4 14.7 206 271-497 699-927 (928)
367 KOG4648 Uncharacterized conser 54.0 45 0.00098 31.7 6.5 90 374-473 105-200 (536)
368 PHA02875 ankyrin repeat protei 53.7 2.4E+02 0.0051 28.0 15.0 210 140-367 10-231 (413)
369 PF11663 Toxin_YhaV: Toxin wit 53.4 14 0.00031 29.8 2.8 30 449-480 108-137 (140)
370 cd08819 CARD_MDA5_2 Caspase ac 52.9 94 0.002 23.2 6.8 38 278-315 48-85 (88)
371 KOG0403 Neoplastic transformat 52.7 2.5E+02 0.0055 28.0 16.9 25 299-323 348-372 (645)
372 PF11846 DUF3366: Domain of un 52.6 71 0.0015 27.9 7.6 31 363-393 141-171 (193)
373 PRK10564 maltose regulon perip 52.0 29 0.00063 32.5 5.0 43 397-439 252-295 (303)
374 KOG2659 LisH motif-containing 51.7 1.8E+02 0.0039 26.1 9.7 97 363-461 23-128 (228)
375 COG5159 RPN6 26S proteasome re 50.3 2.2E+02 0.0047 26.6 10.6 127 302-428 9-152 (421)
376 COG0735 Fur Fe2+/Zn2+ uptake r 50.1 1E+02 0.0023 25.5 7.7 49 389-438 9-57 (145)
377 PF07575 Nucleopor_Nup85: Nup8 49.3 1.1E+02 0.0023 32.2 9.5 62 365-428 404-465 (566)
378 PF14689 SPOB_a: Sensor_kinase 49.3 38 0.00083 23.3 4.2 16 374-389 31-46 (62)
379 PF10366 Vps39_1: Vacuolar sor 48.8 1.3E+02 0.0028 23.5 7.9 26 334-359 42-67 (108)
380 COG2178 Predicted RNA-binding 48.5 1.9E+02 0.0041 25.3 10.8 68 247-323 19-96 (204)
381 cd00280 TRFH Telomeric Repeat 48.3 1.4E+02 0.003 25.9 7.9 48 382-429 85-139 (200)
382 KOG4234 TPR repeat-containing 48.3 1.1E+02 0.0024 27.0 7.5 84 276-360 105-197 (271)
383 PF14853 Fis1_TPR_C: Fis1 C-te 47.3 75 0.0016 21.1 5.1 35 442-478 7-41 (53)
384 smart00028 TPR Tetratricopepti 47.1 44 0.00095 17.7 3.9 25 439-463 4-28 (34)
385 KOG0687 26S proteasome regulat 46.8 2.7E+02 0.0058 26.6 14.3 92 403-496 106-206 (393)
386 PF13934 ELYS: Nuclear pore co 46.3 2.2E+02 0.0049 25.6 13.0 91 243-342 90-183 (226)
387 PF13934 ELYS: Nuclear pore co 46.3 2.2E+02 0.0049 25.6 11.0 107 333-450 78-186 (226)
388 COG2976 Uncharacterized protei 46.2 2.1E+02 0.0045 25.2 13.1 54 410-465 135-188 (207)
389 COG2909 MalT ATP-dependent tra 46.0 4.4E+02 0.0096 28.9 27.1 198 307-504 426-651 (894)
390 PF11817 Foie-gras_1: Foie gra 45.3 1.3E+02 0.0028 27.6 8.3 58 441-498 183-245 (247)
391 PRK10564 maltose regulon perip 44.9 36 0.00079 31.8 4.5 41 294-334 254-295 (303)
392 KOG2396 HAT (Half-A-TPR) repea 44.8 3.6E+02 0.0077 27.5 17.7 236 179-429 303-558 (568)
393 PF10345 Cohesin_load: Cohesin 44.8 4.1E+02 0.0089 28.2 30.2 187 196-392 31-251 (608)
394 KOG2300 Uncharacterized conser 44.7 3.5E+02 0.0077 27.4 18.5 119 206-324 334-473 (629)
395 COG5108 RPO41 Mitochondrial DN 44.6 1.3E+02 0.0029 31.5 8.6 92 301-395 33-132 (1117)
396 cd08819 CARD_MDA5_2 Caspase ac 44.3 1.3E+02 0.0029 22.4 6.9 36 343-383 48-83 (88)
397 KOG4507 Uncharacterized conser 44.1 3.1E+02 0.0067 28.5 10.9 149 225-377 566-721 (886)
398 PF04190 DUF410: Protein of un 43.0 2.7E+02 0.006 25.7 16.2 156 307-499 1-169 (260)
399 PF09670 Cas_Cas02710: CRISPR- 42.9 3.4E+02 0.0074 26.8 11.5 56 304-360 139-198 (379)
400 COG5108 RPO41 Mitochondrial DN 42.8 1.7E+02 0.0036 30.8 8.9 75 336-413 33-115 (1117)
401 PHA03100 ankyrin repeat protei 42.6 3.8E+02 0.0082 27.2 12.3 212 201-435 38-277 (480)
402 PF04097 Nic96: Nup93/Nic96; 42.5 4.5E+02 0.0097 28.0 20.7 87 271-360 263-356 (613)
403 PF10255 Paf67: RNA polymerase 42.1 1.5E+02 0.0032 29.5 8.4 57 372-428 128-191 (404)
404 KOG2063 Vacuolar assembly/sort 42.1 5.2E+02 0.011 28.7 13.5 166 333-498 506-711 (877)
405 PF10345 Cohesin_load: Cohesin 41.6 4.6E+02 0.0099 27.8 35.6 190 160-357 30-251 (608)
406 PF10475 DUF2450: Protein of u 41.3 3.1E+02 0.0067 25.8 11.4 24 398-421 194-217 (291)
407 KOG0890 Protein kinase of the 40.8 8.1E+02 0.018 30.5 18.9 147 303-460 1390-1542(2382)
408 smart00638 LPD_N Lipoprotein N 40.6 4.6E+02 0.0099 27.5 25.6 64 158-227 308-372 (574)
409 TIGR01228 hutU urocanate hydra 39.7 2.5E+02 0.0054 28.4 9.4 70 208-291 207-281 (545)
410 PF09477 Type_III_YscG: Bacter 39.7 1.8E+02 0.0039 22.7 9.3 75 247-326 22-99 (116)
411 PF09477 Type_III_YscG: Bacter 39.7 1.8E+02 0.004 22.7 8.6 30 433-464 68-97 (116)
412 KOG4567 GTPase-activating prot 39.6 1.9E+02 0.0041 27.3 8.1 70 351-425 263-342 (370)
413 COG0790 FOG: TPR repeat, SEL1 38.8 3.3E+02 0.0071 25.4 22.1 149 278-432 53-222 (292)
414 PF02847 MA3: MA3 domain; Int 38.4 1.2E+02 0.0026 23.6 6.1 21 272-292 8-28 (113)
415 COG0735 Fur Fe2+/Zn2+ uptake r 38.4 1.8E+02 0.0039 24.1 7.3 63 352-415 7-69 (145)
416 PRK09857 putative transposase; 38.4 2.5E+02 0.0054 26.5 9.2 65 370-435 210-274 (292)
417 PF12862 Apc5: Anaphase-promot 37.8 1.7E+02 0.0037 21.9 6.8 23 442-464 47-69 (94)
418 PF11817 Foie-gras_1: Foie gra 37.8 2.4E+02 0.0052 25.8 8.9 57 336-392 183-244 (247)
419 PF11768 DUF3312: Protein of u 36.9 4.9E+02 0.011 26.9 13.2 57 269-325 411-473 (545)
420 KOG0403 Neoplastic transformat 36.6 4.6E+02 0.0099 26.4 16.9 24 198-221 348-371 (645)
421 KOG3807 Predicted membrane pro 36.2 4E+02 0.0086 25.5 13.3 109 344-465 229-340 (556)
422 COG2178 Predicted RNA-binding 35.8 3E+02 0.0066 24.1 10.5 17 448-464 133-149 (204)
423 PF04090 RNA_pol_I_TF: RNA pol 35.7 3.1E+02 0.0067 24.2 10.7 124 366-505 41-173 (199)
424 PRK11619 lytic murein transgly 35.3 5.9E+02 0.013 27.3 29.0 23 478-500 414-436 (644)
425 PF02847 MA3: MA3 domain; Int 35.2 1.5E+02 0.0033 22.9 6.3 19 303-321 9-27 (113)
426 PF08311 Mad3_BUB1_I: Mad3/BUB 35.0 2.4E+02 0.0052 22.7 7.9 18 442-459 105-122 (126)
427 PF09454 Vps23_core: Vps23 cor 34.5 82 0.0018 21.9 4.0 47 365-412 7-53 (65)
428 PRK11639 zinc uptake transcrip 33.9 2.6E+02 0.0056 23.8 7.9 65 390-455 15-79 (169)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 33.9 2.5E+02 0.0054 22.6 9.8 61 227-291 63-124 (126)
430 PF14561 TPR_20: Tetratricopep 33.4 2.1E+02 0.0045 21.4 7.7 37 289-325 15-51 (90)
431 COG2812 DnaX DNA polymerase II 33.2 5.6E+02 0.012 26.5 11.1 37 149-185 189-225 (515)
432 PF04910 Tcf25: Transcriptiona 33.1 4.7E+02 0.01 25.6 19.7 57 338-394 110-167 (360)
433 PRK13342 recombination factor 33.1 5.1E+02 0.011 25.9 18.3 41 300-340 231-274 (413)
434 PF00244 14-3-3: 14-3-3 protei 32.9 3.7E+02 0.0081 24.4 9.2 58 302-359 7-65 (236)
435 PF06552 TOM20_plant: Plant sp 32.9 3.3E+02 0.0071 23.6 10.3 41 348-396 97-137 (186)
436 PRK13342 recombination factor 32.4 5.2E+02 0.011 25.8 19.1 32 415-446 244-275 (413)
437 PF12862 Apc5: Anaphase-promot 31.8 2.2E+02 0.0048 21.3 6.9 19 375-393 50-68 (94)
438 COG5187 RPN7 26S proteasome re 31.8 4.4E+02 0.0096 24.8 12.9 71 195-265 115-189 (412)
439 COG5187 RPN7 26S proteasome re 31.7 4.4E+02 0.0096 24.8 11.8 67 366-432 115-186 (412)
440 PF11838 ERAP1_C: ERAP1-like C 31.3 4.6E+02 0.0099 24.8 18.7 108 382-494 146-260 (324)
441 cd07153 Fur_like Ferric uptake 31.2 1.3E+02 0.0028 23.5 5.3 48 406-453 5-52 (116)
442 TIGR01228 hutU urocanate hydra 31.2 3.5E+02 0.0075 27.5 8.9 22 481-502 403-424 (545)
443 PF12796 Ank_2: Ankyrin repeat 30.7 1.2E+02 0.0025 22.1 4.7 10 390-399 76-85 (89)
444 PRK11639 zinc uptake transcrip 30.1 3.2E+02 0.0068 23.3 7.8 58 358-416 18-75 (169)
445 PF09454 Vps23_core: Vps23 cor 29.7 90 0.0019 21.8 3.5 46 437-483 9-54 (65)
446 KOG4279 Serine/threonine prote 29.7 7.5E+02 0.016 26.8 11.9 224 251-503 145-398 (1226)
447 PRK09857 putative transposase; 29.6 4.9E+02 0.011 24.6 9.7 66 404-470 209-274 (292)
448 PRK09462 fur ferric uptake reg 29.4 3.3E+02 0.0071 22.5 7.7 63 390-453 6-69 (148)
449 PRK14956 DNA polymerase III su 29.4 6.4E+02 0.014 25.9 11.2 19 247-265 264-282 (484)
450 PRK08691 DNA polymerase III su 28.7 6.8E+02 0.015 27.1 11.1 86 382-470 180-279 (709)
451 PF07840 FadR_C: FadR C-termin 28.2 1E+02 0.0022 26.2 4.2 15 277-291 129-143 (164)
452 KOG0890 Protein kinase of the 27.9 1.3E+03 0.028 28.9 26.1 63 437-502 1671-1733(2382)
453 PRK08691 DNA polymerase III su 27.8 5.5E+02 0.012 27.7 10.3 74 324-400 193-279 (709)
454 PRK14951 DNA polymerase III su 27.8 7.3E+02 0.016 26.4 11.3 85 383-470 186-284 (618)
455 PF12926 MOZART2: Mitotic-spin 27.6 2.6E+02 0.0056 20.8 8.0 43 457-499 29-71 (88)
456 cd00280 TRFH Telomeric Repeat 27.5 4.2E+02 0.009 23.1 8.1 64 347-413 85-155 (200)
457 COG2976 Uncharacterized protei 27.4 4.3E+02 0.0094 23.3 14.3 88 339-431 97-189 (207)
458 PF01475 FUR: Ferric uptake re 26.7 1.3E+02 0.0028 23.8 4.5 44 442-485 13-56 (120)
459 PF12968 DUF3856: Domain of Un 26.7 2.2E+02 0.0047 22.8 5.4 61 401-461 55-125 (144)
460 PF09868 DUF2095: Uncharacteri 26.7 2.9E+02 0.0062 21.8 5.9 24 373-396 68-91 (128)
461 KOG1498 26S proteasome regulat 26.6 6.3E+02 0.014 24.9 14.7 165 309-480 25-257 (439)
462 PHA03100 ankyrin repeat protei 26.5 6.2E+02 0.014 25.6 10.8 228 252-503 49-308 (480)
463 KOG4567 GTPase-activating prot 26.3 5.7E+02 0.012 24.3 10.1 71 386-461 263-343 (370)
464 cd07153 Fur_like Ferric uptake 26.1 2.2E+02 0.0048 22.1 5.8 44 303-346 7-50 (116)
465 KOG0292 Vesicle coat complex C 26.1 2.2E+02 0.0048 31.1 7.0 161 300-502 624-784 (1202)
466 PHA02798 ankyrin-like protein; 26.1 3.9E+02 0.0085 27.3 9.1 150 281-435 17-175 (489)
467 COG4715 Uncharacterized conser 26.1 7.6E+02 0.016 25.6 20.3 196 267-464 304-526 (587)
468 PHA02798 ankyrin-like protein; 26.1 6.2E+02 0.014 25.8 10.6 121 313-436 86-214 (489)
469 COG4003 Uncharacterized protei 26.0 1.2E+02 0.0025 22.2 3.5 25 477-501 37-61 (98)
470 PF02607 B12-binding_2: B12 bi 26.0 1.8E+02 0.004 20.7 4.9 33 309-341 14-46 (79)
471 PRK05414 urocanate hydratase; 25.6 5.6E+02 0.012 26.3 9.2 70 208-291 216-290 (556)
472 KOG2066 Vacuolar assembly/sort 25.6 8.9E+02 0.019 26.3 20.8 29 196-224 393-421 (846)
473 PRK09462 fur ferric uptake reg 25.4 3.9E+02 0.0084 22.1 7.6 34 382-415 33-66 (148)
474 PF10255 Paf67: RNA polymerase 25.4 6.8E+02 0.015 24.9 11.5 55 269-323 125-191 (404)
475 PF01475 FUR: Ferric uptake re 25.0 2.1E+02 0.0046 22.5 5.6 45 301-345 12-56 (120)
476 COG4003 Uncharacterized protei 24.9 2.8E+02 0.0061 20.3 5.6 25 372-396 37-61 (98)
477 cd07229 Pat_TGL3_like Triacylg 24.9 2.8E+02 0.006 27.5 7.2 131 253-383 101-254 (391)
478 KOG0686 COP9 signalosome, subu 24.7 7E+02 0.015 24.8 13.7 63 297-360 151-216 (466)
479 PRK13341 recombination factor 24.6 9.4E+02 0.02 26.2 17.6 148 313-464 171-360 (725)
480 KOG4521 Nuclear pore complex, 24.4 1.1E+03 0.024 27.1 13.8 122 332-460 984-1126(1480)
481 KOG2471 TPR repeat-containing 24.2 1.3E+02 0.0027 30.5 4.6 46 436-483 336-381 (696)
482 PF10475 DUF2450: Protein of u 24.0 6.1E+02 0.013 23.8 12.8 116 335-461 102-222 (291)
483 PHA02878 ankyrin repeat protei 23.9 7.7E+02 0.017 25.0 12.9 271 203-506 42-334 (477)
484 smart00777 Mad3_BUB1_I Mad3/BU 23.6 2.8E+02 0.006 22.4 5.8 55 195-255 69-123 (125)
485 PF07678 A2M_comp: A-macroglob 23.5 3.9E+02 0.0085 24.3 7.7 18 481-498 202-219 (246)
486 TIGR03184 DNA_S_dndE DNA sulfu 23.4 1.7E+02 0.0036 22.8 4.3 36 450-485 61-98 (105)
487 PF03745 DUF309: Domain of unk 23.1 2.6E+02 0.0056 19.2 5.8 13 449-461 12-24 (62)
488 PRK07003 DNA polymerase III su 23.1 1E+03 0.022 26.2 15.5 73 324-399 193-278 (830)
489 smart00544 MA3 Domain in DAP-5 22.2 3.7E+02 0.0081 20.7 10.1 60 370-431 6-67 (113)
490 cd07229 Pat_TGL3_like Triacylg 22.2 4.7E+02 0.01 25.9 8.1 36 457-492 172-207 (391)
491 COG1747 Uncharacterized N-term 22.1 8.8E+02 0.019 25.0 24.6 163 263-430 63-234 (711)
492 COG5210 GTPase-activating prot 22.0 7.8E+02 0.017 25.3 10.3 117 387-505 363-480 (496)
493 PF07678 A2M_comp: A-macroglob 22.0 4.1E+02 0.0089 24.2 7.5 33 444-476 200-237 (246)
494 PF07064 RIC1: RIC1; InterPro 21.6 6.5E+02 0.014 23.3 16.6 64 442-505 185-254 (258)
495 COG0790 FOG: TPR repeat, SEL1 21.5 6.6E+02 0.014 23.3 24.6 148 244-397 54-222 (292)
496 PF09868 DUF2095: Uncharacteri 21.4 3E+02 0.0066 21.6 5.2 22 305-326 70-91 (128)
497 smart00544 MA3 Domain in DAP-5 21.2 3.9E+02 0.0085 20.6 10.0 62 198-261 5-67 (113)
498 PHA02989 ankyrin repeat protei 21.1 6.3E+02 0.014 25.8 9.5 193 280-483 14-227 (494)
499 smart00386 HAT HAT (Half-A-TPR 20.9 1.6E+02 0.0035 16.0 3.9 11 383-393 4-14 (33)
500 PF08870 DUF1832: Domain of un 20.4 2.5E+02 0.0055 22.1 4.9 89 383-485 6-96 (113)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.2e-57 Score=480.12 Aligned_cols=347 Identities=15% Similarity=0.154 Sum_probs=335.3
Q ss_pred CCCCHHHHHHHHHHHhcCCc--hHHHHHHHh--hccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHH
Q 047221 156 VSLSNASVIEILRVLNSEKV--SALCFLKYM--REIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEK 231 (509)
Q Consensus 156 ~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~--~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 231 (509)
..|+..+|+.+|.+|++.|+ .|.++|+.| .++.|+.. +||.||.+|++.|++++|.++|++|.+.|+.||..
T Consensus 433 ~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~----tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv 508 (1060)
T PLN03218 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCK----LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH 508 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH
Confidence 45999999999999999996 899999999 66666666 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-------CCCHHHHHHHHH
Q 047221 232 AFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT-------ERKVSYYNILIK 304 (509)
Q Consensus 232 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~~~~~li~ 304 (509)
+|+.+|.+|+. .|++++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++| .||.++|++||.
T Consensus 509 TynaLI~gy~k-~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ 587 (1060)
T PLN03218 509 TFGALIDGCAR-AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587 (1060)
T ss_pred HHHHHHHHHHH-CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 99999996664 5559999999999999999999999999999999999999999999988 479999999999
Q ss_pred HHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 047221 305 EMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDV 384 (509)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 384 (509)
+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 385 AFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 385 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
|.++|++|.+.|+.||..+|++||.+|+++|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|.+
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 047221 465 NGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSSVE 507 (509)
Q Consensus 465 ~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 507 (509)
.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.|+..
T Consensus 748 ~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 748 LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 9999999999999999999999999999999999999999864
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-56 Score=478.28 Aligned_cols=376 Identities=13% Similarity=0.152 Sum_probs=349.7
Q ss_pred CChHhHHHHHHHHhcCC-----chHHHHHHhCCCCCCHHHHHHHHHHHhcCCc--hHHHHHHHh--hccCCCCccChhHH
Q 047221 128 ATPKQVSEIIELLRSGD-----SETESKLLSMSVSLSNASVIEILRVLNSEKV--SALCFLKYM--REIMPEFYKNSDIC 198 (509)
Q Consensus 128 ~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~--~~~~p~~~~~~~~~ 198 (509)
++...+..++..+.+.+ ..++..|.+.|+.||..+|+.+|.+|++.|+ .|.++|+.| .++.|+.. +|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdvv----Ty 510 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVH----TF 510 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHH----HH
Confidence 56667777777776533 3577788889999999999999999999996 899999999 56666655 99
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHH
Q 047221 199 SLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQ--VGGSCLVSGVRALIEMF 276 (509)
Q Consensus 199 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~ 276 (509)
|.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|+.. |++++|.++|++|.+ .|+.||..+|++||.+|
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~-G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS-GAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999966655 559999999999986 68999999999999999
Q ss_pred HhcCCHHHHHHHHHHc-----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHH
Q 047221 277 SVLGLYEMAKYVIKKT-----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADAC 351 (509)
Q Consensus 277 ~~~g~~~~A~~~~~~m-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 351 (509)
+++|++++|.++|++| .++..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 9999999999999998 57889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 352 ELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 352 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----c-------------------CCHH
Q 047221 432 KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHT----S-------------------HQEH 488 (509)
Q Consensus 432 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~-------------------g~~~ 488 (509)
+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||..+|++++..|.+ + +..+
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~ 829 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTS 829 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHH
Confidence 9999999999999999999999999999999999999999999999976542 1 2346
Q ss_pred HHHHHHHHHHhCCCCCCccC
Q 047221 489 MAKCLSSRYSSLSLGSSVEA 508 (509)
Q Consensus 489 ~a~~~~~~m~~~~~~~~~~~ 508 (509)
+|..+|++|.+.|+.|+..|
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHH
Confidence 89999999999999999654
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-55 Score=467.01 Aligned_cols=366 Identities=14% Similarity=0.117 Sum_probs=341.5
Q ss_pred CCChHhHHHHHHHHhcCC-----chHHHHHHhCCCCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHH
Q 047221 127 YATPKQVSEIIELLRSGD-----SETESKLLSMSVSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICS 199 (509)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~ 199 (509)
.++...+..++..+.+.+ ..++..+.+.|+.||..+++.++..|++.|+ .|.++|+.| |. +|..+||
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~--~~~~t~n 193 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PE--RNLASWG 193 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcC----CC--CCeeeHH
Confidence 457778888888877632 4577788888999999999999999999996 899999999 32 3455999
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 047221 200 LVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVL 279 (509)
Q Consensus 200 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (509)
++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.++...+ ..+.+.+++..+.+.|+.+|..+|++||++|+++
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 272 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG-SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999776554 5999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047221 280 GLYEMAKYVIKKT-ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358 (509)
Q Consensus 280 g~~~~A~~~~~~m-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 358 (509)
|++++|.++|++| ++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+++.+|.
T Consensus 273 g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~ 352 (697)
T PLN03081 273 GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352 (697)
T ss_pred CCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 9999999999999 589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047221 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNML 438 (509)
Q Consensus 359 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 438 (509)
+.|+.||..+|++||++|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..|
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T 428 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT 428 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 999999999999999999999999999999999964 6999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH-CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 047221 439 YSLLASLHDKNNNPVMAKNVLSEMMK-NGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSSV 506 (509)
Q Consensus 439 ~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 506 (509)
|+.++.+|++.|++++|.++|++|.+ .|+.|+..+|++++++|++.|++++|.+++++| ++.|+.
T Consensus 429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~ 494 (697)
T PLN03081 429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTV 494 (697)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCH
Confidence 99999999999999999999999986 699999999999999999999999999998765 455654
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-53 Score=458.44 Aligned_cols=351 Identities=14% Similarity=0.109 Sum_probs=297.5
Q ss_pred chHHHHHHhCCCCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047221 145 SETESKLLSMSVSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFN 222 (509)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 222 (509)
.+++..+.+.|+.|+..+++.+|.+|++.|+ .|.++|+.| |. +|.++||++|.+|++.|++++|.++|++|.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~--~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PR--RDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CC--CCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3456667777888899999999999999996 899999999 33 455699999999999999999999999999
Q ss_pred hCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCHHHHHH
Q 047221 223 VYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT-ERKVSYYNI 301 (509)
Q Consensus 223 ~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~~ 301 (509)
+.|+.||..||+.++.+|... ++.+.+.+++..|.+.|+.||..+||+||.+|+++|++++|.++|++| .+|.++||+
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~ 359 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELL-GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTA 359 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhc-CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHH
Confidence 999999999999999966654 559999999999999999999999999999999999999999999999 589999999
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047221 302 LIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK 381 (509)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 381 (509)
||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++++.|.+.|+.|+..+||+||.+|++.|+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 439 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999988888888888888888
Q ss_pred hHHHHHHHHHHHHC------------------------------CCCCCHHHHH--------------------------
Q 047221 382 FDVAFNFFNQMVKR------------------------------GLQPRLATHA-------------------------- 405 (509)
Q Consensus 382 ~~~a~~~~~~m~~~------------------------------g~~p~~~~~~-------------------------- 405 (509)
+++|.++|++|.+. ++.||..||+
T Consensus 440 ~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 440 IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 88888887776432 2344443333
Q ss_pred ---------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHH
Q 047221 406 ---------AFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRR 476 (509)
Q Consensus 406 ---------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 476 (509)
+||++|+++|++++|.++|+.| .+|..+||+||.+|+++|+.++|+++|++|.+.|+.||..||+.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 2333344444444444444433 56778888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH-hCCCCCCcc
Q 047221 477 VLKHLHTSHQEHMAKCLSSRYS-SLSLGSSVE 507 (509)
Q Consensus 477 ll~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~ 507 (509)
++.+|.+.|++++|.++|++|. +.|+.|+.+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~ 626 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchH
Confidence 8888888888888888888888 678888754
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-52 Score=443.03 Aligned_cols=343 Identities=15% Similarity=0.128 Sum_probs=322.1
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHhcCCc--hHHHHHHHh--hccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047221 149 SKLLSM-SVSLSNASVIEILRVLNSEKV--SALCFLKYM--REIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNV 223 (509)
Q Consensus 149 ~~l~~~-~~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~--~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 223 (509)
..|... +..|+..+|+.+|.+|++.+. .|.+++..| .|+.|+.. +||.||.+|++.|+++.|.++|++|.+
T Consensus 111 ~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~----~~n~Li~~y~k~g~~~~A~~lf~~m~~ 186 (697)
T PLN03081 111 EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY----MMNRVLLMHVKCGMLIDARRLFDEMPE 186 (697)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH----HHHHHHHHHhcCCCHHHHHHHHhcCCC
Confidence 344443 478999999999999999885 799999999 67777666 999999999999999999999999964
Q ss_pred CCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-----CCCHHH
Q 047221 224 YQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT-----ERKVSY 298 (509)
Q Consensus 224 ~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~~~~ 298 (509)
||..+|+.++.+++.. |+.++|.++|++|.+.|..|+..+|+.++.+|++.|..+.+.+++..+ .+|..+
T Consensus 187 ----~~~~t~n~li~~~~~~-g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~ 261 (697)
T PLN03081 187 ----RNLASWGTIIGGLVDA-GNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFV 261 (697)
T ss_pred ----CCeeeHHHHHHHHHHC-cCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcccee
Confidence 7999999999977655 559999999999999999999999999999999999999999998876 589999
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR 378 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 378 (509)
||+||.+|++.|++++|.++|++|. .+|.++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~ 337 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999997 579999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 047221 379 VGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNV 458 (509)
Q Consensus 379 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 458 (509)
.|++++|.+++.+|.+.|+.||..+|++||++|+++|++++|.++|++|.+ ||..+||+||.+|+++|+.++|+++
T Consensus 338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~l 413 (697)
T PLN03081 338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEM 413 (697)
T ss_pred ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999964 6899999999999999999999999
Q ss_pred HHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCccC
Q 047221 459 LSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSS-LSLGSSVEA 508 (509)
Q Consensus 459 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~ 508 (509)
|++|.+.|+.||..||++++.+|.+.|++++|.++|++|.+ .|+.|+.++
T Consensus 414 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~ 464 (697)
T PLN03081 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464 (697)
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc
Confidence 99999999999999999999999999999999999999985 799998754
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.7e-51 Score=442.63 Aligned_cols=345 Identities=14% Similarity=0.100 Sum_probs=322.4
Q ss_pred hHHHHHHhCCCCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047221 146 ETESKLLSMSVSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNV 223 (509)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 223 (509)
+++..+.+.|..||..+++.+|.+|++.|+ +|.++|+.|. .|+ ..+||++|.+|++.|++++|.++|++|.+
T Consensus 309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d----~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKD----AVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCC----eeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 456667777888899999999999999886 7999999993 244 44999999999999999999999999999
Q ss_pred CCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCHHHHHHH
Q 047221 224 YQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT-ERKVSYYNIL 302 (509)
Q Consensus 224 ~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~~l 302 (509)
.|+.||..||+.++.+|+. .+++++|.++++.|.+.|+.++..+||+||++|+++|++++|.++|++| ++|.++||.+
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~-~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~m 461 (857)
T PLN03077 383 DNVSPDEITIASVLSACAC-LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSI 461 (857)
T ss_pred hCCCCCceeHHHHHHHHhc-cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHH
Confidence 9999999999999996654 5559999999999999999999999999999999999999999999999 6899999999
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKF 382 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 382 (509)
|.+|++.|+.++|+++|++|.. ++.||..||+.+|.+|++.|+++.+.+++..|.+.|+.+|..++|+||++|+++|++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 9999999999999999999986 689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 047221 383 DVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 383 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 462 (509)
++|.++|++| .+|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 541 ~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 541 NYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 9999999987 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred H-HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 047221 463 M-KNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSSV 506 (509)
Q Consensus 463 ~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 506 (509)
. +.|+.|+..+|++++++|++.|++++|++++++|. ++|+.
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~ 657 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP 657 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH
Confidence 9 67999999999999999999999999999999983 56654
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=5e-20 Score=183.18 Aligned_cols=295 Identities=12% Similarity=0.114 Sum_probs=209.5
Q ss_pred HHhccCCHHHHHHHHHHhhhCCCccCH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc
Q 047221 204 NCGRLDDYETMRQLLNDFNVYQVCLNE-KAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCL---VSGVRALIEMFSVL 279 (509)
Q Consensus 204 ~~~~~g~~~~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~ 279 (509)
.+...|++++|...|+++.+.+ |+. .++..+.. ++...|++++|..+++.+.+.+..++ ..++..+...|.+.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGN-LFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHH-HHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 4456677777777777776542 333 34444444 33344457777777777766432221 24567778888888
Q ss_pred CCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCChHHHH
Q 047221 280 GLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI----TLTYNYVLGVLCKNGQDADAC 351 (509)
Q Consensus 280 g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~ 351 (509)
|+++.|..+|+++ +.+..+++.++..+.+.|++++|.+.++.+.+.+..++ ...+..+...+.+.|++++|.
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 8888888888876 24567788888888888888888888888877643222 123456667778888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 352 ELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 352 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
+.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+..
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888887753 234556777778888888888888888888765322224567788888888888888888888887763
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCc
Q 047221 432 KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHT---SHQEHMAKCLSSRYSSLSLGSSV 506 (509)
Q Consensus 432 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~~~~~ 506 (509)
|+...+..++..+.+.|++++|.++++++.+. .|+..++..++..+.. .|+.+++..++++|.+.+++|+.
T Consensus 280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 55556677888888888888888888888764 5888888877777664 45788888888888877766653
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.9e-19 Score=179.06 Aligned_cols=312 Identities=14% Similarity=0.059 Sum_probs=250.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcCCchHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccC-
Q 047221 151 LLSMSVSLSNASVIEILRVLNSEKVSALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLN- 229 (509)
Q Consensus 151 l~~~~~~~~~~~~~~ll~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~- 229 (509)
..+.........+..+........++|+..|..+....|+ +..+|..+...+.+.|++++|..+++.+...+..++
T Consensus 28 ~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 104 (389)
T PRK11788 28 QQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE 104 (389)
T ss_pred hhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH
Confidence 3444445555555555554445556899999999666674 455899999999999999999999999987643222
Q ss_pred --HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCC------HHH
Q 047221 230 --EKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERK------VSY 298 (509)
Q Consensus 230 --~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~------~~~ 298 (509)
...+..+...+ ...|++++|..+|+.+.+.. +.+..+++.++.+|.+.|++++|.+.++.+ .++ ...
T Consensus 105 ~~~~~~~~La~~~-~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 105 QRLLALQELGQDY-LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 23455666644 45566999999999998753 456788999999999999999999999987 221 224
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR 378 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 378 (509)
|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...|.+.|++++|.++++++.+.+......+++.++.+|.+
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 261 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA 261 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 5678888999999999999999998764 334667888889999999999999999999876433234678899999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---CCChHHH
Q 047221 379 VGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDK---NNNPVMA 455 (509)
Q Consensus 379 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a 455 (509)
.|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++
T Consensus 262 ~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 262 LGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred cCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhH
Confidence 99999999999999876 466667789999999999999999999998876 6899999988888775 5689999
Q ss_pred HHHHHHHHHCCCCcCHH
Q 047221 456 KNVLSEMMKNGLRPNVS 472 (509)
Q Consensus 456 ~~~~~~m~~~g~~p~~~ 472 (509)
+.++++|.+.+++|++.
T Consensus 338 ~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 338 LLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 99999999988877765
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.88 E-value=1.1e-18 Score=192.47 Aligned_cols=329 Identities=11% Similarity=0.044 Sum_probs=172.4
Q ss_pred CHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHH
Q 047221 159 SNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFL 236 (509)
Q Consensus 159 ~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 236 (509)
+...+..+...+...|+ +|..+|+.+....|+ +...+..++..+.+.|++++|..+++++.... +.+...|..+
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 607 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ---EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLML 607 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 34455555555555554 566666666333342 22355566666666666666666666664432 2344455555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCc
Q 047221 237 PVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDF 312 (509)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~ 312 (509)
..++. ..+++++|...++.+.+.. +.+...+..+..+|.+.|++++|..+|+++ +.+..+|..++..+...|++
T Consensus 608 ~~~~~-~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 608 GRAQL-AAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 54333 3344666666666665433 234445556666666666666666666554 23455555555555555555
Q ss_pred cHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047221 313 KGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQM 392 (509)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 392 (509)
++|.++++.+.+.+ +.+...+..+...+.+.|++++|.+.|+.+.+.+ |+..++..+..++.+.|++++|.+.++++
T Consensus 686 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 686 ESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred HHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55555555555443 3344445555555555555555555555554432 22234444444444555555555555444
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--------------------------------CCCHHHHH
Q 047221 393 VKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYK--------------------------------SSSNMLYS 440 (509)
Q Consensus 393 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--------------------------------~p~~~~~~ 440 (509)
.+.. +.+...++.+...|.+.|++++|.+.|+++.+... .-+..++.
T Consensus 763 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 763 LKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHH
Confidence 4432 22344444444444444555555444444443321 11233444
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 441 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
.+...+...|++++|.++++++.+.+.. +..++..+..++.+.|++++|.+++++|.
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555556666666666666666654332 55566666666666666666666666654
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.87 E-value=5.2e-18 Score=187.00 Aligned_cols=332 Identities=10% Similarity=-0.049 Sum_probs=202.7
Q ss_pred CHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHH
Q 047221 159 SNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFL 236 (509)
Q Consensus 159 ~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l 236 (509)
+...+..+...+...|+ +|.+.|+.+....|+ +...+..+...+...|++++|.++|+++.... +.+..++..+
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD---FFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 34455555555555554 566666666444443 22355556666666666666666666665432 1234444444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCc
Q 047221 237 PVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDF 312 (509)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~ 312 (509)
...+. ..|+.++|..+++.+.+.+ +.+...+..++..|.+.|++++|..+++++ +.+...|..+..+|.+.|++
T Consensus 540 ~~~~~-~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYL-RTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 44333 3444666666666665543 334455566666666666666666666665 34566667777777777777
Q ss_pred cHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047221 313 KGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQM 392 (509)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 392 (509)
++|.+.|+++.+.. +.+...+..+..+|.+.|++++|..+++++.+.. +.+..++..+...+...|++++|..+++.+
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777666543 3345556666666777777777777777666542 334566666666677777777777777766
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHH
Q 047221 393 VKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVS 472 (509)
Q Consensus 393 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 472 (509)
.+.+ +.+...+..+...|.+.|++++|.+.|+.+...+ |+..++..++..+.+.|++++|.+.++++.+. .+.+..
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~ 771 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAV 771 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH
Confidence 6553 3355566666667777777777777777666553 33355556666777777777777777776654 233556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 473 VYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 473 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
.+..+...|.+.|++++|.+.++++.+..+
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 666666677777777777777777766544
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=8.1e-15 Score=153.65 Aligned_cols=325 Identities=10% Similarity=0.002 Sum_probs=209.9
Q ss_pred HHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhc
Q 047221 166 ILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSK 243 (509)
Q Consensus 166 ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~ 243 (509)
++..+.+.|+ +|+.+++.+....|+ +...+..++.+....|++++|...|+++... .|+.......+......
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~---~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~ 122 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN---GRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC---chhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH
Confidence 3344444453 677777777555554 2235555556666778888888888877554 34433333333334445
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHH
Q 047221 244 ALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLL 319 (509)
Q Consensus 244 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (509)
.|+.++|...++...+.. +.+...+..+...|...|++++|...++.+ +.+...+..+ ..+.+.|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 556888888888777643 334566777777788888888887777664 2333344333 3467778888888888
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHHC
Q 047221 320 VEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDV----AFNFFNQMVKR 395 (509)
Q Consensus 320 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~ 395 (509)
+.+.+..-.++...+..+..++.+.|++++|...+++..+.. +.+...+..+...+.+.|++++ |...|++..+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 777655323344444555667777888888888888777653 3346666777777777787775 67777777765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHH-H
Q 047221 396 GLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSV-Y 474 (509)
Q Consensus 396 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~ 474 (509)
. +.+...+..+...+.+.|++++|...+++..+... .+...+..+...+.+.|++++|++.++++... .|+... +
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~ 355 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWN 355 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH
Confidence 2 23456777777778888888888888877776532 23445666777777888888888888777763 344333 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 475 RRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 475 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
..+..++...|+.++|...+++..+..+
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P 383 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARA 383 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence 3345567777888888888877765543
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=3.3e-14 Score=149.11 Aligned_cols=298 Identities=13% Similarity=0.037 Sum_probs=239.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMF 276 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (509)
-.-.++..+.+.|++++|..+++.............+...+ .....|+.++|...++.+.+.. +.+...+..+...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~--~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l 120 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVI--SPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVL 120 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhh--hHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 34456778889999999999999987765444333444333 3344667999999999999864 44567788999999
Q ss_pred HhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHH
Q 047221 277 SVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACE 352 (509)
Q Consensus 277 ~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 352 (509)
...|++++|...+++. +.+...|..+...+...|++++|...++.+....- .+...+..+ ..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999986 45688899999999999999999999998876532 223333333 45888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHH
Q 047221 353 LLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED----AYKYVVLSA 428 (509)
Q Consensus 353 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~ 428 (509)
+++.+.+....++...+..+..++.+.|++++|...++++.+.. +.+...+..+...|...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 99998877434455556666788899999999999999999764 4467788889999999999986 899999988
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 429 DKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP-NVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 429 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
+... .+...+..+...+.+.|++++|+..+++..+. .| +...+..+..++.+.|++++|...++++.+.++.
T Consensus 278 ~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 278 QFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred hhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 7642 35678899999999999999999999999885 34 4556777888999999999999999999877554
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.73 E-value=1.8e-13 Score=143.78 Aligned_cols=340 Identities=11% Similarity=-0.032 Sum_probs=256.8
Q ss_pred CCCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCC------
Q 047221 155 SVSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQV------ 226 (509)
Q Consensus 155 ~~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~------ 226 (509)
...|+...+..+-.++...|+ +|++.++....+.|+ +...|..+..+|...|++++|+.-|......+-
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~---~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~ 231 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD---YSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS 231 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH
Confidence 355676777777777777775 899999999777775 445899999999999999999876644322110
Q ss_pred ----------------------ccC----HHHHHHH---------------------------HHHH-----HhccCCHH
Q 047221 227 ----------------------CLN----EKAFGFL---------------------------PVLI-----SSKALTKK 248 (509)
Q Consensus 227 ----------------------~p~----~~~~~~l---------------------------l~~~-----~~~~~~~~ 248 (509)
.|. ....... +..+ ....+.++
T Consensus 232 ~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~ 311 (615)
T TIGR00990 232 AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE 311 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence 010 0000000 0000 01123588
Q ss_pred HHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 047221 249 GIWRVVEVLNQVG--GSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEM 322 (509)
Q Consensus 249 ~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (509)
+|...|+...+.+ .+.....++.+...+...|++++|...|++. +.+..+|..+...+...|++++|+..|++.
T Consensus 312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999988765 2334567889999999999999999999985 344778999999999999999999999999
Q ss_pred HHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 047221 323 RQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLA 402 (509)
Q Consensus 323 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 402 (509)
.+.. +-+..+|..+...|...|++++|...|++..+.. +.+...+..+...+.+.|++++|+..|++..+.. +-+..
T Consensus 392 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~ 468 (615)
T TIGR00990 392 LKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPD 468 (615)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChH
Confidence 8764 4457889999999999999999999999998863 3356778888899999999999999999988752 34578
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHH
Q 047221 403 THAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN------MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRR 476 (509)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 476 (509)
.++.+...|...|++++|.+.|++..+.....+. ..++..+..+...|++++|.+++++..... .-+...+..
T Consensus 469 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~ 547 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVAT 547 (615)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence 8999999999999999999999998765322111 122222333445799999999999988753 223456888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 477 VLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 477 ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
+...+.+.|++++|.+.+++..+..
T Consensus 548 la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 548 MAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHh
Confidence 9999999999999999999987653
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.71 E-value=1.2e-14 Score=139.91 Aligned_cols=329 Identities=11% Similarity=0.007 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHH
Q 047221 160 NASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLP 237 (509)
Q Consensus 160 ~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll 237 (509)
..+|..+-+.+...|+ +|+.+++.+..++|+ .++.|..+..++...|+.+.|.+.|.+..+. .|+.....+-+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~---fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPK---FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch---hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcch
Confidence 4566667777777775 788888888777775 3358888888888888888888888877543 35544444444
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcC--------------------------------CCC-CHHHHHHHHHHHHhcCCHHH
Q 047221 238 VLISSKALTKKGIWRVVEVLNQVG--------------------------------GSC-LVSGVRALIEMFSVLGLYEM 284 (509)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~m~~~g--------------------------------~~~-~~~~~~~li~~~~~~g~~~~ 284 (509)
.-.....|++++|...+.+..+.. +.| -...|-.|.+.|...+.++.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 333344444555555444444321 112 12345555555555556666
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047221 285 AKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI-TLTYNYVLGVLCKNGQDADACELLEEMLG 359 (509)
Q Consensus 285 A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 359 (509)
|...+.+. +...+.+..|...|...|++|-|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.+.....
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 65555542 223556666666666667777777777766654 333 56777777777777888888777777766
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-H
Q 047221 360 RNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR-LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN-M 437 (509)
Q Consensus 360 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~ 437 (509)
. .+--....+.|-..|...|.+++|..+|....+- .|. ...+|.|...|.++|++++|...+++... ++|+. .
T Consensus 349 l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd 423 (966)
T KOG4626|consen 349 L-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD 423 (966)
T ss_pred h-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH
Confidence 4 2223556777777777778888888877776643 333 45677788888888888888888877654 34543 4
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV-SVYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 438 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
.|+.+...|-..|+.+.|++.+.+.+. +.|.. ..++.|...|...|...+|++-+++..+..+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 677888888888888888888888776 45543 4677788888888888888888887765543
No 15
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=5.4e-13 Score=123.50 Aligned_cols=341 Identities=15% Similarity=0.169 Sum_probs=250.9
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcCC-----------------------------chHHHHHHHhhccCCCCccChhH
Q 047221 147 TESKLLSMSVSLSNASVIEILRVLNSEK-----------------------------VSALCFLKYMREIMPEFYKNSDI 197 (509)
Q Consensus 147 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~-----------------------------~~A~~~~~~~~~~~p~~~~~~~~ 197 (509)
+...|+..|+..++..-..+++..+-.. +.|.-+|+.. | ++..+
T Consensus 137 lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~----P---KT~et 209 (625)
T KOG4422|consen 137 LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL----P---KTDET 209 (625)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc----C---CCchh
Confidence 5567777788888877777766543111 1233222222 4 46679
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047221 198 CSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFS 277 (509)
Q Consensus 198 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 277 (509)
|..||.++|+--..+.|.+++++-.....+.+..+||.+|.+.. +....+++.+|......||..|+|+++.+.+
T Consensus 210 ~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~a 284 (625)
T KOG4422|consen 210 VSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-----YSVGKKLVAEMISQKMTPNLFTFNALLSCAA 284 (625)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH-----hhccHHHHHHHHHhhcCCchHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999654 4444889999999999999999999999999
Q ss_pred hcCCHHHHHHHHHH----c-----CCCHHHHHHHHHHHHhcCCccH-HHHHHHHHHHc--C--CC---C-ChHHHHHHHH
Q 047221 278 VLGLYEMAKYVIKK----T-----ERKVSYYNILIKEMCRRCDFKG-PRDLLVEMRQV--G--CE---P-ITLTYNYVLG 339 (509)
Q Consensus 278 ~~g~~~~A~~~~~~----m-----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g--~~---p-~~~t~~~li~ 339 (509)
+.|+++.|++.+-+ | +|...+|..+|..+++.++..+ |..++.+.... | ++ | |..-|...|+
T Consensus 285 kfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~ 364 (625)
T KOG4422|consen 285 KFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMS 364 (625)
T ss_pred HhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHH
Confidence 99999888766544 3 6899999999999999888644 55555555532 2 22 2 4556678889
Q ss_pred HHHhcCChHHHHHHHHHHHhC----CCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047221 340 VLCKNGQDADACELLEEMLGR----NCHPDA---ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412 (509)
Q Consensus 340 ~~~~~g~~~~a~~~~~~m~~~----g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (509)
.|.+..+.+.|.++..-+... -+.|+. .-|..+....|+....+.....|+.|+-.-+-|+..+...++++..
T Consensus 365 Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~ 444 (625)
T KOG4422|consen 365 ICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALD 444 (625)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHh
Confidence 999999999999997755432 133442 3466778888999999999999999998888899999999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-Ch--------H-----HHHHHH-------HHHHHCCCCcCH
Q 047221 413 IFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNN-NP--------V-----MAKNVL-------SEMMKNGLRPNV 471 (509)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------~-----~a~~~~-------~~m~~~g~~p~~ 471 (509)
-.|.++-..++|.+++..|...+...-.-++..+++.. +. . -|..++ .+|....+.|
T Consensus 445 v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~-- 522 (625)
T KOG4422|consen 445 VANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPA-- 522 (625)
T ss_pred hcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCCh--
Confidence 99999999999999998876655555555555555443 11 0 011111 1223333333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 472 SVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 472 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
...+.++-.+.+.|..++|.+++..+.+.+
T Consensus 523 t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 523 TSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 345566666778888888888888775443
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.66 E-value=3.9e-12 Score=133.66 Aligned_cols=323 Identities=14% Similarity=0.028 Sum_probs=236.7
Q ss_pred HHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccC-HHHHHHHHHHHHhccC
Q 047221 169 VLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLN-EKAFGFLPVLISSKAL 245 (509)
Q Consensus 169 ~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~ll~~~~~~~~ 245 (509)
.+.+.|+ .|++.|+......|+.. .|..+..+|.+.|++++|++.++...+. .|+ ...|..+-.++ ...|
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~~~p~~~----~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~-~~lg 208 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIECKPDPV----YYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAY-DGLG 208 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCchH----HHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH-HHcC
Confidence 3445554 89999999977777644 8999999999999999999999998765 354 44555555544 4455
Q ss_pred CHHHHHHHHHHHHHcCCC--------------------------------CCHHHHHHH---------------------
Q 047221 246 TKKGIWRVVEVLNQVGGS--------------------------------CLVSGVRAL--------------------- 272 (509)
Q Consensus 246 ~~~~a~~~~~~m~~~g~~--------------------------------~~~~~~~~l--------------------- 272 (509)
++++|...+......+.. +........
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDE 288 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccc
Confidence 588887655443221100 000000000
Q ss_pred ------HHHH------HhcCCHHHHHHHHHHc-------CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC-hH
Q 047221 273 ------IEMF------SVLGLYEMAKYVIKKT-------ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI-TL 332 (509)
Q Consensus 273 ------i~~~------~~~g~~~~A~~~~~~m-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 332 (509)
+..+ ...+++++|.+.|++. +.+...|+.+...+...|++++|+..|++..+. .|+ ..
T Consensus 289 ~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~ 366 (615)
T TIGR00990 289 ETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQ 366 (615)
T ss_pred ccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHH
Confidence 0000 1235788899988875 123567888889999999999999999998875 444 56
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (509)
.|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.. +.+...+..+..++.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 88888899999999999999999988763 3457788889999999999999999999998763 335777888999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc-----CHH-HHHHHHHHHHhcCC
Q 047221 413 IFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP-----NVS-VYRRVLKHLHTSHQ 486 (509)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~-t~~~ll~~~~~~g~ 486 (509)
+.|++++|+..|++..+.. .-+...|+.+...+...|++++|++.|++.....-.. +.. .+...+..+...|+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999987653 3356788899999999999999999999988742111 111 11222223344699
Q ss_pred HHHHHHHHHHHHhCCCC
Q 047221 487 EHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 487 ~~~a~~~~~~m~~~~~~ 503 (509)
+++|.+++++..+.++.
T Consensus 524 ~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 524 FIEAENLCEKALIIDPE 540 (615)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999998776543
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.65 E-value=3.2e-12 Score=143.23 Aligned_cols=317 Identities=12% Similarity=0.018 Sum_probs=206.7
Q ss_pred hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCcc-CHHHHHHH---------H--HHHHhc
Q 047221 176 SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCL-NEKAFGFL---------P--VLISSK 243 (509)
Q Consensus 176 ~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~l---------l--~~~~~~ 243 (509)
+|+..|+......|+ +...+..+...+.+.|++++|+..|++..+..-.. ....+..+ + ......
T Consensus 287 ~A~~~l~~aL~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~ 363 (1157)
T PRK11447 287 KAIPELQQAVRANPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK 363 (1157)
T ss_pred HHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 789999888666674 45688888899999999999999999887653221 11112111 1 112334
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHH-----------------
Q 047221 244 ALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNIL----------------- 302 (509)
Q Consensus 244 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~l----------------- 302 (509)
.+++++|...+++..+.. +.+...+..+..+|...|++++|++.|++. +.+...+..+
T Consensus 364 ~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~ 442 (1157)
T PRK11447 364 ANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIA 442 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 566999999999888764 345667778888999999999999998875 2233333222
Q ss_pred -------------------------HHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047221 303 -------------------------IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEM 357 (509)
Q Consensus 303 -------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 357 (509)
...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...++++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334456788888888888887653 224556677788888888888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---------------------------------------CCC
Q 047221 358 LGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR---------------------------------------GLQ 398 (509)
Q Consensus 358 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------------------g~~ 398 (509)
.+.. +.+...+..+...+.+.++.++|...++.+... ..+
T Consensus 522 l~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p 600 (1157)
T PRK11447 522 AQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP 600 (1157)
T ss_pred HHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 7642 122333322222333344444444433322110 112
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc-CHHHHHHH
Q 047221 399 PRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP-NVSVYRRV 477 (509)
Q Consensus 399 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l 477 (509)
.+...+..+...|.+.|+.++|+..|++..+.. ..+...+..++..|...|++++|++.++...+. .| +..++..+
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~l 677 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRV 677 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHH
Confidence 344455667777777888888888888777653 235566777778888888888888888876653 33 33455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 478 LKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 478 l~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
..++...|++++|.++++++.+..
T Consensus 678 a~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 678 ALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHhhhC
Confidence 667777888888888888877654
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.65 E-value=1.2e-11 Score=132.50 Aligned_cols=331 Identities=12% Similarity=0.010 Sum_probs=214.0
Q ss_pred HHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHH
Q 047221 162 SVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVL 239 (509)
Q Consensus 162 ~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~ 239 (509)
.+..+-..+...++ +|.++++......|+ +...+..+...+.+.|++++|+..+++..+. .|+...+..+..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~- 124 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ---NDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAY- 124 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH-
Confidence 45555555655564 677777777555564 2335667777777888888888888877655 343333333333
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC--------------------------
Q 047221 240 ISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTE-------------------------- 293 (509)
Q Consensus 240 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------------------------- 293 (509)
.....++.++|...++++.+.. +.+...+..+..++...|..+.|...++...
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 4445566888888888777654 2344445556666666666665554444221
Q ss_pred --------------------------CCH-HHH----HHHHHHHHhcCCccHHHHHHHHHHHcCCC-CChHHHHHHHHHH
Q 047221 294 --------------------------RKV-SYY----NILIKEMCRRCDFKGPRDLLVEMRQVGCE-PITLTYNYVLGVL 341 (509)
Q Consensus 294 --------------------------~~~-~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~ 341 (509)
|+. ..+ ...+..+...|++++|+..|+++.+.+-. |+. .-..+..+|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 110 001 11123445668888888888888876522 322 122246678
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-----------CCCC---HHHH
Q 047221 342 CKNGQDADACELLEEMLGRNCHP---DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG-----------LQPR---LATH 404 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----------~~p~---~~~~ 404 (509)
...|++++|+.+|+++.+..... .......+..++.+.|++++|..+++.+.+.. -.|+ ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 88888888888888877642111 13445566667788888888888888887652 1122 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHh
Q 047221 405 AAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN-VSVYRRVLKHLHT 483 (509)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 483 (509)
..+...+...|+.++|+++++++.... +-+...+..+...+...|++++|++.+++... +.|+ ...+......+..
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHH
Confidence 567777888888888888888887653 33466777888888888888888888888877 3455 4556666667788
Q ss_pred cCCHHHHHHHHHHHHhCCCC
Q 047221 484 SHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 484 ~g~~~~a~~~~~~m~~~~~~ 503 (509)
.|++++|+.+++++.+..+.
T Consensus 440 ~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 440 LQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred hCCHHHHHHHHHHHHHhCCC
Confidence 88899999988888876543
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.64 E-value=6.9e-12 Score=140.57 Aligned_cols=334 Identities=11% Similarity=0.028 Sum_probs=227.0
Q ss_pred CHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHH------------HHHHHhccCCHHHHHHHHHHhhhC
Q 047221 159 SNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSL------------VIDNCGRLDDYETMRQLLNDFNVY 224 (509)
Q Consensus 159 ~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~------------li~~~~~~g~~~~A~~l~~~m~~~ 224 (509)
+...+..+-..+.+.|+ +|++.|+......|+.. ....|.. ....+.+.|++++|+..|+++.+.
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~-~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~ 380 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSS-NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV 380 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc-chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45555666666666665 68888888755556432 1111211 133456777888888888877655
Q ss_pred CCccC-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH----------------------------------
Q 047221 225 QVCLN-EKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGV---------------------------------- 269 (509)
Q Consensus 225 ~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~---------------------------------- 269 (509)
. |+ ...+..+-. .....|+.++|++.|++..+... .+...+
T Consensus 381 ~--P~~~~a~~~Lg~-~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 381 D--NTDSYAVLGLGD-VAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred C--CCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3 33 333333434 44445557888887777776431 122222
Q ss_pred --------HHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHH
Q 047221 270 --------RALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYV 337 (509)
Q Consensus 270 --------~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 337 (509)
..+...+...|++++|.+.|++. +.+...+..+...|.+.|++++|...|++..+.. +.+...+..+
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~ 535 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAY 535 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 22344556778999999998885 4467778888999999999999999999987642 1222222222
Q ss_pred H--------------------------------------------HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047221 338 L--------------------------------------------GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFI 373 (509)
Q Consensus 338 i--------------------------------------------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 373 (509)
. ..+...|+.++|.++++ ..+.+...+..+.
T Consensus 536 al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-----~~p~~~~~~~~La 610 (1157)
T PRK11447 536 GLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-----QQPPSTRIDLTLA 610 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-----hCCCCchHHHHHH
Confidence 2 23344455555555544 1234556677788
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 047221 374 VYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPV 453 (509)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 453 (509)
..+.+.|+.++|+..|++..+.. +.+...+..++..|...|+.++|++.++...+.. ..+..++..+..++...|+++
T Consensus 611 ~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 611 DWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHH
Confidence 89999999999999999999863 4467889999999999999999999999877642 224456677888899999999
Q ss_pred HHHHHHHHHHHCCC--Cc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCC
Q 047221 454 MAKNVLSEMMKNGL--RP---NVSVYRRVLKHLHTSHQEHMAKCLSSRYS-SLSLGSS 505 (509)
Q Consensus 454 ~a~~~~~~m~~~g~--~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~-~~~~~~~ 505 (509)
+|.++++++....- .| +...+..+...+...|++++|++.+++.. ..|+.|.
T Consensus 689 eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 689 AAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 99999999987532 22 23456667788899999999999998875 4456544
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.64 E-value=1.1e-11 Score=133.03 Aligned_cols=339 Identities=11% Similarity=0.005 Sum_probs=243.3
Q ss_pred CCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHH
Q 047221 156 VSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAF 233 (509)
Q Consensus 156 ~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 233 (509)
-+.++..+.-.+......|+ +|++++.......| .+...+..+...+.+.|++++|.++|++..+. .|+....
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~---~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a 85 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQ---LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDY 85 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 35566666777777766665 78888888844344 34446999999999999999999999998765 3543333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhc
Q 047221 234 GFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRR 309 (509)
Q Consensus 234 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~ 309 (509)
...+..+....++.++|...++...+.. +.+.. +..+..++...|+.++|...++++ +.+...+..+...+...
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3344435556777999999999998763 44555 889999999999999999999986 44566666677777666
Q ss_pred CCccHHHHHHH----------------------------------------------HHHHc-CCCCChH-HH----HHH
Q 047221 310 CDFKGPRDLLV----------------------------------------------EMRQV-GCEPITL-TY----NYV 337 (509)
Q Consensus 310 g~~~~A~~~~~----------------------------------------------~m~~~-g~~p~~~-t~----~~l 337 (509)
+..++|++.++ .+.+. .-.|+.. .+ ...
T Consensus 164 ~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 164 RLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred CChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 66665554444 33322 1122221 11 111
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHH
Q 047221 338 LGVLCKNGQDADACELLEEMLGRNCH-PDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP---RLATHAAFIKGYFI 413 (509)
Q Consensus 338 i~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~ 413 (509)
+.++...|++++|...|+.+.+.+.. |+. .-..+..+|...|++++|+..|+++.+..-.. .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 33456779999999999999887532 332 22224678999999999999999987653111 13456667778899
Q ss_pred cCCHHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 047221 414 FYRYEDAYKYVVLSADKYK-----------SSS---NMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLK 479 (509)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 479 (509)
.|++++|.++++.+.+... .|+ ...+..+...+...|+.++|+++++++... .+-+...+..+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~ 401 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYAS 401 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 9999999999998886531 233 234566778888999999999999999875 3445677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 480 HLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 480 ~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
.+...|+.++|++.+++..+..+.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd 425 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPR 425 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Confidence 999999999999999998887643
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.62 E-value=6.3e-13 Score=128.35 Aligned_cols=310 Identities=15% Similarity=0.061 Sum_probs=235.4
Q ss_pred hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccC-HHHHHHHHHHHHhccCCHHHHHHHH
Q 047221 176 SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLN-EKAFGFLPVLISSKALTKKGIWRVV 254 (509)
Q Consensus 176 ~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~ 254 (509)
+|..-|......+|.+. .+|+.|-..+-..|+.-.|++-|++.... .|+ ...|-.+-. .+...+.+++|+..+
T Consensus 202 ea~~cYlkAi~~qp~fA---iawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGn-V~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 202 EAKACYLKAIETQPCFA---IAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGN-VYKEARIFDRAVSCY 275 (966)
T ss_pred hhHHHHHHHHhhCCcee---eeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHH-HHHHHhcchHHHHHH
Confidence 44444444444455432 46777777788888888888888887544 343 234444444 455566689999888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC
Q 047221 255 EVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERK-VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI 330 (509)
Q Consensus 255 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 330 (509)
.+..... +-...++..|...|...|.+|.|...+++. .|+ ..+||.|..++-..|++.+|.+.|.+..... .--
T Consensus 276 ~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~h 353 (966)
T KOG4626|consen 276 LRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNH 353 (966)
T ss_pred HHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Ccc
Confidence 8776543 334677889999999999999999999985 444 7899999999999999999999999988763 334
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 047221 331 TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD-AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR-LATHAAFI 408 (509)
Q Consensus 331 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li 408 (509)
....+.|...|...|.+++|.++|....+- .|. ...++.|...|-+.|++++|...+++..+ ++|+ ...|+.+-
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 678899999999999999999999988774 454 45789999999999999999999999885 4676 46899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHH---hc
Q 047221 409 KGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVS-VYRRVLKHLH---TS 484 (509)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~---~~ 484 (509)
..|-..|++..|.+.+.+....+.. -....+.|...|-..|+..+|+.-|+...+ ++||.. .|..++.++- .-
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcc
Confidence 9999999999999999887765321 234688899999999999999999999887 677754 4555555443 33
Q ss_pred CCHHHH-HHHHHHHHhC
Q 047221 485 HQEHMA-KCLSSRYSSL 500 (509)
Q Consensus 485 g~~~~a-~~~~~~m~~~ 500 (509)
.++++- .++++-.++.
T Consensus 507 ~D~d~~~~kl~sivrdq 523 (966)
T KOG4626|consen 507 TDYDKRMKKLVSIVRDQ 523 (966)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 334433 3444444433
No 22
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=9.7e-12 Score=115.34 Aligned_cols=338 Identities=11% Similarity=0.060 Sum_probs=248.9
Q ss_pred CCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHH
Q 047221 156 VSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAF 233 (509)
Q Consensus 156 ~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 233 (509)
.+-++.++..+|.++++-.. .|.++++.....+.. .+..+||.+|.+-.-.. ..++..+|....++||..||
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k--v~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK--VYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe--eeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhH
Confidence 56678899999999998764 799999988322222 34559999988754332 37899999999999999999
Q ss_pred HHHHHHHHhccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHc-------------CCC
Q 047221 234 GFLPVLISSKALTKKG----IWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEM-AKYVIKKT-------------ERK 295 (509)
Q Consensus 234 ~~ll~~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m-------------~~~ 295 (509)
|+++. |..+.|.++. |.+++.+|++.|+.|...+|.-+|..+++.++... |..+...+ +.|
T Consensus 277 NalL~-c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d 355 (625)
T KOG4422|consen 277 NALLS-CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD 355 (625)
T ss_pred HHHHH-HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence 99999 7777776664 56788999999999999999999999999887644 44444432 245
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHcC----CCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047221 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVG----CEPI---TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAIT 368 (509)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 368 (509)
...|...|+.|.+..+.+-|.++-.-+.... +.|+ ..-|..+..+.|+....+.-...|+.|+-.-.-|+..+
T Consensus 356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~ 435 (625)
T KOG4422|consen 356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT 435 (625)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence 6778888888889999888888776555321 3333 33466788888999999999999999998888889999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---------CHHH-----HHHHH-------HHH
Q 047221 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY---------RYED-----AYKYV-------VLS 427 (509)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~-----A~~~~-------~~m 427 (509)
...++.+..-.|+++-.-+++..++..|..-+...---++..+++.. ++.. |..++ .+|
T Consensus 436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~ 515 (625)
T KOG4422|consen 436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ 515 (625)
T ss_pred HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999988875554444433444444332 1111 11122 233
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC----CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 428 ADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGL----RPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 428 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
.+. .-.....+.+.-.+.+.|+.++|.+++....+.+- .|......-++++-...+....|..+++-|...+.
T Consensus 516 r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 516 RAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred Hhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 333 33455678888888999999999999999966542 23333344666677788889999999998876554
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.57 E-value=1.8e-11 Score=121.11 Aligned_cols=291 Identities=11% Similarity=0.012 Sum_probs=220.5
Q ss_pred HHHHHHHHHhc--cCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHH
Q 047221 197 ICSLVIDNCGR--LDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVS--GVRAL 272 (509)
Q Consensus 197 ~~~~li~~~~~--~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~l 272 (509)
.+..+..+... .|+++.|++.+....+.. +....+..+........|+.+.+...+.++.+.. |+.. ..-..
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~ 159 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHH
Confidence 34444444332 599999998888765442 2233333333334467777999999999998743 4443 22244
Q ss_pred HHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCCh-------HHHHHHHHHH
Q 047221 273 IEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPIT-------LTYNYVLGVL 341 (509)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~ 341 (509)
...+...|+++.|...++++ +.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999886 567888999999999999999999999999988754322 2344445544
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047221 342 CKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 421 (509)
....+.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. .+|... .++.+....++.+++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHH
Confidence 5556667777777776543 3457888889999999999999999999998875 445422 2344444569999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 422 KYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
+..+...+.. +-|...+..+...|.+.|++++|.+.|+...+ ..|+..+|..+...+.+.|+.++|.+++++-..
