Query 047221
Match_columns 509
No_of_seqs 566 out of 2867
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 15:35:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047221.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047221hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 1.3E-33 4.6E-38 285.5 24.3 189 296-484 26-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.8E-32 9.6E-37 275.9 24.7 215 213-449 8-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.1E-29 3.7E-34 265.5 35.3 335 156-501 146-580 (597)
4 2xpi_A Anaphase-promoting comp 100.0 6.1E-28 2.1E-32 252.2 40.6 315 159-481 199-594 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2E-21 6.9E-26 191.6 42.5 329 162-502 35-370 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.9E-20 1E-24 183.3 40.9 318 156-485 63-387 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 8.8E-20 3E-24 183.3 37.5 293 161-464 27-357 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 1.1E-18 3.9E-23 175.2 38.1 302 193-503 24-361 (450)
9 2gw1_A Mitochondrial precursor 99.8 5.2E-18 1.8E-22 173.2 34.2 339 158-503 37-481 (514)
10 3ieg_A DNAJ homolog subfamily 99.8 9.1E-17 3.1E-21 155.6 38.1 301 195-503 3-338 (359)
11 3spa_A Mtrpol, DNA-directed RN 99.8 1.8E-20 6.2E-25 195.0 12.2 119 296-414 127-249 (1134)
12 3spa_A Mtrpol, DNA-directed RN 99.8 2.9E-20 9.8E-25 193.5 10.8 136 330-470 126-265 (1134)
13 2gw1_A Mitochondrial precursor 99.8 3.9E-17 1.3E-21 166.6 32.0 329 163-502 9-446 (514)
14 3fp2_A TPR repeat-containing p 99.8 5.8E-16 2E-20 159.1 36.2 336 158-503 57-494 (537)
15 3hym_B Cell division cycle pro 99.8 3.5E-16 1.2E-20 149.8 31.4 285 196-488 23-322 (330)
16 3ieg_A DNAJ homolog subfamily 99.8 3.8E-15 1.3E-19 144.1 38.3 309 161-481 4-350 (359)
17 3hym_B Cell division cycle pro 99.8 4.3E-16 1.5E-20 149.1 29.4 271 227-503 19-302 (330)
18 1fch_A Peroxisomal targeting s 99.7 2.8E-16 9.6E-21 153.2 25.3 285 207-496 37-355 (368)
19 1b89_A Protein (clathrin heavy 99.7 4.7E-17 1.6E-21 157.6 17.0 277 175-493 20-304 (449)
20 4eqf_A PEX5-related protein; a 99.7 6.9E-16 2.4E-20 150.5 25.0 245 247-496 81-352 (365)
21 3fp2_A TPR repeat-containing p 99.7 8.6E-15 2.9E-19 150.3 30.6 324 161-501 26-408 (537)
22 1fch_A Peroxisomal targeting s 99.7 5.1E-15 1.7E-19 144.2 26.6 282 176-462 43-356 (368)
23 3cv0_A Peroxisome targeting si 99.7 3.2E-15 1.1E-19 142.8 24.5 264 196-496 22-311 (327)
24 3mkr_A Coatomer subunit epsilo 99.7 4.8E-15 1.7E-19 139.6 25.1 269 202-492 6-286 (291)
25 3cv0_A Peroxisome targeting si 99.7 6.9E-15 2.4E-19 140.5 26.4 232 267-503 22-272 (327)
26 4eqf_A PEX5-related protein; a 99.7 2.2E-15 7.4E-20 146.9 23.2 263 194-461 64-352 (365)
27 3mkr_A Coatomer subunit epsilo 99.7 4E-14 1.4E-18 133.3 27.1 243 176-430 17-264 (291)
28 1b89_A Protein (clathrin heavy 99.6 4.9E-16 1.7E-20 150.5 9.8 254 197-494 8-266 (449)
29 2xm6_A Protein corresponding t 99.6 2.7E-11 9.2E-16 123.0 45.3 318 160-503 75-435 (490)
30 2xm6_A Protein corresponding t 99.6 1.7E-11 5.8E-16 124.5 43.2 283 197-500 77-396 (490)
31 2ooe_A Cleavage stimulation fa 99.6 2.6E-11 8.9E-16 124.4 40.7 182 314-501 256-455 (530)
32 1ouv_A Conserved hypothetical 99.6 5.7E-12 1.9E-16 117.3 31.9 220 267-501 7-252 (273)
33 2pl2_A Hypothetical conserved 99.6 3.1E-13 1E-17 121.5 21.4 198 294-497 3-211 (217)
34 2vq2_A PILW, putative fimbrial 99.6 1.7E-12 5.9E-17 116.5 26.3 198 265-464 7-210 (225)
35 2ho1_A Type 4 fimbrial biogene 99.6 1.9E-12 6.4E-17 118.8 26.9 195 267-464 38-237 (252)
36 2ho1_A Type 4 fimbrial biogene 99.6 1.8E-12 6.3E-17 118.8 26.5 204 296-503 37-241 (252)
37 3uq3_A Heat shock protein STI1 99.5 3.4E-12 1.2E-16 117.1 26.5 204 247-464 21-235 (258)
38 2pl2_A Hypothetical conserved 99.5 8.2E-13 2.8E-17 118.6 21.6 196 263-463 2-212 (217)
39 2vq2_A PILW, putative fimbrial 99.5 3.5E-12 1.2E-16 114.4 25.6 206 295-503 7-214 (225)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.4E-13 8.3E-18 126.3 18.3 241 245-494 19-269 (275)
41 3uq3_A Heat shock protein STI1 99.5 2.5E-12 8.7E-17 118.0 25.0 223 195-430 5-236 (258)
42 1xi4_A Clathrin heavy chain; a 99.5 4.4E-11 1.5E-15 129.0 37.5 297 156-498 981-1307(1630)
43 4g1t_A Interferon-induced prot 99.5 1.3E-11 4.5E-16 124.4 31.2 341 159-503 50-462 (472)
44 1ouv_A Conserved hypothetical 99.5 7.2E-11 2.5E-15 109.8 32.2 205 247-466 22-252 (273)
45 2ooe_A Cleavage stimulation fa 99.5 7.9E-10 2.7E-14 113.3 42.0 338 157-501 76-493 (530)
46 2q7f_A YRRB protein; TPR, prot 99.5 2.9E-12 9.8E-17 116.6 21.0 198 264-465 21-222 (243)
47 3u4t_A TPR repeat-containing p 99.5 4.5E-12 1.5E-16 117.6 22.2 229 271-502 8-252 (272)
48 1xnf_A Lipoprotein NLPI; TPR, 99.5 9.3E-13 3.2E-17 122.3 17.4 244 206-459 16-269 (275)
49 2q7f_A YRRB protein; TPR, prot 99.5 3.3E-12 1.1E-16 116.2 20.7 202 296-502 23-224 (243)
50 4g1t_A Interferon-induced prot 99.5 1.9E-10 6.6E-15 115.8 34.5 304 195-503 51-404 (472)
51 2h6f_A Protein farnesyltransfe 99.4 1.7E-11 6E-16 119.4 24.2 231 226-462 92-344 (382)
52 2h6f_A Protein farnesyltransfe 99.4 6.6E-11 2.2E-15 115.3 27.6 245 194-447 96-364 (382)
53 1xi4_A Clathrin heavy chain; a 99.4 1.1E-09 3.7E-14 118.5 35.9 295 158-494 951-1273(1630)
54 3u4t_A TPR repeat-containing p 99.4 5.9E-11 2E-15 110.0 23.5 232 197-464 5-249 (272)
55 2ond_A Cleavage stimulation fa 99.4 5.8E-10 2E-14 105.7 30.4 212 248-464 33-269 (308)
56 4a1s_A PINS, partner of inscut 99.4 3E-11 1E-15 119.3 22.0 195 196-393 49-290 (411)
57 3sf4_A G-protein-signaling mod 99.4 2.2E-11 7.5E-16 119.8 20.7 291 195-487 9-363 (406)
58 3ro2_A PINS homolog, G-protein 99.4 1.6E-11 5.4E-16 117.1 19.1 205 297-501 84-333 (338)
59 4a1s_A PINS, partner of inscut 99.4 2.6E-11 8.9E-16 119.8 20.9 252 246-498 63-370 (411)
60 3sf4_A G-protein-signaling mod 99.4 2.6E-11 8.9E-16 119.2 20.1 260 240-499 18-335 (406)
61 3ro2_A PINS homolog, G-protein 99.4 3.2E-11 1.1E-15 114.9 19.8 266 197-465 7-332 (338)
62 3vtx_A MAMA; tetratricopeptide 99.4 2.4E-10 8.3E-15 99.2 22.9 166 295-464 4-169 (184)
63 3nf1_A KLC 1, kinesin light ch 99.3 4.5E-11 1.5E-15 112.9 17.8 237 263-500 24-307 (311)
64 3vtx_A MAMA; tetratricopeptide 99.3 4.6E-10 1.6E-14 97.4 22.7 164 264-430 3-170 (184)
65 3ulq_A Response regulator aspa 99.3 1E-10 3.5E-15 114.6 20.6 291 206-499 23-367 (383)
66 2ond_A Cleavage stimulation fa 99.3 1.7E-09 5.7E-14 102.5 28.2 217 212-431 33-271 (308)
67 4abn_A Tetratricopeptide repea 99.3 8.2E-11 2.8E-15 118.7 20.0 210 247-461 84-317 (474)
68 3ulq_A Response regulator aspa 99.3 7.4E-10 2.5E-14 108.4 24.2 225 237-464 109-367 (383)
69 4abn_A Tetratricopeptide repea 99.3 1.9E-10 6.4E-15 116.1 19.7 193 295-492 101-313 (474)
70 1hz4_A MALT regulatory protein 99.3 6.8E-09 2.3E-13 101.0 29.6 297 197-502 16-351 (373)
71 3nf1_A KLC 1, kinesin light ch 99.3 1.9E-10 6.6E-15 108.5 17.7 233 230-464 27-306 (311)
72 3q15_A PSP28, response regulat 99.2 1.3E-09 4.6E-14 106.4 23.3 299 197-499 12-364 (378)
73 3as5_A MAMA; tetratricopeptide 99.2 1.6E-09 5.5E-14 93.4 21.3 156 269-427 11-170 (186)
74 3as5_A MAMA; tetratricopeptide 99.2 1.6E-09 5.5E-14 93.4 20.2 163 334-500 11-173 (186)
75 3e4b_A ALGK; tetratricopeptide 99.2 2.1E-09 7.2E-14 107.6 22.8 300 176-503 56-390 (452)
76 3e4b_A ALGK; tetratricopeptide 99.2 9.2E-09 3.1E-13 103.0 26.8 299 176-499 92-420 (452)
77 1hz4_A MALT regulatory protein 99.2 2.6E-08 8.8E-13 96.9 28.1 254 176-430 32-322 (373)
78 3q15_A PSP28, response regulat 99.1 3.8E-08 1.3E-12 96.0 26.6 225 236-464 106-364 (378)
79 3edt_B KLC 2, kinesin light ch 99.1 6.6E-10 2.3E-14 103.0 13.5 222 278-500 13-281 (283)
80 4gyw_A UDP-N-acetylglucosamine 99.1 3.8E-09 1.3E-13 111.1 20.1 161 265-428 8-172 (723)
81 4gyw_A UDP-N-acetylglucosamine 99.1 6.2E-09 2.1E-13 109.6 21.1 166 295-464 8-173 (723)
82 3edt_B KLC 2, kinesin light ch 99.1 2.1E-09 7.3E-14 99.5 15.8 201 263-464 40-280 (283)
83 4i17_A Hypothetical protein; T 99.0 4.6E-08 1.6E-12 87.9 21.5 188 265-464 6-208 (228)
84 4i17_A Hypothetical protein; T 99.0 4.5E-08 1.5E-12 87.9 21.0 198 294-503 5-212 (228)
85 1qqe_A Vesicular transport pro 99.0 1.3E-08 4.4E-13 95.5 17.1 195 303-499 44-268 (292)
86 2fo7_A Synthetic consensus TPR 99.0 4.4E-08 1.5E-12 79.2 17.8 130 369-501 4-133 (136)
87 2fo7_A Synthetic consensus TPR 99.0 3.9E-08 1.3E-12 79.5 17.1 124 300-426 5-128 (136)
88 1qqe_A Vesicular transport pro 98.9 4.6E-08 1.6E-12 91.8 17.4 204 246-464 32-268 (292)
89 3mv2_B Coatomer subunit epsilo 98.9 1.1E-07 3.6E-12 88.4 18.2 180 285-472 85-287 (310)
90 4e6h_A MRNA 3'-END-processing 98.9 1.4E-05 4.8E-10 83.2 35.4 155 343-500 355-533 (679)
91 3qky_A Outer membrane assembly 98.8 1E-07 3.6E-12 87.6 16.8 182 264-465 13-224 (261)
92 3mv2_B Coatomer subunit epsilo 98.8 2.1E-07 7.1E-12 86.4 18.5 175 250-431 85-283 (310)
93 3urz_A Uncharacterized protein 98.8 3.3E-07 1.1E-11 81.1 18.2 135 337-477 60-196 (208)
94 3qky_A Outer membrane assembly 98.8 2.4E-07 8.1E-12 85.2 17.8 170 241-431 25-225 (261)
95 3rjv_A Putative SEL1 repeat pr 98.8 1.1E-06 3.9E-11 77.9 21.4 176 314-501 4-198 (212)
96 4e6h_A MRNA 3'-END-processing 98.8 2E-05 7E-10 82.0 33.4 339 158-504 137-574 (679)
97 3rjv_A Putative SEL1 repeat pr 98.8 7.8E-07 2.7E-11 78.9 19.8 163 295-466 17-198 (212)
98 2yhc_A BAMD, UPF0169 lipoprote 98.7 1.9E-06 6.6E-11 77.1 20.5 189 295-505 3-218 (225)
99 2ifu_A Gamma-SNAP; membrane fu 98.7 3.5E-07 1.2E-11 86.3 16.0 193 208-428 4-222 (307)
100 2r5s_A Uncharacterized protein 98.7 3.3E-07 1.1E-11 78.7 14.2 77 385-462 93-170 (176)
101 3qou_A Protein YBBN; thioredox 98.7 8.6E-07 2.9E-11 82.8 18.1 160 299-462 120-281 (287)
102 2r5s_A Uncharacterized protein 98.7 6E-07 2E-11 77.0 14.9 157 269-428 9-171 (176)
103 3urz_A Uncharacterized protein 98.7 1.4E-06 4.9E-11 77.0 17.7 160 273-438 11-192 (208)
104 2yhc_A BAMD, UPF0169 lipoprote 98.6 1.9E-06 6.4E-11 77.2 18.6 103 343-465 108-213 (225)
105 2pzi_A Probable serine/threoni 98.6 5.9E-07 2E-11 94.6 17.3 169 242-416 402-583 (681)
106 3dra_A Protein farnesyltransfe 98.6 3.5E-05 1.2E-09 72.0 27.2 217 244-464 46-286 (306)
107 3qou_A Protein YBBN; thioredox 98.6 9.9E-07 3.4E-11 82.3 16.7 145 245-391 131-280 (287)
108 2pzi_A Probable serine/threoni 98.6 6.4E-07 2.2E-11 94.4 17.0 173 307-486 402-583 (681)
109 2vsy_A XCC0866; transferase, g 98.6 1.4E-06 4.7E-11 89.9 18.9 154 309-466 2-158 (568)
110 3dra_A Protein farnesyltransfe 98.6 2.7E-05 9.1E-10 72.8 25.8 219 280-502 47-290 (306)
111 2vsy_A XCC0866; transferase, g 98.6 1.1E-06 3.9E-11 90.6 17.9 149 245-396 3-158 (568)
112 2ifu_A Gamma-SNAP; membrane fu 98.6 1.2E-06 4.1E-11 82.6 16.0 210 279-493 4-254 (307)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.6 4.2E-06 1.4E-10 73.8 18.3 126 269-395 9-150 (213)
114 4ga2_A E3 SUMO-protein ligase 98.6 3.7E-07 1.3E-11 76.1 10.7 141 272-415 3-148 (150)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.5 5.8E-06 2E-10 72.9 17.8 133 332-471 7-154 (213)
116 3u3w_A Transcriptional activat 98.5 6.3E-06 2.1E-10 77.0 18.8 160 303-462 82-263 (293)
117 3u3w_A Transcriptional activat 98.5 1.3E-05 4.5E-10 74.8 21.0 159 270-428 79-264 (293)
118 2qfc_A PLCR protein; TPR, HTH, 98.5 1.5E-05 5.3E-10 74.3 20.8 168 297-464 76-265 (293)
119 4ga2_A E3 SUMO-protein ligase 98.5 3E-06 1E-10 70.5 14.0 110 205-317 7-120 (150)
120 2qfc_A PLCR protein; TPR, HTH, 98.4 1.9E-05 6.6E-10 73.7 20.3 167 332-498 76-264 (293)
121 1na0_A Designed protein CTPR3; 98.4 1.1E-05 3.7E-10 63.8 15.8 93 299-393 12-104 (125)
122 1a17_A Serine/threonine protei 98.4 9.6E-06 3.3E-10 68.0 16.2 126 299-427 16-143 (166)
123 1a17_A Serine/threonine protei 98.4 1.2E-05 4E-10 67.5 16.5 129 332-463 14-144 (166)
124 1na0_A Designed protein CTPR3; 98.4 1.2E-05 4.1E-10 63.5 15.4 111 266-378 9-123 (125)
125 2uy1_A Cleavage stimulation fa 98.4 0.001 3.5E-08 66.8 32.7 325 156-499 43-412 (493)
126 3gw4_A Uncharacterized protein 98.4 3.2E-06 1.1E-10 73.8 12.8 156 307-463 3-174 (203)
127 4f3v_A ESX-1 secretion system 98.4 4.2E-06 1.4E-10 76.6 13.6 186 278-470 18-240 (282)
128 4f3v_A ESX-1 secretion system 98.4 2.6E-05 8.9E-10 71.3 18.5 185 243-431 18-238 (282)
129 3gw4_A Uncharacterized protein 98.4 2.5E-06 8.4E-11 74.5 11.5 152 278-429 4-175 (203)
130 2c2l_A CHIP, carboxy terminus 98.4 2.9E-05 9.9E-10 72.0 18.9 192 295-501 3-200 (281)
131 3q7a_A Farnesyltransferase alp 98.3 0.00047 1.6E-08 65.2 26.0 214 248-465 71-331 (349)
132 2vyi_A SGTA protein; chaperone 98.3 2E-05 6.7E-10 62.8 14.4 116 298-416 14-129 (131)
133 2lni_A Stress-induced-phosphop 98.3 1.5E-05 5.3E-10 63.9 13.8 97 296-394 16-112 (133)
134 2vyi_A SGTA protein; chaperone 98.3 1.9E-05 6.6E-10 62.9 14.1 117 332-451 13-129 (131)
135 4gco_A Protein STI-1; structur 98.3 2.4E-05 8.2E-10 62.8 14.4 90 269-359 16-109 (126)
136 3gyz_A Chaperone protein IPGC; 98.3 4.2E-05 1.4E-09 63.5 16.1 103 366-472 36-138 (151)
137 2lni_A Stress-induced-phosphop 98.3 1.4E-05 4.9E-10 64.0 12.9 116 263-380 13-132 (133)
138 2c2l_A CHIP, carboxy terminus 98.2 4.3E-05 1.5E-09 70.9 17.3 189 265-464 3-198 (281)
139 2uy1_A Cleavage stimulation fa 98.2 0.0019 6.6E-08 64.8 30.4 318 162-497 17-380 (493)
140 3q7a_A Farnesyltransferase alp 98.2 0.00058 2E-08 64.5 24.8 216 279-498 67-329 (349)
141 3gyz_A Chaperone protein IPGC; 98.2 1.5E-05 5.2E-10 66.2 12.4 92 268-360 38-133 (151)
142 4gco_A Protein STI-1; structur 98.2 4.4E-05 1.5E-09 61.2 14.7 97 297-395 14-110 (126)
143 2e2e_A Formate-dependent nitri 98.2 2.2E-05 7.7E-10 66.9 13.3 114 245-360 24-144 (177)
144 1p5q_A FKBP52, FK506-binding p 98.2 3.2E-05 1.1E-09 73.8 15.4 117 267-385 148-283 (336)
145 2e2e_A Formate-dependent nitri 98.2 2.1E-05 7.2E-10 67.1 12.8 120 308-430 22-144 (177)
146 1p5q_A FKBP52, FK506-binding p 98.2 5.9E-05 2E-09 72.0 16.5 130 295-428 146-292 (336)
147 2fbn_A 70 kDa peptidylprolyl i 98.1 8.4E-06 2.9E-10 71.2 9.1 148 272-421 10-176 (198)
148 1elw_A TPR1-domain of HOP; HOP 98.1 0.00014 4.8E-09 56.5 15.1 94 299-394 7-100 (118)
149 2vgx_A Chaperone SYCD; alterna 98.1 1.6E-05 5.4E-10 65.9 9.3 23 404-426 92-114 (148)
150 3upv_A Heat shock protein STI1 98.1 0.0001 3.4E-09 58.7 13.9 89 269-358 7-99 (126)
151 1elw_A TPR1-domain of HOP; HOP 98.1 0.00016 5.5E-09 56.1 14.8 95 333-429 6-100 (118)
152 3upv_A Heat shock protein STI1 98.1 0.00016 5.5E-09 57.5 15.0 95 368-464 6-100 (126)
153 4b4t_Q 26S proteasome regulato 98.1 0.0002 6.8E-09 70.6 18.8 192 273-464 11-244 (434)
154 2vgx_A Chaperone SYCD; alterna 98.1 6.1E-05 2.1E-09 62.3 12.6 91 268-359 23-117 (148)
155 4gcn_A Protein STI-1; structur 98.0 0.00011 3.8E-09 58.8 13.6 104 368-474 10-119 (127)
156 3dss_A Geranylgeranyl transfer 98.0 0.0013 4.6E-08 61.7 22.6 133 243-378 42-191 (331)
157 2kck_A TPR repeat; tetratricop 98.0 5.5E-05 1.9E-09 58.3 11.1 93 300-394 10-105 (112)
158 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00012 4E-09 61.5 13.9 94 266-360 11-108 (164)
159 1elr_A TPR2A-domain of HOP; HO 98.0 6.2E-05 2.1E-09 59.9 11.6 95 299-394 7-107 (131)
160 4gcn_A Protein STI-1; structur 98.0 8.8E-05 3E-09 59.4 12.4 92 268-359 10-111 (127)
161 2xcb_A PCRH, regulatory protei 98.0 8.9E-05 3E-09 60.7 12.6 87 271-358 23-113 (142)
162 3q49_B STIP1 homology and U bo 98.0 0.00013 4.5E-09 58.8 13.6 96 296-393 9-104 (137)
163 1elr_A TPR2A-domain of HOP; HO 98.0 7.2E-05 2.5E-09 59.5 11.9 107 368-477 6-118 (131)
164 2kck_A TPR repeat; tetratricop 98.0 6E-05 2E-09 58.1 11.0 96 333-430 8-106 (112)
165 2fbn_A 70 kDa peptidylprolyl i 98.0 8.8E-05 3E-09 64.6 12.8 125 269-395 41-186 (198)
166 4b4t_Q 26S proteasome regulato 98.0 0.00038 1.3E-08 68.5 18.7 187 243-429 16-244 (434)
167 3ro3_A PINS homolog, G-protein 98.0 7E-05 2.4E-09 62.0 11.4 131 369-499 12-157 (164)
168 3q49_B STIP1 homology and U bo 97.9 0.00022 7.4E-09 57.5 13.9 98 330-429 8-105 (137)
169 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00025 8.5E-09 59.5 14.5 98 296-395 11-108 (164)
170 3ro3_A PINS homolog, G-protein 97.9 6.6E-05 2.3E-09 62.2 10.5 60 333-392 51-115 (164)
171 2xcb_A PCRH, regulatory protei 97.9 0.00015 5.2E-09 59.2 12.4 90 337-428 24-113 (142)
172 2dba_A Smooth muscle cell asso 97.9 0.00035 1.2E-08 56.9 14.8 94 297-393 29-126 (148)
173 2dba_A Smooth muscle cell asso 97.9 0.00055 1.9E-08 55.7 15.3 96 366-464 28-127 (148)
174 1hxi_A PEX5, peroxisome target 97.8 0.00015 5.3E-09 57.5 10.7 88 271-359 22-113 (121)
175 1hxi_A PEX5, peroxisome target 97.8 0.00028 9.7E-09 55.9 11.4 88 374-463 25-112 (121)
176 2xev_A YBGF; tetratricopeptide 97.7 0.00045 1.6E-08 54.9 12.5 99 371-472 7-110 (129)
177 3n71_A Histone lysine methyltr 97.7 0.00015 5.1E-09 72.5 11.2 124 376-499 319-463 (490)
178 3n71_A Histone lysine methyltr 97.7 0.0003 1E-08 70.2 13.3 121 274-394 317-463 (490)
179 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00045 1.5E-08 68.9 14.4 117 267-385 269-404 (457)
180 3dss_A Geranylgeranyl transfer 97.7 0.023 8E-07 53.2 25.1 95 247-343 90-191 (331)
181 2xev_A YBGF; tetratricopeptide 97.7 0.00087 3E-08 53.2 13.4 95 335-431 6-106 (129)
182 1wao_1 Serine/threonine protei 97.7 0.00032 1.1E-08 70.3 12.9 84 275-359 15-102 (477)
183 1klx_A Cysteine rich protein B 97.6 0.0017 5.7E-08 52.7 14.4 110 346-466 10-127 (138)
184 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00068 2.3E-08 67.5 14.2 123 295-421 267-405 (457)
185 1klx_A Cysteine rich protein B 97.6 0.00071 2.4E-08 55.0 11.6 112 309-431 8-127 (138)
186 1wao_1 Serine/threonine protei 97.6 0.00015 5.2E-09 72.6 8.8 113 242-356 17-135 (477)
187 1ihg_A Cyclophilin 40; ppiase 97.6 0.00098 3.3E-08 64.3 13.9 89 331-421 273-361 (370)
188 3k9i_A BH0479 protein; putativ 97.6 0.00019 6.6E-09 56.3 7.4 86 309-395 3-90 (117)
189 3rkv_A Putative peptidylprolyl 97.6 0.0012 4.2E-08 55.0 12.9 69 401-472 63-131 (162)
190 1ihg_A Cyclophilin 40; ppiase 97.5 0.0013 4.6E-08 63.3 13.9 90 400-492 272-362 (370)
191 3k9i_A BH0479 protein; putativ 97.5 0.00027 9.4E-09 55.4 7.1 85 344-429 3-89 (117)
192 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00044 1.5E-08 65.8 8.9 151 331-503 179-331 (338)
193 3rkv_A Putative peptidylprolyl 97.4 0.0021 7.3E-08 53.5 12.0 63 332-395 64-126 (162)
194 2if4_A ATFKBP42; FKBP-like, al 97.3 0.0007 2.4E-08 64.5 9.6 61 298-359 232-292 (338)
195 2hr2_A Hypothetical protein; a 97.3 0.0033 1.1E-07 51.9 12.2 56 269-324 14-85 (159)
196 2hr2_A Hypothetical protein; a 97.3 0.0048 1.6E-07 50.9 12.9 62 438-499 59-130 (159)
197 2l6j_A TPR repeat-containing p 97.2 0.00034 1.2E-08 53.9 4.7 63 401-464 4-66 (111)
198 3mkq_A Coatomer beta'-subunit; 97.0 0.0083 2.8E-07 64.2 15.4 45 307-357 663-707 (814)
199 1dce_A Protein (RAB geranylger 97.0 0.043 1.5E-06 55.9 19.5 172 243-418 41-243 (567)
200 1dce_A Protein (RAB geranylger 97.0 0.03 1E-06 57.1 18.3 167 281-451 44-241 (567)
201 2kat_A Uncharacterized protein 97.0 0.0068 2.3E-07 46.9 10.8 76 315-392 4-79 (115)
202 2l6j_A TPR repeat-containing p 97.0 0.0024 8E-08 48.9 8.0 57 268-324 6-66 (111)
203 1na3_A Designed protein CTPR2; 97.0 0.0067 2.3E-07 44.3 10.2 56 269-324 12-71 (91)
204 1wy6_A Hypothetical protein ST 96.9 0.071 2.4E-06 41.8 14.8 139 207-363 19-157 (172)
205 1na3_A Designed protein CTPR2; 96.9 0.013 4.6E-07 42.6 11.0 78 333-412 11-88 (91)
206 1zu2_A Mitochondrial import re 96.9 0.0052 1.8E-07 50.6 9.1 116 378-503 14-150 (158)
207 2kat_A Uncharacterized protein 96.8 0.011 3.8E-07 45.7 10.3 62 365-427 18-79 (115)
208 3ma5_A Tetratricopeptide repea 96.7 0.0086 3E-07 45.1 8.9 59 297-356 8-66 (100)
209 3mkq_A Coatomer beta'-subunit; 96.7 0.024 8.1E-07 60.6 15.0 155 274-463 607-763 (814)
210 1zu2_A Mitochondrial import re 96.6 0.011 3.9E-07 48.5 9.2 78 281-359 17-119 (158)
211 3ma5_A Tetratricopeptide repea 96.5 0.011 3.6E-07 44.6 8.2 62 263-324 4-69 (100)
212 3qww_A SET and MYND domain-con 96.5 0.006 2E-07 59.9 8.3 87 378-464 310-410 (433)
213 3qwp_A SET and MYND domain-con 96.5 0.013 4.6E-07 57.4 10.7 92 373-464 294-399 (429)
214 3ly7_A Transcriptional activat 96.4 0.16 5.6E-06 47.9 17.0 58 282-341 180-243 (372)
215 3qwp_A SET and MYND domain-con 96.3 0.016 5.5E-07 56.8 10.2 93 337-429 293-399 (429)
216 3qww_A SET and MYND domain-con 96.3 0.016 5.3E-07 56.9 9.9 78 245-322 312-408 (433)
217 3ly7_A Transcriptional activat 96.1 0.14 4.8E-06 48.3 14.8 143 328-476 191-348 (372)
218 2kc7_A BFR218_protein; tetratr 95.8 0.022 7.6E-07 42.4 6.6 53 376-429 10-63 (99)
219 2kc7_A BFR218_protein; tetratr 95.5 0.046 1.6E-06 40.6 7.5 54 410-464 9-63 (99)
220 1wy6_A Hypothetical protein ST 95.4 0.71 2.4E-05 36.3 13.8 140 342-503 18-157 (172)
221 3mkq_B Coatomer subunit alpha; 95.3 0.6 2.1E-05 38.9 14.0 130 339-498 13-142 (177)
222 3mkq_B Coatomer subunit alpha; 95.2 1.2 4E-05 37.2 16.3 97 308-425 17-113 (177)
223 1pc2_A Mitochondria fission pr 94.9 0.19 6.6E-06 40.8 9.5 86 382-471 14-104 (152)
224 2v5f_A Prolyl 4-hydroxylase su 94.6 0.38 1.3E-05 36.2 10.3 70 400-471 4-79 (104)
225 1pc2_A Mitochondria fission pr 94.6 0.29 9.9E-06 39.7 9.9 86 416-503 13-103 (152)
226 3u64_A Protein TP_0956; tetrat 94.1 0.71 2.4E-05 41.8 12.2 88 383-472 180-278 (301)
227 3bee_A Putative YFRE protein; 93.8 0.72 2.5E-05 33.9 10.1 46 313-359 26-71 (93)
228 3bee_A Putative YFRE protein; 93.7 0.84 2.9E-05 33.5 10.2 66 399-465 4-72 (93)
229 2v5f_A Prolyl 4-hydroxylase su 93.4 0.47 1.6E-05 35.6 8.8 69 435-503 4-78 (104)
230 3u64_A Protein TP_0956; tetrat 92.5 1.5 5.3E-05 39.7 11.9 67 331-397 199-271 (301)
231 1nzn_A CGI-135 protein, fissio 91.9 0.89 3.1E-05 35.4 8.4 93 375-471 10-107 (126)
232 4gns_B Protein CSD3, chitin bi 91.3 1.4 4.6E-05 46.1 11.6 125 197-323 250-398 (754)
233 1nzn_A CGI-135 protein, fissio 90.8 1.5 5E-05 34.2 8.7 94 408-503 8-106 (126)
234 4h7y_A Dual specificity protei 90.8 2.7 9.3E-05 33.8 10.2 54 380-434 74-127 (161)
235 4h7y_A Dual specificity protei 90.6 2.7 9.1E-05 33.8 10.0 114 365-481 12-138 (161)
236 2ff4_A Probable regulatory pro 90.1 0.66 2.3E-05 44.6 7.6 75 401-476 171-250 (388)
237 2ff4_A Probable regulatory pro 88.7 1.7 5.9E-05 41.6 9.4 54 303-357 178-231 (388)
238 4gns_B Protein CSD3, chitin bi 88.3 4.3 0.00015 42.3 12.5 26 335-360 252-278 (754)
239 4fhn_B Nucleoporin NUP120; pro 88.3 9.4 0.00032 42.3 16.1 146 271-419 817-989 (1139)
240 1qsa_A Protein (soluble lytic 88.2 24 0.00083 35.9 24.5 116 380-499 228-347 (618)
241 4b4t_P 26S proteasome regulato 85.8 27 0.00092 33.9 19.5 94 335-428 141-245 (445)
242 1v54_E Cytochrome C oxidase po 85.4 4.1 0.00014 30.1 7.3 45 349-393 28-72 (109)
243 4fhn_B Nucleoporin NUP120; pro 83.1 20 0.00068 39.7 15.4 146 337-490 818-990 (1139)
244 4b4t_P 26S proteasome regulato 82.8 36 0.0012 33.0 16.3 188 309-498 29-245 (445)
245 3txn_A 26S proteasome regulato 82.6 34 0.0012 32.5 21.7 237 197-437 21-290 (394)
246 1v54_E Cytochrome C oxidase po 82.5 13 0.00044 27.5 9.8 65 240-304 18-87 (109)
247 4ady_A RPN2, 26S proteasome re 81.5 61 0.0021 34.7 21.6 268 204-482 383-672 (963)
248 1qsa_A Protein (soluble lytic 81.4 50 0.0017 33.6 22.8 22 478-499 388-409 (618)
249 3o48_A Mitochondria fission 1 79.3 18 0.00063 28.2 9.5 72 398-471 37-111 (134)
250 2uwj_G Type III export protein 79.2 17 0.00057 26.8 8.7 84 246-334 21-105 (115)
251 2p58_C Putative type III secre 78.8 17 0.00059 26.7 9.5 84 246-334 22-106 (116)
252 3lpz_A GET4 (YOR164C homolog); 77.7 44 0.0015 30.9 18.7 166 197-393 37-214 (336)
253 1wdy_A 2-5A-dependent ribonucl 77.6 3.3 0.00011 37.0 5.9 20 200-219 7-26 (285)
254 2y69_E Cytochrome C oxidase su 76.4 13 0.00045 29.1 7.7 44 350-393 72-115 (152)
255 2wpv_A GET4, UPF0363 protein Y 76.4 46 0.0016 30.4 21.6 25 400-424 133-157 (312)
256 3lvg_A Clathrin heavy chain 1; 75.5 0.014 4.8E-07 56.6 -10.9 209 197-423 56-284 (624)
257 2y69_E Cytochrome C oxidase su 75.5 27 0.00093 27.3 9.8 65 240-304 61-130 (152)
258 1y8m_A FIS1; mitochondria, unk 71.2 37 0.0013 26.9 11.9 72 398-471 36-110 (144)
259 4g8k_A 2-5A-dependent ribonucl 70.8 18 0.00062 33.3 9.3 107 386-507 219-330 (337)
260 4b4t_R RPN7, 26S proteasome re 70.7 39 0.0013 32.6 11.8 54 269-322 134-194 (429)
261 3eiq_C Programmed cell death p 70.5 19 0.00065 33.7 9.0 207 269-482 57-299 (358)
262 3txn_A 26S proteasome regulato 70.0 76 0.0026 30.1 25.0 158 269-427 22-207 (394)
263 4b4t_R RPN7, 26S proteasome re 69.2 35 0.0012 32.9 11.2 109 333-441 133-248 (429)
264 1k1a_A B-cell lymphoma 3-encod 67.6 9.7 0.00033 32.9 6.3 83 304-391 14-101 (241)
265 1wdy_A 2-5A-dependent ribonucl 67.4 12 0.00039 33.3 7.0 213 271-506 41-281 (285)
266 3o48_A Mitochondria fission 1 65.7 46 0.0016 26.0 10.3 73 432-504 36-111 (134)
267 1zbp_A Hypothetical protein VP 65.4 45 0.0015 29.6 9.8 114 340-464 6-128 (273)
268 2uwj_G Type III export protein 64.9 39 0.0013 24.8 9.0 76 381-466 21-98 (115)
269 2p58_C Putative type III secre 64.4 40 0.0014 24.8 9.5 76 381-466 22-99 (116)
270 2zu6_B Programmed cell death p 63.6 29 0.00098 31.7 8.6 72 404-476 169-242 (307)
271 2wpv_A GET4, UPF0363 protein Y 63.1 91 0.0031 28.4 19.6 167 268-463 35-215 (312)
272 3ffl_A Anaphase-promoting comp 62.2 43 0.0015 27.3 8.4 125 361-498 13-149 (167)
273 3ffl_A Anaphase-promoting comp 60.7 35 0.0012 27.8 7.7 126 325-463 12-149 (167)
274 3lpz_A GET4 (YOR164C homolog); 58.0 1.2E+02 0.004 28.0 23.9 80 400-498 135-214 (336)
275 3rjo_A Endoplasmic reticulum a 57.9 1.3E+02 0.0045 28.6 21.6 32 400-431 266-297 (419)
276 1zbp_A Hypothetical protein VP 57.7 1E+02 0.0035 27.4 12.9 116 374-500 5-129 (273)
277 3esl_A Checkpoint serine/threo 57.7 68 0.0023 27.1 9.2 53 382-434 95-148 (202)
278 3lvg_A Clathrin heavy chain 1; 57.2 0.21 7.2E-06 48.6 -6.9 238 231-495 55-315 (624)
279 4ady_A RPN2, 26S proteasome re 57.0 2.1E+02 0.0072 30.7 22.4 226 199-429 415-657 (963)
280 4fke_A Aminopeptidase N; zinc 56.6 2.1E+02 0.0072 30.6 16.2 158 335-499 690-859 (909)
281 3esl_A Checkpoint serine/threo 54.5 98 0.0033 26.1 10.5 67 297-364 81-148 (202)
282 3jxi_A Vanilloid receptor-rela 51.5 8.2 0.00028 34.0 2.8 191 303-500 9-251 (260)
283 1y8m_A FIS1; mitochondria, unk 50.3 93 0.0032 24.6 12.0 72 433-504 36-110 (144)
284 2nsz_A Programmed cell death p 46.5 76 0.0026 24.5 7.4 66 369-435 10-77 (129)
285 3hra_A Ankyrin repeat family p 46.5 13 0.00043 31.0 3.1 38 455-492 157-196 (201)
286 3eu9_A Huntingtin-interacting 45.9 12 0.00039 32.2 2.9 24 478-501 214-237 (240)
287 3t8k_A Uncharacterized protein 45.7 21 0.00071 29.7 4.3 131 374-504 43-184 (186)
288 2d2s_A Exocyst complex compone 45.2 1.3E+02 0.0045 26.0 9.5 88 303-393 25-118 (235)
289 4a1g_A Mitotic checkpoint seri 43.8 82 0.0028 25.2 7.2 50 420-469 84-134 (152)
290 3t8k_A Uncharacterized protein 41.9 39 0.0013 28.0 5.5 54 277-330 14-69 (186)
291 1k1a_A B-cell lymphoma 3-encod 40.8 40 0.0014 28.8 5.6 86 337-427 12-102 (241)
292 2wvi_A Mitotic checkpoint seri 39.4 1E+02 0.0035 25.0 7.3 50 420-469 79-129 (164)