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999887663 34556678899999999999999999999997 579999999999999999999999999987654
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=8.6e-11 Score=124.19 Aligned_cols=360 Identities=11% Similarity=-0.004 Sum_probs=215.4
Q ss_pred HhHHHHHHHHhcCCch-HHHHHHh-CCCCCCH-HHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHH--HH
Q 047221 131 KQVSEIIELLRSGDSE-TESKLLS-MSVSLSN-ASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLV--ID 203 (509)
Q Consensus 131 ~~~~~~~~~~~~~~~~-~~~~l~~-~~~~~~~-~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~l--i~ 203 (509)
..+...+..++.+... ....+.+ ....|+. .....++..+...|+ +|+..++... .|+.. . .+..+ ..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~-~--~~~llalA~ 110 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNI-S--SRGLASAAR 110 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCC-C--HHHHHHHHH
Confidence 3455555556655432 2222222 2344443 123366666666664 7888888874 34222 1 33444 55
Q ss_pred HHhccCCHHHHHHHHHHhhhCCCccC-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047221 204 NCGRLDDYETMRQLLNDFNVYQVCLN-EKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLY 282 (509)
Q Consensus 204 ~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (509)
.+...|++++|+++|+++.+.. |+ ...+..+.. .....++.++|++.++.+... .|+...+-.++..+...++.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~-~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIM-TQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHH-HHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 7888899999999999987664 33 344444434 444556688999988888765 34455555555555556666
Q ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHH--------------------------------------
Q 047221 283 EMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLV-------------------------------------- 320 (509)
Q Consensus 283 ~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~-------------------------------------- 320 (509)
.+|.+.++++ +.+...+..++.+..+.|-...|.++..
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6688888886 3345555555555555554444443332
Q ss_pred ----------HHHH-cCCCCCh-H----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 047221 321 ----------EMRQ-VGCEPIT-L----TYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDV 384 (509)
Q Consensus 321 ----------~m~~-~g~~p~~-~----t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 384 (509)
.+.. .+-.|.. . ..--.+-++...|++.++.+.|+.|...|.+.-..+-.++.++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 1111 0111211 1 1112334556677777888888888777765555567777788888888888
Q ss_pred HHHHHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----------CCCH---HHHHHHHHH
Q 047221 385 AFNFFNQMVKRG-----LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYK-----------SSSN---MLYSLLASL 445 (509)
Q Consensus 385 a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~~---~~~~~li~~ 445 (509)
|+.+++++.... ..++......|.-+|...+++++|..+++.+.+.-. .||. ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 888888775542 123344456777777778888888888877776211 1111 233445666
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 446 HDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
+...|+..+|++.++++... -+-|......+.+.+...|...+|++.++......
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~ 480 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLA 480 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Confidence 67777788888888777653 23366666677777777777777777776655443
No 25
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=4.4e-11 Score=119.06 Aligned_cols=296 Identities=8% Similarity=-0.030 Sum_probs=212.9
Q ss_pred HHHHHHHHHh--ccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047221 197 ICSLVIDNCG--RLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIE 274 (509)
Q Consensus 197 ~~~~li~~~~--~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 274 (509)
.+..+..+.. ..|+++.|.+.+.+..+. .|+...+-.+..-.....|+.+.+...+....+....+.....-....
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~ 161 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTR 161 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHH
Confidence 4555555543 579999999999887554 455555544544455666779999999999876543333334445688
Q ss_pred HHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHH-HHHHHH---HhcCC
Q 047221 275 MFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYN-YVLGVL---CKNGQ 346 (509)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~li~~~---~~~g~ 346 (509)
.+...|+++.|...++.+ +.+...+..+...|.+.|++++|.+++..+.+.++. +...+. .-..++ ...+.
T Consensus 162 l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 162 ILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999887 567888999999999999999999999999998754 333332 111222 22233
Q ss_pred hHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHH--HHHcCCHHHH
Q 047221 347 DADACELLEEMLGRN---CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATH-AAFIKG--YFIFYRYEDA 420 (509)
Q Consensus 347 ~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~--~~~~g~~~~A 420 (509)
.+++.+.+..+.+.. .+.+...+..+...+...|+.++|.+++++..+.. ||.... ..++.. ....++.+.+
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~ 318 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKL 318 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHH
Confidence 333333444444431 12378889999999999999999999999998863 333210 012332 2345788889
Q ss_pred HHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 421 YKYVVLSADKYKSSSN--MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 421 ~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
.+.++...+.. .-|. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus 319 ~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 319 EKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888776552 2233 45668889999999999999999965444467999999999999999999999999998753
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.51 E-value=1.3e-09 Score=117.70 Aligned_cols=316 Identities=12% Similarity=0.032 Sum_probs=209.6
Q ss_pred hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhC--CCccCHHHHHHHHHHHHhccC--------
Q 047221 176 SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVY--QVCLNEKAFGFLPVLISSKAL-------- 245 (509)
Q Consensus 176 ~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--~~~p~~~~~~~ll~~~~~~~~-------- 245 (509)
+|.+....|....|. +....-.+--...+.|+.++|.++|+..... +-.++.....-++..+.....
T Consensus 360 ~~~~~~~~~y~~~~~---~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 436 (987)
T PRK09782 360 EALRLARLLYQQEPA---NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVA 436 (987)
T ss_pred HHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHH
Confidence 566666666444443 2224444444456778888888888877552 122233333344443333211
Q ss_pred ----------------CHHHHHHHHHHHHH-cCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCHHHHHHH
Q 047221 246 ----------------TKKGIWRVVEVLNQ-VGG-SC--LVSGVRALIEMFSVLGLYEMAKYVIKKT---ERKVSYYNIL 302 (509)
Q Consensus 246 ----------------~~~~a~~~~~~m~~-~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~l 302 (509)
+..++....+.... .+. ++ +...|..+..++.. |+.++|...+.+. .|+......+
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~l 515 (987)
T PRK09782 437 ILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAV 515 (987)
T ss_pred HhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHH
Confidence 11111111222211 112 33 56777888888877 7888888866663 4554333333
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKF 382 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 382 (509)
...+.+.|++++|...|+++... .|+...+..+..++.+.|+.++|.+.++...+.. +.+...+..+.....+.|++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~ 592 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQP 592 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCH
Confidence 44446889999999999887654 4555566677778888999999999998888763 22333333333444556999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 047221 383 DVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 383 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 462 (509)
++|...+++..+. .|+...|..+..++.+.|+.++|...+++..+.. ..+...++.+...+...|+.++|++.+++.
T Consensus 593 ~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 593 ELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999888865 4677788888888999999999999998887764 234567777888888899999999999988
Q ss_pred HHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 463 MKNGLRP-NVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 463 ~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
.+. .| +...+..+..++...|++++|+..+++..+..+.
T Consensus 670 L~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 670 HKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 874 34 4567788888888999999999999888876654
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=1.9e-13 Score=129.10 Aligned_cols=259 Identities=14% Similarity=0.020 Sum_probs=67.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 047221 201 VIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLG 280 (509)
Q Consensus 201 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (509)
+...+.+.|++++|++++++.....-+|+...|-.++...+...++.+.|...++.+...+.. +...+..++..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l----- 87 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL----- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-----
Confidence 355555666666666666443322212333333333332333444455555555555543322 23333333333
Q ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047221 281 LYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR 360 (509)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 360 (509)
...+++++|.+++.+..+. .++...+..++..+.+.|+++++.++++.+.+.
T Consensus 88 --------------------------~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~ 139 (280)
T PF13429_consen 88 --------------------------LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL 139 (280)
T ss_dssp ----------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-
T ss_pred --------------------------ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3444555555554443332 233344445555555555555555555554432
Q ss_pred C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047221 361 N-CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP-RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNML 438 (509)
Q Consensus 361 g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 438 (509)
. .+.+...|..+...+.+.|+.++|++.+++..+. .| |....+.++..+...|+.+++.++++...+.. ..+...
T Consensus 140 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~ 216 (280)
T PF13429_consen 140 PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDL 216 (280)
T ss_dssp T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCH
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHH
Confidence 1 2334445555555555555555555555555544 22 34445555555555555555555555444332 222334
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047221 439 YSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRY 497 (509)
Q Consensus 439 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 497 (509)
|..+..+|...|+.++|+.+|++.... .+.|..+...+..++...|+.++|.++..+.
T Consensus 217 ~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHhccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 455555555555555555555555542 1224445555555555556666555555443
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.47 E-value=1.9e-09 Score=116.40 Aligned_cols=320 Identities=10% Similarity=-0.072 Sum_probs=231.7
Q ss_pred CCchHHHHHHHhhccCCCCccChhHHHHHHHHHhccCC---HHHHHHH------------HHHhhh-----------CCC
Q 047221 173 EKVSALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDD---YETMRQL------------LNDFNV-----------YQV 226 (509)
Q Consensus 173 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~---~~~A~~l------------~~~m~~-----------~~~ 226 (509)
.+++|.++|+......++...+....+-++..|.+.+. ..++..+ ..+... .+.
T Consensus 391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~ 470 (987)
T PRK09782 391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD 470 (987)
T ss_pred cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence 33589999998833344433344456678888888776 3344333 111100 122
Q ss_pred cc---CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCHHHHH
Q 047221 227 CL---NEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERKVSYYN 300 (509)
Q Consensus 227 ~p---~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~ 300 (509)
.| +...|..+-. ++.. ++.++|...+....... |+......+...+...|++++|...|+++ +++...+.
T Consensus 471 ~p~~~~~~a~~~LG~-~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~ 546 (987)
T PRK09782 471 MSPSYDAAAWNRLAK-CYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLL 546 (987)
T ss_pred CCCCCCHHHHHHHHH-HHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHH
Confidence 23 3445555555 4444 45888999777776544 55544444555567899999999999986 35556677
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047221 301 ILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG 380 (509)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 380 (509)
.+...+.+.|+.++|...+++..+.+ +.+...+..+.......|++++|...+++..+. .|+...|..+...+.+.|
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCC
Confidence 77888999999999999999998764 233333334444555679999999999999876 567888999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 047221 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLS 460 (509)
Q Consensus 381 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 460 (509)
+.++|+..+++..+.. +-+...++.+..++...|+.++|...+++..+... -+...+..+..++...|++++|+..++
T Consensus 624 ~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 624 NVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999998873 33567888888899999999999999999887642 356678889999999999999999999
Q ss_pred HHHHCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 461 EMMKNGLRPNV-SVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 461 ~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
+..+ +.|+. .+....-....+..+++.|.+-+++--..++.
T Consensus 702 ~Al~--l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 702 LVID--DIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHh--cCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9987 44554 44445555666677788888877776655544
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.46 E-value=3.3e-09 Score=112.38 Aligned_cols=326 Identities=13% Similarity=0.061 Sum_probs=247.7
Q ss_pred HHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccC
Q 047221 168 RVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKAL 245 (509)
Q Consensus 168 ~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 245 (509)
..+...|+ .|+++|+.+....|+ +...+..++..+.+.++.++|++.++++... .|+...+..++.... ..+
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~---n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~-~~~ 183 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPT---NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNR-ATD 183 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHH-hcc
Confidence 34555564 899999999777785 3457778889999999999999999998655 466666644433222 234
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC--------------------------------
Q 047221 246 TKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTE-------------------------------- 293 (509)
Q Consensus 246 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------------------------------- 293 (509)
...+|...++++.+.. +.+...+..++.++.+.|-...|.++.++-+
T Consensus 184 ~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~ 262 (822)
T PRK14574 184 RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE 262 (822)
T ss_pred hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchh
Confidence 4656999999999865 4456667777777777776666665554321
Q ss_pred ----------------------CC-----HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 047221 294 ----------------------RK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ 346 (509)
Q Consensus 294 ----------------------~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 346 (509)
|. ..+.--.+-++.+.|++.+|++.|+.|...|.+....+-..+.++|...++
T Consensus 263 r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~ 342 (822)
T PRK14574 263 RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRL 342 (822)
T ss_pred hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCC
Confidence 10 011123455677889999999999999999877666788899999999999
Q ss_pred hHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-----------CCC---HHHHHHH
Q 047221 347 DADACELLEEMLGRN-----CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL-----------QPR---LATHAAF 407 (509)
Q Consensus 347 ~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----------~p~---~~~~~~l 407 (509)
+++|..+++.+.... ..++......|.-+|...+++++|..+++++.+..- .|| ...+..+
T Consensus 343 P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~ 422 (822)
T PRK14574 343 PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLL 422 (822)
T ss_pred cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHH
Confidence 999999999987652 233455567889999999999999999999987311 122 1234556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcCC
Q 047221 408 IKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP-NVSVYRRVLKHLHTSHQ 486 (509)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~ 486 (509)
+..+...|++.+|++.++++.... +-|......+...+...|.+.+|++.++..... .| +..+......++...|+
T Consensus 423 a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 423 VQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhh
Confidence 778889999999999999997653 447778889999999999999999999776653 45 45677788888899999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 047221 487 EHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 487 ~~~a~~~~~~m~~~~~~ 503 (509)
+++|..+.+.+.+..+.
T Consensus 500 ~~~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 500 WHQMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 99999999888766554
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.46 E-value=3.5e-11 Score=118.01 Aligned_cols=284 Identities=12% Similarity=0.006 Sum_probs=179.6
Q ss_pred HHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 047221 211 YETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVG--GSCLVSGVRALIEMFSVLGLY-EMAKY 287 (509)
Q Consensus 211 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~-~~A~~ 287 (509)
..+|..+|+..... +.-+......+-.+|+.... +++|+++|+.+.+.. ..-+...|.+.+.-+-+.-.+ -.|..
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~-Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIE-YDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 44555555553222 22222333444444554444 666666666655432 122344455544433322111 12333
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047221 288 VIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAI 367 (509)
Q Consensus 288 ~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 367 (509)
+.+..+....+|.++.++|.-+++.+.|++.|++..+.. +-...+|+.+..-+.....+|.|...|+..+.. |..
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~r 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPR 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----Cch
Confidence 444445567788888888888888888888888777653 226777777777777778888888888776543 666
Q ss_pred HHHHH---HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047221 368 TYEIF---IVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLAS 444 (509)
Q Consensus 368 ~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 444 (509)
.||+. ...|.|.++++.|+-.|+...+-+ +-+.+....+...+-+.|+.|+|++++++....+.+-...-|. .+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~-~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH-RAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH-HHH
Confidence 66653 456778888888888888777653 2355666667777778888888888888877665443333343 555
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047221 445 LHDKNNNPVMAKNVLSEMMKNGLRPN-VSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSS 505 (509)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 505 (509)
.+...+++++|+..++++++ +.|+ ..+|..+.+.|.+.|+.+.|+.-|.-+.+.++++.
T Consensus 566 il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 66677888888888888877 4444 44566777788888888888888887777776654
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.46 E-value=4.3e-13 Score=126.69 Aligned_cols=225 Identities=15% Similarity=0.119 Sum_probs=102.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-c-----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 047221 271 ALIEMFSVLGLYEMAKYVIKK-T-----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~-m-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 344 (509)
.+..++.+.|++++|.+++++ + +.|...|..+.......+++++|.+.++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 567888899999999999954 2 2345666667777788999999999999999776 3356677777776 799
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047221 345 GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG-LQPRLATHAAFIKGYFIFYRYEDAYKY 423 (509)
Q Consensus 345 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~ 423 (509)
+++++|.+++....+. .++...+..++..+.+.++++++.++++++.... .+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887665 3566778888899999999999999999987542 456788899999999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 424 VVLSADKYKSS-SNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 424 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
+++..+.. | |....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|...+++..+..+
T Consensus 169 ~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99998864 4 46678889999999999999999998887753 55666788999999999999999999999887554
No 32
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.40 E-value=1.1e-08 Score=94.91 Aligned_cols=298 Identities=15% Similarity=0.109 Sum_probs=231.5
Q ss_pred HHHHHHHHHhc--cCCHHHHHHHHHHhhhCCCccCHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047221 197 ICSLVIDNCGR--LDDYETMRQLLNDFNVYQVCLNEKAFGFLPVL-ISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALI 273 (509)
Q Consensus 197 ~~~~li~~~~~--~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 273 (509)
.-..+..+..+ .|+|..|+++..+-.+.+-.| +.+.++.+ .+...|+.+.+.+++.+..+....++..++-+..
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p---~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltra 160 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP---VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRA 160 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch---HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHH
Confidence 44455555544 599999999999977666333 44444443 3456677999999999999876677788888899
Q ss_pred HHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC-------hHHHHHHHHHHH
Q 047221 274 EMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI-------TLTYNYVLGVLC 342 (509)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~t~~~li~~~~ 342 (509)
......|+++.|..-.+++ +.+...-.....+|.+.|++.++..++..|.+.|+--| ..+|..++.-..
T Consensus 161 rlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 161 RLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998877764 67889999999999999999999999999999987655 357788888777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047221 343 KNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYK 422 (509)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 422 (509)
..+..+.-...+++.... .+-+...-.+++.-+.++|+.++|.++..+..+++..|+. ..++ .+.+-++.+.-.+
T Consensus 241 ~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~~~-~~l~~~d~~~l~k 315 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CRLI-PRLRPGDPEPLIK 315 (400)
T ss_pred ccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HHHH-hhcCCCCchHHHH
Confidence 777777766677766544 3445666677888899999999999999999998877662 2222 3345566666665
Q ss_pred HHHHHHh-CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 423 YVVLSAD-KYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 423 ~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
..+.-.. .+..| -.+.+|...|.+.+.|.+|.+.|+...+ ..|+..+|.-+..++.+.|+.++|.++.++-...-
T Consensus 316 ~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 316 AAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 5554333 34444 5678899999999999999999997776 67999999999999999999999999999887665
Q ss_pred CCCCc
Q 047221 502 LGSSV 506 (509)
Q Consensus 502 ~~~~~ 506 (509)
.+|+.
T Consensus 392 ~~~~~ 396 (400)
T COG3071 392 RQPNL 396 (400)
T ss_pred cCCCC
Confidence 55554
No 33
>PF13041 PPR_2: PPR repeat family
Probab=99.38 E-value=1.2e-12 Score=87.60 Aligned_cols=45 Identities=38% Similarity=0.613 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047221 331 TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVY 375 (509)
Q Consensus 331 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 375 (509)
.++||++|.+|++.|++++|.++|++|.+.|+.||..||++||++
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333
No 34
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=2.6e-10 Score=111.93 Aligned_cols=299 Identities=13% Similarity=0.041 Sum_probs=223.1
Q ss_pred CCCCCHHHHHHHHHHHhcCC--------chHHHHHHHhhccCCCCccCh-hHHHHHHHHHhccCCHHHHHHHHHHhhhCC
Q 047221 155 SVSLSNASVIEILRVLNSEK--------VSALCFLKYMREIMPEFYKNS-DICSLVIDNCGRLDDYETMRQLLNDFNVYQ 225 (509)
Q Consensus 155 ~~~~~~~~~~~ll~~~~~~~--------~~A~~~~~~~~~~~p~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 225 (509)
+..-+....-.+++.++..- ++|+..|... |....|. .+...+-.+|...+++++|+++|+.+.+..
T Consensus 308 ~l~~~~~~l~~llr~~~~~~~~~s~y~~~~A~~~~~kl----p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~ 383 (638)
T KOG1126|consen 308 GLKDDASELMELLRGLGEGYRSLSQYNCREALNLFEKL----PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE 383 (638)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44444555666666655332 2688888887 3333222 355778889999999999999999996653
Q ss_pred C--ccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHH
Q 047221 226 V--CLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYY 299 (509)
Q Consensus 226 ~--~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~ 299 (509)
- .-+..+|.+.+- ++. -+-++..+.+-.-.--+-...+|.++.++|.-.++.+.|++.|++. +....+|
T Consensus 384 p~rv~~meiyST~LW-HLq----~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYay 458 (638)
T KOG1126|consen 384 PYRVKGMEIYSTTLW-HLQ----DEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAY 458 (638)
T ss_pred cccccchhHHHHHHH-HHH----hhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhh
Confidence 1 226778888887 332 2223333333222223556789999999999999999999999985 3478999
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047221 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY---NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS 376 (509)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 376 (509)
+.+..-+.....+|.|...|+... ..|...| -.+...|.+.++++.|+-.|+...+-. +-+.+....+...+
T Consensus 459 TLlGhE~~~~ee~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 459 TLLGHESIATEEFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQ 533 (638)
T ss_pred hhcCChhhhhHHHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHH
Confidence 999999999999999999999887 4444444 557778999999999999999888753 23566677777888
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHH
Q 047221 377 CRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSS-SNMLYSLLASLHDKNNNPVMA 455 (509)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a 455 (509)
-+.|+.++|++++++......+ |...--..+..+...++.++|+..++++++. .| +...|..+...|-+.|+.+.|
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHH
Confidence 9999999999999999877533 4444444666777889999999999999875 44 445677888899999999999
Q ss_pred HHHHHHHHHCCCCcC
Q 047221 456 KNVLSEMMKNGLRPN 470 (509)
Q Consensus 456 ~~~~~~m~~~g~~p~ 470 (509)
+.-|--|.+..-++.
T Consensus 611 l~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 611 LLHFSWALDLDPKGA 625 (638)
T ss_pred HHhhHHHhcCCCccc
Confidence 999999887544443
No 35
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=2e-12 Score=86.58 Aligned_cols=49 Identities=39% Similarity=0.748 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047221 364 PDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412 (509)
Q Consensus 364 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (509)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.||++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
No 36
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=1.6e-09 Score=99.00 Aligned_cols=200 Identities=13% Similarity=0.055 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047221 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS 376 (509)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 376 (509)
..+..+...|...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 444555555666666666666666555432 2334555566666666666666666666665542 22344555566666
Q ss_pred HHcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 047221 377 CRVGKFDVAFNFFNQMVKRGL-QPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMA 455 (509)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 455 (509)
...|++++|...+++..+... ......+..+..+|...|++++|...+++..+... .+...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHH
Confidence 666777777777766665321 11234555566667777777777777776665432 2344566677777777777777
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047221 456 KNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 456 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 500 (509)
.+.+++..+. ...+...+..+...+...|+.++|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 7777777664 2334555556666667777777777777766543
No 37
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=7.9e-09 Score=93.15 Aligned_cols=286 Identities=10% Similarity=0.081 Sum_probs=187.9
Q ss_pred CCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHH
Q 047221 209 DDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCL---VSGVRALIEMFSVLGLYEMA 285 (509)
Q Consensus 209 g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A 285 (509)
.+.++|.++|-+|.+. .|...-.+.-+.-.+.+.|..+.|+++++.+.+..-.+. ..+.-.|..=|...|-+|.|
T Consensus 49 ~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 49 NQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4566666666666542 122222222222244555556777777666665321111 12234566678888889999
Q ss_pred HHHHHHcC--C--CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCChHHHHHHHHHH
Q 047221 286 KYVIKKTE--R--KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPIT----LTYNYVLGVLCKNGQDADACELLEEM 357 (509)
Q Consensus 286 ~~~~~~m~--~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m 357 (509)
+.+|..+- + -..+...|+..|-+..+|++|+++-+++.+.|-.+.. .-|.-+...+....+++.|..++.+.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99988862 2 2456677888899999999999999888876644432 23455555566678888888888888
Q ss_pred HhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 047221 358 LGRNCHPDAI-TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN 436 (509)
Q Consensus 358 ~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 436 (509)
.+.. |+.+ .--.+-+.+...|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+.++.+....++.
T Consensus 207 lqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 207 LQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA 284 (389)
T ss_pred HhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH
Confidence 7762 3322 233344677788999999999999888865555677888999999999999999999888776444443
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhCCC
Q 047221 437 MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLH---TSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 437 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~g~~~~a~~~~~~m~~~~~ 502 (509)
. ..+...-....-.+.|..++.+-.. -+|+...+..+++.-. ..|...+-..++++|...-+
T Consensus 285 ~--l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 285 E--LMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred H--HHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 2 3333333344445666666665554 4688888888888653 45567777778888774433
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.34 E-value=1.1e-08 Score=101.78 Aligned_cols=292 Identities=9% Similarity=-0.048 Sum_probs=203.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHH--HHHHHHHHH
Q 047221 163 VIEILRVLNSEKVSALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEK--AFGFLPVLI 240 (509)
Q Consensus 163 ~~~ll~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~--~~~~ll~~~ 240 (509)
...++.........|.+.+.......|+.. ..|-....+..+.|+++.|.+.+.+..+.. |+.. .--.... .
T Consensus 89 ~~glla~~~g~~~~A~~~l~~~~~~~~~~~---~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~-l 162 (409)
T TIGR00540 89 EEALLKLAEGDYAKAEKLIAKNADHAAEPV---LNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTR-I 162 (409)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhcCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHH-H
Confidence 333443333344578888888744455422 233444667888899999999999986543 4443 2222233 3
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC----CCHHHHH----HHHHHHHhcCCc
Q 047221 241 SSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTE----RKVSYYN----ILIKEMCRRCDF 312 (509)
Q Consensus 241 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~----~li~~~~~~g~~ 312 (509)
....++.+.|...++.+.+.. +-+..+...+..+|...|++++|.+.++.+. .+...+. ....+....+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 334566999999999999876 5566788999999999999999999998873 2333332 111222333344
Q ss_pred cHHHHHHHHHHHcCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHH--HHHHcCChHHHH
Q 047221 313 KGPRDLLVEMRQVGC---EPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITY-EIFIV--YSCRVGKFDVAF 386 (509)
Q Consensus 313 ~~A~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~li~--~~~~~g~~~~a~ 386 (509)
+++.+.+..+.+..- +.+...+..+...+...|+.++|.+++++..+. .||.... ..++. .....++.+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHH
Confidence 444556666655421 137788889999999999999999999999986 3443311 01223 233457888899
Q ss_pred HHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 387 NFFNQMVKRGLQPRL--ATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 387 ~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+.++...+.. +-|. ....++-..|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 320 ~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 320 KLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9998877652 2234 566788999999999999999999655555578988899999999999999999999998644
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.33 E-value=1e-08 Score=101.61 Aligned_cols=275 Identities=10% Similarity=0.033 Sum_probs=204.8
Q ss_pred chHHHHHHHhhccCCCCccChhHHHHH-HHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHH-HHHHhccCCHHHHHH
Q 047221 175 VSALCFLKYMREIMPEFYKNSDICSLV-IDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLP-VLISSKALTKKGIWR 252 (509)
Q Consensus 175 ~~A~~~~~~~~~~~p~~~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~~a~~ 252 (509)
+.|.+......+..+ ++..+-.+ .....+.|+++.|.+.+.++.+. .|+......+. .......|+.+.|..
T Consensus 101 ~~A~k~l~~~~~~~~----~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 101 QQVEKLMTRNADHAE----QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred HHHHHHHHHHHhccc----chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 477777776522111 12233333 44458999999999999999654 46654433222 224445666999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC----CH--------HHHHHHHHHHHhcCCccHHHHHHH
Q 047221 253 VVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTER----KV--------SYYNILIKEMCRRCDFKGPRDLLV 320 (509)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~--------~~~~~li~~~~~~g~~~~A~~~~~ 320 (509)
.++.+.+.. +-+..+...+...|.+.|++++|..++..+.. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998866 55678889999999999999999999988731 11 234444544445555566666666
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047221 321 EMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR 400 (509)
Q Consensus 321 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 400 (509)
.+.+. .+.+......+..++...|+.++|.+++++..+. .+|... .++.+....++.+++.+..+...+.. +-|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 66443 2457778889999999999999999999999885 455522 23444556699999999999988763 446
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 401 LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
.....++...+.+.|++++|.+.|+...+. .|+..+|..+...+.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 677889999999999999999999998875 68999999999999999999999999998754
No 40
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=7e-09 Score=93.49 Aligned_cols=248 Identities=10% Similarity=0.038 Sum_probs=189.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--CCC------HHHHHHHHHHHHhcCCccHHH
Q 047221 245 LTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT--ERK------VSYYNILIKEMCRRCDFKGPR 316 (509)
Q Consensus 245 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~------~~~~~~li~~~~~~g~~~~A~ 316 (509)
++.++|.+.|-+|.+.. +.+..+.-+|.+.|.+.|.+|.|+++.+.+ .|| ..+...|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45899999999999733 344556679999999999999999999987 344 345567888899999999999
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHH
Q 047221 317 DLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAI----TYEIFIVYSCRVGKFDVAFNFFNQM 392 (509)
Q Consensus 317 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m 392 (509)
++|..+.+.| ..-....--|+..|-...+|++|.++-.++.+.|-.+..+ .|.-+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999999876 4456677889999999999999999999998876554422 3444555556678899999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHH
Q 047221 393 VKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVS 472 (509)
Q Consensus 393 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 472 (509)
.+.+ +-.+..--.+-+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++.+..+.++.+..-.++.
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~- 284 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA- 284 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH-
Confidence 8763 22334444566778899999999999999999876666678889999999999999999999999885443433
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 047221 473 VYRRVLKHLHTSHQEHMAKCLSSRY 497 (509)
Q Consensus 473 t~~~ll~~~~~~g~~~~a~~~~~~m 497 (509)
-..+.+.-....-.+.|..++.+-
T Consensus 285 -~l~l~~lie~~~G~~~Aq~~l~~Q 308 (389)
T COG2956 285 -ELMLADLIELQEGIDAAQAYLTRQ 308 (389)
T ss_pred -HHHHHHHHHHhhChHHHHHHHHHH
Confidence 333334333334445555544433
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.1e-08 Score=94.63 Aligned_cols=285 Identities=9% Similarity=-0.054 Sum_probs=188.7
Q ss_pred CCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHH-HH
Q 047221 209 DDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGG--SCLVSGVRALIEMFSVLGLYE-MA 285 (509)
Q Consensus 209 g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~-~A 285 (509)
.+.+++.+=.+.....|+. ...-+-+.+.++.-...+++.|+.+|+++.+... -.|..+|..++-.--.+.++. .|
T Consensus 241 ~q~~e~~~k~e~l~~~gf~-~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFP-NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHhccCC-ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 3444444444444444443 2222233333333344446666666666665421 123445555443332222211 12
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047221 286 KYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD 365 (509)
Q Consensus 286 ~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 365 (509)
..+++--+-.+.|+.++.+-|.-.++.++|...|++..+.+ +-....|+.|..-|....+...|.+-++..++- .+.|
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~D 397 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRD 397 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-Cchh
Confidence 22222212334566677777888888999999999988775 455678888888999999999999999988876 4557
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047221 366 AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASL 445 (509)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 445 (509)
-..|-.|-.+|.-.+...-|+-.|++..+.. +-|...|.+|-++|.+.+++++|.+.|.+....|-. +...+..|...
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakL 475 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKL 475 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHH
Confidence 7888899999999999999999999887652 446889999999999999999999999988876633 55778889999
Q ss_pred HHhCCChHHHHHHHHHHHH----CCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 446 HDKNNNPVMAKNVLSEMMK----NGLRPNV--SVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~----~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
|-+.++..+|...|++-++ .|..-+. ....-|...+.+.+++++|........
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 9999999999888887665 2433332 222224455567777777776554443
No 42
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.31 E-value=2.5e-09 Score=97.68 Aligned_cols=197 Identities=15% Similarity=0.113 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 047221 265 LVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGV 340 (509)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 340 (509)
....+..+...|...|++++|...+++. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456777888888888998888888775 3457778888888888999999999998888764 3455677788888
Q ss_pred HHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047221 341 LCKNGQDADACELLEEMLGRNC-HPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED 419 (509)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 419 (509)
+...|++++|.+.+++..+... ......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 8899999999999998876532 2234566677788888999999999999887763 3346678888888999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 420 AYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 420 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
|...+++..+. ...+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988776 344566677778888888999999988887764
No 43
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.26 E-value=1.6e-09 Score=109.36 Aligned_cols=249 Identities=14% Similarity=0.094 Sum_probs=153.3
Q ss_pred chHHHHHHhCCCCCCHHHHHHHHHHHhcCCc-hHHHHHHHh-hccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhh
Q 047221 145 SETESKLLSMSVSLSNASVIEILRVLNSEKV-SALCFLKYM-REIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFN 222 (509)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~-~A~~~~~~~-~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 222 (509)
.++...+...|+.|+..||.++|..|+..|+ +|.-+|..| .+..| -+...++.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLp---v~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLP---VREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhccccc---ccchhHHHHHhcccccccccCCC-------
Confidence 3466677888999999999999999999997 666688888 22222 12226666666666666655544
Q ss_pred hCCCccCHHHHHHHHHHHHhccCCHHH---HHHHHHHHHH----cC-----------------CCCCHHHHHHHHHHHHh
Q 047221 223 VYQVCLNEKAFGFLPVLISSKALTKKG---IWRVVEVLNQ----VG-----------------GSCLVSGVRALIEMFSV 278 (509)
Q Consensus 223 ~~~~~p~~~~~~~ll~~~~~~~~~~~~---a~~~~~~m~~----~g-----------------~~~~~~~~~~li~~~~~ 278 (509)
.|...||..+..+|...|+ +.. +++.+..... .| .-||. .+++.....
T Consensus 80 ----ep~aDtyt~Ll~ayr~hGD-li~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~ 151 (1088)
T KOG4318|consen 80 ----EPLADTYTNLLKAYRIHGD-LILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVL 151 (1088)
T ss_pred ----CCchhHHHHHHHHHHhccc-hHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHH
Confidence 4566666666664443322 332 2221111111 11 11222 234445555
Q ss_pred cCCHHHHHHHHHHcCCCHH--HHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047221 279 LGLYEMAKYVIKKTERKVS--YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEE 356 (509)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 356 (509)
.|-++.+.+++..++.... ..-.++.-+.. ++.-..++........-.|+..+|..++.+-...|+++.|..++.+
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 6677777777766642210 11111222222 2233344443333221158888888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047221 357 MLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416 (509)
Q Consensus 357 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 416 (509)
|.+.|++.+.+-|-.|+-+ .++...++.+++-|.+.|+.|+..|+..-+..+..+|.
T Consensus 230 mke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888888877777766 67778888888888888888888887776666666444
No 44
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.26 E-value=1.3e-10 Score=116.87 Aligned_cols=236 Identities=14% Similarity=0.082 Sum_probs=126.2
Q ss_pred hccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 047221 185 REIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSC 264 (509)
Q Consensus 185 ~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~ 264 (509)
.|+.|+.. ||..+|.-||..|+.+.|- +|.-|.-+....+...|+.++.... ..++.+.+. .|
T Consensus 19 ~gi~PnRv----tyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~-~And~Enpk-----------ep 81 (1088)
T KOG4318|consen 19 SGILPNRV----TYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK-EANDAENPK-----------EP 81 (1088)
T ss_pred hcCCCchh----hHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc-ccccccCCC-----------CC
Confidence 67888766 8999999999999988888 8888887777778888888887433 333344443 67
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH-cCCCCChHHHHHHHHHHHh
Q 047221 265 LVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQ-VGCEPITLTYNYVLGVLCK 343 (509)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li~~~~~ 343 (509)
...+|.+|..+|...|++.. |+..+.|. -.++..+...|.-.....++..+.- .+.-||..+ .+.....
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~----fe~veqdL---e~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~ 151 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL----FEVVEQDL---ESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVL 151 (1088)
T ss_pred chhHHHHHHHHHHhccchHH----HHHHHHHH---HHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHH
Confidence 78888899999999888766 22221111 1122223333333222222222211 112222221 1111222
Q ss_pred cCChHHHHHHHHHHH-----------------------------hCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 344 NGQDADACELLEEML-----------------------------GRNC-HPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~-----------------------------~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
.|.++.+++++..+. +.+. .|+..+|.+++++-.-+|+++.|..++.+|.
T Consensus 152 eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 333333333332221 1111 2555555555555555555555555555555
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 047221 394 KRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNN 450 (509)
Q Consensus 394 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 450 (509)
+.|++.+..-|-.|+-+ .++...+..++..|.+.|+.|+..|+...+..+..+|
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 55555555444444433 4555555555555555555555555555554444433
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.26 E-value=5.1e-08 Score=99.18 Aligned_cols=320 Identities=9% Similarity=-0.012 Sum_probs=241.6
Q ss_pred HHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhcc
Q 047221 168 RVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCL-NEKAFGFLPVLISSKA 244 (509)
Q Consensus 168 ~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~ll~~~~~~~ 244 (509)
..+++ |+ +|.+++.++.+..| ++...|.+|...|-+.|+.+++...+-.. ..+.| |...|..+-. ...+.
T Consensus 148 ~lfar-g~~eeA~~i~~EvIkqdp---~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~lad-ls~~~ 220 (895)
T KOG2076|consen 148 NLFAR-GDLEEAEEILMEVIKQDP---RNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLAD-LSEQL 220 (895)
T ss_pred HHHHh-CCHHHHHHHHHHHHHhCc---cchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHH-HHHhc
Confidence 33444 54 89999999966667 35569999999999999999998776544 33334 5566666666 66677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCC-H----HHHHHHHHHHHhcCCccHH
Q 047221 245 LTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERK-V----SYYNILIKEMCRRCDFKGP 315 (509)
Q Consensus 245 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~-~----~~~~~li~~~~~~g~~~~A 315 (509)
|.+..|.-.+.+..+.. +++...+---...|-+.|+...|..-|.++ +|. . ..--.++..|...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 77999999999999876 445555567788899999999999888886 322 1 2223456677778888899
Q ss_pred HHHHHHHHH-cCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC---------------------------CCCCCHH
Q 047221 316 RDLLVEMRQ-VGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR---------------------------NCHPDAI 367 (509)
Q Consensus 316 ~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------g~~p~~~ 367 (509)
.+.+..... .+-..+..+++.++..|.+...++.|......+... +..++..
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence 998887765 233566778889999999999999999988888772 2233433
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRGL--QPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASL 445 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 445 (509)
++. ++-++.+....+....+.....+... .-+...|.-+.++|...|++.+|+.+|..+......-+...|--+..+
T Consensus 380 v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c 458 (895)
T KOG2076|consen 380 VIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC 458 (895)
T ss_pred hHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence 422 23344555666666666677777663 335667889999999999999999999999988666678889999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 446 HDKNNNPVMAKNVLSEMMKNGLRPN-VSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
|...|..++|++.|++.+.. .|+ ...-.+|-..+.+.|+.|+|.+.+..|.
T Consensus 459 ~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 459 YMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 99999999999999999873 443 3345566667889999999999999877
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=1e-08 Score=106.11 Aligned_cols=245 Identities=13% Similarity=0.001 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCcc
Q 047221 247 KKGIWRVVEVLNQVGGSCLVSGVRALIEMFS---------VLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFK 313 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~ 313 (509)
.++|..++++..+.. +-+...|..+..+|. ..+++++|...+++. +.+..+|..+...+...|+++
T Consensus 277 ~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 277 LQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 556677777666543 223344555544443 223467777777764 446777777777777888888
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047221 314 GPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD-AITYEIFIVYSCRVGKFDVAFNFFNQM 392 (509)
Q Consensus 314 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 392 (509)
+|...|++..+.+ +.+...+..+..++...|++++|...+++..+.. |+ ...+..++..+...|++++|...++++
T Consensus 356 ~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 356 VGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8888888877664 3345567777777888888888888888877753 33 222333444455677888888888777
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCcCH
Q 047221 393 VKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN-GLRPNV 471 (509)
Q Consensus 393 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~ 471 (509)
.+...+-+...+..+..+|...|+.++|...+.++.... ..+....+.+...|+..| ++|...++++.+. .-.+..
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 655322234456667777778888888888887765442 122334445555566666 4677766666552 222322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 472 SVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 472 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
.-+..++ +.-.|+-+.+... +++.+.+
T Consensus 510 ~~~~~~~--~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 510 PGLLPLV--LVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chHHHHH--HHHHhhhHHHHHH-HHhhccc
Confidence 2333333 3334555555444 6665443
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.21 E-value=2e-08 Score=103.89 Aligned_cols=261 Identities=11% Similarity=0.030 Sum_probs=180.9
Q ss_pred ChhHHHHHHHHHhc-----cCCHHHHHHHHHHhhhCCCccCHH-HHHHHHHHHHh--------ccCCHHHHHHHHHHHHH
Q 047221 194 NSDICSLVIDNCGR-----LDDYETMRQLLNDFNVYQVCLNEK-AFGFLPVLISS--------KALTKKGIWRVVEVLNQ 259 (509)
Q Consensus 194 ~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~~~~p~~~-~~~~ll~~~~~--------~~~~~~~a~~~~~~m~~ 259 (509)
+...|...+.+... .+++++|..+|++..+. .|+.. .|..+-.++.. ..++.++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44466666666322 23467899999988655 45443 33333222211 22347899999999887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCCh-HHH
Q 047221 260 VGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPIT-LTY 334 (509)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 334 (509)
.. +.+...+..+..++...|++++|...|++. +.+...|..+...+...|++++|+..+++..+.. |+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence 65 456778888999999999999999999885 4557788999999999999999999999998764 442 233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Q 047221 335 NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR-LATHAAFIKGYFI 413 (509)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~ 413 (509)
..++..+...|++++|...+++..+...+-+...+..+..++...|+.++|...++++... .|+ ....+.+...|+.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence 3445557778999999999999876532224555777778888999999999999987655 333 4455666667777
Q ss_pred cCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 047221 414 FYRYEDAYKYVVLSADK-YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNG 466 (509)
Q Consensus 414 ~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 466 (509)
.| ++|...++.+.+. ...+....+ +-..|.-.|+.+.+..+ +++.+.|
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 4777777776653 222222222 44445566777766666 8877654
No 48
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.19 E-value=7.1e-07 Score=91.06 Aligned_cols=336 Identities=13% Similarity=0.056 Sum_probs=249.0
Q ss_pred CCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHH
Q 047221 157 SLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFG 234 (509)
Q Consensus 157 ~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 234 (509)
+.....|-.+-..+-+.|+ +++..+-.+..+.|. |...|-.+.....+.|.++.|.-.|.+..+.. |+..-+-
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~ 244 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---DYELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELI 244 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHH
Confidence 3455677888888888887 677666666777774 45799999999999999999999999997764 4443322
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHcC------CCHHHHHHHHH
Q 047221 235 FLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVR----ALIEMFSVLGLYEMAKYVIKKTE------RKVSYYNILIK 304 (509)
Q Consensus 235 ~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~------~~~~~~~~li~ 304 (509)
.-=...+.+.|+...|..-|.++.....+.|..-+- ..+..|...++-+.|.+.++... -+...+|.++.
T Consensus 245 ~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ae 324 (895)
T KOG2076|consen 245 YERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAE 324 (895)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence 222224556777999999999998866544443333 44556777788899998888751 34567899999
Q ss_pred HHHhcCCccHHHHHHHHHHHcCCCCC---------------------------hHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047221 305 EMCRRCDFKGPRDLLVEMRQVGCEPI---------------------------TLTYNYVLGVLCKNGQDADACELLEEM 357 (509)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~g~~p~---------------------------~~t~~~li~~~~~~g~~~~a~~~~~~m 357 (509)
.|.+...++.|......+.....++| ... --++-+..+....+....+..-.
T Consensus 325 l~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l 403 (895)
T KOG2076|consen 325 LFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFL 403 (895)
T ss_pred HHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHH
Confidence 99999999999999998887322222 222 12333445555555566666666
Q ss_pred HhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047221 358 LGRNCHP--DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSS 435 (509)
Q Consensus 358 ~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 435 (509)
.+....| +...|.-+..+|...|++.+|+.+|..+.....--+...|-.+..+|...|..+.|.+.|+....... .+
T Consensus 404 ~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~ 482 (895)
T KOG2076|consen 404 VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DN 482 (895)
T ss_pred HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-Cc
Confidence 6665333 45678889999999999999999999999876555788999999999999999999999999887532 12
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 436 NMLYSLLASLHDKNNNPVMAKNVLSEMM--------KNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
...--.|...+-+.|+.++|.+.+..|. ..+..|+..........+...|+.++-..+...|..
T Consensus 483 ~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 483 LDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2233456677789999999999999864 335677777777778888999999987777776664
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=5.3e-08 Score=91.95 Aligned_cols=273 Identities=9% Similarity=0.013 Sum_probs=201.7
Q ss_pred HHHHhccCCHHHHHHHHHHhhhCCC--ccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 047221 202 IDNCGRLDDYETMRQLLNDFNVYQV--CLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVL 279 (509)
Q Consensus 202 i~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (509)
..+.-...+++.|+.+|+++.+... --|..+|..++-.-- -...+..+.+-...-.+--..|...+.+-|+-.
T Consensus 269 A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~-----~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr 343 (559)
T KOG1155|consen 269 AAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKN-----DKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR 343 (559)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHh-----hhHHHHHHHHHHHHhccCCccceeeehhHHHHH
Confidence 3344567899999999999987732 126678877765211 112222222222111233356778899999999
Q ss_pred CCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 047221 280 GLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355 (509)
Q Consensus 280 g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 355 (509)
++.+.|...|++. +.....|+.|.+-|....+...|++-++...+-. +.|-..|-.|..+|.-.+...-|+-.|+
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 9999999999985 4457899999999999999999999999999875 7789999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CC
Q 047221 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSAD----KY 431 (509)
Q Consensus 356 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~ 431 (509)
+..+- -+-|...|.+|-.+|.+.++.++|++.|......| ..+...+..|.+.|-+.++.++|-..|+.-.+ .|
T Consensus 423 kA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg 500 (559)
T KOG1155|consen 423 KALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEG 500 (559)
T ss_pred HHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc
Confidence 98876 24478899999999999999999999999999887 23558899999999999999999998876554 23
Q ss_pred CCCCHH--HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047221 432 KSSSNM--LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 432 ~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 500 (509)
...+.. .-.-|..-+.+.+++++|..+...... . .-..++|..+++++++.
T Consensus 501 ~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~----------------~--~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 501 EIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK----------------G--ETECEEAKALLREIRKI 553 (559)
T ss_pred ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc----------------C--CchHHHHHHHHHHHHHh
Confidence 333322 222244555666777766544433222 1 33456777777776654
No 50
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.17 E-value=7e-08 Score=98.88 Aligned_cols=304 Identities=12% Similarity=0.024 Sum_probs=221.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhC---CCccCH-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVY---QVCLNE-----KAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSG 268 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~---~~~p~~-----~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 268 (509)
..|.+.......|+++.|...|...... ...+|. .|....+..+....++.+.|.+++..+.+.. +.-+..
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ 532 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDA 532 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHH
Confidence 7899999999999999999999987655 122333 3445556667777777999999999988753 222333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcC-CCCChHHHHHHHHHHHh
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVG-CEPITLTYNYVLGVLCK 343 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~ 343 (509)
|--|+.+....+...+|...+... ..+...|+.+...+.+...+..|.+-|....+.- ..+|..+.-+|.+.|..
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 444444444456777888888775 4567788888889999999999999887766542 23566666666665543
Q ss_pred ------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047221 344 ------------NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411 (509)
Q Consensus 344 ------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (509)
.+..++|+++|....+. -+.|.+.-|-+--.++..|++.+|.++|.++.+... -+..+|-.+.++|
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCY 690 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhc-CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHH
Confidence 35577899999988876 345777777788888999999999999999988753 2456788899999
Q ss_pred HHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH----------
Q 047221 412 FIFYRYEDAYKYVVLSADK-YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKH---------- 480 (509)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~---------- 480 (509)
..+|++-.|.++|+..... +-.-+....+.|..++.+.|.+.+|.+...........-....|+..+-.
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~ 770 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRL 770 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhc
Confidence 9999999999999976554 55567788899999999999999999988877664333233334433221
Q ss_pred --------HHhcCCHHHHHHHHHHHHhCCCC
Q 047221 481 --------LHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 481 --------~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
....+..+.|.++|.+|.+.+-+
T Consensus 771 ~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 771 EKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 11234567888889888877655
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=8.5e-08 Score=90.13 Aligned_cols=186 Identities=12% Similarity=-0.016 Sum_probs=126.7
Q ss_pred cCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047221 309 RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNF 388 (509)
Q Consensus 309 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 388 (509)
+|++++|.+.|++.....-.-....||+ --.+-..|++++|++.|-.+..- +.-+..+...+...|.-..+...|+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4788888888888876542222333333 23466788889988888776543 223566666777778778888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 047221 389 FNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLR 468 (509)
Q Consensus 389 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 468 (509)
+.+.... ++-|......|.+.|-+.|+-..|++..-+-- +-+..+..+..-|..-|....-+++++.+|++..- +.
T Consensus 581 ~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy-ryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 581 LMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY-RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc-cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 8766543 44467777888888888888777777653321 23445666777777777777777778877777654 67
Q ss_pred cCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhC
Q 047221 469 PNVSVYRRVLKHL-HTSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 469 p~~~t~~~ll~~~-~~~g~~~~a~~~~~~m~~~ 500 (509)
|+..-|..++..| .+.|.+.+|.++++...+.
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 7777777777655 4577788887777776654
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=6.6e-08 Score=90.87 Aligned_cols=276 Identities=11% Similarity=0.019 Sum_probs=201.9
Q ss_pred HHhccCCHHHHHHHHHHhhhCCCccCHHHHHHH-HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047221 204 NCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFL-PVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLY 282 (509)
Q Consensus 204 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (509)
.|.+.|+++.|.+++.-.....-+.-...-+.+ +-.++..+.++..|.++-+...... .-+......-.+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 467889999999999887666433222222222 2224445566777777766655422 22233333333344457899
Q ss_pred HHHHHHHHHc-CCCHHHHHH---HHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047221 283 EMAKYVIKKT-ERKVSYYNI---LIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358 (509)
Q Consensus 283 ~~A~~~~~~m-~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 358 (509)
+.|...+++. ..|...-.+ +.-.+-..|++++|++.|-++..- +.-+..+..-+.+.|-...+...|.+++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 9999999886 444322222 233567789999999999877643 23456677788888999999999999987765
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047221 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNML 438 (509)
Q Consensus 359 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 438 (509)
.. ++-|.....-|...|-+.|+-..|.+.+-+--+- ++-+..|..-|..-|....-+++|...|++.. -+.|+..-
T Consensus 586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~k 661 (840)
T KOG2003|consen 586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSK 661 (840)
T ss_pred cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHH
Confidence 54 5667888999999999999999999987665443 45578888889999999999999999998753 46899999
Q ss_pred HHHHHHHHH-hCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 047221 439 YSLLASLHD-KNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQ 486 (509)
Q Consensus 439 ~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 486 (509)
|..||..|. +.|++.+|.++|+..... ++-|.....-|++.|...|.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 999987665 689999999999998765 77788888888888877775
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=3.2e-08 Score=98.18 Aligned_cols=233 Identities=15% Similarity=0.136 Sum_probs=141.9
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhhC-----C-CccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047221 196 DICSLVIDNCGRLDDYETMRQLLNDFNVY-----Q-VCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGV 269 (509)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 269 (509)
.+...+...|...|+++.|+.+++...+. | ..|...+. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~-----------------------------------l 244 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASM-----------------------------------L 244 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHH-----------------------------------H
Confidence 35566888899999999999998887543 1 01111111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHc--------CC----CHHHHHHHHHHHHhcCCccHHHHHHHHHHH-----cCC-CCCh
Q 047221 270 RALIEMFSVLGLYEMAKYVIKKT--------ER----KVSYYNILIKEMCRRCDFKGPRDLLVEMRQ-----VGC-EPIT 331 (509)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m--------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~p~~ 331 (509)
+.+...|...+++++|..+|+++ .+ -..+++.|...|.+.|++++|...+++..+ .|. .|.+
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 23445555555555555555543 11 134455555566666666666555554331 121 2222
Q ss_pred H-HHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-----C--
Q 047221 332 L-TYNYVLGVLCKNGQDADACELLEEMLGR---NCHP----DAITYEIFIVYSCRVGKFDVAFNFFNQMVKR-----G-- 396 (509)
Q Consensus 332 ~-t~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-- 396 (509)
. -++.+...|+..+++++|..++....+. -..+ -..+++.|-..|.+.|++++|+++|++.+.. |
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 2 3455666777788888887777754432 1111 2357888888888888888888888877643 1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047221 397 LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSAD----KYK--SSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 397 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 463 (509)
..-....++.|...|.+.++.++|.++|.+-.. .|. +-...+|..|...|...|++++|.++.+...
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 111244567777888888888888887765432 222 2234578888888888888888888877665
No 54
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=1.5e-07 Score=93.44 Aligned_cols=238 Identities=18% Similarity=0.155 Sum_probs=176.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-----------CCCH-HHHHHHHHHHHhcCCccHHHHHHHHHHHc---
Q 047221 261 GGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT-----------ERKV-SYYNILIKEMCRRCDFKGPRDLLVEMRQV--- 325 (509)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-----------~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 325 (509)
+.+--..+...|..+|...|+++.|+.+++.. .+.+ ...+.+...|...+++++|..+|+++...
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33434456667999999999999999998773 1222 23345777899999999999999988742
Q ss_pred CCCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047221 326 GCEPI----TLTYNYVLGVLCKNGQDADACELLEEMLGR-----NC-HPDAI-TYEIFIVYSCRVGKFDVAFNFFNQMVK 394 (509)
Q Consensus 326 g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 394 (509)
..-++ ..+++.|-.+|.+.|++++|...+++..+- |. .|.+. .++.+...|+..+++++|..+++...+
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 12222 456777888899999999988877765432 22 23333 366777888999999999999987653
Q ss_pred C---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 047221 395 R---GLQPR----LATHAAFIKGYFIFYRYEDAYKYVVLSADK-----Y--KSSSNMLYSLLASLHDKNNNPVMAKNVLS 460 (509)
Q Consensus 395 ~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 460 (509)
. -..++ ..+++.|-..|.+.|++++|+++++..... | ..-....++.|...|.+.++..+|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 2 12222 467999999999999999999999987743 1 11224567889999999999999999998
Q ss_pred HHHH----CCC-CcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 461 EMMK----NGL-RPN-VSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 461 ~m~~----~g~-~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
+... .|. .|+ ..+|..|...|...|++++|.++.+...
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 7654 232 223 3579999999999999999999988776
No 55
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.07 E-value=4.8e-07 Score=92.95 Aligned_cols=330 Identities=10% Similarity=0.019 Sum_probs=206.2
Q ss_pred HHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccC----CHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 047221 165 EILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLD----DYETMRQLLNDFNVYQVCLNEKAFGFLPV 238 (509)
Q Consensus 165 ~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 238 (509)
-+-..+...|+ .|...|+.+....|+.. ++.-.|-..|+..+ ..+.|..++.+..+.- .-|...|-.+-.
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~p~~~---etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQLPNNY---ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhCcchH---HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 34445556664 67777777755556532 24444555555443 4566666666665443 234555554444
Q ss_pred HHHhccCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--------CCCHH------HHH
Q 047221 239 LISSKALTKKGIWRVVEV----LNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT--------ERKVS------YYN 300 (509)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~----m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~~~------~~~ 300 (509)
.+...+ ...++.++.. +...+..+.....|.+...+...|.++.|...|+.. .+|.. +--
T Consensus 423 -l~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y 500 (1018)
T KOG2002|consen 423 -LLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY 500 (1018)
T ss_pred -HHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence 333333 3333544443 334455566667777777777777777777776553 12211 111
Q ss_pred HHHHHHHhcC----------------------------------CccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 047221 301 ILIKEMCRRC----------------------------------DFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ 346 (509)
Q Consensus 301 ~li~~~~~~g----------------------------------~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 346 (509)
.+...+-..+ ...+|...+++..+.. .-+...++.+...+.+...
T Consensus 501 Nlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 501 NLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhh
Confidence 1222222233 4445555555544332 3334444445555666666
Q ss_pred hHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 047221 347 DADACELLEEMLGR-NCHPDAITYEIFIVYSCR------------VGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFI 413 (509)
Q Consensus 347 ~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 413 (509)
+..|.+-|....+. ...+|..+.-+|-+.|.+ .+..++|+++|.++.+.. +-|...-|.+--.++.
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAE 658 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhh
Confidence 66666655554443 122566666666554432 245788999999988763 4477888889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 047221 414 FYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN-GLRPNVSVYRRVLKHLHTSHQEHMAKC 492 (509)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~ 492 (509)
+|++.+|..+|.++.+... -+..+|-.+.++|...|++..|+++|+...+. .-.-+..+...|.+++.+.|++.+|.+
T Consensus 659 kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 659 KGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred ccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999988754 23345778999999999999999999987764 445577789999999999999999998
Q ss_pred HHHHHHhCCCC
Q 047221 493 LSSRYSSLSLG 503 (509)
Q Consensus 493 ~~~~m~~~~~~ 503 (509)
.+.......+.
T Consensus 738 ~ll~a~~~~p~ 748 (1018)
T KOG2002|consen 738 ALLKARHLAPS 748 (1018)
T ss_pred HHHHHHHhCCc
Confidence 88776655443
No 56
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=8.2e-08 Score=86.73 Aligned_cols=235 Identities=11% Similarity=-0.005 Sum_probs=192.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHH-HHHH
Q 047221 263 SCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY-NYVL 338 (509)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li 338 (509)
..|-+.-+.+..+|.+.|.+.+|++-|+.- .+-+.||-.|-..|.+..+.+.|+.+|.+-.+. .|..+|| ..+.
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 334444478999999999999999999885 577889999999999999999999999988765 5666666 4577
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 047221 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418 (509)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 418 (509)
..+-..++.++|.+++++..+. .+.++....++..+|.-.++.+-|+..++.+...|+. +...|+.+--+|.-.++++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 7888899999999999998887 3456777778888899999999999999999999966 6778888888888899999
Q ss_pred HHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047221 419 DAYKYVVLSADKYKSSSN--MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSR 496 (509)
Q Consensus 419 ~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 496 (509)
-++--|.+....--.|+. ..|-.|.......|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++.
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 999999887765444433 357778888888999999999999887643 23456788887777899999999999998
Q ss_pred HHhCCC
Q 047221 497 YSSLSL 502 (509)
Q Consensus 497 m~~~~~ 502 (509)
..+..+
T Consensus 455 A~s~~P 460 (478)
T KOG1129|consen 455 AKSVMP 460 (478)
T ss_pred hhhhCc
Confidence 776543
No 57
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.03 E-value=3.6e-06 Score=78.60 Aligned_cols=281 Identities=13% Similarity=0.044 Sum_probs=207.5
Q ss_pred hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHH
Q 047221 176 SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVE 255 (509)
Q Consensus 176 ~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 255 (509)
.|.++...-....+. ....|-.-+.+--+.|+.+.+-..+.+..+.--.++...+-+...... ..++.+.|..-+.
T Consensus 102 qAEkl~~rnae~~e~---p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll-~~~d~~aA~~~v~ 177 (400)
T COG3071 102 QAEKLLRRNAEHGEQ---PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL-NRRDYPAARENVD 177 (400)
T ss_pred HHHHHHHHhhhcCcc---hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-hCCCchhHHHHHH
Confidence 677777666221121 112455556677788999999999999876633444445555555334 4455899999888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC-----C-------HHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 047221 256 VLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTER-----K-------VSYYNILIKEMCRRCDFKGPRDLLVEMR 323 (509)
Q Consensus 256 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (509)
++.+.+ +-...+......+|.+.|++.....++.++.. | ..+|+.++.-....+..+.-...+++..
T Consensus 178 ~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 888876 44567789999999999999999999998831 1 4578888887777776666666666655
Q ss_pred HcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047221 324 QVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT 403 (509)
Q Consensus 324 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 403 (509)
.. .+-+...-.+++.-+.++|+.++|.++..+..+.+..|+. ...-.+.+.++.+.-++..++..+. .+-+...
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L 330 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLL 330 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCChhH
Confidence 43 3455666677888899999999999999999998776662 2223456778887777777766554 2334577
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc
Q 047221 404 HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP 469 (509)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 469 (509)
+.+|-..|.+.+.|.+|...|+...+ ..|+..+|+.+..++.+.|+..+|.+++++....-..|
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 88899999999999999999996554 47899999999999999999999999999876543333
No 58
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.02 E-value=1.1e-05 Score=79.82 Aligned_cols=342 Identities=10% Similarity=0.017 Sum_probs=184.1
Q ss_pred CCCCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHH
Q 047221 154 MSVSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEK 231 (509)
Q Consensus 154 ~~~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~ 231 (509)
.|+..+...|-.=-..|-..|. .+..+...+.|+.-+..---.+|+.-...|.+.+.++-|+.+|....+- ++-+..
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~s 551 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKS 551 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhH
Confidence 3555555554444444444442 3444444443333222223347777777888888888888888776543 122334
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHH
Q 047221 232 AFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMC 307 (509)
Q Consensus 232 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~ 307 (509)
.|.-... .-...|..++...+++.....- +-....|-....-+-..|++..|..++.+. +.+...|-+-+..-.
T Consensus 552 lWlra~~-~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~ 629 (913)
T KOG0495|consen 552 LWLRAAM-FEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHH-HHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhh
Confidence 4444443 3445555777777777776542 333444555556666677877777776664 455677777777777
Q ss_pred hcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC---------------------------
Q 047221 308 RRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR--------------------------- 360 (509)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------------- 360 (509)
.+..+++|..+|.+.+.. .|+...|.--+..-.-.++.++|.+++++..+.
T Consensus 630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 777777777777776653 455566655555555566667777666665543
Q ss_pred ------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 047221 361 ------NCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK---- 430 (509)
Q Consensus 361 ------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 430 (509)
.++-....|-.|.+.--+.|.+-.|..+++...-.+ +-|...|-..|.+=.+.|+.+.|..+..+..+.
T Consensus 708 Y~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 708 YLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred HHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 012223334444444444455555555555544432 224555566666666666666666555544422
Q ss_pred C-------------------------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 047221 431 Y-------------------------KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSH 485 (509)
Q Consensus 431 ~-------------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 485 (509)
| +.-|.+..-.+...+-...++++|.+.|.+..+.+ .-+..+|.-+..-+.++|
T Consensus 787 g~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHG 865 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhC
Confidence 0 01122233333344444445555555555554421 112234555555555555
Q ss_pred CHHHHHHHHHHHHhCCC
Q 047221 486 QEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 486 ~~~~a~~~~~~m~~~~~ 502 (509)
.-+.-.+++++.....+
T Consensus 866 ~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 866 TEEDQKEVLKKCETAEP 882 (913)
T ss_pred CHHHHHHHHHHHhccCC
Confidence 55555555555544433
No 59
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.01 E-value=1.4e-06 Score=87.72 Aligned_cols=287 Identities=12% Similarity=0.021 Sum_probs=172.4
Q ss_pred HHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---
Q 047221 203 DNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVL--- 279 (509)
Q Consensus 203 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--- 279 (509)
..+...|++++|++.+++- .+.-+|...+.-...-++.+.|+.++|..++..+.+.+ +.+..-|..|..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~--~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKN--EKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhh--hhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 3456677788887777664 23345666666666656667777788888888877765 23333344555554222
Q ss_pred --CCHHHHHHHHHHcC---CCHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 047221 280 --GLYEMAKYVIKKTE---RKVSYYNILIKEMCRRCDFK-GPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACEL 353 (509)
Q Consensus 280 --g~~~~A~~~~~~m~---~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 353 (509)
...+....+++++. |...+...+.-.+.....++ .+...+..+...|++ .+|+.|-..|....+.+-..++
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHH
Confidence 24566666666651 22122111211122111222 334445566666754 3455666666655555555555
Q ss_pred HHHHHhC----C----------CCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 047221 354 LEEMLGR----N----------CHPDAI--TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR-LATHAAFIKGYFIFYR 416 (509)
Q Consensus 354 ~~~m~~~----g----------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~ 416 (509)
+...... | -.|+.. ++.-+...|-..|++++|++++++.++. .|+ +..|..-...|-+.|+
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC
Confidence 5554432 1 123432 3444556677788888888888888776 455 5567777788888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHH--------HHHHHHHHhcCCHH
Q 047221 417 YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY--------RRVLKHLHTSHQEH 488 (509)
Q Consensus 417 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~~g~~~ 488 (509)
+++|.+.++.....+. -|...=+-.+..+.++|+.++|.+++......+..|-...+ .-...+|.+.|++.
T Consensus 244 ~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 244 LKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 8888888887776642 24444455566667888888888888887766543322211 33455778888888
Q ss_pred HHHHHHHHHH
Q 047221 489 MAKCLSSRYS 498 (509)
Q Consensus 489 ~a~~~~~~m~ 498 (509)
.|++-|..+.
T Consensus 323 ~ALk~~~~v~ 332 (517)
T PF12569_consen 323 LALKRFHAVL 332 (517)
T ss_pred HHHHHHHHHH
Confidence 8887766654
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.97 E-value=8e-07 Score=84.34 Aligned_cols=221 Identities=11% Similarity=0.015 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHH
Q 047221 247 KKGIWRVVEVLNQVG-GSC--LVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLL 319 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (509)
.+.+..-+.++.... ..| ....|..+...|.+.|+.++|...|++. +.+...|+.+...|...|++++|.+.|
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555322 122 2345777888888899999998888875 456788999999999999999999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 047221 320 VEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP 399 (509)
Q Consensus 320 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 399 (509)
++..+.. +-+..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|.+..... .+
T Consensus 122 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~ 197 (296)
T PRK11189 122 DSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DK 197 (296)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Cc
Confidence 9888653 234667788888888899999999999888875 3433222222223345678899999997655432 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHH
Q 047221 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADK---YK--SS-SNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSV 473 (509)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 473 (509)
+...+ .+.. ...|+...+ +.+..+.+. .. .| ....|..+...+.+.|++++|+..|++..+.+ .||.+-
T Consensus 198 ~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e 272 (296)
T PRK11189 198 EQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVE 272 (296)
T ss_pred cccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHH
Confidence 32222 2333 234554443 244444321 11 11 23478889999999999999999999988753 235544
Q ss_pred HHH
Q 047221 474 YRR 476 (509)
Q Consensus 474 ~~~ 476 (509)
+..