293 4gq2_M Nucleoporin NUP120; bet 39.0 2.9E+02 0.01 29.7 13.0 49 367-415 898-950 (950)
294 2ion_A PDCD4, programmed cell 38.6 1.4E+02 0.0047 23.8 7.9 22 271-292 14-35 (152)
295 2fe3_A Peroxide operon regulat 37.8 1.3E+02 0.0044 23.6 7.7 57 428-485 14-70 (145)
296 2ion_A PDCD4, programmed cell 37.8 71 0.0024 25.6 6.1 68 368-436 11-80 (152)
297 4b4t_S RPN3, 26S proteasome re 37.5 24 0.00083 34.8 3.8 186 195-397 231-431 (523)
298 2wvi_A Mitotic checkpoint seri 37.0 1.7E+02 0.0057 23.7 9.7 54 313-366 77-131 (164)
299 2zu6_B Programmed cell death p 36.6 2.4E+02 0.0083 25.5 10.3 200 299-503 6-234 (307)
300 3ltm_A Alpha-REP4; protein eng 36.3 1.8E+02 0.0062 23.9 19.2 188 279-486 15-203 (211)
301 3aji_A 26S proteasome non-ATPa 35.5 42 0.0014 28.4 4.9 138 272-424 9-159 (231)
302 2nsz_A Programmed cell death p 35.5 1.5E+02 0.0051 22.8 9.3 22 271-292 12-33 (129)
303 1mzb_A Ferric uptake regulatio 35.4 1.2E+02 0.0042 23.4 7.2 61 391-452 8-69 (136)
304 2pnn_A Transient receptor pote 35.1 17 0.00057 32.2 2.2 118 303-425 17-169 (273)
305 1wgl_A TOLL-interacting protei 34.5 29 0.001 22.7 2.6 21 309-329 36-56 (59)
306 3hra_A Ankyrin repeat family p 34.0 42 0.0014 27.7 4.5 96 410-507 78-174 (201)
307 3eu9_A Huntingtin-interacting 33.5 33 0.0011 29.2 3.8 15 480-494 183-197 (240)
308 2xig_A Ferric uptake regulatio 33.0 1.4E+02 0.0047 23.6 7.2 44 407-450 32-75 (150)
309 3eyy_A Putative iron uptake re 32.5 1.2E+02 0.004 23.9 6.6 33 453-485 34-66 (145)
310 2fu4_A Ferric uptake regulatio 32.3 1.2E+02 0.0042 20.7 6.7 59 427-486 8-67 (83)
311 2d2s_A Exocyst complex compone 31.3 2.6E+02 0.0087 24.2 9.7 91 336-429 23-119 (235)
312 3mv2_A Coatomer subunit alpha; 30.2 3.2E+02 0.011 24.9 11.0 129 306-466 124-257 (325)
313 2w57_A Ferric uptake regulatio 30.0 1.4E+02 0.0048 23.6 6.7 36 416-451 32-67 (150)
314 3eiq_C Programmed cell death p 29.6 3.4E+02 0.012 25.1 13.0 78 369-447 220-299 (358)
315 1otr_A Protein CUE2; protein-p 29.1 1.1E+02 0.0036 19.1 5.0 40 283-322 5-44 (49)
316 2r9g_A AAA ATPase, central reg 29.1 2.6E+02 0.0088 23.5 9.7 35 310-345 28-62 (204)
317 1ug3_A EIF4GI, eukaryotic prot 29.1 1.1E+02 0.0036 28.3 6.6 148 335-496 15-166 (339)
318 4aez_C MAD3, mitotic spindle c 28.5 1.4E+02 0.0048 25.6 6.6 51 384-434 132-183 (223)
319 4a1g_A Mitotic checkpoint seri 28.2 2.3E+02 0.0078 22.6 10.1 54 312-365 81-135 (152)
320 4g8k_A 2-5A-dependent ribonucl 27.3 1.4E+02 0.0049 26.9 7.4 39 252-290 220-260 (337)
321 4fke_A Aminopeptidase N; zinc 27.3 5.9E+02 0.02 27.1 15.2 158 300-464 690-859 (909)
322 4aez_C MAD3, mitotic spindle c 26.6 1.5E+02 0.0051 25.4 6.5 60 228-291 115-175 (223)
323 2fe3_A Peroxide operon regulat 26.4 2.3E+02 0.0079 22.1 7.8 58 392-450 13-70 (145)
324 3pvs_A Replication-associated 26.1 4.4E+02 0.015 25.2 11.7 34 378-411 267-300 (447)
325 3kea_A K1L; tropism, ANK repea 24.7 75 0.0026 28.2 4.7 17 375-391 167-183 (285)
326 2r9g_A AAA ATPase, central reg 24.6 3.1E+02 0.011 23.0 10.1 17 380-396 28-44 (204)
327 3pvs_A Replication-associated 24.4 4.7E+02 0.016 25.0 12.3 62 407-468 258-327 (447)
328 3kea_A K1L; tropism, ANK repea 24.2 69 0.0024 28.4 4.3 203 271-496 33-243 (285)
329 2rfa_A Transient receptor pote 23.7 1.1E+02 0.0037 25.8 5.4 57 443-500 158-223 (232)
330 1ckk_B Camkk, protein (RAT Ca2 23.6 21 0.00073 18.8 0.4 12 9-20 15-26 (26)
331 3bge_A Predicted ATPase; struc 23.6 3.2E+02 0.011 22.8 8.5 33 379-411 20-52 (201)
332 3utm_A Tankyrase-1; tankyrase, 23.6 2.8E+02 0.0096 24.7 8.7 115 271-400 26-151 (351)
333 3kae_A CDC27, possible protein 23.4 3.1E+02 0.011 22.5 7.7 52 410-461 71-139 (242)
334 4ets_A Ferric uptake regulatio 23.3 2.2E+02 0.0076 22.8 6.8 58 393-451 25-84 (162)
335 3ltj_A Alpharep-4; protein eng 22.6 3.1E+02 0.011 22.2 20.4 188 280-487 11-199 (201)
336 1mzb_A Ferric uptake regulatio 22.5 2.6E+02 0.009 21.4 7.1 59 357-416 9-68 (136)
337 2fu4_A Ferric uptake regulatio 22.4 1.9E+02 0.0065 19.7 6.7 8 386-393 37-44 (83)
338 3aji_A 26S proteasome non-ATPa 22.0 1.7E+02 0.0057 24.4 6.3 19 202-220 10-28 (231)
339 2qx5_A Nucleoporin NIC96; mRNA 21.9 6.4E+02 0.022 25.6 11.9 275 200-495 157-467 (661)
340 3b7b_A Euchromatic histone-lys 21.8 62 0.0021 27.5 3.4 22 478-499 214-235 (237)
341 2yru_A Steroid receptor RNA ac 21.5 1.4E+02 0.0048 22.6 4.8 42 318-359 48-89 (118)
342 3d5l_A Regulatory protein RECX 21.2 3.8E+02 0.013 22.7 9.6 111 382-495 92-204 (221)
343 3ctd_A Putative ATPase, AAA fa 20.9 3.8E+02 0.013 22.6 8.8 92 302-394 38-137 (213)
344 3eyy_A Putative iron uptake re 20.7 2.8E+02 0.0095 21.6 6.8 58 356-415 9-66 (145)
345 2o03_A Probable zinc uptake re 20.6 1.6E+02 0.0055 22.5 5.2 45 441-485 15-59 (131)
346 3bge_A Predicted ATPase; struc 20.4 3.8E+02 0.013 22.4 8.6 46 335-380 8-56 (201)
347 2b7e_A PRE-mRNA processing pro 20.2 76 0.0026 20.7 2.6 29 313-341 3-31 (59)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.3e-33 Score=285.54 Aligned_cols=189 Identities=15% Similarity=0.155 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC---------hHHHHHHHHHHHhCCCCCCH
Q 047221 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ---------DADACELLEEMLGRNCHPDA 366 (509)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~---------~~~a~~~~~~m~~~g~~p~~ 366 (509)
...++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346788899999999999999999999999999999999999999987665 68899999999999999999
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047221 367 ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLH 446 (509)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 446 (509)
.||++||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc
Q 047221 447 DKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTS 484 (509)
Q Consensus 447 ~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 484 (509)
++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999998764
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.8e-32 Score=275.85 Aligned_cols=215 Identities=14% Similarity=0.096 Sum_probs=165.7
Q ss_pred HHHHHHHHhhhCCCccCH-HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047221 213 TMRQLLNDFNVYQVCLNE-KAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKK 291 (509)
Q Consensus 213 ~A~~l~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (509)
.+..+.+++.+++..+.. ..++.+|.+| ++.|++++|.++|++|.+.|+.||..+||+||.+|++.+..+++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c-~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------ 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMC-SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------ 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence 344455555555554332 2455556633 33444666666666666666666666666666666655543321
Q ss_pred cCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047221 292 TERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEI 371 (509)
Q Consensus 292 m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 371 (509)
.+.+.+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 12234678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 047221 372 FIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKN 449 (509)
Q Consensus 372 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 449 (509)
||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.|+..|+..
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999863
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.98 E-value=1.1e-29 Score=265.50 Aligned_cols=335 Identities=10% Similarity=-0.037 Sum_probs=173.5
Q ss_pred CCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCC----------------ccChhHHHHHHHHHhccCCHHHHHHH
Q 047221 156 VSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEF----------------YKNSDICSLVIDNCGRLDDYETMRQL 217 (509)
Q Consensus 156 ~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~----------------~~~~~~~~~li~~~~~~g~~~~A~~l 217 (509)
..++..+++.++..+.+.|+ +|+++|+.+ .|.. ..++.+|+.++.+|.+.|++++|.++
T Consensus 146 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 146 YNRSSACRYLAAFCLVKLYDWQGALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhhHHHHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 46677777777777777775 677777743 2322 22466788888888888888888888
Q ss_pred HHHhhhCCCccCHHHHHHH--------------------------------------HHHHHhccCCHHHHHHHHHHHHH
Q 047221 218 LNDFNVYQVCLNEKAFGFL--------------------------------------PVLISSKALTKKGIWRVVEVLNQ 259 (509)
Q Consensus 218 ~~~m~~~~~~p~~~~~~~l--------------------------------------l~~~~~~~~~~~~a~~~~~~m~~ 259 (509)
|++|.+.+.. +...+..+ +. .+.+.|++++|.++|+.+.+
T Consensus 223 ~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~A~~~~~~~~~ 300 (597)
T 2xpi_A 223 YKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLN-KTSHEDELRRAEDYLSSING 300 (597)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSC-TTTTHHHHHHHHHHHHTSTT
T ss_pred HHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHH-HHcCcchHHHHHHHHHHhhc
Confidence 8887665321 11111111 11 01122234445555544443
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCC----------------------------------HHHHHH
Q 047221 260 VGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERK----------------------------------VSYYNI 301 (509)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~----------------------------------~~~~~~ 301 (509)
. +++..+++.++.+|.+.|++++|.++|+++ +.+ ..+|+.
T Consensus 301 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 378 (597)
T 2xpi_A 301 L--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLA 378 (597)
T ss_dssp G--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred C--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHH
Confidence 3 355556666666666666666666666554 223 444444
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047221 302 LIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK 381 (509)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 381 (509)
++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|+
T Consensus 379 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 456 (597)
T 2xpi_A 379 VGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGN 456 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCC
Confidence 4455555555555555555444432 2234445555555555555555555555544432 2244445555555555555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhCCChHHH
Q 047221 382 FDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK----YKSSS--NMLYSLLASLHDKNNNPVMA 455 (509)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a 455 (509)
+++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|
T Consensus 457 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 535 (597)
T 2xpi_A 457 ILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAA 535 (597)
T ss_dssp HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHH
Confidence 555555555554432 224445555555555555555555555555443 33444 44555555555555555555
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 456 KNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 456 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
+++|+++.+.+ +.+..+|..+..+|.+.|++++|.++++++.+..
T Consensus 536 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 536 IDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 55555554432 2244455555555555555555555555555443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.1e-28 Score=252.25 Aligned_cols=315 Identities=12% Similarity=0.019 Sum_probs=263.3
Q ss_pred CHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCC---------------------------------------------
Q 047221 159 SNASVIEILRVLNSEKV--SALCFLKYMREIMPEF--------------------------------------------- 191 (509)
Q Consensus 159 ~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~--------------------------------------------- 191 (509)
+..+++.+...+.+.|+ +|+++|+.|....|+.
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 47889999999999886 7999999884445531
Q ss_pred -----------------------ccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHH
Q 047221 192 -----------------------YKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKK 248 (509)
Q Consensus 192 -----------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 248 (509)
..+..+|+.++.+|.+.|++++|.++|++|.+.+. .+..++..++.++. ..|+.+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~ 356 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLH-ESGEKN 356 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHH-HHTCHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHH-HhCCHH
Confidence 14566777788888888888888888888776542 25566777777444 444588
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 047221 249 GIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQ 324 (509)
Q Consensus 249 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (509)
+|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++ +.+..+|+.++.+|.+.|++++|+++|++|.+
T Consensus 357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888887543 567889999999999999999999999986 46789999999999999999999999999998
Q ss_pred cCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC
Q 047221 325 VGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR----GLQPR 400 (509)
Q Consensus 325 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~ 400 (509)
.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+
T Consensus 436 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 436 LF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred hC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 75 5688999999999999999999999999998863 447899999999999999999999999999876 77887
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcC-HHHHHHH
Q 047221 401 --LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN-VSVYRRV 477 (509)
Q Consensus 401 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~l 477 (509)
..+|..+..+|.+.|++++|.++|+++.+.+ ..+..+|..+..+|.+.|++++|.++|+++.+. .|+ ...+..+
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l 590 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLL 590 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHH
Confidence 7899999999999999999999999998875 447899999999999999999999999999984 454 4455555
Q ss_pred HHHH
Q 047221 478 LKHL 481 (509)
Q Consensus 478 l~~~ 481 (509)
..+|
T Consensus 591 ~~~~ 594 (597)
T 2xpi_A 591 KRAL 594 (597)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 4443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=2e-21 Score=191.63 Aligned_cols=329 Identities=10% Similarity=-0.036 Sum_probs=277.0
Q ss_pred HHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccC-HHHHHHHHH
Q 047221 162 SVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLN-EKAFGFLPV 238 (509)
Q Consensus 162 ~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~ll~ 238 (509)
.+..+-..+...++ .|..+++......|+ +..+|..+...+.+.|++++|.+.|+++.+. .|+ ...|..+..
T Consensus 35 ~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 109 (388)
T 1w3b_A 35 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAA 109 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHH
Confidence 34444444555564 799999888666664 5569999999999999999999999999765 354 446777777
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccH
Q 047221 239 LISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKG 314 (509)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~ 314 (509)
++. ..|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++ +.+..+|+.+...|.+.|++++
T Consensus 110 ~~~-~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 110 ALV-AAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHH-HHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHH-HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 444 4555999999999998865 344567888999999999999999999886 4568999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047221 315 PRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK 394 (509)
Q Consensus 315 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 394 (509)
|++.|+++.+.+ +-+...|..+...+...|++++|...+++..+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 265 (388)
T 1w3b_A 188 AIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999875 4457788999999999999999999999988752 33578899999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHH
Q 047221 395 RGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474 (509)
Q Consensus 395 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 474 (509)
.+ +.+..+|..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|++.++++.+. .+.+..++
T Consensus 266 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~ 342 (388)
T 1w3b_A 266 LQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAH 342 (388)
T ss_dssp TC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHH
Confidence 64 3357889999999999999999999999998763 457789999999999999999999999999874 23457789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 475 RRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 475 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
..+...|.+.|++++|.+.++++.+..+
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999999999999987644
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=2.9e-20 Score=183.27 Aligned_cols=318 Identities=11% Similarity=-0.038 Sum_probs=271.1
Q ss_pred CCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHH
Q 047221 156 VSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAF 233 (509)
Q Consensus 156 ~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~ 233 (509)
.+.+...+..+...+.+.|+ +|++.|+.+....|+ +..+|..+..++.+.|++++|.+.|+++.+. .|+....
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 137 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCV 137 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34567788888889988886 899999999777785 3457999999999999999999999999765 4666665
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhc
Q 047221 234 GFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRR 309 (509)
Q Consensus 234 ~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~ 309 (509)
...+..++...|++++|...++.+.+.. +.+..+|..+...|.+.|++++|...|+++ +.+...|..+...+...
T Consensus 138 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 138 RSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 5555556777778999999999998864 446788999999999999999999999986 55688999999999999
Q ss_pred CCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 047221 310 CDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFF 389 (509)
Q Consensus 310 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 389 (509)
|++++|+..|++..+.. +-+..++..+..+|.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|...|
T Consensus 217 ~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 217 RIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp TCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988764 3457889999999999999999999999999863 335778999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc
Q 047221 390 NQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP 469 (509)
Q Consensus 390 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 469 (509)
+++.+.. +.+..+++.+...|.+.|++++|...++++.+.. +.+..+|..+...|.+.|++++|++.|+++.+. .|
T Consensus 295 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p 370 (388)
T 1w3b_A 295 NTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SP 370 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CT
T ss_pred HHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC
Confidence 9998873 5678999999999999999999999999998753 346778999999999999999999999999874 45
Q ss_pred -CHHHHHHHHHHHHhcC
Q 047221 470 -NVSVYRRVLKHLHTSH 485 (509)
Q Consensus 470 -~~~t~~~ll~~~~~~g 485 (509)
+...|..+...+.+.|
T Consensus 371 ~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 371 TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHhHHHHHHHcc
Confidence 4556666666655544
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=8.8e-20 Score=183.34 Aligned_cols=293 Identities=9% Similarity=-0.058 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 047221 161 ASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPV 238 (509)
Q Consensus 161 ~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 238 (509)
..+..+...+.+.|+ +|+++|+.+....|+ +..+|..+..++.+.|++++|...|+++.+.+. .+...+..+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 334444444444443 455555555333332 233455555555555555555555555444321 12233333333
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHc----CCCHHHH
Q 047221 239 LISSKALTKKGIWRVVEVLNQVGGSCLV---SGVRAL------------IEMFSVLGLYEMAKYVIKKT----ERKVSYY 299 (509)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m----~~~~~~~ 299 (509)
++...|++++|...++.+.+.. +.+. ..+..+ ...|.+.|++++|...|+++ +.+..++
T Consensus 103 -~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 103 -LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp -HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 2222333555555555554432 1111 222222 22244445555555555443 2344444
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------
Q 047221 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIF------- 372 (509)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l------- 372 (509)
..+...|.+.|++++|++.|+++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 555555555555555555555444332 2334444455555555555555555555444321 1122223222
Q ss_pred -----HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047221 373 -----IVYSCRVGKFDVAFNFFNQMVKRGLQPR-----LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLL 442 (509)
Q Consensus 373 -----i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 442 (509)
...|.+.|++++|...|+++.+. .|+ ...+..+..+|.+.|++++|...++++.+.. ..+...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 34444445555555555544442 222 2234444444555555555555554444321 1233444445
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 047221 443 ASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 443 i~~~~~~g~~~~a~~~~~~m~~ 464 (509)
..+|...|++++|.+.++++.+
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 5555555555555555554444
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1.1e-18 Score=175.19 Aligned_cols=302 Identities=12% Similarity=-0.003 Sum_probs=248.8
Q ss_pred cChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047221 193 KNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRAL 272 (509)
Q Consensus 193 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 272 (509)
.+...|..+...+.+.|++++|..+|+++.+.. +.+...+..+..++ ...|++++|...++.+.+.+ +.+..++..+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVF-LAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 356689999999999999999999999987653 23566777766644 45556999999999998875 4467889999
Q ss_pred HHHHHhcCCHHHHHHHHHHc---CC-CH---HHHHHHHH------------HHHhcCCccHHHHHHHHHHHcCCCCChHH
Q 047221 273 IEMFSVLGLYEMAKYVIKKT---ER-KV---SYYNILIK------------EMCRRCDFKGPRDLLVEMRQVGCEPITLT 333 (509)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m---~~-~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 333 (509)
..+|.+.|++++|...|+++ .| +. ..|..++. .+.+.|++++|++.|+++.+.. +.+..+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 99999999999999999986 33 34 66666644 4889999999999999998764 557888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH------
Q 047221 334 YNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAF------ 407 (509)
Q Consensus 334 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l------ 407 (509)
+..+..+|.+.|++++|.++|+++.+.. +.+..+|..+...|.+.|++++|...|+++.+.. +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence 9999999999999999999999988752 4468899999999999999999999999998653 2244555544
Q ss_pred ------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHH
Q 047221 408 ------IKGYFIFYRYEDAYKYVVLSADKYKSSS-----NMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRR 476 (509)
Q Consensus 408 ------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ 476 (509)
...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|++.++++.+.. +.+...|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 788999999999999999998753 33 4578889999999999999999999988742 336788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 477 VLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 477 ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
+..+|...|++++|.+.+++..+..+.
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999886544
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=5.2e-18 Score=173.19 Aligned_cols=339 Identities=12% Similarity=-0.040 Sum_probs=277.1
Q ss_pred CCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCc--------
Q 047221 158 LSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVC-------- 227 (509)
Q Consensus 158 ~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-------- 227 (509)
|+...+..+...+...|+ +|++.|+.+....|+ +..+|..+..++.+.|++++|...|+++...+-.
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 113 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD---YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHH
Confidence 688888888888888886 899999999767775 4568999999999999999999999998765421
Q ss_pred ---------------------------------------------------------------------cC-HHHHHHHH
Q 047221 228 ---------------------------------------------------------------------LN-EKAFGFLP 237 (509)
Q Consensus 228 ---------------------------------------------------------------------p~-~~~~~~ll 237 (509)
|+ ...+....
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (514)
T 2gw1_A 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG 193 (514)
T ss_dssp HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence 11 11111111
Q ss_pred HHHHh--ccCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCHHHH
Q 047221 238 VLISS--KALTKKGIWRVVEVLNQ-----VGG--------SCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERKVSYY 299 (509)
Q Consensus 238 ~~~~~--~~~~~~~a~~~~~~m~~-----~g~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~ 299 (509)
..++. ..|++++|..+++.+.+ ... +.+..++..+...|...|++++|...|+++ .|+...|
T Consensus 194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 273 (514)
T 2gw1_A 194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY 273 (514)
T ss_dssp HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHH
Confidence 11222 25679999999999987 311 234567889999999999999999999986 4458889
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047221 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRV 379 (509)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 379 (509)
..+...|...|++++|.+.++++.+.. +.+..++..+...|...|++++|...+++..+.. +.+...+..+...|.+.