T Consensus 273 ~~~ 275 (296)
T PRK11189 273 HRY 275 (296)
T ss_pred HHH
Confidence 444
No 61
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.96 E-value=7.2e-06 Score=80.40 Aligned_cols=302 Identities=7% Similarity=-0.056 Sum_probs=173.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCC-CccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH---H
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVYQ-VCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRA---L 272 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~---l 272 (509)
.|..+...+...|+.+.+.+.+....+.. ..++......+-.......|+.++|..+++...+.. +.+...+.. +
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 55666666666677777666665543322 122333333333333445566888888888877653 333444432 2
Q ss_pred HHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChH
Q 047221 273 IEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDA 348 (509)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 348 (509)
.......|..+.+.+.++.. +........+...+...|++++|.+.+++..+.. +.+...+..+...|...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 22222345556666666543 1224455566677888888889999888888764 444667777888888889999
Q ss_pred HHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCHHHHH
Q 047221 349 DACELLEEMLGRNC-HPDA--ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL-QPRLATH-A--AFIKGYFIFYRYEDAY 421 (509)
Q Consensus 349 ~a~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~A~ 421 (509)
+|...+++..+... .++. ..|..+...+...|+.++|..++++...... .+..... + .++.-+...|..+.+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99888888776421 2232 3455677788888999999999888754322 1222211 1 2333334444333333
Q ss_pred HH---HHHHHhCCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC------cCHHHHHHHHH--HHHhcCCHHH
Q 047221 422 KY---VVLSADKYK-SSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLR------PNVSVYRRVLK--HLHTSHQEHM 489 (509)
Q Consensus 422 ~~---~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~------p~~~t~~~ll~--~~~~~g~~~~ 489 (509)
++ ...-..... ............++...|+.++|.++++.+...... ....+-..++. ++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 32 111111100 111122225666777888899999998888663221 01112222333 3457889999
Q ss_pred HHHHHHHHHhC
Q 047221 490 AKCLSSRYSSL 500 (509)
Q Consensus 490 a~~~~~~m~~~ 500 (509)
|.+++......
T Consensus 326 A~~~L~~al~~ 336 (355)
T cd05804 326 ALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHH
Confidence 98888776644
No 62
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.95 E-value=2.9e-05 Score=76.88 Aligned_cols=280 Identities=13% Similarity=0.033 Sum_probs=179.0
Q ss_pred HHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHH-HHHHHHHHHHhccCCHHHHHHHHH
Q 047221 177 ALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEK-AFGFLPVLISSKALTKKGIWRVVE 255 (509)
Q Consensus 177 A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~ 255 (509)
|..+|.......|. +...|...+..=-..|..+....+|++....- |... .|-....-.. ..|++..|..++.
T Consensus 535 arAVya~alqvfp~---k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w-~agdv~~ar~il~ 608 (913)
T KOG0495|consen 535 ARAVYAHALQVFPC---KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKW-KAGDVPAARVILD 608 (913)
T ss_pred HHHHHHHHHhhccc---hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHH-hcCCcHHHHHHHH
Confidence 45555555444442 33466666665566677777777777776542 2222 2222222222 3355777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHc-------
Q 047221 256 VLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV------- 325 (509)
Q Consensus 256 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------- 325 (509)
...+... -+...|-+.+..-....+++.|..+|.+. .++...|..-+..-.-.++.++|++++++..+.
T Consensus 609 ~af~~~p-nseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl 687 (913)
T KOG0495|consen 609 QAFEANP-NSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKL 687 (913)
T ss_pred HHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHH
Confidence 6665442 25566666667777777777777777664 344444544444444455555555555544332
Q ss_pred -----------------------C---CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047221 326 -----------------------G---CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRV 379 (509)
Q Consensus 326 -----------------------g---~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 379 (509)
| ++-..-.|-.|...=-+.|.+-.|..+++...-.+ +-|...|-..|.+-.+.
T Consensus 688 ~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~ 766 (913)
T KOG0495|consen 688 WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRA 766 (913)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHc
Confidence 1 12223344555555556788888888988877663 44788999999999999
Q ss_pred CChHHHHHHHHHHHHC----C-------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 380 GKFDVAFNFFNQMVKR----G-------------------------LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 380 g~~~~a~~~~~~m~~~----g-------------------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
|..+.|..+..+..+. | +.-|..+.-++...+....++++|.+.|.+....
T Consensus 767 gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~ 846 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK 846 (913)
T ss_pred CCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999998877653 1 1223333445555566677899999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 431 YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 431 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
+ ..+..+|.-+...+.++|.-++-.+++......
T Consensus 847 d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 847 D-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred C-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4 334567888999999999999999999988763
No 63
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=3.4e-06 Score=82.00 Aligned_cols=282 Identities=10% Similarity=0.042 Sum_probs=212.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047221 194 NSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALI 273 (509)
Q Consensus 194 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 273 (509)
+.+..-.-..-+-..+++.+..++++...+.. ++....+..-|. |+-..++..+-..+=..|.+. .+-...+|-++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia-~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIA-CLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHH-HHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 34466666777888999999999999987653 455666666677 444444355555555555543 355677899999
Q ss_pred HHHHhcCCHHHHHHHHHHc---CCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHH
Q 047221 274 EMFSVLGLYEMAKYVIKKT---ERK-VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDAD 349 (509)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 349 (509)
--|.--|+..+|++.|.+. .+. ...|-.....|+-.|..|+|+..+...-+.= +-...-+--+.--|.+.++.+.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 9999899999999999884 443 6789999999999999999999887665431 1111122233445888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047221 350 ACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR------GLQPRLATHAAFIKGYFIFYRYEDAYKY 423 (509)
Q Consensus 350 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~ 423 (509)
|.+.|.+.... .+-|...++-+--...+.+.+.+|..+|+..... ...-...+++.|-++|.+.+..++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999887765 3446667777766666789999999999877622 1112456789999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 047221 424 VVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHT 483 (509)
Q Consensus 424 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 483 (509)
+++..... .-+..++.++.-.|...|+++.|++.|.+..- +.||..+-..++..+..
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 99887653 34778899999999999999999999998774 88999888888876643
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.87 E-value=9.5e-07 Score=83.84 Aligned_cols=218 Identities=11% Similarity=-0.025 Sum_probs=155.0
Q ss_pred CCHHHHHHHHHHc----CC----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHH
Q 047221 280 GLYEMAKYVIKKT----ER----KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADAC 351 (509)
Q Consensus 280 g~~~~A~~~~~~m----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 351 (509)
+..+.+..-+.++ +. ....|..+...|.+.|+.++|...|++..+.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3455555555443 21 24568888889999999999999999998864 446789999999999999999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 352 ELLEEMLGRNCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 352 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
..|+...+. .| +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|++....
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 999999875 34 4677888888899999999999999998876 343322222222334567899999999765543
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC---CC--Cc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047221 431 YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN---GL--RP-NVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGS 504 (509)
Q Consensus 431 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 504 (509)
. .++...+ .......|+..++ +.++.+.+. .. .| ....|..+...+.+.|++++|+..|++..+.++..
T Consensus 195 ~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 L-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred C-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 2 2332222 2233346666554 355555432 11 11 23578888999999999999999999999887655
Q ss_pred Ccc
Q 047221 505 SVE 507 (509)
Q Consensus 505 ~~~ 507 (509)
.++
T Consensus 270 ~~e 272 (296)
T PRK11189 270 FVE 272 (296)
T ss_pred HHH
Confidence 443
No 65
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1.3e-05 Score=76.79 Aligned_cols=194 Identities=11% Similarity=-0.001 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR 378 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 378 (509)
|--+...|.+..+-++....|++....+ +-|..+|..-...+.-.+++++|..=|++.+... +-+...|--+..+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHH
Confidence 3334444444444444445554444433 2233334333333444445555555555554431 1133445455555556
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-----CCCHHHH--HHHHHHHHhCCC
Q 047221 379 VGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYK-----SSSNMLY--SLLASLHDKNNN 451 (509)
Q Consensus 379 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~p~~~~~--~~li~~~~~~g~ 451 (509)
.+++++++..|++.+++ .+--...|+-....+...+++++|.+.|+...+... ..+...+ -+++..- -.++
T Consensus 441 ~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d 518 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhh
Confidence 66777777777776655 333456666666777777777777777766554311 1111111 1111111 2266
Q ss_pred hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047221 452 PVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRY 497 (509)
Q Consensus 452 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 497 (509)
+..|.+++++..+..-+ -...|.+|...-.+.|+.++|+++|++-
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 66677777766653211 2235677777777777788887777764
No 66
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.86 E-value=2.8e-05 Score=74.13 Aligned_cols=313 Identities=13% Similarity=0.053 Sum_probs=183.2
Q ss_pred hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHH
Q 047221 176 SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVE 255 (509)
Q Consensus 176 ~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 255 (509)
-|.++|+.--...|+.. .|++.|+.=.+.+.++.|..+++...-. .|+..+|--... .-.+.|....+..+++
T Consensus 159 gaRqiferW~~w~P~eq----aW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyar-FE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 159 GARQIFERWMEWEPDEQ----AWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYAR-FEEKHGNVALARSVYE 231 (677)
T ss_pred HHHHHHHHHHcCCCcHH----HHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHH-HHHhcCcHHHHHHHHH
Confidence 47788876656666666 8888888888888888888888876433 477777766555 4445566777777777
Q ss_pred HHHHc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH----cCC-----------------------------------
Q 047221 256 VLNQV-GG-SCLVSGVRALIEMFSVLGLYEMAKYVIKK----TER----------------------------------- 294 (509)
Q Consensus 256 ~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~----------------------------------- 294 (509)
...+. |- ..+...+.+...-=.++..++.|.-+|+- ++.
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 66542 11 01111222222222334455555555432 222
Q ss_pred ---------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCCh--HHH--------HHHHHHHHhcCChHHHHHHHH
Q 047221 295 ---------KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPIT--LTY--------NYVLGVLCKNGQDADACELLE 355 (509)
Q Consensus 295 ---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~--------~~li~~~~~~g~~~~a~~~~~ 355 (509)
|-.+|-..+..--..|+.+...++|++.... ++|-. ..| |-.+-.=....+++.+.++++
T Consensus 312 E~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 312 EKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2334444444444555666666666555543 23311 011 111111123455566666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHH----HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 356 EMLGRNCHPDAITYEIFIVYSC----RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 356 ~m~~~g~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
...+. ++-...||.-+=-.|+ ++.++..|.+++...+ |..|-..++..-|..=.+.+.++.+..++++..+-+
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 65552 3334445544433333 4566666766666555 556777777777777777778888888887777654
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047221 432 KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNG-LRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 432 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 500 (509)
+-+..+|.-....-...|+.+.|..+|+-.+++. +......|.+.|+-=...|.++.|..+++++.+.
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 2255667776666677788888888888777642 2223345555555556778888888888887754
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.82 E-value=3.3e-05 Score=75.69 Aligned_cols=259 Identities=10% Similarity=-0.029 Sum_probs=162.0
Q ss_pred HHHHhccCCHHHHHHHHHHhhhCCCccC-HHHHHH---HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047221 202 IDNCGRLDDYETMRQLLNDFNVYQVCLN-EKAFGF---LPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFS 277 (509)
Q Consensus 202 i~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~---ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~ 277 (509)
...+...|++++|.+++++..+.. |+ ...+.. ... .....+....+.+.+.. .....+........+...+.
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~-~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~ 125 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAFG-LGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLE 125 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHH-hcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHH
Confidence 445677899999999999987653 43 333332 111 11123445555555554 21222333445567778899
Q ss_pred hcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCC-CCCh--HHHHHHHHHHHhcCChHHH
Q 047221 278 VLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC-EPIT--LTYNYVLGVLCKNGQDADA 350 (509)
Q Consensus 278 ~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~t~~~li~~~~~~g~~~~a 350 (509)
..|++++|...+++. +.+...+..+...|...|++++|...+++.....- .++. ..|..+...+...|++++|
T Consensus 126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999885 55677888999999999999999999998876531 2332 3455788889999999999
Q ss_pred HHHHHHHHhCCC-CCCHHHH-H--HHHHHHHHcCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 047221 351 CELLEEMLGRNC-HPDAITY-E--IFIVYSCRVGKFDVAFNF--FNQMVKRGL--QPRLATHAAFIKGYFIFYRYEDAYK 422 (509)
Q Consensus 351 ~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~ 422 (509)
.+++++...... .+..... + .++.-+...|....+.++ ......... ............++...|+.+.|..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 999999865432 1222211 2 233333444544433333 211111111 1112222356667788899999999
Q ss_pred HHHHHHhCCCC------C--CHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 423 YVVLSADKYKS------S--SNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 423 ~~~~m~~~~~~------p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+++.+...... . .....-...-++...|+.++|.+.+.+...
T Consensus 286 ~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 286 LLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99988763322 0 122222333345588999999999988765
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.81 E-value=2.2e-05 Score=79.24 Aligned_cols=285 Identities=13% Similarity=0.019 Sum_probs=180.1
Q ss_pred HhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHh-----
Q 047221 170 LNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISS----- 242 (509)
Q Consensus 170 ~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~----- 242 (509)
+...|+ .|++.++.-.+.-+|.. .........+.+.|+.++|..++..+..++ |+...|-..+..+..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~---~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKL---AVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 344554 78888877633333322 245777888999999999999999998776 677777666664541
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHc-CCC-HHHHHHHHHHHHhcCCccHHHHHH
Q 047221 243 KALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAK-YVIKKT-ERK-VSYYNILIKEMCRRCDFKGPRDLL 319 (509)
Q Consensus 243 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m-~~~-~~~~~~li~~~~~~g~~~~A~~~~ 319 (509)
.....+....+++.+.+.- |.......+.-.+.....+.... ..+..+ ... +.+|+.|-..|......+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 1124677778888876643 22222222221122111222211 111221 222 245556666666555544455555
Q ss_pred HHHHHc----C----------CCCChH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCh
Q 047221 320 VEMRQV----G----------CEPITL--TYNYVLGVLCKNGQDADACELLEEMLGRNCHPD-AITYEIFIVYSCRVGKF 382 (509)
Q Consensus 320 ~~m~~~----g----------~~p~~~--t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 382 (509)
...... | -.|... ++.-+...|-..|++++|++.+++..+. .|+ +..|..-...+-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCH
Confidence 554422 1 123332 4455667788899999999999988876 566 55777788888899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH------HH--HHHHHHHHhCCChHH
Q 047221 383 DVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM------LY--SLLASLHDKNNNPVM 454 (509)
Q Consensus 383 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~li~~~~~~g~~~~ 454 (509)
.+|.+.++........ |-..-+-.+..+.++|++++|.+++......+..|-.. .| .-...+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999888876422 66677778888889999999999988887766533221 22 344567888899888
Q ss_pred HHHHHHHHHH
Q 047221 455 AKNVLSEMMK 464 (509)
Q Consensus 455 a~~~~~~m~~ 464 (509)
|++.|....+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 8877766543
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=7.7e-07 Score=80.60 Aligned_cols=228 Identities=9% Similarity=-0.046 Sum_probs=164.6
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHH
Q 047221 232 AFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMC 307 (509)
Q Consensus 232 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~ 307 (509)
-|..-|.-|+-+-|...+|+..++.-.+.. |-+.||--|-..|.+-.+.+.|..+|.+- +-|+....-+...+-
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 344444446556666788888777766643 44556667778888888888888887764 334433344666777
Q ss_pred hcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047221 308 RRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFN 387 (509)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 387 (509)
..++.++|.++|++..+.. ..++.....+...|.-.++.+-|++.++++.+-|+. +...|+.+--+|.-.+++|-++.
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 7788888888888877654 456666777777888888888888888888888865 66777777777778888888888
Q ss_pred HHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 388 FFNQMVKRGLQPRL--ATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 388 ~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
-|+.....--.|+. .+|-.|-......|++..|.+.|+-....+ .-+...+|.|.-.-.+.|+.++|..+++...+
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 88877765444443 456667777777888888888887766553 22456788888778888888888888887765
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=2.7e-05 Score=72.99 Aligned_cols=304 Identities=10% Similarity=-0.058 Sum_probs=198.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHhcCC--c--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCC
Q 047221 151 LLSMSVSLSNASVIEILRVLNSEK--V--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQV 226 (509)
Q Consensus 151 l~~~~~~~~~~~~~~ll~~~~~~~--~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 226 (509)
|......+...+....+.++++.. + .|.+.+-.+ .....+..|++....+.+.+...|+.++|+..|++....
T Consensus 185 m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~l-e~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~-- 261 (564)
T KOG1174|consen 185 MHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLML-HDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA-- 261 (564)
T ss_pred hhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHH-HhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--
Confidence 333345555555555666655433 2 344444444 111222346678999999999999999999999987443
Q ss_pred ccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHH
Q 047221 227 CLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNIL 302 (509)
Q Consensus 227 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~l 302 (509)
.|+..+---+-...+...|+.+....+...+.... .-+...|-.-........+++.|..+-++- ++++..|-.-
T Consensus 262 dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilK 340 (564)
T KOG1174|consen 262 NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILK 340 (564)
T ss_pred ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhc
Confidence 34433222222223335555888888777776532 122333434444445566788888777663 4556666666
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHH-cC
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFI-VYSCR-VG 380 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~-~g 380 (509)
...+...++.++|.-.|+...... +-+...|..|+..|...|++.+|.-+-++..+. .+.+..+.+.+- ..|.- ..
T Consensus 341 G~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~ 418 (564)
T KOG1174|consen 341 GRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPR 418 (564)
T ss_pred cHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCch
Confidence 677888899999999998877553 457889999999999999999887766654443 223444444331 22221 12
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 047221 381 KFDVAFNFFNQMVKRGLQPR-LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVL 459 (509)
Q Consensus 381 ~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 459 (509)
--++|..+++.-.+. .|+ ....+.+...+...|..+++..+++.-... .||....+.|...+.....+.+|++.|
T Consensus 419 ~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 419 MREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred hHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 246777777766543 454 456677788888889999999998876654 578888888888888888888998888
Q ss_pred HHHHH
Q 047221 460 SEMMK 464 (509)
Q Consensus 460 ~~m~~ 464 (509)
.....
T Consensus 495 ~~ALr 499 (564)
T KOG1174|consen 495 YKALR 499 (564)
T ss_pred HHHHh
Confidence 87766
No 71
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=1e-08 Score=61.71 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=11.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047221 398 QPRLATHAAFIKGYFIFYRYEDAYKYVVL 426 (509)
Q Consensus 398 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (509)
.||..|||+||++||+.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
No 72
>PF12854 PPR_1: PPR repeat
Probab=98.77 E-value=9.7e-09 Score=61.79 Aligned_cols=32 Identities=41% Similarity=0.933 Sum_probs=17.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047221 361 NCHPDAITYEIFIVYSCRVGKFDVAFNFFNQM 392 (509)
Q Consensus 361 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 392 (509)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
No 73
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=2.4e-07 Score=86.84 Aligned_cols=245 Identities=14% Similarity=0.071 Sum_probs=124.9
Q ss_pred HHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047221 203 DNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLY 282 (509)
Q Consensus 203 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (509)
+-+.-.|++..++.-.+ .....-..+......+..++...+. .+. ++.++.+.. .|.......+...+...++-
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~-~~~---vl~ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQ-YDS---VLSEIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT--HHH---HHHHS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCC-hhH---HHHHhccCC-ChhHHHHHHHHHHHhCccch
Confidence 44455677777775554 2222211122233333333333332 332 333333323 55555554444434333445
Q ss_pred HHHHHHHHHc--CC---CHHHHHH-HHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047221 283 EMAKYVIKKT--ER---KVSYYNI-LIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEE 356 (509)
Q Consensus 283 ~~A~~~~~~m--~~---~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 356 (509)
+.+..-+++. .. +-.++.. ....+...|++++|++++..- .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555443 11 1112222 223445567777777766532 3455556666777777777777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047221 357 MLGRNCHPDAITYEIFIVYSCR----VGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYK 432 (509)
Q Consensus 357 m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 432 (509)
|.+.. .|. +...+..++.. .+.+.+|..+|+++.+. ..++..+.|.+..++...|++++|.+++.+..+.+.
T Consensus 157 ~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~ 232 (290)
T PF04733_consen 157 MQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP 232 (290)
T ss_dssp HHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C
T ss_pred HHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 76642 232 22233333322 23577777777776544 456677777777777777777777777777655432
Q ss_pred CCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHH
Q 047221 433 SSSNMLYSLLASLHDKNNNP-VMAKNVLSEMMK 464 (509)
Q Consensus 433 ~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~ 464 (509)
-+..+...+|......|+. +.+.+++.++..
T Consensus 233 -~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 233 -NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp -CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred -CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 2344555566666666666 556666666655
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=2.1e-05 Score=76.64 Aligned_cols=264 Identities=12% Similarity=0.011 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHcCCCHHHHHHHHHH
Q 047221 230 EKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLY----EMAKYVIKKTERKVSYYNILIKE 305 (509)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~~~~li~~ 305 (509)
..........++ .++++.++..+.+.+.+.. ++....+..-|.++.+.|+- ..+.++.+.-|...++|-++.--
T Consensus 244 ~dll~~~ad~~y-~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLY-YGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHH-HcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 333333344333 4455999999999888753 44555566666688877764 44556666668889999999999
Q ss_pred HHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHHcCCh
Q 047221 306 MCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR--NC-HPDAITYEIFIVYSCRVGKF 382 (509)
Q Consensus 306 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~-~p~~~~~~~li~~~~~~g~~ 382 (509)
|.-.|+..+|.+.|.+..... .-=...|-.....|+-.|..|+|..-+...-+. |. .| ..| +---|.+.+..
T Consensus 322 Yl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LY--lgmey~~t~n~ 396 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLY--LGMEYMRTNNL 396 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHH--HHHHHHHhccH
Confidence 999999999999999877543 222467888888999999999998888766553 22 22 223 22346778999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhCCChHHHH
Q 047221 383 DVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK------YKSSSNMLYSLLASLHDKNNNPVMAK 456 (509)
Q Consensus 383 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~~~a~ 456 (509)
+.|.+.|.+.... .+-|....+-+--.....+.+.+|..+|+..... ...-+..+++.|..+|.+.+++++|+
T Consensus 397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999988754 2446777887777777889999999999877621 11237778999999999999999999
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 457 NVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 457 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
..+++.+.. .+-|..++.++.-.|...|.++.|.+.|.+-.-..+
T Consensus 476 ~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 476 DYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 999999875 345778899998899999999999999987654433
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.70 E-value=2.4e-05 Score=67.96 Aligned_cols=193 Identities=12% Similarity=0.062 Sum_probs=114.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 344 (509)
...|.-.|...|+...|..-+++. +.+..+|..+...|-+.|..+.|.+.|++..... +-+..+.|..-.-+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 445566666777777776666664 3345666666667777777777777776666543 33445556666666666
Q ss_pred CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047221 345 GQDADACELLEEMLGRNCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKY 423 (509)
Q Consensus 345 g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 423 (509)
|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+.-.+.....+.|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 67777777776666541111 12355555555566677777777776666552 11234455566666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 424 VVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 424 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
++.....+. ++....-..|..--..|+.+.+-++=..+..
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666655554 5555555555555566666666555444443
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.68 E-value=3.4e-05 Score=67.03 Aligned_cols=200 Identities=13% Similarity=0.038 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047221 298 YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377 (509)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 377 (509)
+..-|.-+|.+.|+...|.+-+++..+.. +-+..+|..+...|.+.|+.+.|.+-|+...+.. +-+..+.|..-.-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34456677888888888888888887764 4456677788888888888888888888777652 224556666677777
Q ss_pred HcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 047221 378 RVGKFDVAFNFFNQMVKRGLQP-RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAK 456 (509)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 456 (509)
..|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|.+.|++-.+....-+ .+.-.+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~-~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP-PALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC-hHHHHHHHHHHhcccchHHH
Confidence 8888888888888877652222 245677777777788888888888887776543222 23445667777888888888
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 457 NVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 457 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
.+++.....+. ++.......|+.-...|+.+.+.+.=..+.+.-
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88887776644 777777777777777888887777766666543
No 77
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=9.7e-05 Score=69.43 Aligned_cols=266 Identities=11% Similarity=-0.037 Sum_probs=170.9
Q ss_pred CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHH
Q 047221 229 NEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLV-SGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILI 303 (509)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li 303 (509)
+......+-. +....|+.++++..|+.....+ |+. .........+.+.|+.+....+...+ ......|-.-.
T Consensus 231 NvhLl~~lak-~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGK-CLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhh-hhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 4444455555 4344445777777777766432 222 12222333345566666665555443 23444455555
Q ss_pred HHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 047221 304 KEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFD 383 (509)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 383 (509)
.......+++.|+.+-++..+.. +.+...|-.-..++...|+.++|.--|+..+.. -+-+...|.-|+.+|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHH
Confidence 55556677777777777766543 334444444445667778888888888776654 2346778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHH
Q 047221 384 VAFNFFNQMVKRGLQPRLATHAAFI-KGYF-IFYRYEDAYKYVVLSADKYKSSS-NMLYSLLASLHDKNNNPVMAKNVLS 460 (509)
Q Consensus 384 ~a~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 460 (509)
+|..+-++..+. +.-+..+.+.+- ..+. ....-|+|.++++.-... .|+ ....+.+...|...|+.++++.+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 887776655443 233444444331 2221 222346777777654433 343 3356778888899999999999999
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047221 461 EMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGS 504 (509)
Q Consensus 461 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 504 (509)
+... ..||....+.|.+.+...+.+.+|++.|....+.+++.
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 9876 67999999999999999999999999998887776654
No 78
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.66 E-value=1.9e-06 Score=80.76 Aligned_cols=223 Identities=13% Similarity=0.081 Sum_probs=143.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGS-CLVSGVRALIEM 275 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~ 275 (509)
....+.+++...|+++.++ .+..... .|.......+.. ++......+.+..-+++....... .+....-....+
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~-y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAE-YLSSPSDKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHH-HHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHH-HHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 4556667777777766543 3443333 566666555554 444434455555544443333323 233333344456
Q ss_pred HHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCChHHHH
Q 047221 276 FSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK----NGQDADAC 351 (509)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~ 351 (509)
|...|++++|.+++.+. .+.......+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+++|.
T Consensus 112 ~~~~~~~~~AL~~l~~~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred HHHcCCHHHHHHHHHcc-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHH
Confidence 77788999888888766 56777778888899999999999999998864 233 344444444433 34688999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhC
Q 047221 352 ELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRY-EDAYKYVVLSADK 430 (509)
Q Consensus 352 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 430 (509)
.+|+++.+. ..++..+.|.+..++...|++++|.+++.+....+ +-+..+...+|.+....|+. +.+.+.+.++...
T Consensus 188 y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 188 YIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999998665 56788888888888899999999999988876543 22556666778777777877 6777888887764
No 79
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=1.2e-05 Score=72.25 Aligned_cols=291 Identities=14% Similarity=0.072 Sum_probs=186.8
Q ss_pred HHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHH
Q 047221 162 SVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVL 239 (509)
Q Consensus 162 ~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~ 239 (509)
-+.+++..+.+..+ +|+++...-....| ++....+.|..+|-+..++..|-+.++++.. ..|...-|...-.-
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p---~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSP---RSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQ 86 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHH
Confidence 45566666665554 67777666644445 2333778888888888999999999998854 35666666655544
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCccHH
Q 047221 240 ISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEM--FSVLGLYEMAKYVIKKTE--RKVSYYNILIKEMCRRCDFKGP 315 (509)
Q Consensus 240 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~--~~~~~~~~li~~~~~~g~~~~A 315 (509)
.+-+.+.+.+|.++...|... ++...-..-+.+ ....+++..+..+.++.+ .+..+.+.......+.|++++|
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHH
Confidence 455677788899888887642 222111112222 224578888888888885 4556666666667788999999
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-------------CCH--------HHHHHHHH
Q 047221 316 RDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCH-------------PDA--------ITYEIFIV 374 (509)
Q Consensus 316 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-------------p~~--------~~~~~li~ 374 (509)
.+-|+...+-|---....|+..+. ..+.|+.+.|++...++.++|++ ||+ -.-+.++.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 999988776543444567776664 45678889999999998887652 221 12223333
Q ss_pred -------HHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047221 375 -------YSCRVGKFDVAFNFFNQMVKR-GLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLH 446 (509)
Q Consensus 375 -------~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 446 (509)
.+.+.|+.+.|.+.+-.|.-+ ....|.+|...+.-+=. .+++.+..+-+.-+.+... -...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 345678888888888877533 33456666554433322 2334444444444444433 3456788888889
Q ss_pred HhCCChHHHHHHHHHHH
Q 047221 447 DKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 447 ~~~g~~~~a~~~~~~m~ 463 (509)
|++.-++-|-.++.+-.
T Consensus 321 CKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENA 337 (459)
T ss_pred hhhHHHhHHHHHHhhCc
Confidence 99988888888876543
No 80
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.61 E-value=0.00025 Score=70.35 Aligned_cols=296 Identities=12% Similarity=0.068 Sum_probs=178.7
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhh-CCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNV-YQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEM 275 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 275 (509)
.|-.-+..+.+.|++..-+..|+..+. ..+.-....|...+. +....+..+-+.+++++-.+.. ...-+.-|..
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~-Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLK-FVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHH-HHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 555555555666666666666665432 233334455555555 4444444556666666655422 2224455555
Q ss_pred HHhcCCHHHHHHHHHHcC-----------------------------------------------CC--HHHHHHHHHHH
Q 047221 276 FSVLGLYEMAKYVIKKTE-----------------------------------------------RK--VSYYNILIKEM 306 (509)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~-----------------------------------------------~~--~~~~~~li~~~ 306 (509)
+++.+++++|.+.+..+- +| ...|++|...|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 666666666655554430 12 34589999999
Q ss_pred HhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc----------------CC------hHHHHHHHHHHHhCC---
Q 047221 307 CRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN----------------GQ------DADACELLEEMLGRN--- 361 (509)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~----------------g~------~~~a~~~~~~m~~~g--- 361 (509)
.+.|.+++|.++|++..+. ..+..-|+.+.++|+.- |+ ++-...-|+.+...+
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~ 336 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL 336 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence 9999999999999887765 33444455555555431 11 222233333333321
Q ss_pred --------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047221 362 --------CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR------LATHAAFIKGYFIFYRYEDAYKYVVLS 427 (509)
Q Consensus 362 --------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (509)
-+-++..|..-+.. ..|+..+-..+|.+.++. +.|- ...|..+.+.|...|+++.|..+|++.
T Consensus 337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 11234444443333 346677778888887765 3332 245888999999999999999999887
Q ss_pred HhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----------CCCc-------CHHHHHHHHHHHHhcCCH
Q 047221 428 ADKYKSSS---NMLYSLLASLHDKNNNPVMAKNVLSEMMKN----------GLRP-------NVSVYRRVLKHLHTSHQE 487 (509)
Q Consensus 428 ~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------g~~p-------~~~t~~~ll~~~~~~g~~ 487 (509)
.+-..+-- ..+|-.-...=.++.+++.|++++++.... |-.| +...|...++.--..|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 66533322 345555556666788899999988876531 1111 334566666666677889
Q ss_pred HHHHHHHHHHHhCCC
Q 047221 488 HMAKCLSSRYSSLSL 502 (509)
Q Consensus 488 ~~a~~~~~~m~~~~~ 502 (509)
+....+++++.+..+
T Consensus 494 estk~vYdriidLri 508 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987755
No 81
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=0.00066 Score=65.13 Aligned_cols=317 Identities=10% Similarity=0.064 Sum_probs=179.8
Q ss_pred hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHH
Q 047221 176 SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVE 255 (509)
Q Consensus 176 ~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 255 (509)
.|..+|+...... .++...|---+..=.+++++..|..+++.....-...|..-|..+.- -..-|++..|.++|+
T Consensus 91 RARSv~ERALdvd---~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ym--EE~LgNi~gaRqife 165 (677)
T KOG1915|consen 91 RARSVFERALDVD---YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYM--EEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHhcc---cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHH--HHHhcccHHHHHHHH
Confidence 4778888772222 13444677777777777888888888877654432333333332221 122344777888887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHc-CC-CCC
Q 047221 256 VLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV-GC-EPI 330 (509)
Q Consensus 256 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~-~p~ 330 (509)
.-.+ ..|+...|.+.|+.=.+...++.|..++++. .|++.+|-....-=-++|.+..|..+|....+. |- ..+
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 7664 5677888888888888888888888888774 577777777777777777777777777655532 10 011
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhC------------------------C-------------------CCCCHH
Q 047221 331 TLTYNYVLGVLCKNGQDADACELLEEMLGR------------------------N-------------------CHPDAI 367 (509)
Q Consensus 331 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------------------------g-------------------~~p~~~ 367 (509)
...|.+...-=.++..++.|.-+|+-..+. | -+-|-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 122222222212233333333333322221 0 123445
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHH---H-----HHcCCHHHHHHHHHHHHhCCCCCCHH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRL--ATHAAFIKG---Y-----FIFYRYEDAYKYVVLSADKYKSSSNM 437 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~---~-----~~~g~~~~A~~~~~~m~~~~~~p~~~ 437 (509)
+|--.+..-...|+.+...++|+..+.. ++|-. ..|.--|-. | ....+++.+.++|+...+. ++....
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkF 401 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKF 401 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccc
Confidence 5656666666678888888888887764 45521 112111111 1 2345666677777665541 111222
Q ss_pred HHH----HHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 438 LYS----LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 438 ~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
||. ....--.++.++..|.+++...+ |..|...+|...|..=.+.+.+|....++++..+.++.
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 222 22233335566666666666554 56666677777666666777777777777777666554
No 82
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=0.00018 Score=79.99 Aligned_cols=303 Identities=12% Similarity=-0.006 Sum_probs=187.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhCCC------ccCH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH----HH
Q 047221 200 LVIDNCGRLDDYETMRQLLNDFNVYQV------CLNE-KAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLV----SG 268 (509)
Q Consensus 200 ~li~~~~~~g~~~~A~~l~~~m~~~~~------~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~ 268 (509)
.....+...|++++|..+++.....-- .+.. .....+........|++++|...++...+.-...+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 334445567888888888877643210 1111 111222222334566689999888887653212221 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcC--------CC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHc----CCC--C-Ch
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKTE--------RK--VSYYNILIKEMCRRCDFKGPRDLLVEMRQV----GCE--P-IT 331 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~--------~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--p-~~ 331 (509)
.+.+...+...|++++|...+++.. +. ..+++.+...+...|++++|...+++.... |.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 4666777788899999988887751 11 234556667788899999999988876542 211 1 22
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHH--H
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGR--NCHP--DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG--LQPRLA--T 403 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~--~ 403 (509)
..+..+...+...|++++|...+.+.... ...+ ....+..+...+...|+.++|.+.+++..... ...... .
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 33445556677789999998888876543 1112 23344445567778899999998888775421 111110 0
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCcC-HHH
Q 047221 404 --HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN---MLYSLLASLHDKNNNPVMAKNVLSEMMKN----GLRPN-VSV 473 (509)
Q Consensus 404 --~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t 473 (509)
....+..+...|+.+.|.+++............ ..+..+..++...|+.++|..++++.... |..++ ..+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 111234455678999999888765543211111 12345677788999999999999987653 33332 235
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 474 YRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 474 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
...+..++.+.|+.++|...+.+..+..-
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 66666788899999999999988876543
No 83
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.54 E-value=3.9e-05 Score=82.02 Aligned_cols=227 Identities=12% Similarity=0.118 Sum_probs=176.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC---------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHH
Q 047221 263 SCLVSGVRALIEMFSVLGLYEMAKYVIKKTE---------RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLT 333 (509)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 333 (509)
+-....|-..|.-....++++.|++++++.- ...-.|.++++.-...|.-+...++|++..+-- ---..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 4445667888888889999999999998851 124578888887777788888999999988742 22456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHH
Q 047221 334 YNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP---RLATHAAFIKG 410 (509)
Q Consensus 334 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~ 410 (509)
|..|...|.+.+..++|.++++.|.+. ..-....|...+..+.+.++-+.|..++.+..+. -| .+....-.+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 788999999999999999999999887 3356778999999999999999999999988765 22 24445556666
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCCHH
Q 047221 411 YFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV--SVYRRVLKHLHTSHQEH 488 (509)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~ 488 (509)
-.++|+.+.+..+|+.......+ -...|+.+|..-.++|+.+.+..+|++....++.|-. ..|...+..=-+.|+-+
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 67899999999999988876533 3446999999999999999999999999998887754 35666666555667665
Q ss_pred HHHHHHH
Q 047221 489 MAKCLSS 495 (509)
Q Consensus 489 ~a~~~~~ 495 (509)
.++.+=.
T Consensus 1689 ~vE~VKa 1695 (1710)
T KOG1070|consen 1689 NVEYVKA 1695 (1710)
T ss_pred hHHHHHH
Confidence 5554433
No 84
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=2.7e-05 Score=78.20 Aligned_cols=224 Identities=13% Similarity=0.034 Sum_probs=167.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 047221 262 GSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVL 341 (509)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 341 (509)
.+|--..-..+...+...|-...|..+|+++ ..|.-+|.+|+..|+..+|..+..+..+. +||..-|..+.+..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 3343334457888899999999999999876 57888999999999999999999888873 89999999998888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047221 342 CKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 421 (509)
....-+++|.++++....+ .-..+-......++++++.+.|+.-.+.. ..-..+|-.+-.+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777788898888865443 11111111233678888888887655542 234567777777888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 422 KYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
+.|..-.... .-+...||.+-.+|.+.|+..+|...+++..+.+ .-+...|...+-...+.|.+++|++.+.+|.+..
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 8887765532 2245678888888888888888888888888876 3344556666666778888888888888877543
No 85
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.52 E-value=0.00092 Score=66.52 Aligned_cols=138 Identities=15% Similarity=0.075 Sum_probs=93.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhC
Q 047221 147 TESKLLSMSVSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVY 224 (509)
Q Consensus 147 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 224 (509)
+.+.|..+.+.-....|.-.|....+.+- .++.+++.-..+.|. .-+--|..++..+++++|-+.+......
T Consensus 125 fdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~------~~eeyie~L~~~d~~~eaa~~la~vln~ 198 (835)
T KOG2047|consen 125 FDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPE------AREEYIEYLAKSDRLDEAAQRLATVLNQ 198 (835)
T ss_pred HHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHH------HHHHHHHHHHhccchHHHHHHHHHhcCc
Confidence 44555555555556667777776666663 588888888777776 5677789999999999999999987654
Q ss_pred C------CccCHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHc
Q 047221 225 Q------VCLNEKAFGFLPVLISSKALT--KKGIWRVVEVLNQVGGSCLV--SGVRALIEMFSVLGLYEMAKYVIKKT 292 (509)
Q Consensus 225 ~------~~p~~~~~~~ll~~~~~~~~~--~~~a~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m 292 (509)
. .+.+...|.-+-.......+. --....+++.+... -+|. ..|++|.+-|.+.|.++.|..+|++-
T Consensus 199 d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 199 DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 2 234555666665533322221 11334445444432 3343 45899999999999999999999884
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.50 E-value=0.0018 Score=64.64 Aligned_cols=249 Identities=13% Similarity=0.113 Sum_probs=155.1
Q ss_pred CHHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHcCCCHH----HHHHHHHHHHhcCCccH
Q 047221 246 TKKGIWRVVEVLNQVG-GSCLVSGVRALI------EMFSVLGLYEMAKYVIKKTERKVS----YYNILIKEMCRRCDFKG 314 (509)
Q Consensus 246 ~~~~a~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~~~----~~~~li~~~~~~g~~~~ 314 (509)
....|..+++...+.. -.|+...+.-.. ....+.|..+.|.+.+...++.++ .--.-...+.+.+++++
T Consensus 158 ~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 158 EYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHh
Confidence 3777888877776544 345555554322 234567778888887777765432 23345567888999999
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHH-HHHHhcCChHHHH-HHHHHHHhC--------------------------------
Q 047221 315 PRDLLVEMRQVGCEPITLTYNYVL-GVLCKNGQDADAC-ELLEEMLGR-------------------------------- 360 (509)
Q Consensus 315 A~~~~~~m~~~g~~p~~~t~~~li-~~~~~~g~~~~a~-~~~~~m~~~-------------------------------- 360 (509)
|..++..+... .||..-|...+ .++++..+.-++. .+|....+.
T Consensus 238 A~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 238 AVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 99999999877 57766666544 4444343333333 666654332
Q ss_pred --CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCC----------CCCHHH--HHHHHHHHHHcCCHHHHHH
Q 047221 361 --NCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK----RGL----------QPRLAT--HAAFIKGYFIFYRYEDAYK 422 (509)
Q Consensus 361 --g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~----------~p~~~~--~~~li~~~~~~g~~~~A~~ 422 (509)
|++ .++..+...|-.....+-.+++.-.+.. .|. +|+... +--++..|-+.|+++.|..
T Consensus 316 ~Kg~p---~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVP---SVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCC---chhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 111 1222333333221111111122111211 111 444443 4457788889999999999
Q ss_pred HHHHHHhCCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 423 YVVLSADKYKSSSNM-LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 423 ~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
.++...+. .|+.+ .|-.=...+...|.+++|...+++..+.. .||...=.-......++.+.++|.++.....+.|
T Consensus 393 yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 393 YIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 99886654 55543 44455577889999999999999988763 4566555466677788999999999999998887
Q ss_pred C
Q 047221 502 L 502 (509)
Q Consensus 502 ~ 502 (509)
.
T Consensus 470 ~ 470 (700)
T KOG1156|consen 470 F 470 (700)
T ss_pred c
Confidence 5
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=0.00027 Score=65.23 Aligned_cols=296 Identities=10% Similarity=-0.043 Sum_probs=180.6
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 047221 201 VIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSV-- 278 (509)
Q Consensus 201 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-- 278 (509)
|.+..--.-.+.+|++++....... |.-...|..+..|+.+.+-.+-+.+++..-.+. ++.+....|....-..+
T Consensus 157 LAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ 233 (557)
T KOG3785|consen 157 LASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLI 233 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhh
Confidence 3333333446788888888876553 566677778888888888777777777766543 23333444433322222
Q ss_pred cCCHHHHH--HHHHHcC---------------------------C-----CHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 047221 279 LGLYEMAK--YVIKKTE---------------------------R-----KVSYYNILIKEMCRRCDFKGPRDLLVEMRQ 324 (509)
Q Consensus 279 ~g~~~~A~--~~~~~m~---------------------------~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (509)
.|+..+++ .+.+... | =..+--.|+-.|.+.+++.+|..+.+++.-
T Consensus 234 ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P 313 (557)
T KOG3785|consen 234 NGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP 313 (557)
T ss_pred ccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC
Confidence 12222211 1111110 0 022334455667888888888888776651
Q ss_pred cCCCCChHHHHHHHHHH-----HhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 047221 325 VGCEPITLTYNYVLGVL-----CKNGQDADACELLEEMLGRNCHPDAI-TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQ 398 (509)
Q Consensus 325 ~g~~p~~~t~~~li~~~-----~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 398 (509)
..|-......+..+- .....+.-|.+.|.-.-+.+..-|.. --.++.+++.-..++++++-.+..+..-=..
T Consensus 314 --ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N 391 (557)
T KOG3785|consen 314 --TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN 391 (557)
T ss_pred --CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 133333333332221 12223455777776555554443332 3445555556666788888888877765445
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHH-HHHH
Q 047221 399 PRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSV-YRRV 477 (509)
Q Consensus 399 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~l 477 (509)
.|...+| +.++++..|...+|+++|-++....++-+..-...|..+|.++++++.|++++-++.. ..+... ...+
T Consensus 392 dD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlI 467 (557)
T KOG3785|consen 392 DDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLI 467 (557)
T ss_pred cchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHH
Confidence 5666666 8889999999999999998776665554444344556788899999999888766532 223333 3444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047221 478 LKHLHTSHQEHMAKCLSSRYSSLSLGSS 505 (509)
Q Consensus 478 l~~~~~~g~~~~a~~~~~~m~~~~~~~~ 505 (509)
..-|.+++++--|-+.|..+...++.|.
T Consensus 468 An~CYk~~eFyyaaKAFd~lE~lDP~pE 495 (557)
T KOG3785|consen 468 ANDCYKANEFYYAAKAFDELEILDPTPE 495 (557)
T ss_pred HHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence 5578899999999999999998888774
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00011 Score=66.11 Aligned_cols=289 Identities=13% Similarity=0.089 Sum_probs=195.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCcc-CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVYQVCL-NEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVR-ALIE 274 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~ 274 (509)
-+.+++..+.+..+++.|++++..-.++. | +......+-. |+-...++..|-..++++.... |...-|. --..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgy-CYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGY-CYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQ 86 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHH
Confidence 46677777788899999999998776653 4 4445555555 4444444999999999987643 4444342 1234
Q ss_pred HHHhcCCHHHHHHHHHHcCCCHHHHHHHH--H--HHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHH
Q 047221 275 MFSVLGLYEMAKYVIKKTERKVSYYNILI--K--EMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350 (509)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~li--~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 350 (509)
.+.+.+.+.+|.++...|..+....+-.+ . .....+++-.+..++++....| +..+.+...-...+.|+++.|
T Consensus 87 SLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 55678899999999999865433333222 2 2334688888888888877543 334444444445689999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-------------CHH--------HHHHHHH
Q 047221 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP-------------RLA--------THAAFIK 409 (509)
Q Consensus 351 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-------------~~~--------~~~~li~ 409 (509)
.+-|....+-|---....||..+.-| +.|+.+.|++...+++++|++- |+. .-++++.
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 99999988874444566788776555 6689999999999999887532 211 1234444
Q ss_pred H-------HHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 047221 410 G-------YFIFYRYEDAYKYVVLSADK-YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481 (509)
Q Consensus 410 ~-------~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 481 (509)
+ +.+.|+.+.|.+-+-+|.-+ ....|.+|.+.+.-.= ..+++.+..+-+.-+....- -...||..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 4 46779999999998888643 3455777766554322 24556666666666665433 2457999999999
Q ss_pred HhcCCHHHHHHHHHH
Q 047221 482 HTSHQEHMAKCLSSR 496 (509)
Q Consensus 482 ~~~g~~~~a~~~~~~ 496 (509)
++..-++.|-.++-+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 999999998887754
No 89
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=2.2e-05 Score=75.19 Aligned_cols=216 Identities=10% Similarity=0.018 Sum_probs=166.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHH
Q 047221 244 ALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLL 319 (509)
Q Consensus 244 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (509)
.|+...+..-|+...+....++ ..|--+..+|....+-++..+.|+.. +.|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 3447788888888887654333 33777888899999999999999885 445666766666677778899999999
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-
Q 047221 320 VEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQ- 398 (509)
Q Consensus 320 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~- 398 (509)
++..... +-+...|--+.-+..+.++++++...|++..++ ++--...|+-....+...++++.|.+.|+..++..-.
T Consensus 418 ~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 418 QKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 9988764 445677777777778899999999999999887 5666788999999999999999999999988765211
Q ss_pred ------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 399 ------PRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 399 ------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+...+.-+++..-.+ +++..|.+++.+..+.+.+.+ ..|..|...-.+.|+.++|+++|++-..
T Consensus 496 ~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce-~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCE-QAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 112222333333333 899999999999888765444 4688899999999999999999998765
No 90
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00033 Score=64.60 Aligned_cols=326 Identities=12% Similarity=0.092 Sum_probs=173.2
Q ss_pred HHHHHHHHHh-cCCc--hHHHHHHHh-hccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCc----------
Q 047221 162 SVIEILRVLN-SEKV--SALCFLKYM-REIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVC---------- 227 (509)
Q Consensus 162 ~~~~ll~~~~-~~~~--~A~~~~~~~-~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~---------- 227 (509)
..+..|.-|. +-|+ +|+.++..+ ..-.|+.. .+-.|..++.-.|.+.+|..+-.+..+..+.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e----l~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE----LGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc----cchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Confidence 4445555544 3443 788888887 43344444 7777777777788888888777665322100
Q ss_pred -cCH---HHH-----------HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHH
Q 047221 228 -LNE---KAF-----------GFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVR-ALIEMFSVLGLYEMAKYVIKK 291 (509)
Q Consensus 228 -p~~---~~~-----------~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~ 291 (509)
-|. .+| -++.+..+.+.. +++|.+++......+ |.-...| -+.-+|.+..-++.+.++++-
T Consensus 134 lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H-YQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 134 LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH-YQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH-HHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 000 011 011111122222 555555555554322 2222222 233345555555555555433
Q ss_pred ----cCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcC--------------------------CCCC-----hHHHHH
Q 047221 292 ----TERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVG--------------------------CEPI-----TLTYNY 336 (509)
Q Consensus 292 ----m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------------~~p~-----~~t~~~ 336 (509)
.+....+-|.......+.-.-..|.+-..++...+ +-|. ...--.
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 23444444444433333211112222222211111 0010 011123
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-H----HcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHH
Q 047221 337 VLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS-C----RVGKFDVAFNFFNQMVKRGLQPRLAT-HAAFIKG 410 (509)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~----~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~ 410 (509)
|+--|.+.+++++|..+.+++.-. .|-....-.++.+- . ....+.-|.+.|+-.-+.+..-|... --++..+
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 333467778888888777665322 23222222222211 1 11235566666666555554444322 3455566
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHH-HHHHHHhcCCHHH
Q 047221 411 YFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRR-VLKHLHTSHQEHM 489 (509)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~ 489 (509)
+.-.-++++++-.++.++.--...|...|| +.++++..|.+.+|.++|-......++ |..+|.+ |.++|.+.|+.+.
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchH
Confidence 666677888888888877655555666666 889999999999999999887655454 4555654 5567789999999
Q ss_pred HHHHHHHHH
Q 047221 490 AKCLSSRYS 498 (509)
Q Consensus 490 a~~~~~~m~ 498 (509)
|++++-++.
T Consensus 447 AW~~~lk~~ 455 (557)
T KOG3785|consen 447 AWDMMLKTN 455 (557)
T ss_pred HHHHHHhcC
Confidence 998876554
No 91
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.36 E-value=7.5e-05 Score=68.47 Aligned_cols=59 Identities=14% Similarity=0.071 Sum_probs=35.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMKNG--LRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 500 (509)
+...|.+.|++++|+..+++..+.. -......+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4445666666666666666666531 1112345666666666677777777666666544
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.36 E-value=0.00012 Score=67.08 Aligned_cols=170 Identities=15% Similarity=0.093 Sum_probs=129.3
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH-
Q 047221 293 ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI----TLTYNYVLGVLCKNGQDADACELLEEMLGRNCH-PDA- 366 (509)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~- 366 (509)
+.....+..+...+.+.|++++|...|++.... .|+ ..++..+..++.+.|++++|...++++.+..-. +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 345778888999999999999999999998875 343 246778889999999999999999999876321 111
Q ss_pred HHHHHHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHHHH-----------------HHHHHHHHHcCCHHHHH
Q 047221 367 ITYEIFIVYSCRV--------GKFDVAFNFFNQMVKRGLQPRLATH-----------------AAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 367 ~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~~~-----------------~~li~~~~~~g~~~~A~ 421 (509)
.++..+-.++.+. |+.++|.+.|+++.+.... +...+ ..+...|.+.|++++|.
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 2344445555544 7899999999999876321 22222 13456788899999999
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 422 KYVVLSADKYK--SSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 422 ~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
..++...+... ......+..+..++.+.|++++|..+++.+...
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999887632 223567889999999999999999999988754
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.0023 Score=66.96 Aligned_cols=293 Identities=15% Similarity=0.128 Sum_probs=158.4
Q ss_pred CCCHHHHHHHHHHHhcCCchHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCC-Ccc-CHHHHH
Q 047221 157 SLSNASVIEILRVLNSEKVSALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQ-VCL-NEKAFG 234 (509)
Q Consensus 157 ~~~~~~~~~ll~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p-~~~~~~ 234 (509)
+.|...|..+|.. ....-+++.+++....-....|++.-+..+.++...+-..+..+++++..-.. ... +...-|
T Consensus 949 R~D~~LW~~VL~e---~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQn 1025 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNE---ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQN 1025 (1666)
T ss_pred ccChHHHHHHHhc---cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhh
Confidence 4455566665532 11234556666622112223467788888999999999999999999875432 111 222233
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccH
Q 047221 235 FLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKG 314 (509)
Q Consensus 235 ~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~ 314 (509)
.++- .+-+.+ ...+.+..+++..... | .+.......+-+++|..+|++..-+..+.+.||.- -+.++.
T Consensus 1026 LLiL-tAikad-~trVm~YI~rLdnyDa-~------~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~---i~~ldR 1093 (1666)
T KOG0985|consen 1026 LLIL-TAIKAD-RTRVMEYINRLDNYDA-P------DIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN---IGSLDR 1093 (1666)
T ss_pred hHHH-HHhhcC-hHHHHHHHHHhccCCc-h------hHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH---hhhHHH
Confidence 3333 444454 6667777776655432 2 23445556677888888888876665555555543 233444
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047221 315 PRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK 394 (509)
Q Consensus 315 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 394 (509)
|.+.-++.. ....|..+..+-.+.|.+.+|.+-|-+ .. |...|.-+|....+.|.+++-.+.+.-..+
T Consensus 1094 A~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyik--ad----Dps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1094 AYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIK--AD----DPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred HHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHh--cC----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 444443333 123455555555555555555544321 11 445555555555555655555555554444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--------------------------HHHHHHHHHHh
Q 047221 395 RGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM--------------------------LYSLLASLHDK 448 (509)
Q Consensus 395 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------------------------~~~~li~~~~~ 448 (509)
...+|.+. +.||-+|++.+++.+.+++. .-||.. -|..|...+..
T Consensus 1162 k~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~ 1232 (1666)
T KOG0985|consen 1162 KVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVY 1232 (1666)
T ss_pred hhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 44444332 34555555555555444433 123333 34445555555
Q ss_pred CCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 047221 449 NNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAK 491 (509)
Q Consensus 449 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 491 (509)
.|.+..|...-++. -+..||.-+-.+|...+.+..|.
T Consensus 1233 LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1233 LGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred HHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH
Confidence 55555555444433 24557777777777777666553
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.31 E-value=0.00046 Score=74.25 Aligned_cols=223 Identities=11% Similarity=0.026 Sum_probs=164.4
Q ss_pred CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHcC---CCHHHHHH
Q 047221 229 NEKAFGFLPVLISSKALTKKGIWRVVEVLNQV-GGSC---LVSGVRALIEMFSVLGLYEMAKYVIKKTE---RKVSYYNI 301 (509)
Q Consensus 229 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~ 301 (509)
....|-..|...+.. +..++|.++.++.+.. ++.- -...|.+++++-...|.-+...++|++.. .-...|..
T Consensus 1457 SSi~WI~YMaf~Lel-sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~ 1535 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLEL-SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLK 1535 (1710)
T ss_pred cchHHHHHHHHHhhh-hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHH
Confidence 344566666634433 4488888888877642 2211 12356777777777788888999999873 23456888
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHH
Q 047221 302 LIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD---AITYEIFIVYSCR 378 (509)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~ 378 (509)
|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.+..+. -|- +....-.+..-.+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhh
Confidence 999999999999999999999975 2356778999999999999999999999988875 233 3344445556678
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhCCChHHHH
Q 047221 379 VGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM--LYSLLASLHDKNNNPVMAK 456 (509)
Q Consensus 379 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~ 456 (509)
.|+.+.+..+|+..... .+--...|+..|++-.++|+.+.++.+|++....++.|-.. .|...+..=-++|+-+.+.
T Consensus 1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 89999999999998876 23346689999999999999999999999999988776543 4554454444455544333
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.31 E-value=0.00024 Score=71.33 Aligned_cols=188 Identities=16% Similarity=0.120 Sum_probs=104.1
Q ss_pred HHHhcCCHHHHHHHHHHcC-CC--HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHH
Q 047221 275 MFSVLGLYEMAKYVIKKTE-RK--VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADAC 351 (509)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 351 (509)
+.....+|..|..+++.+. .+ ..-|..+...|+..|+++.|.++|.+.- -++-.|.+|.+.|++++|.
T Consensus 741 aai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHH
Confidence 3444556666666666552 22 2335566677777777777777775422 2445566777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 352 ELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 352 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
++-.+.. |-......|-+-..-+-+.|++.+|+++|-.+. .|+ ..|.+|-+.|..++.+++.++-....
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh
Confidence 7655443 223344455555555666677777776664431 233 24666777777777666665432111
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047221 432 KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLS 494 (509)
Q Consensus 432 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 494 (509)
-..|-..+..-|...|+...|.+-|-+.. -|.+-++.|...+.|++|.++-
T Consensus 881 ---l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 881 ---LHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred ---hhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 11233445555566666666666554432 2444444555555555555443
No 96
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=8.3e-07 Score=54.06 Aligned_cols=33 Identities=33% Similarity=0.554 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC
Q 047221 298 YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI 330 (509)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 330 (509)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 97
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.30 E-value=0.0048 Score=60.46 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 047221 367 ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP-RLATHAAFIKGYFIFYRYEDAYKYVVLSADK-YKSSSNMLYSLLAS 444 (509)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~ 444 (509)
-+|...|+.-.+..-++.|..+|.+..+.+..+ ++.+++++|.-||. ++.+.|.++|+-=... |- +..--...+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHH
Confidence 356677777778888999999999999988877 78889999998875 7789999999753332 32 2333455677
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 445 LHDKNNNPVMAKNVLSEMMKNGLRPNV--SVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 445 ~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
-+...++-..|..+|++....++.||. ..|..+|.-=..-|+...+.++-+++..
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 777888888999999999888766655 5899999888889999999998887764
No 98
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.0012 Score=58.84 Aligned_cols=172 Identities=12% Similarity=0.112 Sum_probs=93.5
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChH
Q 047221 253 VVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITL 332 (509)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 332 (509)
+.+.+.......+......-...|...|++++|.+.... ..+......=+..+.+..+++-|.+.+++|.+- -+..
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~-~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL-GENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 344444444444434344444556667777777776666 334444444445556666667777777777642 2344
Q ss_pred HHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047221 333 TYNYVLGVLCK----NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFI 408 (509)
Q Consensus 333 t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 408 (509)
|.+-|..++.+ .+.+.+|.-+|++|-+. ..|+.-+.+-...++...|++++|+.++++...+... +..+...+|
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nli 248 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHH
Confidence 55544444433 34566677777776654 4566666666666666667777777777766655332 333433333
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhC
Q 047221 409 KGYFIFYR-YEDAYKYVVLSADK 430 (509)
Q Consensus 409 ~~~~~~g~-~~~A~~~~~~m~~~ 430 (509)
-+-...|. .+...+.+.+++..
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhc
Confidence 33333333 33344555555443
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.28 E-value=0.0029 Score=70.43 Aligned_cols=295 Identities=11% Similarity=-0.002 Sum_probs=179.7
Q ss_pred HhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHH
Q 047221 205 CGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGG------SCL--VSGVRALIEMF 276 (509)
Q Consensus 205 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~------~~~--~~~~~~li~~~ 276 (509)
....|+++.+...++.+.......+......... .....++.+++...+......-- .+. ......+...+
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~-~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAW-LAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHH-HHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 4445667766666665522111111111111122 22345669999988887754311 111 12223344556
Q ss_pred HhcCCHHHHHHHHHHc----CC-C----HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCC---CC--ChHHHHHHHHHHH
Q 047221 277 SVLGLYEMAKYVIKKT----ER-K----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC---EP--ITLTYNYVLGVLC 342 (509)
Q Consensus 277 ~~~g~~~~A~~~~~~m----~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~li~~~~ 342 (509)
...|++++|...+++. +. + ....+.+...+...|++++|...+.+.....- .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7899999999998874 21 2 23456677778889999999999988764311 11 1234556667788
Q ss_pred hcCChHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHH
Q 047221 343 KNGQDADACELLEEMLGR----NCH--P-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKR--GLQP--RLATHAAFIKGY 411 (509)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~~~~~~li~~~ 411 (509)
..|++++|...+++..+. |.. + ....+..+...+...|++++|...+++.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998876542 221 1 2234445556677789999999999887543 1112 234455566778
Q ss_pred HHcCCHHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhCCChHHHHHHHHHHHHCCCCcCH---HHHHHHHHHHH
Q 047221 412 FIFYRYEDAYKYVVLSADKYKS-SSNMLY-----SLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV---SVYRRVLKHLH 482 (509)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~ll~~~~ 482 (509)
...|+.+.|.+.++........ .....+ ...+..+...|+.+.|.+++............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999998887542111 011111 11224455689999999998776542211111 12345667788
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 047221 483 TSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 483 ~~g~~~~a~~~~~~m~~~ 500 (509)
..|++++|...+++....
T Consensus 703 ~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 703 LLGQFDEAEIILEELNEN 720 (903)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999887643
No 100
>PLN02789 farnesyltranstransferase
Probab=98.28 E-value=0.0013 Score=62.68 Aligned_cols=118 Identities=7% Similarity=-0.097 Sum_probs=52.9
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCc--c
Q 047221 241 SSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLG-LYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDF--K 313 (509)
Q Consensus 241 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~--~ 313 (509)
+...+..++|+.+..++.+.. +-+..+|+..-.++.+.| +++++...++++ +.+..+|+.....+.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 334444555555555555432 222233443334444444 345555555443 23344444433333333331 3
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047221 314 GPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR 360 (509)
Q Consensus 314 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 360 (509)
+++++++++.+.. .-|..+|+....++.+.|+++++++.++++.+.
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4444444444433 334444554444445555555555555555444
No 101
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=0.0029 Score=56.49 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=39.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 047221 376 SCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFI----FYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNN 451 (509)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 451 (509)
+.+..+.+-|.+.+++|.+-. +..|.+.|..+|.+ .+.+.+|..+|++|.++ ..|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 334444555555555554432 33344444444433 13344455555554332 23444444444445555555
Q ss_pred hHHHHHHHHHHHHC
Q 047221 452 PVMAKNVLSEMMKN 465 (509)
Q Consensus 452 ~~~a~~~~~~m~~~ 465 (509)
+++|..++++..+.
T Consensus 223 ~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 223 YEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555554443
No 102
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.24 E-value=0.00038 Score=70.04 Aligned_cols=168 Identities=14% Similarity=0.102 Sum_probs=118.8
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKF 382 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 382 (509)
|.+-.....|.+|+.+++.+..+. .-..-|..+...|+..|+++.|.++|-+.- .++-.|.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 345556678888888888887653 334457778888999999999999987532 355678899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 047221 383 DVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 383 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 462 (509)
++|.++-.+.. |.......|-+-..-.-++|++.+|+++|-.+. .|+. -|..|-+.|..++.+++.++-
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 99988876653 444456667777777788899999998884432 3444 467788999999999888765
Q ss_pred HHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047221 463 MKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSS 495 (509)
Q Consensus 463 ~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 495 (509)
.-..+ ..|...+..-|-..|+...|++-|-
T Consensus 877 h~d~l---~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 877 HGDHL---HDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred Chhhh---hHHHHHHHHHHHhccChhHHHHHHH
Confidence 43222 2345555556666677777766553
No 103
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=5.4e-05 Score=74.14 Aligned_cols=220 Identities=9% Similarity=-0.018 Sum_probs=162.9
Q ss_pred HHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHH
Q 047221 274 EMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDAD 349 (509)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 349 (509)
.-+.+.|++.+|.-.|+.. +.+...|..|...-..+++-..|+..+++..+.. +-|....-.|.-.|...|.-..
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 3456788899999999875 4568899999999999999999999999988764 4456777778888999999999
Q ss_pred HHHHHHHHHhCCCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047221 350 ACELLEEMLGRNCH--------PDAITYEIFIVYSCRVGKFDVAFNFFNQMVK-RGLQPRLATHAAFIKGYFIFYRYEDA 420 (509)
Q Consensus 350 a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~A 420 (509)
|++.++.-.....+ ++...-+. +.........+..++|-++.. .+.++|..++..|--.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99998877553110 00000000 122223345556666666554 35457777888888888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 421 YKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVS-VYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 421 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
...|+...... +-|..+||-|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|.+.|=....
T Consensus 450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999877653 23567899999999999999999999999987 667653 455566688999999999887765543
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.21 E-value=0.0011 Score=69.73 Aligned_cols=130 Identities=12% Similarity=0.024 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047221 331 TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD-AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIK 409 (509)
Q Consensus 331 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 409 (509)
...+-.|.....+.|.+++|..+++...+. .|| ......+...+.+.+++++|...+++..... +-+......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 444445555555555555555555555443 232 3334444445555555555555555554432 123344444444
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 410 GYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
++.+.|+.++|..+|++....+ .-+..++..+..++-..|+.++|...|++..+
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555554421 12234444455555555555555555555544
No 105
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.0068 Score=63.60 Aligned_cols=138 Identities=14% Similarity=0.095 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 047221 266 VSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG 345 (509)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 345 (509)
..+|..+..+-...|.+.+|.+-|-+. .|...|--+|....+.|.|++-.+.+...++..-+|... +.||-+|++.+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika-dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~ 1180 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTN 1180 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc-CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhc
Confidence 345666666666666666666555433 344556666666666666666666666665555455443 35566666666
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047221 346 QDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYK 422 (509)
Q Consensus 346 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 422 (509)
++.+.++.+. .||......+-+-|...|.++.|.-+|.. +.-|..|...+...|+++.|..
T Consensus 1181 rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1181 RLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred hHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHH
Confidence 6554433321 24444444444444444544444444432 2234444444555555544443
No 106
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.19 E-value=2.8e-06 Score=51.67 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcC
Q 047221 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN 470 (509)
Q Consensus 438 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 470 (509)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.18 E-value=0.0004 Score=73.77 Aligned_cols=232 Identities=6% Similarity=-0.048 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 047221 230 EKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRR 309 (509)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~ 309 (509)
...+..|+..+. ..+++++|.++.+...+.. +-....|-.+...|...++.+++..+ .++......
T Consensus 31 ~~a~~~Li~~~~-~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv------------~~l~~~~~~ 96 (906)
T PRK14720 31 FKELDDLIDAYK-SENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL------------NLIDSFSQN 96 (906)
T ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh------------hhhhhcccc
Confidence 344555555332 3344666666666444432 11222233333355555555444433 233333333
Q ss_pred CCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 047221 310 CDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFF 389 (509)
Q Consensus 310 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 389 (509)
.++.-+..+...|... .-+...+-.+..+|-+.|+.++|..+++++.+.. +-|..+.|.+.-.|+.. ++++|++++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 3443333333444432 2233466777778888888888888888888875 44677778887778777 888888887
Q ss_pred HHHHHCCCCCCHHHHHHHHHHH---H--HcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047221 390 NQMVKRGLQPRLATHAAFIKGY---F--IFYRYEDAYKYVVLSADK-YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 390 ~~m~~~g~~p~~~~~~~li~~~---~--~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 463 (509)
.+.+..-+ +..-|+.+...+ + ...+++.-.++.+.+... |..--..++-.+-..|-...++++++++++...
T Consensus 173 ~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL 250 (906)
T PRK14720 173 KKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKIL 250 (906)
T ss_pred HHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 77665410 111112111111 1 112233333333333332 333344556666677778888888888888888
Q ss_pred HCCCCcCHHHHHHHHHHHH
Q 047221 464 KNGLRPNVSVYRRVLKHLH 482 (509)
Q Consensus 464 ~~g~~p~~~t~~~ll~~~~ 482 (509)
+.. .-|.....-++..|.
T Consensus 251 ~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 251 EHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hcC-CcchhhHHHHHHHHH
Confidence 753 225556666666665
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=0.00099 Score=70.03 Aligned_cols=143 Identities=8% Similarity=-0.078 Sum_probs=110.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHH
Q 047221 262 GSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYV 337 (509)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 337 (509)
.+.+...+-.|.......|.+++|+.+++.. +.+...+..+...+.+.+++++|+..+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 3455778888888888999999999988885 4457778888888999999999999999888763 3344555677
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047221 338 LGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAF 407 (509)
Q Consensus 338 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 407 (509)
..++.+.|++++|..+|++.... .+-+..++..+-.++-+.|+.++|...|++..+.. .+....|+..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 77788889999999999998874 23347788888888888899999999999887652 3344454433
No 109
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.16 E-value=0.00025 Score=63.03 Aligned_cols=120 Identities=10% Similarity=-0.025 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047221 301 ILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG 380 (509)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 380 (509)
..+....+.|++.+|+..|++..... ++|..+|+.+--+|.+.|+.+.|..-|.+..+.- .-+...+|.|.-.|.-.|
T Consensus 105 ~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 105 AQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRG 182 (257)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcC
Confidence 34444444444444444444443322 3344444444444444444444444444433321 112223333333333344
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047221 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKY 423 (509)
Q Consensus 381 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 423 (509)
+.+.|..++......+.. |..+-..|.-.....|++++|..+
T Consensus 183 d~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 183 DLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred CHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 444444444443333211 223333333344444444444443
No 110
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.16 E-value=3.2e-06 Score=51.04 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhhCCCcc
Q 047221 196 DICSLVIDNCGRLDDYETMRQLLNDFNVYQVCL 228 (509)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p 228 (509)
++||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 489999999999999999999999999999987
No 111
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.15 E-value=0.012 Score=59.03 Aligned_cols=361 Identities=11% Similarity=0.037 Sum_probs=211.4
Q ss_pred hHhHHHHHHHHhc-----CCchHHHHHHhCCCCCCHHHHHHHHHHHhcCCchHHHHHHHhhccCCCCccChhHHHHHHHH
Q 047221 130 PKQVSEIIELLRS-----GDSETESKLLSMSVSLSNASVIEILRVLNSEKVSALCFLKYMREIMPEFYKNSDICSLVIDN 204 (509)
Q Consensus 130 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~li~~ 204 (509)
...+..++..++. +-..+...|.+.+-+++.-..--+.-.+....++|......-....+ ++.+.|..+.-.
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~---~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL---KSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc---ccchhHHHHHHH
Confidence 3456667776663 22334445555555555444433333333333466666655533222 355588888877
Q ss_pred HhccCCHHHHHHHHHHhhhCCCccCHH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 047221 205 CGRLDDYETMRQLLNDFNVYQVCLNEK-AFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYE 283 (509)
Q Consensus 205 ~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (509)
+...+++++|++.|...... .||.. .+.-+-- .-.+.++++........+.+.. +.....|..+..++.-.|+..
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlsl-LQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSL-LQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHH
Confidence 88888899999999988654 35543 3322222 2233444665555555555432 334456778888888889999
Q ss_pred HHHHHHHHc------CCCHHHHHHHHHH------HHhcCCccHHHHHHHHHHHcCCCCChHHH-HHHHHHHHhcCChHHH
Q 047221 284 MAKYVIKKT------ERKVSYYNILIKE------MCRRCDFKGPRDLLVEMRQVGCEPITLTY-NYVLGVLCKNGQDADA 350 (509)
Q Consensus 284 ~A~~~~~~m------~~~~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~~~a 350 (509)
.|..++++. .++...|.-.... ..+.|..++|++.+..-... ..|...+ .+-...+.+.+++++|
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 999888775 2555555444443 23456777777776655543 3344444 3455667889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCChHHHH-HHHHHHHHC---CCCC-----C--------------------
Q 047221 351 CELLEEMLGRNCHPDAITYEIFI-VYSCRVGKFDVAF-NFFNQMVKR---GLQP-----R-------------------- 400 (509)
Q Consensus 351 ~~~~~~m~~~g~~p~~~~~~~li-~~~~~~g~~~~a~-~~~~~m~~~---g~~p-----~-------------------- 400 (509)
..++..+... .||..-|.-.+ .++.+-.+.-++. .+|....+. .-.| +
T Consensus 239 ~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 239 VKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 9999999887 57766655554 4554454555555 666655432 1011 0
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHH----HHHHHhCCC----------CCCHH--HHHHHHHHHHhCCChHHHHHHHHH
Q 047221 401 ---LATHAAFIKGYFIFYRYEDAYKY----VVLSADKYK----------SSSNM--LYSLLASLHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 401 ---~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~----------~p~~~--~~~~li~~~~~~g~~~~a~~~~~~ 461 (509)
..++..+...|-.-...+-..++ ...+...|. .|... |+-.++..|-+.|+++.|..+++.
T Consensus 317 Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 317 KGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred cCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00122222222211111111111 111111111 33333 455678888999999999999999
Q ss_pred HHHCCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 462 MMKNGLRPNVS-VYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 462 m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
.++ -.|+.+ .|..=.+.+.+.|+.++|...+++..+.+..
T Consensus 397 AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 397 AID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred Hhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 886 456543 4555557889999999999999998877643
No 112
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.14 E-value=8.3e-05 Score=74.78 Aligned_cols=212 Identities=12% Similarity=-0.010 Sum_probs=141.8
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 047221 199 SLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSV 278 (509)
Q Consensus 199 ~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (509)
-.+...+...|-...|..+|++.. .|.-++.+|+ ..|+..+|..+..+..+ -+||...|..+.+....
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~-~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYL-LLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHH-HhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 445566777788888888887652 4555555333 34457777777777666 46777778888887777
Q ss_pred cCCHHHHHHHHHHcCCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047221 279 LGLYEMAKYVIKKTERK-VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEM 357 (509)
Q Consensus 279 ~g~~~~A~~~~~~m~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 357 (509)
...++.|.++++..... ...|+ ....+.++++++.+.|+.-.+.. ..-..+|-.+-.++.+.++++.|.+.|..-
T Consensus 470 ~s~yEkawElsn~~sarA~r~~~---~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISARAQRSLA---LLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hHHHHHHHHHhhhhhHHHHHhhc---cccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 77778887777664211 11111 11223677778888777655443 345567777777777888888888887776
Q ss_pred HhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047221 358 LGRNCHPD-AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 358 ~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (509)
... .|| ...||.+-.+|.+.|+..+|...+++..+.+ .-+...|-.-+..-.+.|.+++|.+.+.++.+
T Consensus 546 vtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 654 343 5568888888888888888888888877776 33445566666666777888888887777664
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.14 E-value=0.00069 Score=59.97 Aligned_cols=119 Identities=12% Similarity=0.066 Sum_probs=72.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCC--HHHH
Q 047221 344 NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG-YFIFYR--YEDA 420 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~--~~~A 420 (509)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. +-+...+..+..+ |...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555555555555442 3456666666677777777777777777666553 2245556666654 345555 3677
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 421 YKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 421 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
.+++++..+.+.. +...+..+...+.+.|++++|+..|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777776665432 4455666666677777777777777777664
No 114
>PLN02789 farnesyltranstransferase
Probab=98.13 E-value=0.0039 Score=59.41 Aligned_cols=212 Identities=5% Similarity=-0.090 Sum_probs=130.9
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHH-HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047221 196 DICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEK-AFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIE 274 (509)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 274 (509)
.+++.+-..+...++.++|+.+.+++.+. .|+.. .|+.--.+....+..+++++..++.+.+.. +-+..+|+....
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~ 114 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRW 114 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHH
Confidence 36666777777888899999999988654 34443 333333322222324788888888888765 334445665555
Q ss_pred HHHhcCCH--HHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---C
Q 047221 275 MFSVLGLY--EMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN---G 345 (509)
Q Consensus 275 ~~~~~g~~--~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g 345 (509)
.+.+.|+. +++..+++++ +.|..+|+...-.+.+.|+++++++.++++.+.+ .-|...|+.....+.+. |
T Consensus 115 ~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 115 LAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccc
Confidence 55666652 5666666665 5678889888888888899999999999998876 45666777665555444 2
Q ss_pred Ch----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 047221 346 QD----ADACELLEEMLGRNCHPDAITYEIFIVYSCRV----GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFI 413 (509)
Q Consensus 346 ~~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 413 (509)
.. +++.....++... .+-|...|+-+...+... +...+|...+.+..+.+ ..+......|++.|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~-~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILA-NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHh-CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 22 3445555444443 233455666666666552 23345666666655432 2244555556666653
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.00096 Score=68.12 Aligned_cols=289 Identities=13% Similarity=0.075 Sum_probs=161.4
Q ss_pred CCHHHHHHHHHH--HhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhC-C-------
Q 047221 158 LSNASVIEILRV--LNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVY-Q------- 225 (509)
Q Consensus 158 ~~~~~~~~ll~~--~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~------- 225 (509)
-|+.|-.++++. |...|. .|.+-.+.+ .+..+|..|.+.|.+..+++-|.-.+..|... |
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I--------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI--------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH--------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 345555555553 344553 566655555 23338999999999999999888888877543 1
Q ss_pred -CccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC--CHHHHHHH
Q 047221 226 -VCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTER--KVSYYNIL 302 (509)
Q Consensus 226 -~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~l 302 (509)
..|+.... -+...+..-|.+++|..++++..+ |..|=..|-..|.+++|.++-+.-.+ =..||..-
T Consensus 796 ~q~~~e~ea--kvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 796 QQNGEEDEA--KVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY 864 (1416)
T ss_pred HhCCcchhh--HHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHH
Confidence 12322111 111123345669999999999887 45666778889999999988765321 12455555
Q ss_pred HHHHHhcCCccHHHHHHHHHH----------HcC---------CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047221 303 IKEMCRRCDFKGPRDLLVEMR----------QVG---------CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCH 363 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~----------~~g---------~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 363 (509)
...+-..++++.|++.|++-. ... -..|...|.--..-.-..|+++.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 555666777777777776432 111 011122222222222344555555555554432
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047221 364 PDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLA 443 (509)
Q Consensus 364 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 443 (509)
|-++++..|-.|+.++|-++-++- | |....-.|...|-..|++.+|..+|.+.. ++..-|
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAI 1000 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAI 1000 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHH
Confidence 345555556666666666655432 2 55555556667777777777777765442 344445
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHH
Q 047221 444 SLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSH-QEHMAKCLSSR 496 (509)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~ 496 (509)
..|-.++.-++ +.-+..|. ...-.....+.|-..| ..+.|..++.+
T Consensus 1001 RlcKEnd~~d~-L~nlal~s------~~~d~v~aArYyEe~g~~~~~AVmLYHk 1047 (1416)
T KOG3617|consen 1001 RLCKENDMKDR-LANLALMS------GGSDLVSAARYYEELGGYAHKAVMLYHK 1047 (1416)
T ss_pred HHHHhcCHHHH-HHHHHhhc------CchhHHHHHHHHHHcchhhhHHHHHHHh
Confidence 44433333222 22222221 1112333445555555 77777777754
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.12 E-value=0.00056 Score=60.52 Aligned_cols=120 Identities=8% Similarity=0.018 Sum_probs=72.7
Q ss_pred cCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCC--hHHH
Q 047221 309 RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVY-SCRVGK--FDVA 385 (509)
Q Consensus 309 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~--~~~a 385 (509)
.++.+++...++...+.. +.|...|..+...|...|++++|...|++..+.. +-+...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 344455555555555443 4556666666667777777777777777666652 2245555555554 345555 3677
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 386 FNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 386 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
.+++++..+.+ +-+..++..+...+.+.|++++|...|+++.+..
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777766653 2245566666666677777777777777766543
No 117
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.10 E-value=0.0011 Score=70.56 Aligned_cols=230 Identities=8% Similarity=0.022 Sum_probs=135.1
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047221 194 NSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALI 273 (509)
Q Consensus 194 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 273 (509)
+...|..|+..+...+++++|.++.+...+ ..|+...+-.+......+.+...++..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 445888889988889999999988885543 3466555554444333333333333333 233
Q ss_pred HHHHhcCCHHHHHHHHHHc---CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHH
Q 047221 274 EMFSVLGLYEMAKYVIKKT---ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350 (509)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 350 (509)
.......++.....+.+.| ..+..++-.+..+|-+.|+.++|..+++++.+.. .-|..+.|.+...|... ++++|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHH
Confidence 3333333443333333333 3344566677777777777777777777777765 55667777777777777 77777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH---H--HcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047221 351 CELLEEMLGRNCHPDAITYEIFIVYS---C--RVGKFDVAFNFFNQMVKR-GLQPRLATHAAFIKGYFIFYRYEDAYKYV 424 (509)
Q Consensus 351 ~~~~~~m~~~g~~p~~~~~~~li~~~---~--~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 424 (509)
.+++....+.-+ +..-|+.+...+ + ...+.+.-.++.+.+... |..--+.++-.+...|....+++++..++
T Consensus 169 ~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 169 ITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 777776655410 111122221111 1 112333333333333332 32333455666778888999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHH
Q 047221 425 VLSADKYKSSSNMLYSLLASLHD 447 (509)
Q Consensus 425 ~~m~~~~~~p~~~~~~~li~~~~ 447 (509)
+.+.+..-. |.....-++.+|.
T Consensus 247 K~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCc-chhhHHHHHHHHH
Confidence 999887543 4555566666665
No 118
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=0.007 Score=58.77 Aligned_cols=137 Identities=13% Similarity=0.051 Sum_probs=68.6
Q ss_pred HHhcCCccHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChH
Q 047221 306 MCRRCDFKGPRDLLVEMRQVGCEPIT-LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD-AITYEIFIVYSCRVGKFD 383 (509)
Q Consensus 306 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 383 (509)
+...|+.++|+..++.+... .||. .-+......+.+.++.++|.+.++.+... .|+ ....-.+-.+|.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChH
Confidence 33445555555555555544 3332 22233444555555555555555555554 233 333344445555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047221 384 VAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 384 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 463 (509)
+|..+++..... .+-|...|..|..+|...|+..+|..-. ..+|...|++++|+..+....
T Consensus 392 eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHH
Confidence 555555554443 2334555555555555555555544333 223334555566655555554
Q ss_pred HC
Q 047221 464 KN 465 (509)
Q Consensus 464 ~~ 465 (509)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 43
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=0.007 Score=58.77 Aligned_cols=177 Identities=13% Similarity=0.048 Sum_probs=116.3
Q ss_pred CCHHHHHHHHHHcC-------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHH
Q 047221 280 GLYEMAKYVIKKTE-------RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACE 352 (509)
Q Consensus 280 g~~~~A~~~~~~m~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 352 (509)
.++.+++..-++++ ++...+...+.+......-..+..++.+-.+.+ -...-|..-+ .+...|++++|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG~A~-~~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYGRAL-QTYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHHHHH-HHHHhcccchHHH
Confidence 35555555555552 344555555555444443333333333333211 1122233333 4557788889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 353 LLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR-LATHAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 353 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
.++.+.+. .+-|...+......+.+.++.++|.+.++.+... .|+ ...+-.+..+|.+.|+..+|..++++.....
T Consensus 328 ~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 98888776 3445556666678888889999999999888866 455 4556667888888899998888888776543
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047221 432 KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 432 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 463 (509)
+-|...|..|..+|...|+..++..-..++.
T Consensus 405 -p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 405 -PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred -CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 4577788889999999888888877766654
No 120
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.05 E-value=0.00043 Score=57.90 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=64.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047221 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDK 448 (509)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 448 (509)
+..+...+.+.|++++|...|+...... +.+...|..+..++.+.|++++|...|++..... ..+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4445556667777777777777766553 3356666777777777777777777777776543 2355566667777777
Q ss_pred CCChHHHHHHHHHHHHCCCCcCHH
Q 047221 449 NNNPVMAKNVLSEMMKNGLRPNVS 472 (509)
Q Consensus 449 ~g~~~~a~~~~~~m~~~g~~p~~~ 472 (509)
.|+.++|++.|+...+ +.|+..
T Consensus 105 ~g~~~eAi~~~~~Al~--~~p~~~ 126 (144)
T PRK15359 105 MGEPGLAREAFQTAIK--MSYADA 126 (144)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCh
Confidence 7777777777777665 345443
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.0018 Score=57.67 Aligned_cols=166 Identities=13% Similarity=0.039 Sum_probs=121.7
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047221 293 ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIF 372 (509)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 372 (509)
+.|... ..+-..+...|+-+....+........ .-|....+..+....+.|++..|...|.+.... -++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHH
Confidence 334444 556667777788777777776654321 334445566888888899999999999888765 46788889999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 047221 373 IVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNP 452 (509)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 452 (509)
--+|.+.|+.++|..-|.+..+-.. -+...+|.|.-.|.-.|+.+.|..++......+.. |...-..+.-.....|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence 9999999999999999988876622 24556777777788889999999998887766533 444556677778888999
Q ss_pred HHHHHHHHHHH
Q 047221 453 VMAKNVLSEMM 463 (509)
Q Consensus 453 ~~a~~~~~~m~ 463 (509)
++|.++-..-.
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 99888765543
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.99 E-value=0.021 Score=56.21 Aligned_cols=342 Identities=12% Similarity=0.126 Sum_probs=202.2
Q ss_pred CCCCHHHHHHHHHHHhcCC-chHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHH
Q 047221 156 VSLSNASVIEILRVLNSEK-VSALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFG 234 (509)
Q Consensus 156 ~~~~~~~~~~ll~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~ 234 (509)
.+-|..+|..+|+-+...+ +++++.++++.+.-|... ..|..-|..-.+.++++..+.+|.+.+..-+ +...|.
T Consensus 16 nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~s~---r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~ 90 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPSSP---RAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWK 90 (656)
T ss_pred CCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHH
Confidence 4567889999999998776 489999999988888644 4899999999999999999999999876644 567777
Q ss_pred HHHHHHHhccCCHHH----HHHHHHH-HHHcCCCCCH-HHHHHHHHH---------HHhcCCHHHHHHHHHHcC--C--C
Q 047221 235 FLPVLISSKALTKKG----IWRVVEV-LNQVGGSCLV-SGVRALIEM---------FSVLGLYEMAKYVIKKTE--R--K 295 (509)
Q Consensus 235 ~ll~~~~~~~~~~~~----a~~~~~~-m~~~g~~~~~-~~~~~li~~---------~~~~g~~~~A~~~~~~m~--~--~ 295 (509)
..|.-.....+.... ..+.|+- +.+.|..+-. ..|+..+.- |....+++..+++++++- | +
T Consensus 91 lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 91 LYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcccc
Confidence 778733333333333 3334443 3345644433 234444433 444456777888888862 2 1
Q ss_pred -------HHHHHHHHHHHH-------hcCCccHHHHHHHHHHH--cCCCCChHH---------------HHHHHH-----
Q 047221 296 -------VSYYNILIKEMC-------RRCDFKGPRDLLVEMRQ--VGCEPITLT---------------YNYVLG----- 339 (509)
Q Consensus 296 -------~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~--~g~~p~~~t---------------~~~li~----- 339 (509)
-..|-.=|+... +...+..|.++++++.. .|+..+..+ |-.+|.
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 111211111111 12234455555555542 232211111 211111
Q ss_pred --------------------------------------------HHHhcCCh-------HHHHHHHHHHHhCCCCCCHHH
Q 047221 340 --------------------------------------------VLCKNGQD-------ADACELLEEMLGRNCHPDAIT 368 (509)
Q Consensus 340 --------------------------------------------~~~~~g~~-------~~a~~~~~~m~~~g~~p~~~~ 368 (509)
.+...|+. +++..+++.....-..-+..+
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~L 330 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLL 330 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122222 233334433332211112222
Q ss_pred HHHHHHHHHHc---CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 047221 369 YEIFIVYSCRV---GKFDVAFNFFNQMVKR-GLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSS-SNMLYSLLA 443 (509)
Q Consensus 369 ~~~li~~~~~~---g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li 443 (509)
|..+.+---.. ...+.....++++... ...|+ .+|..+|..-.+...++.|..+|.+..+.+..+ .+..+++++
T Consensus 331 y~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~m 409 (656)
T KOG1914|consen 331 YFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALM 409 (656)
T ss_pred HHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHH
Confidence 32222111111 1234445555555433 23443 467778888888999999999999999988877 777888888
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047221 444 SLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSS 505 (509)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 505 (509)
.-|| .++.+-|.++|+-=.+. +.-+..--...++-+.+.++-..|..+|++....++.++
T Consensus 410 Ey~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 410 EYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred HHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 8777 56778999999875543 222333445566777788888888888888887755543
No 123
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.0018 Score=63.75 Aligned_cols=246 Identities=11% Similarity=-0.062 Sum_probs=176.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHH
Q 047221 244 ALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLL 319 (509)
Q Consensus 244 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (509)
.|.+.+|.-.|+...+.. +-+...|--|...-...++-..|+..+++. +.|....-+|.-.|...|.-.+|++.+
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 444888888888887654 556788999999999999888888888774 456788888888999999999999999
Q ss_pred HHHHHcCCC--------CChHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 047221 320 VEMRQVGCE--------PITLTYNYVLGVLCKNGQDADACELLEEMLGR-NCHPDAITYEIFIVYSCRVGKFDVAFNFFN 390 (509)
Q Consensus 320 ~~m~~~g~~--------p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 390 (509)
+.-.....+ ++...-.. ........+....++|-++... +..+|..++..|--.|--.|++++|.+.|+
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 887654210 01000000 1112222344556666666544 544677778888888888999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-----
Q 047221 391 QMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN----- 465 (509)
Q Consensus 391 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----- 465 (509)
...... +-|...||-|-..++...+-++|..-|.+..+....--.+-|| |.-.|...|.+++|.+.|-+.+..
T Consensus 455 ~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 455 AALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALSMQRKSR 532 (579)
T ss_pred HHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHHhhhccc
Confidence 998763 3367889999999999999999999999988763222223344 777899999999999998776542
Q ss_pred ----CCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047221 466 ----GLRPNVSVYRRVLKHLHTSHQEHMAKCLS 494 (509)
Q Consensus 466 ----g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 494 (509)
+-.++...|.+|=.++.-.++.|.+.+..
T Consensus 533 ~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 533 NHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred ccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 11234457777777777777777555543
No 124
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.97 E-value=0.015 Score=53.85 Aligned_cols=287 Identities=8% Similarity=-0.046 Sum_probs=165.3
Q ss_pred HHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHH---HHhccCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhc
Q 047221 204 NCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVL---ISSKALTKKGIWRVVEVLNQVGGSCLVSGV-RALIEMFSVL 279 (509)
Q Consensus 204 ~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~---~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~ 279 (509)
.+...|++..|+.-|....+. |+..|-++... |+. .|+-..|+.-+....+ .+||-..- -.-...+.+.
T Consensus 47 ~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLA-mGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLA-MGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhh-hcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence 344455666666655555433 33333333221 121 2223444444444443 23433221 1222345566
Q ss_pred CCHHHHHHHHHHc---CCC--------------HHHHH--HHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 047221 280 GLYEMAKYVIKKT---ERK--------------VSYYN--ILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGV 340 (509)
Q Consensus 280 g~~~~A~~~~~~m---~~~--------------~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 340 (509)
|.++.|..=|+.+ .|+ ...|+ ..+..+...|+...|++....+.+-. +-|...|..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence 7777777666664 121 11122 23444556788888888888877653 4566777777788
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH----HHH---------
Q 047221 341 LCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATH----AAF--------- 407 (509)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~----~~l--------- 407 (509)
|...|++..|..=++...+.. .-+..++--+-..+...|+.+.++...++-.+. .||-..+ -.|
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHH
Confidence 888888888876666554442 224444445556677778888888777777654 4553221 111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHh
Q 047221 408 IKGYFIFYRYEDAYKYVVLSADKYKSSSNM---LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN-VSVYRRVLKHLHT 483 (509)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 483 (509)
+......++|.++.+-.+...+....-..+ .+..+-.++...|++.+|++.-.+.++ +.|| ..++.--..+|.-
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhh
Confidence 111234566777777766666554332222 233455566677888888888888876 5555 6677777788888
Q ss_pred cCCHHHHHHHHHHHHhCCCC
Q 047221 484 SHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 484 ~g~~~~a~~~~~~m~~~~~~ 503 (509)
...+|.|+.-|+...+.+..
T Consensus 354 dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKALELNES 373 (504)
T ss_pred hHHHHHHHHHHHHHHhcCcc
Confidence 88888888888887766543
No 125
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.97 E-value=7e-06 Score=48.32 Aligned_cols=29 Identities=34% Similarity=0.626 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHcC
Q 047221 298 YYNILIKEMCRRCDFKGPRDLLVEMRQVG 326 (509)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 326 (509)
+||.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 126
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.94 E-value=0.00064 Score=66.16 Aligned_cols=121 Identities=12% Similarity=0.183 Sum_probs=62.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 047221 371 IFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNN 450 (509)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 450 (509)
+|+..+...++++.|..+|+++.+.. |+ ....|+..+...++-.+|.+++++..+.. +-+......-...|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 33444444555555555555555542 33 22334555555555555555555554331 123444444444455556
Q ss_pred ChHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 451 NPVMAKNVLSEMMKNGLRPNV-SVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 451 ~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
+++.|+++.+++.+ ..|+. .+|..|..+|.+.|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 66666666666555 33333 356666666666666666665555554
No 127
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.94 E-value=0.00017 Score=55.45 Aligned_cols=77 Identities=21% Similarity=0.148 Sum_probs=46.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCC--------ChHHHHHHHHHHHHCCCCcCHHHHHHH
Q 047221 407 FIKGYFIFYRYEDAYKYVVLSADKYK-SSSNMLYSLLASLHDKNN--------NPVMAKNVLSEMMKNGLRPNVSVYRRV 477 (509)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~t~~~l 477 (509)
.|..+...|++...-.+|+.+++.|+ .|...+|+.++.+.++.. ++-+.+.+|+.|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444666666666666666666 556666666665555432 233466677777777777777777777
Q ss_pred HHHHHh
Q 047221 478 LKHLHT 483 (509)
Q Consensus 478 l~~~~~ 483 (509)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 776654
No 128
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.92 E-value=0.0008 Score=55.57 Aligned_cols=104 Identities=14% Similarity=0.110 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHD 447 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 447 (509)
....+...+.+.|++++|.+.|+.+...+ +.+...+..+...|.+.|++++|..+++...+.+ ..+...+..+...|.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 34445555666666666666666665543 3345566666666666666666666666655543 224445555666666
Q ss_pred hCCChHHHHHHHHHHHHCCCCcCHHHHH
Q 047221 448 KNNNPVMAKNVLSEMMKNGLRPNVSVYR 475 (509)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~ 475 (509)
..|++++|++.|++..+ ..|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~--~~p~~~~~~ 122 (135)
T TIGR02552 97 ALGEPESALKALDLAIE--ICGENPEYS 122 (135)
T ss_pred HcCCHHHHHHHHHHHHH--hccccchHH
Confidence 67777777777766665 334444433
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.92 E-value=0.00044 Score=57.80 Aligned_cols=89 Identities=10% Similarity=-0.147 Sum_probs=48.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ 346 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 346 (509)
.+...+...|++++|...|+.. +.+...|..+...+.+.|++++|...|++..+.. +.+..++..+..++...|+
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 4455555556666665555553 3345555555555555555555655555555443 3344555555555555555
Q ss_pred hHHHHHHHHHHHhC
Q 047221 347 DADACELLEEMLGR 360 (509)
Q Consensus 347 ~~~a~~~~~~m~~~ 360 (509)
.++|...|+...+.
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555543
No 130
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.031 Score=55.63 Aligned_cols=154 Identities=10% Similarity=0.046 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHH--HHHHh--ccCCHHHHHHHHHHhhhCCCccCH-H
Q 047221 159 SNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLV--IDNCG--RLDDYETMRQLLNDFNVYQVCLNE-K 231 (509)
Q Consensus 159 ~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~l--i~~~~--~~g~~~~A~~l~~~m~~~~~~p~~-~ 231 (509)
+...+.+-+-++.+.++ +|+.+.+.- +-.. +++.. =.+|| +.+..++|+..++. ..++. .
T Consensus 45 d~~a~~cKvValIq~~ky~~ALk~ikk~----~~~~----~~~~~~fEKAYc~Yrlnk~Dealk~~~~-----~~~~~~~ 111 (652)
T KOG2376|consen 45 DEDAIRCKVVALIQLDKYEDALKLIKKN----GALL----VINSFFFEKAYCEYRLNKLDEALKTLKG-----LDRLDDK 111 (652)
T ss_pred cHhhHhhhHhhhhhhhHHHHHHHHHHhc----chhh----hcchhhHHHHHHHHHcccHHHHHHHHhc-----ccccchH
Confidence 34455555555555554 677554443 3222 44444 44554 67889999988873 33333 2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC---------------------------CHHHH---HHHHHHHHhcCC
Q 047221 232 AFGFLPVLISSKALTKKGIWRVVEVLNQVGGSC---------------------------LVSGV---RALIEMFSVLGL 281 (509)
Q Consensus 232 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~---------------------------~~~~~---~~li~~~~~~g~ 281 (509)
+...--. .+-+.+++++|..+++.+.+.+.+. ...+| .+....+...|+
T Consensus 112 ll~L~AQ-vlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 112 LLELRAQ-VLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHH-HHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence 4444444 3334556999999999996644111 01122 233445667788
Q ss_pred HHHHHHHHHHc--------C-CC-----HH-----HHHHHHHHHHhcCCccHHHHHHHHHHHcC
Q 047221 282 YEMAKYVIKKT--------E-RK-----VS-----YYNILIKEMCRRCDFKGPRDLLVEMRQVG 326 (509)
Q Consensus 282 ~~~A~~~~~~m--------~-~~-----~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~g 326 (509)
+..|+++++.. . .| .. .---|.-.+-..|+.++|..++....+..
T Consensus 191 y~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 191 YNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 88888888764 1 11 11 11123345556788888888888888765
No 131
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.91 E-value=0.00021 Score=54.90 Aligned_cols=77 Identities=10% Similarity=0.130 Sum_probs=43.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 047221 336 YVLGVLCKNGQDADACELLEEMLGRNC-HPDAITYEIFIVYSCRVG--------KFDVAFNFFNQMVKRGLQPRLATHAA 406 (509)
Q Consensus 336 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~p~~~~~~~ 406 (509)
..|..|...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|...+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344444455666666666666666666 666666666666555432 23344555555555555666666655
Q ss_pred HHHHHH
Q 047221 407 FIKGYF 412 (509)
Q Consensus 407 li~~~~ 412 (509)
++..+.
T Consensus 110 vl~~Ll 115 (120)
T PF08579_consen 110 VLGSLL 115 (120)
T ss_pred HHHHHH
Confidence 555544
No 132
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.88 E-value=1.7e-05 Score=46.65 Aligned_cols=30 Identities=7% Similarity=0.277 Sum_probs=28.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCC
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVYQV 226 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~ 226 (509)
+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 899999999999999999999999998874
No 133
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.00028 Score=68.97 Aligned_cols=122 Identities=15% Similarity=0.211 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047221 293 ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV--GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYE 370 (509)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 370 (509)
+-..+....+++.+....+++++..++.+.+.. ....-..|..++|+.|.+.|..++++.+++.=...|+=||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345666777777777777788888888887765 233334555688888888888888888888888888888888888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047221 371 IFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF 414 (509)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 414 (509)
.||+.+.+.|++..|.++..+|...+...+..|+.-.+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888777777777777666666655
No 134
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.00023 Score=69.54 Aligned_cols=124 Identities=10% Similarity=0.017 Sum_probs=78.1
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047221 326 GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR--NCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT 403 (509)
Q Consensus 326 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 403 (509)
+..........+++.+....+++++..++.+.... ....-..|..++|+.|.+.|..+++..+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34555666666666666666666676666666554 1112223344677777777777777777766666677777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 047221 404 HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKN 449 (509)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 449 (509)
+|.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777776666665555656655555555444
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.85 E-value=0.00073 Score=55.80 Aligned_cols=90 Identities=14% Similarity=0.064 Sum_probs=44.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 344 (509)
...+...|...|++++|...|+.+ +.+...|..+...|.+.|++++|...+++..+.+ +.+..++..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 344444455555555555555443 2334445555555555555555555555544432 23344444444455555
Q ss_pred CChHHHHHHHHHHHh
Q 047221 345 GQDADACELLEEMLG 359 (509)
Q Consensus 345 g~~~~a~~~~~~m~~ 359 (509)
|++++|.+.|+...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554444
No 136
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.042 Score=54.69 Aligned_cols=312 Identities=14% Similarity=0.094 Sum_probs=174.1
Q ss_pred hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCc---------------------------c
Q 047221 176 SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVC---------------------------L 228 (509)
Q Consensus 176 ~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~---------------------------p 228 (509)
+|+..++-. .+. |..+...=...+-+.|++++|.++|+.+.+.+.. .
T Consensus 97 ealk~~~~~---~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 97 EALKTLKGL---DRL---DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred HHHHHHhcc---ccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 566666633 332 2224555566788999999999999999655321 0
Q ss_pred CHHHHHHHHHHH--HhccCCHHHHHHHHHHHHHcC-------CCC------CHHH-HHHHHHHHHhcCCHHHHHHHHHHc
Q 047221 229 NEKAFGFLPVLI--SSKALTKKGIWRVVEVLNQVG-------GSC------LVSG-VRALIEMFSVLGLYEMAKYVIKKT 292 (509)
Q Consensus 229 ~~~~~~~ll~~~--~~~~~~~~~a~~~~~~m~~~g-------~~~------~~~~-~~~li~~~~~~g~~~~A~~~~~~m 292 (509)
...+|..+.... ....|.+.+|+++++...+.+ -.. ...+ --.|...+-..|+-++|..++..+
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 122444443322 224556999999999883311 111 1111 124556677899999999988876
Q ss_pred ----CCCH----HHHHHHHHHHHhcCCcc-HHHHHHHHHHH---------------c-----------------------
Q 047221 293 ----ERKV----SYYNILIKEMCRRCDFK-GPRDLLVEMRQ---------------V----------------------- 325 (509)
Q Consensus 293 ----~~~~----~~~~~li~~~~~~g~~~-~A~~~~~~m~~---------------~----------------------- 325 (509)
++|. +.-|.|+..-....-++ .++..++.... .
T Consensus 251 i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 251 IKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3442 33344443322221111 11111111000 0
Q ss_pred ----CCCCChHHHHHHHHHHHhc--CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH--------H
Q 047221 326 ----GCEPITLTYNYVLGVLCKN--GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFN--------Q 391 (509)
Q Consensus 326 ----g~~p~~~t~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~ 391 (509)
+..| ...+.+++..+.+. ....++..++...-+..-.-...+--+++......|+++.|.+++. .
T Consensus 331 a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 331 ASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 1111 12223333333221 1344555555554443211123445556667778899999998888 5
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 392 MVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK--YKSSS----NMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 392 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
+.+.+..|. +..+++..|.+.++-+.|-.++++.... .-.+. ..++.-....-.+.|+-++|..+++++.+.
T Consensus 410 ~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 410 ILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred hhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 555555554 4455677777777766666666655431 01111 123333344445779999999999999875
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 466 GLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 466 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
.++|..+...++.+|++. +.+.|+.+-+.+.
T Consensus 488 -n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 488 -NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred -CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 456888888888888764 5667776665544
No 137
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.82 E-value=0.027 Score=57.67 Aligned_cols=208 Identities=11% Similarity=0.030 Sum_probs=145.8
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC----CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCCh
Q 047221 256 VLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTE----RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPIT 331 (509)
Q Consensus 256 ~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 331 (509)
++....+.-|...|..|.-+...+|+++.+-+.|++.- .....|+.+-..|...|.-..|..++++-....-.|+.
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 33334556788899999999999999999999999963 34678999999999999999999999876644323544
Q ss_pred HHHHHHHH-HHH-hcCChHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHH
Q 047221 332 LTYNYVLG-VLC-KNGQDADACELLEEMLGR--NC--HPDAITYEIFIVYSCRV-----------GKFDVAFNFFNQMVK 394 (509)
Q Consensus 332 ~t~~~li~-~~~-~~g~~~~a~~~~~~m~~~--g~--~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~ 394 (509)
.+--.++. .|. +.|.+++++..-.+.... |. ......|-.+--+|... ..-.++.+.+++..+
T Consensus 393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 44333333 232 346677766666555541 11 11233444444444322 123467777777766
Q ss_pred CC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 395 RG-LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 395 ~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
.+ -.|++.-|- ---|+-.++++.|.+..++..+.+-..+...|..+.-.+.-.+++.+|+.+.+...+.
T Consensus 473 ~d~~dp~~if~l--alq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 473 FDPTDPLVIFYL--ALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred cCCCCchHHHHH--HHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 53 344444443 3346778999999999999999877889999999999999999999999999877653
No 138
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.047 Score=53.77 Aligned_cols=198 Identities=16% Similarity=0.088 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH-------H
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYE-------I 371 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-------~ 371 (509)
.-.+.+...+..+++.|++-+....+.. -+..-++..-.+|...|.+.+....-+.-.+.|-. ...-|+ .
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4456666667777778888777777653 34444556667777777777666555554444321 111122 2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-------------------------HHHHHHHcCCHHHHHHHHHH
Q 047221 372 FIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAA-------------------------FIKGYFIFYRYEDAYKYVVL 426 (509)
Q Consensus 372 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-------------------------li~~~~~~g~~~~A~~~~~~ 426 (509)
+-.+|.+.++++.|...|.+....-..|+..+-.. =-..+.+.|++..|.+.|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 33466667888888888888776655555444111 12236677899999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 427 SADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV-SVYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 427 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
+.... +-|...|..-.-+|.+.|.+..|++--+..++. .|+. .-|..=..++....+|+.|++.|++-.++++
T Consensus 384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 88776 557778888889999999999998887777664 3433 3344444455566788888888888777664
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.77 E-value=0.00091 Score=65.11 Aligned_cols=121 Identities=17% Similarity=0.120 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChH
Q 047221 270 RALIEMFSVLGLYEMAKYVIKKT-ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDA 348 (509)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 348 (509)
..|+..+...++++.|..+|+++ ..+....-.++..+...++-.+|++++++..+.. +-|......-...|.+.++++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHH
Confidence 34555555556666666666665 2223333445555555666666666666666432 334444444455566666666
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 349 DACELLEEMLGRNCHPD-AITYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 349 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
.|+++.+++.+. .|+ ..+|..|..+|.+.|+++.|+..+..+.
T Consensus 252 lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 252 LALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 677766666664 343 3466666677777777777766666553
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.0012 Score=55.37 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=51.6
Q ss_pred cCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCChH
Q 047221 379 VGKFDVAFNFFNQMVKRGLQPR---LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN--MLYSLLASLHDKNNNPV 453 (509)
Q Consensus 379 ~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~ 453 (509)
.++...+...++.+.+.. +.+ ....-.+...+...|++++|...|+........+.. ...-.|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555442 111 111222334455555555555555555554322211 12223444555555555
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047221 454 MAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSR 496 (509)
Q Consensus 454 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 496 (509)
+|+..++......+ ....+....+.|.+.|++++|...|++
T Consensus 103 ~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555544322222 222344444555555555555555543
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.75 E-value=0.0017 Score=54.36 Aligned_cols=126 Identities=15% Similarity=0.154 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHH
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGRNCHPD---AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRL--ATHAAF 407 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~l 407 (509)
.|..++..+ ..++...+...++.+.+.. +.+ ....-.+-..+...|++++|...|+.+......++. ...-.|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677777777777777652 222 122223346667778888888888887776522221 233446
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 047221 408 IKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 462 (509)
...+...|++++|+..++....... ....+......|.+.|+.++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6677777888888888766443332 3335566777777888888888877653
No 142
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.72 E-value=0.00067 Score=58.91 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=72.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----------
Q 047221 351 CELLEEMLGRNCHPDAITYEIFIVYSCRV-----GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF----------- 414 (509)
Q Consensus 351 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------- 414 (509)
...|+.... -..|..+|..+|..|.+. |.++=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 444554422 245889999999999855 77888888899999999999999999999987542
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 047221 415 -----YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNN 451 (509)
Q Consensus 415 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 451 (509)
.+-+-|++++++|...|+.||..|+..+++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2235566777777777777777777777776665554
No 143
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.69 E-value=0.0054 Score=62.92 Aligned_cols=257 Identities=12% Similarity=0.117 Sum_probs=135.0
Q ss_pred hHHHHHHH--HHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-C--------CCC
Q 047221 196 DICSLVID--NCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQV-G--------GSC 264 (509)
Q Consensus 196 ~~~~~li~--~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-g--------~~~ 264 (509)
.+--++++ .|...|+.+.|.+-.+-++ +...|..+..+|.. ..+++-|.-.+..|... | -.+
T Consensus 727 ~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVk-T~RLDVAkVClGhm~~aRgaRAlR~a~q~~ 799 (1416)
T KOG3617|consen 727 STRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVK-TRRLDVAKVCLGHMKNARGARALRRAQQNG 799 (1416)
T ss_pred HHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhh-hccccHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence 35555543 3566677777766655542 56667666664443 33366666666655431 1 011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 047221 265 LVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344 (509)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 344 (509)
+ .+-....-.....|.+++|+.++.+-++ |..|=..|-..|+|++|+++-+.=-+-.+ ..||..-..-+-..
T Consensus 800 ~-e~eakvAvLAieLgMlEeA~~lYr~ckR----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 800 E-EDEAKVAVLAIELGMLEEALILYRQCKR----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEAR 871 (1416)
T ss_pred c-chhhHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhh
Confidence 1 1111222223345666666666655432 23334445556666666666543222111 23444444445556
Q ss_pred CChHHHHHHHHHH----------HhCC---------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047221 345 GQDADACELLEEM----------LGRN---------CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHA 405 (509)
Q Consensus 345 g~~~~a~~~~~~m----------~~~g---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 405 (509)
++.+.|++.|+.- .... -..|...|.---...-..|+++.|+.+|.... -|-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhh
Confidence 6666776666542 1110 01122222222222233455555555554432 244
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 047221 406 AFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSH 485 (509)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 485 (509)
+++...|-.|+.++|-++-++ .| |....-.|...|-..|++.+|...|.+.. +|...|+.|-..+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e---sg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE---SG---DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKEND 1007 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh---cc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcC
Confidence 455555666777777666543 22 55555568888889999999999888764 6777787776655
Q ss_pred CHHHHH
Q 047221 486 QEHMAK 491 (509)
Q Consensus 486 ~~~~a~ 491 (509)
.-|+..
T Consensus 1008 ~~d~L~ 1013 (1416)
T KOG3617|consen 1008 MKDRLA 1013 (1416)
T ss_pred HHHHHH
Confidence 544433
No 144
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.68 E-value=0.00068 Score=58.88 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047221 294 RKVSYYNILIKEMCRR-----CDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAIT 368 (509)
Q Consensus 294 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 368 (509)
.|..+|..+|..|.+. |.++=....+..|.+-|+.-|..+|+.||+.+=+ |.+- -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~----------- 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE----------- 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----------
Confidence 4555666666666543 4455555556666666666666666666665443 2111 00011100
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047221 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416 (509)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 416 (509)
. . -...+-+-|++++++|...|+.||..|+..|++.+++.+.
T Consensus 112 ---F-~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ---F-M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---h-c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0 0 0112345566777777777777777777777777655543
No 145
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.60 E-value=0.12 Score=53.28 Aligned_cols=342 Identities=10% Similarity=-0.033 Sum_probs=192.7
Q ss_pred CCCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCcc-CHH
Q 047221 155 SVSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCL-NEK 231 (509)
Q Consensus 155 ~~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~ 231 (509)
.+.-++..|..+--++..+|+ .+.+.|+.. .|-.....+.|+.+-..|.-.|.-..|..++++-....-.| |..
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~---~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQA---LPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 345577888888888888886 566777776 13222333489999999999999889998888764333223 444
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc--C--CCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHc----
Q 047221 232 AFGFLPVLISSKALTKKGIWRVVEVLNQV--G--GSCLVSGVRALIEMFSVLG-----------LYEMAKYVIKKT---- 292 (509)
Q Consensus 232 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~--g--~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m---- 292 (509)
.+-..-..|..+-+..+++..+-.+.... + -......|-.+.-+|...- ...++.+.+++.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 44444455666666666666666555541 1 1112223333333333221 112233333332
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CC---------
Q 047221 293 ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR-NC--------- 362 (509)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~--------- 362 (509)
+.|..+.-.+---|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+...+. |.
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 11222222222334445555566665555555543445555555555555555555555544432221 10
Q ss_pred --------------------------------------------------------------------------------
Q 047221 363 -------------------------------------------------------------------------------- 362 (509)
Q Consensus 363 -------------------------------------------------------------------------------- 362 (509)
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence
Q ss_pred ------CCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 363 ------HPD------AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 363 ------~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
.|+ ...|......+.+.+..++|.-.+.+..+. .......|...-..+...|.+++|.+.|......
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 001 011222233344444445554444444332 1223334454555566678888888888766544
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 431 YKSSSNMLYSLLASLHDKNNNPVMAKN--VLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 431 ~~~p~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
+. -++....++...+.+.|+..-|.. ++.++.+.+ .-+...|..+-..+.+.|+.+.|-+.|.--.+...
T Consensus 714 dP-~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 714 DP-DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CC-CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 21 133466788888889998887777 888888854 33677888898999999999999999887665543
No 146
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.60 E-value=0.13 Score=53.78 Aligned_cols=223 Identities=14% Similarity=0.105 Sum_probs=137.4
Q ss_pred HHHHHHhcCC-chHHHHHHHhhccCCCCccChhHHHHHHHHH--hccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHH
Q 047221 165 EILRVLNSEK-VSALCFLKYMREIMPEFYKNSDICSLVIDNC--GRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLIS 241 (509)
Q Consensus 165 ~ll~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~ 241 (509)
-+...+.+.. +.|++-.+.+.+-.|+. .|..++.++ .|.|+.++|..+++.....+.. |..|..++-. |+
T Consensus 15 pi~d~ld~~qfkkal~~~~kllkk~Pn~-----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~-~y 87 (932)
T KOG2053|consen 15 PIYDLLDSSQFKKALAKLGKLLKKHPNA-----LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQN-VY 87 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHCCCc-----HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHH-HH
Confidence 3444444333 47888888875556763 366666664 5778888888888877544433 6666666665 66
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH----HHHHHHHHcCCCHHHHHHHHHHHHhcCC-c----
Q 047221 242 SKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYE----MAKYVIKKTERKVSYYNILIKEMCRRCD-F---- 312 (509)
Q Consensus 242 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~m~~~~~~~~~li~~~~~~g~-~---- 312 (509)
...++.+++..+++..... .|+......+..+|.+.+.+. .|.++++..+.+...+=++++.+.+.-. .
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~ 165 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELL 165 (932)
T ss_pred HHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccc
Confidence 7777788888888887753 455666777888888877664 3566666667776666666666665432 1
Q ss_pred -----cHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047221 313 -----KGPRDLLVEMRQVGCEP-ITLTYNYVLGVLCKNGQDADACELLE-EMLGRNCHPDAITYEIFIVYSCRVGKFDVA 385 (509)
Q Consensus 313 -----~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 385 (509)
.-|.+.++.+.+.+-+. +..-...-+...-..|++++|..++. ...+.-..-+...-+--+..+...+++.+.
T Consensus 166 ~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l 245 (932)
T KOG2053|consen 166 DPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQEL 245 (932)
T ss_pred cchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHH
Confidence 22444555555443111 11111122233446677888888873 333332333444555666777777888888
Q ss_pred HHHHHHHHHCC
Q 047221 386 FNFFNQMVKRG 396 (509)
Q Consensus 386 ~~~~~~m~~~g 396 (509)
.++-.++...|
T Consensus 246 ~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 246 FELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHhC
Confidence 88888877775
No 147
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.58 E-value=0.036 Score=58.43 Aligned_cols=321 Identities=12% Similarity=-0.020 Sum_probs=153.6
Q ss_pred hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHH-HHHHHhccCCHHHHHHHH
Q 047221 176 SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFL-PVLISSKALTKKGIWRVV 254 (509)
Q Consensus 176 ~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~~a~~~~ 254 (509)
.|.+-|+....+++ .|...+....+.|++..++++|..+.-..-+.. ..-...++.+ ...+.-..+....++.-|
T Consensus 510 RA~kCf~KAFeLDa---tdaeaaaa~adtyae~~~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~f 585 (1238)
T KOG1127|consen 510 RAKKCFDKAFELDA---TDAEAAAASADTYAEESTWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEF 585 (1238)
T ss_pred HHHHHHHHHhcCCc---hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHH
Confidence 46666666655555 355577777777777777777777732221110 0011111111 111222344466666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHc-----
Q 047221 255 EVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERK-VSYYNILIKEMCRRCDFKGPRDLLVEMRQV----- 325 (509)
Q Consensus 255 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 325 (509)
+...+.. +-|...|..|..+|.++|++..|.++|.+. .|+ ...---....-+..|.+++|+..+......
T Consensus 586 QsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~ 664 (1238)
T KOG1127|consen 586 QSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER 664 (1238)
T ss_pred HHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 6665543 446667888888888888888888888765 332 222122223345677788888777665532
Q ss_pred -CCCCChHHHHHHHHHHHhcCChHHHHHHHHHH-------HhCCCCCCHHHHHHHHHHHHHcCChH------HHHHH-HH
Q 047221 326 -GCEPITLTYNYVLGVLCKNGQDADACELLEEM-------LGRNCHPDAITYEIFIVYSCRVGKFD------VAFNF-FN 390 (509)
Q Consensus 326 -g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m-------~~~g~~p~~~~~~~li~~~~~~g~~~------~a~~~-~~ 390 (509)
+..--..++-.+...+.-.|-..+|...++.- .......+...|-.+-++|.-.-..+ ....+ +.
T Consensus 665 ~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~ 744 (1238)
T KOG1127|consen 665 TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSK 744 (1238)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHH
Confidence 11111233333333333333333333333322 11111111222222111111000000 00000 01
Q ss_pred HHHHCCC--------------------CCCHHHHHHHHHHHHH----c----CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047221 391 QMVKRGL--------------------QPRLATHAAFIKGYFI----F----YRYEDAYKYVVLSADKYKSSSNMLYSLL 442 (509)
Q Consensus 391 ~m~~~g~--------------------~p~~~~~~~li~~~~~----~----g~~~~A~~~~~~m~~~~~~p~~~~~~~l 442 (509)
+....+. ..+..+|..|...|.+ + .+...|...++...+.. .-+..+|++|
T Consensus 745 q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaL 823 (1238)
T KOG1127|consen 745 QLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNAL 823 (1238)
T ss_pred HHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHH
Confidence 1111111 1123334444443333 1 12345666665544331 2255666665
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047221 443 ASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGS 504 (509)
Q Consensus 443 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 504 (509)
.-. ...|.+.-|...|-+-... .+....+|..+--.|.+..+++.|...|++.+...+..
T Consensus 824 GVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 824 GVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN 883 (1238)
T ss_pred HHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchh
Confidence 544 4456666666665544432 22344566666666777777888888877777666543
No 148
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.56 E-value=0.069 Score=49.67 Aligned_cols=64 Identities=17% Similarity=0.081 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHH---hcCC--chHHHHHHHhhccCCCCccChhHHHHHH---HHHhccCCHHHHHHHHHHhhhC
Q 047221 155 SVSLSNASVIEILRVL---NSEK--VSALCFLKYMREIMPEFYKNSDICSLVI---DNCGRLDDYETMRQLLNDFNVY 224 (509)
Q Consensus 155 ~~~~~~~~~~~ll~~~---~~~~--~~A~~~~~~~~~~~p~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~ 224 (509)
.+..|+..|.++.+.- -..| +.|+.=+..+..++|++. .+-| ..+.+.|.++.|..=|+.....
T Consensus 64 Ave~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~------~ARiQRg~vllK~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 64 AVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM------AARIQRGVVLLKQGELEQAEADFDQVLQH 135 (504)
T ss_pred HHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH------HHHHHhchhhhhcccHHHHHHHHHHHHhc
Confidence 3566666666666542 2333 357777777766677633 2222 2456777777777777776554
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.54 E-value=0.0017 Score=48.90 Aligned_cols=91 Identities=13% Similarity=0.012 Sum_probs=41.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 047221 407 FIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQ 486 (509)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 486 (509)
+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.++...+.. ..+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 34444444555555555544443321 112334444444445555555555555544431 1122344444445555555
Q ss_pred HHHHHHHHHHHHh
Q 047221 487 EHMAKCLSSRYSS 499 (509)
Q Consensus 487 ~~~a~~~~~~m~~ 499 (509)
+++|...+++..+
T Consensus 84 ~~~a~~~~~~~~~ 96 (100)
T cd00189 84 YEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHc
Confidence 5555555555443
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.53 E-value=0.0027 Score=50.88 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRGL--QPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKS--SSNMLYSLLA 443 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li 443 (509)
++..+...+.+.|++++|...|.++....- ......+..+..++.+.|+++.|...|+.+...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455556666666666666666654421 111234455666666666666666666666543211 1133455555
Q ss_pred HHHHhCCChHHHHHHHHHHHHC
Q 047221 444 SLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
..+.+.|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.51 E-value=0.0018 Score=48.76 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=21.1
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 358 (509)
...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443321 1122333333333444444444444444333
No 152
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.51 E-value=0.11 Score=54.40 Aligned_cols=216 Identities=11% Similarity=0.003 Sum_probs=145.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHH
Q 047221 245 LTKKGIWRVVEVLNQVGGSCLVSGVRALIEM--FSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDL 318 (509)
Q Consensus 245 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~ 318 (509)
+++..|......+.+.. |+.. |...+.+ ..+.|+.++|..+++.. ..|..|...+-.+|.+.++.++|..+
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 34888888888776542 3322 3344444 45789999999888886 35788889999999999999999999
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHH
Q 047221 319 LVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK----------FDVAFNF 388 (509)
Q Consensus 319 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~~ 388 (509)
|++..+. -|+..-...+..+|.+.+++.+-.++--+|-+. .+-+.+.+=++++.+.+.-. ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9988865 677777888888899988887654444444442 33455666566666654321 2346667
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 047221 389 FNQMVKRGLQP-RLATHAAFIKGYFIFYRYEDAYKYV-VLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNG 466 (509)
Q Consensus 389 ~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 466 (509)
++.+.+.+-+. +..-.---.......|++++|.+++ ....+.-..-+...-+.-+..+...++|.+..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 77776654111 1111222233345678899999988 344444444555566677778888889998888888887765
No 153
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.51 E-value=0.0024 Score=60.01 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047221 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGV-LCKNGQDADACELLEEMLGRNCHPDAITYEIFIVY 375 (509)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 375 (509)
.+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... |...++.+.|.+||+...+. +..+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356677777777777777777777776443 2233333333333 33345566677777777765 45566667777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 376 SCRVGKFDVAFNFFNQMVKRGLQPRL---ATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
+.+.++.+.|..+|++.... +.++. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777654 22222 36777777777777777777777776653
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.42 E-value=0.00036 Score=52.27 Aligned_cols=80 Identities=18% Similarity=0.079 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHhcCCHHHHH
Q 047221 414 FYRYEDAYKYVVLSADKYKS-SSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV-SVYRRVLKHLHTSHQEHMAK 491 (509)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~ 491 (509)
.|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|++++++ .+ ..|+. .....+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35666666666666654331 1333344456666666666666666665 21 22222 23333455566666666666
Q ss_pred HHHHH
Q 047221 492 CLSSR 496 (509)
Q Consensus 492 ~~~~~ 496 (509)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.40 E-value=0.0064 Score=57.28 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=11.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 047221 271 ALIEMFSVLGLYEMAKYVIKK 291 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~ 291 (509)
...+.|...|++++|...|.+
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~k 60 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEK 60 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHH
Confidence 344455556666666665554
No 156
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.39 E-value=0.0062 Score=57.20 Aligned_cols=143 Identities=8% Similarity=0.055 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGRN-CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (509)
.+|..+|...-+.+..+.|.++|.+..+.+ +..++....++|..+ ..++.+.|..+|+...+. +..+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 478888899999999999999999998653 334444444444332 356777799999998876 55678889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 047221 411 YFIFYRYEDAYKYVVLSADKYKSSS---NMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLK 479 (509)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 479 (509)
+.+.|+.+.|..+|++.... +.++ ...|...+.-=.+.|+.+.+.++.+++.+. .|+...+..+++
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ 148 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSD 148 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHC
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHH
Confidence 99999999999999998766 2222 248999999889999999999999988873 344333444433
No 157
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.095 Score=46.79 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=34.1
Q ss_pred CCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 047221 310 CDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFF 389 (509)
Q Consensus 310 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 389 (509)
|++++|+++++.+.+.+ +.|.+++.-=+...-..|+--+|++-+.+..+. +..|...|.-+-..|...|++++|.-.+
T Consensus 100 ~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 44444444444444433 333333433333333333333444433333333 2334444444444444444444444444
Q ss_pred HHHH
Q 047221 390 NQMV 393 (509)
Q Consensus 390 ~~m~ 393 (509)
+++.
T Consensus 178 EE~l 181 (289)
T KOG3060|consen 178 EELL 181 (289)
T ss_pred HHHH
Confidence 4444
No 158
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.19 Score=49.61 Aligned_cols=318 Identities=13% Similarity=0.035 Sum_probs=198.1
Q ss_pred HhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccC-HHHHHHHHHHHHhccCC
Q 047221 170 LNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLN-EKAFGFLPVLISSKALT 246 (509)
Q Consensus 170 ~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~ 246 (509)
..+.|+ .|+..|-....+.|. |.+.|+.=..+|+..|++++|++=-.+- ..+.|+ ...|.-.-.+....+ +
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~---nhvlySnrsaa~a~~~~~~~al~da~k~--~~l~p~w~kgy~r~Gaa~~~lg-~ 85 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPT---NHVLYSNRSAAYASLGSYEKALKDATKT--RRLNPDWAKGYSRKGAALFGLG-D 85 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCC---ccchhcchHHHHHHHhhHHHHHHHHHHH--HhcCCchhhHHHHhHHHHHhcc-c
Confidence 344554 799999998777774 6668999999999999999987655554 334455 446666655455444 4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH------HcCCC--------HHHHHHHHHHHHhcC--
Q 047221 247 KKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIK------KTERK--------VSYYNILIKEMCRRC-- 310 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~------~m~~~--------~~~~~~li~~~~~~g-- 310 (509)
+++|+.-|..-++.. +.+...++.|.+++.. +. .+.+.|. .+..+ ...|..++..+-+.-
T Consensus 86 ~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~--~~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKD-PSNKQLKTGLAQAYLE--DY-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHHhhcC-CchHHHHHhHHHhhhH--HH-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 999999998877643 4456667777777711 11 1112221 11111 123444444332211
Q ss_pred -----C---ccHHHHHHHH-----HHHcC-------CCCC----------------------hHHHHHHHHHHHhcCChH
Q 047221 311 -----D---FKGPRDLLVE-----MRQVG-------CEPI----------------------TLTYNYVLGVLCKNGQDA 348 (509)
Q Consensus 311 -----~---~~~A~~~~~~-----m~~~g-------~~p~----------------------~~t~~~li~~~~~~g~~~ 348 (509)
+ +..|.-.+.. +...| ..|. ..-...+.++..+..+++
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 1 1111111110 00111 1110 112356667777778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHHcCCHHHHH
Q 047221 349 DACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAA-------FIKGYFIFYRYEDAY 421 (509)
Q Consensus 349 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-------li~~~~~~g~~~~A~ 421 (509)
.|.+-+....+.. -+..-++..-.+|...|...++...-....+.|.. ...-|+. +-.+|.+.++.+.|.
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 8888888777753 35555666667888888888877777666655432 1222222 333666778889999
Q ss_pred HHHHHHHhCCCCCCHHH-------------------------HHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHH
Q 047221 422 KYVVLSADKYKSSSNML-------------------------YSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRR 476 (509)
Q Consensus 422 ~~~~~m~~~~~~p~~~~-------------------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 476 (509)
..|.+.......|+... --.=...+.+.|++..|++.|.+++... +-|...|..
T Consensus 319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsN 397 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSN 397 (539)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHH
Confidence 99988776655554421 0111355668899999999999999875 446778998
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 477 VLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 477 ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
-.-+|.+.|.+..|+.-.+.-.+..
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 8889999999999998777776663
No 159
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.11 Score=46.44 Aligned_cols=183 Identities=10% Similarity=-0.013 Sum_probs=107.2
Q ss_pred CCHHHHHHHHHHhhhC---C-CccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047221 209 DDYETMRQLLNDFNVY---Q-VCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEM 284 (509)
Q Consensus 209 g~~~~A~~l~~~m~~~---~-~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (509)
.+.++..+++.+|... | ..++..+..-.+-..+-..++.+.|...++.+...- +-+..+...-...+-..|.+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence 4567777777766533 3 455555444333333334455777777777766543 3333333222333444577777
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047221 285 AKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR 360 (509)
Q Consensus 285 A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 360 (509)
|.++++.+ +.|.+++---+...-..|+--+|++-+.+..+. +..|...|.-+-..|...|++++|.-.++++.-.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 77777776 345666666666666667766777777666654 4567777777777777777777777777777653
Q ss_pred CCCCCHHH-HHHHHHHHHHc---CChHHHHHHHHHHHHC
Q 047221 361 NCHPDAIT-YEIFIVYSCRV---GKFDVAFNFFNQMVKR 395 (509)
Q Consensus 361 g~~p~~~~-~~~li~~~~~~---g~~~~a~~~~~~m~~~ 395 (509)
.|.... +..+-..+.-. .+.+-|.+.|.+..+.
T Consensus 184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 344333 33333333222 2455566666666554
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.31 E-value=0.013 Score=46.87 Aligned_cols=98 Identities=15% Similarity=0.006 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGRNC--HPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL--QPRLATHAAFI 408 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li 408 (509)
++..+...+.+.|++++|.+.|..+.+..- ......+..+..++.+.|++++|...|+.+....- ......+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344445555556666666666665554311 01123344455555566666666666665554311 11133445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC
Q 047221 409 KGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
.++.+.|+.++|...++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 5555666666666666655554
No 161
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.26 E-value=0.073 Score=48.75 Aligned_cols=177 Identities=15% Similarity=0.136 Sum_probs=101.0
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHcCCCCChH-H---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047221 302 LIKEMCRRCDFKGPRDLLVEMRQVGCEPITL-T---YNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377 (509)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 377 (509)
....+.+.|++++|.+.|+++... .|+.. . .-.+..+|.+.+++++|...+++..+.-..-...-|...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 444455677777777777777764 23321 1 13455667777888888888877776522111223333333332
Q ss_pred H--cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 047221 378 R--VG---------------K---FDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437 (509)
Q Consensus 378 ~--~g---------------~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 437 (509)
. .+ + ..+|...|++++ .-|=...-..+|...+..+... .-..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~---la~~ 177 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR---LAKY 177 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH---HHHH
Confidence 1 11 1 123334444443 3333333344454444333321 0011
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 438 LYSLLASLHDKNNNPVMAKNVLSEMMKN--GLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 438 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
-+ .+..-|.+.|.+.-|+.-++.+++. +.+........+..+|.+.|..++|..+.+.+..
T Consensus 178 e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 178 EL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 11 4566678888888888888888874 4445566777888889999999998888776643
No 162
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.18 E-value=0.023 Score=47.28 Aligned_cols=93 Identities=6% Similarity=-0.099 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 047221 267 SGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLC 342 (509)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 342 (509)
...-.+..-+...|++++|+++|+-+ +.+..-|-.|..++-..|++++|++.|....... +-|...+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33445666667778888888888775 3456677777777777888888888888777665 456677777777788
Q ss_pred hcCChHHHHHHHHHHHhC
Q 047221 343 KNGQDADACELLEEMLGR 360 (509)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~ 360 (509)
..|+.+.|.+-|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 888888888888766554
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.17 E-value=0.087 Score=53.01 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH--------
Q 047221 366 AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM-------- 437 (509)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------- 437 (509)
..+...+..-+-+...+.-|-++|..|-+. ..+++.+...++|.+|+.+-+...+- .|++.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 334444444455566777788888877432 34677778888888888887654432 33332
Q ss_pred ---HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 438 ---LYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 438 ---~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
-|.---.+|.++|+-.+|.++++.+..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122223455566666666666666543
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.16 E-value=0.011 Score=50.97 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP--RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASL 445 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 445 (509)
.|..+...+...|++++|...|++.......+ ...++..+...|...|+.++|.+.++...... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34444455555566666666666554432111 12345555566666666666666665555432 1122334444444
Q ss_pred HH-------hCCChHHHHHHHHHH
Q 047221 446 HD-------KNNNPVMAKNVLSEM 462 (509)
Q Consensus 446 ~~-------~~g~~~~a~~~~~~m 462 (509)
+. ..|++++|+..+++.