T Consensus 274 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 274 IYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHc
Confidence 999999999999999999999998764 4567889999999999999999999999998863 33577888999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---CCC
Q 047221 380 GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKS-SS----NMLYSLLASLHDK---NNN 451 (509)
Q Consensus 380 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~---~g~ 451 (509)
|++++|...++++.+.. +.+..++..+...|.+.|++++|...++++.+.... ++ ...|..+...+.. .|+
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 430 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN 430 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC
Confidence 99999999999998763 335678999999999999999999999988764221 12 3478889999999 999
Q ss_pred hHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 452 PVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 452 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
+++|.+.++++.+.. +.+..++..+...|.+.|++++|.+.+++..+..+.
T Consensus 431 ~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 431 FIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 999999999998752 335678889999999999999999999999876653
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=9.1e-17 Score=155.60 Aligned_cols=301 Identities=11% Similarity=-0.032 Sum_probs=215.2
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047221 195 SDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIE 274 (509)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~ 274 (509)
+..|..+...+.+.|++++|...|+++.+... .+...+..+.. ++...|++++|...++.+.+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRAT-VFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 44677777788888888888888888766431 23445555555 3444455888888888877654 335677788888
Q ss_pred HHHhcCCHHHHHHHHHHc---CC----CHHHHHHH------------HHHHHhcCCccHHHHHHHHHHHcCCCCChHHHH
Q 047221 275 MFSVLGLYEMAKYVIKKT---ER----KVSYYNIL------------IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYN 335 (509)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m---~~----~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 335 (509)
+|...|++++|...|++. .| +...+..+ ...+...|++++|++.|+++.+.. +.+...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 888888888888888775 33 34444444 577788888888888888887664 45667778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH----------
Q 047221 336 YVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHA---------- 405 (509)
Q Consensus 336 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~---------- 405 (509)
.+...|...|++++|...+++..+. .+.+..++..+...|...|++++|...+++..+.. +.+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 8888888888888888888888776 24467778888888888888888888888877653 22333332
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 047221 406 --AFIKGYFIFYRYEDAYKYVVLSADKYKSSSN----MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLK 479 (509)
Q Consensus 406 --~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 479 (509)
.+...+.+.|++++|...++++.+.... +. ..|..+...+...|++++|++.+++..+. .+.+..++..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence 2355677888888888888887765422 22 23455677888888888888888888774 2236677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 480 HLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 480 ~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
.+.+.|++++|.+.+++..+..+.
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Confidence 888888888888888888876543
No 11
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=194.97 Aligned_cols=119 Identities=15% Similarity=0.035 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHH---cCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047221 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQ---VGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIF 372 (509)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 372 (509)
..+||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++|++.|++++|.++|++|.+.|+.||++|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 56788888888888888888888877653 477888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047221 373 IVYSCRVGKF-DVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF 414 (509)
Q Consensus 373 i~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 414 (509)
|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 8888888764 67778888888888888888888887766554
No 12
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.81 E-value=2.9e-20 Score=193.49 Aligned_cols=136 Identities=14% Similarity=0.043 Sum_probs=99.0
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 047221 330 ITLTYNYVLGVLCKNGQDADACELLEEMLG---RNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAA 406 (509)
Q Consensus 330 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 406 (509)
-..||++||++|++.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 356788888888888888888888877653 36778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcC
Q 047221 407 FIKGYFIFYR-YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN 470 (509)
Q Consensus 407 li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 470 (509)
||+++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++..+++ ..++.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~ 265 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLP 265 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCC
Confidence 8888888776 467778888888888888888888777655553 344444444 3345543
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=3.9e-17 Score=166.65 Aligned_cols=329 Identities=10% Similarity=-0.017 Sum_probs=263.0
Q ss_pred HHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHH
Q 047221 163 VIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLI 240 (509)
Q Consensus 163 ~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~ 240 (509)
+...-..+...|+ +|++.|+.+....|+.. +|..+..++.+.|++++|...++++.+.+ +.+...+..+.. +
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~-~ 82 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPV----FYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS-A 82 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH-H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHH----HHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH-H
Confidence 3344445556665 89999999966667644 99999999999999999999999998764 224456666666 4
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCC--------------------------------------------------------
Q 047221 241 SSKALTKKGIWRVVEVLNQVGGSC-------------------------------------------------------- 264 (509)
Q Consensus 241 ~~~~~~~~~a~~~~~~m~~~g~~~-------------------------------------------------------- 264 (509)
+...|++++|...|+.+.+.+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 445566999999999987755211
Q ss_pred ----------------------CHHHHHHHHHHHHh---cCCHHHHHHHHHHc-C-----------------CCHHHHHH
Q 047221 265 ----------------------LVSGVRALIEMFSV---LGLYEMAKYVIKKT-E-----------------RKVSYYNI 301 (509)
Q Consensus 265 ----------------------~~~~~~~li~~~~~---~g~~~~A~~~~~~m-~-----------------~~~~~~~~ 301 (509)
+...+..+...+.. .|++++|..+|+++ . .+..+|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 12333334444443 89999999999874 2 13567889
Q ss_pred HHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047221 302 LIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK 381 (509)
Q Consensus 302 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 381 (509)
+...+...|++++|...|+++.+.. |+..++..+...|...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999875 448889999999999999999999999998863 3467789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 047221 382 FDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 461 (509)
+++|...++++.+.. +.+...+..+...|...|++++|...++++.+... .+...|..+...|...|++++|++.+++
T Consensus 320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998874 33577899999999999999999999999887532 3456788899999999999999999999
Q ss_pred HHHCCC-CcC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCC
Q 047221 462 MMKNGL-RPN----VSVYRRVLKHLHT---SHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 462 m~~~g~-~p~----~~t~~~ll~~~~~---~g~~~~a~~~~~~m~~~~~ 502 (509)
+.+..- .++ ...+..+...+.. .|++++|.+.+++..+..+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 876321 111 3478889999999 9999999999999887654
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.78 E-value=5.8e-16 Score=159.06 Aligned_cols=336 Identities=11% Similarity=-0.045 Sum_probs=256.3
Q ss_pred CCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHH---
Q 047221 158 LSNASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKA--- 232 (509)
Q Consensus 158 ~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~--- 232 (509)
-+...+..+-..+...|+ +|++.|+.+....|+ +..+|..+...+...|++++|...|+.+... |+...
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~ 130 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKALLRRASANESLGNFTDAMFDLSVLSLN---GDFDGASI 130 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHC-------------
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CCCChHHH
Confidence 356677777777777775 799999998666775 4568888999999999999999999644222 22110
Q ss_pred ------------------------------------------------------------------HHHHHHHHH-----
Q 047221 233 ------------------------------------------------------------------FGFLPVLIS----- 241 (509)
Q Consensus 233 ------------------------------------------------------------------~~~ll~~~~----- 241 (509)
...+...+.
T Consensus 131 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 210 (537)
T 3fp2_A 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEG 210 (537)
T ss_dssp -CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhh
Confidence 011111000
Q ss_pred --hccCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCHHHHHHHHHHHHhcC
Q 047221 242 --SKALTKKGIWRVVEVLNQVGGSCL------VSGVRALIEMFSVLGLYEMAKYVIKKT---ERKVSYYNILIKEMCRRC 310 (509)
Q Consensus 242 --~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~li~~~~~~g 310 (509)
...+++++|..+++.+.+...... ..++..+...+...|++++|...|++. .|+..+|..+...|...|
T Consensus 211 ~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 290 (537)
T 3fp2_A 211 YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKE 290 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Confidence 011247788888888876442211 235677788899999999999999986 566888999999999999
Q ss_pred CccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 047221 311 DFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFN 390 (509)
Q Consensus 311 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 390 (509)
++++|.+.|+++.+.. +.+..+|..+...|...|++++|...+++..+.. +.+...+..+...|.+.|++++|...++
T Consensus 291 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 368 (537)
T 3fp2_A 291 NSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFN 368 (537)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998765 4567889999999999999999999999998863 3356788899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhC----------CChHHH
Q 047221 391 QMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY-----KSSSNMLYSLLASLHDKN----------NNPVMA 455 (509)
Q Consensus 391 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~a 455 (509)
++.+.. +.+...+..+...|...|++++|...|+++.+.. .......+..+...+... |++++|
T Consensus 369 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 369 ETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 998763 4457788999999999999999999999887542 112223344556677777 999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 456 KNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 456 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
++.|++..+.. +.+...+..+...|.+.|++++|.+.+++..+..+.
T Consensus 448 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 448 IKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99999998752 335678999999999999999999999998876654
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=3.5e-16 Score=149.79 Aligned_cols=285 Identities=10% Similarity=0.017 Sum_probs=231.3
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047221 196 DICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEM 275 (509)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 275 (509)
..+..+...+...|++++|.++|+++..... .+...+..+...+ ...++.++|..+++.+.+.. +.+...+..+...
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTL-VELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHH-HHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHH-HHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 3788888899999999999999999876542 2333444455534 44556999999999998764 4467788899999
Q ss_pred HHhcC-CHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHH
Q 047221 276 FSVLG-LYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350 (509)
Q Consensus 276 ~~~~g-~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 350 (509)
|...| ++++|...|++. +.+...|..+...|...|++++|++.|++..+.. +.+...+..+...|...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 99999 999999999985 4567889999999999999999999999998764 34567788899999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047221 351 CELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG--------LQPRLATHAAFIKGYFIFYRYEDAYK 422 (509)
Q Consensus 351 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~A~~ 422 (509)
.+.+++..+.. +.+...+..+...+.+.|++++|...++++.+.. ...+..++..+..+|.+.|++++|..
T Consensus 179 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 257 (330)
T 3hym_B 179 ERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 257 (330)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998863 4467889999999999999999999999987641 13346789999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc-CHHHHHHHHHHH-HhcCCHH
Q 047221 423 YVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP-NVSVYRRVLKHL-HTSHQEH 488 (509)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~-~~~g~~~ 488 (509)
.+++..+... .+...|..+...|.+.|++++|.+.+++..+. .| +...+..+..++ ...|+.+
T Consensus 258 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 258 YHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCchh
Confidence 9999887642 35677888999999999999999999998764 45 566777777777 4555544
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=3.8e-15 Score=144.08 Aligned_cols=309 Identities=9% Similarity=-0.083 Sum_probs=243.7
Q ss_pred HHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCcc-CHHHHHHHH
Q 047221 161 ASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCL-NEKAFGFLP 237 (509)
Q Consensus 161 ~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p-~~~~~~~ll 237 (509)
..+..+-..+...|+ +|++.|+.+....|+ +..+|..+...+...|++++|...|+++.+.. | +...+..+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 78 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHH
Confidence 344555566666775 899999999666774 45689999999999999999999999997653 4 445666666
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHc----CCCHHHH
Q 047221 238 VLISSKALTKKGIWRVVEVLNQVGGS--CLVSGVRAL------------IEMFSVLGLYEMAKYVIKKT----ERKVSYY 299 (509)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m----~~~~~~~ 299 (509)
. ++...|++++|...++...+.... .+...+..+ ...+...|++++|...++++ +.+...+
T Consensus 79 ~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 157 (359)
T 3ieg_A 79 H-LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELR 157 (359)
T ss_dssp H-HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred H-HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 6 444556699999999999876420 234444444 58899999999999999986 5678999
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH---------
Q 047221 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYE--------- 370 (509)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--------- 370 (509)
..+...|...|++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHH
Confidence 999999999999999999999999764 5578899999999999999999999999998762 22333333
Q ss_pred ---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047221 371 ---IFIVYSCRVGKFDVAFNFFNQMVKRGLQPRL----ATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLA 443 (509)
Q Consensus 371 ---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 443 (509)
.+...+.+.|++++|...++++.+.... +. ..+..+..+|.+.|++++|...+++..+.. ..+..+|..+.
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 313 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA 313 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 2356688999999999999999876422 33 235567889999999999999999998763 33678899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCcC-HHHHHHHHHHH
Q 047221 444 SLHDKNNNPVMAKNVLSEMMKNGLRPN-VSVYRRVLKHL 481 (509)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~ 481 (509)
..|...|++++|.+.|++..+. .|+ ...+..+..+.
T Consensus 314 ~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 314 EAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 9999999999999999999974 455 44455554444
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.77 E-value=4.3e-16 Score=149.15 Aligned_cols=271 Identities=11% Similarity=-0.075 Sum_probs=226.2
Q ss_pred ccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHH
Q 047221 227 CLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNIL 302 (509)
Q Consensus 227 ~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~l 302 (509)
..+...+......+... |++++|..+++.+.+.. +.+...+..++..+...|++++|..+++++ +.+...|..+
T Consensus 19 ~~~~~~~~~~a~~~~~~-g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYN-CDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34555566666645555 66999999999998765 344556777888999999999999999886 4578899999
Q ss_pred HHHHHhcC-CccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047221 303 IKEMCRRC-DFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK 381 (509)
Q Consensus 303 i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 381 (509)
...+...| ++++|.+.|++..+.. +.+...|..+...|...|++++|.+.+++..+.. +.+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999998764 4467889999999999999999999999998863 2345677778999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhCCChH
Q 047221 382 FDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY--------KSSSNMLYSLLASLHDKNNNPV 453 (509)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~~ 453 (509)
+++|...++++.+.. +.+...+..+...|...|++++|...+++..+.. ...+..+|..+...|...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999998764 4468899999999999999999999999887642 1334578899999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 454 MAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 454 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
+|++.+++..+.. +.+...+..+...+.+.|++++|.+.+++..+..+.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 9999999998753 235678899999999999999999999998876543
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=2.8e-16 Score=153.15 Aligned_cols=285 Identities=10% Similarity=-0.055 Sum_probs=207.0
Q ss_pred ccCCHHHHHH-HHHHhhhCCC-cc--CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047221 207 RLDDYETMRQ-LLNDFNVYQV-CL--NEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLY 282 (509)
Q Consensus 207 ~~g~~~~A~~-l~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (509)
..|++++|.+ .|++...... .| +...+..+...+. ..|++++|...++.+.+.. +.+..++..+..+|.+.|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRL-QEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHH-HTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 3467777777 6665533211 11 2334444444333 4445888888888887754 44667788888888888888
Q ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHH---------------HHHHHHh
Q 047221 283 EMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNY---------------VLGVLCK 343 (509)
Q Consensus 283 ~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---------------li~~~~~ 343 (509)
++|...|++. +.+..+|..+...|...|++++|++.|+++.+.. +.+...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 8888888875 4577888888888888999999999988888754 222222211 2334448
Q ss_pred cCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047221 344 NGQDADACELLEEMLGRNCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYK 422 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 422 (509)
.|++++|...|+++.+..... +..++..+...|.+.|++++|...++++.+.. +.+..++..+...|.+.|++++|..
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 899999999999998763221 57889999999999999999999999988763 3467889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCC----------cCHHHHHHHHHHHHhcCCHHHHHH
Q 047221 423 YVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLR----------PNVSVYRRVLKHLHTSHQEHMAKC 492 (509)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----------p~~~t~~~ll~~~~~~g~~~~a~~ 492 (509)
.|+++.+.. ..+...|..+...|.+.|++++|.+.|+++.+..-. ....+|..+..+|...|++++|..
T Consensus 273 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 273 AYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987753 345778899999999999999999999998763111 125789999999999999999998
Q ss_pred HHHH
Q 047221 493 LSSR 496 (509)
Q Consensus 493 ~~~~ 496 (509)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=4.7e-17 Score=157.58 Aligned_cols=277 Identities=8% Similarity=-0.040 Sum_probs=136.7
Q ss_pred chHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHH
Q 047221 175 VSALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVV 254 (509)
Q Consensus 175 ~~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~ 254 (509)
++|.++++.+ +... +|..|+.++.+.|++++|++.|.+. +|..+|..++.. +...|++++|+.++
T Consensus 20 d~A~~fae~~----~~~~----vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~-ae~~g~~EeAi~yl 84 (449)
T 1b89_A 20 DRAYEFAERC----NEPA----VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQA-ANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC----CChH----HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHH-HHhCCCHHHHHHHH
Confidence 3699999998 3333 9999999999999999999999764 577899999984 45567799999988
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHH
Q 047221 255 EVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY 334 (509)
Q Consensus 255 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 334 (509)
+...+. .++..+.+.|+.+|.+.|++++++++++. |+..+|+.+...|...|++++|...|..+ ..|
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp --------------------------CHHHHTTTTTC--C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 877763 45578889999999999999999988874 77789999999999999999999999977 479
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047221 335 NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF 414 (509)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 414 (509)
..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+ ..+..-...++..|.+.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDR 220 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHC
Confidence 99999999999999999999988 27899999999999999999996655542 23444455799999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--CChHHHHHHHHHHHHCCCCc------CHHHHHHHHHHHHhcCC
Q 047221 415 YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKN--NNPVMAKNVLSEMMKNGLRP------NVSVYRRVLKHLHTSHQ 486 (509)
Q Consensus 415 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p------~~~t~~~ll~~~~~~g~ 486 (509)
|++++|..+++...... .-....|+-|..+|++- ++..+.+++|.. ..++.| +...|.-+.-.|.+.++
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 99999999999887665 55677888888888865 344455554432 123333 44578888888889999
Q ss_pred HHHHHHH
Q 047221 487 EHMAKCL 493 (509)
Q Consensus 487 ~~~a~~~ 493 (509)
++.|...
T Consensus 298 ~d~A~~t 304 (449)
T 1b89_A 298 YDNAIIT 304 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.73 E-value=6.9e-16 Score=150.46 Aligned_cols=245 Identities=10% Similarity=-0.097 Sum_probs=176.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 047221 247 KKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEM 322 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (509)
+++|..+++.+.+.. +.+..++..+..+|.+.|++++|...|++. +.+..+|..+...|...|++++|++.|+++
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 81 LPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNW 159 (365)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHH
Confidence 444444444443332 234556677777777777777777777764 445777777788888888888888888777
Q ss_pred HHcCCCCC-----------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 047221 323 RQVGCEPI-----------TLTYNYVLGVLCKNGQDADACELLEEMLGRNCH-PDAITYEIFIVYSCRVGKFDVAFNFFN 390 (509)
Q Consensus 323 ~~~g~~p~-----------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~ 390 (509)
.+.. |+ ...+..+...|...|++++|.++++++.+.... .+..++..+...|.+.|++++|...|+
T Consensus 160 l~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 237 (365)
T 4eqf_A 160 IKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237 (365)
T ss_dssp HHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7542 21 233445577888899999999999998886322 157888899999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC---C
Q 047221 391 QMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNG---L 467 (509)
Q Consensus 391 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~ 467 (509)
++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. ..+..+|..+...|.+.|++++|.+.|+++.+.. .
T Consensus 238 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 238 AALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 988763 4468889999999999999999999999888763 2347788899999999999999999999987631 0
Q ss_pred C--------cCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047221 468 R--------PNVSVYRRVLKHLHTSHQEHMAKCLSSR 496 (509)
Q Consensus 468 ~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 496 (509)
. .+...|..+..++...|+.+.+..+.++
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 316 NQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp -----------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 1 1357889999999999999998887654
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.71 E-value=8.6e-15 Score=150.25 Aligned_cols=324 Identities=15% Similarity=0.047 Sum_probs=237.1
Q ss_pred HHHHHHHHHHhcCCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHH
Q 047221 161 ASVIEILRVLNSEKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPV 238 (509)
Q Consensus 161 ~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~ 238 (509)
..+...-..+.+.|+ +|++.|+.+....|+ +..+|..+..+|.+.|++++|.+.|+++.+.. +.+...+..+..
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 444555555666664 899999999777774 55689999999999999999999999987764 124455555555
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC-----------CCHH----------
Q 047221 239 LISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTE-----------RKVS---------- 297 (509)
Q Consensus 239 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------~~~~---------- 297 (509)
+....|++++|...++.+.. .|+. ....+..+...+....|...++++- ++..
T Consensus 102 -~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 102 -ANESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp -HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred -HHHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 44555669999999964322 2221 1223444555555666777666641 1111
Q ss_pred --------------------HHHHHHHHHHh--------cCCccHHHHHHHHHHHcCCCCC--------hHHHHHHHHHH
Q 047221 298 --------------------YYNILIKEMCR--------RCDFKGPRDLLVEMRQVGCEPI--------TLTYNYVLGVL 341 (509)
Q Consensus 298 --------------------~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~--------~~t~~~li~~~ 341 (509)
.+..+...+.. .|++++|..+|+++.+. .|+ ..++..+...+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHH
Confidence 22222222221 24788999999998865 344 33567777888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047221 342 CKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 421 (509)
...|++++|...+++..+. .|+...+..+...|...|++++|...++++.+.. +.+..++..+...|...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 8999999999999999886 4667888889999999999999999999998764 346888999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 422 KYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
..|+++.+... .+...|..+...|...|++++|+++++++.+.. +.+...+..+...+...|++++|.+.+++..+..
T Consensus 331 ~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999887643 245678889999999999999999999998852 3356688889999999999999999999987654
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.70 E-value=5.1e-15 Score=144.18 Aligned_cols=282 Identities=8% Similarity=-0.057 Sum_probs=222.0
Q ss_pred hHHH-HHHHhhccCCCCc-cChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHH
Q 047221 176 SALC-FLKYMREIMPEFY-KNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRV 253 (509)
Q Consensus 176 ~A~~-~~~~~~~~~p~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~ 253 (509)
.|++ .|+......|+.. .+...|..+...+.+.|++++|...|+++.+.. +.+...+..+.. +....|++++|...
T Consensus 43 ~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~-~~~~~g~~~~A~~~ 120 (368)
T 1fch_A 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGT-TQAENEQELLAISA 120 (368)
T ss_dssp ---CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHH-HHHHTTCHHHHHHH
T ss_pred HHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH-HHHHCcCHHHHHHH
Confidence 5666 6665534444321 234578899999999999999999999998764 234556666666 45556669999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHH---------------HHHHHHhcCCccH
Q 047221 254 VEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNI---------------LIKEMCRRCDFKG 314 (509)
Q Consensus 254 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~---------------li~~~~~~g~~~~ 314 (509)
++.+.+.. +.+..++..+..+|...|++++|...|+++ +.+...+.. .+..+...|++++
T Consensus 121 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (368)
T 1fch_A 121 LRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 199 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHH
Confidence 99998875 457888999999999999999999999986 223333221 2344448999999
Q ss_pred HHHHHHHHHHcCCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 315 PRDLLVEMRQVGCE-PITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 315 A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
|.+.|+++.+..-. ++..++..+...|.+.|++++|...++++.+.. +.+...|..+...|.+.|++++|...|+++.
T Consensus 200 A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 278 (368)
T 1fch_A 200 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRAL 278 (368)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999876421 157899999999999999999999999988762 3467899999999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 047221 394 KRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSS----------SNMLYSLLASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 394 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~a~~~~~~m 462 (509)
+.. +.+..++..+..+|.+.|++++|...|+++.+..... ...+|..+..+|...|+.++|..++++.
T Consensus 279 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 279 ELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 763 4467899999999999999999999999887642211 2678999999999999999999988743
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=3.2e-15 Score=142.79 Aligned_cols=264 Identities=9% Similarity=-0.079 Sum_probs=143.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047221 196 DICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEM 275 (509)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~ 275 (509)
..|..+...+.+.|++++|..+|+++.+... -+...+..+.. ++...|++++|...++.+.+.. +.+..++..+...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGL-TQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3566666677777777777777777655321 13333333333 2223333555555555555432 2234444455555
Q ss_pred HHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHH--------------HH-H
Q 047221 276 FSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYV--------------LG-V 340 (509)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--------------i~-~ 340 (509)
|...|++++|...+++ +.+.. +.+...+..+ .. .
T Consensus 99 ~~~~~~~~~A~~~~~~------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (327)
T 3cv0_A 99 HTNEHNANAALASLRA------------------------------WLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFF 147 (327)
T ss_dssp HHHTTCHHHHHHHHHH------------------------------HHHTS-TTTTTC--------------------CC
T ss_pred HHHcCCHHHHHHHHHH------------------------------HHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHH
Confidence 5555555555555544 44321 1111111111 11 2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047221 341 LCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDA 420 (509)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 420 (509)
+...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|...++++.+.. +.+..++..+...|...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 555566666666666665542 2245566666666666666666666666665542 23455666666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc-----------CHHHHHHHHHHHHhcCCHHH
Q 047221 421 YKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP-----------NVSVYRRVLKHLHTSHQEHM 489 (509)
Q Consensus 421 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~t~~~ll~~~~~~g~~~~ 489 (509)
...|+++.+.. ..+...|..+...|...|++++|.+.++++.+..-.. +...+..+..++.+.|++++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 66666665542 2245566666666667777777777776665521110 24566666667777777777
Q ss_pred HHHHHHH
Q 047221 490 AKCLSSR 496 (509)
Q Consensus 490 a~~~~~~ 496 (509)
|..++++
T Consensus 305 A~~~~~~ 311 (327)
T 3cv0_A 305 VELTYAQ 311 (327)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 7666653
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=4.8e-15 Score=139.64 Aligned_cols=269 Identities=12% Similarity=0.048 Sum_probs=182.7
Q ss_pred HHHHhccCCHHHHHHHHHHhhhCCCccCH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 047221 202 IDNCGRLDDYETMRQLLNDFNVYQVCLNE--KAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVL 279 (509)
Q Consensus 202 i~~~~~~g~~~~A~~l~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (509)
|+.....|++..|+..++.... ..|+. .....+..++...+ +.+.|...++. ..+|+..++..+...|...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g-~~~~al~~~~~----~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQR-KYGVVLDEIKP----SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTT-CHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCC-CHHHHHHHhcc----cCChhHHHHHHHHHHHcCC
Confidence 3445567888888888877633 33443 23344445444444 47777765543 2455667778888888888
Q ss_pred CCHHHHHHHHHHc------CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 047221 280 GLYEMAKYVIKKT------ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACEL 353 (509)
Q Consensus 280 g~~~~A~~~~~~m------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 353 (509)
|+.++|.+.++++ +.+...+..+...|.+.|++++|++.+++ ..+...+..+...|.+.|++++|.+.
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8888888888774 23566677777888888888888888876 45677778888888888888888888
Q ss_pred HHHHHhCCCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 354 LEEMLGRNCHPDAITY---EIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 354 ~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
|+++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|...|++..+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88887763 443211 12233344457888888888888876 3557778888888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 047221 431 YKSSSNMLYSLLASLHDKNNNPVM-AKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKC 492 (509)
Q Consensus 431 ~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 492 (509)
. +-+..++..++..+...|+.++ +.++++++.+ +.|+.... .+...+.+.++++..
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~---~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFI---KEYRAKENDFDRLVL 286 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHH---HHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHH---HHHHHHHHHHHHHHH
Confidence 3 2356677778888888888765 5678887776 44554432 334455555555544
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.70 E-value=6.9e-15 Score=140.49 Aligned_cols=232 Identities=10% Similarity=-0.020 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 047221 267 SGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLC 342 (509)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 342 (509)
..+..+...+...|++++|..+|+++ +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34567778888899999999998886 5678889999999999999999999999998764 457788999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047221 343 KNGQDADACELLEEMLGRNCHPDAITYEIF--------------IV-YSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAF 407 (509)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 407 (509)
..|++++|.+.++++.+... .+...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 99999999999999987632 122223222 22 3778899999999999998764 3478899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 047221 408 IKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQE 487 (509)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 487 (509)
...|...|++++|.+.++++.+.. ..+..+|..+...+...|++++|++.++++.+.. +.+...+..+...+.+.|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence 999999999999999999988764 3357789999999999999999999999998752 33577899999999999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 047221 488 HMAKCLSSRYSSLSLG 503 (509)
Q Consensus 488 ~~a~~~~~~m~~~~~~ 503 (509)
++|.+.+++..+..+.
T Consensus 257 ~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999998876544
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=2.2e-15 Score=146.92 Aligned_cols=263 Identities=9% Similarity=-0.010 Sum_probs=209.8
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047221 194 NSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALI 273 (509)
Q Consensus 194 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li 273 (509)
+...|..+...+.+.|++++|..+|+++.... +.+...+..+...+. ..|++++|...++.+.+.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQA-ENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 44578999999999999999999999997764 235666776666444 5566999999999998865 45678899999
Q ss_pred HHHHhcCCHHHHHHHHHHc---CCC-----------HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCC-CChHHHHHHH
Q 047221 274 EMFSVLGLYEMAKYVIKKT---ERK-----------VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCE-PITLTYNYVL 338 (509)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m---~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li 338 (509)
.+|...|++++|...|+++ .|+ ...+..+...|.+.|++++|++.|+++.+..-. .+..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999886 221 233445688999999999999999999987421 2688999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 047221 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418 (509)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 418 (509)
..|...|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..++..+..+|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998862 4468899999999999999999999999998763 335889999999999999999
Q ss_pred HHHHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 047221 419 DAYKYVVLSADKYKS-----------SSNMLYSLLASLHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 419 ~A~~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 461 (509)
+|...|+++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999988764211 1356899999999999999998887765
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=4e-14 Score=133.31 Aligned_cols=243 Identities=8% Similarity=0.042 Sum_probs=153.4
Q ss_pred hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHH
Q 047221 176 SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVE 255 (509)
Q Consensus 176 ~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~ 255 (509)
.|+..++......|+. .....-.+.++|...|+++.|+..++.. -.|+..++..+.. ++...++.++|.+.++
T Consensus 17 ~ai~~~~~~~~~~p~~--~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~-~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 17 QCINEAQRVKPSSPER--DVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAE-YLASHSRRDAIVAELD 89 (291)
T ss_dssp HHHHHHHHSCCCSHHH--HHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHH-HHHCSTTHHHHHHHHH
T ss_pred HHHHHHHhcccCCchh--hHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHH-HHcCCCcHHHHHHHHH
Confidence 5666665553333331 1224455667777777777777655431 2344555555555 4445555777777777
Q ss_pred HHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHH
Q 047221 256 VLNQVGG-SCLVSGVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTY 334 (509)
Q Consensus 256 ~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 334 (509)
++...+. +-+...+..+..+|...|++++|.+.+++ +.+...+..++..|.+.|++++|.+.|+++.+.. |+....
T Consensus 90 ~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~ 166 (291)
T 3mkr_A 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLT 166 (291)
T ss_dssp HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHH
Confidence 7776653 33455566666777777777777777777 5667777777777777777777777777777653 443211
Q ss_pred ---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047221 335 ---NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411 (509)
Q Consensus 335 ---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (509)
...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|+..|++..+.. +-+..++..++..+
T Consensus 167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~ 244 (291)
T 3mkr_A 167 QLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLS 244 (291)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 11223333447777777777777765 34566777777777777777777777777766652 33566777777777
Q ss_pred HHcCCHHH-HHHHHHHHHhC
Q 047221 412 FIFYRYED-AYKYVVLSADK 430 (509)
Q Consensus 412 ~~~g~~~~-A~~~~~~m~~~ 430 (509)
...|+.++ +.++++++.+.
T Consensus 245 ~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 245 QHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHh
Confidence 77777654 45677766654
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.63 E-value=4.9e-16 Score=150.50 Aligned_cols=254 Identities=9% Similarity=-0.011 Sum_probs=103.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMF 276 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (509)
+-+.||. +.|++++|.+.++++ ++..+|..+..+++.. +++++|.+.|.. .+|..+|..++..+
T Consensus 8 a~~~ll~---~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~-g~~~eAIdsfik------a~D~~~y~~V~~~a 71 (449)
T 1b89_A 8 AVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQK-GMVKEAIDSYIK------ADDPSSYMEVVQAA 71 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HccCHHHHHHHHHhC------CChHHHHHHHHHHHHc-CCHHHHHHHHHc------CCCHHHHHHHHHHH
Confidence 4444443 667788888888887 4556888888855544 448888888864 25677888888889
Q ss_pred HhcCCHHHHHHHHHHcC---CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 047221 277 SVLGLYEMAKYVIKKTE---RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACEL 353 (509)
Q Consensus 277 ~~~g~~~~A~~~~~~m~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 353 (509)
...|++++|+..++... ++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...
T Consensus 72 e~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 72 NTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88999999998776653 445778888999999999988888874 37777999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 047221 354 LEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKS 433 (509)
Q Consensus 354 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 433 (509)
|..+ ..|..+..++.+.|++++|.+.++++ + ++.+|..++.+|...|+++.|...... +.
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA---~---~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~ 204 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEVCFACVDGKEFRLAQMCGLH-----IV 204 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TT
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc---C---CchhHHHHHHHHHHcCcHHHHHHHHHH-----HH
Confidence 9866 36888899999999999999998887 2 788899999999999999998555433 22
Q ss_pred CCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhc--CCHHHHHHHH
Q 047221 434 SSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTS--HQEHMAKCLS 494 (509)
Q Consensus 434 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--g~~~~a~~~~ 494 (509)
....-...++..|.+.|++++|+.+++...... .-....|+-+-.+|++- |+..+.+++|
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 333334568888899999999999998887543 34456677776666654 3344444433
No 29
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=2.7e-11 Score=122.97 Aligned_cols=318 Identities=9% Similarity=-0.064 Sum_probs=248.1
Q ss_pred HHHHHHHHHHHhc----CCc--hHHHHHHHhhccCCCCccChhHHHHHHHHHhc----cCCHHHHHHHHHHhhhCCCccC
Q 047221 160 NASVIEILRVLNS----EKV--SALCFLKYMREIMPEFYKNSDICSLVIDNCGR----LDDYETMRQLLNDFNVYQVCLN 229 (509)
Q Consensus 160 ~~~~~~ll~~~~~----~~~--~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~ 229 (509)
...+..+=..+.. .++ +|++.|+..... .+...+..|...|.. .+++++|.+.|++..+.| +
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 146 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---R 146 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 4444444444443 333 688888887321 134477778888877 788999999999988776 4
Q ss_pred HHHHHHHHHHHHh---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHc--CCCHHHHH
Q 047221 230 EKAFGFLPVLISS---KALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSV----LGLYEMAKYVIKKT--ERKVSYYN 300 (509)
Q Consensus 230 ~~~~~~ll~~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m--~~~~~~~~ 300 (509)
...+..+-..+.. ..++.++|...|+...+.| +...+..|..+|.. .++.++|.+.|++. ..+..++.
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~ 223 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQL 223 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHH
Confidence 5555555554443 1456899999999888764 67788888888888 78999999999886 46777888
Q ss_pred HHHHHHHh----cCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047221 301 ILIKEMCR----RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK----NGQDADACELLEEMLGRNCHPDAITYEIF 372 (509)
Q Consensus 301 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 372 (509)
.+...|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.+.|+...+.| +...+..+
T Consensus 224 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~L 297 (490)
T 2xm6_A 224 HLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYL 297 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Confidence 88888886 788999999999888764 45667777777777 889999999999988765 56677778
Q ss_pred HHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047221 373 IVYSCRV-----GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY---RYEDAYKYVVLSADKYKSSSNMLYSLLAS 444 (509)
Q Consensus 373 i~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 444 (509)
-..|... ++.++|...|++..+.| +...+..|...|...| +.++|.++|++..+.+ +...+..|..
T Consensus 298 g~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~ 371 (490)
T 2xm6_A 298 AHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGN 371 (490)
T ss_dssp HHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 7888877 89999999999998876 6677888888888766 7889999999988875 6778888899
Q ss_pred HHHh----CCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 047221 445 LHDK----NNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHT----SHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 445 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~ 503 (509)
.|.. .++.++|++.|++..+.| +...+..|-..|.+ .++.++|...+++..+.+..
T Consensus 372 ~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 372 ALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 8988 899999999999998876 46677788888887 89999999999998887643
No 30
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.63 E-value=1.7e-11 Score=124.48 Aligned_cols=283 Identities=12% Similarity=0.001 Sum_probs=138.3
Q ss_pred HHHHHHHHHhc----cCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhc---cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047221 197 ICSLVIDNCGR----LDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSK---ALTKKGIWRVVEVLNQVGGSCLVSGV 269 (509)
Q Consensus 197 ~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~~ 269 (509)
.+..|-..|.. .+++++|.+.|++..+.| +...+..+-..+... .++.++|...++...+.| +...+
T Consensus 77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 150 (490)
T 2xm6_A 77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQ 150 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44455555554 555555555555554443 233333333322220 223555555555555443 33444
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHcCCCCChHHHHHHHH
Q 047221 270 RALIEMFSV----LGLYEMAKYVIKKT--ERKVSYYNILIKEMCR----RCDFKGPRDLLVEMRQVGCEPITLTYNYVLG 339 (509)
Q Consensus 270 ~~li~~~~~----~g~~~~A~~~~~~m--~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 339 (509)
..|..+|.. .+++++|.+.|++. ..+..++..+...|.+ .++.++|++.|++..+.| +...+..+..
T Consensus 151 ~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 227 (490)
T 2xm6_A 151 QSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLAD 227 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 455555554 44555555555543 2344555555555554 455555555555555433 3344444444
Q ss_pred HHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047221 340 VLCK----NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR----VGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411 (509)
Q Consensus 340 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (509)
.|.. .+++++|.+.|++..+.| +...+..+-..|.. .++.++|...|++..+.| +...+..|...|
T Consensus 228 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 301 (490)
T 2xm6_A 228 MYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLY 301 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Confidence 4443 455555555555555443 33344444444444 455555555555555443 344444455555
Q ss_pred HHc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh
Q 047221 412 FIF-----YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNN---NPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHT 483 (509)
Q Consensus 412 ~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 483 (509)
... ++.++|...|++..+.+ +...+..+...|...| +.++|+++|++..+.| +...+..+-..|..
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQ 375 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 544 55555555555555443 3334444555554444 4555555555555442 33444444445544
Q ss_pred ----cCCHHHHHHHHHHHHhC
Q 047221 484 ----SHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 484 ----~g~~~~a~~~~~~m~~~ 500 (509)
.+++++|.+.+++..+.
T Consensus 376 g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 376 GKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHhC
Confidence 45555555555555444
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.59 E-value=2.6e-11 Score=124.36 Aligned_cols=182 Identities=9% Similarity=0.020 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047221 314 GPRDLLVEMRQVGCEPITLTYNYVLGVLCK-------NGQDA-------DACELLEEMLGRNCHPDAITYEIFIVYSCRV 379 (509)
Q Consensus 314 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 379 (509)
+|..+|++..... +-+...|......+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3344444444331 2234445555554443 46655 5666666665421223455666666666666
Q ss_pred CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhCCChHHHH
Q 047221 380 GKFDVAFNFFNQMVKRGLQPR--LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLAS-LHDKNNNPVMAK 456 (509)
Q Consensus 380 g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~ 456 (509)
|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+.... +...|...+. .+...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHH
Confidence 6666666666666653 332 235666666666666666666666665554211 1111211111 122456666666
Q ss_pred HHHHHHHHCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 457 NVLSEMMKNGLRP-NVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 457 ~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
++|++..+. .| +...|..++..+.+.|+.++|..+|++....+
T Consensus 412 ~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 412 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 666665552 23 34555666666666666666666666665543
No 32
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=5.7e-12 Score=117.29 Aligned_cols=220 Identities=10% Similarity=-0.092 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh----cCCccHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 047221 267 SGVRALIEMFSVLGLYEMAKYVIKKT--ERKVSYYNILIKEMCR----RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGV 340 (509)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m--~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 340 (509)
.++..+...|...|++++|...|++. +.+..++..+...|.. .+++++|++.|++..+.+ +...+..+...
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 34444555555555555555555543 3334445555555555 555555555555555443 44455555555
Q ss_pred HHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047221 341 LCK----NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR----VGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412 (509)
Q Consensus 341 ~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (509)
|.. .+++++|.+.|++..+.+ +...+..+-..|.+ .+++++|...|++..+.+ +...+..+...|.
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 555 555555555555555543 44455555555555 555555555555555543 3444455555555
Q ss_pred H----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHh-
Q 047221 413 I----FYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDK----NNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHT- 483 (509)
Q Consensus 413 ~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~- 483 (509)
. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|++..+.+. ...+..+...|.+
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNG 231 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcC
Confidence 5 555555555555555443 33444455555555 5555555555555555431 3344444445555
Q ss_pred ---cCCHHHHHHHHHHHHhCC
Q 047221 484 ---SHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 484 ---~g~~~~a~~~~~~m~~~~ 501 (509)
.+++++|.+.+++..+.|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHT
T ss_pred CCcccCHHHHHHHHHHHHHcC
Confidence 555555555555555444
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=3.1e-13 Score=121.46 Aligned_cols=198 Identities=11% Similarity=-0.021 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047221 294 RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFI 373 (509)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 373 (509)
++...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 333444444444444444444544444444332 2234444444444445555555555554444431 12334444444
Q ss_pred HHHHHc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047221 374 VYSCRV-----------GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLL 442 (509)
Q Consensus 374 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 442 (509)
..+.+. |++++|...|++..+.. +-+...+..+..+|...|++++|...|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 444444 66666666666655542 2234555566666666666666666666665554 455556666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047221 443 ASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRY 497 (509)
Q Consensus 443 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 497 (509)
...|...|++++|++.|++..+.. +-+...+..+...+.+.|++++|++.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666665531 123445555566666666666666666554
No 34
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.7e-12 Score=116.46 Aligned_cols=198 Identities=11% Similarity=0.018 Sum_probs=137.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 047221 265 LVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGV 340 (509)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 340 (509)
+...+..+...|...|++++|...|++. +.+...|..+...|...|++++|.+.|++..+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3455667777777777777777777764 4456777777777777777777777777777653 3456677777777
Q ss_pred HHhc-CChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 047221 341 LCKN-GQDADACELLEEMLGRNCHPD-AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418 (509)
Q Consensus 341 ~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 418 (509)
|... |++++|.+.++++.+.+..|+ ...+..+...+.+.|++++|...++++.+.. +.+...+..+..+|.+.|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 7777 777777777777776322333 4566677777777777777777777776653 234666777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 419 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+|...++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777766653323555666666677777777777777777664
No 35
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=1.9e-12 Score=118.81 Aligned_cols=195 Identities=14% Similarity=0.032 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Q 047221 267 SGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLC 342 (509)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 342 (509)
..+..+...|...|++++|...|+++ +.+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 44555555555555555555555553 2345555555555555555555555555555442 224445555555555
Q ss_pred hcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047221 343 KNGQDADACELLEEMLGRNCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 421 (509)
..|++++|.++++++.+.+..| +...+..+...|.+.|++++|...++++.+.. +.+...+..+...|...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 5555555555555555422223 23344555555555555555555555555432 223445555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 422 KYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
..++++.+.. ..+...+..+...+...|+.++|.++++++.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5555554432 12344445555555555555555555555544
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.56 E-value=1.8e-12 Score=118.84 Aligned_cols=204 Identities=12% Similarity=0.025 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047221 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVY 375 (509)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 375 (509)
...|..+...|...|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567778888888888888888888887764 4467778888888888888888888888887753 3367778888888
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 047221 376 SCRVGKFDVAFNFFNQMVKRGLQP-RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVM 454 (509)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 454 (509)
|...|++++|.++++++.+.+..| +...+..+..+|...|++++|.+.|+++.+.. ..+...+..+...|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887733344 45677788888888888888888888877654 2356778888888888888888
Q ss_pred HHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 455 AKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 455 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
|.++++++.+. ...+...+..+...+.+.|++++|.++++++.+..+.
T Consensus 194 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 194 ARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 88888888764 2345667777788888888888888888888776543
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.4e-12 Score=117.13 Aligned_cols=204 Identities=10% Similarity=-0.026 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CC---C----HHHHHHHHHHHHhcCCccHH
Q 047221 247 KKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ER---K----VSYYNILIKEMCRRCDFKGP 315 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~---~----~~~~~~li~~~~~~g~~~~A 315 (509)
+++|...++...+.. .+..++..+..+|...|++++|...+++. +. + ..+|..+...|.+.|++++|
T Consensus 21 ~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 98 (258)
T 3uq3_A 21 FDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKT 98 (258)
T ss_dssp HHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHH
Confidence 555555555554444 44455556666666666666666666553 11 1 45666777777777777777
Q ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047221 316 RDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 316 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
++.|++..+. .|+. ..+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 99 ~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 168 (258)
T 3uq3_A 99 IEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR 168 (258)
T ss_dssp HHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7777777664 3332 33555677777777777776652 223456667777777778888888888777765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 396 GLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 396 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
. +.+..++..+..+|.+.|++++|...|++..+.. ..+...|..+...+.+.|++++|.+.+++..+
T Consensus 169 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 169 A-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3 3356777777778888888888888887776653 23466677777788888888888888877765
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.54 E-value=8.2e-13 Score=118.65 Aligned_cols=196 Identities=12% Similarity=-0.037 Sum_probs=145.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHH
Q 047221 263 SCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338 (509)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 338 (509)
+++...+..+...+.+.|++++|...|++. +.+...|..+...+.+.|++++|+..|++..+.. +-+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 455667778888888888888888888875 4567888888888888888888888888888764 44567778888
Q ss_pred HHHHhc-----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047221 339 GVLCKN-----------GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAF 407 (509)
Q Consensus 339 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 407 (509)
.+|... |++++|...+++..+.. +-+...+..+-..+...|++++|+..|++..+.. .+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 888888 99999999998888752 2356778888888889999999999999988876 678888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047221 408 IKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 463 (509)
..+|...|++++|...|++..+.. +.+...+..+...+...|++++|++.+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999998887753 2356677888888889999999988888654
No 39
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=3.5e-12 Score=114.41 Aligned_cols=206 Identities=10% Similarity=-0.044 Sum_probs=176.1
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047221 295 KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIV 374 (509)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 374 (509)
+...|..+...+...|++++|.+.|+++.+.. +.+...+..+...|...|++++|.+.+++..+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 46778899999999999999999999998764 4567889999999999999999999999998763 346788999999
Q ss_pred HHHHc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 047221 375 YSCRV-GKFDVAFNFFNQMVKRGLQPR-LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNP 452 (509)
Q Consensus 375 ~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 452 (509)
.|... |++++|...++++.+.+..|+ ...+..+..+|...|++++|...|+++.+.. ..+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999988433343 6788899999999999999999999988764 23577889999999999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 453 VMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 453 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
++|.++++++.+..-..+...+..+...+...|+.++|..+++.+.+..+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 999999999987532246677888888889999999999999998865543
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=2.4e-13 Score=126.33 Aligned_cols=241 Identities=10% Similarity=-0.009 Sum_probs=167.6
Q ss_pred CCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHH
Q 047221 245 LTKKGIWRVVEVLNQVGG---SCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRD 317 (509)
Q Consensus 245 ~~~~~a~~~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~ 317 (509)
+++++|...++.+.+... +.+..++..+...|...|++++|...|++. +.+..+|..+...|...|++++|++
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 346666666666665421 123456777777888888888888888775 4567788888888888888888888
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 047221 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL 397 (509)
Q Consensus 318 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 397 (509)
.|++..+.. +.+..++..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+++.....
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 888887753 345777888888888888888888888888775 3444444445555567788888888887776652
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHH
Q 047221 398 QPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSS---SNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474 (509)
Q Consensus 398 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 474 (509)
+++...+. ++..+...++.++|...+++..+..... +...|..+...|.+.|++++|.+.|++..+. .|+. +
T Consensus 175 ~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~ 249 (275)
T 1xnf_A 175 DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN--F 249 (275)
T ss_dssp CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT--C
T ss_pred CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh--H
Confidence 33444444 6677777788888888888776542211 1467888888899999999999999998874 3532 2
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 047221 475 RRVLKHLHTSHQEHMAKCLS 494 (509)
Q Consensus 475 ~~ll~~~~~~g~~~~a~~~~ 494 (509)
.....++...|++++|++.+
T Consensus 250 ~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhhHHHH
Confidence 23345667778888887765
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.54 E-value=2.5e-12 Score=117.99 Aligned_cols=223 Identities=9% Similarity=-0.017 Sum_probs=186.7
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CC----HHH
Q 047221 195 SDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGS--CL----VSG 268 (509)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~--~~----~~~ 268 (509)
...|..+...+...|++++|...|+++.+.. .+...+..+...+. ..+++++|...++...+.... ++ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEY-EKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 3478889999999999999999999998877 67777777777444 455599999999998874321 12 578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc---CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT---ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG 345 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 345 (509)
+..+...|.+.|++++|...|++. .++. ..+.+.|++++|.+.++++.... +.+...+..+...+...|
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 899999999999999999999885 4553 35667788999999999998763 345677888999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047221 346 QDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVV 425 (509)
Q Consensus 346 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 425 (509)
++++|...+++..+.. +.+...|..+...|.+.|++++|...+++..+.. +.+...|..+..+|.+.|++++|...|+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999998863 4468889999999999999999999999998764 4468889999999999999999999999
Q ss_pred HHHhC
Q 047221 426 LSADK 430 (509)
Q Consensus 426 ~m~~~ 430 (509)
+..+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87754
No 42
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.54 E-value=4.4e-11 Score=129.04 Aligned_cols=297 Identities=10% Similarity=0.043 Sum_probs=202.5
Q ss_pred CCCCHHHHHHHHHHHhcCCc--hHHHHHHHhhccCCC-CccChhHHHHHHH---------------------------HH
Q 047221 156 VSLSNASVIEILRVLNSEKV--SALCFLKYMREIMPE-FYKNSDICSLVID---------------------------NC 205 (509)
Q Consensus 156 ~~~~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~~p~-~~~~~~~~~~li~---------------------------~~ 205 (509)
-..++.-....++++...|. +|+++++.+. ..|+ +..+...-+.++. .+
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Ia 1059 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIA 1059 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHH
Confidence 34566777778888887775 7899999883 3344 2223334454543 34
Q ss_pred hccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047221 206 GRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMA 285 (509)
Q Consensus 206 ~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (509)
...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VLie----~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVLIE----HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHHHH----HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 55667777777777642 11222233332 334477777776644 2366778888888888888888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047221 286 KYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD 365 (509)
Q Consensus 286 ~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 365 (509)
...|.+. .|...|..++.++.+.|++++|.+.|...++.. ++....+.++.+|++.+++++..... + .++
T Consensus 1125 IdsYiKA-dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1125 IDSYIKA-DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHHHhc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 8888765 667777888888888888888888888766653 33333334888888888877544332 2 346
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047221 366 AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASL 445 (509)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 445 (509)
...|..+-..|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. -+..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 666777788888888888888888874 37888888888888888888888765 255677777777
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 446 HDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
|...|++..|...... +..+...+..++..|.+.|.+++|+.+++.-.
T Consensus 1260 cve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777777665543 33355566777888888888888888886654
No 43
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.52 E-value=1.3e-11 Score=124.35 Aligned_cols=341 Identities=9% Similarity=-0.098 Sum_probs=223.8
Q ss_pred CHHHHHHHHHHHhcCCc--hHHHHHHHhhcc----CC--CCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCC-----
Q 047221 159 SNASVIEILRVLNSEKV--SALCFLKYMREI----MP--EFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQ----- 225 (509)
Q Consensus 159 ~~~~~~~ll~~~~~~~~--~A~~~~~~~~~~----~p--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----- 225 (509)
....|+.+-..+...|+ +|++.|+....+ .+ .......+|+.+...|...|++++|...+++..+..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 34567777667777775 788888876211 11 112345689999999999999999999998875421
Q ss_pred -Ccc-CHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHc----CCC
Q 047221 226 -VCL-NEKAFGFLPVLISS-KALTKKGIWRVVEVLNQVGGSCLVSGVRALIEM---FSVLGLYEMAKYVIKKT----ERK 295 (509)
Q Consensus 226 -~~p-~~~~~~~ll~~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m----~~~ 295 (509)
..+ ...++...-.+... ..+++++|...|++..+.. +-+...+..+..+ +...++.++|.+.+++. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcc
Confidence 112 23444433322222 2345899999999998765 3345555555554 44567778888888764 456
Q ss_pred HHHHHHHHHHHHh----cCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047221 296 VSYYNILIKEMCR----RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEI 371 (509)
Q Consensus 296 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 371 (509)
..++..+...+.. .|++++|.+.+++..... +.+..++..+...|...|++++|...+++..+.. +-+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 7777776666555 467889999999888764 5567788999999999999999999999988762 334566666
Q ss_pred HHHHHHHc-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 047221 372 FIVYSCRV-------------------GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYK 432 (509)
Q Consensus 372 li~~~~~~-------------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 432 (509)
+...|... +..++|...+++..+.. +.+..++..+...|...|++++|...|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 65555322 23567777887776653 33456788899999999999999999999887654
Q ss_pred CCCHH--HHHHHHH-HHHhCCChHHHHHHHHHHHHCC-----------------------CCcCHHHHHHHHHHHHhcCC
Q 047221 433 SSSNM--LYSLLAS-LHDKNNNPVMAKNVLSEMMKNG-----------------------LRPNVSVYRRVLKHLHTSHQ 486 (509)
Q Consensus 433 ~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~g-----------------------~~p~~~t~~~ll~~~~~~g~ 486 (509)
.+... .+..+.. .+...|+.++|++.|++..+.. -+.+..+|..+...|...|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~ 445 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK 445 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 43321 2222322 2347899999999998876532 12245678888889999999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 047221 487 EHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 487 ~~~a~~~~~~m~~~~~~ 503 (509)
+++|++.+++..+.+..
T Consensus 446 ~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 446 MQQADEDSERGLESGSL 462 (472)
T ss_dssp CC---------------
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999998877643
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=7.2e-11 Score=109.77 Aligned_cols=205 Identities=10% Similarity=-0.052 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHc--CCCHHHHHHHHHHHHh----cCCccHHH
Q 047221 247 KKGIWRVVEVLNQVGGSCLVSGVRALIEMFSV----LGLYEMAKYVIKKT--ERKVSYYNILIKEMCR----RCDFKGPR 316 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m--~~~~~~~~~li~~~~~----~g~~~~A~ 316 (509)
+++|...|+...+ +.+...+..+..+|.. .|++++|...|++. ..+..++..+...|.. .+++++|+
T Consensus 22 ~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~ 98 (273)
T 1ouv_A 22 FTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKAL 98 (273)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHH
Confidence 4444444444444 1223444455555555 66666666666554 2355666666666666 77777777
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHH
Q 047221 317 DLLVEMRQVGCEPITLTYNYVLGVLCK----NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR----VGKFDVAFNF 388 (509)
Q Consensus 317 ~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~ 388 (509)
+.|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+-..|.. .+++++|...
T Consensus 99 ~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~ 172 (273)
T 1ouv_A 99 QYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALAS 172 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7777776654 56677777777777 788888888888777765 55666667777776 7888888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHH
Q 047221 389 FNQMVKRGLQPRLATHAAFIKGYFI----FYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDK----NNNPVMAKNVLS 460 (509)
Q Consensus 389 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~ 460 (509)
|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.+ .+++++|++.|+
T Consensus 173 ~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~ 246 (273)
T 1ouv_A 173 YDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFK 246 (273)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 88877765 56677778888888 888888888888877765 35566777777877 788888888888
Q ss_pred HHHHCC
Q 047221 461 EMMKNG 466 (509)
Q Consensus 461 ~m~~~g 466 (509)
+..+.|
T Consensus 247 ~a~~~~ 252 (273)
T 1ouv_A 247 KGCKLG 252 (273)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 877654
No 45
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.49 E-value=7.9e-10 Score=113.28 Aligned_cols=338 Identities=10% Similarity=0.015 Sum_probs=224.5
Q ss_pred CCCHHHHHHHHHHHh-cCC--chHH----HHHHHh---hccCCCCccChhHHHHHHHHHhc---------cCCHHHHHHH
Q 047221 157 SLSNASVIEILRVLN-SEK--VSAL----CFLKYM---REIMPEFYKNSDICSLVIDNCGR---------LDDYETMRQL 217 (509)
Q Consensus 157 ~~~~~~~~~ll~~~~-~~~--~~A~----~~~~~~---~~~~p~~~~~~~~~~~li~~~~~---------~g~~~~A~~l 217 (509)
.|+...+...+.... ..| ..|. ++|+.. .|..| .+...|...+....+ .|+++.|..+
T Consensus 76 ~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~---~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 76 VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI---MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST---TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc---ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 356555555554221 222 2333 366665 23333 234567776666544 5778888888
Q ss_pred HHHhhhCCCccCHHHHHHHHHHH------------HhccCCHHHHHHHHHHHH------HcC---CCCC--------HHH
Q 047221 218 LNDFNVYQVCLNEKAFGFLPVLI------------SSKALTKKGIWRVVEVLN------QVG---GSCL--------VSG 268 (509)
Q Consensus 218 ~~~m~~~~~~p~~~~~~~ll~~~------------~~~~~~~~~a~~~~~~m~------~~g---~~~~--------~~~ 268 (509)
|++............|....... ....+.+..|..++..+. +.. ++|+ ...
T Consensus 153 y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 232 (530)
T 2ooe_A 153 YQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDM 232 (530)
T ss_dssp HHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHH
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHH
Confidence 88876631111123333222200 011223555665555422 111 2333 234
Q ss_pred HHHHHHHHHhc----CCH----HHHHHHHHHc----CCCHHHHHHHHHHHHh-------cCCcc-------HHHHHHHHH
Q 047221 269 VRALIEMFSVL----GLY----EMAKYVIKKT----ERKVSYYNILIKEMCR-------RCDFK-------GPRDLLVEM 322 (509)
Q Consensus 269 ~~~li~~~~~~----g~~----~~A~~~~~~m----~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m 322 (509)
|...+...... ++. +.|..+|++. +.+...|..++..+.+ .|+++ +|.++|++.
T Consensus 233 w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp HHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 55544333221 222 3566677664 6678899998888876 79987 899999998
Q ss_pred HHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047221 323 RQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD-A-ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR 400 (509)
Q Consensus 323 ~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 400 (509)
.+.-.+-+...|..++..+.+.|++++|..+|+++.+. .|+ . ..|...+..+.+.|+.++|..+|++..+.. +.+
T Consensus 313 l~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~ 389 (530)
T 2ooe_A 313 ISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTR 389 (530)
T ss_dssp TTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCC
T ss_pred HHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCc
Confidence 86322445888999999999999999999999999985 454 3 589999999999999999999999998763 222
Q ss_pred HHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCcC--HHHHHH
Q 047221 401 LATHAAFIKG-YFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNG-LRPN--VSVYRR 476 (509)
Q Consensus 401 ~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~t~~~ 476 (509)
...|...... +...|+.++|..+|++..+.. .-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|..
T Consensus 390 ~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~ 468 (530)
T 2ooe_A 390 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468 (530)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3333322222 346899999999999887653 2357889999999999999999999999998863 2332 457888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 477 VLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 477 ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
.+......|+.+.+..+.+++.+.-
T Consensus 469 ~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 469 FLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8888889999999999999887644
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.49 E-value=2.9e-12 Score=116.64 Aligned_cols=198 Identities=10% Similarity=0.030 Sum_probs=132.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHH
Q 047221 264 CLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLG 339 (509)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 339 (509)
.....+..+...+...|++++|...|++. +.+...|..+...|.+.|++++|++.|++..+.. +.+..++..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 34455677777888888888888888775 4467778888888888888888888888877654 345677777788
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047221 340 VLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED 419 (509)
Q Consensus 340 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 419 (509)
.|...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888777653 3356677777778888888888888888877653 3356777778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 420 AYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 420 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
|...|+++.+.. ..+..+|..+...|...|++++|.+.++++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888888776653 234667777888888888888888888887763
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.48 E-value=4.5e-12 Score=117.61 Aligned_cols=229 Identities=13% Similarity=0.090 Sum_probs=120.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC--hHHHHHHHHHHHhc
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI--TLTYNYVLGVLCKN 344 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~li~~~~~~ 344 (509)
.....|...|++++|...|++. +.+...|..+...|...|++++|++.|++..+.+-.++ ..+|..+...|...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 4445555556666666665553 23344555555566666666666666666555321111 22355555666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047221 345 GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYV 424 (509)
Q Consensus 345 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 424 (509)
|++++|.+.|++..+.. +.+...|..+...|...|++++|...|++..+. .+.+...+..+...+...+++++|.+.|
T Consensus 88 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655542 223455556666666666666666666655544 1223444554542222334666666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHCC-CCcC------HHHHHHHHHHHHhcCCHHHHHHHH
Q 047221 425 VLSADKYKSSSNMLYSLLASLHDKNNN---PVMAKNVLSEMMKNG-LRPN------VSVYRRVLKHLHTSHQEHMAKCLS 494 (509)
Q Consensus 425 ~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~t~~~ll~~~~~~g~~~~a~~~~ 494 (509)
+++.+.. ..+...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...|...|++++|.+.+
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 244 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6655442 1124445555555555555 555666665555421 1122 134555555666666666666666
Q ss_pred HHHHhCCC
Q 047221 495 SRYSSLSL 502 (509)
Q Consensus 495 ~~m~~~~~ 502 (509)
++..+..+
T Consensus 245 ~~al~~~p 252 (272)
T 3u4t_A 245 KNILALDP 252 (272)
T ss_dssp HHHHHHCT
T ss_pred HHHHhcCc
Confidence 66655443
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=9.3e-13 Score=122.34 Aligned_cols=244 Identities=9% Similarity=-0.082 Sum_probs=178.7
Q ss_pred hccCCHHHHHHHHHHhhhCCC--cc-CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047221 206 GRLDDYETMRQLLNDFNVYQV--CL-NEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLY 282 (509)
Q Consensus 206 ~~~g~~~~A~~l~~~m~~~~~--~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (509)
...|++++|+..|+++.+... .| +...+..+.. ++...|++++|...++.+.+.. +.+..++..+..+|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGV-LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHH-HHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 445788889999988877532 12 3445555555 4445556999999998888764 44678889999999999999
Q ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047221 283 EMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358 (509)
Q Consensus 283 ~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 358 (509)
++|...|++. +.+..+|..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|...+.+..