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 44 566666555554443
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.14 E-value=0.013 Score=57.24 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=43.8
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 047221 377 CRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAK 456 (509)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 456 (509)
...|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..+++..+... .+...|..+..+|...|++++|+
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 34455555555555555432 22344455555555555555555555555544321 13334555555555555555555
Q ss_pred HHHHHHHH
Q 047221 457 NVLSEMMK 464 (509)
Q Consensus 457 ~~~~~m~~ 464 (509)
+.|++.++
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 55555554
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.13 E-value=0.04 Score=51.89 Aligned_cols=33 Identities=12% Similarity=0.017 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 047221 281 LYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMR 323 (509)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (509)
++++|..+|+ .....|-..|++++|.+.|.+..
T Consensus 30 ~~e~Aa~~y~----------~Aa~~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 30 DYEEAADLYE----------KAANCFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHHHHHHH----------HHHHHHHHTT-CHHHHHHHHHHH
T ss_pred CHHHHHHHHH----------HHHHHHHHHhccchhHHHHHHHH
Confidence 6677766554 45667777788888877777654
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.12 E-value=0.00084 Score=50.24 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=43.5
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 047221 379 VGKFDVAFNFFNQMVKRGLQ-PRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKN 457 (509)
Q Consensus 379 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 457 (509)
.|+++.|+.+++++.+..-. ++...+-.+..+|.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666677777766655321 1333444466667777777777777765 21111 122233344566667777777777
Q ss_pred HHHH
Q 047221 458 VLSE 461 (509)
Q Consensus 458 ~~~~ 461 (509)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.11 E-value=0.032 Score=48.24 Aligned_cols=129 Identities=16% Similarity=0.109 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD--AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIK 409 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 409 (509)
..+..+...|...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455556666666777777777766665422221 2455566666666666777766666666542 123444555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 047221 410 GYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQ 486 (509)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 486 (509)
+|...|+...+..-++... ..+++|++++++... ..|+ .|..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~--~~p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIR--LAPN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHh--hCch--hHHHHHHHHHhcCc
Confidence 5655555444443322211 114566666666654 2233 35555555554443
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.09 E-value=0.027 Score=48.62 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047221 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI--TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFI 373 (509)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 373 (509)
...+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 33445555555556666666666665554321211 2455566666666666666666666665541 12344455555
Q ss_pred HHHHHcCChHH
Q 047221 374 VYSCRVGKFDV 384 (509)
Q Consensus 374 ~~~~~~g~~~~ 384 (509)
..+...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 55555555433
No 170
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.02 E-value=0.18 Score=51.59 Aligned_cols=135 Identities=16% Similarity=0.041 Sum_probs=66.4
Q ss_pred cCCCHHHHHHHHHHHHhcCC-----ccHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcC--------ChHHHHHHHHHH
Q 047221 292 TERKVSYYNILIKEMCRRCD-----FKGPRDLLVEMRQVGCEPI-TLTYNYVLGVLCKNG--------QDADACELLEEM 357 (509)
Q Consensus 292 m~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g--------~~~~a~~~~~~m 357 (509)
.+.|...|...+.+.....+ .+.|.++|++..+. .|| ...|..+..+|.... +++.+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 35666777777766443222 55677777777765 444 233333322222111 112222222222
Q ss_pred HhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 358 LGR-NCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 358 ~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
... ....+...|.++.-.+...|++++|...+++..+.+ |+...|..+...|...|+.++|.+.+++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 221 122233445554444444566666666666655543 45555666666666666666666666555443
No 171
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.18 Score=51.29 Aligned_cols=194 Identities=10% Similarity=0.032 Sum_probs=106.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhC-CCcc--------CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVY-QVCL--------NEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVS 267 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p--------~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 267 (509)
.|..+.......-.++.|+..|-+.... |++. +...-..-+.+++ |.+++|++++-+|.+..
T Consensus 694 LWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~---g~feeaek~yld~drrD------ 764 (1189)
T KOG2041|consen 694 LWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFY---GEFEEAEKLYLDADRRD------ 764 (1189)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhh---cchhHhhhhhhccchhh------
Confidence 8988888877777788888777665332 2211 1111122233232 45888888888777643
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHcCCC------HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 047221 268 GVRALIEMFSVLGLYEMAKYVIKKTERK------VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVL 341 (509)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 341 (509)
..|.++.+.|++-...++++.-..| ..+|+.+...++....|++|.+.|..-... ...+.++
T Consensus 765 ---LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecl 832 (1189)
T KOG2041|consen 765 ---LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECL 832 (1189)
T ss_pred ---hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHH
Confidence 4567777888888887777663211 456777777777777777777766543321 1234444
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047221 342 CKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 421 (509)
.+..++++-+.+-..+.+ |....-.|..++...|.-++|.+.|-+- + .| -+.+++|...++|.+|.
T Consensus 833 y~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHH
Confidence 444444443333332222 3334444555555556655555544221 1 11 12344455555555555
Q ss_pred HHHH
Q 047221 422 KYVV 425 (509)
Q Consensus 422 ~~~~ 425 (509)
++-+
T Consensus 899 elaq 902 (1189)
T KOG2041|consen 899 ELAQ 902 (1189)
T ss_pred HHHH
Confidence 5543
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.98 E-value=0.085 Score=53.96 Aligned_cols=143 Identities=16% Similarity=0.137 Sum_probs=92.8
Q ss_pred CCCCChHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC--------ChHHHHHHHHH
Q 047221 326 GCEPITLTYNYVLGVLCKNG-----QDADACELLEEMLGRNCHPD-AITYEIFIVYSCRVG--------KFDVAFNFFNQ 391 (509)
Q Consensus 326 g~~p~~~t~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g--------~~~~a~~~~~~ 391 (509)
+...|...|...+.+..... +.+.|..+|++..+. .|+ ...|..+..++.... ++..+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44677788888888755432 266788888888876 454 445555444443221 12333333333
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcC
Q 047221 392 MVKR-GLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN 470 (509)
Q Consensus 392 m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 470 (509)
.... ....+...|.++.-.+...|++++|...+++..+.. |+...|..+...+...|+.++|.+.+++... +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 3222 123345667777666667788888888888887775 5677888888888888888888888888776 4455
Q ss_pred HHHH
Q 047221 471 VSVY 474 (509)
Q Consensus 471 ~~t~ 474 (509)
..||
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 5554
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.94 E-value=0.026 Score=48.54 Aligned_cols=94 Identities=14% Similarity=0.011 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047221 331 TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHP--DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFI 408 (509)
Q Consensus 331 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 408 (509)
...|..+...+...|++++|...|++.......+ ...++..+-..+.+.|+.++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555566666677777777777665442121 12356666667777777777777777666542 22344455555
Q ss_pred HHHH-------HcCCHHHHHHHHH
Q 047221 409 KGYF-------IFYRYEDAYKYVV 425 (509)
Q Consensus 409 ~~~~-------~~g~~~~A~~~~~ 425 (509)
..|. ..|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5555 5555554444443
No 174
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.91 E-value=0.06 Score=43.04 Aligned_cols=104 Identities=17% Similarity=0.100 Sum_probs=57.0
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHH
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPI--TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD----AITYEIFIVYS 376 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~ 376 (509)
..++-..|+.++|+.+|++....|.... ...+-.+.+.+...|++++|..++++..... |+ ......+..++
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence 3455556777777777777766665443 2344555666667777777777777666541 22 11111122345
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047221 377 CRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412 (509)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (509)
...|+.++|...+-..... +...|.--|..|+
T Consensus 86 ~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAE----TLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 5667777776666554432 3334554454443
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.89 E-value=0.29 Score=44.81 Aligned_cols=174 Identities=10% Similarity=-0.056 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc---CC-CHHH---HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKT---ER-KVSY---YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK 343 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m---~~-~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 343 (509)
.....+.+.|++++|...|+++ -| .... .-.+..+|.+.+++++|...|++..+.--.-...-|...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3444555677888888888776 12 2222 234556777888888888888887765212122233333333321
Q ss_pred --cC---------------C---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047221 344 --NG---------------Q---DADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT 403 (509)
Q Consensus 344 --~g---------------~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 403 (509)
.+ + ..+|.+.|+++ |.-|=...-..+|...+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l---------------i~~yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL---------------VRGYPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHH---------------HHHCcCChhHHHHHHHHHHHHHH----HHHH
Confidence 11 1 12333444444 33343334455555544444322 0111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047221 404 HAAFIKGYFIFYRYEDAYKYVVLSADK--YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 463 (509)
--.+..-|.+.|.+..|..-++.+.+. +..........++.+|...|..++|.++...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 124566688888888888888888765 334445566778888888888888887766543
No 176
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.89 E-value=0.13 Score=54.39 Aligned_cols=209 Identities=11% Similarity=-0.000 Sum_probs=130.1
Q ss_pred HHHHHHHHHH-cCCC---HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047221 282 YEMAKYVIKK-TERK---VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEM 357 (509)
Q Consensus 282 ~~~A~~~~~~-m~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 357 (509)
...|...|-+ +.-| ...|..|...|+...+...|.+.|+...+.. ..|...+....+.|+...+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4555555433 2222 5678888888888888888888888887654 456677788888888888998888883222
Q ss_pred HhCCCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047221 358 LGRNCHPDAITYEI--FIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSS 435 (509)
Q Consensus 358 ~~~g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 435 (509)
-+. -+.-...+|. .--.|.+.++..+|..-|+...+.. +-|...|..+.++|..+|++..|.++|.+..... |+
T Consensus 553 ~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~ 628 (1238)
T KOG1127|consen 553 AQK-APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PL 628 (1238)
T ss_pred hhh-chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cH
Confidence 221 1111112222 2234566778888888888777653 3367788889999999999999999997766543 32
Q ss_pred HHHHHHHH--HHHHhCCChHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047221 436 NMLYSLLA--SLHDKNNNPVMAKNVLSEMMKN------GLRPNVSVYRRVLKHLHTSHQEHMAKCLSSR 496 (509)
Q Consensus 436 ~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 496 (509)
. +|...- ..-+..|.+++|+..+...... +..--..++..+...+.-.|-..+|...+++
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~ek 696 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEK 696 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 2 233222 2335678888888888776542 1112223444444444444554455444444
No 177
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.89 E-value=0.024 Score=55.27 Aligned_cols=80 Identities=8% Similarity=-0.119 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 047221 245 LTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLV 320 (509)
Q Consensus 245 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (509)
+++++|...+++..+.. +.+...|..+..+|.+.|++++|...+++. +.+...|..+..+|...|++++|+..|+
T Consensus 16 ~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 16 DDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 34666666666665543 234455555566666666666666665553 2345555555566666666666666666
Q ss_pred HHHHc
Q 047221 321 EMRQV 325 (509)
Q Consensus 321 ~m~~~ 325 (509)
+..+.
T Consensus 95 ~al~l 99 (356)
T PLN03088 95 KGASL 99 (356)
T ss_pred HHHHh
Confidence 55543
No 178
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.84 E-value=0.14 Score=45.55 Aligned_cols=181 Identities=12% Similarity=0.033 Sum_probs=88.9
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047221 302 LIKEMCRRCDFKGPRDLLVEMRQVGC--EPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRV 379 (509)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 379 (509)
....+.+.|++++|.+.|+++...-- +--....-.++.++.+.|++++|...+++..+.-..-...-+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 34445566777777777777765411 1113344556666777777777777777766541111112222222232221
Q ss_pred CChHHHH---HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHH
Q 047221 380 GKFDVAF---NFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAK 456 (509)
Q Consensus 380 g~~~~a~---~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 456 (509)
....... .=-....+ -...+..+|.-|=......+|...+..+.+.- -.. --.+..-|.+.|.+..|.
T Consensus 91 ~~~~~~~~~~~D~~~~~~-----A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~l---a~~-e~~ia~~Y~~~~~y~aA~ 161 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRK-----AIEEFEELIKRYPNSEYAEEAKKRLAELRNRL---AEH-ELYIARFYYKRGKYKAAI 161 (203)
T ss_dssp HHHHHHH-TT---HHHHH-----HHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHH---HHH-HHHHHHHHHCTT-HHHHH
T ss_pred HhCccchhcccChHHHHH-----HHHHHHHHHHHCcCchHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHcccHHHHH
Confidence 1111110 00000000 02234555555555666666665555444320 111 113567778888888888
Q ss_pred HHHHHHHHC--CCCcCHHHHHHHHHHHHhcCCHHHHH
Q 047221 457 NVLSEMMKN--GLRPNVSVYRRVLKHLHTSHQEHMAK 491 (509)
Q Consensus 457 ~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~ 491 (509)
.-++.+++. +..-.......++.+|.+.|..+.+.
T Consensus 162 ~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 162 IRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888888774 22223345677777888888877544
No 179
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.83 E-value=0.48 Score=45.21 Aligned_cols=103 Identities=14% Similarity=-0.012 Sum_probs=50.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 047221 371 IFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNN 450 (509)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 450 (509)
.-|.-+...|+...|.++-.+. + .|+..-|-.-|.+|+..|+|++-.++... .- .++-|..++.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCC
Confidence 3344444555555555554433 1 24555555556666666666555544321 11 1234555555555666
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 047221 451 NPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCL 493 (509)
Q Consensus 451 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 493 (509)
+..+|..+..++ ++..-+..|.+.|++.+|.+.
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 655555555541 112334445555555555444
No 180
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.69 E-value=0.14 Score=42.58 Aligned_cols=88 Identities=11% Similarity=-0.065 Sum_probs=49.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 047221 375 YSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVM 454 (509)
Q Consensus 375 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 454 (509)
-+...|++++|..+|+.+..-. .-+..-|-.|-.++...|++++|...|.......+ -|...+-.+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 3445566666666666655442 11344455566666666666666666666555442 344445556666666666666
Q ss_pred HHHHHHHHHH
Q 047221 455 AKNVLSEMMK 464 (509)
Q Consensus 455 a~~~~~~m~~ 464 (509)
|.+.|+..+.
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.61 E-value=0.0061 Score=43.27 Aligned_cols=50 Identities=26% Similarity=0.240 Sum_probs=20.8
Q ss_pred cCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047221 309 RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLG 359 (509)
Q Consensus 309 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 359 (509)
.|++++|+++|+++.+.. +-+...+..+..+|.+.|++++|.++++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444332 12333333444444444444444444444443
No 182
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.60 E-value=0.0075 Score=42.80 Aligned_cols=52 Identities=27% Similarity=0.414 Sum_probs=26.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047221 343 KNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
+.|++++|.++|+.+.+.. +-+...+..+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455555555555555441 224444445555555555555555555555544
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.57 E-value=0.4 Score=40.84 Aligned_cols=101 Identities=15% Similarity=0.108 Sum_probs=52.2
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHH
Q 047221 328 EPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR---GLQPRLATH 404 (509)
Q Consensus 328 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~ 404 (509)
-|+...--.|..+....|+..+|...|.+....-..-|....-.+..+....+++..|...++++.+. +..||. .
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--H 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--h
Confidence 44554445555555566666666666655554433344445555555555555666665555555443 222332 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 405 AAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
-.+...|...|+.++|+.-|+.....
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 23444555555555555555555444
No 184
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.55 E-value=0.25 Score=39.49 Aligned_cols=138 Identities=16% Similarity=0.127 Sum_probs=79.3
Q ss_pred ccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047221 207 RLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAK 286 (509)
Q Consensus 207 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 286 (509)
-.|.+++..++..+..... +..-+|.+|.-... ..++..+++.+...|---|.. .||++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiD----aa~C~yvv~~LdsIGkiFDis----------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIID----AADCDYVVETLDSIGKIFDIS----------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHH----H--HHHHHHHHHHHGGGS-GG----------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---Cccccceeeeecch----hhchhHHHHHHHHHhhhcCch----------hhcchHHHH
Confidence 3567777777777765542 44555555542322 223444555555555444443 356666666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047221 287 YVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNC 362 (509)
Q Consensus 287 ~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 362 (509)
..+-.+..+....+..+....+.|+-+.-.+++.++.+.+ +++....-.+..+|.+.|+..++.+++.+..+.|+
T Consensus 77 ~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 77 ECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 6666665566666777788888888888888888777543 67777777888888888888888888888877765
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.53 E-value=0.15 Score=40.74 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=46.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhC
Q 047221 374 VYSCRVGKFDVAFNFFNQMVKRGLQPR--LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKS--SSNMLYSLLASLHDKN 449 (509)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~ 449 (509)
.++-..|+.++|+.+|++....|.... ...+-.+-..|...|++++|..+|++....... -+......+..++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 344455666666666666666654443 223444555566666666666666655543211 0111222233355566
Q ss_pred CChHHHHHHHHHH
Q 047221 450 NNPVMAKNVLSEM 462 (509)
Q Consensus 450 g~~~~a~~~~~~m 462 (509)
|+.++|++.+-..
T Consensus 89 gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 89 GRPKEALEWLLEA 101 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 6666666665544
No 186
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.50 E-value=0.041 Score=44.45 Aligned_cols=50 Identities=16% Similarity=0.038 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 047221 397 LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK-YKSSSNMLYSLLASLH 446 (509)
Q Consensus 397 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~ 446 (509)
..|+..+..+++.+|+..|++..|+++.+...+. ++..+..+|..|++-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4455555555555555555555555555544433 3444444555555433
No 187
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.49 E-value=0.05 Score=43.92 Aligned_cols=83 Identities=7% Similarity=0.039 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHH---------------HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047221 331 TLTYNYVLGVLCKNGQDADACELLEEM---------------LGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 331 ~~t~~~li~~~~~~g~~~~a~~~~~~m---------------~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
..++.++|-++++.|+++...++++.. ......|+..+..+++.+|+.+|++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344555555555555555555554432 11235678888888888888888888888888876654
Q ss_pred -CCCCCHHHHHHHHHHHHH
Q 047221 396 -GLQPRLATHAAFIKGYFI 413 (509)
Q Consensus 396 -g~~p~~~~~~~li~~~~~ 413 (509)
+++.+..+|..|++-...
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 677777888888775443
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.16 Score=45.63 Aligned_cols=161 Identities=9% Similarity=0.040 Sum_probs=90.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc-C----------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHH
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT-E----------RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYV 337 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m-~----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 337 (509)
++.|+..+.-..-++.-...++.- . +-....+.++....-.|.+.-.+.++.+..+..-+-+..-...|
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 556666665555555544444432 1 11233455666666666676777777777765545556666667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047221 338 LGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFI-----VYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412 (509)
Q Consensus 338 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (509)
++.-.+.|+.+.|...|++..+..-..|..+.+.++ ..|.-.+++..|...+.+..... .-|+...|.=.-+..
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHH
Confidence 777777777777777777666543333333333332 23444566666666676666553 223333333222333
Q ss_pred HcCCHHHHHHHHHHHHhC
Q 047221 413 IFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~ 430 (509)
-.|+..+|.+..+.|.+.
T Consensus 298 Ylg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 346777777777777665
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.11 Score=46.56 Aligned_cols=133 Identities=8% Similarity=-0.049 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIK-- 409 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~-- 409 (509)
...+.++......|.+.-....+.+..+..-+-+......|.+.-.+.||.+.|...|+...+..-+.|..+.+.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 345667777777888888889999999876666788888888988999999999999998877655555555555544
Q ss_pred ---HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 410 ---GYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 410 ---~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
.|.-.+++..|...+.++...+- .+....|.-.-+..-.|+..+|++.++.|.+.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45567888889999988776642 24444444444445578999999999999885
No 190
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.43 E-value=0.016 Score=40.62 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=9.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Q 047221 439 YSLLASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 439 ~~~li~~~~~~g~~~~a~~~~~~m 462 (509)
+..+...+...|++++|..+|+++
T Consensus 34 ~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 34 WYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333444444444444433
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.43 E-value=0.91 Score=43.34 Aligned_cols=112 Identities=17% Similarity=0.113 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047221 331 TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410 (509)
Q Consensus 331 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (509)
..+.+..|.-+...|+...|.++-.+.. .||..-|-..|.+++..++|++-..+-.. . -.++-|-..+.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 3456666777888899888888866552 46888899999999999999888776432 1 134678889999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 047221 411 YFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 462 (509)
|.+.|+..+|..+..++ + +.--+..|.+.|++.+|.+.--+.
T Consensus 247 ~~~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 99999999999888662 1 234677888999999998775544
No 192
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.42 E-value=0.015 Score=40.77 Aligned_cols=61 Identities=15% Similarity=0.034 Sum_probs=50.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
+...+.+.|++++|++.|++.++.. +-+...+..+..++...|++++|..++++..+..+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 4567889999999999999999864 225667888888999999999999999999876553
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.41 E-value=0.082 Score=48.91 Aligned_cols=97 Identities=16% Similarity=0.163 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHH
Q 047221 366 AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR----LATHAAFIKGYFIFYRYEDAYKYVVLSADKYK--SSSNMLY 439 (509)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~ 439 (509)
...|...+..+.+.|++++|...|+.+.+. .|+ ...+-.+..+|...|++++|...|+.+.+... ......+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 344666665556678888888888887765 222 24556677777888888888888887775421 1123344
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 440 SLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 440 ~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
-.+...+...|+.++|.++|++..+
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666677888888888877766
No 194
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.41 E-value=0.081 Score=44.19 Aligned_cols=69 Identities=9% Similarity=-0.008 Sum_probs=32.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 047221 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSAD-----KYKSSSNML 438 (509)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 438 (509)
...++..+...|++++|..+.+.+.... +.|...|..+|.+|...|+...|.++|+.+.. .|+.|...+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3344455555556666666655555442 33455555566666666666666555554432 255555543
No 195
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.37 E-value=0.34 Score=43.04 Aligned_cols=172 Identities=14% Similarity=0.028 Sum_probs=78.8
Q ss_pred HHHHHhcCCHHHHHHHHHHcC---CC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHh
Q 047221 273 IEMFSVLGLYEMAKYVIKKTE---RK----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI--TLTYNYVLGVLCK 343 (509)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~---~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~ 343 (509)
...+...|++++|...|+.+. |+ ..+.-.++.++.+.|++++|...++++.+. -|+ ..-+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 344455666666666666651 11 334445666677777777777777776654 222 1222222222211
Q ss_pred cCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047221 344 NGQDADACELLEEMLGRNCHP---DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDA 420 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 420 (509)
-....... ........ -...+..+|.-|=......+|...+..+.+. =...--.+..-|.+.|.+..|
T Consensus 90 ~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 90 YKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHH
T ss_pred HHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHH
Confidence 11111110 00000000 0123444555555555556665555544322 011112255667777777777
Q ss_pred HHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCChHHH
Q 047221 421 YKYVVLSADKYK--SSSNMLYSLLASLHDKNNNPVMA 455 (509)
Q Consensus 421 ~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a 455 (509)
..-++.+.+.-. .........++.+|.+.|..+.+
T Consensus 161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777766521 11223455667777777766643
No 196
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.30 E-value=0.52 Score=51.20 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=10.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 047221 407 FIKGYFIFYRYEDAYKYVVLS 427 (509)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m 427 (509)
.+.+|..+|+|.+|+.+..+|
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhh
Confidence 344455555555555554444
No 197
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.29 E-value=0.063 Score=49.14 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=72.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHH
Q 047221 341 LCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR-LATHAAFIKGYFIFYRYED 419 (509)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~ 419 (509)
..+.+++++|+..|.+.++. .+-|.+-|..=..+|.+.|.++.|++--+..+.- .|. ..+|..|-.+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 55778889999988888876 2345666777788888999888888877766654 232 4678888888888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH
Q 047221 420 AYKYVVLSADKYKSSSNMLYSLLA 443 (509)
Q Consensus 420 A~~~~~~m~~~~~~p~~~~~~~li 443 (509)
|.+.|++..+ +.|+..+|-.=+
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHH
Confidence 8888877655 456666655433
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.25 E-value=0.02 Score=40.72 Aligned_cols=61 Identities=10% Similarity=-0.044 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Q 047221 437 MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP-NVSVYRRVLKHLHTSH-QEHMAKCLSSRYSS 499 (509)
Q Consensus 437 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~ 499 (509)
..|..+...+...|++++|+..|++.++. .| +...|..+..++.+.| ++++|++.+++..+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 44555555555566666666666655553 23 3334555555555555 45666665555544
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.15 E-value=0.1 Score=48.27 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHcCCCCCh----HHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 047221 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPIT----LTYNYVLGVLCKNGQDADACELLEEMLGRN--CHPDAITYEIFI 373 (509)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li 373 (509)
+..+..+.+.|++++|+..|+.+.+. .|+. ..+-.+..+|...|++++|...|+.+.+.- .+.....+-.+.
T Consensus 147 ~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 147 NAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 33333333445555555555555443 2222 233444444555555555555555554330 011122222233
Q ss_pred HHHHHcCChHHHHHHHHHHHHC
Q 047221 374 VYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
..+...|+.++|..+|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 3344445555555555544443
No 200
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.13 E-value=0.033 Score=46.63 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEM 322 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (509)
...++..+...|+++.|..+.+.+ +-|...|..+|.+|...|+..+|.+.|+++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444444444444444444443 233444444444444444444444444443
No 201
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.10 E-value=0.027 Score=39.98 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHH
Q 047221 298 YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG-QDADACELLEE 356 (509)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~ 356 (509)
+|..+...+.+.|++++|+..|.+..+.. +-+...|..+..+|.+.| ++++|.+.++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34444444444444444444444444332 222333334444444444 34444444433
No 202
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.98 E-value=1.5 Score=42.39 Aligned_cols=163 Identities=13% Similarity=0.045 Sum_probs=87.0
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHcC---CCCChHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047221 301 ILIKEMCRRCDFKGPRDLLVEMRQVG---CEPITLTYNYVLGVLCK---NGQDADACELLEEMLGRNCHPDAITYEIFIV 374 (509)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 374 (509)
.++-.|....+++..+++++.|.... +.-....-....-++-+ .|+.++|++++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445888888888888888888641 11111111222334445 7888888888888666656677777777766
Q ss_pred HHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HH---HHHHHH---H-HHHhCCC---CC
Q 047221 375 YSCRV---------GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR-YE---DAYKYV---V-LSADKYK---SS 434 (509)
Q Consensus 375 ~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~---~A~~~~---~-~m~~~~~---~p 434 (509)
.|-.. ...++|...|.+--+. .||..+--.+...+...|. .+ +..++- . .+.++|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 65321 1355566666654433 2443332222222223332 21 222322 1 1112222 12
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 435 SNMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
+--.+..++.++.-.|+.++|.+..++|...
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3334556666666677777777777777654
No 203
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.94 E-value=0.055 Score=48.93 Aligned_cols=96 Identities=19% Similarity=0.141 Sum_probs=68.7
Q ss_pred HHHHHHc---CCCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC------------
Q 047221 286 KYVIKKT---ERKVSYYNILIKEMCRR-----CDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG------------ 345 (509)
Q Consensus 286 ~~~~~~m---~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g------------ 345 (509)
+..|... ++|..+|-+++..|... +.++-....++.|.+-|+..|..+|+.||+.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 3445555 35667777777776654 445556666778888888888888888887765432
Q ss_pred ----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047221 346 ----QDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK 381 (509)
Q Consensus 346 ----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 381 (509)
+-+-+.+++++|...|+.||-.+-..|+.++.+.+-
T Consensus 134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 224578888888888888888888888888877664
No 204
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.90 E-value=0.3 Score=44.84 Aligned_cols=92 Identities=12% Similarity=0.008 Sum_probs=65.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---C-CCHHHHHHHHHHHHhcCCccHHHHHH
Q 047221 244 ALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT---E-RKVSYYNILIKEMCRRCDFKGPRDLL 319 (509)
Q Consensus 244 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~-~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (509)
.+++++|+..|...++.. +-|.+-|..-..+|.+.|.++.|++-.+.. . .-..+|..|..+|...|++++|++.|
T Consensus 94 ~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 455888888888877754 445666777888888888888887666553 2 23567888888888888888888888
Q ss_pred HHHHHcCCCCChHHHHHHH
Q 047221 320 VEMRQVGCEPITLTYNYVL 338 (509)
Q Consensus 320 ~~m~~~g~~p~~~t~~~li 338 (509)
++..+ +.|+-.+|-.=+
T Consensus 173 kKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 173 KKALE--LDPDNESYKSNL 189 (304)
T ss_pred Hhhhc--cCCCcHHHHHHH
Confidence 77775 367766665443
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=2.7 Score=43.65 Aligned_cols=110 Identities=12% Similarity=0.017 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047221 367 ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLH 446 (509)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 446 (509)
-+.+--+.-+...|+..+|.++-.+.. -||...|--=+.+++..++|++-+++-+.++. ..-|.-...+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHH
Confidence 344445556667788888877766653 45777787778888888998888887765542 23366678888
Q ss_pred HhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047221 447 DKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSS 495 (509)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 495 (509)
.+.|+.+||.+++.+... .. -.+.+|.+.|++.+|.++--
T Consensus 755 ~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 899999999998876432 11 45678888888888877643
No 206
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.80 E-value=0.13 Score=49.14 Aligned_cols=133 Identities=10% Similarity=0.018 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCH
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEML----GRNCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVK----RG-LQPRL 401 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~ 401 (509)
..|..|-+.|.-.|+++.|....+.-. +.|-.. .-..+..+-.++.-.|+++.|.+.|+.-.. .| .....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345556666666778888876665422 223222 223566777778888888888887775432 22 12234
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 402 ATHAAFIKGYFIFYRYEDAYKYVVLSADK-----YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
.++-+|-.+|--..++++|+.++.+-..- +..-....+.+|..+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45666777777777788887776543211 1122345666788888888888888877665543
No 207
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.79 E-value=0.1 Score=47.20 Aligned_cols=89 Identities=9% Similarity=0.007 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------CHHHHH
Q 047221 363 HPDAITYEIFIVYSCRV-----GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY----------------RYEDAY 421 (509)
Q Consensus 363 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------~~~~A~ 421 (509)
.-|-.+|-+.+..+... +.++-....++.|.+-|+.-|..+|+.|+..+-+.. +-+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44777888888777643 667777888889999999999999999998865432 112355
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 047221 422 KYVVLSADKYKSSSNMLYSLLASLHDKNNN 451 (509)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 451 (509)
+++++|...|+.||..+-..|++++.+.+.
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 556666666666666655556665555544
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.67 E-value=0.39 Score=46.55 Aligned_cols=125 Identities=16% Similarity=0.081 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-c---CCCHHHHHHHHHHH
Q 047221 232 AFGFLPVLISSKALTKKGIWRVVEVLNQVG-GSCLVSGVRALIEMFSVLGLYEMAKYVIKK-T---ERKVSYYNILIKEM 306 (509)
Q Consensus 232 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m---~~~~~~~~~li~~~ 306 (509)
.|...|.......| ++.|..+|-++.+.| ..+++..++++|.-|+ .|+...|..+|+. | +.+..--+..+.-+
T Consensus 399 v~C~~~N~v~r~~G-l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRG-LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34444443333444 455555555554444 3344444444444443 2444444444443 1 12222223334444
Q ss_pred HhcCCccHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047221 307 CRRCDFKGPRDLLVEMRQVGCEPI--TLTYNYVLGVLCKNGQDADACELLEEMLG 359 (509)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 359 (509)
...++-+.|..+|+.-... +.-+ ...|..+|+-=..-|++..|..+=++|.+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 4444444455555422211 0111 23445555544455555555554444444
No 209
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.53 E-value=0.63 Score=47.19 Aligned_cols=210 Identities=10% Similarity=0.038 Sum_probs=116.7
Q ss_pred HHHHHHHHhccCCH--HHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047221 198 CSLVIDNCGRLDDY--ETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEM 275 (509)
Q Consensus 198 ~~~li~~~~~~g~~--~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 275 (509)
++.-=.+|.+.++. -+...-+++|.++|-.|+......... -.|.+.+|.++|.+- |.. |-.+.+
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~A----y~gKF~EAAklFk~~---G~e------nRAlEm 667 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVFA----YQGKFHEAAKLFKRS---GHE------NRALEM 667 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHHH----hhhhHHHHHHHHHHc---Cch------hhHHHH
Confidence 34444455555543 333444567777787787765544433 234477777777542 322 234445
Q ss_pred HHhcCCHHHHHHHHHHcC----------CCHHHH-----HHHHHHHHhcCCccHHHHHHHH------HHHcCC---CCCh
Q 047221 276 FSVLGLYEMAKYVIKKTE----------RKVSYY-----NILIKEMCRRCDFKGPRDLLVE------MRQVGC---EPIT 331 (509)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~----------~~~~~~-----~~li~~~~~~g~~~~A~~~~~~------m~~~g~---~p~~ 331 (509)
|.....+|.|.+++..-. +-..++ .+....+...|+.++|..+.-+ +.+-+- ..+.
T Consensus 668 yTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~er 747 (1081)
T KOG1538|consen 668 YTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAER 747 (1081)
T ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhh
Confidence 555555555555443210 001111 1233445556666666665321 112121 2334
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--------
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT-------- 403 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-------- 403 (509)
.+...+..-+.+...+..|-++|..|-+. ..++......++|++|..+-+...+- .||+..
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 44545544455666777888888877543 45677788889999998887765432 344322
Q ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 404 ---HAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 404 ---~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
+--.-.+|-+.|+-.+|.++++++....
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 3334457888888888888888876543
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.53 E-value=0.063 Score=39.20 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047221 403 THAAFIKGYFIFYRYEDAYKYVVLSA 428 (509)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (509)
+++.+...|...|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445555555555555555554443
No 211
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.50 E-value=2.7 Score=41.05 Aligned_cols=148 Identities=17% Similarity=0.257 Sum_probs=107.4
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HH
Q 047221 294 RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVG-CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITY-EI 371 (509)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~ 371 (509)
.=..+|...|+...+..-++.|..+|-+.++.| +.+++..++++|.-++ .|+..-|.++|+.-... -||...| +-
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHH
Confidence 345678889998888888999999999999998 6788899999998554 57788899999865443 3444443 44
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047221 372 FIVYSCRVGKFDVAFNFFNQMVKRGLQPR--LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHD 447 (509)
Q Consensus 372 li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 447 (509)
.+.-+...++-+.|..+|+..+.+ +.-+ ...|..+|+-=.+-|++..|..+=++|.+. .|-..+.....+-|+
T Consensus 472 yl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 566677889999999999965543 2223 467899999888899998888877777654 333333334444443
No 212
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.78 Score=42.36 Aligned_cols=101 Identities=9% Similarity=0.026 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc---CChHHHHHHHHHHHhCCCCCCHHHH
Q 047221 293 ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN---GQDADACELLEEMLGRNCHPDAITY 369 (509)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~ 369 (509)
+.|...|-.|...|.+.|+.+.|..-|....+.- .++...+..+..++... ..-.++..+|+++.+.. +-|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 4556666666666666666666666666555432 23333333333333222 12345666666666542 2234444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHC
Q 047221 370 EIFIVYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 370 ~~li~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
.-|-..+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 44445566666666666666666654
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.49 E-value=0.11 Score=37.28 Aligned_cols=54 Identities=15% Similarity=0.016 Sum_probs=24.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 410 GYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
.|.+.+++++|.++++.+...+.. +...|......+.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555555555544443211 333344444444455555555555554443
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.46 E-value=0.073 Score=38.20 Aligned_cols=61 Identities=13% Similarity=0.007 Sum_probs=50.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047221 443 ASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGS 504 (509)
Q Consensus 443 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 504 (509)
-..|.+.+++++|+++++.+...+ +.+...+......+.+.|++++|.+.+++..+.++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 356789999999999999999852 2255567777888899999999999999999887754
No 215
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.46 E-value=1.2 Score=36.72 Aligned_cols=126 Identities=14% Similarity=0.056 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047221 335 NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF 414 (509)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 414 (509)
..++..+...+........++.+...+. .+...++.+|..|++.+. .+..+.++. . .+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 3455555566666667777766666652 455666777777766532 333333331 1 1222334456666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 047221 415 YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKN-NNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHT 483 (509)
Q Consensus 415 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 483 (509)
+.++++..++.++.. |.-.+..+... ++.+.|.+++++- -+...|..++..+..
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 666666666655422 11122222233 6666666666541 244566666655543
No 216
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.43 E-value=0.69 Score=46.33 Aligned_cols=155 Identities=12% Similarity=0.111 Sum_probs=86.0
Q ss_pred HhccCCHHHHHHHHH--HhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047221 205 CGRLDDYETMRQLLN--DFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLY 282 (509)
Q Consensus 205 ~~~~g~~~~A~~l~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (509)
..-.++++++.++.+ ++. ..+ ...-.+.++. ++.+.|..+.|+++..+-. .-.+...++|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll-~~i--~~~~~~~i~~-fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLL-PNI--PKDQGQSIAR-FLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTG-GG----HHHHHHHHH-HHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhc-ccC--ChhHHHHHHH-HHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 344567777655554 111 111 1333444444 7777776777777654422 334555677777
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047221 283 EMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNC 362 (509)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 362 (509)
+.|.++-++.+ +...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+...++.+....+|-
T Consensus 335 ~~A~~~a~~~~-~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 335 DIALEIAKELD-DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHHHHCCCCS-THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhcC-cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 77777665554 556777777777777777777777766552 45566667777777777676666665542
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 047221 363 HPDAITYEIFIVYSCRVGKFDVAFNFFNQ 391 (509)
Q Consensus 363 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 391 (509)
+|....++...|+.++..+++.+
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44555555566777766666544
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.38 E-value=0.048 Score=39.86 Aligned_cols=26 Identities=15% Similarity=0.516 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
+|+.+-..|...|++++|+..|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444445555555555555554443
No 218
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.36 E-value=1.9 Score=38.52 Aligned_cols=215 Identities=10% Similarity=0.010 Sum_probs=122.0
Q ss_pred cCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 047221 187 IMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLV 266 (509)
Q Consensus 187 ~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 266 (509)
..|+...-...|.--..+|....+++.|...+.+..+ +..-+...|+.. ...+.|.-+.++|.+.. --+
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhAA--------KayEqaamLake~~kls--Evv 91 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHAA--------KAYEQAAMLAKELSKLS--EVV 91 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHHH--------HHHHHHHHHHHHHHHhH--HHH
Confidence 3466555556777778888899999999888877642 223333344332 23677777777776532 223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCC--CCC---hHHHHHHHHHH
Q 047221 267 SGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC--EPI---TLTYNYVLGVL 341 (509)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~~t~~~li~~~ 341 (509)
..|+-...+|..+|..+.|-..+++.. -...+.+.++|+++|++-..--. ..+ ..-|..+-..+
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa-----------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~l 160 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA-----------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH-----------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHh
Confidence 456788889999998888776666531 01122234445555544321100 011 11223333445
Q ss_pred HhcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHH
Q 047221 342 CKNGQDADACELLEEMLGR----NCHPDA-ITYEIFIVYSCRVGKFDVAFNFFNQMVKRG---LQPRLATHAAFIKGYFI 413 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~ 413 (509)
.+...+++|-.-|..-... .--++. ..|.+.|-.|....++..|+..++.--+.+ -.-+..+...|+.+| .
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d 239 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-D 239 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-c
Confidence 5566666654443322111 111222 235566666777778888888888743321 122567778888887 4
Q ss_pred cCCHHHHHHHH
Q 047221 414 FYRYEDAYKYV 424 (509)
Q Consensus 414 ~g~~~~A~~~~ 424 (509)
.|+.+.+-.++
T Consensus 240 ~gD~E~~~kvl 250 (308)
T KOG1585|consen 240 EGDIEEIKKVL 250 (308)
T ss_pred cCCHHHHHHHH
Confidence 57888777765
No 219
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.35 E-value=0.19 Score=48.03 Aligned_cols=132 Identities=11% Similarity=0.007 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCC-CCCHH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMV----KRGLQ-PRLATHAAFIKGYFIFYRYEDAYKYVVLSAD----KYK-SSSNM 437 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~~ 437 (509)
.|..|-..|.-.|+++.|+...++=. +-|-. .....+..|-.+|.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 46666666777789999988776432 22311 1234677888899999999999999886542 221 22334
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH----C-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 438 LYSLLASLHDKNNNPVMAKNVLSEMMK----N-GLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 438 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
+.-+|.+.|.-...+++|+.++.+-.. . ...-....|.+|-.++...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 555688888888899999998876432 1 1223456889999999999999999888766543
No 220
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.25 E-value=0.41 Score=47.03 Aligned_cols=64 Identities=11% Similarity=-0.084 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 365 DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRL----ATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
+...++.+-.+|.+.|++++|+..|++.++. .|+. .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4556666666777777777777777766654 3442 24666677777777777777777666553
No 221
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.12 E-value=0.82 Score=37.75 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=76.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047221 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDK 448 (509)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 448 (509)
...+|..+.+.+.......+++.+...+ ..+....+.++..|++.+ .++....++. . .+......++..|.+
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~ 81 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence 3467778888889999999999998887 367889999999999864 4555555542 1 223334457788888
Q ss_pred CCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHH
Q 047221 449 NNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTS-HQEHMAKCLSSR 496 (509)
Q Consensus 449 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~ 496 (509)
.+.++++.-++.++.. +...+..+.+. ++.+.|.+++++
T Consensus 82 ~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 82 AKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred cCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh
Confidence 8888888888887632 22333333333 666766666654
No 222
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.11 E-value=1.8 Score=40.79 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHH
Q 047221 247 KKGIWRVVEVLNQVGGSCLVSGVRA 271 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g~~~~~~~~~~ 271 (509)
+++...+++.|.+.|+.-+..+|-+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHH
Confidence 4455666777777777766665544
No 223
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.05 E-value=0.58 Score=46.84 Aligned_cols=154 Identities=10% Similarity=0.027 Sum_probs=83.4
Q ss_pred HHHhcCCHHHHHHHHH--HcCC--CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHH
Q 047221 275 MFSVLGLYEMAKYVIK--KTER--KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350 (509)
Q Consensus 275 ~~~~~g~~~~A~~~~~--~m~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 350 (509)
...-.|+++++.++.+ ++-| ...-.+.++.-+-+.|..+.|+++-.+-. .-.....+.|+++.|
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 3344577777555443 1211 13345666666677777777776653322 112334567777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 351 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
.++.++. .+...|..|-....+.|+++-|++.|++.. -+..|+-.|.-.|+.+.-.++.+.....
T Consensus 338 ~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6665432 256677777777777777777777776643 2455666666777777766666665555
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 047221 431 YKSSSNMLYSLLASLHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 431 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 461 (509)
|- ++....++.-.|+.++..+++.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 42 44445555556666666666553
No 224
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.00 E-value=1.1 Score=42.34 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=89.8
Q ss_pred ccHHHHHHHHHHHcCCCCChHHHHHHHHHHHh--cCC----hHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHHcCC-
Q 047221 312 FKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK--NGQ----DADACELLEEMLGRNC---HPDAITYEIFIVYSCRVGK- 381 (509)
Q Consensus 312 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~--~g~----~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~- 381 (509)
+++.+.+++.|.+.|+.-+..+|-+....... ..+ ...|..+|+.|++... .++...+.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 55667788889999998888887664333333 222 4568889999988732 3455667666655 2333
Q ss_pred ---hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 047221 382 ---FDVAFNFFNQMVKRGLQPRLA-THAAFIKGYFIFYR---YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVM 454 (509)
Q Consensus 382 ---~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 454 (509)
.+.++.+|+.+.+.|+..+-. -+-+-|-++..... +..+.++++.+.+.|+++....|..+.-...-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 466778888888877655432 23333333332211 45678888888888888888777654433323333324
Q ss_pred HHHHHHHH
Q 047221 455 AKNVLSEM 462 (509)
Q Consensus 455 a~~~~~~m 462 (509)
..+-+.++
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44444433
No 225
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.99 E-value=2.4 Score=43.11 Aligned_cols=107 Identities=9% Similarity=-0.045 Sum_probs=61.2
Q ss_pred HHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCC-Ccc-----CHHHHHHHHHHHHhc---cCCH
Q 047221 177 ALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQ-VCL-----NEKAFGFLPVLISSK---ALTK 247 (509)
Q Consensus 177 A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~p-----~~~~~~~ll~~~~~~---~~~~ 247 (509)
..-+|.-+..+-|. ....+++..+=.|+-+.+++.+.+..+.+ +.- -.-.|+..+...+.. ....
T Consensus 176 G~G~f~L~lSlLPp------~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~ 249 (468)
T PF10300_consen 176 GFGLFNLVLSLLPP------KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPL 249 (468)
T ss_pred HHHHHHHHHHhCCH------HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCH
Confidence 45666666555566 77889999999999999999998765432 211 112333333323322 3445
Q ss_pred HHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 047221 248 KGIWRVVEVLNQVGGSCLVSGV-RALIEMFSVLGLYEMAKYVIKK 291 (509)
Q Consensus 248 ~~a~~~~~~m~~~g~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~ 291 (509)
+.|.++++.+.+.- |+...| -.-...+...|++++|.+.|++
T Consensus 250 ~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~ 292 (468)
T PF10300_consen 250 EEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFER 292 (468)
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 66666666666532 333222 2333445555666666666654
No 226
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.96 E-value=5.3 Score=41.30 Aligned_cols=296 Identities=11% Similarity=0.026 Sum_probs=147.4
Q ss_pred HHHHHHHhcCCc-hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCc----cCHHHHHHHHH
Q 047221 164 IEILRVLNSEKV-SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVC----LNEKAFGFLPV 238 (509)
Q Consensus 164 ~~ll~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~----p~~~~~~~ll~ 238 (509)
.+.=+++.++++ ..+++.+.+..+.... .-.+=|.+ --|++++|++++-+|-++++. ...--|-.+..
T Consensus 709 ~tAE~AFVrc~dY~Gik~vkrl~~i~s~~-----~q~aei~~--~~g~feeaek~yld~drrDLAielr~klgDwfrV~q 781 (1189)
T KOG2041|consen 709 DTAEHAFVRCGDYAGIKLVKRLRTIHSKE-----QQRAEISA--FYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQ 781 (1189)
T ss_pred hhHhhhhhhhccccchhHHHHhhhhhhHH-----HHhHhHhh--hhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHH
Confidence 344456677776 5666666662221110 11222232 357788888888887666432 12222333333
Q ss_pred HHHhccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------------CHHHHHHHHHHcCCCHHHHHHH
Q 047221 239 LISSKAL---TKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLG-------------LYEMAKYVIKKTERKVSYYNIL 302 (509)
Q Consensus 239 ~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~~~~~~~~~l 302 (509)
.+ ..++ +-+.-...++.|-+. ..+...|......|..+| ++++.+.+-..++.|....-.|
T Consensus 782 L~-r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~ 858 (1189)
T KOG2041|consen 782 LI-RNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVM 858 (1189)
T ss_pred HH-HccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHH
Confidence 11 1111 111111222222110 011122333344444444 4444444444556677777788
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH------------
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYE------------ 370 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~------------ 370 (509)
...+...|..++|.+.|-+... | ...+.+|...+++.+|.++-+...- |.+.+.-
T Consensus 859 a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~l----~qv~tliak~aaqll~~~~ 925 (1189)
T KOG2041|consen 859 ADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQL----PQVQTLIAKQAAQLLADAN 925 (1189)
T ss_pred HHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhccc----hhHHHHHHHHHHHHHhhcc
Confidence 8889999999888887754432 2 2345667777788777776554321 1111111
Q ss_pred --HHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH----HHHH-HHHHHHH----------HcCCHHHHHHHHHHHHh
Q 047221 371 --IFIVYSCRVGKFDVAFNFFNQMVKR----GLQPRL----ATHA-AFIKGYF----------IFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 371 --~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~----~~~~-~li~~~~----------~~g~~~~A~~~~~~m~~ 429 (509)
--|..+.+.|+.-+|-+++.+|.++ +.++-. .+.. .|+.-+. +.|..++|..+++...-
T Consensus 926 ~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l 1005 (1189)
T KOG2041|consen 926 HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLL 1005 (1189)
T ss_pred hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhh
Confidence 1245566777777777787777654 333221 1111 1222221 24666667665543221
Q ss_pred C---C----CCCCHHHHHHHH--HHHHhCCChHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHH
Q 047221 430 K---Y----KSSSNMLYSLLA--SLHDKNNNPVMAKNVLSEMMKN-GLRPNVSVYRRVLKHLH 482 (509)
Q Consensus 430 ~---~----~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~ 482 (509)
. . .-.....|+.+| +--...|.++.|++.--.+.+. .+-|....|..+.-+-+
T Consensus 1006 ~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaac 1068 (1189)
T KOG2041|consen 1006 AEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAAC 1068 (1189)
T ss_pred hhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHh
Confidence 1 0 011223444444 4445678888888775555442 45666667766544333
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.89 E-value=0.41 Score=47.01 Aligned_cols=63 Identities=13% Similarity=-0.122 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCC-H---HHHHHHHHHHHhcCCccHHHHHHHHHHHc
Q 047221 263 SCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERK-V---SYYNILIKEMCRRCDFKGPRDLLVEMRQV 325 (509)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (509)
+.+...++.+..+|.+.|++++|...|++. .|+ . .+|..+..+|.+.|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677888888888888888888888773 444 2 35888888888888888888888887764
No 228
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=1.5 Score=40.47 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHcCCCCChHHH
Q 047221 262 GSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRC---DFKGPRDLLVEMRQVGCEPITLTY 334 (509)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~ 334 (509)
-+-|...|-.|...|...|+.+.|...|.+. +++...+..+..++.... +..++.++|+++.... .-|..+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 3678889999999999999999999999874 567777777776655543 3668999999999874 4566667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 047221 335 NYVLGVLCKNGQDADACELLEEMLGR 360 (509)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~m~~~ 360 (509)
..|...+...|++.+|...|+.|.+.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77778899999999999999999987
No 229
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.84 E-value=3.8 Score=41.66 Aligned_cols=134 Identities=13% Similarity=-0.029 Sum_probs=78.6
Q ss_pred chHHHHHHhCCCCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhc----cCCHHHHHHHH
Q 047221 145 SETESKLLSMSVSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGR----LDDYETMRQLL 218 (509)
Q Consensus 145 ~~~~~~l~~~~~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~----~g~~~~A~~l~ 218 (509)
+.+.+.+.-.|.+-|...--.+|....+.+. .++..+--+ .|+.++..++. ..+.+.|.+++
T Consensus 189 p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL------------~y~~~~~~~~~~~~~~~~~~~a~~lL 256 (468)
T PF10300_consen 189 PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLL------------WYHLVVPSFLGIDGEDVPLEEAEELL 256 (468)
T ss_pred HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHH------------HHHHHHHHHcCCcccCCCHHHHHHHH
Confidence 3444455555555555555555555444332 222222222 56666655554 45688999999
Q ss_pred HHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 047221 219 NDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGG---SCLVSGVRALIEMFSVLGLYEMAKYVIKKT 292 (509)
Q Consensus 219 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 292 (509)
+.+.++ -|+...|...-.......|++++|.+.++....... ......+--+...+.-.++|++|...|..+
T Consensus 257 ~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L 331 (468)
T PF10300_consen 257 EEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRL 331 (468)
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence 999765 589989988888788888889999999997653110 111122333444444455555555555544
No 230
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.73 E-value=4.7 Score=39.57 Aligned_cols=262 Identities=12% Similarity=0.116 Sum_probs=146.7
Q ss_pred HhccCCHHHHHHHHHHHHHcCCC-C---C-HHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCHHHHHHHHHH--HHhcC
Q 047221 241 SSKALTKKGIWRVVEVLNQVGGS-C---L-VSGVRALIEMFSVLGLYEMAKYVIKKT---ERKVSYYNILIKE--MCRRC 310 (509)
Q Consensus 241 ~~~~~~~~~a~~~~~~m~~~g~~-~---~-~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~li~~--~~~~g 310 (509)
+.+.+++.+++.+|.+.....-. | . ....+-++++|.. .+++.....+... .+ ...|-.+..+ +.+.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Confidence 44666799999999888653211 1 1 2334677888875 3444444444333 33 2334444333 34678
Q ss_pred CccHHHHHHHHHHHc--CCCCC------------hHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHH
Q 047221 311 DFKGPRDLLVEMRQV--GCEPI------------TLTYNYVLGVLCKNGQDADACELLEEMLGR----NCHPDAITYEIF 372 (509)
Q Consensus 311 ~~~~A~~~~~~m~~~--g~~p~------------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~l 372 (509)
.+++|++.+..-.++ +-.|. -.-=+..+..+...|++.++..++++|... .+.-+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999988877755 32221 111156667778899999999988887765 344688888887
Q ss_pred HHHHHHcC--------C-------hHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Q 047221 373 IVYSCRVG--------K-------FDVAFNFFNQMVKR------GLQPRLATHAAFIKGYFIFY--RYEDAYKYVVLSAD 429 (509)
Q Consensus 373 i~~~~~~g--------~-------~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 429 (509)
+-.+++.= . ++-+.-..++|... .+.|-......++....-.- +..--+++++.-..
T Consensus 174 vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~ 253 (549)
T PF07079_consen 174 VLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWEN 253 (549)
T ss_pred HHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHh
Confidence 66665421 1 12222222333221 22333333333333322211 11112222222233
Q ss_pred CCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047221 430 KYKSSSNM-LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP----NVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGS 504 (509)
Q Consensus 430 ~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 504 (509)
.-+.|+-. ....|+..+.. +.+++..+-+.+....+.+ =..+|..++....+.++..+|.+.+.-++-.++..
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~ 331 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRI 331 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 44555533 22334444333 5566666655554432222 23478999999999999999999999998777665
Q ss_pred Cc
Q 047221 505 SV 506 (509)
Q Consensus 505 ~~ 506 (509)
++
T Consensus 332 sv 333 (549)
T PF07079_consen 332 SV 333 (549)
T ss_pred hh
Confidence 53
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.59 E-value=1.9 Score=34.59 Aligned_cols=137 Identities=12% Similarity=0.108 Sum_probs=78.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHH
Q 047221 342 CKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT---HAAFIKGYFIFYRYE 418 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~ 418 (509)
.-.|.++++.++..+.... .+..-||-+|.-....-+-+-..++++.+-+ -.|... .-.++.+|++.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc--
Confidence 3457778888888777764 3566677777666655555555555555422 222221 1234444444433
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 419 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
+......-+..+...|+-+.-.++++++.+ .-.+++.....+..||.+.|...++.+++++.-
T Consensus 85 ----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 85 ----------------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 223344456666778888888888888764 345677777788888888888888888888888
Q ss_pred hCCCC
Q 047221 499 SLSLG 503 (509)
Q Consensus 499 ~~~~~ 503 (509)
+.|++
T Consensus 148 ekG~k 152 (161)
T PF09205_consen 148 EKGLK 152 (161)
T ss_dssp HTT-H
T ss_pred HhchH
Confidence 88765
No 232
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.40 E-value=3.8 Score=37.13 Aligned_cols=57 Identities=7% Similarity=0.005 Sum_probs=38.0
Q ss_pred HHHHhcCCccHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047221 304 KEMCRRCDFKGPRDLLVEMRQVG--CEPITLTYNYVLGVLCKNGQDADACELLEEMLGR 360 (509)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 360 (509)
..-.+.|++++|.+.|+.+..+- -+-...+.-.++-++-+.+++++|...+++....
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33456677777777777777542 1223455566667777888888888888777665
No 233
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=1.4 Score=46.25 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=23.4
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 355 (509)
|.-|....++.+-...++.+.+.|+ .+...-+.||.+|.+.++.++-.+..+
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~ 455 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFIS 455 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHh
Confidence 3334444444444444445544442 233333445555555555544444333
No 234
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.22 E-value=3.2 Score=35.59 Aligned_cols=126 Identities=13% Similarity=0.001 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHH
Q 047221 294 RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR---NCHPDAITYE 370 (509)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~ 370 (509)
|++..--.|..+..+.|+..||...|++....-.--|....-.+..+....++...|...++.+.+. +-.||. .-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hH
Confidence 3344444566666677777777777766665434445555566666666667777777777666554 223333 22
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047221 371 IFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKY 423 (509)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 423 (509)
.+-..+...|+.++|+.-|+..... -|+...-.---..+.+.|+.++|..-
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 3445666667777777777766654 34433333333444556655554433
No 235
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.13 E-value=5.1 Score=37.57 Aligned_cols=162 Identities=11% Similarity=0.029 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhcCCcc---HHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047221 297 SYYNILIKEMCRRCDFK---GPRDLLVEMRQVGCEPI-TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIF 372 (509)
Q Consensus 297 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 372 (509)
.+...++.+|...+..+ +|.++++.+.... |+ ...+..-+..+.+.++.+.+.+++.+|... +.-....+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 34556666666665533 4555555554432 22 344445555555677777777777777765 22123334444
Q ss_pred HHHH---HHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHH---HHc------CCHHHHHHHHHHHHhC-CCCCCHH
Q 047221 373 IVYS---CRVGKFDVAFNFFNQMVKRGLQPRLA--THAAFIKGY---FIF------YRYEDAYKYVVLSADK-YKSSSNM 437 (509)
Q Consensus 373 i~~~---~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~---~~~------g~~~~A~~~~~~m~~~-~~~p~~~ 437 (509)
+..+ ... ....|...+..+....+.|... .=..++.-. .+. +.++...++++.+.+. +...+..
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 4433 332 2345555555555544444442 111111111 111 1245555555543332 2222332
Q ss_pred HHHHH-------HHHHHhCCChHHHHHHHHHH
Q 047221 438 LYSLL-------ASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 438 ~~~~l-------i~~~~~~g~~~~a~~~~~~m 462 (509)
+-.++ ...+.+.+++++|.+.|+-.
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 22222 23345678888888888743
No 236
>PRK15331 chaperone protein SicA; Provisional
Probab=93.98 E-value=2.2 Score=35.89 Aligned_cols=87 Identities=9% Similarity=0.015 Sum_probs=66.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 047221 376 SCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMA 455 (509)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 455 (509)
+-..|++++|..+|+-+...+ .-+..-|..|..+|-..+++++|...|......+. -|...+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 347799999999999887654 22566678888888889999999999987655432 2222244578888899999999
Q ss_pred HHHHHHHHH
Q 047221 456 KNVLSEMMK 464 (509)
Q Consensus 456 ~~~~~~m~~ 464 (509)
.+.|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999998876
No 237
>PRK15331 chaperone protein SicA; Provisional
Probab=93.70 E-value=3.7 Score=34.56 Aligned_cols=90 Identities=7% Similarity=-0.061 Sum_probs=65.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 047221 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418 (509)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 418 (509)
.-+...|++++|..+|.-+.-.+.. +..-|..|-.+|-..+++++|...|......+. -|...+--+-.+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3355789999999999987765322 445566666667777899999999987665442 24444555788888999999
Q ss_pred HHHHHHHHHHhC
Q 047221 419 DAYKYVVLSADK 430 (509)
Q Consensus 419 ~A~~~~~~m~~~ 430 (509)
.|+..|+...+.
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999887763
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.69 E-value=6.2 Score=37.01 Aligned_cols=162 Identities=9% Similarity=-0.065 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047221 332 LTYNYVLGVLCKNGQDA---DACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFI 408 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 408 (509)
.++..++.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+++.+++.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 46677888888877654 566677777555221 24455555677777899999999999999872 22334455555
Q ss_pred HHH---HHcCCHHHHHHHHHHHHhCCCCCCHH-HHH-HHHH---HHHhCC------ChHHHHHHHHHHHHC-CCCcCHHH
Q 047221 409 KGY---FIFYRYEDAYKYVVLSADKYKSSSNM-LYS-LLAS---LHDKNN------NPVMAKNVLSEMMKN-GLRPNVSV 473 (509)
Q Consensus 409 ~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~-~li~---~~~~~g------~~~~a~~~~~~m~~~-g~~p~~~t 473 (509)
..+ .... ...|...++.+....+.|... ... .++. ...+.+ +.+...+++....+. +-+.+..+
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 554 3333 355666666666555554442 111 1111 111211 144455555543332 23333333
Q ss_pred HHHH-------HHHHHhcCCHHHHHHHHHH
Q 047221 474 YRRV-------LKHLHTSHQEHMAKCLSSR 496 (509)
Q Consensus 474 ~~~l-------l~~~~~~g~~~~a~~~~~~ 496 (509)
-.++ ...+.+.+++++|.+.++-
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3222 2345688999999998874
No 239
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=11 Score=39.55 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=88.8
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047221 326 GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHA 405 (509)
Q Consensus 326 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 405 (509)
|......+.+--+.-+...|+-.+|.++-.+.+ -||-..|-.-+.+++..++|++-+++-+.+. ...-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCch
Confidence 434455566666777888999999998877664 4688888888999999999988877666543 244566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 047221 406 AFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 461 (509)
-.+.+|.+.|+.++|.+++.+.... . -...+|.+.|++.+|.++--+
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 7899999999999999998654321 1 467788899999988876543
No 240
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.60 E-value=4.1 Score=34.62 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=63.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHh
Q 047221 352 ELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY--RYEDAYKYVVLSAD 429 (509)
Q Consensus 352 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 429 (509)
+.++.+.+.|++|+...|..+|..+.+.|++.... ++...++-+|.......+-.+.... -.+-|+.++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 34445555666666666666666666666644433 3333344444433333332222111 12233333333321
Q ss_pred CCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047221 430 KYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 430 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 500 (509)
.+..+++.+...|++-+|+++.+..... +......++++-.+.++...-..+++-..+.
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1344556666667777777666654221 1111233455555555555555555544443
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.52 E-value=7.8 Score=37.65 Aligned_cols=159 Identities=11% Similarity=0.042 Sum_probs=90.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcC--CC------HHHHHHHHHHHHh---cCCccHHHHHHHHHHHcCCCCChHHHHHHHH
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKTE--RK------VSYYNILIKEMCR---RCDFKGPRDLLVEMRQVGCEPITLTYNYVLG 339 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~--~~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 339 (509)
.++-.|....+++...++++.++ |+ ...--...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777777777777777762 11 1111122334445 6778888888877555545677777777766
Q ss_pred HHHh---------cCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHc-CChHHHHHHH----HHHHHCCC---CC
Q 047221 340 VLCK---------NGQDADACELLEEMLGRNCHPDAIT---YEIFIVYSCRV-GKFDVAFNFF----NQMVKRGL---QP 399 (509)
Q Consensus 340 ~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~-g~~~~a~~~~----~~m~~~g~---~p 399 (509)
.|-. ....++|...|.+--+. .||.++ +.+|+...... ..-.+..++- ..+.+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 6542 12356677777655443 344432 22222222211 1112223322 11223332 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
|-..+.+++.++.-.|+.++|.+..++|....
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 45567889999999999999999999998764
No 242
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=4.6 Score=37.94 Aligned_cols=111 Identities=13% Similarity=-0.022 Sum_probs=59.4
Q ss_pred cCCHHHHHHHHHH----cCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHH----HHHHHHHHhcCChHHH
Q 047221 279 LGLYEMAKYVIKK----TERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY----NYVLGVLCKNGQDADA 350 (509)
Q Consensus 279 ~g~~~~A~~~~~~----m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----~~li~~~~~~g~~~~a 350 (509)
.|+..+|-..+++ .|.|..+++-.=.+|.-.|+.+.-...+++..-. ..+|...| ....-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3444444433333 3566666666666777777766666666665532 12333222 2222233456667777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 047221 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQ 391 (509)
Q Consensus 351 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 391 (509)
++.-++..+-+ +.|...-.++...+--.|+..++.++..+
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 76666655542 23445555555556666666666665444
No 243
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.44 E-value=9.6 Score=42.02 Aligned_cols=121 Identities=4% Similarity=-0.010 Sum_probs=58.3
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhCCCc------cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--HHH
Q 047221 200 LVIDNCGRLDDYETMRQLLNDFNVYQVC------LNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSG--VRA 271 (509)
Q Consensus 200 ~li~~~~~~g~~~~A~~l~~~m~~~~~~------p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ 271 (509)
.-+..+++.+++.+|.++.++ ..+. -+...|---+.++...-++.+-...++..+....+.-+... +.+
T Consensus 682 a~vr~~l~~~~y~~AF~~~Rk---hRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s 758 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRK---HRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGS 758 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccc
Confidence 344556666677776655443 3221 23444555555566666666666666666654322111110 000
Q ss_pred HHHHHHhcC----CHHHHH----HHHHHcCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHH
Q 047221 272 LIEMFSVLG----LYEMAK----YVIKKTERKVSYYNILIKEMCRRC--DFKGPRDLLVEMRQ 324 (509)
Q Consensus 272 li~~~~~~g----~~~~A~----~~~~~m~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 324 (509)
-...|.... +++..- ..+.+..|+ ...-.+|..|++.+ .+++|+....+...