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999885 456888999999999999999999999999875 4555555556666677899999999998777
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 047221 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP---RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSS 435 (509)
Q Consensus 359 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 435 (509)
... +++...+. ++..+...++.++|...+++..+..... +..++..+...|.+.|++++|...|++..+.. |+
T Consensus 172 ~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH 247 (275)
T ss_dssp HHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT
T ss_pred hcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch
Confidence 652 33444444 6677778888899999998876542110 14778889999999999999999999988764 32
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHH
Q 047221 436 NMLYSLLASLHDKNNNPVMAKNVL 459 (509)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~a~~~~ 459 (509)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 223355667778888887766
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=3.3e-12 Score=116.21 Aligned_cols=202 Identities=7% Similarity=-0.022 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047221 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVY 375 (509)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 375 (509)
...|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3455556666666666666666666666542 3345566666666666666666666666665542 2245566666666
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 047221 376 SCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMA 455 (509)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 455 (509)
|...|++++|...++++.+.. +.+...+..+...|.+.|++++|...++++.+.. ..+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666665542 2345566666666666666666666666665442 22455566666666666666666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 456 KNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 456 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
++.++++.+.. ..+..++..+...|.+.|++++|.+.+++..+..+
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 66666665531 22355566666666666666666666666655443
No 50
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=1.9e-10 Score=115.77 Aligned_cols=304 Identities=13% Similarity=-0.001 Sum_probs=215.8
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhhhC-----C--Ccc-CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----
Q 047221 195 SDICSLVIDNCGRLDDYETMRQLLNDFNVY-----Q--VCL-NEKAFGFLPVLISSKALTKKGIWRVVEVLNQVG----- 261 (509)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g----- 261 (509)
+..||.|...+...|++++|++.|++..+. + ..| ...+|+.+-..+.. .|++++|...+++..+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~-~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH-MGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHhHhccc
Confidence 448999999999999999999999987542 1 122 34577777665554 455999999998876521
Q ss_pred --CCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHc----CCCHHHHHHHHHH---HHhcCCccHHHHHHHHHHHcCCCCC
Q 047221 262 --GSCLVSGVRALIEMFSVLG--LYEMAKYVIKKT----ERKVSYYNILIKE---MCRRCDFKGPRDLLVEMRQVGCEPI 330 (509)
Q Consensus 262 --~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m----~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 330 (509)
......+++.+..++.+.| ++++|...|++. +.+...+..+... +...++.++|++.+++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 1223566777766666654 699999999985 4456666665554 445678899999999888764 445
Q ss_pred hHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 047221 331 TLTYNYVLGVLCK----NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAA 406 (509)
Q Consensus 331 ~~t~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 406 (509)
..++..+...+.. .|++++|.+++++..... +.+...+..+...|.+.|++++|...+++..+.. +-+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 6666666655554 467789999999887753 4467789999999999999999999999998763 335667777
Q ss_pred HHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 047221 407 FIKGYFIF-------------------YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGL 467 (509)
Q Consensus 407 li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 467 (509)
+..+|... +..+.|...+++..+... .+..++..+...|...|++++|++.|++..+...
T Consensus 287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 76666432 335677778877766532 2344577899999999999999999999988544
Q ss_pred CcCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 468 RPNVS--VYRRVLK-HLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 468 ~p~~~--t~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
.+... .+..+.. .....|++++|++.+++..+...+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 33321 2222222 235789999999999988776543
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=1.7e-11 Score=119.40 Aligned_cols=231 Identities=7% Similarity=-0.055 Sum_probs=168.0
Q ss_pred CccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHc----CCCHHHHH
Q 047221 226 VCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGL-YEMAKYVIKKT----ERKVSYYN 300 (509)
Q Consensus 226 ~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m----~~~~~~~~ 300 (509)
+.|+.......+...+...++.++|+..++...+.. +-+..+|+.+..+|...|+ +++|...|++. +.+...|+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 345444333334445556667899999998888765 4457778888888888886 89988888885 56788888
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-c
Q 047221 301 ILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR-V 379 (509)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~ 379 (509)
.+...+.+.|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++.+.. +-+...|+.+..++.+ .
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhc
Confidence 88888888888888888888888764 4567788888888888888888888888888763 3357778888888888 5
Q ss_pred CChHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--
Q 047221 380 GKFDVA-----FNFFNQMVKRGLQPRLATHAAFIKGYFIFY--RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNN-- 450 (509)
Q Consensus 380 g~~~~a-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-- 450 (509)
|..++| +..|++.++.. +-+...|+.+...+.+.| ++++|.+.+.++ + ....+...+..+...|.+.|
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~ 325 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLEN 325 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcc
Confidence 555776 46777776652 235667777777777777 577788777776 2 22345566777777777653
Q ss_pred -------ChHHHHHHHHHH
Q 047221 451 -------NPVMAKNVLSEM 462 (509)
Q Consensus 451 -------~~~~a~~~~~~m 462 (509)
..++|+++++++
T Consensus 326 ~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 326 QCDNKEDILNKALELCEIL 344 (382)
T ss_dssp TCSSHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHH
Confidence 246777777776
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=6.6e-11 Score=115.33 Aligned_cols=245 Identities=9% Similarity=-0.021 Sum_probs=196.2
Q ss_pred ChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccC-HHHHHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHH
Q 047221 194 NSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLN-EKAFGFLPVLISSKALT-KKGIWRVVEVLNQVGGSCLVSGVRA 271 (509)
Q Consensus 194 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~~~~~ 271 (509)
+..+|+.+...+.+.|++++|+..+++..... |+ ...|+.+-. ++...|+ +++|+..++...+.. +-+...|+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~-~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRV-LLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHH-HHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 55689999999999999999999999997653 54 445555555 5555564 999999999999876 446788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCC
Q 047221 272 LIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK-NGQ 346 (509)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~ 346 (509)
+..+|.+.|++++|...|++. +.+..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.+ .|.
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 999999999999999999986 6789999999999999999999999999999875 4578899999999999 666
Q ss_pred hHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----
Q 047221 347 DADA-----CELLEEMLGRNCHPDAITYEIFIVYSCRVG--KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY---- 415 (509)
Q Consensus 347 ~~~a-----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---- 415 (509)
.++| +..|++..+.. +-+...|+.+...+.+.| +.++|.+.+.++ + ....+...+..+..+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 47788877752 335778988888898888 689999999988 3 33446788999999999874
Q ss_pred -----CHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHH
Q 047221 416 -----RYEDAYKYVVLS-ADKYKSSSNMLYSLLASLHD 447 (509)
Q Consensus 416 -----~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~ 447 (509)
..++|.++|+++ .+.+ ......|..+...+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 358999999998 5442 223345555554443
No 53
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.40 E-value=1.1e-09 Score=118.47 Aligned_cols=295 Identities=11% Similarity=0.044 Sum_probs=156.8
Q ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCC--ccCHHHHHH
Q 047221 158 LSNASVIEILRVLNSEKVSALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYETMRQLLNDFNVYQV--CLNEKAFGF 235 (509)
Q Consensus 158 ~~~~~~~~ll~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~--~p~~~~~~~ 235 (509)
-|...|..+|.- ....-.++.+|.....-....|+.--...+++|...|.+.+|++++++....+- .-+...-+.
T Consensus 951 ~d~~lW~~vl~~---~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 951 KDPELWGSVLLE---SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred cCHHHHHHHhcC---CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 444555555421 112244666665222211224555778889999999999999999999873321 112334444
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC---------------------
Q 047221 236 LPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTER--------------------- 294 (509)
Q Consensus 236 ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------------- 294 (509)
++. +..+.+ ..+..++........ ..-+...+...|.+++|..+|++...
T Consensus 1028 Li~-tAIkaD-~~Rv~eyI~kLd~~d-------~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~ 1098 (1630)
T 1xi4_A 1028 LIL-TAIKAD-RTRVMEYINRLDNYD-------APDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEF 1098 (1630)
T ss_pred HHH-HHHHhC-hhhHHHHHHHhhhcc-------HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHH
Confidence 443 333333 445555544443211 22344555555666666666555432
Q ss_pred -----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 047221 295 -----KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITY 369 (509)
Q Consensus 295 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 369 (509)
+..+|..+..++.+.|++++|++.|.+. -|...|..++.+|.+.|++++|.+.+....+.. ++....
T Consensus 1099 Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Id 1170 (1630)
T 1xi4_A 1099 AERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVE 1170 (1630)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cccccc
Confidence 2445555555555556666655555332 344455555555666666666666555444432 222222
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 047221 370 EIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKN 449 (509)
Q Consensus 370 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 449 (509)
+.++.+|++.+++++...+. + .++...|..+.+.|...|++++|..+|... ..|..+...|++.
T Consensus 1171 t~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 1234 (1630)
T ss_pred HHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHh
Confidence 23555555555555433221 1 224444555566666666666666666553 2466666666666
Q ss_pred CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047221 450 NNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLS 494 (509)
Q Consensus 450 g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 494 (509)
|++++|++.+++. -+..+|..+-.+|...|++..|....
T Consensus 1235 ge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1235 GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred CCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 6666666666654 23456666666666666666666554
No 54
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=5.9e-11 Score=109.99 Aligned_cols=232 Identities=9% Similarity=-0.044 Sum_probs=105.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCccC-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLN-EKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCL--VSGVRALI 273 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~li 273 (509)
.+......+...|++++|+..|++..+.. |+ ...+..+.. +....|++++|...++...+.+..++ ...|..+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAV-CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHH-HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHH-HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 44455556666666666666666665432 22 223333333 22233335555555555554221111 12244444
Q ss_pred HHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 047221 274 EMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACEL 353 (509)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~ 353 (509)
..|...|++++|... |++..+.. +.+..+|..+...|...|++++|.+.
T Consensus 82 ~~~~~~~~~~~A~~~------------------------------~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQ------------------------------YQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp HHHHHTTCHHHHHHH------------------------------HHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcccHHHHHHH------------------------------HHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHH
Confidence 444444555444444 44444332 22334444555555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhC
Q 047221 354 LEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR---YEDAYKYVVLSADK 430 (509)
Q Consensus 354 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~ 430 (509)
|++..+. .+.+...|..+...+...+++++|...|+++.+.. +.+...+..+..++...|+ .++|...+++..+.
T Consensus 131 ~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 131 MEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp HGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred HHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 5544443 12233334433312222335555555555554432 1224444445555555454 44444444444332
Q ss_pred C-CCCC------HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 431 Y-KSSS------NMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 431 ~-~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
. -.|+ ...|..+...|...|++++|.+.|++..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 209 CAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp HGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1 0111 13455555555666666666666666555
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=5.8e-10 Score=105.73 Aligned_cols=212 Identities=9% Similarity=0.014 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHc-----CCCHHHHHHHHHHHHh
Q 047221 248 KGIWRVVEVLNQVGGSCLVSGVRALIEMFS-------VLGLY-------EMAKYVIKKT-----ERKVSYYNILIKEMCR 308 (509)
Q Consensus 248 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m-----~~~~~~~~~li~~~~~ 308 (509)
++|..+|++..+.. +.+...|..++..+. +.|++ ++|..+|++. +.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 34445555555432 333444444444443 23443 4555555442 1233445555555555
Q ss_pred cCCccHHHHHHHHHHHcCCCCC-hH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCChHHH
Q 047221 309 RCDFKGPRDLLVEMRQVGCEPI-TL-TYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC-RVGKFDVA 385 (509)
Q Consensus 309 ~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~a 385 (509)
.|++++|.++|++..+. .|+ .. .|..+...+.+.|++++|.++|++..+.. +.+...|........ ..|+.++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555542 232 11 45555555555555555555555554432 122223322222111 13555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 047221 386 FNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY-KSS--SNMLYSLLASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 386 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m 462 (509)
..+|++..+.. +-+...|..++..+.+.|+.++|..+|++..... ..| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555544331 1234445555555555555555555555554431 222 2334444455555555555555555554
Q ss_pred HH
Q 047221 463 MK 464 (509)
Q Consensus 463 ~~ 464 (509)
.+
T Consensus 268 ~~ 269 (308)
T 2ond_A 268 FT 269 (308)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.39 E-value=3e-11 Score=119.32 Aligned_cols=195 Identities=10% Similarity=-0.041 Sum_probs=96.6
Q ss_pred hHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCH-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHc----C-CCCC
Q 047221 196 DICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNE-----KAFGFLPVLISSKALTKKGIWRVVEVLNQV----G-GSCL 265 (509)
Q Consensus 196 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~----g-~~~~ 265 (509)
..+..+...+...|++++|...|+++.+.+ |+. ..+..+...+. ..|++++|...+++..+. + .+..
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 344556666777888888888888776653 321 23444444333 344477777777665542 1 1222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHc-------C---CCHHHHHHHHHHHHhcCC-----------------ccHHHHH
Q 047221 266 VSGVRALIEMFSVLGLYEMAKYVIKKT-------E---RKVSYYNILIKEMCRRCD-----------------FKGPRDL 318 (509)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~---~~~~~~~~li~~~~~~g~-----------------~~~A~~~ 318 (509)
..++..+...|...|++++|...+++. . ....++..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 344556666666666666666666553 0 113345555555555555 5555555
Q ss_pred HHHHHHc----CCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHH
Q 047221 319 LVEMRQV----GCEP-ITLTYNYVLGVLCKNGQDADACELLEEMLGRNC-HPD----AITYEIFIVYSCRVGKFDVAFNF 388 (509)
Q Consensus 319 ~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~ 388 (509)
+++..+. +-.+ ...++..+...|...|++++|.+.+++..+... ..+ ...+..+...|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 5443321 1000 122344444445555555555555554444210 001 11334444444444444444444
Q ss_pred HHHHH
Q 047221 389 FNQMV 393 (509)
Q Consensus 389 ~~~m~ 393 (509)
+++..
T Consensus 286 ~~~al 290 (411)
T 4a1s_A 286 YKRTL 290 (411)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=2.2e-11 Score=119.76 Aligned_cols=291 Identities=11% Similarity=0.010 Sum_probs=207.0
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCccC----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-C
Q 047221 195 SDICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLN----EKAFGFLPVLISSKALTKKGIWRVVEVLNQV----GGSC-L 265 (509)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~ 265 (509)
...+......+...|++++|...|+++.+.... + ...+..+...+ ...|++++|...++...+. +..+ .
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAY-FYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 346667777888889999999999988776321 2 23455555534 4455589999888876543 2222 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHc----C--CC----HHHHHHHHHHHHhcCC--------------------ccHH
Q 047221 266 VSGVRALIEMFSVLGLYEMAKYVIKKT----E--RK----VSYYNILIKEMCRRCD--------------------FKGP 315 (509)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~--~~----~~~~~~li~~~~~~g~--------------------~~~A 315 (509)
..++..+...|...|++++|...+++. + .+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 456788889999999999999988875 1 22 4578888899999999 8999
Q ss_pred HHHHHHHHHc----CCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHH
Q 047221 316 RDLLVEMRQV----GCEP-ITLTYNYVLGVLCKNGQDADACELLEEMLGRNC-HPD----AITYEIFIVYSCRVGKFDVA 385 (509)
Q Consensus 316 ~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a 385 (509)
.+.+++..+. +-.+ ...++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9988876532 1111 234678888889999999999999988765310 112 23788888899999999999
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhCCChHHH
Q 047221 386 FNFFNQMVKR----GLQPR-LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKS-SS----NMLYSLLASLHDKNNNPVMA 455 (509)
Q Consensus 386 ~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a 455 (509)
...+++..+. +..+. ..++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999887643 11111 557888899999999999999999887653111 11 45788888999999999999
Q ss_pred HHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCH
Q 047221 456 KNVLSEMMKN----GLRP-NVSVYRRVLKHLHTSHQE 487 (509)
Q Consensus 456 ~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~ 487 (509)
.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 9999987652 2222 234566677777766654
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.39 E-value=1.6e-11 Score=117.07 Aligned_cols=205 Identities=11% Similarity=-0.019 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHcCC-CCC----hHHHHHHHHHHHhcCC--------------------hHHHH
Q 047221 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQVGC-EPI----TLTYNYVLGVLCKNGQ--------------------DADAC 351 (509)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~a~ 351 (509)
.++..+...|...|++++|.+.+++..+..- .++ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 3444555555555555555555554432210 011 2245555555666666 66666
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 047221 352 ELLEEMLGR----NCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKR----GLQ-PRLATHAAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 352 ~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~ 421 (509)
+.+++..+. +..+ ....+..+...+...|++++|...+++..+. +.. ....++..+...|...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 665554321 1111 1335666667777777887777777766533 100 01236777777788888888888
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCHHHHH
Q 047221 422 KYVVLSADKYKS-SS----NMLYSLLASLHDKNNNPVMAKNVLSEMMKN----GLRP-NVSVYRRVLKHLHTSHQEHMAK 491 (509)
Q Consensus 422 ~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~ 491 (509)
..+++..+.... .+ ..++..+...|...|++++|.+.+++..+. +-.+ ...++..+...|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 888766542110 11 446777788888888888888888877652 1111 1346777788888889999999
Q ss_pred HHHHHHHhCC
Q 047221 492 CLSSRYSSLS 501 (509)
Q Consensus 492 ~~~~~m~~~~ 501 (509)
+.+++..+..
T Consensus 324 ~~~~~a~~~~ 333 (338)
T 3ro2_A 324 HFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.38 E-value=2.6e-11 Score=119.79 Aligned_cols=252 Identities=11% Similarity=-0.039 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHc----------CCCHHHHHHHHHHHHhcCC
Q 047221 246 TKKGIWRVVEVLNQVGGSCLV----SGVRALIEMFSVLGLYEMAKYVIKKT----------ERKVSYYNILIKEMCRRCD 311 (509)
Q Consensus 246 ~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m----------~~~~~~~~~li~~~~~~g~ 311 (509)
++++|...++...+.... +. ..+..+...|...|++++|...|++. +....+|..+...|...|+
T Consensus 63 ~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 141 (411)
T 4a1s_A 63 DCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGR 141 (411)
T ss_dssp CHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC
Confidence 355555555555543211 11 24445555555555555555554442 0113344445555555555
Q ss_pred ccHHHHHHHHHHHc----C-CCCChHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHhC----CCCC-
Q 047221 312 FKGPRDLLVEMRQV----G-CEPITLTYNYVLGVLCKNGQ-----------------DADACELLEEMLGR----NCHP- 364 (509)
Q Consensus 312 ~~~A~~~~~~m~~~----g-~~p~~~t~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~----g~~p- 364 (509)
+++|.+.|++..+. + ......++..+...|...|+ +++|.+.+.+..+. +..+
T Consensus 142 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~ 221 (411)
T 4a1s_A 142 FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGA 221 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55555555544322 1 01112344445555555555 55555555443321 1111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-----C
Q 047221 365 DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL-QPR----LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKS-----S 434 (509)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----p 434 (509)
...++..+...|...|++++|...+++..+... ..+ ..++..+...|...|++++|...+++..+.... .
T Consensus 222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 301 (411)
T 4a1s_A 222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV 301 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 122444444555555555555555554433200 001 124444555555555555555555444322100 0
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 435 SNMLYSLLASLHDKNNNPVMAKNVLSEMMKN----GLRP-NVSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
...++..+...|...|++++|.+++++..+. +..+ ...++..+...|.+.|++++|.+.+++..
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1234444555555555555555555554431 0000 12244444455555555555555555443
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=2.6e-11 Score=119.25 Aligned_cols=260 Identities=12% Similarity=-0.046 Sum_probs=199.1
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHc------CC----CHHHHHHHHHHH
Q 047221 240 ISSKALTKKGIWRVVEVLNQVGGSCL---VSGVRALIEMFSVLGLYEMAKYVIKKT------ER----KVSYYNILIKEM 306 (509)
Q Consensus 240 ~~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m------~~----~~~~~~~li~~~ 306 (509)
.+...|++++|...++...+...... ..++..+...|...|++++|...+++. .. ...+|..+...|
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 44456669999999999988743211 357889999999999999999999874 11 256788899999
Q ss_pred HhcCCccHHHHHHHHHHHcCC-CCC----hHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHhC-
Q 047221 307 CRRCDFKGPRDLLVEMRQVGC-EPI----TLTYNYVLGVLCKNGQ--------------------DADACELLEEMLGR- 360 (509)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~- 360 (509)
...|++++|+..+++..+..- .++ ..++..+...|...|+ +++|.+.+.+..+.
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998765310 112 4478888899999999 99999998876542
Q ss_pred ---CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-
Q 047221 361 ---NCHPD-AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL-QPR----LATHAAFIKGYFIFYRYEDAYKYVVLSADK- 430 (509)
Q Consensus 361 ---g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 430 (509)
+..+. ..++..+...|...|++++|...+++..+... .++ ..++..+...|...|++++|...+++..+.
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 21122 34688888999999999999999998764310 112 347888999999999999999999987643
Q ss_pred ---CCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 431 ---YKSS-SNMLYSLLASLHDKNNNPVMAKNVLSEMMKN----GLRP-NVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 431 ---~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
+..+ ...++..+...|...|++++|.+.+++..+. +-.+ ...++..+...|...|++++|.+.+++..+
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1111 1457888999999999999999999988763 2111 145778888899999999999999988664
No 61
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.37 E-value=3.2e-11 Score=114.93 Aligned_cols=266 Identities=12% Similarity=0.014 Sum_probs=194.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCccC-----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CCH
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLN-----EKAFGFLPVLISSKALTKKGIWRVVEVLNQV----GGS-CLV 266 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~-----~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~ 266 (509)
.+......+...|++++|...|+++.+.. |+ ...+..+... ....|++++|...++...+. +.. ...
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNA-YFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 45555667788899999999998887753 33 2445555553 34455588888888876542 222 224
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHc------CCC----HHHHHHHHHHHHhcCC--------------------ccHHH
Q 047221 267 SGVRALIEMFSVLGLYEMAKYVIKKT------ERK----VSYYNILIKEMCRRCD--------------------FKGPR 316 (509)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m------~~~----~~~~~~li~~~~~~g~--------------------~~~A~ 316 (509)
.++..+...|...|++++|...+++. ..+ ..++..+...|...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 56788899999999999999998874 122 4478888899999999 89999
Q ss_pred HHHHHHHHc----CCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHH
Q 047221 317 DLLVEMRQV----GCE-PITLTYNYVLGVLCKNGQDADACELLEEMLGR----NCHP-DAITYEIFIVYSCRVGKFDVAF 386 (509)
Q Consensus 317 ~~~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~ 386 (509)
+.+++.... +-. ....++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 988876532 211 12346788888899999999999999887653 1111 1337888888999999999999
Q ss_pred HHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCChHHHH
Q 047221 387 NFFNQMVKRGL-QPR----LATHAAFIKGYFIFYRYEDAYKYVVLSADK----YK-SSSNMLYSLLASLHDKNNNPVMAK 456 (509)
Q Consensus 387 ~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~ 456 (509)
..+++..+... ..+ ..++..+...|...|++++|...+++..+. +. .....++..+...|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 99998764311 012 557788899999999999999999887653 11 112347788999999999999999
Q ss_pred HHHHHHHHC
Q 047221 457 NVLSEMMKN 465 (509)
Q Consensus 457 ~~~~~m~~~ 465 (509)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999998864
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=2.4e-10 Score=99.22 Aligned_cols=166 Identities=11% Similarity=0.007 Sum_probs=96.6
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047221 295 KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIV 374 (509)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 374 (509)
+...|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+....... +-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 44555566666666666666666666655543 2345555566666666666666666666555442 223445555555
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 047221 375 YSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVM 454 (509)
Q Consensus 375 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 454 (509)
.+...++++.|...+.+..+.. +-+...+..+..+|.+.|++++|++.|++..+.. +.+...|..+...|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 5666666666666666655442 2245556666666666666666666666655543 2244556666666666666666
Q ss_pred HHHHHHHHHH
Q 047221 455 AKNVLSEMMK 464 (509)
Q Consensus 455 a~~~~~~m~~ 464 (509)
|++.|++..+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666655
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=4.5e-11 Score=112.91 Aligned_cols=237 Identities=13% Similarity=0.093 Sum_probs=169.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC---------CC---HHHHHHHHHHHHhcCCccHHHHHHHHHHHc-----
Q 047221 263 SCLVSGVRALIEMFSVLGLYEMAKYVIKKTE---------RK---VSYYNILIKEMCRRCDFKGPRDLLVEMRQV----- 325 (509)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 325 (509)
+.+..++..+...|...|++++|..+|++.- .+ ..++..+...|...|++++|.+.+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 3446678899999999999999999998851 12 567888999999999999999999988754
Q ss_pred -CC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-
Q 047221 326 -GC-EPITLTYNYVLGVLCKNGQDADACELLEEMLGR------NCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKR- 395 (509)
Q Consensus 326 -g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 395 (509)
+- .....++..+...|...|++++|.+.+++..+. +..| ....+..+...|...|++++|...++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 21 233567888999999999999999999988764 2222 3456888889999999999999999998764
Q ss_pred -----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCC-------HHHHHHHHHHHHhCCChHHH
Q 047221 396 -----GLQP-RLATHAAFIKGYFIFYRYEDAYKYVVLSADK-------YKSSS-------NMLYSLLASLHDKNNNPVMA 455 (509)
Q Consensus 396 -----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-------~~~~~~li~~~~~~g~~~~a 455 (509)
+..| ...++..+..+|...|++++|.+.++++.+. ...+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 3457888999999999999999999988753 11111 12233333444455666666
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047221 456 KNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 456 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 500 (509)
...++..... -..+..++..+..+|.+.|++++|.+++++..+.
T Consensus 264 ~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 264 GGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7777766542 2334567888999999999999999999988754
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.32 E-value=4.6e-10 Score=97.44 Aligned_cols=164 Identities=13% Similarity=-0.006 Sum_probs=140.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHH
Q 047221 264 CLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLG 339 (509)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 339 (509)
-+..+|..+...|.+.|++++|...|++. +.+..+|..+...|.+.|++++|+..+....... .-+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 35678899999999999999999999885 5678899999999999999999999999888764 445677778888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047221 340 VLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED 419 (509)
Q Consensus 340 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 419 (509)
.+...++++.|...+.+..+. .+-+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 899999999999999988775 24467788888999999999999999999988763 3467889999999999999999
Q ss_pred HHHHHHHHHhC
Q 047221 420 AYKYVVLSADK 430 (509)
Q Consensus 420 A~~~~~~m~~~ 430 (509)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988775
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.32 E-value=1e-10 Score=114.57 Aligned_cols=291 Identities=9% Similarity=-0.081 Sum_probs=202.1
Q ss_pred hccCCHHHHHHHHHHhhhC--CC--ccCHHHHHHHHHHHH-hccCCHHHHH-----------HHHHHHHHcCCCCCH---
Q 047221 206 GRLDDYETMRQLLNDFNVY--QV--CLNEKAFGFLPVLIS-SKALTKKGIW-----------RVVEVLNQVGGSCLV--- 266 (509)
Q Consensus 206 ~~~g~~~~A~~l~~~m~~~--~~--~p~~~~~~~ll~~~~-~~~~~~~~a~-----------~~~~~m~~~g~~~~~--- 266 (509)
.+.+++++|..+++++.+. .+ .++...|-.++..-. ...+..+.+. ..++.+.......+.
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~ 102 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLE 102 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHH
Confidence 4678899999998887554 22 223333333333111 1111133333 555555442211111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHc------CCC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCC-CC-----
Q 047221 267 -SGVRALIEMFSVLGLYEMAKYVIKKT------ERK----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC-EP----- 329 (509)
Q Consensus 267 -~~~~~li~~~~~~g~~~~A~~~~~~m------~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----- 329 (509)
..+......+...|++++|...|++. .+| ..+|..+...|...|++++|++.+.+..+.-- .+
T Consensus 103 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 103 YYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence 11233667788899999999999885 122 46788999999999999999999998775310 11
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CC-CC
Q 047221 330 ITLTYNYVLGVLCKNGQDADACELLEEMLGR----NCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKR----GL-QP 399 (509)
Q Consensus 330 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p 399 (509)
...+++.+...|...|++++|...|.+..+. +-.+ ...++..+...|...|++++|...+++..+. +. ..
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~ 262 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS 262 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh
Confidence 2457888889999999999999999887653 1111 1247888889999999999999999988762 22 33
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHCCCCcC-H
Q 047221 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADK----YKSSSNMLYSLLASLHDKNNN---PVMAKNVLSEMMKNGLRPN-V 471 (509)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~-~ 471 (509)
...++..+...|.+.|++++|...+++..+. +-......+..+...|...|+ .++|+.++++. +..|+ .
T Consensus 263 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~ 339 (383)
T 3ulq_A 263 LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLE 339 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHH
Confidence 4677899999999999999999999887653 112223346678888888898 77788777765 33333 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 472 SVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 472 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
..+..+...|...|++++|.+.+++..+
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4677788899999999999999998874
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.32 E-value=1.7e-09 Score=102.51 Aligned_cols=217 Identities=11% Similarity=-0.018 Sum_probs=168.6
Q ss_pred HHHHHHHHHhhhCCCccCHHHHHHHHHHHHh------ccCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 047221 212 ETMRQLLNDFNVYQVCLNEKAFGFLPVLISS------KALTK-------KGIWRVVEVLNQVGGSCLVSGVRALIEMFSV 278 (509)
Q Consensus 212 ~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~------~~~~~-------~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (509)
++|..+|++..... +-+...|..+...+.. ..|+. ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888876642 2355566666554332 23444 8999999998873234466789999999999
Q ss_pred cCCHHHHHHHHHHc---CC-CHH-HHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCChHHHHH
Q 047221 279 LGLYEMAKYVIKKT---ER-KVS-YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLC-KNGQDADACE 352 (509)
Q Consensus 279 ~g~~~~A~~~~~~m---~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~a~~ 352 (509)
.|++++|..+|++. .| +.. .|..++..+.+.|++++|..+|++..+.+ +.+...|........ ..|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999985 34 344 89999999999999999999999998764 344555554433322 3799999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047221 353 LLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG-LQP--RLATHAAFIKGYFIFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 353 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (509)
+|++..+. .+-+...|..++..+.+.|+.++|..+|++..+.. +.| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 191 ~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99998875 23467889999999999999999999999999863 454 467899999999999999999999999887
Q ss_pred CC
Q 047221 430 KY 431 (509)
Q Consensus 430 ~~ 431 (509)
..
T Consensus 270 ~~ 271 (308)
T 2ond_A 270 AF 271 (308)
T ss_dssp HT
T ss_pred Hc
Confidence 53
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=8.2e-11 Score=118.70 Aligned_cols=210 Identities=10% Similarity=-0.047 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHH
Q 047221 247 KKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLY-EMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVE 321 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 321 (509)
++++...++...... +.+...+..+...|...|++ ++|+..|++. +.+..+|..+...|.+.|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666554422 34566777777777777777 7777777764 34567777777777777777777777777
Q ss_pred HHHcCCCCChHHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CChHH
Q 047221 322 MRQVGCEPITLTYNYVLGVLCKN---------GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRV--------GKFDV 384 (509)
Q Consensus 322 m~~~g~~p~~~t~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~~ 384 (509)
..+. .|+...+..+...|... |++++|.+.|++..+.. +-+...|..+..+|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 7765 46666777777777777 77777777777766652 23466677777777766 77777
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 047221 385 AFNFFNQMVKRGLQ--PRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 385 a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 461 (509)
|...|++..+..-. -+...|..+..+|...|++++|.+.|++..+.. .-+...+..+...+...|++++|++.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77777776664210 256667777777777777777777777666543 22445566666666666666666665543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=7.4e-10 Score=108.40 Aligned_cols=225 Identities=8% Similarity=0.000 Sum_probs=172.2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc------CCC-----HHHHH
Q 047221 237 PVLISSKALTKKGIWRVVEVLNQV----GGSC-LVSGVRALIEMFSVLGLYEMAKYVIKKT------ERK-----VSYYN 300 (509)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~-----~~~~~ 300 (509)
...+....|++++|...++...+. +..+ ...++..+...|...|+++.|...+++. ..+ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 333455667799999999998764 2222 3467889999999999999999998874 122 46788
Q ss_pred HHHHHHHhcCCccHHHHHHHHHHHcCC-CCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHHH
Q 047221 301 ILIKEMCRRCDFKGPRDLLVEMRQVGC-EPI----TLTYNYVLGVLCKNGQDADACELLEEMLGR----NC-HPDAITYE 370 (509)
Q Consensus 301 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~ 370 (509)
.+...|...|++++|++.|++..+..- .++ ..++..+...|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999998774310 111 247888999999999999999999988772 33 33466788
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 047221 371 IFIVYSCRVGKFDVAFNFFNQMVKR----GLQPRLATHAAFIKGYFIFYR---YEDAYKYVVLSADKYKSS-SNMLYSLL 442 (509)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~l 442 (509)
.+...|.+.|++++|...+++..+. +-......+..+...|...|+ +++|..++++. +..+ ....+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999987653 211123345778888888898 78888888765 2222 23467789
Q ss_pred HHHHHhCCChHHHHHHHHHHHH
Q 047221 443 ASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 443 i~~~~~~g~~~~a~~~~~~m~~ 464 (509)
...|...|++++|.+.+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999998865
No 69
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.27 E-value=1.9e-10 Score=116.09 Aligned_cols=193 Identities=11% Similarity=-0.008 Sum_probs=90.8
Q ss_pred CHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047221 295 KVSYYNILIKEMCRRCDF-KGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFI 373 (509)
Q Consensus 295 ~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 373 (509)
+...|..+...|...|++ ++|++.|++..+.. +-+...|..+..+|.+.|++++|.+.|++..+. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 344455555555555555 55555555544432 223444555555555555555555555555443 23444444444
Q ss_pred HHHHHc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhCCCC--C
Q 047221 374 VYSCRV---------GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF--------YRYEDAYKYVVLSADKYKS--S 434 (509)
Q Consensus 374 ~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~--p 434 (509)
..|... |++++|...|++..+.. +-+...|..+..+|... |++++|.+.|++..+.... -
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 455444 55555555555544432 22344455555555544 5555555555554443210 2
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 047221 435 SNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKC 492 (509)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 492 (509)
+...|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|.+
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555544421 1123334444444444555555444
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.26 E-value=6.8e-09 Score=101.02 Aligned_cols=297 Identities=11% Similarity=-0.023 Sum_probs=169.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHH----HHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----HH
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEK----AFGFLPVLISSKALTKKGIWRVVEVLNQVGG-SCL----VS 267 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~ 267 (509)
.+......+...|++++|...+++.....-..+.. .+..+-. +....|++++|...+++..+... ..+ ..
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGE-VLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHH-HHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34444556667888888888888876653222221 2223333 23344558888887777654211 111 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc--------C---C-CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCC--C--Ch
Q 047221 268 GVRALIEMFSVLGLYEMAKYVIKKT--------E---R-KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCE--P--IT 331 (509)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m--------~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~ 331 (509)
++..+...|...|++++|...+++. . + ....+..+...+...|++++|...+++.....-. + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3566777777788888887777663 1 1 1344556667777778888888887776643211 1 13
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHH
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD--AITYE----IFIVYSCRVGKFDVAFNFFNQMVKRGLQP---RLA 402 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~ 402 (509)
.++..+...+...|++++|...+++.....-.++ ..... ..+..+...|+.++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 4566667777777888888877777654311111 11111 22234667778888877777765432111 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHH
Q 047221 403 THAAFIKGYFIFYRYEDAYKYVVLSADK----YKSSSN-MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRV 477 (509)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 477 (509)
.+..+...+...|++++|...+++..+. +..++. ..+..+..++...|+.++|.+.+++..... +. ...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~ 328 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGF 328 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccH
Confidence 4556667777778888877777766432 211122 255556667777777788877777776531 10 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC
Q 047221 478 LKHLHTSHQEHMAKCLSSRYSSLSL 502 (509)
Q Consensus 478 l~~~~~~g~~~~a~~~~~~m~~~~~ 502 (509)
+..+...| +....+++.+...+.
T Consensus 329 ~~~~~~~g--~~~~~ll~~~~~~~~ 351 (373)
T 1hz4_A 329 ISHFVIEG--EAMAQQLRQLIQLNT 351 (373)
T ss_dssp CHHHHTTH--HHHHHHHHHHHHTTC
T ss_pred HHHHHHcc--HHHHHHHHHHHhCCC
Confidence 23344444 556666666655544
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.25 E-value=1.9e-10 Score=108.50 Aligned_cols=233 Identities=11% Similarity=0.047 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---------C
Q 047221 230 EKAFGFLPVLISSKALTKKGIWRVVEVLNQV-------GGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT---------E 293 (509)
Q Consensus 230 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~ 293 (509)
..++..+.. ++...|++++|..+++.+.+. ..+....++..+...|...|++++|...+++. .
T Consensus 27 ~~~~~~l~~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVI-QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 455565555 444556699999999998874 34445677899999999999999999999874 1
Q ss_pred ---CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHc------CCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC---
Q 047221 294 ---RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV------GCEP-ITLTYNYVLGVLCKNGQDADACELLEEMLGR--- 360 (509)
Q Consensus 294 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--- 360 (509)
....+|..+...|...|++++|.+.|++..+. +-.| ....+..+...|...|++++|.+++++..+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12567889999999999999999999988764 2222 3566788899999999999999999998764
Q ss_pred ---CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHHcCCHHHHHH
Q 047221 361 ---NCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKR-------GLQPRL-------ATHAAFIKGYFIFYRYEDAYK 422 (509)
Q Consensus 361 ---g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~-------~~~~~li~~~~~~g~~~~A~~ 422 (509)
+..| ...++..+...|.+.|++++|...++++.+. ...+.. ..+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2233 2457888899999999999999999998753 111111 112223333344455555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 423 YVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
.++...... .....+|..+...|.+.|++++|.++|++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 565544321 22456788899999999999999999998875
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.24 E-value=1.3e-09 Score=106.41 Aligned_cols=299 Identities=9% Similarity=-0.069 Sum_probs=202.9
Q ss_pred HHHHHHHHH--hccCCHHHHHHHHHHhhhC--CCc--cCHHHHHHHHHHHH-hccCCHHHHH---------HHHHHHHHc
Q 047221 197 ICSLVIDNC--GRLDDYETMRQLLNDFNVY--QVC--LNEKAFGFLPVLIS-SKALTKKGIW---------RVVEVLNQV 260 (509)
Q Consensus 197 ~~~~li~~~--~~~g~~~~A~~l~~~m~~~--~~~--p~~~~~~~ll~~~~-~~~~~~~~a~---------~~~~~m~~~ 260 (509)
+-+.|-..| .+.+++++|.++++++... .+. .+...|-.++..-. ...+...... ..++.+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 445555555 6788899999999886543 121 22333333333110 0001111222 555554432
Q ss_pred CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHc------CCC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHc-
Q 047221 261 GGSCLV----SGVRALIEMFSVLGLYEMAKYVIKKT------ERK----VSYYNILIKEMCRRCDFKGPRDLLVEMRQV- 325 (509)
Q Consensus 261 g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m------~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 325 (509)
..+.+. ..+......+...|++++|...|++. .++ ..++..+...|...|++++|+..+.+..+.
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 211111 12334556678899999999999885 122 567888999999999999999999887643
Q ss_pred ---C-CCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH-
Q 047221 326 ---G-CEP-ITLTYNYVLGVLCKNGQDADACELLEEMLGR----NCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVK- 394 (509)
Q Consensus 326 ---g-~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 394 (509)
+ ..+ ...+++.+...|...|++++|.+.|.+..+. |..+ ...++..+...|...|++++|...+++..+
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 111 2457788999999999999999999887653 2111 134678888899999999999999999876
Q ss_pred ----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhCCC---hHHHHHHHHHHH
Q 047221 395 ----RGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY----KSSSNMLYSLLASLHDKNNN---PVMAKNVLSEMM 463 (509)
Q Consensus 395 ----~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~ 463 (509)
.. +....++..+...|.+.|+.++|...+++..+.. -......+..+...|...|+ ..+|+.++++
T Consensus 252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-- 328 (378)
T 3q15_A 252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-- 328 (378)
T ss_dssp HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH--
T ss_pred HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh--
Confidence 42 2236778889999999999999999999887642 22234456666677777888 7778877776
Q ss_pred HCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 464 KNGLRPN-VSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 464 ~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
.+..|+ ...+..+...|...|++++|.+.+++..+
T Consensus 329 -~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 329 -KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233333 34667788899999999999999988764
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.23 E-value=1.6e-09 Score=93.43 Aligned_cols=156 Identities=15% Similarity=-0.011 Sum_probs=71.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 344 (509)
+..+...|...|++++|...|+++ +.+...|..+...+...|++++|.+.++++.+.. +.+...+..+...|...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence 444555555555555555555553 2334445555555555555555555555544432 22344444444444444
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047221 345 GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYV 424 (509)
Q Consensus 345 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 424 (509)
|++++|.+.++++.+. .+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...|...|++++|...+
T Consensus 90 ~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555544444433 12233344444444444444444444444444331 122334444444444444444444444
Q ss_pred HHH
Q 047221 425 VLS 427 (509)
Q Consensus 425 ~~m 427 (509)
++.
T Consensus 168 ~~~ 170 (186)
T 3as5_A 168 KKA 170 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=1.6e-09 Score=93.44 Aligned_cols=163 Identities=13% Similarity=0.033 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 047221 334 YNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFI 413 (509)
Q Consensus 334 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 413 (509)
|..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3334444444455555555444444331 2234444444445555555555555555544431 2234444555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 047221 414 FYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCL 493 (509)
Q Consensus 414 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 493 (509)
.|++++|.+.++++.+.. ..+...+..+...+...|++++|.++++++.+.. ..+...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555544432 1234445555555555555555555555554431 22344555555555555555555555
Q ss_pred HHHHHhC
Q 047221 494 SSRYSSL 500 (509)
Q Consensus 494 ~~~m~~~ 500 (509)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555443
No 75
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.19 E-value=2.1e-09 Score=107.62 Aligned_cols=300 Identities=11% Similarity=0.009 Sum_probs=199.2
Q ss_pred hHHHHHHHhhccCCCCccChhHHHHHHHHHhccC-----CHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccC--CHH
Q 047221 176 SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLD-----DYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKAL--TKK 248 (509)
Q Consensus 176 ~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~ 248 (509)
+|++.|+......| ..+..|...+...+ ++++|...|++..+.|... .+..+-..+....+ .-.
T Consensus 56 ~A~~~~~~A~~~~~------~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~ 126 (452)
T 3e4b_A 56 QAEATYRAAADTSP------RAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNV 126 (452)
T ss_dssp ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTC
T ss_pred HHHHHHHHHHhCCH------HHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCH
Confidence 57777766622122 25666655444444 6777888887777765322 33333333333222 113
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHc-CCCHHHHHHHHHHHHhcC---CccHHHHHHH
Q 047221 249 GIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGL----YEMAKYVIKKT-ERKVSYYNILIKEMCRRC---DFKGPRDLLV 320 (509)
Q Consensus 249 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m-~~~~~~~~~li~~~~~~g---~~~~A~~~~~ 320 (509)
++.+.+......|. ......|...|...+. .+.+..+++.. ..+...+..|...|.+.| +.++|++.|+
T Consensus 127 ~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~ 203 (452)
T 3e4b_A 127 NAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQME 203 (452)
T ss_dssp CHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 34444444444442 3455677777777774 45555555554 345558889999999999 8999999999
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHH
Q 047221 321 EMRQVGCEPITLTYNYVLGVLCKN----GQDADACELLEEMLGRNCHPDAITYEIFIVY-S--CRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 321 ~m~~~g~~p~~~t~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~ 393 (509)
+..+.| .++...+..|...|... +++++|.+.|+... .| +...+..|-.. | ...++.++|...|++..
T Consensus 204 ~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 204 AGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 999887 66666667777777655 78999999999887 43 55566666665 3 46899999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHH
Q 047221 394 KRGLQPRLATHAAFIKGYFIFY-----RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDK----NNNPVMAKNVLSEMMK 464 (509)
Q Consensus 394 ~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~ 464 (509)
+.| +...+..|-..|. .| +.++|.+.|++.. .| +...+..|...|.. ..+.++|.++|++..+
T Consensus 279 ~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 279 AAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 887 7888888888887 55 9999999998877 33 66777778877776 3489999999999988
Q ss_pred CCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC
Q 047221 465 NGLRPNVSVYRRVLKHLHT----SHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 465 ~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~ 503 (509)
.|. | .....|-..|.. ..+.++|...++.-.+.|..
T Consensus 351 ~g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 351 NGQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp TTC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred hCh-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 774 2 344555555553 45899999999998887753
No 76
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.18 E-value=9.2e-09 Score=102.97 Aligned_cols=299 Identities=11% Similarity=-0.025 Sum_probs=204.6
Q ss_pred hHHHHHHHhhccCCCCccChhHHHHHHHHHhccCCHH---HHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHH
Q 047221 176 SALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDDYE---TMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWR 252 (509)
Q Consensus 176 ~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~ 252 (509)
+|++.|+......+ ...+..|...|...+..+ .+.+.+......|. ......+-..+.. ++.++.+..
T Consensus 92 ~A~~~~~~Aa~~g~-----~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~-~~~~~~~~~ 162 (452)
T 3e4b_A 92 EAESLLKKAFANGE-----GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRT-QGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHTTC-----SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHH-HTCGGGGHH
T ss_pred HHHHHHHHHHHCCC-----HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHc-CCCcccCHH
Confidence 68889988833211 127777888887766544 34555555544443 3344444443333 332444444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHc----CCCHHHHHHHHHHHHhc----CCccHHHHHHHH
Q 047221 253 VVEVLNQVGGSCLVSGVRALIEMFSVLG---LYEMAKYVIKKT----ERKVSYYNILIKEMCRR----CDFKGPRDLLVE 321 (509)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m----~~~~~~~~~li~~~~~~----g~~~~A~~~~~~ 321 (509)
......+.-...+...+..|..+|.+.| +.++|...|++. +++...+..|...|... +++++|++.|++
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~ 242 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEK 242 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHH
Confidence 3333332222233337889999999999 999999999885 45566667777777655 689999999999
Q ss_pred HHHcCCCCChHHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHH
Q 047221 322 MRQVGCEPITLTYNYVLGV-L--CKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG-----KFDVAFNFFNQMV 393 (509)
Q Consensus 322 m~~~g~~p~~~t~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~ 393 (509)
.. .| +...+..|... | ...+++++|.+.|++..+.| +...+..|-..|. .| +.++|...|++..
T Consensus 243 aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 243 IA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred Hc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 87 43 45666666666 3 46899999999999999887 6777777777776 55 9999999999887
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHC
Q 047221 394 KRGLQPRLATHAAFIKGYFI----FYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDK----NNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 394 ~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~ 465 (509)
.| +...+..|-..|.. ..+.++|.++|++..+.|. ......|...|.. ..+.++|..+|+...+.
T Consensus 315 -~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 315 -GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp -TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred -CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 44 77888888888876 3489999999999988774 3344556666664 45899999999999988
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 466 GLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 466 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
|... .......+......++.++|..+.++.++
T Consensus 388 g~~~-a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 388 DTPE-ANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CCHH-HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7532 33333333333344567788888877664
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.16 E-value=2.6e-08 Score=96.89 Aligned_cols=254 Identities=13% Similarity=-0.002 Sum_probs=148.7
Q ss_pred hHHHHHHHhhccCCCCcc--ChhHHHHHHHHHhccCCHHHHHHHHHHhhhCCCc-cCH----HHHHHHHHHHHhccCCHH
Q 047221 176 SALCFLKYMREIMPEFYK--NSDICSLVIDNCGRLDDYETMRQLLNDFNVYQVC-LNE----KAFGFLPVLISSKALTKK 248 (509)
Q Consensus 176 ~A~~~~~~~~~~~p~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~-p~~----~~~~~ll~~~~~~~~~~~ 248 (509)
.|...++......|.... ...+++.+...+...|++++|.+.+++.....-. .+. .++..+-. .....|+++
T Consensus 32 ~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~-~~~~~G~~~ 110 (373)
T 1hz4_A 32 EAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE-ILFAQGFLQ 110 (373)
T ss_dssp HHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHTTCHH
T ss_pred HHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH-HHHHCCCHH
Confidence 677777777333343210 1124556666677778888888887776543111 111 11222222 333455588
Q ss_pred HHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHc---CC------CHHHHHHHHHHHHhcCCc
Q 047221 249 GIWRVVEVLNQV----GGS--C-LVSGVRALIEMFSVLGLYEMAKYVIKKT---ER------KVSYYNILIKEMCRRCDF 312 (509)
Q Consensus 249 ~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~------~~~~~~~li~~~~~~g~~ 312 (509)
+|...+++..+. +.. | ....+..+...|...|++++|...+++. .+ ...+|..+...+...|++
T Consensus 111 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 190 (373)
T 1hz4_A 111 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL 190 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH
Confidence 888777776542 221 2 2345566777777888888888777763 11 134566777777788888
Q ss_pred cHHHHHHHHHHHcCCCCCh-HHHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChH
Q 047221 313 KGPRDLLVEMRQVGCEPIT-LTYN-----YVLGVLCKNGQDADACELLEEMLGRNCHP---DAITYEIFIVYSCRVGKFD 383 (509)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~-~t~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~ 383 (509)
++|...+++.....-.++. ..+. ..+..+...|++++|...+++.......+ ....+..+...+...|+++
T Consensus 191 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 270 (373)
T 1hz4_A 191 DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFE 270 (373)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 8888888776643211111 1121 22334667788888888877766543211 1234556667777778888
Q ss_pred HHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 384 VAFNFFNQMVKR----GLQPRL-ATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 384 ~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
+|...+++.... |..++. ..+..+..+|...|+.++|...+++....
T Consensus 271 ~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 271 PAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 888877776532 222222 25555666777778888888877776543
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.11 E-value=3.8e-08 Score=96.03 Aligned_cols=225 Identities=9% Similarity=-0.016 Sum_probs=170.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHc----C--CC-----HHHH
Q 047221 236 LPVLISSKALTKKGIWRVVEVLNQVGG-SC----LVSGVRALIEMFSVLGLYEMAKYVIKKT----E--RK-----VSYY 299 (509)
Q Consensus 236 ll~~~~~~~~~~~~a~~~~~~m~~~g~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~--~~-----~~~~ 299 (509)
....+....|++++|...++...+... .+ ...++..+...|...|+++.|...+++. + .+ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 334344566779999999999876421 12 2456889999999999999999988774 1 12 4578
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHH
Q 047221 300 NILIKEMCRRCDFKGPRDLLVEMRQV----GCE-PITLTYNYVLGVLCKNGQDADACELLEEMLG-----RNCHPDAITY 369 (509)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~ 369 (509)
+.+...|...|++++|++.|++..+. |-. ....++..+...|...|++++|.+.+++..+ . .+....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV-PDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-GGGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC-ChhHHHHH
Confidence 88999999999999999999887653 211 1235778889999999999999999998877 3 22336778
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCC-CHHHHHH
Q 047221 370 EIFIVYSCRVGKFDVAFNFFNQMVKRG----LQPRLATHAAFIKGYFIFYR---YEDAYKYVVLSADKYKSS-SNMLYSL 441 (509)
Q Consensus 370 ~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p-~~~~~~~ 441 (509)
..+...|.+.|++++|...+++..+.. -......+..+-..|...|+ +++|...+++. +..+ ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHH
Confidence 889999999999999999999987642 12224456677777778888 77888887762 2222 2346678
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+...|...|++++|.+.|++..+
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 89999999999999999998864
No 79
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.11 E-value=6.6e-10 Score=103.03 Aligned_cols=222 Identities=14% Similarity=0.062 Sum_probs=151.6
Q ss_pred hcCCHHHHHHHHHHc--------CC----CHHHHHHHHHHHHhcCCccHHHHHHHHHHHc------CC-CCChHHHHHHH
Q 047221 278 VLGLYEMAKYVIKKT--------ER----KVSYYNILIKEMCRRCDFKGPRDLLVEMRQV------GC-EPITLTYNYVL 338 (509)
Q Consensus 278 ~~g~~~~A~~~~~~m--------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~-~p~~~t~~~li 338 (509)
..|++++|...|++. .+ ...+|..+...|...|++++|+..|++..+. +- .....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666552 22 2577888999999999999999999988754 22 22356788899
Q ss_pred HHHHhcCChHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 047221 339 GVLCKNGQDADACELLEEMLGR------NC-HPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR------GLQP-RLATH 404 (509)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~ 404 (509)
..|...|++++|.+.+.+..+. .. +....++..+...|...|++++|...++++.+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999988764 11 223567888889999999999999999988765 1122 35678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHH----C--CCCcC
Q 047221 405 AAFIKGYFIFYRYEDAYKYVVLSADK-------YKSSS-NMLYSLLASLHDKNNNPVMAKNVLSEMMK----N--GLRPN 470 (509)
Q Consensus 405 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~--g~~p~ 470 (509)
..+...|...|++++|..++++..+. ...+. ...|..+...+...+....+.. +..+.. . .....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHH
Confidence 88999999999999999999988753 11222 2233333333333333332222 222211 1 11223
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047221 471 VSVYRRVLKHLHTSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 471 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 500 (509)
..++..+...|...|++++|.+++++..+.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457888889999999999999999987754
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.10 E-value=3.8e-09 Score=111.14 Aligned_cols=161 Identities=11% Similarity=-0.002 Sum_probs=124.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 047221 265 LVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGV 340 (509)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 340 (509)
+..+++.|...|.+.|++++|++.|++. +.+..+|+.+...|.+.|++++|++.|++..+.. +-+...|..+..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3567888888888888888888888774 4557888888888888888888888888877653 3346778888888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047221 341 LCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDA 420 (509)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 420 (509)
|.+.|++++|.+.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. +-+...+..+..+|...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 888888888888888877752 2356778888888888888888888888877653 22567788888888888888888
Q ss_pred HHHHHHHH
Q 047221 421 YKYVVLSA 428 (509)
Q Consensus 421 ~~~~~~m~ 428 (509)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.09 E-value=6.2e-09 Score=109.55 Aligned_cols=166 Identities=10% Similarity=-0.028 Sum_probs=145.0
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047221 295 KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIV 374 (509)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 374 (509)
+..+|+.|...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|.+.|++..+.. +-+...|..+-.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 46789999999999999999999999998763 3457889999999999999999999999998862 235788999999
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH
Q 047221 375 YSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVM 454 (509)
Q Consensus 375 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 454 (509)
+|.+.|++++|++.|++..+.. +-+...|+.+..+|.+.|++++|++.|++..+.. .-+...|..+...|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 9999999999999999998763 3367899999999999999999999999988764 2256788999999999999999
Q ss_pred HHHHHHHHHH
Q 047221 455 AKNVLSEMMK 464 (509)
Q Consensus 455 a~~~~~~m~~ 464 (509)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.08 E-value=2.1e-09 Score=99.54 Aligned_cols=201 Identities=11% Similarity=0.070 Sum_probs=141.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---------C---CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHc-----
Q 047221 263 SCLVSGVRALIEMFSVLGLYEMAKYVIKKT---------E---RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV----- 325 (509)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 325 (509)
+....++..+...|...|++++|...+++. + ....+|..+...|...|++++|++.|++..+.
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 334567888899999999999999888774 1 12567899999999999999999999988754
Q ss_pred -CC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-
Q 047221 326 -GC-EPITLTYNYVLGVLCKNGQDADACELLEEMLGR------NCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKR- 395 (509)
Q Consensus 326 -g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~- 395 (509)
.- +....++..+...|...|++++|...+++..+. +..| ...++..+...|.+.|++++|...+++..+.
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 233677888999999999999999999998765 1123 3567888999999999999999999998753
Q ss_pred ------CCCC-CHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 047221 396 ------GLQP-RLATHAAFIKGYFIFYR------YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 396 ------g~~p-~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 462 (509)
...+ ....|..+...+...+. +..+...++.... .......++..+...|...|++++|.+++++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1122 22233333333333222 2333333322211 11223457888999999999999999999988
Q ss_pred HH
Q 047221 463 MK 464 (509)
Q Consensus 463 ~~ 464 (509)
.+
T Consensus 279 l~ 280 (283)
T 3edt_B 279 SR 280 (283)
T ss_dssp HT
T ss_pred HH
Confidence 75
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.02 E-value=4.6e-08 Score=87.88 Aligned_cols=188 Identities=10% Similarity=-0.088 Sum_probs=118.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHc----C-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHH
Q 047221 265 LVSGVRALIEMFSVLGLYEMAKYVIKKT----E-RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLG 339 (509)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 339 (509)
|...+..+...|...|++++|...|++. + ++...+..+..++...|++++|++.|++..+.. +-+...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4566777777777788888888777764 3 566666667777777788888888777777653 234566777777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 047221 340 VLCKNGQDADACELLEEMLGRNCHPDA-------ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR---LATHAAFIK 409 (509)
Q Consensus 340 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~ 409 (509)
.|...|++++|.+.+++..+.. +.+. ..|..+-..+.+.|++++|...|++..+. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 7777777777777777776642 2233 34666666667777777777777777654 343 345666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 410 GYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+|...|+ .+++++...+ ..+...|.... ....+.+++|+..+++..+
T Consensus 162 ~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 162 LFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh
Confidence 6654432 3334433332 11233333332 2234556777777777766
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.01 E-value=4.5e-08 Score=87.95 Aligned_cols=198 Identities=11% Similarity=-0.073 Sum_probs=151.4
Q ss_pred CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047221 294 RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFI 373 (509)
Q Consensus 294 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 373 (509)
.|...|......+.+.|++++|++.|++..+..-.++...+..+..+|...|++++|.+.|++..+.. +-+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35678888899999999999999999999887633788888889999999999999999999998863 22466788889
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 047221 374 VYSCRVGKFDVAFNFFNQMVKRGLQPRL-------ATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSS---NMLYSLLA 443 (509)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li 443 (509)
..|.+.|++++|...+++..+.. +.+. ..|..+-..+...|++++|.+.|++..+. .|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999988763 2244 45777888889999999999999998776 444 45677777
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 444 SLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
..|... +..+++++...+ ..+...|.... ....+.+++|+..+++..+..+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 777654 344455555542 22344454443 33456789999999998877654
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=1.3e-08 Score=95.55 Aligned_cols=195 Identities=12% Similarity=-0.011 Sum_probs=102.9
Q ss_pred HHHHHhcCCccHHHHHHHHHHHc----CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHH
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQV----GCEPI-TLTYNYVLGVLCKNGQDADACELLEEMLGR----NCHP-DAITYEIF 372 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~l 372 (509)
...|...|++++|.+.|.+..+. |-.++ ..+|+.+..+|.+.|++++|...+++..+. |-.. -..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455566666666666554432 21111 345666666666666666666666655432 1100 02355666
Q ss_pred HHHHHHc-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH------HHHH
Q 047221 373 IVYSCRV-GKFDVAFNFFNQMVKRGLQ-PR----LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN------MLYS 440 (509)
Q Consensus 373 i~~~~~~-g~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~ 440 (509)
...|... |++++|+..|++..+..-. .+ ..+++.+...|.+.|++++|...|++..+....... ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 6666664 7777777766665542100 01 234666666677777777777777766654322211 1455
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCcCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 047221 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNV------SVYRRVLKHLH--TSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 441 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~ll~~~~--~~g~~~~a~~~~~~m~~ 499 (509)
.+..++...|++++|++.|++..+ +.|+. ..+..++.+|. ..+++++|+..++++.+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 566666667777777777766654 22321 12333444443 34556666666655443
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=4.4e-08 Score=79.15 Aligned_cols=130 Identities=10% Similarity=0.069 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047221 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDK 448 (509)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 448 (509)
|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++...+ ..+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3444445555555555555555554432 2234445555555555555555555555554432 1234445555555555
Q ss_pred CCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 449 NNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 449 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
.|++++|.++++++.+.. +.+...+..+...+.+.|++++|...++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 556666665555555431 2234455555555666666666666666555443
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=3.9e-08 Score=79.53 Aligned_cols=124 Identities=12% Similarity=0.167 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 047221 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRV 379 (509)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 379 (509)
..+...+...|++++|.++|+++.+.+ +.+...+..+...+...|++++|.++++++.+.+ +.+...+..+...+.+.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHh
Confidence 334444444444444444444444332 2233334444444444444444444444443321 11233333333444444
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047221 380 GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVL 426 (509)
Q Consensus 380 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 426 (509)
|++++|...++++.+.. +.+...+..+...|.+.|++++|...+++
T Consensus 83 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 44444444444433321 11233333333334444444444444333
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.91 E-value=4.6e-08 Score=91.75 Aligned_cols=204 Identities=9% Similarity=-0.047 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc------CCC----HHHHHHHHHHHHhcCCccHH
Q 047221 246 TKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT------ERK----VSYYNILIKEMCRRCDFKGP 315 (509)
Q Consensus 246 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m------~~~----~~~~~~li~~~~~~g~~~~A 315 (509)
++++|...++.. ...|...|++++|...|++. ..+ ..+|+.+...|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 377777776665 45678889999999888764 112 56888999999999999999
Q ss_pred HHHHHHHHHcCC---CCC--hHHHHHHHHHHHhc-CChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChHH
Q 047221 316 RDLLVEMRQVGC---EPI--TLTYNYVLGVLCKN-GQDADACELLEEMLGR----NCHPD-AITYEIFIVYSCRVGKFDV 384 (509)
Q Consensus 316 ~~~~~~m~~~g~---~p~--~~t~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~ 384 (509)
+..|++..+... .+. ..+++.+...|... |++++|...|++..+. +.... ..+++.+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999987764310 111 45788899999996 9999999999987663 11111 3568888999999999999
Q ss_pred HHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C---CHHHHHHHHHHHH--hCCCh
Q 047221 385 AFNFFNQMVKRGLQPRL------ATHAAFIKGYFIFYRYEDAYKYVVLSADKYKS-S---SNMLYSLLASLHD--KNNNP 452 (509)
Q Consensus 385 a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p---~~~~~~~li~~~~--~~g~~ 452 (509)
|...|++..+....... ..|..+..+|...|++++|...|++..+.... + ....+..++.+|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999876433222 25777888999999999999999987754211 1 1123455666665 45678
Q ss_pred HHHHHHHHHHHH
Q 047221 453 VMAKNVLSEMMK 464 (509)
Q Consensus 453 ~~a~~~~~~m~~ 464 (509)
++|++.|+++..