T Consensus 759 ~k~~~~~r~~~d~kv~~vc~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 759 GKQVYMSRDPYDNKVNSVCDAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cceeEEeccchhhHHHHHHHHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 001111111 111111 222222344 34456778888877 67777777777664
No 244
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.41 E-value=1.6 Score=41.99 Aligned_cols=88 Identities=13% Similarity=0.007 Sum_probs=49.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHc----C---------------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChH
Q 047221 272 LIEMFSVLGLYEMAKYVIKKT----E---------------RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITL 332 (509)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m----~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 332 (509)
-.+.|.+.|++..|..-|++. + .-..+++.+..+|.+.+++.+|++.-++.+..+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 345677778888887777653 1 012345555555566666666665555555544 44454
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGR 360 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~ 360 (509)
..--=..+|...|+++.|...|..+++.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4444455555555555555555555553
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.38 E-value=2 Score=39.18 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC-HHHHHHHH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRG--LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYK-SSS-NMLYSLLA 443 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~li 443 (509)
.|+.-+..+ +.|++.+|...|...++.. -.-....+--|.+++...|++++|..+|..+.+... .|. ..++--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 566665554 5566777777777766552 111123344466777777777777777776665421 111 13444566
Q ss_pred HHHHhCCChHHHHHHHHHHHHC
Q 047221 444 SLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666777777777777776653
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.83 E-value=3.4 Score=38.78 Aligned_cols=155 Identities=10% Similarity=0.008 Sum_probs=113.1
Q ss_pred HhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCh
Q 047221 307 CRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAI----TYEIFIVYSCRVGKF 382 (509)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~ 382 (509)
.-.|++.+|-..++++.+. .+.|...+.-.=++|...|+.+.-...++++... -.+|.. .-....-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3478899999999998875 4778889999999999999999888888887765 233433 333334455688999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 047221 383 DVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK---YKSSSNMLYSLLASLHDKNNNPVMAKNVL 459 (509)
Q Consensus 383 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 459 (509)
++|++.-++..+-+ +-|.-.-.++.+.+...|+..++.++..+-.+. +.-.-..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999888876654 346667778888888899999999988765443 11112233444555666779999999999
Q ss_pred HHHHH
Q 047221 460 SEMMK 464 (509)
Q Consensus 460 ~~m~~ 464 (509)
+.-+-
T Consensus 271 D~ei~ 275 (491)
T KOG2610|consen 271 DREIW 275 (491)
T ss_pred HHHHH
Confidence 86443
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.76 E-value=2.8 Score=34.41 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=34.8
Q ss_pred HcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047221 378 RVGKFDVAFNFFNQMVKRG--LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHD 447 (509)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 447 (509)
+.|++++|.+.|+.+..+- -.-....--.|+.+|.+.|++++|...+++..+....-..+-|...+.|++
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 4566666666666655441 011223344455666666666666666666555443322333444444443
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.32 E-value=4.2 Score=32.66 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=55.1
Q ss_pred HHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCCh---HHHHHHHHHHHhcCCh
Q 047221 275 MFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPIT---LTYNYVLGVLCKNGQD 347 (509)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~li~~~~~~g~~ 347 (509)
+++..|+++.|.+.|.+. +.+...||.-..++.-.|+.++|++=+++..+..-.-+. ..|.--...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 456677777777777663 566777777777777778877777777766653211122 1222233346667777
Q ss_pred HHHHHHHHHHHhCC
Q 047221 348 ADACELLEEMLGRN 361 (509)
Q Consensus 348 ~~a~~~~~~m~~~g 361 (509)
+.|..=|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77777777665554
No 249
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.20 E-value=7.6 Score=34.07 Aligned_cols=216 Identities=16% Similarity=0.078 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHc------CCCHHHHHHHHHHHHhcCCccHHHHHH
Q 047221 247 KKGIWRVVEVLNQVGGS-CLVSGVRALIEMFSVLGLYEMAKYVIKKT------ERKVSYYNILIKEMCRRCDFKGPRDLL 319 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~~~~~~~li~~~~~~g~~~~A~~~~ 319 (509)
...+...+......... .....+......+...+.+..+...+... ......+......+...+++.++.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34444444444433222 12345556666666666666666555543 122344555555555566666666666
Q ss_pred HHHHHcCCCCChHHHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 047221 320 VEMRQVGCEPITLTYNYVLG-VLCKNGQDADACELLEEMLGRNC--HPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG 396 (509)
Q Consensus 320 ~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 396 (509)
.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.+.....
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 119 EKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 6655443222 111222222 45666666666666666543211 0122233333333445566666666666655442
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 397 LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 397 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
.......+..+-..+...++.+.|...+......... ....+..+...+...+..+++...+.+...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 198 PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112445555555566666666666666555543211 122233333333344555566655555544
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.16 E-value=4.3 Score=37.11 Aligned_cols=100 Identities=14% Similarity=0.054 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCcC-HHHH
Q 047221 401 LATHAAFIKGYFIFYRYEDAYKYVVLSADKYK----SSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN-GLRPN-VSVY 474 (509)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-~~t~ 474 (509)
...|+.-++.| +.|++..|..-|....+... .|+. +--|...+...|++++|..+|..+.+. +-.|. ...+
T Consensus 142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal 218 (262)
T COG1729 142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL 218 (262)
T ss_pred hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence 33688877765 67889999999999887643 3444 445899999999999999999999874 22222 2567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 475 RRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 475 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
.-|.....+.|+.++|..+|+++.+.-+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 77788889999999999999999876544
No 251
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.68 E-value=1.9 Score=39.98 Aligned_cols=56 Identities=9% Similarity=0.050 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 047221 268 GVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMR 323 (509)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (509)
++..++..+..+|+.+.+...++++ +-|...|..+|.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3444444444444444444444443 2334444444444444444444444444443
No 252
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=14 Score=35.91 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=20.1
Q ss_pred HcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047221 378 RVGKFDVAFNFFNQMVKR---GLQPRLATHAAFIKGYFIFYRYEDAYKYVVL 426 (509)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (509)
+.|.+..|.+.|.+.+.. +.+++...|.....+..+.|+.++|+.--++
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 344444444444444322 2223333333344444444444444444433
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.56 E-value=12 Score=34.86 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=61.9
Q ss_pred HHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047221 306 MCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVA 385 (509)
Q Consensus 306 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 385 (509)
....|++.+|..+|+...+.. .-+...--.+..+|...|+.+.|..++..+...--........+-|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 344556666666666555442 2223444556666666667666666666554432111122222233444444444444
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047221 386 FNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 386 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (509)
.++-++.-.. +-|...--.+...|...|+.+.|.+.+-.+..
T Consensus 223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444444332 22555555566666667777776655544443
No 254
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.55 E-value=4.7 Score=32.38 Aligned_cols=91 Identities=15% Similarity=0.008 Sum_probs=47.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCC
Q 047221 340 VLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT---HAAFIKGYFIFYR 416 (509)
Q Consensus 340 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~ 416 (509)
+.+..|+++.|++.|.+.... .+-....||.-..++.-.|+.++|++-+++..+..-.-+... |..--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566666666666665554 233455666666666666666666666665554321112221 2222223455566
Q ss_pred HHHHHHHHHHHHhCC
Q 047221 417 YEDAYKYVVLSADKY 431 (509)
Q Consensus 417 ~~~A~~~~~~m~~~~ 431 (509)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666665554443
No 255
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.53 E-value=2.4 Score=39.24 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK-----RGLQPRLATHAAF 407 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~l 407 (509)
++..++..+...|+.+.+...++++... -+-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 3344445555555555555555555544 233455555555555555555555555555443 2555555444443
Q ss_pred HHH
Q 047221 408 IKG 410 (509)
Q Consensus 408 i~~ 410 (509)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.27 E-value=17 Score=36.34 Aligned_cols=78 Identities=10% Similarity=-0.018 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 047221 300 NILIKEMCRRCDFKGPRDLLVEMRQVG-CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHP-DAITYEIFIVYSC 377 (509)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~ 377 (509)
..+..+..+.|+.++|++.|++|.+.. ..-+......|+.++...+.+.++..++.+-.+...+. -...|++.+--+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 457777788999999999999998653 11234466789999999999999999999875443322 2456777664443
No 257
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=9.6 Score=36.92 Aligned_cols=138 Identities=16% Similarity=0.076 Sum_probs=79.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 047221 338 LGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRY 417 (509)
Q Consensus 338 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 417 (509)
-+.|.+.|++..|..-|++.... | -|.+.-+.++..... .. -..++..|.-+|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l-~~~~~~~~ee~~~~~-~~-------k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------L-EYRRSFDEEEQKKAE-AL-------KLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------h-hccccCCHHHHHHHH-HH-------HHHHhhHHHHHHHhhhhH
Confidence 36677888888888887775543 0 011111112211111 11 133456677777777888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-cCC-HHHHHHHHH
Q 047221 418 EDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHT-SHQ-EHMAKCLSS 495 (509)
Q Consensus 418 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~-~g~-~~~a~~~~~ 495 (509)
..|++.-+...+.+ ..|.-..--=..+|...|+++.|+..|+++++ +.|+...-..=+..|.+ ..+ .+...++|.
T Consensus 274 ~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 274 KEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777776654 23444444456677777888888888888776 56665555554444432 222 333456666
Q ss_pred HHHh
Q 047221 496 RYSS 499 (509)
Q Consensus 496 ~m~~ 499 (509)
.|-.
T Consensus 351 ~mF~ 354 (397)
T KOG0543|consen 351 NMFA 354 (397)
T ss_pred HHhh
Confidence 6653
No 258
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.01 E-value=9 Score=32.57 Aligned_cols=135 Identities=14% Similarity=0.139 Sum_probs=87.8
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047221 316 RDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 316 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
.+.++.+.+.|+.|+...|..++..+.+.|++.. +..+.+.++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 4556667788999999999999999999998654 4556666677777666655544432 334445554455443
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 396 GLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 396 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
=...+..+++.+...|++-+|.++.+...... ......++.+-.+.++...-..+|+-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11246678888999999999999987653321 11223466666677666555555554444
No 259
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.82 E-value=3.9 Score=35.36 Aligned_cols=62 Identities=10% Similarity=-0.017 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 403 THAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN--MLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
.+..+.+.|++.|+.+.|.+.|.++.+....+.. ..+-.+|......|++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3455555666666666666666665554332222 2344455555555666665555555443
No 260
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.59 E-value=16 Score=34.98 Aligned_cols=220 Identities=12% Similarity=0.018 Sum_probs=118.4
Q ss_pred cCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHc------CC---CHHHHHHHHHHHHhcCC
Q 047221 244 ALTKKGIWRVVEVLNQV--GGSCLVSGVRALIEMFSVLGLYEMAKYVI-KKT------ER---KVSYYNILIKEMCRRCD 311 (509)
Q Consensus 244 ~~~~~~a~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m------~~---~~~~~~~li~~~~~~g~ 311 (509)
..+.+.++..+...... ....--.++..+.++.++.|.++++...- .+| +. -..+|-.+..++-+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44477777777665542 12223346778888888888888776532 122 11 13456666666666666
Q ss_pred ccHHHHHHHHHHHc-CCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCCh
Q 047221 312 FKGPRDLLVEMRQV-GCEP---ITLTYNYVLGVLCKNGQDADACELLEEMLGRN-----CHPDAITYEIFIVYSCRVGKF 382 (509)
Q Consensus 312 ~~~A~~~~~~m~~~-g~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~ 382 (509)
+.+++.+-..-... |..| ......+|-.+....+.++++++.|+...+-- -.....+|..|-..|.+..|+
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 66666655443322 2222 11223345566666667777777777654421 112234677777777777777
Q ss_pred HHHHHHHHHHHHC----CCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHh
Q 047221 383 DVAFNFFNQMVKR----GLQPRLATHAA-----FIKGYFIFYRYEDAYKYVVLSAD----KYKSS-SNMLYSLLASLHDK 448 (509)
Q Consensus 383 ~~a~~~~~~m~~~----g~~p~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~li~~~~~ 448 (509)
++|.-+..+..+- ++..-..-|.. |.-++...|.+.+|.+.-++..+ .|-.+ -....-.+.+.|-.
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 7777665554322 22222222332 22345566666666666655433 23111 11233345556666
Q ss_pred CCChHHHHHHHHHHH
Q 047221 449 NNNPVMAKNVLSEMM 463 (509)
Q Consensus 449 ~g~~~~a~~~~~~m~ 463 (509)
.|+.+.|..-|+...
T Consensus 259 ~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 259 RGDLERAFRRYEQAM 273 (518)
T ss_pred cccHhHHHHHHHHHH
Confidence 677777666666543
No 261
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.22 E-value=14 Score=33.39 Aligned_cols=204 Identities=13% Similarity=0.062 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 047221 266 VSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVL 341 (509)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 341 (509)
...|.-...+|....+++.|...+.+. +.+...|. ...-++.|.-+.++|.+. .--+.-|+--...|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 345666677777888888887766553 22222111 122345555666666542 12234456666778
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHHcCC
Q 047221 342 CKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR---G--LQPRLATHAAFIKGYFIFYR 416 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g--~~p~~~~~~~li~~~~~~g~ 416 (509)
..+|..+.|-.-++..-+. .+..++++|+++|++...- + ..--...+..+-..+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 8888887766666543321 2333444444444433211 0 00011223344445555566
Q ss_pred HHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCcCHHHHHHHHHHHHhcCCHH
Q 047221 417 YEDAYKYVVLSADK----YKSSSN-MLYSLLASLHDKNNNPVMAKNVLSEMMKNG---LRPNVSVYRRVLKHLHTSHQEH 488 (509)
Q Consensus 417 ~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~ 488 (509)
+++|-..|.+-... .--++. ..|-..|-.|.-..++..|.+.+++--+.+ -.-+..+...||.+| ..|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence 66655444322110 001111 234455556666778889999998854432 122556888888887 458888
Q ss_pred HHHHHHH
Q 047221 489 MAKCLSS 495 (509)
Q Consensus 489 ~a~~~~~ 495 (509)
++..++.
T Consensus 245 ~~~kvl~ 251 (308)
T KOG1585|consen 245 EIKKVLS 251 (308)
T ss_pred HHHHHHc
Confidence 8777653
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.17 E-value=9.3 Score=31.41 Aligned_cols=102 Identities=13% Similarity=-0.045 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 047221 401 LATHAAFIKGYFIFYRYEDAYKYVVLSADKYK--SSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478 (509)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 478 (509)
...|+.-..+ .+.|++++|.+.|+.+...-. .-....--.|+.+|.+.|++++|...+++.++..-.--..-|...+
T Consensus 11 ~~ly~~a~~~-l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 11 QELYQEAQEA-LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3445544444 577999999999999987622 1123345568999999999999999999999854332224466666
Q ss_pred HHHHhcCC-----------------HHHHHHHHHHHHhCCCC
Q 047221 479 KHLHTSHQ-----------------EHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 479 ~~~~~~g~-----------------~~~a~~~~~~m~~~~~~ 503 (509)
.+++.-.. ...|..-|+++.+.=+.
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 66543332 55677777777655443
No 263
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.06 E-value=3.9 Score=38.05 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHcC---CCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 047221 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVG---CEPI--TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYE 370 (509)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 370 (509)
..+...++..--...+++.++..+-+++... ..|+ .++|--++ -.-+.++++.++..=.+.|+-||..+++
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccchhhHH
Confidence 4445555555555667777777777776431 1222 23333322 2335667777777777778888888888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC
Q 047221 371 IFIVYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
.+|+.+.+.+++.+|..+.-.|...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888877777655
No 264
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.03 E-value=9.3 Score=40.48 Aligned_cols=177 Identities=11% Similarity=0.105 Sum_probs=127.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHH----HHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILI----KEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 344 (509)
...-++++.+...++.|..+-+.-..|..+-..+. +.+.+.|++++|...|-+-... ++| ..+|.-|...
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLda 410 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDA 410 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCH
Confidence 45788999999999999999988765554444444 4555789999999999776632 233 3456667777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047221 345 GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYV 424 (509)
Q Consensus 345 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 424 (509)
.++..-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-. .|.. ..-....+..+.+.+-.++|..+-
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 7788888889999998875 66667789999999999999888777654 2211 112455677778888888888876
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047221 425 VLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 425 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 463 (509)
..... .......+ +-..|++++|++++..|.
T Consensus 487 ~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 487 TKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 55432 23323333 347889999999999864
No 265
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.02 E-value=0.75 Score=27.63 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHH
Q 047221 439 YSLLASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 439 ~~~li~~~~~~g~~~~a~~~~~~m 462 (509)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455666666666666666666663
No 266
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.99 E-value=3.9 Score=35.34 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=26.1
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHH
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI--TLTYNYVLGVLCKNGQDADACELLEE 356 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~ 356 (509)
+..+...|++.|+.++|++.|.++.+....+. ...+-.+|..+...|++..+.....+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44444555555555555555555444322222 22233444444445555544444443
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.95 E-value=19 Score=34.76 Aligned_cols=65 Identities=15% Similarity=0.059 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 435 SNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP---NVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
...+|..++..+.+.|+++.|...+.++...+... +......-.+.+...|+.++|+..+++..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44578888888889999999998888887643211 334444556677788888888888888776
No 268
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=89.94 E-value=21 Score=35.21 Aligned_cols=50 Identities=14% Similarity=0.009 Sum_probs=39.2
Q ss_pred HhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 447 DKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
..+|++.++.-.-..+.+ +.|+..+|.-+--++....++++|..++..+.
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 356777777666555554 78999999888888888999999999998764
No 269
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.88 E-value=17 Score=33.84 Aligned_cols=138 Identities=5% Similarity=0.057 Sum_probs=84.7
Q ss_pred CChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHc-C-ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHH
Q 047221 345 GQDADACELLEEMLG-RNCHPDAITYEIFIVYSCRV-G-KFDVAFNFFNQMVKR-GLQPRLATHAAFIKGYFIFYRYEDA 420 (509)
Q Consensus 345 g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A 420 (509)
..+.+|+++|+.... ..+--|..+...+++..... + ....-.++.+.+... |-.++..+...+|..++..+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 344566666663222 23445677777777766652 2 222333344444332 4567777788888888888888888
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH-----HHCCCCcCHHHHHHHHHHHH
Q 047221 421 YKYVVLSADK-YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEM-----MKNGLRPNVSVYRRVLKHLH 482 (509)
Q Consensus 421 ~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-----~~~g~~p~~~t~~~ll~~~~ 482 (509)
.++++.-... +..-|..-|..+|......|+..-..++.++= .+.|+..+...-..+-+.+.
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 8888776554 55567777888888888888876666655541 23345555555555444443
No 270
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.82 E-value=13 Score=37.12 Aligned_cols=61 Identities=8% Similarity=-0.071 Sum_probs=46.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 404 HAAFIKGYFIFYRYEDAYKYVVLSADKY-KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
=..|..+..+.|+.++|.+.|++|.+.. ...+......|+.++...+.+.++..++.+-.+
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3456677778899999999999987543 223444666799999999999999999998754
No 271
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.07 E-value=27 Score=35.12 Aligned_cols=179 Identities=12% Similarity=0.056 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047221 295 KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIV 374 (509)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 374 (509)
|....-+++..+.++..+.-+..+-.+|..-| .+...|-.++..|... .-++-..+|+++.+..+. |++.-.-|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44455678888888888888888888888764 4677888888888888 556778888888876432 3333344444
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 047221 375 YSCRVGKFDVAFNFFNQMVKRGLQ-----PRLATHAAFIKGYFIFYRYEDAYKYVVLSADK-YKSSSNMLYSLLASLHDK 448 (509)
Q Consensus 375 ~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~ 448 (509)
-|-+ ++...+...|.+...+=++ .-...|..|+..- ..+.+..+.+..++... |...-.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 8888888888887755221 1123455555422 35677777777776653 555566677777788888
Q ss_pred CCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 047221 449 NNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481 (509)
Q Consensus 449 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 481 (509)
..++++|++++....+.. .-|...-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 888999999988877653 23444444444444
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.00 E-value=19 Score=33.43 Aligned_cols=147 Identities=15% Similarity=0.046 Sum_probs=72.5
Q ss_pred cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCH-----HHHHHH
Q 047221 228 LNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKV-----SYYNIL 302 (509)
Q Consensus 228 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~~~~l 302 (509)
+....+..... .. ..++..++..+|+........ +....-.++.+|...|+.+.|..++..++.+. .....-
T Consensus 133 ~~e~~~~~~~~-~~-~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~ 209 (304)
T COG3118 133 EEEEALAEAKE-LI-EAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ 209 (304)
T ss_pred HHHHHHHHhhh-hh-hccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34444444433 23 344477777777776654322 23444567777777777777777777775321 111223
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcC
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEP-ITLTYNYVLGVLCKNGQDADACELLEEMLGR-NCHPDAITYEIFIVYSCRVG 380 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g 380 (509)
|..+.+.....+..++-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.++ .---|...-..|+..+.-.|
T Consensus 210 i~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 210 IELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3344444444444444443333 23 3444445555555666666655554444333 11113334444444444444
No 273
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.00 E-value=1.5 Score=27.65 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHc
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMRQV 325 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (509)
|..+...|.+.|++++|+++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 274
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.93 E-value=14 Score=31.53 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=27.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047221 343 KNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
..|.+++.....+-+-..|-+.-...-.+|--+-.+.|++.+|...|.++...
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 44555555555554444443333444445555555566666666666655543
No 275
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.80 E-value=20 Score=33.27 Aligned_cols=72 Identities=10% Similarity=-0.001 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 047221 298 YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLG-----RNCHPDAITYE 370 (509)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 370 (509)
+.+.....|..+|.+.+|.++-++..... +.+...+-.++..++..|+--.|.+-++.+.+ .|+..|...++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34556678888899999998888887765 66778888888889998887777766666543 36666655443
No 276
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.41 E-value=8 Score=36.09 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=58.8
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047221 326 GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRN---CHP--DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR 400 (509)
Q Consensus 326 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 400 (509)
|......+...++..-....+++++...+-.++..- ..+ +.+++ +..|.+ -+.++++.++..=+.-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~---irlllk-y~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTW---IRLLLK-YDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHH---HHHHHc-cChHHHHHHHhCcchhccccc
Confidence 334445555555555555666777766666665431 111 12222 222222 245677777776677777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 401 LATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
..+++.+|+.+.+.+++.+|..+.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777777777666555543
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.06 E-value=1.1 Score=26.96 Aligned_cols=26 Identities=12% Similarity=-0.003 Sum_probs=22.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhh
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFN 222 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~ 222 (509)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999854
No 278
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.71 E-value=39 Score=35.32 Aligned_cols=179 Identities=13% Similarity=0.021 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHc--CCCHHHHHHHH----HH-HHhcCCccHHHHHHHHHHH-------cCCCCChHHHHHHHHHHHhcC-
Q 047221 281 LYEMAKYVIKKT--ERKVSYYNILI----KE-MCRRCDFKGPRDLLVEMRQ-------VGCEPITLTYNYVLGVLCKNG- 345 (509)
Q Consensus 281 ~~~~A~~~~~~m--~~~~~~~~~li----~~-~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~li~~~~~~g- 345 (509)
+...|.+.++.. ..+...-..+. .+ +....+.+.|+..|+...+ .| +......+-.+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 356777777775 23333322222 33 5566789999999988876 44 3345666777777643
Q ss_pred ----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 047221 346 ----QDADACELLEEMLGRNCHPDAITYEIFIVYSCR-VGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFI----FYR 416 (509)
Q Consensus 346 ----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 416 (509)
+.+.|..++...-+.|. |+...+-..+..... ..+...|.++|....+.| ....+-.+..+|.. ..+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVERN 379 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcCCC
Confidence 56678888888777764 344444333332222 245788999999888888 34444444444433 246
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 047221 417 YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLR 468 (509)
Q Consensus 417 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 468 (509)
.+.|..++++..++|........ ..+..+.. ++++.+.-.+..+.+.|.+
T Consensus 380 ~~~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 78888888888888722222221 22333333 7777777777777776544
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.48 E-value=16 Score=30.70 Aligned_cols=17 Identities=35% Similarity=0.351 Sum_probs=7.4
Q ss_pred hcCChHHHHHHHHHHHh
Q 047221 343 KNGQDADACELLEEMLG 359 (509)
Q Consensus 343 ~~g~~~~a~~~~~~m~~ 359 (509)
..|++.+|.++|+++.+
T Consensus 56 ~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 56 VRGDWDDALRLLRELEE 72 (160)
T ss_pred HhCCHHHHHHHHHHHhc
Confidence 44444444444444433
No 280
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.23 E-value=30 Score=33.56 Aligned_cols=318 Identities=11% Similarity=0.011 Sum_probs=191.4
Q ss_pred HHHHHHhcCCchHHHHHHHhhccCCCCccChhHHHHHHHHHhc--cCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHH-H
Q 047221 165 EILRVLNSEKVSALCFLKYMREIMPEFYKNSDICSLVIDNCGR--LDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLI-S 241 (509)
Q Consensus 165 ~ll~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~-~ 241 (509)
-+++.+...+..+...|..-++ ..-|.+|-.++.- .|+-..|.++-.+..+ -+.-|..-.--++.+- .
T Consensus 60 wlv~~iw~sP~t~~Ryfr~rKR--------drgyqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaa 130 (531)
T COG3898 60 WLVRSIWESPYTARRYFRERKR--------DRGYQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAA 130 (531)
T ss_pred HHHHHHHhCcHHHHHHHHHHHh--------hhHHHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHH
Confidence 3455556666677777777611 1167777777654 5778888877665431 1223333333333322 2
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHH
Q 047221 242 SKALTKKGIWRVVEVLNQVGGSCLVS--GVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGP 315 (509)
Q Consensus 242 ~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A 315 (509)
.-.|+.++|.+-|+.|... |... -...|.-.--+.|..+.|...-+.. +.-...+.+.+...|..|+|+.|
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHH
Confidence 3456699999999999852 2222 2334444455678888888776654 44567889999999999999999
Q ss_pred HHHHHHHHHcC-CCCChHH--HHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCChHHHHHH
Q 047221 316 RDLLVEMRQVG-CEPITLT--YNYVLGVLCK---NGQDADACELLEEMLGRNCHPDAIT-YEIFIVYSCRVGKFDVAFNF 388 (509)
Q Consensus 316 ~~~~~~m~~~g-~~p~~~t--~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~ 388 (509)
+++++.-+... +.+|..- -..|+.+-+. ..+...|...-.+..+ ..||..- -..--.++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 99998766543 4555432 2334433221 2334445554444433 4555432 22334678899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 047221 389 FNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK-YKSS-SNMLYSLLASLHDKNNNPVMAKNVLSEMMKNG 466 (509)
Q Consensus 389 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 466 (509)
++.+-+..-.|++ + ++-.+.+.|+ .+..-+++.... ..+| +...--.+..+-...|++..|..--+....
T Consensus 286 lE~aWK~ePHP~i--a--~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r-- 357 (531)
T COG3898 286 LETAWKAEPHPDI--A--LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR-- 357 (531)
T ss_pred HHHHHhcCCChHH--H--HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--
Confidence 9998877544442 2 2223445554 333333322221 2233 344555667777788888877766665544
Q ss_pred CCcCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCC
Q 047221 467 LRPNVSVYRRVLKHL-HTSHQEHMAKCLSSRYSSLSLGS 504 (509)
Q Consensus 467 ~~p~~~t~~~ll~~~-~~~g~~~~a~~~~~~m~~~~~~~ 504 (509)
..|....|..|.+.- ...|+-.++.+.+-+-.+.--.|
T Consensus 358 ~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 358 EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 678888887777755 34588888888877766544333
No 281
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.14 E-value=2.1 Score=26.96 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047221 334 YNYVLGVLCKNGQDADACELLEEMLGR 360 (509)
Q Consensus 334 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 360 (509)
+..+..+|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445555555555555555555544
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.88 E-value=17 Score=30.49 Aligned_cols=105 Identities=16% Similarity=0.057 Sum_probs=52.5
Q ss_pred HhcCCHHHHHHHHHHc---CCCH-HHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHH
Q 047221 277 SVLGLYEMAKYVIKKT---ERKV-SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACE 352 (509)
Q Consensus 277 ~~~g~~~~A~~~~~~m---~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~ 352 (509)
.+.++.++++.+++.+ .|.. ..-..-...+.+.|+|.+|..+|+++.+.+ |....-..|+..|.....-..=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHH
Confidence 3556777777777765 3432 222222344567788888888888877653 333333444444443322222222
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047221 353 LLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF 386 (509)
Q Consensus 353 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 386 (509)
.-+++.+.+-.|+.. .++..+....+...|.
T Consensus 99 ~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 99 YADEVLESGADPDAR---ALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence 233455554333332 3344444444444433
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.45 E-value=17 Score=30.04 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=8.9
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 047221 342 CKNGQDADACELLEEMLGR 360 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~ 360 (509)
...|++++|.++|+++.+.
T Consensus 55 i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 55 IARGNYDEAARILRELLSS 73 (153)
T ss_pred HHcCCHHHHHHHHHhhhcc
Confidence 3444444444444444443
No 284
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.32 E-value=26 Score=31.92 Aligned_cols=49 Identities=10% Similarity=0.005 Sum_probs=30.3
Q ss_pred HhcCCHHHHHHHHHHcC---C----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHc
Q 047221 277 SVLGLYEMAKYVIKKTE---R----KVSYYNILIKEMCRRCDFKGPRDLLVEMRQV 325 (509)
Q Consensus 277 ~~~g~~~~A~~~~~~m~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (509)
.+.|++++|.+.|+.+. | ...+--.++-++-+.+++++|+..+++....
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34577777777776662 1 1334445556666777777777777776654
No 285
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.04 E-value=14 Score=37.80 Aligned_cols=148 Identities=12% Similarity=-0.017 Sum_probs=83.8
Q ss_pred cCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047221 279 LGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358 (509)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 358 (509)
.|+++.|..++..++. ..-+.++.-+-+.|..++|+++ .+|...- .....+.|+++.|.++..+..
T Consensus 599 rrd~~~a~~vLp~I~k--~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e~~ 664 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK--EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVEAN 664 (794)
T ss_pred hccccccccccccCch--hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHhhc
Confidence 4555555555555542 2234455555555555555443 2332221 122346677777776655432
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047221 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNML 438 (509)
Q Consensus 359 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 438 (509)
+..-|..|-++..+.+++..|.+.|..... |..|+-.|...|+-+....+-....+.|. -|
T Consensus 665 ------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N--- 725 (794)
T KOG0276|consen 665 ------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-NN--- 725 (794)
T ss_pred ------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-cc---
Confidence 456677777777777887777777765432 45566666667776655555555544442 12
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q 047221 439 YSLLASLHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 439 ~~~li~~~~~~g~~~~a~~~~~~ 461 (509)
.-..+|...|+++++++++.+
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHh
Confidence 223345567888888777754
No 286
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=84.75 E-value=0.25 Score=41.01 Aligned_cols=120 Identities=13% Similarity=0.128 Sum_probs=70.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 047221 372 FIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNN 451 (509)
Q Consensus 372 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 451 (509)
+|..+.+.+.......+++.+...+..-+....+.++..|++.+..++..++++.. .+ .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~--~~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS--NN-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS--SS-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc--cc-----cCHHHHHHHHHhcch
Confidence 56666677778888888888887665566777888888888887777777777521 11 222346677777788
Q ss_pred hHHHHHHHHHHHHCC--CC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 452 PVMAKNVLSEMMKNG--LR--PNVSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 452 ~~~a~~~~~~m~~~g--~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
+++|.-++.++.... +. -+..-+...+..+.+.++.+....+.+...
T Consensus 86 ~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l 136 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCL 136 (143)
T ss_dssp HHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHC
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 878777777654321 11 122233333444445555444444444433
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.67 E-value=2.5 Score=24.62 Aligned_cols=27 Identities=11% Similarity=-0.031 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 438 LYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 438 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 344455555555555555555555544
No 288
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.31 E-value=11 Score=32.91 Aligned_cols=78 Identities=12% Similarity=0.051 Sum_probs=50.8
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHhcCCHH
Q 047221 412 FIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN---GLRPNVSVYRRVLKHLHTSHQEH 488 (509)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~ 488 (509)
.+.|+ +.|.+.|-.+...+..-+...-..|..-|. ..+.++++.++.+..+. +-.+|...+.+|...+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34344 667777777766665555555554444444 56677777777777653 33667778888888888888877
Q ss_pred HHH
Q 047221 489 MAK 491 (509)
Q Consensus 489 ~a~ 491 (509)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 764
No 289
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.78 E-value=42 Score=32.22 Aligned_cols=222 Identities=10% Similarity=-0.017 Sum_probs=123.1
Q ss_pred hccCCHHHHHHHHHHhhhCC--CccCHHHHHHHHHHHHhccCCHHHHHHHH----HHHHHcC-CCCCHHHHHHHHHHHHh
Q 047221 206 GRLDDYETMRQLLNDFNVYQ--VCLNEKAFGFLPVLISSKALTKKGIWRVV----EVLNQVG-GSCLVSGVRALIEMFSV 278 (509)
Q Consensus 206 ~~~g~~~~A~~l~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~~a~~~~----~~m~~~g-~~~~~~~~~~li~~~~~ 278 (509)
....+.+.|+..+.+-..+- ..-.-.++..+..+... .+..++++..- +...+.. -.--...|-.+..++-+
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~-~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSE-MGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888765441 11122344444443332 22244433321 1111100 00001223344444444
Q ss_pred cCCHHHHHHHHHHc---C---C--C-HHHHHHHHHHHHhcCCccHHHHHHHHHHHcC-----CCCChHHHHHHHHHHHhc
Q 047221 279 LGLYEMAKYVIKKT---E---R--K-VSYYNILIKEMCRRCDFKGPRDLLVEMRQVG-----CEPITLTYNYVLGVLCKN 344 (509)
Q Consensus 279 ~g~~~~A~~~~~~m---~---~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~t~~~li~~~~~~ 344 (509)
.-++..++.+-+.- + + + ...--+|-.++.-.+.++++++.|+...+-- -......|..|-+.|++.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44444444443321 1 1 1 1223346667777788999999998765421 122356789999999999
Q ss_pred CChHHHHHHHHHHHh----CCCCCCHHHHHHH-----HHHHHHcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHH
Q 047221 345 GQDADACELLEEMLG----RNCHPDAITYEIF-----IVYSCRVGKFDVAFNFFNQMVK----RGLQP-RLATHAAFIKG 410 (509)
Q Consensus 345 g~~~~a~~~~~~m~~----~g~~p~~~~~~~l-----i~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~ 410 (509)
.++++|.-......+ -|+..=..-|..+ --++...|+..+|.+.-++..+ .|-.+ -......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999998877665433 2322112234443 3466778998888888877643 35222 12334567788
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 047221 411 YFIFYRYEDAYKYVVLSA 428 (509)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~ 428 (509)
|...|+.|.|+.-|+...
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 899999999988887643
No 290
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.70 E-value=9.4 Score=28.88 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=21.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 350 ACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 350 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
+.+-++.+......|+.....+.+++|.+.+++..|.++|+-++
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33344444444445555555555555555555555555554443
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.31 E-value=28 Score=29.73 Aligned_cols=123 Identities=12% Similarity=0.051 Sum_probs=54.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHH--HHHHcCCH
Q 047221 342 CKNGQDADACELLEEMLGRNCHPDAIT-YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLA-THAAFIK--GYFIFYRY 417 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~--~~~~~g~~ 417 (509)
++.+..++|+.-|.++.+.|...-... --.+-....+.|+...|...|+++-...-.|-.. -..-|=. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344555555555555555543321111 1111223344555666666666555443333222 1111111 12344555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 418 EDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 418 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
++...-.+-+...+-..-...-..|.-+-.+.|++.+|.+.|..+.+
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555554444333333333344444445556666666666665554
No 292
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.25 E-value=3.1 Score=25.41 Aligned_cols=28 Identities=18% Similarity=0.086 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 437 MLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 437 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
.+++.|...|...|++++|++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566666666666777777666666543
No 293
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.58 E-value=9.7 Score=28.80 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=47.4
Q ss_pred cHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047221 313 KGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIV 374 (509)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 374 (509)
-++.+-++.+....+.|+.....+.+.+|-+.+++..|.++|+-.+.. +..+...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 356677777777888999999999999999999999999999977644 2224456666654
No 294
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.53 E-value=2.8 Score=25.67 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhh
Q 047221 196 DICSLVIDNCGRLDDYETMRQLLNDFNV 223 (509)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 223 (509)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4889999999999999999999998754
No 295
>PRK11906 transcriptional regulator; Provisional
Probab=82.32 E-value=57 Score=32.62 Aligned_cols=127 Identities=6% Similarity=0.032 Sum_probs=61.9
Q ss_pred hHH--HHHHHHHhccC-----CHHHHHHHHHHhhh-CCCccCH-HHHHHHHHHHHh--------ccCCHHHHHHHHHHHH
Q 047221 196 DIC--SLVIDNCGRLD-----DYETMRQLLNDFNV-YQVCLNE-KAFGFLPVLISS--------KALTKKGIWRVVEVLN 258 (509)
Q Consensus 196 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~-~~~~p~~-~~~~~ll~~~~~--------~~~~~~~a~~~~~~m~ 258 (509)
..| ...+.+..... ..+.|..+|.+... ..+.|+- ..|..+-.+++. ......+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 366 66666655522 35677888888762 2334442 233322221111 1122334444444444
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCC-HHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 047221 259 QVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERK-VSYYNILIKEMCRRCDFKGPRDLLVEMR 323 (509)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (509)
+.+ +.|..+...+..+..-.|+++.|..+|++. .|| ..+|....-...-.|+.++|.+.+++..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 443 344555555555555555566666666653 232 3333333333444556666666665533
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.99 E-value=25 Score=35.99 Aligned_cols=132 Identities=13% Similarity=0.086 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 047221 267 SGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ 346 (509)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 346 (509)
..-+.++..+-+.|..+.|..+- +|.. .-.....+.|+++.|.++..+.. +..-|..|-++..+.|+
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s----~D~d---~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~ 681 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELS----TDPD---QRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGE 681 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcC----CChh---hhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhccc
Confidence 34567788888888888887653 2221 11233456788888888876654 45779999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047221 347 DADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVL 426 (509)
Q Consensus 347 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (509)
+..|.+.|..... |..|+-.+...|+.+....+-....+.|. .|...-+|...|+++++.+++..
T Consensus 682 l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 682 LPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred chhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 9999999887654 45677788888887766666666666652 34455677888999999998854
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.44 E-value=18 Score=31.64 Aligned_cols=72 Identities=11% Similarity=0.032 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 047221 348 ADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR---GLQPRLATHAAFIKGYFIFYRYEDA 420 (509)
Q Consensus 348 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A 420 (509)
+.|.+.|-.+...+.--+.....+|..-|. ..+.+++..++....+. +-.+|...+.+|+..|.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 345555555555544434444444333333 34455555555544432 2244555555555555555555554
No 298
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.94 E-value=4.3 Score=23.45 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=11.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 439 YSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 439 ~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
|..+...+...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444455555555555554443
No 299
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.93 E-value=59 Score=31.89 Aligned_cols=161 Identities=7% Similarity=-0.040 Sum_probs=100.0
Q ss_pred cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHc---CCC-------
Q 047221 228 LNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIE--MFSVLGLYEMAKYVIKKT---ERK------- 295 (509)
Q Consensus 228 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m---~~~------- 295 (509)
|.-.+|..+-.-|+...++.++|.++--...+.. ..+. +...++ ++--.++.+.|..-|++- .|+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchh--HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhH
Confidence 4455666666666666666777777666655533 1111 222222 233346777777777763 333
Q ss_pred ------HHHHHHHHHHHHhcCCccHHHHHHHHHHHc---CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047221 296 ------VSYYNILIKEMCRRCDFKGPRDLLVEMRQV---GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDA 366 (509)
Q Consensus 296 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 366 (509)
...|..=.+-..+.|++.+|.+.|.+.... .++++...|-....+..+.|+.++|+.--++..+- |.
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~ 318 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DS 318 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CH
Confidence 223444445567788899999999888754 35566777777777788889999988877766654 43
Q ss_pred H-HHHHHH--HHHHHcCChHHHHHHHHHHHHC
Q 047221 367 I-TYEIFI--VYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 367 ~-~~~~li--~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
. ....+. .++.-.++|++|.+-|++..+.
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3 222222 3444557888888888877655
No 300
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.32 E-value=24 Score=27.05 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047221 349 DACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK 394 (509)
Q Consensus 349 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 394 (509)
+..+-+..+....+.|+.....+.+.+|.+.+++..|.++|+-++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555556666666666666666666666666666665543
No 301
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=80.05 E-value=2.7 Score=24.85 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHH
Q 047221 265 LVSGVRALIEMFSVLGLYEMAK 286 (509)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~ 286 (509)
+..+|+.|...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 3444555555555555555443
No 302
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.91 E-value=44 Score=29.75 Aligned_cols=175 Identities=13% Similarity=0.005 Sum_probs=91.5
Q ss_pred cCCHHHHHHHHHHc---CCC-HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHH
Q 047221 279 LGLYEMAKYVIKKT---ERK-VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELL 354 (509)
Q Consensus 279 ~g~~~~A~~~~~~m---~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~ 354 (509)
.|-+..|+-=|.+. .|+ ...||.|.--+...|+++.|.+.|+...+..-.-+-...|.-| ++.-.|+++.|.+=|
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~ 156 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDL 156 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHH
Confidence 34445555445442 344 5778888888888888888888888887654221211122222 233457788777766
Q ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCC
Q 047221 355 EEMLGRNC-HPDAITYEIFIVYSCRVGKFDVAFNFFN-QMVKRGLQPRLATHAAFIKG-YFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 355 ~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~ 431 (509)
-..-+... .|--..|--++ -+.-++.+|..-+. +.... |..-|..-|-. |...=..+. +++++....
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~a 226 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEET---LMERLKADA 226 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHH---HHHHHHhhc
Confidence 66555421 12122232222 12234555554333 22222 44444433333 322222222 233322211
Q ss_pred CCC-------CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 432 KSS-------SNMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 432 ~~p-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
.- -..||-.+...+...|+.++|..+|+-.+..
T Consensus 227 -~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 227 -TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred -cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11 1247778888888899999999999877654
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=79.53 E-value=5.1 Score=23.25 Aligned_cols=31 Identities=13% Similarity=-0.047 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 472 SVYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 472 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
.+|..+..+|...|++++|++.+++..+..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4678888999999999999999999887654
No 304
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.23 E-value=0.59 Score=38.77 Aligned_cols=128 Identities=12% Similarity=0.107 Sum_probs=72.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047221 337 VLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416 (509)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 416 (509)
++..+.+.+..+...++++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45556667777777777777776665566777888888888887777777776621 11223456666667777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 047221 417 YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQ 486 (509)
Q Consensus 417 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 486 (509)
+++|..++.++....-... .+...++++.|+++..+. ++...|..+++.|...+.
T Consensus 86 ~~~a~~Ly~~~~~~~~al~---------i~~~~~~~~~a~e~~~~~------~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEALE---------ILHKLKDYEEAIEYAKKV------DDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHHHHCCTTHTTCSS---------TSSSTHCSCCCTTTGGGC------SSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHHHHcccHHHHHH---------HHHHHccHHHHHHHHHhc------CcHHHHHHHHHHHHhcCc
Confidence 7777766655432211111 012334444444333322 345667777776665543
No 305
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.21 E-value=48 Score=29.85 Aligned_cols=29 Identities=14% Similarity=0.397 Sum_probs=20.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHH
Q 047221 376 SCRVGKFDVAFNFFNQMVKRGLQPRLATH 404 (509)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 404 (509)
-+..+++.+|.++|+++....+.-+..-|
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKy 192 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKY 192 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHh
Confidence 35668899999999998877554444333
No 306
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=79.19 E-value=34 Score=28.33 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047221 329 PITLTYNYVLGVLCKNGQ-DADACELLEEMLGRNCHPDAITYEIFIVYSCRV 379 (509)
Q Consensus 329 p~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 379 (509)
.+..+|++++.+..+..- ---+..+|.-|++.+.+++..-|..||.++.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 345566667666655554 344666777777666677777777777766554
No 307
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=78.88 E-value=56 Score=30.45 Aligned_cols=64 Identities=14% Similarity=0.027 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047221 361 NCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR-GLQPRLATHAAFIKGYFIFYRYEDAYKYV 424 (509)
Q Consensus 361 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 424 (509)
|..++..+...+|..+++.+++.+-.++++.-... +..-|...|..+|..-...|+..-...+.
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 34455555566666666666666666666554433 33445556666666666666655555544
No 308
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.78 E-value=65 Score=31.07 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047221 366 AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP---RLATHAAFIKGYFIFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (509)
..+|..+...+.+.|.++.|...+..+...+... +....-.-.......|+-++|...++....
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455556666666666666666666655432111 122222233444555666666666655554
No 309
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=78.22 E-value=64 Score=30.74 Aligned_cols=145 Identities=15% Similarity=0.039 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047221 347 DADACELLEEMLGRNC----HPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYK 422 (509)
Q Consensus 347 ~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 422 (509)
.+.|.+.|+.....+. ..+......++....+.|..++-..+++..... .+...-..++.+.+...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5678888888777522 345566667777777888866655665555543 267777888888888888888888
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhCCCh--HHHHHHHHH----HHHCCCCcCHHHHHHHHHHH----HhcCCHHHHH
Q 047221 423 YVVLSADKY-KSSSNMLYSLLASLHDKNNNP--VMAKNVLSE----MMKNGLRPNVSVYRRVLKHL----HTSHQEHMAK 491 (509)
Q Consensus 423 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~----m~~~g~~p~~~t~~~ll~~~----~~~g~~~~a~ 491 (509)
+++.....+ +.+.. . ..++.++...+.. +.+.+.+.+ +.+ .+..+......++..+ +.....++..
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~ 299 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKENWDAIIK-KFGTNSSALSRVIKSFAGNFSTEEQLDELE 299 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHC-HC-TTSHCCHHHHHCCCTT--SHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHHHHHHHHH-HhcCCChHHHHHHHHHhccCCCHHHHHHHH
Confidence 888888764 44433 2 3455555534433 666666543 322 2333332444555443 3334445555
Q ss_pred HHHHHH
Q 047221 492 CLSSRY 497 (509)
Q Consensus 492 ~~~~~m 497 (509)
++++.-
T Consensus 300 ~f~~~~ 305 (324)
T PF11838_consen 300 EFFEDK 305 (324)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 555433
No 310
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.86 E-value=87 Score=33.23 Aligned_cols=219 Identities=16% Similarity=0.102 Sum_probs=87.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccC------CHHHHHHHHHHHHHcCCCCCHH---
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKAL------TKKGIWRVVEVLNQVGGSCLVS--- 267 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~------~~~~a~~~~~~m~~~g~~~~~~--- 267 (509)
.| ++|-.|.|+|++++|.++..+... ........|...+..+....+ ..+....-+++..+.....|.+
T Consensus 114 ~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 114 IW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp HH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 56 677788999999999999966543 344455667777776655322 1234444555555443322332
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------ccHHHHHHHHHHHcCCCCChHHHHH
Q 047221 268 GVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCD-----------FKGPRDLLVEMRQVGCEPITLTYNY 336 (509)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~g~~p~~~t~~~ 336 (509)
+|..+ ++|.-...-. ..+-.++.-|--+=-.+++... +++..+.+.+..+.-+.+ ....-.
T Consensus 192 vY~il----g~cD~~~~~~---~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge~~F~~-~~~p~~ 263 (613)
T PF04097_consen 192 VYKIL----GRCDLSRRHL---PEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGESHFNA-GSNPLL 263 (613)
T ss_dssp HHHHH----HT--CCC-S----TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-GGGCTT-------
T ss_pred HHHHH----hcCCccccch---HHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhchhhccc-chhHHH
Confidence 22222 2222111000 0011111111111111111111 111111222222222222 111112
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHc-
Q 047221 337 VLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG-LQPRLATHAAFIKGYFIF- 414 (509)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~- 414 (509)
....+.-.|+++.|.+.+-+ ..+...|.+++...+.-|.-.+-.+... ..+.... -.|...-+..||..|.+.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 23344567888888888776 2233446666666555443222222211 2222111 011125577777777763
Q ss_pred --CCHHHHHHHHHHHHhC
Q 047221 415 --YRYEDAYKYVVLSADK 430 (509)
Q Consensus 415 --g~~~~A~~~~~~m~~~ 430 (509)
.+..+|.++|--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 5677777777666554
No 311
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.51 E-value=27 Score=32.29 Aligned_cols=80 Identities=13% Similarity=0.047 Sum_probs=37.6
Q ss_pred HHHHHhcCCHHHHHHHHHH-------cCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHh--
Q 047221 273 IEMFSVLGLYEMAKYVIKK-------TERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK-- 343 (509)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~-------m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-- 343 (509)
|.+++..+++.++....-+ +++. ....-|-.|.+.+....+.++-..-.+..-.-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 5666666666666554322 1222 2223334455555555555555544433212223335555544443
Q ss_pred ---cCChHHHHHHH
Q 047221 344 ---NGQDADACELL 354 (509)
Q Consensus 344 ---~g~~~~a~~~~ 354 (509)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555555544
No 312
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=77.10 E-value=48 Score=28.69 Aligned_cols=199 Identities=14% Similarity=0.076 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHc-CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 047221 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQV-GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIV- 374 (509)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~- 374 (509)
..+......+...+.+..+...+...... ........+......+...++++.+.+.+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 44445555555555555555555554431 1233344444444555555555555555555554322221 11111111
Q ss_pred HHHHcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 047221 375 YSCRVGKFDVAFNFFNQMVKRGL--QPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNP 452 (509)
Q Consensus 375 ~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 452 (509)
.+...|+++.|...+.+...... ......+......+...++.+.|...+..............+..+...+...++.
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 45555555555555555533110 0122333333333445555555555555554432211234444555555555555
Q ss_pred HHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 453 VMAKNVLSEMMKNGLRPN-VSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 453 ~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
+.|...+...... .|+ ...+..+...+...|..+++...+.+..
T Consensus 219 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 219 EEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555555542 222 2223333333334444555555554444
No 313
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.94 E-value=21 Score=31.15 Aligned_cols=90 Identities=8% Similarity=0.022 Sum_probs=60.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047221 374 VYSCRVGKFDVAFNFFNQMVKRGLQPR-----LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDK 448 (509)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 448 (509)
.-+.++|++++|..-|.+.+.. +++. .+.|..-..++.+.+.++.|..-.....+.+.. ......--..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 3467889999999999888876 2222 233555556777888888888777666655421 11122223457778
Q ss_pred CCChHHHHHHHHHHHHC
Q 047221 449 NNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 449 ~g~~~~a~~~~~~m~~~ 465 (509)
...+++|++-|+.+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88888898888888774
No 314
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=76.76 E-value=4.3 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=17.2
Q ss_pred CCCHHHHHHHHHHHHhcCCccHHH
Q 047221 293 ERKVSYYNILIKEMCRRCDFKGPR 316 (509)
Q Consensus 293 ~~~~~~~~~li~~~~~~g~~~~A~ 316 (509)
|.|..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 456777777777777777777764
No 315
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.35 E-value=1e+02 Score=32.17 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhhhCCCccCHHHHHHHHHHH-HhccCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC--
Q 047221 211 YETMRQLLNDFNVYQVCLNEKAFGFLPVLI-SSKALTKKGIWRVVEVLNQ-------VGGSCLVSGVRALIEMFSVLG-- 280 (509)
Q Consensus 211 ~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g-- 280 (509)
...|.+.++.....|..-.......+.... .....+.+.|..+++...+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 456788888777666322222222222211 2244558888888888876 44 3334566777777754
Q ss_pred ---CHHHHHHHHHHc----CCCHHHHHHHHHHHHh---cCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHH--hcCChH
Q 047221 281 ---LYEMAKYVIKKT----ERKVSYYNILIKEMCR---RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLC--KNGQDA 348 (509)
Q Consensus 281 ---~~~~A~~~~~~m----~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~--~~g~~~ 348 (509)
+.+.|..++.+. .++... .+...|-. ..+...|.++|...-+.|. ++..-+..++...+ -..+.+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~~a~~--~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNPDAQY--LLGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCchHHH--HHHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHH
Confidence 556688887764 233222 22222222 2456788888888888773 33333333332222 234677
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HH----cCCHHHHH
Q 047221 349 DACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY---FI----FYRYEDAY 421 (509)
Q Consensus 349 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~----~g~~~~A~ 421 (509)
.|..+++..-+.|........ ..+..+.. ++.+.+.-.+..+.+.|.+--...-..++... .. ..+.+.+.
T Consensus 382 ~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~ 459 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAF 459 (552)
T ss_pred HHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHH
Confidence 888888888887722222222 22333333 67777777777666665332111111111111 11 12445555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhC----CChHHHHHHHHHHHHCC
Q 047221 422 KYVVLSADKYKSSSNMLYSLLASLHDKN----NNPVMAKNVLSEMMKNG 466 (509)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g 466 (509)
..+.+....| +......|-..|... .+++.|...+.....++
T Consensus 460 ~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 460 SLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred HHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh
Confidence 5555555444 333344444433322 23555665555555444
No 316
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=76.08 E-value=7.3 Score=22.40 Aligned_cols=32 Identities=6% Similarity=-0.148 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 472 SVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 472 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
..+..+-..+.+.|++++|++.+++..+..++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35667788899999999999999998876543
No 317
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.05 E-value=44 Score=27.68 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=17.4
Q ss_pred HHhCCCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHH
Q 047221 357 MLGRNCHPDAI--TYEIFIVYSCRVGKFDVAFNFFNQM 392 (509)
Q Consensus 357 m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m 392 (509)
|.+.+..++.. ..|+++.-....+.......+++.+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l 65 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHL 65 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 34344444432 2455555555555555555555554
No 318
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=75.96 E-value=70 Score=30.01 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCChHHH
Q 047221 368 TYEIFIVYSCRVGKFDVA 385 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a 385 (509)
+|..|+.++|..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 466666666666665544
No 319
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.30 E-value=63 Score=29.15 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=8.4
Q ss_pred hCCChHHHHHHHHHHHH
Q 047221 448 KNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 448 ~~g~~~~a~~~~~~m~~ 464 (509)
..+++.+|+++|++...
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555443
No 320
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.22 E-value=35 Score=26.13 Aligned_cols=59 Identities=17% Similarity=0.098 Sum_probs=33.6
Q ss_pred HHHHHhcCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHH
Q 047221 273 IEMFSVLGLYEMAKYVIKKT-ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY 334 (509)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 334 (509)
+..+.+.|++++|..+.+.+ -||...|-+|-. .+.|..+++..-+.+|...| .|...+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34455667777777666665 366666655533 34555555555666666555 4444444
No 321
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=74.47 E-value=77 Score=29.76 Aligned_cols=18 Identities=11% Similarity=0.143 Sum_probs=11.9
Q ss_pred HHHHHHHHHHhCCChHHH
Q 047221 438 LYSLLASLHDKNNNPVMA 455 (509)
Q Consensus 438 ~~~~li~~~~~~g~~~~a 455 (509)
+|.-|+.++|..|+.+-.
T Consensus 323 ~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELE 340 (412)
T ss_pred hhhHHHHHHhcCChHHHH
Confidence 466677777777776544
No 322
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=74.16 E-value=64 Score=28.73 Aligned_cols=170 Identities=13% Similarity=0.023 Sum_probs=93.3
Q ss_pred HHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 047221 181 LKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQV 260 (509)
Q Consensus 181 ~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~ 260 (509)
|.+...+.|+.. .+||.|--.+...|+++.|.+.|+...+.+..-+-...|--|..+ -+|++..|.+-+...-..
T Consensus 88 ftQaLai~P~m~---~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y--Y~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 88 FSQALAIRPDMP---EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY--YGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred hhhhhhcCCCcH---HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee--ecCchHhhHHHHHHHHhc
Confidence 444445566543 488999888999999999999999987664322222333333322 356677777655554432
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCC------CCCh
Q 047221 261 G-GSCLVSGVRALIEMFSVLGLYEMAKYVIKK--TERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC------EPIT 331 (509)
Q Consensus 261 g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~ 331 (509)
. -.|-...|--++ -..-+..+|..-+.+ +..|..-|...|-.|.-. ++ ....++++.....- +.=.
T Consensus 163 D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLg-ki-S~e~l~~~~~a~a~~n~~~Ae~LT 237 (297)
T COG4785 163 DPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLG-KI-SEETLMERLKADATDNTSLAEHLT 237 (297)
T ss_pred CCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHh-hc-cHHHHHHHHHhhccchHHHHHHHH
Confidence 2 223222221111 123356666554433 355656666555444322 21 12233444433211 0113
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGR 360 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 360 (509)
.||--+..-|...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 56677777777888888888888766654
No 323
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.54 E-value=1.4e+02 Score=32.43 Aligned_cols=219 Identities=11% Similarity=0.025 Sum_probs=110.0
Q ss_pred hcCCHHHHHHHHHHc----C-CC-------HHHHHHHHHH-HHhcCCccHHHHHHHHHHHc----CCCCChHHHHHHHHH
Q 047221 278 VLGLYEMAKYVIKKT----E-RK-------VSYYNILIKE-MCRRCDFKGPRDLLVEMRQV----GCEPITLTYNYVLGV 340 (509)
Q Consensus 278 ~~g~~~~A~~~~~~m----~-~~-------~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~li~~ 340 (509)
..+++++|..+..+. + ++ ...|+++-.. ....|++++|.++-+..... -..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 456788888877764 1 11 2345555433 23357778888877765543 223455666777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH-----HHHHHcCCh--HHHHHHHHHHHHC--CC----CCCHHHHHHH
Q 047221 341 LCKNGQDADACELLEEMLGRNCHPDAITYEIFI-----VYSCRVGKF--DVAFNFFNQMVKR--GL----QPRLATHAAF 407 (509)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~g~~--~~a~~~~~~m~~~--g~----~p~~~~~~~l 407 (509)
..-.|++++|..+..+..+.--.-++..+.... ..+-..|+. .+.+..|...... +- .+-..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 777888888888777655542222333332222 123344532 2222333322211 00 1123445555
Q ss_pred HHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhCCChHHHHHHHHHHHHCC----CCcCHHHHHHHHHH
Q 047221 408 IKGYFIFY-RYEDAYKYVVLSADKYKSSSNMLY--SLLASLHDKNNNPVMAKNVLSEMMKNG----LRPNVSVYRRVLKH 480 (509)
Q Consensus 408 i~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~t~~~ll~~ 480 (509)
..++.+.. ...+|..-++--......|-...+ ..|+..+...|+.++|...++++.... ..++...-...++.
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~ 666 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKL 666 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhH
Confidence 55555521 112222222222222222222222 256777778888888888888876632 23333333333332
Q ss_pred H--HhcCCHHHHHHHHHH
Q 047221 481 L--HTSHQEHMAKCLSSR 496 (509)
Q Consensus 481 ~--~~~g~~~~a~~~~~~ 496 (509)
. ...|+.+++.....+
T Consensus 667 ~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 667 ILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcccCCHHHHHHHHHh
Confidence 2 356776666655444
No 324
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.46 E-value=7.6 Score=21.16 Aligned_cols=22 Identities=18% Similarity=0.135 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 047221 269 VRALIEMFSVLGLYEMAKYVIK 290 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~ 290 (509)
...+...+...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3455666666777777766654
No 325
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=72.41 E-value=42 Score=25.81 Aligned_cols=45 Identities=9% Similarity=-0.036 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q 047221 248 KGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT 292 (509)
Q Consensus 248 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 292 (509)
-+..+-+..+......|+..+..+.+.+|.+.+++..|.++|+.+
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 355566666667778888888888888888888888888888876
No 326
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.29 E-value=1.4e+02 Score=31.84 Aligned_cols=230 Identities=10% Similarity=-0.066 Sum_probs=112.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHH
Q 047221 263 SCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338 (509)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 338 (509)
+.+...-.....+....|+.++|....+.+ ......++.++..+.+.|.+.... +..+|...=...+...-..+.
T Consensus 126 p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~ 204 (644)
T PRK11619 126 PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLA 204 (644)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHH
Confidence 445555567777777788877666655554 344667777888887777655433 333333210011111111121
Q ss_pred HHHHhcCChHHHHHHHHHHHh---------CCCCCCHHHHHHHHHHHH--HcCChHHHHHHHHHHHHCC-CCCC--HHHH
Q 047221 339 GVLCKNGQDADACELLEEMLG---------RNCHPDAITYEIFIVYSC--RVGKFDVAFNFFNQMVKRG-LQPR--LATH 404 (509)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~m~~---------~g~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g-~~p~--~~~~ 404 (509)
... . .+.....+.+..+.+ ..+.++...-..++-++. ...+.+.|..++....... ..+. ...+
T Consensus 205 ~~l-~-~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~ 282 (644)
T PRK11619 205 KQL-P-ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELR 282 (644)
T ss_pred Hhc-C-hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 111 0 000000001111110 011223322221222222 2345688888888764442 2222 1223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 047221 405 AAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTS 484 (509)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 484 (509)
..+....+..+...+|...++....... +......-+..-.+.++++.+...+..|....- -...-.--+.+++...
T Consensus 283 ~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~ 359 (644)
T PRK11619 283 DIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQ 359 (644)
T ss_pred HHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHc
Confidence 3443333333224566666655433322 333334444455588899888888888755322 2223333456676678
Q ss_pred CCHHHHHHHHHHHH
Q 047221 485 HQEHMAKCLSSRYS 498 (509)
Q Consensus 485 g~~~~a~~~~~~m~ 498 (509)
|+.++|...|+.+.
T Consensus 360 g~~~~A~~~~~~~a 373 (644)
T PRK11619 360 GRKAEAEEILRQLM 373 (644)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999888874
No 327
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.11 E-value=82 Score=29.01 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=26.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-----CC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047221 336 YVLGVLCKNGQDADACELLEEMLGR-----NC------HPDAITYEIFIVYSCRVGKFDVAFNFFNQM 392 (509)
Q Consensus 336 ~li~~~~~~g~~~~a~~~~~~m~~~-----g~------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 392 (509)
-|...|...|.+.+..++++++.+. |- .--...|..=|..|....+-..-..++++.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqa 217 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQA 217 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHH
Confidence 3444445555555555555554432 00 001234555555555555555555555543
No 328
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=71.42 E-value=60 Score=27.98 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 452 PVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 452 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
+++|.+.|++..+ ..|+..+|..-+.... +|-++..++.+.+..
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHHhh
Confidence 3444455555444 5677777777766653 355566666555443
No 329
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.37 E-value=59 Score=27.04 Aligned_cols=47 Identities=9% Similarity=-0.051 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHc---CCCH-HHHHHHHHHHHhcCCccHHHHHHHHHHHc
Q 047221 279 LGLYEMAKYVIKKT---ERKV-SYYNILIKEMCRRCDFKGPRDLLVEMRQV 325 (509)
Q Consensus 279 ~g~~~~A~~~~~~m---~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (509)
.++.++++.+++.| .|+. ..-..-...+...|+|++|..+|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 45555555555554 2221 11111122344556666666666666554
No 330
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=71.16 E-value=1.1e+02 Score=29.99 Aligned_cols=274 Identities=15% Similarity=0.131 Sum_probs=168.4
Q ss_pred cCCchHHHHHHHhh-ccCCCCccChhHHHHHHHHH--hccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHH---HHhccC
Q 047221 172 SEKVSALCFLKYMR-EIMPEFYKNSDICSLVIDNC--GRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVL---ISSKAL 245 (509)
Q Consensus 172 ~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~---~~~~~~ 245 (509)
..+..|.+.-.... -+..+.. ..-.|+.+- .-.|+++.|.+-|+-|... ..|-..=+.+ -....|
T Consensus 98 Gda~lARkmt~~~~~llssDqe----pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGLRgLyleAqr~G 168 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQE----PLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGLRGLYLEAQRLG 168 (531)
T ss_pred CchHHHHHHHHHHHhhhhccch----HHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhHHHHHHHHHhcc
Confidence 33346776666662 2333333 555555543 3469999999999999753 3332222221 234566
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc------CCCHH--HHHHHHHHHHh---cCCccH
Q 047221 246 TKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT------ERKVS--YYNILIKEMCR---RCDFKG 314 (509)
Q Consensus 246 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~~~--~~~~li~~~~~---~g~~~~ 314 (509)
..+.|.++-+...+.- +.-...+.+.+...+..|+++.|+++++.- ++++. .-..|+.+-+. ..+...
T Consensus 169 areaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~ 247 (531)
T COG3898 169 AREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPAS 247 (531)
T ss_pred cHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHH
Confidence 6777877777766533 333577889999999999999999999873 45532 12223322111 123444
Q ss_pred HHHHHHHHHHcCCCCChHHHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 315 PRDLLVEMRQVGCEPITLTYN-YVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 315 A~~~~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
|.+.-.+.. .+.||.+--. .-..++.+.|++.++-++++.+-+..-.|+.. .+-.+.+.|+. +.+-++...
T Consensus 248 Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~ 319 (531)
T COG3898 248 ARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAK 319 (531)
T ss_pred HHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHH
Confidence 444444433 3466654432 34567899999999999999999986666542 22234455543 333333322
Q ss_pred HC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hCCChHHHHHHHHHHHHC
Q 047221 394 KR-GLQP-RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHD-KNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 394 ~~-g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~ 465 (509)
+. .++| +..+--.+..+-...|++..|..--+.... ..|....|..|...-. ..|+-.++...+-+....
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 11 2344 456666777888888998888766655443 3677777877776554 459999999888887653
No 331
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.99 E-value=64 Score=29.92 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH--
Q 047221 301 ILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR-- 378 (509)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 378 (509)
.=|.+++..++|.+++...-+--+.--+.-....-.-|-.|.+.|....+.++-..-.+.--.-+...|.++...|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 347899999999999887665544322223344455555689999999998888877765333345568888777765
Q ss_pred ---cCChHHHHHHH
Q 047221 379 ---VGKFDVAFNFF 389 (509)
Q Consensus 379 ---~g~~~~a~~~~ 389 (509)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 49999998877
No 332
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.65 E-value=12 Score=21.55 Aligned_cols=27 Identities=11% Similarity=0.132 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 438 LYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 438 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555666666666666666666544
No 333
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.49 E-value=45 Score=25.53 Aligned_cols=51 Identities=10% Similarity=-0.018 Sum_probs=27.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 047221 410 GYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNG 466 (509)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 466 (509)
.+...|++++|..+.+.+ ..||...|.+|... +.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 345556666666665333 35566655555443 5555555555555555544
No 334
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.15 E-value=37 Score=30.20 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 047221 301 ILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355 (509)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 355 (509)
.-|+.+.+.+.+.+|+.+.++-.+.. +.|..+-..++..+|-.|++++|..-++
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHH
Confidence 33444445555555555554444332 2333344444555555555555544443
No 335
>PRK09687 putative lyase; Provisional
Probab=68.38 E-value=1.1e+02 Score=28.81 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 314 GPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 314 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
++...+..+.. .+|..+-...+.++++.|+. .|...+-...+.+ + .....+.++...|+. +|...+.++.