T Consensus 257 ~~A~~~~~~~~~ 268 (292)
T 1qqe_A 257 SEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTSSC
T ss_pred HHHHHHhccCCc
Confidence 888888877643
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=1.1e-07 Score=88.37 Aligned_cols=180 Identities=11% Similarity=0.047 Sum_probs=123.8
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047221 285 AKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC-EPITLTYNYVLGVLCKNGQDADACELLEEMLG 359 (509)
Q Consensus 285 A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 359 (509)
|...|++. .++..++..+..++...|++++|++++.+....|- .-+...+..++..+.+.|+.+.|.+++++|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 56666664 35566666778888888999999998888765542 13566777888888889999999999988877
Q ss_pred CCCCC-----CHHHHHHHHHHHHH--cC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 360 RNCHP-----DAITYEIFIVYSCR--VG--KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 360 ~g~~p-----~~~~~~~li~~~~~--~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
. .| +..+...|..++.. .| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 45 24555556555332 23 888889999888655 455344444555788889999999888866543
Q ss_pred C---------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHH
Q 047221 431 Y---------KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVS 472 (509)
Q Consensus 431 ~---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 472 (509)
. -.-+..+...+|......|+ +|.++++++.+ ..|+..
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 1 02355566455555556675 78888888887 446544
No 90
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.86 E-value=1.4e-05 Score=83.18 Aligned_cols=155 Identities=12% Similarity=-0.040 Sum_probs=67.7
Q ss_pred hcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCCC------------
Q 047221 343 KNGQDADAC-ELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG---------LQPR------------ 400 (509)
Q Consensus 343 ~~g~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---------~~p~------------ 400 (509)
..|+.++|. ++|++.... ++.+...|-..+....+.|++++|..+|+.+.+.. ..|+
T Consensus 355 ~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~ 433 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKL 433 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccch
Confidence 345555553 555555442 33344444445555555555555555555554320 0121
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhC-CChHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 047221 401 LATHAAFIKGYFIFYRYEDAYKYVVLSADK-YKSSSNMLYSLLASLHDKN-NNPVMAKNVLSEMMKNGLRPNVSVYRRVL 478 (509)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 478 (509)
..+|...+....+.|+++.|..+|.+..+. +.. ....|...+..-.+. ++.+.|.++|+...+. +.-+...+...+
T Consensus 434 ~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~ 511 (679)
T 4e6h_A 434 TYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYL 511 (679)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHH
Confidence 123444455445555555555555555443 111 111121111111122 2355555555555443 222333334444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 047221 479 KHLHTSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 479 ~~~~~~g~~~~a~~~~~~m~~~ 500 (509)
+.....|+.+.|..+|++....
T Consensus 512 ~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 512 DFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHHh
Confidence 4444455555555555554443
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.83 E-value=1e-07 Score=87.57 Aligned_cols=182 Identities=10% Similarity=-0.007 Sum_probs=106.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCC---HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCC-C-CChHHH
Q 047221 264 CLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERK---VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC-E-PITLTY 334 (509)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-p~~~t~ 334 (509)
.+...+..+...+.+.|++++|...|+++ +.+ ...+..+..+|.+.|++++|+..|++..+..- . .....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455666666677777777777777765 223 45666666777777777777777777665421 1 113345
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 047221 335 NYVLGVLCK--------NGQDADACELLEEMLGRNCHPD-AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHA 405 (509)
Q Consensus 335 ~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 405 (509)
..+..++.. .|++++|...|++..+.. |+ .....++.. +..+... -...+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 555566666 666777777776666541 22 111111100 0000000 011135
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhC----------CChHHHHHHHHHHHHC
Q 047221 406 AFIKGYFIFYRYEDAYKYVVLSADKYKSS--SNMLYSLLASLHDKN----------NNPVMAKNVLSEMMKN 465 (509)
Q Consensus 406 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 465 (509)
.+...|.+.|++++|...|+++.+..... ....+..+..+|... |++++|++.|+++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 56777888888888888888877653221 234566677777755 7788888888888763
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=2.1e-07 Score=86.40 Aligned_cols=175 Identities=8% Similarity=-0.074 Sum_probs=124.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-C-----CCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 047221 250 IWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT-E-----RKVSYYNILIKEMCRRCDFKGPRDLLVEMR 323 (509)
Q Consensus 250 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (509)
+...+++..+.+ .++..++..+..+|...|++++|.+++.+. . .+...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666544 455555668888888889999999888875 2 356778888889999999999999999988
Q ss_pred HcCCCC-----ChHHHHHHHHHHH--hcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047221 324 QVGCEP-----ITLTYNYVLGVLC--KNG--QDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVK 394 (509)
Q Consensus 324 ~~g~~p-----~~~t~~~li~~~~--~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 394 (509)
+. .| +..+...|..++. ..| +.++|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 56 3566666666633 233 888999999998765 35533444455578888999999999887654
Q ss_pred C-----C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 395 R-----G----LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 395 ~-----g----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
. . -+-|..+...+|..+...|+ +|.+++.++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 2 0 02356666566666666776 7888888888763
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=3.3e-07 Score=81.10 Aligned_cols=135 Identities=11% Similarity=0.037 Sum_probs=93.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047221 337 VLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416 (509)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 416 (509)
+..+|.+.|++++|...|++..+.. +-+...+..+...|...|++++|...|++..+.. +-+..+|..+..+|...|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence 7778888889999988888887762 3357788888888888899999999998888763 3357778888877766554
Q ss_pred --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHH
Q 047221 417 --YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRV 477 (509)
Q Consensus 417 --~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 477 (509)
.+.+...++.... ..|....+.....++...|++++|++.|++.++ +.|+......+
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l 196 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHH
Confidence 3445555544432 122222344455566678889999999998886 56776544433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.80 E-value=2.4e-07 Score=85.15 Aligned_cols=170 Identities=9% Similarity=-0.030 Sum_probs=116.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHc---CC-C---HHHHHHHHHHHHh--
Q 047221 241 SSKALTKKGIWRVVEVLNQVGGSCL---VSGVRALIEMFSVLGLYEMAKYVIKKT---ER-K---VSYYNILIKEMCR-- 308 (509)
Q Consensus 241 ~~~~~~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m---~~-~---~~~~~~li~~~~~-- 308 (509)
+...|++++|...|+.+.+... .+ ...+..+..+|.+.|++++|...|++. .| + ..++..+..++..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~ 103 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLS 103 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhc
Confidence 3345669999999999988642 23 677889999999999999999999986 23 2 4667788888988
Q ss_pred ------cCCccHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 047221 309 ------RCDFKGPRDLLVEMRQVGCEPIT-LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK 381 (509)
Q Consensus 309 ------~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 381 (509)
.|++++|+..|++..+. .|+. .....+. .+..+... -...+..+...|.+.|+
T Consensus 104 ~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~--------------~~~~~~~~----~~~~~~~la~~~~~~g~ 163 (261)
T 3qky_A 104 PPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQ--------------KIRELRAK----LARKQYEAARLYERREL 163 (261)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHH--------------HHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred ccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHH--------------HHHHHHHH----HHHHHHHHHHHHHHccC
Confidence 99999999999999876 3432 2222211 11111110 01124455667777888
Q ss_pred hHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhCC
Q 047221 382 FDVAFNFFNQMVKRGLQP--RLATHAAFIKGYFIF----------YRYEDAYKYVVLSADKY 431 (509)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~ 431 (509)
+++|...|+++.+..-.. ....+..+..+|... |++++|...|+++.+..
T Consensus 164 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 888888888777652111 234566677777655 77788888888777653
No 95
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.79 E-value=1.1e-06 Score=77.90 Aligned_cols=176 Identities=10% Similarity=0.020 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----ChHHHHHHH
Q 047221 314 GPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG----KFDVAFNFF 389 (509)
Q Consensus 314 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~~~ 389 (509)
+|++.|++..+.| +...+..+-..|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3444555544432 34445555555555555555555555555543 34444444444444 4 555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----CCChHHHHHHHH
Q 047221 390 NQMVKRGLQPRLATHAAFIKGYFI----FYRYEDAYKYVVLSADKYKS-SSNMLYSLLASLHDK----NNNPVMAKNVLS 460 (509)
Q Consensus 390 ~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~ 460 (509)
++..+.| +...+..|-..|.. .+++++|.++|++..+.+.. .+...+..|...|.. .++.++|+++|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 5555544 44455555555544 45556666665555544321 013444455555555 455566666666
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 047221 461 EMMKNGLRPNVSVYRRVLKHLHTS-H-----QEHMAKCLSSRYSSLS 501 (509)
Q Consensus 461 ~m~~~g~~p~~~t~~~ll~~~~~~-g-----~~~~a~~~~~~m~~~~ 501 (509)
+..+. ..+...+..|-..|... | +.++|.+.+++-.+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55554 11223344444444332 2 5566666655555444
No 96
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.77 E-value=2e-05 Score=81.97 Aligned_cols=339 Identities=9% Similarity=-0.000 Sum_probs=224.6
Q ss_pred CCHHHHHHHHHHHhcCC------c----hHHHHHHHh---hcc-CCCCccChhHHHHHHHHHhc---------cCCHHHH
Q 047221 158 LSNASVIEILRVLNSEK------V----SALCFLKYM---REI-MPEFYKNSDICSLVIDNCGR---------LDDYETM 214 (509)
Q Consensus 158 ~~~~~~~~ll~~~~~~~------~----~A~~~~~~~---~~~-~p~~~~~~~~~~~li~~~~~---------~g~~~~A 214 (509)
|+...|..-+.-..+.+ . ...++|+.. .|. .|. +...|...|..... .++++.+
T Consensus 137 ~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~---s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~ 213 (679)
T 4e6h_A 137 NDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPK---SIQFWNEYLHFLEHWKPVNKFEEQQRVQYI 213 (679)
T ss_dssp CCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSS---CHHHHHHHHHHHHTCCCCSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCccccc---chHHHHHHHHHHHhccccCcHHHHhHHHHH
Confidence 78888877776544322 1 245788876 344 443 33478888876542 3457889
Q ss_pred HHHHHHhhhCCCccCHHHHHHHHHHHHhc-------------cCCHHHHHHHHHHHHHc--CC----C-----------C
Q 047221 215 RQLLNDFNVYQVCLNEKAFGFLPVLISSK-------------ALTKKGIWRVVEVLNQV--GG----S-----------C 264 (509)
Q Consensus 215 ~~l~~~m~~~~~~p~~~~~~~ll~~~~~~-------------~~~~~~a~~~~~~m~~~--g~----~-----------~ 264 (509)
..+|++++......-..+|..... +-.. ...++.|...+.++... ++ + |
T Consensus 214 R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p 292 (679)
T 4e6h_A 214 RKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLP 292 (679)
T ss_dssp HHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSC
T ss_pred HHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCC
Confidence 999999875322222344433322 1111 01123344444443321 11 1 1
Q ss_pred -----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHH-HHHHHHHH
Q 047221 265 -----L---VSGVRALIEMFSVLG-------LYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPR-DLLVEMRQ 324 (509)
Q Consensus 265 -----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~ 324 (509)
+ ...|...+..--..+ ..+.+..+|++. +.+...|-..+..+.+.|+.++|. ++|++...
T Consensus 293 ~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~ 372 (679)
T 4e6h_A 293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372 (679)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 0 134555554433322 123344556653 677889999999999999999997 99999886
Q ss_pred cCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHHcCChH
Q 047221 325 VGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRN---------CHPD------------AITYEIFIVYSCRVGKFD 383 (509)
Q Consensus 325 ~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---------~~p~------------~~~~~~li~~~~~~g~~~ 383 (509)
. ++.+...|-..+...-+.|+++.|.++|+.+.+.. ..|+ ...|...+....+.|..+
T Consensus 373 ~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~ 451 (679)
T 4e6h_A 373 C-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLA 451 (679)
T ss_dssp H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred h-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHH
Confidence 4 34566667788888899999999999999988641 0132 236888888888899999
Q ss_pred HHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 047221 384 VAFNFFNQMVKR-G-LQPRLATHAAFIKGYFIF-YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLS 460 (509)
Q Consensus 384 ~a~~~~~~m~~~-g-~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 460 (509)
.|..+|....+. + ..+......+.+. .+. ++.+.|.++|+...+. ..-+...|...+......|+.+.|..+|+
T Consensus 452 ~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lfe 528 (679)
T 4e6h_A 452 ASRKIFGKCRRLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFE 528 (679)
T ss_dssp HHHHHHHHHHHTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999876 3 2233333333333 344 4589999999988876 33456677788888888999999999999
Q ss_pred HHHHCCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047221 461 EMMKNGLRP--NVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGS 504 (509)
Q Consensus 461 ~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 504 (509)
+.......+ ....|...+..-.+.|+.+.+..+.+++.+.-++.
T Consensus 529 ral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 529 SSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 998754322 33578888877789999999999999999877654
No 97
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=7.8e-07 Score=78.94 Aligned_cols=163 Identities=9% Similarity=-0.010 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCCHHHHH
Q 047221 295 KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG----QDADACELLEEMLGRNCHPDAITYE 370 (509)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~~~~ 370 (509)
+..++..|...|...+++++|++.|++..+.| +...+..|-..|.. + ++++|.+.|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444444444444555555555555554433 33444444444444 4 5555555555555543 344444
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047221 371 IFIVYSCR----VGKFDVAFNFFNQMVKRGLQ-PRLATHAAFIKGYFI----FYRYEDAYKYVVLSADKYKSSSNMLYSL 441 (509)
Q Consensus 371 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 441 (509)
.|-..|.. .+++++|..+|++..+.|.. .+...+..|-..|.. .++.++|...|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 55455544 45666666666665554311 014555555555655 556666666666655541 12233444
Q ss_pred HHHHHHhC-C-----ChHHHHHHHHHHHHCC
Q 047221 442 LASLHDKN-N-----NPVMAKNVLSEMMKNG 466 (509)
Q Consensus 442 li~~~~~~-g-----~~~~a~~~~~~m~~~g 466 (509)
|...|... | +.++|++.|++..+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 55555432 2 5666666666665554
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.71 E-value=1.9e-06 Score=77.12 Aligned_cols=189 Identities=12% Similarity=0.014 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCC-C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCH-HHHH
Q 047221 295 KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCE-P-ITLTYNYVLGVLCKNGQDADACELLEEMLGRNCH-PDA-ITYE 370 (509)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~-~~~~ 370 (509)
+...+..+...+.+.|++++|+..|+++.+..-. | ....+..+..+|.+.|++++|...|++..+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778888999999999999998875311 1 1356778888899999999999999998875221 111 2343
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 371 IFIVYSCR------------------VGKFDVAFNFFNQMVKRGLQPR-LATHAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 371 ~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
.+..++.+ .|+.++|...|+++.+. .|+ ...+.+....- .+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHHH---
Confidence 44444443 35566666666666654 222 11221111100 0000000
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047221 432 KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN----VSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSS 505 (509)
Q Consensus 432 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~ 505 (509)
.....+...|.+.|++++|+..|+++++. .|+ ...+..+..++.+.|++++|.+.++.+...+++..
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 01124667788999999999999999874 343 24678888899999999999999999988876543
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.70 E-value=3.5e-07 Score=86.34 Aligned_cols=193 Identities=12% Similarity=-0.030 Sum_probs=115.2
Q ss_pred cCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047221 208 LDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKY 287 (509)
Q Consensus 208 ~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (509)
.|++++|.+++++..+..- . .++...+++++|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~--~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK--T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC--C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc--c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4667777777776644311 0 0222134466666665543 456777888888888
Q ss_pred HHHHc------CCC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHc----CCCCC--hHHHHHHHHHHHhcCChHHHH
Q 047221 288 VIKKT------ERK----VSYYNILIKEMCRRCDFKGPRDLLVEMRQV----GCEPI--TLTYNYVLGVLCKNGQDADAC 351 (509)
Q Consensus 288 ~~~~m------~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~g~~~~a~ 351 (509)
.|.+. ..+ ..+|+.+...|.+.|++++|+..|++..+. | .+. ..++..+...|.. |++++|.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 77764 111 456777777888888888888888766532 2 121 3456666666766 7777777
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 047221 352 ELLEEMLGR----NCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKR----GLQPR-LATHAAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 352 ~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~ 421 (509)
..|++..+. |... ...+++.+...|.+.|++++|...|++..+. +..+. ...+..+..++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777766543 1100 0345666666777777777777777766542 11111 124555555666667777777
Q ss_pred HHHHHHH
Q 047221 422 KYVVLSA 428 (509)
Q Consensus 422 ~~~~~m~ 428 (509)
..|++..
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7776665
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.69 E-value=3.3e-07 Score=78.71 Aligned_cols=77 Identities=6% Similarity=-0.022 Sum_probs=38.4
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 047221 385 AFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSS-SNMLYSLLASLHDKNNNPVMAKNVLSEM 462 (509)
Q Consensus 385 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 462 (509)
|...+++..+.. +-+...+..+..+|...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++.
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 444454444431 1134555555555555555555555555555443222 2334555555555555555555555544
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.68 E-value=8.6e-07 Score=82.77 Aligned_cols=160 Identities=9% Similarity=-0.006 Sum_probs=76.0
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHH
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIF-IVYSC 377 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~ 377 (509)
+..+...+.+.|++++|+..|++..+.. +-+...+..+...|.+.|++++|...+++.... .|+....... ...+.
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHH
Confidence 3344444444555555555555544432 223344445555555555555555555544433 2232221111 12234
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCChHHHH
Q 047221 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSS-SNMLYSLLASLHDKNNNPVMAK 456 (509)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~ 456 (509)
+.++.++|...+++..+.. +.+...+..+...|...|++++|...|.++.+..... +...+..++..|...|+.++|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 4445555555555555442 2244555555555555555555555555555442211 1344555555555556555555
Q ss_pred HHHHHH
Q 047221 457 NVLSEM 462 (509)
Q Consensus 457 ~~~~~m 462 (509)
..|++.
T Consensus 276 ~~~r~a 281 (287)
T 3qou_A 276 SXYRRQ 281 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=6e-07 Score=77.03 Aligned_cols=157 Identities=12% Similarity=0.026 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHH-HHh
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGV-LCK 343 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~ 343 (509)
+..+...+...|++++|...|++. +.+...|..+...+.+.|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 345666777788888888888775 4567778888888888888888888887776542 343333222111 122
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 047221 344 NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP-RLATHAAFIKGYFIFYRYEDAYK 422 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~ 422 (509)
.+...+|...+++..+.. +-+...+..+...+.+.|++++|...|+++.+..-.+ +...+..+...|...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 223334677777776642 2256777778888888888888888888887664322 35577778888888888888888
Q ss_pred HHHHHH
Q 047221 423 YVVLSA 428 (509)
Q Consensus 423 ~~~~m~ 428 (509)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.65 E-value=1.4e-06 Score=76.97 Aligned_cols=160 Identities=12% Similarity=0.015 Sum_probs=93.4
Q ss_pred HHHHHhcCCHHHHHHHHHHc---CC-CHHHHHH----------------HHHHHHhcCCccHHHHHHHHHHHcCCCCChH
Q 047221 273 IEMFSVLGLYEMAKYVIKKT---ER-KVSYYNI----------------LIKEMCRRCDFKGPRDLLVEMRQVGCEPITL 332 (509)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m---~~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 332 (509)
...+...|++++|...|++. .| +...|.. +...|.+.|++++|+..|++..+.. +-+..
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 89 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVD 89 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHH
Confidence 33444555555555555553 22 2334444 6777777777788877777777653 34566
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGK--FDVAFNFFNQMVKRGLQPRLATHAAFIKG 410 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (509)
.+..+..+|...|++++|...|++..+.. +-+...|..+...|...|+ .+.+...++.... ..|....+..+-.+
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHH
Confidence 77777777777788888888877777652 2345666666666654443 3344444444321 12222233334445
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047221 411 YFIFYRYEDAYKYVVLSADKYKSSSNML 438 (509)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 438 (509)
+...|++++|...|++..+. .|+...
T Consensus 167 ~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 56677788888888777654 455443
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.65 E-value=1.9e-06 Score=77.22 Aligned_cols=103 Identities=11% Similarity=0.015 Sum_probs=62.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047221 343 KNGQDADACELLEEMLGRNCHPD-AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 421 (509)
..|+.++|...|+++.+. .|+ ...+.+.... + .+...+. ...-.+...|.+.|++++|.
T Consensus 108 ~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----~------~~~~~~~--------~~~~~~a~~~~~~~~~~~A~ 167 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----V------FLKDRLA--------KYEYSVAEYYTERGAWVAVV 167 (225)
T ss_dssp CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----H------HHHHHHH--------HHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----H------HHHHHHH--------HHHHHHHHHHHHcCcHHHHH
Confidence 467888999999888876 233 2222221110 0 0001110 11234566777888888888
Q ss_pred HHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 422 KYVVLSADKYKSSS--NMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 422 ~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
..|+++.+...... ...+..+..+|.+.|+.++|++.++.+...
T Consensus 168 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 168 NRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 88888776532211 245677788888888888888888877764
No 105
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.64 E-value=5.9e-07 Score=94.64 Aligned_cols=169 Identities=7% Similarity=-0.132 Sum_probs=136.5
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhc
Q 047221 242 SKALTKKGIWRVVEVLN--------QVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRR 309 (509)
Q Consensus 242 ~~~~~~~~a~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~ 309 (509)
...++.++|.+.++... +. .+.+...+..+..+|...|++++|...|++. +.+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45566999999999987 32 2456678889999999999999999999886 56788999999999999
Q ss_pred CCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 047221 310 CDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFF 389 (509)
Q Consensus 310 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 389 (509)
|++++|++.|++..+.. +-+...|..+..+|.+.|++++ .+.|++..+.. +-+...|..+..++.+.|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988764 3467788899999999999999 99999988763 336778889999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 047221 390 NQMVKRGLQPR-LATHAAFIKGYFIFYR 416 (509)
Q Consensus 390 ~~m~~~g~~p~-~~~~~~li~~~~~~g~ 416 (509)
++..+. .|+ ...+..+..++...|+
T Consensus 558 ~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence 988754 454 5677777777766554
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=3.5e-05 Score=71.98 Aligned_cols=217 Identities=9% Similarity=-0.001 Sum_probs=125.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHc----CCCHHHHHHHHHHH----Hhc---C
Q 047221 244 ALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLG--LYEMAKYVIKKT----ERKVSYYNILIKEM----CRR---C 310 (509)
Q Consensus 244 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m----~~~~~~~~~li~~~----~~~---g 310 (509)
+...++|+.+.+.+...+ +-+..+|+.--..+...| +++++..+++.+ +.+..+|+.--..+ ... +
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccC
Confidence 333455666666665544 223444555555555555 666666666654 34445555433333 333 5
Q ss_pred CccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------h
Q 047221 311 DFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDA--DACELLEEMLGRNCHPDAITYEIFIVYSCRVGK------F 382 (509)
Q Consensus 311 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~ 382 (509)
++++++++++++.+.. +-+-.+|+.-.-.+.+.|.++ ++++.++.+.+.. +-|...|+--...+.+.++ +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 6667777777666554 445666666666666666666 6677777666653 2355555555444445454 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCChHHHHHHH
Q 047221 383 DVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED-AYKYVVLSADKY--KSSSNMLYSLLASLHDKNNNPVMAKNVL 459 (509)
Q Consensus 383 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~ 459 (509)
+++++.+++++... +-|...|+-+-..+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|++++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 67777777666653 3366667766666666666333 444554444322 1335566677777777777777777777
Q ss_pred HHHHH
Q 047221 460 SEMMK 464 (509)
Q Consensus 460 ~~m~~ 464 (509)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77765
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.63 E-value=9.9e-07 Score=82.34 Aligned_cols=145 Identities=15% Similarity=0.053 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc---CCCHHHHH-HHHHHHHhcCCccHHHHHHH
Q 047221 245 LTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT---ERKVSYYN-ILIKEMCRRCDFKGPRDLLV 320 (509)
Q Consensus 245 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~-~li~~~~~~g~~~~A~~~~~ 320 (509)
|+.++|...++...+.. +-+...+..+...|.+.|++++|...++++ .|+..... .....+.+.++.++|++.|+
T Consensus 131 g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~ 209 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQ 209 (287)
T ss_dssp TCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence 33555555555544432 223344444555555555555555555443 12222111 11122334444444444444
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 047221 321 EMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCH-PDAITYEIFIVYSCRVGKFDVAFNFFNQ 391 (509)
Q Consensus 321 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~ 391 (509)
+..+.. +.+...+..+...|...|++++|...|.++.+..-. .+...+..+...+...|+.++|...|++
T Consensus 210 ~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 210 QQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 444432 223444444444445555555555555444443111 0133444444444444444444444443
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.63 E-value=6.4e-07 Score=94.38 Aligned_cols=173 Identities=14% Similarity=-0.022 Sum_probs=121.0
Q ss_pred HhcCCccHHHHHHHHHH--------HcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047221 307 CRRCDFKGPRDLLVEMR--------QVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR 378 (509)
Q Consensus 307 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 378 (509)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|.+.|++..+.. +-+...|..+-.+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 66788888888888776 322 3345677777778888888888888888877652 2356677777778888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 047221 379 VGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNV 458 (509)
Q Consensus 379 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 458 (509)
.|++++|...|++..+.. +-+...|..+..+|.+.|++++ .+.|++..+.+ .-+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888877653 2256677778888888888888 88888777653 22556777788888888888888888
Q ss_pred HHHHHHCCCCcCH-HHHHHHHHHHHhcCC
Q 047221 459 LSEMMKNGLRPNV-SVYRRVLKHLHTSHQ 486 (509)
Q Consensus 459 ~~~m~~~g~~p~~-~t~~~ll~~~~~~g~ 486 (509)
|++..+ +.|+. ..+..+..++...|+
T Consensus 557 ~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 887765 44553 455555556544443
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.61 E-value=1.4e-06 Score=89.92 Aligned_cols=154 Identities=6% Similarity=-0.109 Sum_probs=116.1
Q ss_pred cCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 047221 309 RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNF 388 (509)
Q Consensus 309 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 388 (509)
.|++++|++.|++..+.. +-+...|..+...|...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999888653 3457888999999999999999999999998863 34578899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CChHHHHHHHHHHHHC
Q 047221 389 FNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKN---NNPVMAKNVLSEMMKN 465 (509)
Q Consensus 389 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 465 (509)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+... .+...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988763 33678899999999999999999999999887642 3567788899999999 9999999999999875
Q ss_pred C
Q 047221 466 G 466 (509)
Q Consensus 466 g 466 (509)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 3
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.61 E-value=2.7e-05 Score=72.80 Aligned_cols=219 Identities=10% Similarity=0.049 Sum_probs=172.1
Q ss_pred CCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHcCCCCChHHHHHHHHHH----Hhc---CC
Q 047221 280 GLYEMAKYVIKKT----ERKVSYYNILIKEMCRRC--DFKGPRDLLVEMRQVGCEPITLTYNYVLGVL----CKN---GQ 346 (509)
Q Consensus 280 g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~----~~~---g~ 346 (509)
..-++|..+++.+ +.+..+||.--..+...| +++++++.++.+.... +-+..+|+.--..+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 4446888888875 556888999888888888 9999999999999764 44555665544444 455 78
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HH
Q 047221 347 DADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFD--VAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR------YE 418 (509)
Q Consensus 347 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~ 418 (509)
+++++++++.+.+. -+-+..+|+--.-.+.+.|+++ ++++.++++.+.. .-|-..|+.-.....+.|. ++
T Consensus 126 ~~~EL~~~~~~l~~-~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSS-DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999986 3457888888888888889888 9999999999875 3377888877777777776 89
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH-HHHHHHHHHHCC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047221 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVM-AKNVLSEMMKNG--LRPNVSVYRRVLKHLHTSHQEHMAKCLSS 495 (509)
Q Consensus 419 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 495 (509)
++++.++++.... .-|...|+.+-..+.+.|+..+ +.++.+++.+.+ -..+...+..+...|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999888765 3488889999999999988555 556777665532 13466788899999999999999999999
Q ss_pred HHHh-CCC
Q 047221 496 RYSS-LSL 502 (509)
Q Consensus 496 ~m~~-~~~ 502 (509)
.+.+ .++
T Consensus 283 ~l~~~~Dp 290 (306)
T 3dra_A 283 LLKSKYNP 290 (306)
T ss_dssp HHHHTTCG
T ss_pred HHHhccCh
Confidence 9985 443
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.60 E-value=1.1e-06 Score=90.55 Aligned_cols=149 Identities=9% Similarity=-0.037 Sum_probs=107.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHH
Q 047221 245 LTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLV 320 (509)
Q Consensus 245 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 320 (509)
++.++|...+++..+.. +.+...+..+...|.+.|++++|...|++. +.+...|..+...|.+.|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45788888888877643 345677888888999999999999988885 4567888888889999999999999998
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CChHHHHHHHHHHHHCC
Q 047221 321 EMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRV---GKFDVAFNFFNQMVKRG 396 (509)
Q Consensus 321 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~g 396 (509)
+..+.. +.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+.+. |+.++|.+.+++..+.+
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 888764 4456788888888999999999999998887762 33567788888888888 88999999998887764
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=1.2e-06 Score=82.65 Aligned_cols=210 Identities=9% Similarity=0.003 Sum_probs=148.3
Q ss_pred cCCHHHHHHHHHHc----C-------CC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCC---CC--ChHHHHHHH
Q 047221 279 LGLYEMAKYVIKKT----E-------RK----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC---EP--ITLTYNYVL 338 (509)
Q Consensus 279 ~g~~~~A~~~~~~m----~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~t~~~li 338 (509)
.|++++|.+++++. + ++ ...|+.....|...|++++|.+.|.+..+... .+ -..+|+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788888888753 1 23 34678888889999999999999988764311 11 145788888
Q ss_pred HHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHH
Q 047221 339 GVLCKNGQDADACELLEEMLGR----NCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKR----GLQP-RLATHAAFI 408 (509)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li 408 (509)
..|.+.|++++|...|++..+. |-.. -..+++.+-..|.+ |++++|+..|++..+. |... ...+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8999999999999999876543 2111 13467777888878 9999999999987653 2111 145788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcC------HHHHHHH
Q 047221 409 KGYFIFYRYEDAYKYVVLSADK----YKSSS-NMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN------VSVYRRV 477 (509)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~t~~~l 477 (509)
..|.+.|++++|...|++..+. +..+. ...+..++..+...|++++|++.|++.. . .|+ ......+
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l 239 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDL 239 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHH
Confidence 9999999999999999987753 21111 2256667777788899999999999987 3 232 1234555
Q ss_pred HHHHHhcCCHHHHHHH
Q 047221 478 LKHLHTSHQEHMAKCL 493 (509)
Q Consensus 478 l~~~~~~g~~~~a~~~ 493 (509)
+.++ ..|+.+.+.++
T Consensus 240 ~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 240 LQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHH-HTTCHHHHHHH
T ss_pred HHHH-HhcCHHHHHHH
Confidence 5555 56777776664
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=4.2e-06 Score=73.82 Aligned_cols=126 Identities=6% Similarity=-0.140 Sum_probs=94.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCh
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT-ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQD 347 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 347 (509)
+..+...|...|++++|...|++. +++...|..+...|.+.|++++|++.|++..+.. +.+...|..+..+|...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 456667777888888888888875 5677788888888888888888888888877654 44567777888888888888
Q ss_pred HHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047221 348 ADACELLEEMLGRNCH--------------P-DAITYEIFIVYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 348 ~~a~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
++|.+.|++..+..-. | ....+..+..+|.+.|++++|...|++..+.