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 44444444442 33444445555555555553 2333333333332 1 122344555555553 4555555544
Q ss_pred H
Q 047221 394 K 394 (509)
Q Consensus 394 ~ 394 (509)
+
T Consensus 262 ~ 262 (280)
T PRK09687 262 Y 262 (280)
T ss_pred h
Confidence 3
No 336
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=68.27 E-value=15 Score=25.37 Aligned_cols=29 Identities=17% Similarity=-0.031 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 470 NVSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 470 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
|..--..+|.+|...|++++|.++++++.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444555556666666666666555544
No 337
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.10 E-value=10 Score=24.05 Aligned_cols=24 Identities=8% Similarity=-0.115 Sum_probs=14.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 047221 477 VLKHLHTSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 477 ll~~~~~~g~~~~a~~~~~~m~~~ 500 (509)
+..+|...|+.+.|.++++++.+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445666666666666666666543
No 338
>PHA02875 ankyrin repeat protein; Provisional
Probab=68.09 E-value=1.3e+02 Score=29.84 Aligned_cols=148 Identities=9% Similarity=-0.021 Sum_probs=63.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHcCC--CH--HHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHH--HHHHHHHHhcC
Q 047221 272 LIEMFSVLGLYEMAKYVIKKTER--KV--SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY--NYVLGVLCKNG 345 (509)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~--~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g 345 (509)
.+...++.|+.+.+..+++.-.. +. ..-.+.+...+..|+. ++++.+.+.|..|+.... .+.+...+..|
T Consensus 71 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 71 ELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 44555566777776666654210 00 0011223333344443 344444555555443211 12333444566
Q ss_pred ChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHH
Q 047221 346 QDADACELLEEMLGRNCHPD---AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT---HAAFIKGYFIFYRYED 419 (509)
Q Consensus 346 ~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~ 419 (509)
+.+-+..++ +.|..++ ..-++.|. ..+..|+.+ +.+.+.+.|..++... ..+++...+..|+.+-
T Consensus 147 ~~~~v~~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i 217 (413)
T PHA02875 147 DIKGIELLI----DHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI 217 (413)
T ss_pred CHHHHHHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH
Confidence 655433333 3333322 12222333 233445543 3344455565555332 1234443445566554
Q ss_pred HHHHHHHHHhCCCCCCH
Q 047221 420 AYKYVVLSADKYKSSSN 436 (509)
Q Consensus 420 A~~~~~~m~~~~~~p~~ 436 (509)
+.-++ +.|..++.
T Consensus 218 v~~Ll----~~gad~n~ 230 (413)
T PHA02875 218 VRLFI----KRGADCNI 230 (413)
T ss_pred HHHHH----HCCcCcch
Confidence 44333 45555543
No 339
>PRK11906 transcriptional regulator; Provisional
Probab=68.03 E-value=1.4e+02 Score=30.02 Aligned_cols=161 Identities=11% Similarity=0.009 Sum_probs=83.9
Q ss_pred HHH--HHHHHHHHhcC-----CccHHHHHHHHHHH-cCCCCC-hHHHHHHHHHHHhc---------CChHHHHHHHHHHH
Q 047221 297 SYY--NILIKEMCRRC-----DFKGPRDLLVEMRQ-VGCEPI-TLTYNYVLGVLCKN---------GQDADACELLEEML 358 (509)
Q Consensus 297 ~~~--~~li~~~~~~g-----~~~~A~~~~~~m~~-~g~~p~-~~t~~~li~~~~~~---------g~~~~a~~~~~~m~ 358 (509)
..| ..++.+..... ..+.|+.+|.+... ..+.|+ ...|..+..++... ....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 55555554422 24567777777662 223444 34444444433321 22345555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH
Q 047221 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR-LATHAAFIKGYFIFYRYEDAYKYVVLSADKYK-SSSN 436 (509)
Q Consensus 359 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~ 436 (509)
+.+ +-|......+-.+..-.++.+.|..+|++.... .|| ..+|...-....-+|+.++|.+.+++..+... +.-.
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 553 335555555555556667777777777777654 444 23344444444556777777777777444321 1122
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHH
Q 047221 437 MLYSLLASLHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 437 ~~~~~li~~~~~~g~~~~a~~~~~~ 461 (509)
......+..|+.. ..++|+++|-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 2233333344443 35666666544
No 340
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.68 E-value=37 Score=30.19 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHc--CCCCChHHHHHHHH
Q 047221 270 RALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV--GCEPITLTYNYVLG 339 (509)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~ 339 (509)
+.-++.+.+.+.+.+|....+.- +.|...-..++..||-.|+|++|..-++-.-.. ...+...+|..+|.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 44455666677777777666542 345555666777777788888777666544432 12334555655554
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=67.56 E-value=62 Score=32.33 Aligned_cols=123 Identities=11% Similarity=0.111 Sum_probs=71.0
Q ss_pred HHHHHhcCChHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047221 338 LGVLCKNGQDADA-CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416 (509)
Q Consensus 338 i~~~~~~g~~~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 416 (509)
|.--...|++..| .++++.+...--.|+.+...+.| ....|+++.+.+.+....+. +.....+-.+++....+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 3344455666554 34555555544455555444444 44567788777777665433 33345566777777777788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 417 YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 417 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+++|..+-+.|....+....+ ...-...--..|-++++...|++...
T Consensus 373 ~~~a~s~a~~~l~~eie~~ei-~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 373 WREALSTAEMMLSNEIEDEEV-LTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHHhccccCChhh-eeeecccHHHHhHHHHHHHHHHHHhc
Confidence 888887777777665543322 11112222345667777777777654
No 342
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.54 E-value=9.6 Score=21.64 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=10.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+..++.+.|++++|.+.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444455555555544443
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=66.97 E-value=15 Score=23.23 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=11.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555555555543
No 344
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.42 E-value=30 Score=27.03 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 438 LYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 438 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
-|..|+..|...|..++|++++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377888888888888999988888876
No 345
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.53 E-value=1.2e+02 Score=28.41 Aligned_cols=41 Identities=15% Similarity=0.138 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 047221 313 KGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLE 355 (509)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~ 355 (509)
.+|+++|.-+.++. --.++-+.++.++....+..+|...+.
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHH
Confidence 46777777666542 123344556666666666666555443
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.30 E-value=1.1e+02 Score=28.10 Aligned_cols=168 Identities=12% Similarity=-0.023 Sum_probs=81.8
Q ss_pred cCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHc---CCC-----HHHHHHHHHHHHhcCCccHHHHHHHHHHH---cCC
Q 047221 260 VGGSCLVSGVRALIEMF-SVLGLYEMAKYVIKKT---ERK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQ---VGC 327 (509)
Q Consensus 260 ~g~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~m---~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~ 327 (509)
.+..||+..-|..-+.- .+..+.++|..-|+++ ++. -.+...+|..+.+.|++++.++.+.+|.. ..+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34556655433322211 1234677888888774 322 23345577777778888887777777752 111
Q ss_pred --CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---
Q 047221 328 --EPITLTYNYVLGVLCKNGQDADACELLEEMLGR-NCHPDA----ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL--- 397 (509)
Q Consensus 328 --~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--- 397 (509)
.-...+.|++++--....+.+.....++.-.+. .-..|. .|-+-|-..|...|.+.+..++++++...--
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 123445566665555555554444444322211 000011 1223344555555666666666666554311
Q ss_pred -CCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047221 398 -QPR-------LATHAAFIKGYFIFYRYEDAYKYVVLS 427 (509)
Q Consensus 398 -~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (509)
..| ...|..=|.+|-...+-.+-..++++.
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqa 217 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQA 217 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHH
Confidence 111 123444455555555544555555543
No 347
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.04 E-value=1e+02 Score=28.66 Aligned_cols=17 Identities=18% Similarity=-0.197 Sum_probs=8.2
Q ss_pred HHhcCCHHHHHHHHHHc
Q 047221 276 FSVLGLYEMAKYVIKKT 292 (509)
Q Consensus 276 ~~~~g~~~~A~~~~~~m 292 (509)
..+.+++++|+..+.++
T Consensus 13 ~v~~~~~~~ai~~yk~i 29 (421)
T COG5159 13 AVKSNDIEKAIGEYKRI 29 (421)
T ss_pred hhhhhhHHHHHHHHHHH
Confidence 34444555555555443
No 348
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=64.98 E-value=1.5e+02 Score=29.73 Aligned_cols=124 Identities=10% Similarity=0.099 Sum_probs=82.7
Q ss_pred HHHHHhcCCccHHH-HHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047221 303 IKEMCRRCDFKGPR-DLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK 381 (509)
Q Consensus 303 i~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 381 (509)
|.--...|++..|- +++..++...-.|+.+-..+.| ....|+++.+...+....+. +.....+..+++...-+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 33334456665554 4566666655567766665554 56788999998888776554 44456678888888889999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 382 FDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
+++|..+-.-|....++. ..........--..|-++++...|+++...
T Consensus 373 ~~~a~s~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 373 WREALSTAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 999999888888776553 333332222334557788888888877643
No 349
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=63.83 E-value=1e+02 Score=26.92 Aligned_cols=56 Identities=13% Similarity=-0.010 Sum_probs=39.3
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC--------------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047221 441 LLASLHDKNNNPVMAKNVLSEMMKNG--------------LRPNVSVYRRVLKHLHTSHQEHMAKCLSSR 496 (509)
Q Consensus 441 ~li~~~~~~g~~~~a~~~~~~m~~~g--------------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 496 (509)
+++..|.+..+|.++.++++.|.+.. ..+.-...+.....+.+.|..|.|+.++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 35556667777777777777775531 335556677777888888888888888873
No 350
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.68 E-value=2.1e+02 Score=30.79 Aligned_cols=165 Identities=15% Similarity=0.074 Sum_probs=76.7
Q ss_pred HHHHHhcCCHHHHHHHHHHcC---C---CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 047221 273 IEMFSVLGLYEMAKYVIKKTE---R---KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ 346 (509)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~---~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 346 (509)
|+-+.+.+.+++|..+-+... + -...+...|..+.-.|++++|-...-.|... +..-|.--+..+...++
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 444556666666666665542 1 1234556666666666666666666666532 33444444444444444
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047221 347 DADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVL 426 (509)
Q Consensus 347 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (509)
... ++.-+....-..+...|..++..+.. ..... |.+.++. .+++...-...+++- .-+++
T Consensus 439 l~~---Ia~~lPt~~~rL~p~vYemvLve~L~----~~~~~-F~e~i~~-Wp~~Lys~l~iisa~--~~q~~-------- 499 (846)
T KOG2066|consen 439 LTD---IAPYLPTGPPRLKPLVYEMVLVEFLA----SDVKG-FLELIKE-WPGHLYSVLTIISAT--EPQIK-------- 499 (846)
T ss_pred cch---hhccCCCCCcccCchHHHHHHHHHHH----HHHHH-HHHHHHh-CChhhhhhhHHHhhc--chHHH--------
Confidence 332 11212221112344556666666654 11122 2222221 122222222222221 11111
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 427 SADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 427 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+. -+ +...-..|+..|...+++.+|++++-...+
T Consensus 500 --q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 500 --QN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred --hh-cc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 00 01 111223388888899999999998877653
No 351
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=63.54 E-value=24 Score=25.66 Aligned_cols=17 Identities=12% Similarity=-0.064 Sum_probs=6.7
Q ss_pred HHHHHHHHHhCCChHHH
Q 047221 439 YSLLASLHDKNNNPVMA 455 (509)
Q Consensus 439 ~~~li~~~~~~g~~~~a 455 (509)
+..++.+|+..|++.++
T Consensus 46 lG~l~qA~~e~Gkyr~~ 62 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREM 62 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444443333
No 352
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=63.29 E-value=22 Score=20.33 Aligned_cols=31 Identities=13% Similarity=-0.057 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 472 SVYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 472 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
.+|..+-..|...|++++|.+.|++..+...
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3577788889999999999999998876543
No 353
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.88 E-value=32 Score=22.22 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=22.2
Q ss_pred HhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 047221 447 DKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLK 479 (509)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 479 (509)
.+.|...++..++++|.+.|+.-+...|..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777777766666654
No 354
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=62.81 E-value=1.2e+02 Score=27.47 Aligned_cols=79 Identities=14% Similarity=0.185 Sum_probs=36.4
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C-----------CCCCHHHHHHHHHHHHHcCChHHH
Q 047221 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR-N-----------CHPDAITYEIFIVYSCRVGKFDVA 385 (509)
Q Consensus 318 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g-----------~~p~~~~~~~li~~~~~~g~~~~a 385 (509)
+.+-...+++.-+.....+++ +...|++.+|+..++.-... | -.|.......++..|. .+++++|
T Consensus 181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A 257 (333)
T KOG0991|consen 181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEA 257 (333)
T ss_pred HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHH
Confidence 333334445544444444443 34556666666555543221 1 1233344444444432 2445555
Q ss_pred HHHHHHHHHCCCCC
Q 047221 386 FNFFNQMVKRGLQP 399 (509)
Q Consensus 386 ~~~~~~m~~~g~~p 399 (509)
.++++++-+.|+.|
T Consensus 258 ~~il~~lw~lgysp 271 (333)
T KOG0991|consen 258 LKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHHHcCCCH
Confidence 55555555555544
No 355
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=62.60 E-value=8 Score=31.23 Aligned_cols=28 Identities=29% Similarity=0.604 Sum_probs=15.0
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047221 345 GQDADACELLEEMLGRNCHPDAITYEIFIV 374 (509)
Q Consensus 345 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 374 (509)
|.-.+|..+|..|++.|-+||. |+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 4444555666666666655553 444444
No 356
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.28 E-value=2.7e+02 Score=30.74 Aligned_cols=187 Identities=13% Similarity=0.108 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHcCC---CCChHHHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCCCHHHHH--
Q 047221 298 YYNILIKEMCRRCDFKGPRDLLVEMRQVGC---EPITLTYNYVLGVLCKNGQD--ADACELLEEMLGRNCHPDAITYE-- 370 (509)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~-- 370 (509)
-|..|+..|...|+.++|++++.+.....- .--..-+--++.-..+.+.. +-+++.-+...+..-.-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 478899999999999999999998886320 01111222355544444443 44444433333321000000011
Q ss_pred ----------HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--------HHHHHHH-----HHHH
Q 047221 371 ----------IFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR--------YEDAYKY-----VVLS 427 (509)
Q Consensus 371 ----------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------~~~A~~~-----~~~m 427 (509)
--+-.|.+....+-+...++.+....-.++..-.+.++.-|+..=+ .+++.+. +..+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 1233456777788889999998877767777888888888875322 2233333 1112
Q ss_pred Hh--CCCCCC--------HHHHHHHHHHHHhCCChHHHHHHHHHHHHC-------------CCCcCHHHHHHHHHHHHhc
Q 047221 428 AD--KYKSSS--------NMLYSLLASLHDKNNNPVMAKNVLSEMMKN-------------GLRPNVSVYRRVLKHLHTS 484 (509)
Q Consensus 428 ~~--~~~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------g~~p~~~t~~~ll~~~~~~ 484 (509)
.+ ....|. ...|.-..-.+.+.|+.++|+.++-..... ...++...|..+++.|...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHhcc
Confidence 21 122222 223333333444889999998887665431 2345778888888888765
No 357
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.84 E-value=32 Score=24.98 Aligned_cols=47 Identities=6% Similarity=-0.017 Sum_probs=35.9
Q ss_pred hCCChHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 047221 448 KNNNPVMAKNVLSEMMKNGLRPN--VSVYRRVLKHLHTSHQEHMAKCLS 494 (509)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~ 494 (509)
...+-++|+..|+...+.-..|. ..++..++.+++..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999988877533332 247889999999999999988753
No 358
>PRK09687 putative lyase; Provisional
Probab=59.66 E-value=1.5e+02 Score=27.71 Aligned_cols=136 Identities=13% Similarity=0.012 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047221 330 ITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG-KFDVAFNFFNQMVKRGLQPRLATHAAFI 408 (509)
Q Consensus 330 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li 408 (509)
+..+-...+.++++.|+ +++...+-.+.+. +|..+-...+.++.+.+ +...+...+..+... +|..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHH
Confidence 44444455555555554 2344444444442 23334444444444432 133444444444432 2455555556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 047221 409 KGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481 (509)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 481 (509)
.++.+.|+.. |...+-...+.+. . .-..+.++...|.. +|+..+..+.+. .||..+-...+.+|
T Consensus 214 ~aLg~~~~~~-av~~Li~~L~~~~---~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 214 IGLALRKDKR-VLSVLIKELKKGT---V--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHHccCChh-HHHHHHHHHcCCc---h--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 6666666533 3333333333221 1 22355555555553 455555555542 23444444444443
No 359
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.08 E-value=1.9e+02 Score=28.51 Aligned_cols=173 Identities=10% Similarity=0.015 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHcC-------CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHc---------CCCCC
Q 047221 267 SGVRALIEMFSVLGLYEMAKYVIKKTE-------RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV---------GCEPI 330 (509)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~ 330 (509)
..+.-+.+-|..+|+++.|.+.+.+.. .-+..|-.+|..-.-.|+|..+.....+.... -+.+-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 456788899999999999999998852 22455667777777788888777777666543 13334
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-HCCCCCCHHH
Q 047221 331 TLTYNYVLGVLCKNGQDADACELLEEMLGRN------CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV-KRGLQPRLAT 403 (509)
Q Consensus 331 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~ 403 (509)
...+..+...+.+ ++..|.+.|-...... +.|..++....+.+.+--++-+--..+...-. +.=.......
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 4455555544444 6666666554332221 23433333344455554444333222222111 0001123444
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCCHHHHHHHH
Q 047221 404 HAAFIKGYFIFYRYEDAYKYVVLSADK-----YKSSSNMLYSLLA 443 (509)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li 443 (509)
+..|-.-| .+++..+++++++++.. -+.|.+.+.-.+|
T Consensus 309 r~il~~fy--~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 44444444 36788888888887643 3345555444444
No 360
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=56.74 E-value=54 Score=28.64 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 433 SSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 433 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
.|+...|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45556666666666666666666666666554
No 361
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=56.51 E-value=62 Score=30.84 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=33.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 340 VLCKNGQDADACELLEEMLGRNCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 340 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
-|.+.|.+++|...|..-... .| |.+++..-..+|.+..++..|+.--...+
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 477777777777777665543 34 66666666677777777776655444443
No 362
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=56.47 E-value=46 Score=21.46 Aligned_cols=23 Identities=9% Similarity=0.029 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHH
Q 047221 347 DADACELLEEMLGRNCHPDAITY 369 (509)
Q Consensus 347 ~~~a~~~~~~m~~~g~~p~~~~~ 369 (509)
.+++..++++|.+.|+..+...|
T Consensus 18 I~~~~~~l~~l~~~g~~is~~l~ 40 (48)
T PF11848_consen 18 ISEVKPLLDRLQQAGFRISPKLI 40 (48)
T ss_pred hhhHHHHHHHHHHcCcccCHHHH
Confidence 33333333333333333333333
No 363
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=55.84 E-value=1.3e+02 Score=28.75 Aligned_cols=21 Identities=14% Similarity=0.074 Sum_probs=9.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHc
Q 047221 272 LIEMFSVLGLYEMAKYVIKKT 292 (509)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m 292 (509)
++...-+.++-++|.+.++++
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i 101 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKI 101 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHH
Confidence 333333444555555555443
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.79 E-value=89 Score=25.13 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=22.6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 351 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
.+.++.+..-.+.|+.....+-+.+|.+.+|+..|.++|+-++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444444555555555555555555555555555555444
No 365
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.66 E-value=50 Score=26.51 Aligned_cols=59 Identities=14% Similarity=0.020 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 047221 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478 (509)
Q Consensus 419 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 478 (509)
+..+-++....-++.|+......-+.+|-+.+++..|.++|+-.+.. ..+....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 45555666667788888888888888888888888888888877653 333333455544
No 366
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=54.49 E-value=3.5e+02 Score=30.42 Aligned_cols=206 Identities=14% Similarity=0.124 Sum_probs=101.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHcCCCCChHHHHHHH---
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKT--------ERKVSYYNILIKEMCRR-CDFKGPRDLLVEMRQVGCEPITLTYNYVL--- 338 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m--------~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~~t~~~li--- 338 (509)
+.+.-+...+++.+|..+.++- .-|...|-.=+..+.+. ++.+---.++..+.++.+.- ..|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~--tmY~~~~~~~ 776 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTK--TMYKDTYPPS 776 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccc--cccccccccc
Confidence 4555666778888888888763 23444444444445443 33333333334444332211 1111111
Q ss_pred ---------HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047221 339 ---------GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG--KFDVAFNFFNQMVKRGLQPRLATHAAF 407 (509)
Q Consensus 339 ---------~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~l 407 (509)
......++++...+.+.+..+. ..-...-...+|.+|++.+ ++++|+.+..++.+. +....-..
T Consensus 777 ~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----~~~~ae~a 851 (928)
T PF04762_consen 777 SEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE----DPESAEEA 851 (928)
T ss_pred cccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc----ChHHHHHH
Confidence 1112233444433333333321 1223445677889999988 899999999998876 22222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 047221 408 IKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQE 487 (509)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 487 (509)
+...+-.- ++-++|+.....- |... +++-|-..+.+++|=+-.++++.+ ++|+..-|.+ + .+.|++
T Consensus 852 lkyl~fLv---Dvn~Ly~~ALG~Y---Dl~L--al~VAq~SQkDPKEYLPfL~~L~~--l~~~~rry~I--D--~hLkRy 917 (928)
T PF04762_consen 852 LKYLCFLV---DVNKLYDVALGTY---DLEL--ALMVAQQSQKDPKEYLPFLQELQK--LPPLYRRYKI--D--DHLKRY 917 (928)
T ss_pred HhHheeec---cHHHHHHHHhhhc---CHHH--HHHHHHHhccChHHHHHHHHHHHh--CChhheeeeH--h--hhhCCH
Confidence 22222211 2222332222110 2211 233344456677887777777765 3444332221 1 345888
Q ss_pred HHHHHHHHHH
Q 047221 488 HMAKCLSSRY 497 (509)
Q Consensus 488 ~~a~~~~~~m 497 (509)
++|++-+.++
T Consensus 918 ~kAL~~L~~~ 927 (928)
T PF04762_consen 918 EKALRHLSAC 927 (928)
T ss_pred HHHHHHHHhh
Confidence 8888766543
No 367
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=54.03 E-value=45 Score=31.74 Aligned_cols=90 Identities=13% Similarity=0.116 Sum_probs=60.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 047221 374 VYSCRVGKFDVAFNFFNQMVKRGLQP-RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNP 452 (509)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 452 (509)
.-|.+.|.+++|++.|..-... .| |.+++..-..+|.+...+..|+.=....... | ...+.+|.+.+..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHHHHHHHH
Confidence 4588999999999999876644 45 8888988899999999988777665554432 2 2356667666555
Q ss_pred HHHHHHHHHHHHC-----CCCcCHHH
Q 047221 453 VMAKNVLSEMMKN-----GLRPNVSV 473 (509)
Q Consensus 453 ~~a~~~~~~m~~~-----g~~p~~~t 473 (509)
.+++....+..+. .+.|+..-
T Consensus 175 R~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 175 RESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 5555555444331 25676443
No 368
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.75 E-value=2.4e+02 Score=28.03 Aligned_cols=210 Identities=11% Similarity=0.101 Sum_probs=100.6
Q ss_pred HhcCCchHHHHHHhCCCCCCHHH--HHHHHHHHhcCCc-hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHH
Q 047221 140 LRSGDSETESKLLSMSVSLSNAS--VIEILRVLNSEKV-SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQ 216 (509)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~~~~~--~~~ll~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~ 216 (509)
...+..++.+.|.+.|..++... ..+.|...+..+. +..+++-.. |..|+.. +.... ..+...++.|+.+.+..
T Consensus 10 ~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~-~~~~~-t~L~~A~~~g~~~~v~~ 86 (413)
T PHA02875 10 ILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKH-GAIPDVK-YPDIE-SELHDAVEEGDVKAVEE 86 (413)
T ss_pred HHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC-CCCcccc-CCCcc-cHHHHHHHCCCHHHHHH
Confidence 33444555555555565554322 2334444445554 444444332 4344322 11122 34555667888887776
Q ss_pred HHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHc-C
Q 047221 217 LLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSG--VRALIEMFSVLGLYEMAKYVIKKT-E 293 (509)
Q Consensus 217 l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m-~ 293 (509)
+++.-....-..+....+.+.. +...+.. ++++.+.+.|..++... ..+.+...+..|+.+.+..+++.- .
T Consensus 87 Ll~~~~~~~~~~~~~g~tpL~~--A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~ 160 (413)
T PHA02875 87 LLDLGKFADDVFYKDGMTPLHL--ATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC 160 (413)
T ss_pred HHHcCCcccccccCCCCCHHHH--HHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence 6653211100011111122222 2223334 45555566676654422 234556666788888877776653 1
Q ss_pred ---CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 047221 294 ---RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY---NYVLGVLCKNGQDADACELLEEMLGRNCHPDAI 367 (509)
Q Consensus 294 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 367 (509)
.|..-++.|. ..+..|+. ++.+.+.+.|..++...- .+++...+..|+.+ +.+.+.+.|..++..
T Consensus 161 ~~~~d~~g~TpL~-~A~~~g~~----eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 161 LDIEDCCGCTPLI-IAMAKGDI----AICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNIM 231 (413)
T ss_pred CCCCCCCCCCHHH-HHHHcCCH----HHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcchH
Confidence 2222223333 33445554 345556667766654322 24455455667654 445556677766643
No 369
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=53.38 E-value=14 Score=29.84 Aligned_cols=30 Identities=23% Similarity=0.373 Sum_probs=17.9
Q ss_pred CCChHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 047221 449 NNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKH 480 (509)
Q Consensus 449 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 480 (509)
.|.-.+|..+|++|++.|-.||. |+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34555666666666666666663 5555544
No 370
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=52.93 E-value=94 Score=23.15 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=22.1
Q ss_pred hcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHH
Q 047221 278 VLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGP 315 (509)
Q Consensus 278 ~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A 315 (509)
..|+.+.|.+++..+++....|...++++.+.|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIVQKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhccCCcHHHHHHHHHHHcCchhhh
Confidence 44566666666666655555566666666665554433
No 371
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=52.66 E-value=2.5e+02 Score=28.05 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHH
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMR 323 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~ 323 (509)
...+|.-|...|+..+..+.++++-
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DLn 372 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDLN 372 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHcC
Confidence 4567888888888888777777554
No 372
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=52.56 E-value=71 Score=27.88 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=16.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 363 HPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 363 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
.|+..+|..++.++...|+.++|.++.+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555544
No 373
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=51.99 E-value=29 Score=32.47 Aligned_cols=43 Identities=12% Similarity=-0.015 Sum_probs=31.8
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 047221 397 LQPRLAT-HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLY 439 (509)
Q Consensus 397 ~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 439 (509)
+.||..+ |+..|..-.+.||+++|+.++++.++.|..--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3445444 678888888889999999999888888876555444
No 374
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=51.71 E-value=1.8e+02 Score=26.11 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 047221 363 HPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP---RLATH--AAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437 (509)
Q Consensus 363 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 437 (509)
.++..-+|.||--|.-...+.+|-..|.. +.|+.| |..++ ..-|......|++++|.+....+...-+..|..
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~ 100 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE 100 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh
Confidence 44445555555555544445555554432 334444 22222 334555566777777777766654433333332
Q ss_pred HHHHHHH----HHHhCCChHHHHHHHHH
Q 047221 438 LYSLLAS----LHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 438 ~~~~li~----~~~~~g~~~~a~~~~~~ 461 (509)
.+-.|.. -..+.|..++|+++.+.
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2211111 12345555555555543
No 375
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=50.30 E-value=2.2e+02 Score=26.64 Aligned_cols=127 Identities=9% Similarity=0.045 Sum_probs=61.3
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHcCCCCChHHH-------HHHHHHHHhcCChHHHHHHHHH----HHhCCCCCCHHHHH
Q 047221 302 LIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY-------NYVLGVLCKNGQDADACELLEE----MLGRNCHPDAITYE 370 (509)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------~~li~~~~~~g~~~~a~~~~~~----m~~~g~~p~~~~~~ 370 (509)
+.+-..+.+++++|+..+.+....|+..|..+. ..+...|...|+...--+.... |.+..-+.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 344556677778888888887777777776554 3344556666665544433322 22222122233344
Q ss_pred HHHHHHHHc-CChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047221 371 IFIVYSCRV-GKFDVAFNFFNQMVKRGLQPR-----LATHAAFIKGYFIFYRYEDAYKYVVLSA 428 (509)
Q Consensus 371 ~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (509)
+||..+-.. +.++....+....++....-. ...-..+|..+.+.|.+.+|+.+...+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 444443322 233444444433332210001 1112345555556666666666655554
No 376
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.08 E-value=1e+02 Score=25.49 Aligned_cols=49 Identities=10% Similarity=-0.066 Sum_probs=24.1
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047221 389 FNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNML 438 (509)
Q Consensus 389 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 438 (509)
.+.+.+.|++++.. -..+++.+...++.-.|.++++++.+.+......|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33444455554432 23345555555555556666666655544444443
No 377
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=49.35 E-value=1.1e+02 Score=32.17 Aligned_cols=62 Identities=13% Similarity=0.010 Sum_probs=27.6
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047221 365 DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSA 428 (509)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (509)
+...-.-++..|.+.|-.+.|..+.+.+-.+-. ...-|..-+..+.++|+...+..+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566677777787877777777776654311 12345556666667777666555554444
No 378
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.27 E-value=38 Score=23.28 Aligned_cols=16 Identities=19% Similarity=0.343 Sum_probs=5.5
Q ss_pred HHHHHcCChHHHHHHH
Q 047221 374 VYSCRVGKFDVAFNFF 389 (509)
Q Consensus 374 ~~~~~~g~~~~a~~~~ 389 (509)
.+|...|++++|.+.+
T Consensus 31 ~gllqlg~~~~a~eYi 46 (62)
T PF14689_consen 31 YGLLQLGKYEEAKEYI 46 (62)
T ss_dssp HHHHHTT-HHHHHHHH
T ss_pred HHHHHCCCHHHHHHHH
Confidence 3333333333333333
No 379
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.82 E-value=1.3e+02 Score=23.50 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 047221 334 YNYVLGVLCKNGQDADACELLEEMLG 359 (509)
Q Consensus 334 ~~~li~~~~~~g~~~~a~~~~~~m~~ 359 (509)
|..|+..|...|..++|++++.++.+
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55555556666666666666655554
No 380
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=48.46 E-value=1.9e+02 Score=25.33 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-------CCCHHHHHHHHH-HHHhcCC--ccHHH
Q 047221 247 KKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT-------ERKVSYYNILIK-EMCRRCD--FKGPR 316 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~~~~~li~-~~~~~g~--~~~A~ 316 (509)
-+++.++-.++.. ++...-.....|++++|..-++++ ..-...|..+.. +|+..+. +-+|.
T Consensus 19 REE~l~lsRei~r---------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 19 REEALKLSREIVR---------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Confidence 4555555555544 333344444566777777666654 223344555444 5555444 33444
Q ss_pred HHHHHHH
Q 047221 317 DLLVEMR 323 (509)
Q Consensus 317 ~~~~~m~ 323 (509)
-++.-..
T Consensus 90 ~l~~~l~ 96 (204)
T COG2178 90 LLYSILK 96 (204)
T ss_pred HHHHHHh
Confidence 4444444
No 381
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=48.30 E-value=1.4e+02 Score=25.93 Aligned_cols=48 Identities=8% Similarity=0.008 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHCCCCCCH--HH-----HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047221 382 FDVAFNFFNQMVKRGLQPRL--AT-----HAAFIKGYFIFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~~--~~-----~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (509)
.+.|+.+|+.+.+.--.|.. .. --..+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45667777666555322211 11 12233356666666666666666554
No 382
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=48.28 E-value=1.1e+02 Score=26.98 Aligned_cols=84 Identities=11% Similarity=0.036 Sum_probs=40.7
Q ss_pred HHhcCCHHHHHHHHHHc---CC------CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 047221 276 FSVLGLYEMAKYVIKKT---ER------KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ 346 (509)
Q Consensus 276 ~~~~g~~~~A~~~~~~m---~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 346 (509)
+.+.|++++|..-|... .| ..+.|..-..++.+.+.++.|++--....+.+ +........-..+|.+..+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK 183 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence 34456666665555442 11 12344444555666666666665555555443 1111111222234555556
Q ss_pred hHHHHHHHHHHHhC
Q 047221 347 DADACELLEEMLGR 360 (509)
Q Consensus 347 ~~~a~~~~~~m~~~ 360 (509)
+++|+.=|+.+.+.
T Consensus 184 ~eealeDyKki~E~ 197 (271)
T KOG4234|consen 184 YEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHHh
Confidence 66666666655554
No 383
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=47.34 E-value=75 Score=21.08 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=22.0
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 478 (509)
+.-++.+.|++++|.+..+.+.+ +.|+..-...|-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 55567777777777777777776 566665544443
No 384
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=47.15 E-value=44 Score=17.68 Aligned_cols=25 Identities=12% Similarity=-0.110 Sum_probs=12.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 047221 439 YSLLASLHDKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 439 ~~~li~~~~~~g~~~~a~~~~~~m~ 463 (509)
|..+...+...|++++|...++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444445555555555555554443
No 385
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=46.76 E-value=2.7e+02 Score=26.64 Aligned_cols=92 Identities=11% Similarity=0.002 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCHHHHHHHHHH-HHhCCChHHHHHHHHHHHHCCCCcCH----HH
Q 047221 403 THAAFIKGYFIFYRYEDAYKYVVLSAD----KYKSSSNMLYSLLASL-HDKNNNPVMAKNVLSEMMKNGLRPNV----SV 473 (509)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~----~t 473 (509)
.+-....-||+.|+.+.|++.+.+..+ .|.+.|+..+.+=+.. |..+.-..+-++..+.+.+.|---+. .+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 445556667777777777766654433 3556666544332222 22333344555555555555432222 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 047221 474 YRRVLKHLHTSHQEHMAKCLSSR 496 (509)
Q Consensus 474 ~~~ll~~~~~~g~~~~a~~~~~~ 496 (509)
|..+. |....++.+|-.+|-+
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld 206 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLD 206 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHH
Confidence 43332 3444566666666544
No 386
>PF13934 ELYS: Nuclear pore complex assembly
Probab=46.35 E-value=2.2e+02 Score=25.62 Aligned_cols=91 Identities=4% Similarity=-0.120 Sum_probs=49.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHH---HHHHHHHHhcCCccHHHHHH
Q 047221 243 KALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYY---NILIKEMCRRCDFKGPRDLL 319 (509)
Q Consensus 243 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~li~~~~~~g~~~~A~~~~ 319 (509)
..+++++|.+.+-. ..+.|+- -.-++.++...|+.+.|.++++.++|...+. ..++.. ..++.+.||...-
T Consensus 90 D~~~~~~A~~~L~~---ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSH---PSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCC---CCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 33446666665522 1222221 2246677777788888888888886654333 333333 5567777777766
Q ss_pred HHHHHcCCCCChHHHHHHHHHHH
Q 047221 320 VEMRQVGCEPITLTYNYVLGVLC 342 (509)
Q Consensus 320 ~~m~~~g~~p~~~t~~~li~~~~ 342 (509)
+...+.. ....+..++..+.
T Consensus 164 R~~~~~~---~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 164 RSYPDEL---RRRLFEQLLEHCL 183 (226)
T ss_pred HhCchhh---hHHHHHHHHHHHH
Confidence 6555321 1234455555444
No 387
>PF13934 ELYS: Nuclear pore complex assembly
Probab=46.35 E-value=2.2e+02 Score=25.62 Aligned_cols=107 Identities=13% Similarity=0.102 Sum_probs=59.4
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047221 333 TYNYVLGVLCK--NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410 (509)
Q Consensus 333 t~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (509)
.|...+.++.. .+++++|.+.+.+ -.+.|+-. .-++.++...|+.+.|..+++.+.-.. .+......++..
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~---ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~~ 150 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSH---PSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCC---CCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHHH
Confidence 35566666654 4566667666632 22233322 236777777888888888887753221 122333333334
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 047221 411 YFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNN 450 (509)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 450 (509)
..+|.+.+|+.+-+...+.. ....+..++..+....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 56688888888776554421 1335556666655443
No 388
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.15 E-value=2.1e+02 Score=25.17 Aligned_cols=54 Identities=7% Similarity=0.030 Sum_probs=24.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 410 GYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
.....|.+++|+..++...+.+..+ .....-...+...|+-++|..-|++..+.
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 3444555555555554444333211 11122234444555555555555555443
No 389
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=46.04 E-value=4.4e+02 Score=28.93 Aligned_cols=198 Identities=10% Similarity=0.004 Sum_probs=110.2
Q ss_pred HhcCCccHHHHHHHHHHHcCCCCCh-------HHHHHHHHH-HHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 047221 307 CRRCDFKGPRDLLVEMRQVGCEPIT-------LTYNYVLGV-LCKNGQDADACELLEEMLGR----NCHPDAITYEIFIV 374 (509)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~-~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~ 374 (509)
...+++++|..++.+....--.|+. ..|+.+-.. ....|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3467899999999887754223222 133333222 23568889998888776654 22345566777777
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHH--HHHHcCCH--HHHHHHHHHHHhC-----CC-CCCHHHHHH
Q 047221 375 YSCRVGKFDVAFNFFNQMVKRGLQPRLATH---AAFIK--GYFIFYRY--EDAYKYVVLSADK-----YK-SSSNMLYSL 441 (509)
Q Consensus 375 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~---~~li~--~~~~~g~~--~~A~~~~~~m~~~-----~~-~p~~~~~~~ 441 (509)
+..-.|++++|..+.++..+.....+...+ ..+.. .+...|.. ++.+..|...... .. .+-.-++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888889999999988876655333344333 33322 24456632 3333334433322 11 122334555
Q ss_pred HHHHHHhC-CChHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047221 442 LASLHDKN-NNPVMAKNVLSEMMKNGLRPNVSV--YRRVLKHLHTSHQEHMAKCLSSRYSSLSLGS 504 (509)
Q Consensus 442 li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 504 (509)
+..++.+. +...++..-++--......|-..- +..|.+.....|+.++|...+.++......+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 55555552 112222222222222222222222 2366777788999999999999998765554
No 390
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.26 E-value=1.3e+02 Score=27.56 Aligned_cols=58 Identities=14% Similarity=-0.047 Sum_probs=39.4
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH----CC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 441 LLASLHDKNNNPVMAKNVLSEMMK----NG-LRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 441 ~li~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
-|..-|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.+....+.=+|.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 466677778888888888877743 23 23455566777777778888888777655543
No 391
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.91 E-value=36 Score=31.84 Aligned_cols=41 Identities=24% Similarity=0.426 Sum_probs=28.0
Q ss_pred CCHH-HHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHH
Q 047221 294 RKVS-YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY 334 (509)
Q Consensus 294 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 334 (509)
+|.. -||..|....+.||+++|+.+++|.++.|+.--..||
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4433 3567778888888888888888888887765444444
No 392
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=44.83 E-value=3.6e+02 Score=27.51 Aligned_cols=236 Identities=9% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhC-----CCccCHHHHHHHHHHHHhccCCHHHHHHH
Q 047221 179 CFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVY-----QVCLNEKAFGFLPVLISSKALTKKGIWRV 253 (509)
Q Consensus 179 ~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 253 (509)
++|+......|+.. .|+..|..|-..-....-..+...|.-. +.......+............ ..++...
T Consensus 303 ~v~ee~v~~l~t~s----m~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t-~~~~r~~ 377 (568)
T KOG2396|consen 303 AVYEEAVKTLPTES----MWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNT-LNEAREV 377 (568)
T ss_pred HHHHHHHHHhhHHH----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhc-cchHhHH
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---------CCCHHHHHHHH-HHHHhcCCccHHHHHHHHHH
Q 047221 254 VEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT---------ERKVSYYNILI-KEMCRRCDFKGPRDLLVEMR 323 (509)
Q Consensus 254 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~ 323 (509)
-..+...++..+...|-.-+....+... ++.-+|.+. .+-...|+... ..+.+....+.....+..|.
T Consensus 378 a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~ 455 (568)
T KOG2396|consen 378 AVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI 455 (568)
T ss_pred HHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc
Q ss_pred HcCCCCChHHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHHcCChHHHHHHHHHHHHC-CCC
Q 047221 324 QVGCEPITLTY-NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFI---VYSCRVGKFDVAFNFFNQMVKR-GLQ 398 (509)
Q Consensus 324 ~~g~~p~~~t~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~-g~~ 398 (509)
.|+..|+ +.++.-+.+.|-..+|.+++..+... .+|+...|.-+| .....+| +.-+..+|+.|... |
T Consensus 456 ----~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg-- 527 (568)
T KOG2396|consen 456 ----GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG-- 527 (568)
T ss_pred ----CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047221 399 PRLATHAAFIKGYFIFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 399 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (509)
-|...|.--+.-=...|..+.+-.++.+..+
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHH
No 393
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=44.81 E-value=4.1e+02 Score=28.20 Aligned_cols=187 Identities=13% Similarity=0.135 Sum_probs=92.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhh-hCCCcc--CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH-----
Q 047221 196 DICSLVIDNCGRLDDYETMRQLLNDFN-VYQVCL--NEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVS----- 267 (509)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~l~~~m~-~~~~~p--~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~----- 267 (509)
..|..||.. |++.++-+. ...+.| +..++--+...++....++++|+..+++.....-.++..
T Consensus 31 ~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~ 101 (608)
T PF10345_consen 31 KQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFR 101 (608)
T ss_pred HHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 356555543 444444444 223333 233444444445555556777777777654332222222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc----CC---C--HHHHHHH-HHHHHhcCCccHHHHHHHHHHHcC---CCCChHHH
Q 047221 268 GVRALIEMFSVLGLYEMAKYVIKKT----ER---K--VSYYNIL-IKEMCRRCDFKGPRDLLVEMRQVG---CEPITLTY 334 (509)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m----~~---~--~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~ 334 (509)
+-..++..|.+.+... |....++. +. . ...|.-+ +..+...++...|.+.++.+...- ..|-..++
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 1235556666666555 66666553 11 1 1222222 222323367777777777665431 23444455
Q ss_pred HHHHHHHH--hcCChHHHHHHHHHHHhCC---------CCCCHHHHHHHHHHHH--HcCChHHHHHHHHHH
Q 047221 335 NYVLGVLC--KNGQDADACELLEEMLGRN---------CHPDAITYEIFIVYSC--RVGKFDVAFNFFNQM 392 (509)
Q Consensus 335 ~~li~~~~--~~g~~~~a~~~~~~m~~~g---------~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m 392 (509)
..++.+.. +.+..+++.+..+++.... ..|-..+|..+++.++ ..|+++.+...++++
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555544 3344556666666553321 1334556666665544 456655665555544
No 394
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.67 E-value=3.5e+02 Score=27.44 Aligned_cols=119 Identities=12% Similarity=0.003 Sum_probs=75.6
Q ss_pred hccCCHHHHHHHHHHhhhCCC-ccC-------HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 047221 206 GRLDDYETMRQLLNDFNVYQV-CLN-------EKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGV--RALIEM 275 (509)
Q Consensus 206 ~~~g~~~~A~~l~~~m~~~~~-~p~-------~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~--~~li~~ 275 (509)
.-.|++.+|++-...|++-.- .|. ......++..++..-+.++.|+.-|....+.-...|...+ ..+...
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 346888888888888865321 222 3345567777777777788888877776654444444333 466777
Q ss_pred HHhcCCHHHHHHHHHHcCCC-HHHHHH--------HHHH--HHhcCCccHHHHHHHHHHH
Q 047221 276 FSVLGLYEMAKYVIKKTERK-VSYYNI--------LIKE--MCRRCDFKGPRDLLVEMRQ 324 (509)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~-~~~~~~--------li~~--~~~~g~~~~A~~~~~~m~~ 324 (509)
|.+.|+.+.-.++++.+.|+ ..++.. ++.| ....+++.||...+.+-.+
T Consensus 414 YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 88889888888888888433 222211 1111 1245777788777776554
No 395
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=44.56 E-value=1.3e+02 Score=31.52 Aligned_cols=92 Identities=18% Similarity=0.244 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHc--CCCCChHHHHHHHHHHHhcCChHH------HHHHHHHHHhCCCCCCHHHHHHH
Q 047221 301 ILIKEMCRRCDFKGPRDLLVEMRQV--GCEPITLTYNYVLGVLCKNGQDAD------ACELLEEMLGRNCHPDAITYEIF 372 (509)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~------a~~~~~~m~~~g~~p~~~~~~~l 372 (509)
+|..+|..+|++..+.++++.+... |-+.-...||..|+-..+.|.++- |.++++ +..+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq---~a~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQ---QARLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHH---HhhcCCcchHHHHH
Confidence 7888999999999999999888754 333345667888888888887642 333333 22355578888888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC
Q 047221 373 IVYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
+.+-...-.-.-..-++.+++..
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~~ 132 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIHR 132 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHHh
Confidence 87766544444555566665543
No 396
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=44.29 E-value=1.3e+02 Score=22.39 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=15.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 047221 343 KNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFD 383 (509)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 383 (509)
..|+.+.|.+++..+. +| ...|..++.++...|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3344555555555444 31 223444444444444433
No 397
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=44.12 E-value=3.1e+02 Score=28.54 Aligned_cols=149 Identities=10% Similarity=0.019 Sum_probs=82.7
Q ss_pred CCccCHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHc---C--CCHH
Q 047221 225 QVCLNEKAFGFLPVLISSKALT-KKGIWRVVEVLNQVGGSCLVSGVRALIEMFS-VLGLYEMAKYVIKKT---E--RKVS 297 (509)
Q Consensus 225 ~~~p~~~~~~~ll~~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m---~--~~~~ 297 (509)
.-.|+..+..+++.......-. -+-+-.++..|.. ...|--...| +.-.|. -.|+...|.+++... . ..-+
T Consensus 566 ~~~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~-~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v 643 (886)
T KOG4507|consen 566 AKMPDDHARKILLSRINNYTIPEEEIGSFLFHAINK-PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDV 643 (886)
T ss_pred ccCchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC-CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcc
Confidence 3346666666666533322211 2223334433432 2233222222 222333 347777777777664 1 1223
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047221 298 YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377 (509)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 377 (509)
..-.|.....+.|....|..++.+-.... .....++-.+.++|.-..+++.|++-|++..+.. +-+.+.-+.|...-|
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 34455566666777778888887766554 4445667777888888888888888888777652 224455555554433
No 398
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=43.01 E-value=2.7e+02 Score=25.69 Aligned_cols=156 Identities=16% Similarity=0.111 Sum_probs=0.0
Q ss_pred HhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCh
Q 047221 307 CRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR----NCHPDAITYEIFIVYSCRVGKF 382 (509)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~~ 382 (509)
.+++++++|++++..--.. +.+.|+...|-++-..|.+. +.+.|......++..+...+.-
T Consensus 1 v~~kky~eAidLL~~Ga~~---------------ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~ 65 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGALI---------------LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE 65 (260)
T ss_dssp HHTT-HHHHHHHHHHHHHH---------------HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT
T ss_pred CccccHHHHHHHHHHHHHH---------------HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC
Q ss_pred H-HHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 047221 383 D-VAFNFFNQMVKR--------GLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPV 453 (509)
Q Consensus 383 ~-~a~~~~~~m~~~--------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 453 (509)
+ +-..+.+.+++- | |......+...|.+.|++.+|+..| -.+-.++...+..++.-....|...
T Consensus 66 ~p~r~~fi~~ai~WS~~~~~~~G---dp~LH~~~a~~~~~e~~~~~A~~Hf----l~~~~~~~~~~~~ll~~~~~~~~~~ 138 (260)
T PF04190_consen 66 EPERKKFIKAAIKWSKFGSYKFG---DPELHHLLAEKLWKEGNYYEAERHF----LLGTDPSAFAYVMLLEEWSTKGYPS 138 (260)
T ss_dssp -TTHHHHHHHHHHHHHTSS-TT-----HHHHHHHHHHHHHTT-HHHHHHHH----HTS-HHHHHHHHHHHHHHHHHTSS-
T ss_pred cchHHHHHHHHHHHHccCCCCCC---CHHHHHHHHHHHHhhccHHHHHHHH----HhcCChhHHHHHHHHHHHHHhcCCc
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 454 MAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 454 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
++ ..-....+--|.-.|+...|..+++...+
T Consensus 139 e~---------------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 139 EA---------------DLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp -H---------------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred ch---------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
No 399
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.90 E-value=3.4e+02 Score=26.76 Aligned_cols=56 Identities=23% Similarity=0.258 Sum_probs=39.9
Q ss_pred HHHHhcCCccHHHHHHHHHHHcCCCCChH--HHHHHHHHHH--hcCChHHHHHHHHHHHhC
Q 047221 304 KEMCRRCDFKGPRDLLVEMRQVGCEPITL--TYNYVLGVLC--KNGQDADACELLEEMLGR 360 (509)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~--~~g~~~~a~~~~~~m~~~ 360 (509)
..+.+.+++..|.++|+++... +.++.. .+..+..+|. ...++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445789999999999999887 555544 4455555554 466788888888877665
No 400
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.76 E-value=1.7e+02 Score=30.83 Aligned_cols=75 Identities=16% Similarity=0.128 Sum_probs=55.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChH------HHHHHHHHHHHCCCCCCHHHHHHH
Q 047221 336 YVLGVLCKNGQDADACELLEEMLGR--NCHPDAITYEIFIVYSCRVGKFD------VAFNFFNQMVKRGLQPRLATHAAF 407 (509)
Q Consensus 336 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~p~~~~~~~l 407 (509)
+|+.+|...|++-.+.++++..... |-+.-...||..|+...+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8899999999999999999888764 44444667888888888888754 3444444443 44588888888
Q ss_pred HHHHHH
Q 047221 408 IKGYFI 413 (509)
Q Consensus 408 i~~~~~ 413 (509)
+++-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 877554
No 401
>PHA03100 ankyrin repeat protein; Provisional
Probab=42.62 E-value=3.8e+02 Score=27.18 Aligned_cols=212 Identities=9% Similarity=0.019 Sum_probs=102.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhhhCCCccCHHHH--HHHHHHH-----HhccCCHHHHHHHHHHHHHcCCCCCHHHH--HH
Q 047221 201 VIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAF--GFLPVLI-----SSKALTKKGIWRVVEVLNQVGGSCLVSGV--RA 271 (509)
Q Consensus 201 li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~--~~ll~~~-----~~~~~~~~~a~~~~~~m~~~g~~~~~~~~--~~ 271 (509)
.+...++.|+.+-+..+ .+.|..|+.... ...+. + +...+ ..++.+.+.+.|..++.... .+
T Consensus 38 ~L~~A~~~~~~~ivk~L----l~~g~~~~~~~~~~~t~L~-~~~~~~a~~~~----~~~iv~~Ll~~ga~i~~~d~~g~t 108 (480)
T PHA03100 38 PLYLAKEARNIDVVKIL----LDNGADINSSTKNNSTPLH-YLSNIKYNLTD----VKEIVKLLLEYGANVNAPDNNGIT 108 (480)
T ss_pred hhhhhhccCCHHHHHHH----HHcCCCCCCccccCcCHHH-HHHHHHHHhhc----hHHHHHHHHHCCCCCCCCCCCCCc
Confidence 34455667776554444 456776654432 22333 2 22333 23444555566655433211 23
Q ss_pred HHHHHH--hcCCHHHHHHHHHHc-CC---CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHH--HHHHHHHHh
Q 047221 272 LIEMFS--VLGLYEMAKYVIKKT-ER---KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY--NYVLGVLCK 343 (509)
Q Consensus 272 li~~~~--~~g~~~~A~~~~~~m-~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~ 343 (509)
.+...+ ..|+.+-+..+++.- .. +..-+ ..+...+..|. .-.++++.+.+.|..++...- .+.+...+.
T Consensus 109 pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~ 185 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGE-NLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVE 185 (480)
T ss_pred hhhHHHhcccChHHHHHHHHHcCCCCCccCCCCC-cHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence 334444 777877777776652 11 22222 34445555552 234456666677766654322 234555666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHH--------HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHH
Q 047221 344 NGQDADACELLEEMLGRNCHPDAIT--------YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLA---THAAFIKGYF 412 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~~~g~~p~~~~--------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~ 412 (509)
.|+.+ +.+.+.+.|..++... +.+.+...+..|. ...++.+.+.+.|..++.. -.+.|. ..+
T Consensus 186 ~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~TpL~-~A~ 258 (480)
T PHA03100 186 KGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTPLH-YAV 258 (480)
T ss_pred hCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCHHH-HHH
Confidence 67654 4444555666554321 1333444445555 1134445555666655432 233333 334
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC
Q 047221 413 IFYRYEDAYKYVVLSADKYKSSS 435 (509)
Q Consensus 413 ~~g~~~~A~~~~~~m~~~~~~p~ 435 (509)
..|+.+-+..+ .+.|..++
T Consensus 259 ~~~~~~iv~~L----l~~gad~n 277 (480)
T PHA03100 259 YNNNPEFVKYL----LDLGANPN 277 (480)
T ss_pred HcCCHHHHHHH----HHcCCCCC
Confidence 56665544443 45555444
No 402
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=42.50 E-value=4.5e+02 Score=27.98 Aligned_cols=87 Identities=13% Similarity=0.143 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcC---CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcC-CCCChHHHHHHHHHHHhc--
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKTE---RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVG-CEPITLTYNYVLGVLCKN-- 344 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~-- 344 (509)
....++.-+|++|.|.+.+-+.+ .|.+.+...+..|.-.+-.+... ..+.... -.|...-+..||..|++.
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 34455667899999999887743 34555555554433222111111 2222111 011226688899999874
Q ss_pred -CChHHHHHHHHHHHhC
Q 047221 345 -GQDADACELLEEMLGR 360 (509)
Q Consensus 345 -g~~~~a~~~~~~m~~~ 360 (509)
.+..+|.+.+--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 5678888888766654
No 403
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=42.13 E-value=1.5e+02 Score=29.49 Aligned_cols=57 Identities=18% Similarity=0.326 Sum_probs=27.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHC--C----CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047221 372 FIVYSCRVGKFDVAFNFFNQMVKR--G----LQP-RLATHAAFIKGYFIFYRYEDAYKYVVLSA 428 (509)
Q Consensus 372 li~~~~~~g~~~~a~~~~~~m~~~--g----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (509)
|++.++-.||+..|+++++.+.-. + +.+ .+.++--+--+|...+++.+|.+.|....
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666665543211 1 000 12233334445555566666666665443
No 404
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.08 E-value=5.2e+02 Score=28.66 Aligned_cols=166 Identities=13% Similarity=0.151 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCCHHHHH--
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGRN---CHPDAITYEIFIVYSCRVGKF--DVAFNFFNQMVKRGLQPRLATHA-- 405 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~-- 405 (509)
-|..|+..|...|+.++|+++|.+..+.- -..-...+--++.-..+.+.. +-+++.-+...+..-.-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47899999999999999999999988742 111112233355555555544 44444444333321110011111
Q ss_pred ----------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--------CChHHHHHH--HHH---H
Q 047221 406 ----------AFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKN--------NNPVMAKNV--LSE---M 462 (509)
Q Consensus 406 ----------~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~--~~~---m 462 (509)
.-+-.|......+.+..+++.+....-.++....+.++..|+.. ++.+++.+. .++ +
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~ 665 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDF 665 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHH
Confidence 12334566777888888999888777677777788888888743 223445444 222 2
Q ss_pred HH--CCCCcC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 463 MK--NGLRPN--------VSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 463 ~~--~g~~p~--------~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
.+ ..+.|. ..-|.-..-.+.+.|+-++|+.++-...
T Consensus 666 l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 666 LESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred hhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 21 123222 2223333333458888999988875544
No 405
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=41.62 E-value=4.6e+02 Score=27.85 Aligned_cols=190 Identities=13% Similarity=0.080 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHh-hccCCCCccChhHHHHHHHHHh-ccCCHHHHHHHHHHhhhCCCccCHH----HH
Q 047221 160 NASVIEILRVLNSEKVSALCFLKYM-REIMPEFYKNSDICSLVIDNCG-RLDDYETMRQLLNDFNVYQVCLNEK----AF 233 (509)
Q Consensus 160 ~~~~~~ll~~~~~~~~~A~~~~~~~-~~~~p~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~~~~p~~~----~~ 233 (509)
...|..+|.. |++-++.+ .+..+.....+.++--+...+. ...++++|+..+++.....-.++-. ..
T Consensus 30 l~~Y~kLI~~-------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~ 102 (608)
T PF10345_consen 30 LKQYYKLIAT-------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRC 102 (608)
T ss_pred HHHHHHHHHH-------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3455555554 44445555 2444444445556666777766 6788999999998764332222221 22
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHc------CCC--HHHHH
Q 047221 234 GFLPVLISSKALTKKGIWRVVEVLNQV----GGSCLVSGVRAL-IEMFSVLGLYEMAKYVIKKT------ERK--VSYYN 300 (509)
Q Consensus 234 ~~ll~~~~~~~~~~~~a~~~~~~m~~~----g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m------~~~--~~~~~ 300 (509)
..++.-+..+.+ ...|...++...+. +..+-...+.-+ +..+...++...|.+.++.+ ..| +..+-
T Consensus 103 ~~ll~~i~~~~~-~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTN-PKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 223332444555 44488887776542 222223333333 33333347999999988876 122 34444
Q ss_pred HHHHHHHh--cCCccHHHHHHHHHHHcCC---------CCChHHHHHHHHHHH--hcCChHHHHHHHHHH
Q 047221 301 ILIKEMCR--RCDFKGPRDLLVEMRQVGC---------EPITLTYNYVLGVLC--KNGQDADACELLEEM 357 (509)
Q Consensus 301 ~li~~~~~--~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~li~~~~--~~g~~~~a~~~~~~m 357 (509)
.++.+... .+..+++.+.++++..... .|-..+|..++..++ ..|+++.+...++++
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55554443 4556778888877743321 345677777776655 457766666655554
No 406
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.32 E-value=3.1e+02 Score=25.82 Aligned_cols=24 Identities=8% Similarity=0.056 Sum_probs=15.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH
Q 047221 398 QPRLATHAAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 398 ~p~~~~~~~li~~~~~~g~~~~A~ 421 (509)
.-|...|..++.+|.-.|+.+.+.
T Consensus 194 ~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 194 DFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred hCCHHHHHHHHHHHHHHhhhHHHH
Confidence 346667777777777777655544
No 407
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=40.80 E-value=8.1e+02 Score=30.50 Aligned_cols=147 Identities=11% Similarity=0.059 Sum_probs=72.6
Q ss_pred HHHHHhcCCccHHHHHHHHH----HHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047221 303 IKEMCRRCDFKGPRDLLVEM----RQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR 378 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 378 (509)
..+-.+.+.+.+|+..++.- ... .....-|..+...|+..+++|...-+...-.. +...+ .-|.....
T Consensus 1390 a~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1390 ARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 33445556666666666652 111 12233344455567777777766666553111 11122 22334455
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhCCChHHHH
Q 047221 379 VGKFDVAFNFFNQMVKRGLQPR-LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLL-ASLHDKNNNPVMAK 456 (509)
Q Consensus 379 ~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~ 456 (509)
.|++..|...|+.+.+. .|+ ..+++.++..-...|.++.+.-..+..... ..++...|+.+ +.+-.+.++++...
T Consensus 1462 ~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 67777777777777655 333 455665555555556666655544433322 12222222222 22334556665555
Q ss_pred HHHH
Q 047221 457 NVLS 460 (509)
Q Consensus 457 ~~~~ 460 (509)
+...
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 5544
No 408
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=40.58 E-value=4.6e+02 Score=27.54 Aligned_cols=64 Identities=8% Similarity=0.114 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHhcCCc-hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCc
Q 047221 158 LSNASVIEILRVLNSEKV-SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVC 227 (509)
Q Consensus 158 ~~~~~~~~ll~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~ 227 (509)
+....|..+++.+..... .-.+++..+.. .+ ...+..++++....|-.....-+.+.+....+.
T Consensus 308 ~~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~-----~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~ 372 (574)
T smart00638 308 PAAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KK-----KKARRIFLDAVAQAGTPPALKFIKQWIKNKKIT 372 (574)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 466778888888887775 45566666633 32 227888888888888877777776666655543
No 409
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=39.74 E-value=2.5e+02 Score=28.44 Aligned_cols=70 Identities=11% Similarity=-0.061 Sum_probs=47.5
Q ss_pred cCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcC-CH
Q 047221 208 LDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSG----VRALIEMFSVLG-LY 282 (509)
Q Consensus 208 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g-~~ 282 (509)
..++++|++..++..+.+-..+. +-...+..+++++.+.|+.||..| ....++.|+=.| .+
T Consensus 207 ~~~ldeal~~~~~a~~~~~~~SI--------------g~~GNaadv~~~l~~r~i~pDlvtDQTSaHdp~~GY~P~g~t~ 272 (545)
T TIGR01228 207 TDSLDEALARAEEAKAEGKPISI--------------GLLGNAAEVLPELLKRGVVPDVVTDQTSAHDPLNGYIPEGYTV 272 (545)
T ss_pred cCCHHHHHHHHHHHHHcCCceEE--------------EeeccHHHHHHHHHHcCCCCCCcCCCCcccCcccccCCCCCCH
Confidence 45788888888887776543221 125567888888888898888765 334455677777 67
Q ss_pred HHHHHHHHH
Q 047221 283 EMAKYVIKK 291 (509)
Q Consensus 283 ~~A~~~~~~ 291 (509)
+++.++..+
T Consensus 273 ee~~~lr~~ 281 (545)
T TIGR01228 273 EDADKLRQE 281 (545)
T ss_pred HHHHHHHHh
Confidence 777766543
No 410
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.72 E-value=1.8e+02 Score=22.69 Aligned_cols=75 Identities=12% Similarity=0.050 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 047221 247 KKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERKVSYYNILIKEMCRRCDFKGPRDLLVEMR 323 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (509)
.++|..+.+.+...+. -...+--+-+..+.+.|++++| +.... -||...|-+|-. .+.|.-+++...+.++.
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 6677777766666543 2222223444455666777777 22222 355565554432 35566666666666665
Q ss_pred HcC
Q 047221 324 QVG 326 (509)
Q Consensus 324 ~~g 326 (509)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 554
No 411
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.66 E-value=1.8e+02 Score=22.68 Aligned_cols=30 Identities=10% Similarity=-0.005 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 433 SSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 433 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
.||...|-+|.. .+.|..+++...+.++..
T Consensus 68 ~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 68 YPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred CccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 344444444333 245555555555554443
No 412
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=39.57 E-value=1.9e+02 Score=27.33 Aligned_cols=70 Identities=7% Similarity=0.070 Sum_probs=43.1
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----------cCCHHHH
Q 047221 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFI----------FYRYEDA 420 (509)
Q Consensus 351 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~g~~~~A 420 (509)
.++++.|...++.|.-.++.-+.-.+.+.=.+.++..+++.+..... -|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-----rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-----RFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-----hhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 35666676777777777766666666666667777777777654322 24444444432 4777777
Q ss_pred HHHHH
Q 047221 421 YKYVV 425 (509)
Q Consensus 421 ~~~~~ 425 (509)
+++++
T Consensus 338 mkLLQ 342 (370)
T KOG4567|consen 338 MKLLQ 342 (370)
T ss_pred HHHHh
Confidence 77763
No 413
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=38.78 E-value=3.3e+02 Score=25.37 Aligned_cols=149 Identities=10% Similarity=-0.052 Sum_probs=72.4
Q ss_pred hcCCHHHHHHHHHHcC--CCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCCh
Q 047221 278 VLGLYEMAKYVIKKTE--RKVSYYNILIKEMCR----RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK----NGQD 347 (509)
Q Consensus 278 ~~g~~~~A~~~~~~m~--~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~ 347 (509)
..+.+..+...+.... .+......+...|.. ..+..+|.++|..+-+.|.. .....|...|.. ..+.
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCH
Confidence 3456677777776653 233333334444433 23456677777766655532 222223333333 2356
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCC
Q 047221 348 ADACELLEEMLGRNCHPDAITYEIFIVYSCRVG-------KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFI----FYR 416 (509)
Q Consensus 348 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~ 416 (509)
.+|.+.|+...+.|..+...+...+-..|.... +...|...+.++...+ +......|-..|.. ..+
T Consensus 130 ~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 130 VKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcC
Confidence 667777776666664433222333333333221 2224666666665555 33344444444433 225
Q ss_pred HHHHHHHHHHHHhCCC
Q 047221 417 YEDAYKYVVLSADKYK 432 (509)
Q Consensus 417 ~~~A~~~~~~m~~~~~ 432 (509)
.++|...|+...+.|.
T Consensus 207 ~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 207 LKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 5666666666655553
No 414
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=38.45 E-value=1.2e+02 Score=23.56 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=8.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHc
Q 047221 272 LIEMFSVLGLYEMAKYVIKKT 292 (509)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m 292 (509)
++.-|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 333444444444444444443
No 415
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.37 E-value=1.8e+02 Score=24.10 Aligned_cols=63 Identities=11% Similarity=-0.039 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047221 352 ELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415 (509)
Q Consensus 352 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 415 (509)
++...+.+.|.+++.. -..++..+.+.++.-.|.++++++.+.+...+..|.-.-++.+...|
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445556667665543 33556666666666777888888777765555554444455555544
No 416
>PRK09857 putative transposase; Provisional
Probab=38.36 E-value=2.5e+02 Score=26.54 Aligned_cols=65 Identities=8% Similarity=-0.016 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047221 370 EIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSS 435 (509)
Q Consensus 370 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 435 (509)
..++....+.++.++..++++.+.+. .........++.+-+.+.|..+++.++..+|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 34444444555555555665555543 222223333444555555554555555555555555443
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.83 E-value=1.7e+02 Score=21.87 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=13.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+.......|+.++|++.+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444556777777777666654
No 418
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=37.78 E-value=2.4e+02 Score=25.79 Aligned_cols=57 Identities=12% Similarity=0.034 Sum_probs=27.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047221 336 YVLGVLCKNGQDADACELLEEMLGR----N-CHPDAITYEIFIVYSCRVGKFDVAFNFFNQM 392 (509)
Q Consensus 336 ~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 392 (509)
.|..-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.+....+--+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444455555555555555554321 2 1222334444555555566666555544443
No 419
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.91 E-value=4.9e+02 Score=26.88 Aligned_cols=57 Identities=11% Similarity=0.023 Sum_probs=38.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCCC---HHH---HHHHHHHHHhcCCccHHHHHHHHHHHc
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKTERK---VSY---YNILIKEMCRRCDFKGPRDLLVEMRQV 325 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (509)
...|+.-|.+.+++++|..++..|.-| ... .+.+.+...+..--++.+..++.+...
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 346888999999999999999999755 223 344445555555455555566655543
No 420
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=36.59 E-value=4.6e+02 Score=26.37 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=15.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHh
Q 047221 198 CSLVIDNCGRLDDYETMRQLLNDF 221 (509)
Q Consensus 198 ~~~li~~~~~~g~~~~A~~l~~~m 221 (509)
...+|.-|...|+..+..+.++++
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHc
Confidence 345666666677766666666654
No 421
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.16 E-value=4e+02 Score=25.55 Aligned_cols=109 Identities=11% Similarity=-0.011 Sum_probs=60.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHH
Q 047221 344 NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATH--AAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~ 421 (509)
..-+.+|+++|++..+. ...+|+. -..+...|... +.+.++ ..++.+| ..|.-+-.+.|+..+|.
T Consensus 229 a~Ti~~AE~l~k~ALka----~e~~yr~-sqq~qh~~~~~------da~~rR--Dtnvl~YIKRRLAMCARklGrlrEA~ 295 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKA----GETIYRQ-SQQCQHQSPQH------EAQLRR--DTNVLVYIKRRLAMCARKLGRLREAV 295 (556)
T ss_pred hhhHHHHHHHHHHHHHH----HHHHHhh-HHHHhhhccch------hhhhhc--ccchhhHHHHHHHHHHHHhhhHHHHH
Confidence 34466788888877765 2334441 11222222222 223333 2244444 34444556789999999
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 422 KYVVLSADKYK-SSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 422 ~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
++|+++.+.-. ..-...-..||.++....-+.++..++-+.-+.
T Consensus 296 K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdi 340 (556)
T KOG3807|consen 296 KIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDI 340 (556)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99988765421 111123345788888777777777777666554
No 422
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=35.81 E-value=3e+02 Score=24.10 Aligned_cols=17 Identities=24% Similarity=0.135 Sum_probs=13.2
Q ss_pred hCCChHHHHHHHHHHHH
Q 047221 448 KNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 448 ~~g~~~~a~~~~~~m~~ 464 (509)
+.|+++.|.+.++-|.+
T Consensus 133 ~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 133 RKGSFEEAERFLKFMEK 149 (204)
T ss_pred HhccHHHHHHHHHHHHH
Confidence 56888888888887764
No 423
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=35.71 E-value=3.1e+02 Score=24.18 Aligned_cols=124 Identities=10% Similarity=0.090 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047221 366 AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLA-THAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLAS 444 (509)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 444 (509)
....+.++..|.-.|+++.|.+.|.-+.+.. ..|.. .|..=+..+.+.+.-....+. ++.++.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~f---------------l~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEF---------------LEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHH---------------HHHHHH
Confidence 3456777888888888888888888887653 34433 233333344443333333233 334444
Q ss_pred HHHhCCChHHHHHHH--HHHHHCC---CCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047221 445 LHDKNNNPVMAKNVL--SEMMKNG---LRPNVS---VYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSS 505 (509)
Q Consensus 445 ~~~~~g~~~~a~~~~--~~m~~~g---~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 505 (509)
.|.......+..... .-.-+.| ..|... .|..+++.-.+....+++.++.++|.+.=+.|-
T Consensus 105 ~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PP 173 (199)
T PF04090_consen 105 FYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPP 173 (199)
T ss_pred HHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 444322222211111 0000111 123211 223333333344456778888888888766654
No 424
>PRK11619 lytic murein transglycosylase; Provisional
Probab=35.34 E-value=5.9e+02 Score=27.30 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=15.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 047221 478 LKHLHTSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 478 l~~~~~~g~~~~a~~~~~~m~~~ 500 (509)
+..+...|+..+|...+..+.+.
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc
Confidence 34556778888888777776653
No 425
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=35.19 E-value=1.5e+02 Score=22.89 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=7.6
Q ss_pred HHHHHhcCCccHHHHHHHH
Q 047221 303 IKEMCRRCDFKGPRDLLVE 321 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~ 321 (509)
+..|...|+.++|..-+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444444444444433
No 426
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.04 E-value=2.4e+02 Score=22.66 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=6.8
Q ss_pred HHHHHHhCCChHHHHHHH
Q 047221 442 LASLHDKNNNPVMAKNVL 459 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~ 459 (509)
....+...|++++|.++|
T Consensus 105 wA~~le~~~~~~~A~~I~ 122 (126)
T PF08311_consen 105 WAEFLEKRGNFKKADEIY 122 (126)
T ss_dssp HHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 333333444444444443
No 427
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.52 E-value=82 Score=21.95 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047221 365 DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412 (509)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (509)
+...++.++..+++..-.++++..+.+..+.|. .+..+|---+..++
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 344455555555555555555555555555542 33444444444443
No 428
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=33.92 E-value=2.6e+02 Score=23.83 Aligned_cols=65 Identities=6% Similarity=-0.095 Sum_probs=45.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 047221 390 NQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMA 455 (509)
Q Consensus 390 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 455 (509)
+.+.+.|++.+..=. +++..+...++.-.|.++++.+.+.+...+..|..-.+..+...|-+.+.
T Consensus 15 ~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 15 KLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 335566777765443 45555555666778999999998888777777766677888888876543
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.91 E-value=2.5e+02 Score=22.55 Aligned_cols=61 Identities=10% Similarity=0.031 Sum_probs=42.4
Q ss_pred ccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047221 227 CLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLV-SGVRALIEMFSVLGLYEMAKYVIKK 291 (509)
Q Consensus 227 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 291 (509)
.-|..-...-+. ++. ...++..+|..|...|+.... .-|......+...|++++|.++|+.
T Consensus 63 ~nD~RylkiWi~-ya~---~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 63 KNDERYLKIWIK-YAD---LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp TT-HHHHHHHHH-HHT---TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHH-HHH---HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 345555555555 433 244899999999988766554 4577888888899999999998864
No 430
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=33.39 E-value=2.1e+02 Score=21.43 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=19.7
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHc
Q 047221 289 IKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV 325 (509)
Q Consensus 289 ~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 325 (509)
.+.-+.|...--.+...+...|++++|++.+-++.+.
T Consensus 15 ~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 15 LAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3333455555555556666666666666666555544
No 431
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=33.19 E-value=5.6e+02 Score=26.47 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=27.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhcCCchHHHHHHHhh
Q 047221 149 SKLLSMSVSLSNASVIEILRVLNSEKVSALCFLKYMR 185 (509)
Q Consensus 149 ~~l~~~~~~~~~~~~~~ll~~~~~~~~~A~~~~~~~~ 185 (509)
..+...++..+...+..+.+.-...-++|+.+++++.
T Consensus 189 ~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i 225 (515)
T COG2812 189 AILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAI 225 (515)
T ss_pred HHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHH
Confidence 4555567888888877777766555578999999983
No 432
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=33.14 E-value=4.7e+02 Score=25.56 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=33.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHH
Q 047221 338 LGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC-RVGKFDVAFNFFNQMVK 394 (509)
Q Consensus 338 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~ 394 (509)
|....+.|-+..|+++-+-+..-...-|......+|+.|+ +.++++--+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 3445666777777777766666544445555555666554 45566666666665443
No 433
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.11 E-value=5.1e+02 Score=25.87 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=21.2
Q ss_pred HHHHHHHHh---cCCccHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 047221 300 NILIKEMCR---RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGV 340 (509)
Q Consensus 300 ~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 340 (509)
..+++++.+ .++.+.|+..+..|.+.|..|....-..++.+
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 334444443 35666666666666666655554433333333
No 434
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=32.94 E-value=3.7e+02 Score=24.39 Aligned_cols=58 Identities=10% Similarity=0.052 Sum_probs=30.7
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCChHHHHHHHHHHHh
Q 047221 302 LIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK-NGQDADACELLEEMLG 359 (509)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~a~~~~~~m~~ 359 (509)
++..+-+.|+++++.+.++++...+...+..=-+.+-.+|-. .|....+++++..+.+
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 445556667777777777777766655555444444444422 2344445555554443
No 435
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=32.86 E-value=3.3e+02 Score=23.62 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 047221 348 ADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG 396 (509)
Q Consensus 348 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 396 (509)
++|...|+...+. .|+..+|+.-+... ++|-+++.++.+.+
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 3444444444443 56666776666655 23555555555554
No 436
>PRK13342 recombination factor protein RarA; Reviewed
Probab=32.35 E-value=5.2e+02 Score=25.78 Aligned_cols=32 Identities=9% Similarity=-0.012 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047221 415 YRYEDAYKYVVLSADKYKSSSNMLYSLLASLH 446 (509)
Q Consensus 415 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 446 (509)
++.+.|+.++..|.+.|..|....-..++.++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45555555555555555555444433333333
No 437
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=31.83 E-value=2.2e+02 Score=21.29 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=11.4
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 047221 375 YSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 375 ~~~~~g~~~~a~~~~~~m~ 393 (509)
.....|+.++|...+++.+
T Consensus 50 ~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 3445566666666666654
No 438
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.76 E-value=4.4e+02 Score=24.79 Aligned_cols=71 Identities=10% Similarity=0.009 Sum_probs=49.8
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhhh----CCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 047221 195 SDICSLVIDNCGRLDDYETMRQLLNDFNV----YQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCL 265 (509)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 265 (509)
.+.|-.+...|++.++.+.+.+..++..+ .|.+.|....-.-+........-+++-++..+.|.+.|...+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 44788899999999998888877766543 477777666555555444444446777778888888775543
No 439
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.70 E-value=4.4e+02 Score=24.78 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047221 366 AITYEIFIVYSCRVGKFDVAFNFFNQMVK----RGLQPRLATHAA-FIKGYFIFYRYEDAYKYVVLSADKYK 432 (509)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~ 432 (509)
...+..+..-|++.++.+.+.++.++..+ .|.+.|+...-+ |--.|....-+++-++..+.|.++|.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGg 186 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGG 186 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC
Confidence 44556666677777777666666554433 355555432221 11223333334555666666666654
No 440
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=31.29 E-value=4.6e+02 Score=24.79 Aligned_cols=108 Identities=18% Similarity=0.047 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHH
Q 047221 382 FDVAFNFFNQMVKRGL----QPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKN 457 (509)
Q Consensus 382 ~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 457 (509)
.++|.+.|++....+. ..+......++....+.|+.+.-..+++..... .+..--..++.+++...+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 5778888888887522 345566666777777888877666666665543 256667889999999999998899
Q ss_pred HHHHHHHCC-CCcCHHHHHHHHHHHHhcCC--HHHHHHHH
Q 047221 458 VLSEMMKNG-LRPNVSVYRRVLKHLHTSHQ--EHMAKCLS 494 (509)
Q Consensus 458 ~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~--~~~a~~~~ 494 (509)
+++.....+ +++.. . ..++.++...+. .+.+.+.+
T Consensus 223 ~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~ 260 (324)
T PF11838_consen 223 LLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFF 260 (324)
T ss_dssp HHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHH
T ss_pred HHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHH
Confidence 999888854 54443 3 344445553333 25555544
No 441
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=31.24 E-value=1.3e+02 Score=23.47 Aligned_cols=48 Identities=13% Similarity=-0.187 Sum_probs=32.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 047221 406 AFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPV 453 (509)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 453 (509)
.+++.....+..-.|.++++.+.+.+...+..|.--.+..+...|-..
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355555555666678888888877776667766666667777766554
No 442
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=31.21 E-value=3.5e+02 Score=27.49 Aligned_cols=22 Identities=0% Similarity=-0.277 Sum_probs=15.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC
Q 047221 481 LHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 481 ~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
|...|.-.++-..|++|.+.|-
T Consensus 403 wlg~~eR~~~~l~fNe~V~~Ge 424 (545)
T TIGR01228 403 WLGYGERAKLGLAINEMVRSGE 424 (545)
T ss_pred hcCccHHHHHHHHHHHHHHcCC
Confidence 4555666677778889988773
No 443
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=30.69 E-value=1.2e+02 Score=22.11 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=3.6
Q ss_pred HHHHHCCCCC
Q 047221 390 NQMVKRGLQP 399 (509)
Q Consensus 390 ~~m~~~g~~p 399 (509)
+.+.+.|..+
T Consensus 76 ~~Ll~~g~~~ 85 (89)
T PF12796_consen 76 KLLLEHGADV 85 (89)
T ss_dssp HHHHHTTT-T
T ss_pred HHHHHcCCCC
Confidence 3333444433
No 444
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=30.15 E-value=3.2e+02 Score=23.31 Aligned_cols=58 Identities=9% Similarity=-0.081 Sum_probs=27.5
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047221 358 LGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416 (509)
Q Consensus 358 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 416 (509)
.+.|+..+..-. +++..+...++.-.|.++++.+.+.+...+..|.---++.+...|-
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 344554443322 3333333444445566666666655554454444444455555443
No 445
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.70 E-value=90 Score=21.77 Aligned_cols=46 Identities=13% Similarity=0.162 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 047221 437 MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHT 483 (509)
Q Consensus 437 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 483 (509)
..++-++..+++-.-.++++..+.++.+.|. .+..+|.--++.+++
T Consensus 9 ~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 9 PLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444444544444445555555555555443 234444444444443
No 446
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.66 E-value=7.5e+02 Score=26.80 Aligned_cols=224 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHc-----CCC---HHHHHHHHHHHHhcCCccHHHHHH
Q 047221 251 WRVVEVLNQVGGSCLVSGVRALIEMFSVLGLY---EMAKYVIKKT-----ERK---VSYYNILIKEMCRRCDFKGPRDLL 319 (509)
Q Consensus 251 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m-----~~~---~~~~~~li~~~~~~g~~~~A~~~~ 319 (509)
.++-+.+....+......-...++-..++.++ ++-...+.+| .|+ ..+...++-.|....+++..+++.
T Consensus 145 ~R~kq~Lk~vq~~ssah~REkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLV 224 (1226)
T KOG4279|consen 145 HRMKQVLKSVQVESSAHSREKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLV 224 (1226)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHH
Q ss_pred HHHHHcCCCCC----------hHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHH-------HHHHHHHcC
Q 047221 320 VEMRQVGCEPI----------TLTYNYVLGVLCKNGQDADACELLEEMLGR--NCHPDAITYEI-------FIVYSCRVG 380 (509)
Q Consensus 320 ~~m~~~g~~p~----------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~-------li~~~~~~g 380 (509)
+.+++ -|| .+.|.-.++---+-|+-++|+.+.-.|.+. .+.||.....- +-+.|...+
T Consensus 225 e~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~ 301 (1226)
T KOG4279|consen 225 EDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAE 301 (1226)
T ss_pred HHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchh
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 047221 381 KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLS 460 (509)
Q Consensus 381 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 460 (509)
..+.|.++|++.-+. .|+..+--.+...+...|.-=+--.-++.+--. |-..+++.|.+++..++|+
T Consensus 302 s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~~Fens~Elq~Igmk-----------Ln~LlgrKG~leklq~YWd 368 (1226)
T KOG4279|consen 302 SLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGEHFENSLELQQIGMK-----------LNSLLGRKGALEKLQEYWD 368 (1226)
T ss_pred hHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhhhccchHHHHHHHHH-----------HHHHhhccchHHHHHHHHh
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 461 EMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 461 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
....+.+-.-+.++.+|.+.-+.|-+....
T Consensus 369 -------------V~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 369 -------------VATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred -------------HHHhhhhhhhccCHHHHHHHHHHHhccCCc
No 447
>PRK09857 putative transposase; Provisional
Probab=29.64 E-value=4.9e+02 Score=24.59 Aligned_cols=66 Identities=8% Similarity=0.013 Sum_probs=34.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcC
Q 047221 404 HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN 470 (509)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 470 (509)
+..++.-..+.|+.++..++++.+.+. ........-.+..-+.+.|.-++++++.++|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444445556665566666555543 222222233455555555655666666666666665544
No 448
>PRK09462 fur ferric uptake regulator; Provisional
Probab=29.43 E-value=3.3e+02 Score=22.51 Aligned_cols=63 Identities=11% Similarity=-0.068 Sum_probs=40.6
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 047221 390 NQMVKRGLQPRLATHAAFIKGYFIF-YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPV 453 (509)
Q Consensus 390 ~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 453 (509)
+.+.+.|++++..= .+++..+... +..-.|.++++.+.+.+...+..|.--.+..+...|-..
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34556677765543 3355555543 456788888888888777667776666677777776553
No 449
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.38 E-value=6.4e+02 Score=25.86 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 047221 247 KKGIWRVVEVLNQVGGSCL 265 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g~~~~ 265 (509)
...+..++.+|.+.|..|.
T Consensus 264 ~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 264 HSKSLEILESLYQEGQDIY 282 (484)
T ss_pred HHHHHHHHHHHHHcCCCHH
Confidence 3455555555555554443
No 450
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=28.71 E-value=6.8e+02 Score=27.08 Aligned_cols=86 Identities=6% Similarity=-0.107 Sum_probs=55.7
Q ss_pred hHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CC----------CCHHHHHHHHHHHH
Q 047221 382 FDVAFNFFNQM-VKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY---KS----------SSNMLYSLLASLHD 447 (509)
Q Consensus 382 ~~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~----------p~~~~~~~li~~~~ 447 (509)
.++....+... .+.|+..+......++... .|++..|..+++++...| +. .+......|+.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 34555555544 4558888888777777654 599999999998876532 11 12223334555444
Q ss_pred hCCChHHHHHHHHHHHHCCCCcC
Q 047221 448 KNNNPVMAKNVLSEMMKNGLRPN 470 (509)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~g~~p~ 470 (509)
. ++...+++++++|...|+.+.
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCCHH
Confidence 3 778888888888888777554
No 451
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=28.18 E-value=1e+02 Score=26.16 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=7.1
Q ss_pred HhcCCHHHHHHHHHH
Q 047221 277 SVLGLYEMAKYVIKK 291 (509)
Q Consensus 277 ~~~g~~~~A~~~~~~ 291 (509)
+..|+.+.+..++++
T Consensus 129 ~~~~~~~~v~~~vr~ 143 (164)
T PF07840_consen 129 CEKGDYDQVPDVVRQ 143 (164)
T ss_dssp HHCT-CCGHHHHHHH
T ss_pred HHhCCHHHHHHHHHH
Confidence 344555555555544
No 452
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.94 E-value=1.3e+03 Score=28.95 Aligned_cols=63 Identities=16% Similarity=0.058 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 437 MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 437 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
.+|-...+..-++|+++.|...+-+..+.+ .| ..+.-..+.+...|+...|+.++++..+...
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 467777777778999999988877776654 23 3556667888999999999999998885543
No 453
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=27.84 E-value=5.5e+02 Score=27.73 Aligned_cols=74 Identities=9% Similarity=-0.053 Sum_probs=40.0
Q ss_pred HcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---C----------CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 047221 324 QVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRN---C----------HPDAITYEIFIVYSCRVGKFDVAFNFFN 390 (509)
Q Consensus 324 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~----------~p~~~~~~~li~~~~~~g~~~~a~~~~~ 390 (509)
+.|+..+......++... .|++..|+.+++++...| + ..+......|+.++.+ ++...++.+++
T Consensus 193 kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~ 269 (709)
T PRK08691 193 SEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQ 269 (709)
T ss_pred HcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 345555555555555433 466666666665544321 0 1122334445555443 67777777777
Q ss_pred HHHHCCCCCC
Q 047221 391 QMVKRGLQPR 400 (509)
Q Consensus 391 ~m~~~g~~p~ 400 (509)
+|...|+.+.
T Consensus 270 ~L~~~G~d~~ 279 (709)
T PRK08691 270 EMAACAVGFD 279 (709)
T ss_pred HHHHhCCCHH
Confidence 7777766443
No 454
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.81 E-value=7.3e+02 Score=26.41 Aligned_cols=85 Identities=9% Similarity=0.034 Sum_probs=55.0
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-C------------CCHHHHHHHHHHHHh
Q 047221 383 DVAFNFFNQ-MVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYK-S------------SSNMLYSLLASLHDK 448 (509)
Q Consensus 383 ~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~------------p~~~~~~~li~~~~~ 448 (509)
++..+.+++ +.+.|+..+......++.. ..|++..|+.++++....+- . .+......++.++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~- 262 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALA- 262 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH-
Confidence 444445544 4566888888777777763 45999999999887654331 1 12223334444444
Q ss_pred CCChHHHHHHHHHHHHCCCCcC
Q 047221 449 NNNPVMAKNVLSEMMKNGLRPN 470 (509)
Q Consensus 449 ~g~~~~a~~~~~~m~~~g~~p~ 470 (509)
.|+...+++++++|.+.|..|.
T Consensus 263 ~~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 263 QGDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 4788888888888888877654
No 455
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=27.65 E-value=2.6e+02 Score=20.81 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=27.8
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 457 NVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 457 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
++|+-....|+..|..+|..+++.+.-.=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 6666666666777777777776666555556666666666653
No 456
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.48 E-value=4.2e+02 Score=23.11 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhCCCCCC--HHHH-----HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 047221 347 DADACELLEEMLGRNCHPD--AITY-----EIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFI 413 (509)
Q Consensus 347 ~~~a~~~~~~m~~~g~~p~--~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 413 (509)
++.|+.+|+.+.+.--.|. .... ...+..|.+.|.+++|.++++..... |+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHH
Confidence 6789999998877643331 1122 23455788999999999999998764 354444444444333
No 457
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.38 E-value=4.3e+02 Score=23.27 Aligned_cols=88 Identities=8% Similarity=-0.049 Sum_probs=43.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 047221 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEI-----FIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFI 413 (509)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 413 (509)
..+...|++++|...++..... |....+.. |-......|.+++|+.+++.....+.. ......--+.+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHH
Confidence 3455566666666666655433 11222222 223444556666666666655544311 1112222345566
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 047221 414 FYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~ 431 (509)
.|+-++|+.-|+...+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 666666666666655554
No 458
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=26.70 E-value=1.3e+02 Score=23.80 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=21.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSH 485 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 485 (509)
++..+...+..-.|.++++.|.+.+...+..|.-.-|+.+.+.|
T Consensus 13 Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 34444444445555556666655555555554444455555444
No 459
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=26.68 E-value=2.2e+02 Score=22.83 Aligned_cols=61 Identities=11% Similarity=-0.049 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH-------HHHHHHhCC---CCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 047221 401 LATHAAFIKGYFIFYRYEDAYK-------YVVLSADKY---KSSSNMLYSLLASLHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~-------~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 461 (509)
...+..|-.++...|++++++. +|++--+.. -+.++...-.-..++...|+.++|++-|+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3445566666667777665443 333211110 011122222223455567778887777764
No 460
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=26.66 E-value=2.9e+02 Score=21.78 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=15.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC
Q 047221 373 IVYSCRVGKFDVAFNFFNQMVKRG 396 (509)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~m~~~g 396 (509)
|+-..++...++|+++++.|.+.|
T Consensus 68 iD~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 68 IDYLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhC
Confidence 444556666677777777776665
No 461
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=26.58 E-value=6.3e+02 Score=24.92 Aligned_cols=165 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred cCCccHHHHHHHHHHHc-----CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------------------CC
Q 047221 309 RCDFKGPRDLLVEMRQV-----GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNC-------------------HP 364 (509)
Q Consensus 309 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-------------------~p 364 (509)
.++.++|++-+-...+. +...+...+..++..|...++|+.--+...-+.+... .|
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~ 104 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQAIQSMVQQAMTYIDGTP 104 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCCC
Q ss_pred CHHHHHHHHHHH-------------------------HHcCChHHHHHHHHHHHHCCCCCCHHHHHHH------------
Q 047221 365 DAITYEIFIVYS-------------------------CRVGKFDVAFNFFNQMVKRGLQPRLATHAAF------------ 407 (509)
Q Consensus 365 ~~~~~~~li~~~-------------------------~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l------------ 407 (509)
|..+--.+|..+ -..|++++|..++.++ -+.||.++
T Consensus 105 d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el-------~VETygsm~~~ekV~fiLEQ 177 (439)
T KOG1498|consen 105 DLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCEL-------QVETYGSMEKSEKVAFILEQ 177 (439)
T ss_pred CchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------chhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCcCHHHHHHHHHH
Q 047221 408 IKGYFIFYRYEDAYKYVVLSADKYKSSSNM------LYSLLASLHDKNNNPVMAKNVLSEMMKNG-LRPNVSVYRRVLKH 480 (509)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~ 480 (509)
++.|.-.+++-.|--+-+++..+-+.-+.. -|+.++....+.+.+-.+.+.|+..-..| ++-|..-|...+..
T Consensus 178 mrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~ 257 (439)
T KOG1498|consen 178 MRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRS 257 (439)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhh
No 462
>PHA03100 ankyrin repeat protein; Provisional
Probab=26.53 E-value=6.2e+02 Score=25.57 Aligned_cols=228 Identities=11% Similarity=0.110 Sum_probs=107.7
Q ss_pred HHHHHHHHcCCCCCHHHH--HHHHHH-----HHhcCCHHHHHHHHHHc-C---CCHHHHHHHHHHHH-hcCCccHHHHHH
Q 047221 252 RVVEVLNQVGGSCLVSGV--RALIEM-----FSVLGLYEMAKYVIKKT-E---RKVSYYNILIKEMC-RRCDFKGPRDLL 319 (509)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~--~~li~~-----~~~~g~~~~A~~~~~~m-~---~~~~~~~~li~~~~-~~g~~~~A~~~~ 319 (509)
++++.+.+.|..++.... ...+.. .+..|..+-+.-+++.- . .|...++.|..+.. ..|+. +++
T Consensus 49 ~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~----~iv 124 (480)
T PHA03100 49 DVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSY----SIV 124 (480)
T ss_pred HHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChH----HHH
Confidence 344455556766654322 234444 56667776666665542 1 22222334443332 44443 445
Q ss_pred HHHHHcCCCCChHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCChHHHHHHHHHHHHC
Q 047221 320 VEMRQVGCEPITLTY--NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITY--EIFIVYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 320 ~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
+.+.+.|..++.... .+.+..++..|. .-.++.+.+.+.|..++.... .+.+...+..|+.+- .+.+.+.
T Consensus 125 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~i----v~~Ll~~ 198 (480)
T PHA03100 125 EYLLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDV----IKFLLDN 198 (480)
T ss_pred HHHHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHH----HHHHHHc
Confidence 555566655543221 244555566662 113455556667776654321 234455566676544 4445556
Q ss_pred CCCCCHHH--------HHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCChHHHHHHHHHH
Q 047221 396 GLQPRLAT--------HAAFIKGYFIFYR--YEDAYKYVVLSADKYKSSSN---MLYSLLASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 396 g~~p~~~~--------~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m 462 (509)
|..++... +...+...+..|+ .+-+..+ .+.|..++. .-.+.|.. .+..|+. ++++.+
T Consensus 199 ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~L----l~~g~din~~d~~g~TpL~~-A~~~~~~----~iv~~L 269 (480)
T PHA03100 199 GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYL----LSYGVPINIKDVYGFTPLHY-AVYNNNP----EFVKYL 269 (480)
T ss_pred CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHH----HHcCCCCCCCCCCCCCHHHH-HHHcCCH----HHHHHH
Confidence 66665321 1333444455565 5444433 455554432 22333333 3345553 344555
Q ss_pred HHCCCCcCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 463 MKNGLRPNVSV---YRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 463 ~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
.+.|..++... .+. +....+.|..+ +++.+.+.|..
T Consensus 270 l~~gad~n~~d~~g~tp-l~~A~~~~~~~----iv~~Ll~~g~~ 308 (480)
T PHA03100 270 LDLGANPNLVNKYGDTP-LHIAILNNNKE----IFKLLLNNGPS 308 (480)
T ss_pred HHcCCCCCccCCCCCcH-HHHHHHhCCHH----HHHHHHhcCCC
Confidence 56665554332 122 22333445543 45555556653
No 463
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=26.30 E-value=5.7e+02 Score=24.33 Aligned_cols=71 Identities=6% Similarity=0.044 Sum_probs=37.6
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----------hCCChHHH
Q 047221 386 FNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHD----------KNNNPVMA 455 (509)
Q Consensus 386 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----------~~g~~~~a 455 (509)
.++++.|.+.++.|.-.++.-+--.+.+.=.+.++..+|+.+.... .-|..|+..|| -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3455555556666665555555555555555666666666555432 11444444444 23555555
Q ss_pred HHHHHH
Q 047221 456 KNVLSE 461 (509)
Q Consensus 456 ~~~~~~ 461 (509)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 555543
No 464
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=26.12 E-value=2.2e+02 Score=22.14 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=22.1
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ 346 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 346 (509)
+..+...+..-.|.++++++.+.+...+..|.-..|+.+...|-
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 33344444444555666666555544555555444555554444
No 465
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.09 E-value=2.2e+02 Score=31.09 Aligned_cols=161 Identities=14% Similarity=0.040 Sum_probs=94.9
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047221 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRV 379 (509)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 379 (509)
.++|..+-+.|-.+-|+...+.=+ |- ...+..+|+++.|++.-..+- |..+|..|.......
T Consensus 624 qaiIaYLqKkgypeiAL~FVkD~~---------tR---F~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 624 QAIIAYLQKKGYPEIALHFVKDER---------TR---FELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQ 685 (1202)
T ss_pred HHHHHHHHhcCCcceeeeeecCcc---------hh---eeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHh
Confidence 345555555666665655443221 11 122456788887776654332 567788888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 047221 380 GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVL 459 (509)
Q Consensus 380 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 459 (509)
|+.+-|+..|++... |+.|--.|.-.|+.++-.++.+....+. |..+ ....-.-.|+.++-.+++
T Consensus 686 gn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl 750 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN---DATG---QFQNALYLGDVKERVKIL 750 (1202)
T ss_pred cchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHH
Confidence 888888888876543 3444445666788887777766554332 3221 111222357777777766
Q ss_pred HHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 460 SEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 460 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
+.. |..|- .|.. -...|.-++|.++.++..+.++
T Consensus 751 ~n~---g~~~l--aylt----a~~~G~~~~ae~l~ee~~~~~~ 784 (1202)
T KOG0292|consen 751 ENG---GQLPL--AYLT----AAAHGLEDQAEKLGEELEKQVP 784 (1202)
T ss_pred Hhc---CcccH--HHHH----HhhcCcHHHHHHHHHhhccccC
Confidence 543 43331 2221 2346888999999998887443
No 466
>PHA02798 ankyrin-like protein; Provisional
Probab=26.09 E-value=3.9e+02 Score=27.33 Aligned_cols=150 Identities=10% Similarity=0.065 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHcCCCHHH-HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChH---HHHHHHHHHHhcCChHHHHHHHHH
Q 047221 281 LYEMAKYVIKKTERKVSY-YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITL---TYNYVLGVLCKNGQDADACELLEE 356 (509)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~ 356 (509)
+++....+++...++... ...+...|...... -.++++.+.+.|..++.. -.+.|..+.........-.++.+.
T Consensus 17 ~~~~v~~ll~~~~~~~~~~~~~~~~~yl~~~~~--~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~ 94 (489)
T PHA02798 17 KLSTVKLLIKSCNPNEIVNEYSIFQKYLQRDSP--STDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKI 94 (489)
T ss_pred cHHHHHHHHhcCChhhhcccchHHHHHHhCCCC--CHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHH
Confidence 455666666544333322 12244445444332 234555556666655531 122232222221122334566666
Q ss_pred HHhCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 357 MLGRNCHPDAI---TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT--HAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 357 m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
+.+.|..++.. -.+.|.. .+..+.. .-.++.+.+.+.|..++... ..+.+..+.+.|.- .-.++.+.+.+.|
T Consensus 95 Ll~~GadiN~~d~~G~TpLh~-a~~~~~~-~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~-~~~~vv~~Ll~~g 171 (489)
T PHA02798 95 LIENGADINKKNSDGETPLYC-LLSNGYI-NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHH-IDIEIIKLLLEKG 171 (489)
T ss_pred HHHCCCCCCCCCCCcCcHHHH-HHHcCCc-ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCc-chHHHHHHHHHhC
Confidence 67777665533 2333333 3333322 23445555666666655432 12334444444440 1112233334555
Q ss_pred CCCC
Q 047221 432 KSSS 435 (509)
Q Consensus 432 ~~p~ 435 (509)
..++
T Consensus 172 adin 175 (489)
T PHA02798 172 VDIN 175 (489)
T ss_pred CCcc
Confidence 5544
No 467
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=26.08 E-value=7.6e+02 Score=25.65 Aligned_cols=196 Identities=14% Similarity=0.075 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCC--CChHHHHHHHHHHHhc
Q 047221 267 SGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCE--PITLTYNYVLGVLCKN 344 (509)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~li~~~~~~ 344 (509)
..+.-.+..|+..|...+++.+.++..-....|-.++..+...|....|...+-+-.+.+-+ -...-.-.+...+...
T Consensus 304 ~~~~r~v~~l~~a~~~~e~i~~~~~ea~~~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el~~~~ 383 (587)
T COG4715 304 VVVDREVPALASAGLQHEAIRLCEREAEGPGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAELKEEE 383 (587)
T ss_pred HHHHHhhhhhccchhhHHHHHHHHHHhcCcccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHhh
Confidence 34567788889999999999988888666677888999999999888888776554443311 1233346777888888
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHHcCChHHHHHHHHH------------HHHC-C-CCCC-HHH----
Q 047221 345 GQDADACELLEEMLGRNCHPDAITYEIFI--VYSCRVGKFDVAFNFFNQ------------MVKR-G-LQPR-LAT---- 403 (509)
Q Consensus 345 g~~~~a~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~------------m~~~-g-~~p~-~~~---- 403 (509)
|++-.|.++-...... .|+...|--|= ..+...|+.+....+... |... | ..|+ ..+
T Consensus 384 g~~~~a~~Laq~~F~r--~p~~~sy~~lw~~~~~~gi~~~e~~~a~~~~~~~~~p~~~~~~~l~~~g~~~p~d~~~li~~ 461 (587)
T COG4715 384 GRLGFAAELAQEAFFR--TPNGRSYLGLWLAAVYAGIGREEREAALAYLEVGESPFAIWPGALPLTGLLWPADRRTLITR 461 (587)
T ss_pred cchHHHHHHHHHHccC--CCCccchhhHHHHHHHhhhchHHHHHHHHHHHhccCchhhhhhhhhhcccCCcchhhhHhhh
Confidence 9998888887766655 55655555443 233344444433333222 1111 1 1222 111
Q ss_pred -HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---hCCChHHHHHHHHHHHH
Q 047221 404 -HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHD---KNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 404 -~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~ 464 (509)
-..++.++........+.+.+.+....++.--..+++++++--. .....+-|+.++.+..+
T Consensus 462 ~~~~~~~~aiq~~~~~~l~ewl~e~a~~~~s~~~~~~~i~~n~i~~A~~~~~peia~~~~~r~Ae 526 (587)
T COG4715 462 LLSLLIEGAIQEKADLELAEWLAELAKEGVSALRYALHIVENKIVNAVPEKYPEIALLIWKRVAE 526 (587)
T ss_pred hHHHHHHHHHHhhchHHHHHHHHHHHhhhHHHhhhHHhHHHHHHHhhhhccCchHHHHHHHHHHH
Confidence 34455666666666666666666665555444444444444221 22335666666665543
No 468
>PHA02798 ankyrin-like protein; Provisional
Probab=26.08 E-value=6.2e+02 Score=25.83 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHcCCCCChH---HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCChHHHHH
Q 047221 313 KGPRDLLVEMRQVGCEPITL---TYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAIT--YEIFIVYSCRVGKFDVAFN 387 (509)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~ 387 (509)
....++.+.+.+.|..+|.. -.+.+.. .+..|.. .-.++.+.+.+.|..++... -.+.+..+++.|. ..-.+
T Consensus 86 ~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~-a~~~~~~-~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~-~~~~~ 162 (489)
T PHA02798 86 KHMLDIVKILIENGADINKKNSDGETPLYC-LLSNGYI-NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNH-HIDIE 162 (489)
T ss_pred HhHHHHHHHHHHCCCCCCCCCCCcCcHHHH-HHHcCCc-ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCC-cchHH
Confidence 34577888888888776643 2344443 3333332 23456677777887765432 2233444555554 12234
Q ss_pred HHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 047221 388 FFNQMVKRGLQPRLAT---HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN 436 (509)
Q Consensus 388 ~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 436 (509)
+.+.+.+.|..++... ....+..+.+.+--..-.++++.+.+.|..++.
T Consensus 163 vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~ 214 (489)
T PHA02798 163 IIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINK 214 (489)
T ss_pred HHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCccc
Confidence 5556667787776432 112344444332111123455666677766554
No 469
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.04 E-value=1.2e+02 Score=22.19 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=17.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 477 VLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 477 ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
+++.+.++.-.++|+++++-|.+.|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3455666677777777777777665
No 470
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=26.00 E-value=1.8e+02 Score=20.68 Aligned_cols=33 Identities=18% Similarity=0.206 Sum_probs=18.0
Q ss_pred cCCccHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 047221 309 RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVL 341 (509)
Q Consensus 309 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 341 (509)
.|+.+++.+++++....|..|.......+.-+.
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m 46 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAM 46 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 456666666666666666555555444444443
No 471
>PRK05414 urocanate hydratase; Provisional
Probab=25.57 E-value=5.6e+02 Score=26.25 Aligned_cols=70 Identities=14% Similarity=0.002 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcC-CH
Q 047221 208 LDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSG----VRALIEMFSVLG-LY 282 (509)
Q Consensus 208 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~----~~~li~~~~~~g-~~ 282 (509)
..++++|++..++.++.+-..+. +-...+.++++++.+.|+.||..+ ....++.|+=.| .+
T Consensus 216 ~~~Ldeal~~~~~a~~~~~~~SI--------------g~~GNaadv~~~l~~~~i~pDlvtDQTSaHdp~~GY~P~G~t~ 281 (556)
T PRK05414 216 ADDLDEALALAEEAKAAGEPLSI--------------GLLGNAADVLPELVRRGIRPDLVTDQTSAHDPLNGYLPVGWTL 281 (556)
T ss_pred cCCHHHHHHHHHHHHHcCCceEE--------------EEeccHHHHHHHHHHcCCCCCccCcCccccCcccccCCCCCCH
Confidence 45788888888888776632221 125567888999999999888765 233445777777 67
Q ss_pred HHHHHHHHH
Q 047221 283 EMAKYVIKK 291 (509)
Q Consensus 283 ~~A~~~~~~ 291 (509)
+++.++.++
T Consensus 282 ee~~~lr~~ 290 (556)
T PRK05414 282 EEAAELRAE 290 (556)
T ss_pred HHHHHHHHh
Confidence 777766543
No 472
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.56 E-value=8.9e+02 Score=26.32 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhhC
Q 047221 196 DICSLVIDNCGRLDDYETMRQLLNDFNVY 224 (509)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 224 (509)
..+...|..+.-.|++++|-.+.-.|...
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn 421 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGN 421 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcc
Confidence 36777788888888888887777777543
No 473
>PRK09462 fur ferric uptake regulator; Provisional
Probab=25.44 E-value=3.9e+02 Score=22.05 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047221 382 FDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415 (509)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 415 (509)
.-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 33 h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 33 HVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3344444444444443333333333334444433
No 474
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.42 E-value=6.8e+02 Score=24.92 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCCC------------HHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKTERK------------VSYYNILIKEMCRRCDFKGPRDLLVEMR 323 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (509)
.-.|++.++-.|++..|.++++.++.+ +.++--+.-+|.-.+++.+|.++|....
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999999999999887432 3455566667778888888888887655
No 475
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=25.05 E-value=2.1e+02 Score=22.48 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 047221 301 ILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG 345 (509)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 345 (509)
.++..+...+..-.|.++++.|.+.|...+..|.-.-|..+.+.|
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 344555555555566666666666655555555444444444444
No 476
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.87 E-value=2.8e+02 Score=20.28 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=15.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC
Q 047221 372 FIVYSCRVGKFDVAFNFFNQMVKRG 396 (509)
Q Consensus 372 li~~~~~~g~~~~a~~~~~~m~~~g 396 (509)
+++-+.++.-.++|+++++.|.++|
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 3445556666666666666666665
No 477
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=24.86 E-value=2.8e+02 Score=27.47 Aligned_cols=131 Identities=12% Similarity=-0.017 Sum_probs=77.5
Q ss_pred HHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHH--H--HHHhcCCccHHHHHHHHHHHc
Q 047221 253 VVEVLNQVGGSCLVSG---VRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILI--K--EMCRRCDFKGPRDLLVEMRQV 325 (509)
Q Consensus 253 ~~~~m~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li--~--~~~~~g~~~~A~~~~~~m~~~ 325 (509)
+++.+.+.|+.|+..+ -.+++.++.-.+..++..+++.....+...+...- . ++...+..+.....++.+.+.
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~l~~ 180 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDGIDLSAFNRLRGKKSLGYSGYGWLGTLGRRIQRLLRE 180 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccchhhhhhhhhccccccccccccccchHHHHHHHHHcC
Confidence 6667778888888764 35677777666777777777765322222111100 0 111112223344555666667
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH----------------hCCCCCCHHHHHHHHHHHHHcCChH
Q 047221 326 GCEPITLTYNYVLGVLCKNGQDADACELLEEML----------------GRNCHPDAITYEIFIVYSCRVGKFD 383 (509)
Q Consensus 326 g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~----------------~~g~~p~~~~~~~li~~~~~~g~~~ 383 (509)
|.-.|...+...+..+...-.+++|.+--.+.. ..--.||+..|.++...|+--+-+.
T Consensus 181 G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~~ 254 (391)
T cd07229 181 GYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAALY 254 (391)
T ss_pred CCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCccccC
Confidence 777777777777777665556677664322211 1123689999999988887666554
No 478
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.68 E-value=7e+02 Score=24.79 Aligned_cols=63 Identities=8% Similarity=-0.014 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047221 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEP---ITLTYNYVLGVLCKNGQDADACELLEEMLGR 360 (509)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 360 (509)
..+.-+...|...|+++.|++.|.+.+.- +.- -...|-.+|..-.-.|+|.....+..+..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 45677778888888888888888875532 122 2333445555556677777777777766554
No 479
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=24.64 E-value=9.4e+02 Score=26.25 Aligned_cols=148 Identities=15% Similarity=0.024 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHH--------cCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---------------------
Q 047221 313 KGPRDLLVEMRQ--------VGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCH--------------------- 363 (509)
Q Consensus 313 ~~A~~~~~~m~~--------~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------------------- 363 (509)
++...+++.... .++..+..+...++... .|+..+++.+++.+......
T Consensus 171 edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l~~~~ 248 (725)
T PRK13341 171 EDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLIDITLAIAEESIQQRA 248 (725)
T ss_pred HHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHHHHhh
Q ss_pred --------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhC
Q 047221 364 --------PDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY-----RYEDAYKYVVLSADK 430 (509)
Q Consensus 364 --------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~ 430 (509)
+...+..++++.+ +.++++.|+..+..|.+.|..|....-..++.+.-.-| ....|...+.-...-
T Consensus 249 ~~ydk~gd~hyd~Isa~~ksi-rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~ 327 (725)
T PRK13341 249 VLYDKEGDAHFDTISAFIKSL-RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERV 327 (725)
T ss_pred hhcccCCCCCHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHh
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 431 YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 431 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
|..--........-.++..-+...+ ..+.+..+
T Consensus 328 g~pE~~~~laq~~~~la~apKSns~-~a~~~a~~ 360 (725)
T PRK13341 328 GLPEGLYPLAQAALYLATAPKSNSV-LGFFDALK 360 (725)
T ss_pred CCcchhhHHHHHHHHHHcCCCccHH-HHHHHHHH
No 480
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.39 E-value=1.1e+03 Score=27.07 Aligned_cols=122 Identities=17% Similarity=0.178 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HH
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGRNCH---PD-AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRL----AT 403 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~ 403 (509)
.-|-.++..+-+.+..+.+.++-....+. .+ |. ..+++++.+-....|.+-+|...+-. .||. ..
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdc 1056 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHH
Confidence 44677788888888888888876666554 22 22 23577777777788888877765543 2333 34
Q ss_pred HHHHHHHHHHcCCHHHH------------HH-HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 047221 404 HAAFIKGYFIFYRYEDA------------YK-YVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLS 460 (509)
Q Consensus 404 ~~~li~~~~~~g~~~~A------------~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 460 (509)
...++-..+.+|.++.- .. +++............-|+.|-.-+...+++.+|-.++-
T Consensus 1057 LRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 56677777777776543 22 22222222211222346666666677888887765543
No 481
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=24.18 E-value=1.3e+02 Score=30.46 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 047221 436 NMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHT 483 (509)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 483 (509)
..+||+ .-.|...|++..|.+.|.+.... +..++..|..+..+|.-
T Consensus 336 eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 336 EILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 346764 44567889999999999888765 66788899999998864
No 482
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.96 E-value=6.1e+02 Score=23.84 Aligned_cols=116 Identities=11% Similarity=0.013 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047221 335 NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF 414 (509)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 414 (509)
-.++..+.+.+++.+..+.+..+. ....-...|......|++..|++++.+..+.- . +..-|+++=+. .
T Consensus 102 L~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L---~ 170 (291)
T PF10475_consen 102 LEILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL---S 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---h
Confidence 345556666666666666666654 33445566777788889999888888766431 0 00111111111 1
Q ss_pred CCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 047221 415 YRYEDAYKYVVLSADKY-----KSSSNMLYSLLASLHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 415 g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 461 (509)
.++++-....+++.+.. ..-|...|..+..||.-.|+...+.+-+..
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 12333333333322211 135677788888888888766555444443
No 483
>PHA02878 ankyrin repeat protein; Provisional
Probab=23.95 E-value=7.7e+02 Score=25.01 Aligned_cols=271 Identities=10% Similarity=0.055 Sum_probs=125.6
Q ss_pred HHHhccCCHHHHHHHHHHhhhCCCccCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 047221 203 DNCGRLDDYETMRQLLNDFNVYQVCLNE---KAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVL 279 (509)
Q Consensus 203 ~~~~~~g~~~~A~~l~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (509)
...++.|+.+-+..++ +.|..++. ...+.+.- ++..+..+.+..+++....... .... ..+...+..
T Consensus 42 h~A~~~g~~e~vk~Ll----~~gadvn~~d~~g~TpLh~--A~~~g~~~~v~~Ll~~~~~~~~---~~~~-~~l~~a~~~ 111 (477)
T PHA02878 42 HQAVEARNLDVVKSLL----TRGHNVNQPDHRDLTPLHI--ICKEPNKLGMKEMIRSINKCSV---FYTL-VAIKDAFNN 111 (477)
T ss_pred HHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHH--HHHCccHhHHHHHHHHHhcccc---ccch-hhHHHHHHc
Confidence 3446677776665555 45655543 33334433 2334446655555554332221 1122 233444556
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHH--HHHHHHHHHcCCCCChHHH---HHHHHHHHhcCChHHHHHHH
Q 047221 280 GLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGP--RDLLVEMRQVGCEPITLTY---NYVLGVLCKNGQDADACELL 354 (509)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A--~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~a~~~~ 354 (509)
|..+-+..++..-..+..... +.. ... ...... .++.+.+.+.|..++...- .+.+...+..|+.+ +.
T Consensus 112 ~~~ei~~~Ll~~~~~~~~~~~-~~~-~~~-~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~----iv 184 (477)
T PHA02878 112 RNVEIFKIILTNRYKNIQTID-LVY-IDK-KSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQR----LT 184 (477)
T ss_pred CCHHHHHHHHhCcccCcccCc-HHH-Hhh-ccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHH----HH
Confidence 777777777654211100000 000 011 111112 2366777777766654422 24455556777765 44
Q ss_pred HHHHhCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 047221 355 EEMLGRNCHPDAI---TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLA---THAAFIKGYFIFYRYEDAYKYVVLSA 428 (509)
Q Consensus 355 ~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 428 (509)
+.+.+.|..++.. -.+. +...++.|+.+ +++.+.+.|..++.. -.+.|..+....++.+-+.- +.
T Consensus 185 ~~Ll~~gad~n~~d~~g~tp-Lh~A~~~~~~~----iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~----Ll 255 (477)
T PHA02878 185 ELLLSYGANVNIPDKTNNSP-LHHAVKHYNKP----IVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKL----LL 255 (477)
T ss_pred HHHHHCCCCCCCcCCCCCCH-HHHHHHhCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHH----HH
Confidence 4455566655533 2333 34445566654 445555666655532 23445544444455544433 34
Q ss_pred hCCCCCCHHH----HHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHH---HHHHHHHHHhcCCHHHHHHHHHHHH-hC
Q 047221 429 DKYKSSSNML----YSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSV---YRRVLKHLHTSHQEHMAKCLSSRYS-SL 500 (509)
Q Consensus 429 ~~~~~p~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~m~-~~ 500 (509)
+.|..++... ++.|..+ .+.. ++++.+.+.|..++... .+.+..|+......+.+..+...+. ..
T Consensus 256 ~~gadvn~~~~~~g~TpLh~A---~~~~----~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~~~~~ 328 (477)
T PHA02878 256 EHGVDVNAKSYILGLTALHSS---IKSE----RKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISNICLLK 328 (477)
T ss_pred HcCCCCCccCCCCCCCHHHHH---ccCH----HHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHHHHHH
Confidence 5666555432 3344444 2222 34555666676655431 2333333333233344444444433 33
Q ss_pred CCCCCc
Q 047221 501 SLGSSV 506 (509)
Q Consensus 501 ~~~~~~ 506 (509)
+..|+.
T Consensus 329 ~~~~~~ 334 (477)
T PHA02878 329 RIKPDI 334 (477)
T ss_pred hccCcc
Confidence 445543
No 484
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=23.64 E-value=2.8e+02 Score=22.38 Aligned_cols=55 Identities=18% Similarity=0.022 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHH
Q 047221 195 SDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVE 255 (509)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 255 (509)
+..|-..++.+ ++..++|..|.++|+.-....|-.--..++...|++.+|.++++
T Consensus 69 LkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 69 LKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
No 485
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=23.50 E-value=3.9e+02 Score=24.35 Aligned_cols=18 Identities=11% Similarity=-0.095 Sum_probs=8.9
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 047221 481 LHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 481 ~~~~g~~~~a~~~~~~m~ 498 (509)
+.+.++.+.+..+.+-+.
T Consensus 202 ~l~~~~~~~~~~iv~WL~ 219 (246)
T PF07678_consen 202 LLKRGDLEEASPIVRWLI 219 (246)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHH
Confidence 333455555555555444
No 486
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=23.43 E-value=1.7e+02 Score=22.79 Aligned_cols=36 Identities=8% Similarity=-0.104 Sum_probs=17.5
Q ss_pred CChHHHHHHHHHHH--HCCCCcCHHHHHHHHHHHHhcC
Q 047221 450 NNPVMAKNVLSEMM--KNGLRPNVSVYRRVLKHLHTSH 485 (509)
Q Consensus 450 g~~~~a~~~~~~m~--~~g~~p~~~t~~~ll~~~~~~g 485 (509)
|.+++....+=++. ..+...|...+...+.+....|
T Consensus 61 Ge~~~i~~alLkq~~~~~~~~~d~e~l~~~~~lHl~rG 98 (105)
T TIGR03184 61 GEYGDIYLALLKQRCVADGPELDDESLAKALNLHVHRG 98 (105)
T ss_pred CchHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 44444443333322 3455566666666665555443
No 487
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=23.13 E-value=2.6e+02 Score=19.21 Aligned_cols=13 Identities=31% Similarity=0.302 Sum_probs=4.5
Q ss_pred CCChHHHHHHHHH
Q 047221 449 NNNPVMAKNVLSE 461 (509)
Q Consensus 449 ~g~~~~a~~~~~~ 461 (509)
.|++-+|-+++++
T Consensus 12 ~g~f~EaHEvlE~ 24 (62)
T PF03745_consen 12 AGDFFEAHEVLEE 24 (62)
T ss_dssp TT-HHHHHHHHHH
T ss_pred CCCHHHhHHHHHH
Confidence 3333333333333
No 488
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=23.06 E-value=1e+03 Score=26.17 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=38.5
Q ss_pred HcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-------------CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 047221 324 QVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRN-------------CHPDAITYEIFIVYSCRVGKFDVAFNFFN 390 (509)
Q Consensus 324 ~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 390 (509)
.+|+..+......+.. ...|++.+|+.++++....+ -..|...+..++.++ ..++..+++.+++
T Consensus 193 ~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~aL-~~~d~~~~l~~~~ 269 (830)
T PRK07003 193 EERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDAL-AAGDGPEILAVAD 269 (830)
T ss_pred HcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence 3455555555444433 23566666666665543321 012333344444443 3477777777777
Q ss_pred HHHHCCCCC
Q 047221 391 QMVKRGLQP 399 (509)
Q Consensus 391 ~m~~~g~~p 399 (509)
++...|+.+
T Consensus 270 ~l~~~g~~~ 278 (830)
T PRK07003 270 EMALRSLSF 278 (830)
T ss_pred HHHHhCCCH
Confidence 777766544
No 489
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=22.20 E-value=3.7e+02 Score=20.70 Aligned_cols=60 Identities=8% Similarity=-0.112 Sum_probs=30.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCC
Q 047221 370 EIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY--RYEDAYKYVVLSADKY 431 (509)
Q Consensus 370 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~ 431 (509)
..++..|...+++++|.+-+.++..... .......+|..+...+ .-+.+..++..+.+.+
T Consensus 6 ~~~l~ey~~~~D~~ea~~~l~~L~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 6 FLIIEEYLSSGDTDEAVHCLLELKLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhCCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 3456667777778777777777643221 2223333444443332 2233445555555443
No 490
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=22.19 E-value=4.7e+02 Score=25.93 Aligned_cols=36 Identities=11% Similarity=0.128 Sum_probs=19.0
Q ss_pred HHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 047221 457 NVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKC 492 (509)
Q Consensus 457 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 492 (509)
..++...+.|.-.|...+...++.+...-.++||.+
T Consensus 172 ~~l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~ 207 (391)
T cd07229 172 RRIQRLLREGYFLDVKVLEEFVRANLGDLTFEEAYA 207 (391)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHH
Confidence 334444445555566666665555554445555553
No 491
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=22.15 E-value=8.8e+02 Score=25.02 Aligned_cols=163 Identities=10% Similarity=0.000 Sum_probs=93.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHH
Q 047221 263 SCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLG 339 (509)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 339 (509)
..|....-+++..++....+.-.+.+..+| ..+-..|-.++.+|..+ .-+.-..+++++.+.. .|.+...--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHH
Confidence 344445567777777777777776666665 45666777777777777 4456667777776653 23333333333
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHH
Q 047221 340 VLCKNGQDADACELLEEMLGRNCHP--D---AITYEIFIVYSCRVGKFDVAFNFFNQMVKR-GLQPRLATHAAFIKGYFI 413 (509)
Q Consensus 340 ~~~~~g~~~~a~~~~~~m~~~g~~p--~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~ 413 (509)
.+...++.+.+...|.....+-++. + -..|.-++..- ..+.+....+...+.+. |..--.+.+--+-.-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3334467777777777665542210 1 12344444321 24566666666665543 333334455555566777
Q ss_pred cCCHHHHHHHHHHHHhC
Q 047221 414 FYRYEDAYKYVVLSADK 430 (509)
Q Consensus 414 ~g~~~~A~~~~~~m~~~ 430 (509)
..++++|.+++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 77777777777755543
No 492
>COG5210 GTPase-activating protein [General function prediction only]
Probab=21.99 E-value=7.8e+02 Score=25.32 Aligned_cols=117 Identities=7% Similarity=-0.053 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHC
Q 047221 387 NFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKN-NNPVMAKNVLSEMMKN 465 (509)
Q Consensus 387 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~ 465 (509)
+++..|.+.|+.....++..++..+.+...++.|.++++.+--.|..-....+.+++...... ...+.=..+.......
T Consensus 363 ~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 442 (496)
T COG5210 363 ELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLDLLLKQL 442 (496)
T ss_pred HHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhccCchhHHHHHHHhh
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047221 466 GLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSS 505 (509)
Q Consensus 466 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 505 (509)
-..+....+ .-..-...+-..+.....+.+.+.++.|+
T Consensus 443 ~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~i~p~ 480 (496)
T COG5210 443 FLHSGKEAW--SSILKFRHGTDRDILLFIEDLLKKDITPT 480 (496)
T ss_pred hhhhhhhhh--hhhHHhhhhhhhhHHHHHHhhhhcccCch
No 493
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=21.95 E-value=4.1e+02 Score=24.22 Aligned_cols=33 Identities=9% Similarity=0.029 Sum_probs=20.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHC-----CCCcCHHHHHH
Q 047221 444 SLHDKNNNPVMAKNVLSEMMKN-----GLRPNVSVYRR 476 (509)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~t~~~ 476 (509)
-++.+.++.+.+..+.+-+.++ |+.-+..|..+
T Consensus 200 La~l~~~~~~~~~~iv~WL~~qr~~~Ggf~STQdTvva 237 (246)
T PF07678_consen 200 LALLKRGDLEEASPIVRWLISQRNSGGGFGSTQDTVVA 237 (246)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHCTTTTSSTSSHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHhcCCCCccCcHHHHHHH
Confidence 3444558888888888877764 34444444433
No 494
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=21.56 E-value=6.5e+02 Score=23.26 Aligned_cols=64 Identities=16% Similarity=-0.038 Sum_probs=39.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCC-CCc-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMKNG-LRP-----NVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSS 505 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~~g-~~p-----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 505 (509)
|+..|.+.|+++.|-.++--+...+ ... +...-..++......|+|+.+.++.+=|+..+...+
T Consensus 185 Lf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld~~~~ 254 (258)
T PF07064_consen 185 LFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALDPEGN 254 (258)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcccC
Confidence 4455555666665555554443321 222 334455667777888999999999888887665543
No 495
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=21.53 E-value=6.6e+02 Score=23.30 Aligned_cols=148 Identities=10% Similarity=0.005 Sum_probs=90.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHc--CCCHHHHHHHHHHHHh----cCCcc
Q 047221 244 ALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVL----GLYEMAKYVIKKT--ERKVSYYNILIKEMCR----RCDFK 313 (509)
Q Consensus 244 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m--~~~~~~~~~li~~~~~----~g~~~ 313 (509)
......+...+......+.. .....+..+|... .+...|..+|+.. ..+......|...|.. ..+..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred cccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHH
Confidence 44477788887777764322 4455555665543 3577788888876 2334455556666655 34778
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCh
Q 047221 314 GPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG-------QDADACELLEEMLGRNCHPDAITYEIFIVYSCR----VGKF 382 (509)
Q Consensus 314 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~ 382 (509)
+|...|++.-+.|..+-..+...+-..|..-+ +...|...+.+.-..| +......+-..|.. ..+.
T Consensus 131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCH
Confidence 88888888888885443333444444444431 2236888888887776 33444444444432 3467
Q ss_pred HHHHHHHHHHHHCCC
Q 047221 383 DVAFNFFNQMVKRGL 397 (509)
Q Consensus 383 ~~a~~~~~~m~~~g~ 397 (509)
.+|...|+...+.|.
T Consensus 208 ~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 208 KKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHHHHCCC
Confidence 788888888877763
No 496
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=21.39 E-value=3e+02 Score=21.64 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=10.2
Q ss_pred HHHhcCCccHHHHHHHHHHHcC
Q 047221 305 EMCRRCDFKGPRDLLVEMRQVG 326 (509)
Q Consensus 305 ~~~~~g~~~~A~~~~~~m~~~g 326 (509)
.+.++...++|+++++-|.+.|
T Consensus 70 ~lrRC~T~EEALEVInylek~G 91 (128)
T PF09868_consen 70 YLRRCKTDEEALEVINYLEKRG 91 (128)
T ss_pred HHHHhCcHHHHHHHHHHHHHhC
Confidence 3334444444555555555444
No 497
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=21.24 E-value=3.9e+02 Score=20.58 Aligned_cols=62 Identities=11% Similarity=0.057 Sum_probs=36.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHcC
Q 047221 198 CSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKA-LTKKGIWRVVEVLNQVG 261 (509)
Q Consensus 198 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~~a~~~~~~m~~~g 261 (509)
...++.-|...+++++|.+-+.++.... -.......++..++.+. ...+....++..+.+.+
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 3456777788899999999988875332 23334445555455442 23444455555555444
No 498
>PHA02989 ankyrin repeat protein; Provisional
Probab=21.11 E-value=6.3e+02 Score=25.85 Aligned_cols=193 Identities=9% Similarity=0.088 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHH-cCCCHHH-HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHH-HHHHHHHHhcCCh--HHHHHHH
Q 047221 280 GLYEMAKYVIKK-TERKVSY-YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY-NYVLGVLCKNGQD--ADACELL 354 (509)
Q Consensus 280 g~~~~A~~~~~~-m~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~~~g~~--~~a~~~~ 354 (509)
.+.+.+..+++. ...|... -...+..++..+.. -.++.+.+.+.|..+|...+ .+-+..+.+.+.. ....++.
T Consensus 14 ~~~~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~--~~~iv~~Ll~~GAdvn~~~~~~tpL~~a~~~~~~~~~~~~~iv 91 (494)
T PHA02989 14 VDKNALEFLLRTGFDVNEEYRGNSILLLYLKRKDV--KIKIVKLLIDNGADVNYKGYIETPLCAVLRNREITSNKIKKIV 91 (494)
T ss_pred CcHHHHHHHHHcCCCcccccCCCCHHHHHHhcCCC--ChHHHHHHHHcCCCccCCCCCCCcHHHHHhccCcchhhHHHHH
Confidence 456666666544 2333221 11223333333321 12344455566655553221 1222233333332 2345566
Q ss_pred HHHHhCCCCCCHHH---HHHHHHHHHH--cCChHHHHHHHHHHHHCCCCC-CHH---HHHHHHHHHHH-cCCHHHHHHHH
Q 047221 355 EEMLGRNCHPDAIT---YEIFIVYSCR--VGKFDVAFNFFNQMVKRGLQP-RLA---THAAFIKGYFI-FYRYEDAYKYV 424 (509)
Q Consensus 355 ~~m~~~g~~p~~~~---~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p-~~~---~~~~li~~~~~-~g~~~~A~~~~ 424 (509)
+.+.+.|..++... .+.|..+... .|. .++.+.+.+.|..+ +.. -++.|..+... .++.+- .
T Consensus 92 ~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~----~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~i----v 163 (494)
T PHA02989 92 KLLLKFGADINLKTFNGVSPIVCFIYNSNINN----CDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDV----I 163 (494)
T ss_pred HHHHHCCCCCCCCCCCCCcHHHHHHHhcccCc----HHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHH----H
Confidence 67777776655432 3333322211 122 34555566667666 322 23333322222 234333 3
Q ss_pred HHHHhCCCCCCHH----HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHH--HHHHHHHHHh
Q 047221 425 VLSADKYKSSSNM----LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSV--YRRVLKHLHT 483 (509)
Q Consensus 425 ~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~ 483 (509)
+.+.+.|..++.. -.+. +..+.+.+--..-.++.+-+.+.|..++... ..+++..+..
T Consensus 164 ~~Ll~~Gadi~~~~~~~g~tp-L~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~ 227 (494)
T PHA02989 164 KILLSFGVNLFEKTSLYGLTP-MNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLD 227 (494)
T ss_pred HHHHHcCCCccccccccCCCh-HHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHH
Confidence 3334566655431 1112 2222222211122455555666676655443 2344444433
No 499
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=20.93 E-value=1.6e+02 Score=15.97 Aligned_cols=11 Identities=9% Similarity=0.314 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 047221 383 DVAFNFFNQMV 393 (509)
Q Consensus 383 ~~a~~~~~~m~ 393 (509)
+.|..+|+++.
T Consensus 4 ~~~r~i~e~~l 14 (33)
T smart00386 4 ERARKIYERAL 14 (33)
T ss_pred HHHHHHHHHHH
Confidence 33444444433
No 500
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=20.42 E-value=2.5e+02 Score=22.10 Aligned_cols=89 Identities=11% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 047221 383 DVAFNFFNQMVKR-GLQP-RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLS 460 (509)
Q Consensus 383 ~~a~~~~~~m~~~-g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 460 (509)
+++.+.+.++... |+.| |+..--++.........+. -.+.-.+.|+..+-.||. |++++....+=
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~----~~~~~~d~g~e~~~~t~~---------Ge~~~~~~~ll 72 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPS----DEDIKDDSGLELNWKTFT---------GEYDDIYEALL 72 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCC----CCccCCCCCeEEeeeeec---------CchHHHHHHHH
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcC
Q 047221 461 EMMKNGLRPNVSVYRRVLKHLHTSH 485 (509)
Q Consensus 461 ~m~~~g~~p~~~t~~~ll~~~~~~g 485 (509)
++.. |...|...+...+++....|
T Consensus 73 ~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 73 KQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHh-CCCCCHHHHHHHHHHHHHHh
Done!