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888887764211 1 1256777777788888888888888887765
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.57 E-value=3.7e-07 Score=76.11 Aligned_cols=141 Identities=10% Similarity=-0.098 Sum_probs=77.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHcC----CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCh
Q 047221 272 LIEMFSVLGLYEMAKYVIKKTE----RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQD 347 (509)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 347 (509)
|..++...|+++.|...+++.- .+...+-.+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3344455566666666666542 123445556666666666666666666666543 33455666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047221 348 ADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNF-FNQMVKRGLQPRLATHAAFIKGYFIFY 415 (509)
Q Consensus 348 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g 415 (509)
++|...|++..+.. +-+...|..+...|.+.|+.++|... +++..+.. +-+..+|......+...|
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 66666666666541 22355566666666666666554443 35554431 223445554444444444
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.51 E-value=5.8e-06 Score=72.88 Aligned_cols=133 Identities=10% Similarity=-0.010 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (509)
..+..+...+...|++++|...|++.. .|+...|..+...|.+.|++++|...|++..+.. +.+...|..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345667778889999999999998763 5688899999999999999999999999988764 44678889999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCH
Q 047221 412 FIFYRYEDAYKYVVLSADKYKSSS---------------NMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV 471 (509)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~p~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 471 (509)
...|++++|.+.|++..+...... ...|..+...|.+.|++++|.+.|++..+ +.|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS--MKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCccc
Confidence 999999999999999887642211 25778889999999999999999999887 44554
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=6.3e-06 Score=77.04 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=72.8
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcC-CCCCh----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVG-CEPIT----LTYNYVLGVLCKNGQDADACELLEEMLGRNCH-PD----AITYEIF 372 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~~----~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~~l 372 (509)
+..+...|++++|.+++++..+.. ..|+. ..+..+...+...|++++|...|.+..+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 455666666666666666655431 11221 12223444444555566666666555542111 11 1245555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 047221 373 IVYSCRVGKFDVAFNFFNQMVKR-----GLQPR-LATHAAFIKGYFIFYRYEDAYKYVVLSADK----YKSSS-NMLYSL 441 (509)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~ 441 (509)
...|...|++++|...|+++.+. +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 55555555555555555555421 11111 123444555555555555555555443321 11111 334444
Q ss_pred HHHHHHhCCC-hHHHHHHHHHH
Q 047221 442 LASLHDKNNN-PVMAKNVLSEM 462 (509)
Q Consensus 442 li~~~~~~g~-~~~a~~~~~~m 462 (509)
+...|.+.|+ +++|.+.+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 4444444442 34555444443
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.51 E-value=1.3e-05 Score=74.79 Aligned_cols=159 Identities=8% Similarity=-0.033 Sum_probs=120.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHc---CC---C----HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCC-CC----hHHH
Q 047221 270 RALIEMFSVLGLYEMAKYVIKKT---ER---K----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCE-PI----TLTY 334 (509)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m---~~---~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~ 334 (509)
...+..+...|++++|..++++. .+ + ...+..+...+...|++++|++.|++..+.... ++ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 34467788899999999999885 11 1 123445667777788999999999999874322 23 2368
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHH
Q 047221 335 NYVLGVLCKNGQDADACELLEEMLGR-----NCHPD-AITYEIFIVYSCRVGKFDVAFNFFNQMVKR----GLQPR-LAT 403 (509)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~ 403 (509)
+.+...|...|++++|...|++..+. +..+. ..+|..+...|.+.|++++|...+++..+. +..+. ..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 99999999999999999999988741 22222 337888999999999999999999987643 32233 678
Q ss_pred HHHHHHHHHHcC-CHHHHHHHHHHHH
Q 047221 404 HAAFIKGYFIFY-RYEDAYKYVVLSA 428 (509)
Q Consensus 404 ~~~li~~~~~~g-~~~~A~~~~~~m~ 428 (509)
|..+..+|.+.| ..++|.+.+++..
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 899999999999 5699999887765
No 118
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=1.5e-05 Score=74.34 Aligned_cols=168 Identities=11% Similarity=0.061 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCC--H
Q 047221 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI-----TLTYNYVLGVLCKNGQDADACELLEEMLGRN---CHPD--A 366 (509)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~ 366 (509)
..+...+..+...|++++|.+.+.+..+..-..+ ...+..+...+...|++++|...+.+..+.. ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455667778888888888888887776532211 1223445566778889999999998877532 1122 4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-C
Q 047221 367 ITYEIFIVYSCRVGKFDVAFNFFNQMVK---R-GLQP--RLATHAAFIKGYFIFYRYEDAYKYVVLSADK----YKSS-S 435 (509)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~ 435 (509)
.+|+.+...|...|++++|...|++..+ . +-.+ ...+++.+..+|.+.|++++|...+++..+. +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5788888899999999999999988762 2 1111 1257888899999999999999999876543 1111 1
Q ss_pred HHHHHHHHHHHHhCCChHHH-HHHHHHHHH
Q 047221 436 NMLYSLLASLHDKNNNPVMA-KNVLSEMMK 464 (509)
Q Consensus 436 ~~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 464 (509)
..+|..+...|.+.|+.++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788899999999999999 777777653
No 119
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.48 E-value=3e-06 Score=70.47 Aligned_cols=110 Identities=10% Similarity=-0.022 Sum_probs=48.4
Q ss_pred HhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047221 205 CGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEM 284 (509)
Q Consensus 205 ~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (509)
+...|++++|+..++.... ..|+.......+..++...+++++|...++...+.. +-+..+|..+..+|.+.|++++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 3344555555555554422 223222222222222333333555555555544432 2234445555555555555555
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHH
Q 047221 285 AKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRD 317 (509)
Q Consensus 285 A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~ 317 (509)
|...|++. +.+..+|..+...|.+.|++++|.+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~ 120 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK 120 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 55555443 2334445555555555555444333
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.45 E-value=1.9e-05 Score=73.66 Aligned_cols=167 Identities=8% Similarity=-0.032 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--H
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDA-----ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGL---QPR--L 401 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---~p~--~ 401 (509)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455677889999999999999988775322111 2234455667788999999999999875421 222 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCc-C
Q 047221 402 ATHAAFIKGYFIFYRYEDAYKYVVLSAD---K-YKSS--SNMLYSLLASLHDKNNNPVMAKNVLSEMMKN----GLRP-N 470 (509)
Q Consensus 402 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~-~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~ 470 (509)
.+|+.+...|...|++++|...|++..+ . +..+ ...+|..+...|.+.|++++|++.+++..+. +... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5889999999999999999999998873 2 1111 1258889999999999999999999988753 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 047221 471 VSVYRRVLKHLHTSHQEHMA-KCLSSRYS 498 (509)
Q Consensus 471 ~~t~~~ll~~~~~~g~~~~a-~~~~~~m~ 498 (509)
..+|..+...|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788889999999999999 77676644
No 121
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=1.1e-05 Score=63.78 Aligned_cols=93 Identities=12% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR 378 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 378 (509)
|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...|.+
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 2233344444444444444444444444443321 1233344444444444
Q ss_pred cCChHHHHHHHHHHH
Q 047221 379 VGKFDVAFNFFNQMV 393 (509)
Q Consensus 379 ~g~~~~a~~~~~~m~ 393 (509)
.|++++|...++++.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444443
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.43 E-value=9.6e-06 Score=68.05 Aligned_cols=126 Identities=10% Similarity=0.001 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR 378 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 378 (509)
|..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.. +.+...|..+..++.+
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3444444444444444544444444332 2234444444455555555555555555444431 2234445555555555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHH
Q 047221 379 VGKFDVAFNFFNQMVKRGLQPRLATH--AAFIKGYFIFYRYEDAYKYVVLS 427 (509)
Q Consensus 379 ~g~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m 427 (509)
.|++++|...|++..+.. +.+...+ -.+...+.+.|++++|...+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 555555555555554432 1122233 22222244455555555555443
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.42 E-value=1.2e-05 Score=67.53 Aligned_cols=129 Identities=9% Similarity=-0.075 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (509)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344555556666666666666666655542 2245556666666666666666666666665542 23455566666666
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhCCChHHHHHHHHHHH
Q 047221 412 FIFYRYEDAYKYVVLSADKYKSSSNMLYS--LLASLHDKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~ 463 (509)
...|++++|...|++..+... .+...+. .++..+...|++++|++.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 666666666666666655422 1223332 22223555566666666665543
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.41 E-value=1.2e-05 Score=63.49 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 047221 266 VSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVL 341 (509)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 341 (509)
...+..+...|...|++++|...|+++ +.+..+|..+...+.+.|++++|...|+++.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 456777788888888888888888775 4567788888888888888888888888887764 44677788888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047221 342 CKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR 378 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 378 (509)
...|++++|...++++.+.. +.+...+..+...+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 88899999988888887652 2344555555444443
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.40 E-value=0.001 Score=66.83 Aligned_cols=325 Identities=6% Similarity=-0.034 Sum_probs=194.9
Q ss_pred CCCCHHHHHHHHHHHhcCCc---hHHHHHHHh-hccCCCCccChhHHHHHHHHHhc----cCCHHHHHHHHHHhhhCCCc
Q 047221 156 VSLSNASVIEILRVLNSEKV---SALCFLKYM-REIMPEFYKNSDICSLVIDNCGR----LDDYETMRQLLNDFNVYQVC 227 (509)
Q Consensus 156 ~~~~~~~~~~ll~~~~~~~~---~A~~~~~~~-~~~~p~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~ 227 (509)
..|+...|..-++...+.+. ....+|+.+ ..+.++. .+...|...+..+.. .++.+.+.++|++.......
T Consensus 43 ~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~-~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~ 121 (493)
T 2uy1_A 43 KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYW-DSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG 121 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCT-TCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT
T ss_pred cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCc-ccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh
Confidence 34788888888887766552 567788877 3222222 234588888877653 46788999999999874322
Q ss_pred cCHHHHHHHHHHHHhccC-------------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C-----HHHHHH
Q 047221 228 LNEKAFGFLPVLISSKAL-------------TKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLG--L-----YEMAKY 287 (509)
Q Consensus 228 p~~~~~~~ll~~~~~~~~-------------~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~ 287 (509)
--...|..... +-...+ .+..|..+++.+...-...+...|...+..-...+ - .+.+..
T Consensus 122 ~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 122 SLSELWKDFEN-FELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp THHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHH-HHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 12233333322 111111 12233334443332100012334555444432211 1 234556
Q ss_pred HHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--
Q 047221 288 VIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRN-- 361 (509)
Q Consensus 288 ~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g-- 361 (509)
+|++. +.+...|-..+.-+.+.|+.++|.++|++.... |....... .|+...+.++. ++.+.+.-
T Consensus 201 ~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 201 IHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHh
Confidence 77664 567888998899899999999999999999987 44332221 23332222222 22222210
Q ss_pred -------CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC
Q 047221 362 -------CHP---DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF-YRYEDAYKYVVLSADK 430 (509)
Q Consensus 362 -------~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 430 (509)
..+ ....|...+..+.+.+..+.|..+|+.. +.. ..+...|......-... ++.+.|..+|+...+.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 011 1245666677777788899999999998 321 23444554322222223 3699999999988775
Q ss_pred CCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 431 YKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 431 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
.. -+...|...+....+.|+.+.|..+|+++. -....|...+.-=...|+.+.+..++++..+
T Consensus 350 ~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 350 HP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 234456667777788999999999999973 2456777777766778999999998887763
No 126
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.40 E-value=3.2e-06 Score=73.80 Aligned_cols=156 Identities=11% Similarity=-0.029 Sum_probs=94.8
Q ss_pred HhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCC
Q 047221 307 CRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR----NCHP-DAITYEIFIVYSCRVGK 381 (509)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~ 381 (509)
...|++++|.+.++.+... ......++..+...|...|++++|...+++..+. |..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567788888855544331 1234566777777778888888888887776552 2122 23456666777777888
Q ss_pred hHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhCC
Q 047221 382 FDVAFNFFNQMVKR----GLQP--RLATHAAFIKGYFIFYRYEDAYKYVVLSADK----YKS-SSNMLYSLLASLHDKNN 450 (509)
Q Consensus 382 ~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g 450 (509)
+++|...+++..+. +-.+ ....+..+...|...|++++|...+++..+. +.. ....++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888877766543 2111 1344666777777778888887777766532 111 01223566667777777
Q ss_pred ChHHHHHHHHHHH
Q 047221 451 NPVMAKNVLSEMM 463 (509)
Q Consensus 451 ~~~~a~~~~~~m~ 463 (509)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7777777776654
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.39 E-value=4.2e-06 Score=76.56 Aligned_cols=186 Identities=12% Similarity=-0.035 Sum_probs=121.5
Q ss_pred hcCCHHHHHHHHHHc----CCCHHHHHHH-------HHHHHhcCCccHHHHHHHHHHHcCCCCC----------------
Q 047221 278 VLGLYEMAKYVIKKT----ERKVSYYNIL-------IKEMCRRCDFKGPRDLLVEMRQVGCEPI---------------- 330 (509)
Q Consensus 278 ~~g~~~~A~~~~~~m----~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~---------------- 330 (509)
..++.+.|.+.|.+. +.....|+.+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 578888888888886 4457788877 4666666666666665555443 1221
Q ss_pred ------hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HH
Q 047221 331 ------TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR--LA 402 (509)
Q Consensus 331 ------~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~ 402 (509)
...+-.....+...|++++|.++|+.+...+ |+......+-..+.+.+++++|+..|+...... .|. ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 1223345566777888888888888777653 443354455557778888888888887543321 111 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcC
Q 047221 403 THAAFIKGYFIFYRYEDAYKYVVLSADKYKSSS--NMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPN 470 (509)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 470 (509)
.+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.. ..|+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 566677778888888888888887765433243 23455567777788888888888888877 3455
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=2.6e-05 Score=71.34 Aligned_cols=185 Identities=5% Similarity=-0.146 Sum_probs=109.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHc---CC-------C----------
Q 047221 243 KALTKKGIWRVVEVLNQVGGSCLVSGVRAL-------IEMFSVLGLYEMAKYVIKKT---ER-------K---------- 295 (509)
Q Consensus 243 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m---~~-------~---------- 295 (509)
..++...|.+.|.+..+.. +-....|..+ ...+.+.++..++...+++- .| +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 3555777777777777654 3344556555 34455444445554444431 11 1
Q ss_pred -----HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHH
Q 047221 296 -----VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD--AIT 368 (509)
Q Consensus 296 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~ 368 (509)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1223445666777777777777777766543 443355555556777777777777776444331 111 224
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR--LATHAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
+..+-.++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55666677777777777777777764433243 2345556666777777777777777777653
No 129
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.37 E-value=2.5e-06 Score=74.55 Aligned_cols=152 Identities=12% Similarity=-0.070 Sum_probs=96.0
Q ss_pred hcCCHHHHHH---HHHHcC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHc----CCC-CChHHHHHHHHHHHhcCChH
Q 047221 278 VLGLYEMAKY---VIKKTE-RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV----GCE-PITLTYNYVLGVLCKNGQDA 348 (509)
Q Consensus 278 ~~g~~~~A~~---~~~~m~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~ 348 (509)
..|++++|.+ ++..-+ ....+++.+...|...|++++|...+++..+. |.. ....++..+...|...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 333322 23456666777777777777777777665541 111 22456677777788888888
Q ss_pred HHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCH
Q 047221 349 DACELLEEMLGR----NCHP--DAITYEIFIVYSCRVGKFDVAFNFFNQMVKR----GLQP-RLATHAAFIKGYFIFYRY 417 (509)
Q Consensus 349 ~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~ 417 (509)
+|.+.+.+..+. +-.+ ....+..+...+...|++++|...+++..+. +... -..++..+...|...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 888887766543 2111 1345677777888888888888888876532 2110 123457788888889999
Q ss_pred HHHHHHHHHHHh
Q 047221 418 EDAYKYVVLSAD 429 (509)
Q Consensus 418 ~~A~~~~~~m~~ 429 (509)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888876543
No 130
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=2.9e-05 Score=72.04 Aligned_cols=192 Identities=8% Similarity=-0.112 Sum_probs=106.0
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047221 295 KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIV 374 (509)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 374 (509)
+...+..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|.+.+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666666777777777777777666542 2356666777777777777777777777776652 234566777777
Q ss_pred HHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 047221 375 YSCRVGKFDVAFNFFNQMVKRG----LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNN 450 (509)
Q Consensus 375 ~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 450 (509)
+|.+.|++++|...|++..+.. ...+...+..+ ...+. .. +..........+......+ ..+ ..|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~------~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~ 149 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKK------KR-WNSIEERRIHQESELHSYL-TRL-IAA 149 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHH------HH-HHHHHHTCCCCCCHHHHHH-HHH-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHH------HH-HHHHHHHHHhhhHHHHHHH-HHH-HHH
Confidence 7777777777777777665431 01111111111 11111 11 1112222333333333333 222 257
Q ss_pred ChHHHHHHHHHHHHCCCCcCHHHHHHHHH-HHHhc-CCHHHHHHHHHHHHhCC
Q 047221 451 NPVMAKNVLSEMMKNGLRPNVSVYRRVLK-HLHTS-HQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 451 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~-g~~~~a~~~~~~m~~~~ 501 (509)
+.++|++.+++..+ ..|+......-+. .+.+. +.+++|.++|++..+..
T Consensus 150 ~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 150 ERERELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHHHHHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 77777777777665 3455443333333 33333 56778888887776543
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.31 E-value=0.00047 Score=65.16 Aligned_cols=214 Identities=8% Similarity=-0.012 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHc----CCCHHHHHHHHHHHHhc-C-CccHHHHHHH
Q 047221 248 KGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLG-LYEMAKYVIKKT----ERKVSYYNILIKEMCRR-C-DFKGPRDLLV 320 (509)
Q Consensus 248 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m----~~~~~~~~~li~~~~~~-g-~~~~A~~~~~ 320 (509)
++|+++.+.+...+ +-+..+|+.--..+...| .++++..+++.+ +.+..+|+.-...+.+. + ++++++++++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~ 149 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIH 149 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 34444444444332 222333443333444444 355555555443 34445555444444443 4 4555555555
Q ss_pred HHHHcCCCCChHHHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------hHHH
Q 047221 321 EMRQVGCEPITLTYNYVLGVLCKNGQDA--------DACELLEEMLGRNCHPDAITYEIFIVYSCRVGK-------FDVA 385 (509)
Q Consensus 321 ~m~~~g~~p~~~t~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~~a 385 (509)
++.+.. .-|-.+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+-.-..+.+.++ ++++
T Consensus 150 k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eE 227 (349)
T 3q7a_A 150 GSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDE 227 (349)
T ss_dssp HHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence 555433 334444444333333333333 5555555555542 2245555555555544444 4566
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHhCC-----CCCCHHHHH
Q 047221 386 FNFFNQMVKRGLQPRLATHAAFIKGYFIFYRY--------------------EDAYKYVVLSADKY-----KSSSNMLYS 440 (509)
Q Consensus 386 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~-----~~p~~~~~~ 440 (509)
++.+++++... +-|...|+-+-..+.+.|+. .....+..++...+ -.+....+.
T Consensus 228 Le~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~ 306 (349)
T 3q7a_A 228 LIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE 306 (349)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence 66666665542 23555666555555554432 22223332222221 135666777
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 441 LLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 441 ~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
.|+..|...|+.++|.++++.+.+.
T Consensus 307 ~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 307 YLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 7777777777778888888777644
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.30 E-value=2e-05 Score=62.82 Aligned_cols=116 Identities=9% Similarity=0.035 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047221 298 YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSC 377 (509)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 377 (509)
.|..+...+...|++++|.+.|++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 34444445555555555555555544432 2234445555555555555555555555554431 223445555555555
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047221 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416 (509)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 416 (509)
+.|++++|...|++..+.. +.+...+..+..++.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555555442 2234445555555554443
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.30 E-value=1.5e-05 Score=63.86 Aligned_cols=97 Identities=10% Similarity=-0.029 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047221 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVY 375 (509)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 375 (509)
...|..+...+.+.|++++|++.|++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3444444555555555555555555544332 2234444444445555555555555555444431 1234444444445
Q ss_pred HHHcCChHHHHHHHHHHHH
Q 047221 376 SCRVGKFDVAFNFFNQMVK 394 (509)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~ 394 (509)
+.+.|++++|...|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555554443
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.29 E-value=1.9e-05 Score=62.87 Aligned_cols=117 Identities=9% Similarity=-0.048 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (509)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 444555555556666666666666555431 2244555555555666666666666666555442 22345555555566
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 047221 412 FIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNN 451 (509)
Q Consensus 412 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 451 (509)
...|++++|...|++..+... .+...+..+...+.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 666666666666655554421 234445555555555444
No 135
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.28 E-value=2.4e-05 Score=62.77 Aligned_cols=90 Identities=12% Similarity=0.034 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 344 (509)
+..+...|.+.|++++|...|++. +.+...|..+..+|.+.|++++|++.|++..+.. +.+...|..+..+|...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHC
Confidence 444555555555555555555543 3345555555555555555555555555554432 23344455555555555
Q ss_pred CChHHHHHHHHHHHh
Q 047221 345 GQDADACELLEEMLG 359 (509)
Q Consensus 345 g~~~~a~~~~~~m~~ 359 (509)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
No 136
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.28 E-value=4.2e-05 Score=63.52 Aligned_cols=103 Identities=11% Similarity=0.019 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047221 366 AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASL 445 (509)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 445 (509)
...+..+-..+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++..+.... +...|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence 3456666677778888888888888877653 335777777888888888888888888877765422 34566677888
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCcCHH
Q 047221 446 HDKNNNPVMAKNVLSEMMKNGLRPNVS 472 (509)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ 472 (509)
|.+.|++++|++.|++..+ +.|+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 8888888888888888776 345543
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.27 E-value=1.4e-05 Score=64.03 Aligned_cols=116 Identities=11% Similarity=-0.029 Sum_probs=85.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHH
Q 047221 263 SCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVL 338 (509)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 338 (509)
+.+...+..+...|.+.|++++|...|++. +.+...|..+...|...|++++|++.+++..+.. +.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 445566778888888888888888888875 3467788888888888888888888888887753 34567788888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047221 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG 380 (509)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 380 (509)
.+|.+.|++++|.+.|++..+.. +-+...+..+..++.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 88888888888888888877652 123445555555555444
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.25 E-value=4.3e-05 Score=70.89 Aligned_cols=189 Identities=9% Similarity=0.008 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 047221 265 LVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGV 340 (509)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 340 (509)
+...+..+...|.+.|++++|...|++. +.+...|..+..+|.+.|++++|++.+++..+.. +-+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4456677777888888888888888774 4467788888888888888888888888877653 3456677778888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 047221 341 LCKNGQDADACELLEEMLGRNCHPDA-ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED 419 (509)
Q Consensus 341 ~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 419 (509)
|...|++++|...|.+..+.. |+. ..+...+....+ ..++.. +..........+......+-. + ..|+.++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 888888888888887766531 110 001111111111 111111 122223333444444333322 2 2577888
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHhC-CChHHHHHHHHHHHH
Q 047221 420 AYKYVVLSADKYKSSSNM-LYSLLASLHDKN-NNPVMAKNVLSEMMK 464 (509)
Q Consensus 420 A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~-g~~~~a~~~~~~m~~ 464 (509)
|.+.++...+. .|+.. ....+...+.+. +.+++|.++|+++.+
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 88877766554 34432 333333334444 567788888877654
No 139
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.24 E-value=0.0019 Score=64.78 Aligned_cols=318 Identities=9% Similarity=-0.060 Sum_probs=188.9
Q ss_pred HHHHHHHHHhc-CCchHHHHHHHhhccCCCCccChhHHHHHHHHHhccCC-HHHHHHHHHHhhhC-CCc-cCHHHHHHHH
Q 047221 162 SVIEILRVLNS-EKVSALCFLKYMREIMPEFYKNSDICSLVIDNCGRLDD-YETMRQLLNDFNVY-QVC-LNEKAFGFLP 237 (509)
Q Consensus 162 ~~~~ll~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-~~~-p~~~~~~~ll 237 (509)
.|...+..+-. .-+.+.++|+......|+.. .|...+....+.++ .+....+|+..... |.. .+...|...+
T Consensus 17 vyer~l~~~P~~~~e~~~~iferal~~~ps~~----LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMSKDYRSLESLFGRCLKKSYNLD----LWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHSTTCCCHH----HHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHHhccCCCHH----HHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 44444444443 22479999999844446544 99998888877764 45677788876653 433 3667888777
Q ss_pred HHHHh----ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------------hcCCHHHHHHHHHHcC-----CC
Q 047221 238 VLISS----KALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFS-------------VLGLYEMAKYVIKKTE-----RK 295 (509)
Q Consensus 238 ~~~~~----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~-------------~~g~~~~A~~~~~~m~-----~~ 295 (509)
. +.. ..+..+.+..+|+.........-...|......-. ..+.+..|..+++.+. .+
T Consensus 93 ~-f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 93 E-EEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp H-HTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred H-HHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 7 322 12347889999999987432211222222221110 1122333444444331 23
Q ss_pred HHHHHHHHHHHHhcC-C------ccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047221 296 VSYYNILIKEMCRRC-D------FKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAIT 368 (509)
Q Consensus 296 ~~~~~~li~~~~~~g-~------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 368 (509)
...|...+.--...+ . .+.+..+|+++.... +-+...|-..+.-+.+.|+.+.|..++++.... +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 446666555433221 1 234677888888753 556788888888889999999999999999987 334333
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 047221 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRG---------LQP---RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN 436 (509)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~m~~~g---------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 436 (509)
|. .|+...+.++. ++.+.+.- ..+ ....|...+..+.+.|+++.|..+|++....+ .+.
T Consensus 249 ~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~ 319 (493)
T 2uy1_A 249 SL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGP 319 (493)
T ss_dssp HH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCH
T ss_pred HH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CCh
Confidence 32 23333222222 33332210 001 12456777777777889999999999982222 344
Q ss_pred HHHHHHHHHHHh-CCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047221 437 MLYSLLASLHDK-NNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRY 497 (509)
Q Consensus 437 ~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 497 (509)
..|-..+..-.. .++.+.|.++|+...+.- .-+...+...++-..+.|+.+.|..+|++.
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444422222222 336999999999998742 223445666777778899999999999886
No 140
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.23 E-value=0.00058 Score=64.53 Aligned_cols=216 Identities=9% Similarity=-0.000 Sum_probs=161.7
Q ss_pred cCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc-C-ChHHHH
Q 047221 279 LGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRC-DFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN-G-QDADAC 351 (509)
Q Consensus 279 ~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g-~~~~a~ 351 (509)
.+.-++|.++++++ +.+..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+.+. + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 34556788888876 567888998888888888 5999999999999875 55677788777777766 7 889999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------
Q 047221 352 ELLEEMLGRNCHPDAITYEIFIVYSCRVGKFD--------VAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR------- 416 (509)
Q Consensus 352 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------- 416 (509)
++++.+.+.. +-|...|+--.-.+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHH
Confidence 9999999873 447777777666666656666 8999999999874 3478889888888888776
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh--------------------HHHHHHHHHHHHCC-----CCcCH
Q 047221 417 YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNP--------------------VMAKNVLSEMMKNG-----LRPNV 471 (509)
Q Consensus 417 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g-----~~p~~ 471 (509)
++++++.+++..... .-|...|+.+-..+.+.|+. .+..+...++...+ -.+..
T Consensus 224 ~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 788999998887754 34778898877777777764 22333333333221 13577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 472 SVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 472 ~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
.....+++.|...|+.++|.++++.+.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 788889999999999999999999986
No 141
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.23 E-value=1.5e-05 Score=66.19 Aligned_cols=92 Identities=15% Similarity=0.007 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 047221 268 GVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK 343 (509)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 343 (509)
.+..+...|.+.|++++|...|++. +.+...|..+..+|.+.|++++|++.|++..+.. +-+...|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 3445555555555555555555553 3345555555555555555555555555555442 2234445555555555
Q ss_pred cCChHHHHHHHHHHHhC
Q 047221 344 NGQDADACELLEEMLGR 360 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~~~ 360 (509)
.|++++|...|+...+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 55555555555555443
No 142
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.22 E-value=4.4e-05 Score=61.18 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047221 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS 376 (509)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 376 (509)
..|......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...|..+..+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345555566666666666666666655543 3345555566666666666666666666555531 22345555555666
Q ss_pred HHcCChHHHHHHHHHHHHC
Q 047221 377 CRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 377 ~~~g~~~~a~~~~~~m~~~ 395 (509)
...|++++|.+.|++..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 6666666666666655543
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.20 E-value=2.2e-05 Score=66.91 Aligned_cols=114 Identities=9% Similarity=0.037 Sum_probs=73.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHH-HHhcCCc--cHHHH
Q 047221 245 LTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKE-MCRRCDF--KGPRD 317 (509)
Q Consensus 245 ~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~-~~~~g~~--~~A~~ 317 (509)
+++++|...++...+.. +.+...+..+..+|...|++++|...|++. +.+...|..+... |...|++ ++|..
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~ 102 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRA 102 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34666666666655543 345566677777777777777777777664 4566666666666 6667776 77777
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047221 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR 360 (509)
Q Consensus 318 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~ 360 (509)
.|++..+.. +-+...+..+...|...|++++|...|++..+.
T Consensus 103 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 103 MIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777776653 334556666667777777777777777776665
No 144
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.19 E-value=3.2e-05 Score=73.80 Aligned_cols=117 Identities=11% Similarity=-0.054 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHc----CCC---------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCC
Q 047221 267 SGVRALIEMFSVLGLYEMAKYVIKKT----ERK---------------VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC 327 (509)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 327 (509)
..+..+...|.+.|++++|...|++. +.+ ...|..+..+|.+.|++++|+..|++..+..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 34555566666666666666666553 122 3455555555555555555555555555442
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047221 328 EPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVA 385 (509)
Q Consensus 328 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 385 (509)
+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.++|
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2344455555555555555555555555554431 22344445555555555555554
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.18 E-value=2.1e-05 Score=67.09 Aligned_cols=120 Identities=7% Similarity=0.022 Sum_probs=68.4
Q ss_pred hcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCCh--HH
Q 047221 308 RRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVY-SCRVGKF--DV 384 (509)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~--~~ 384 (509)
..|++++|+..+++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3456666666666655543 3345566666666666666666666666665542 2244555555555 5566666 66
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 385 AFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 385 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
|...++++.+.. +-+...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666666666542 223555666666666666666666666666554
No 146
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.15 E-value=5.9e-05 Score=71.95 Aligned_cols=130 Identities=9% Similarity=-0.118 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC----------------hHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047221 295 KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI----------------TLTYNYVLGVLCKNGQDADACELLEEML 358 (509)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~li~~~~~~g~~~~a~~~~~~m~ 358 (509)
+...|..+...|.+.|++++|+..|++..+.. |+ ...|..+..+|.+.|++++|...+++..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677888899999999999999999988763 33 3677777777777777777777777776
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 047221 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDA-YKYVVLSA 428 (509)
Q Consensus 359 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 428 (509)
+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|+.++| ..+|+.|.
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 652 3356677777777777777777777777776652 23456677777777777777766 33454443
No 147
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.12 E-value=8.4e-06 Score=71.18 Aligned_cols=148 Identities=9% Similarity=-0.104 Sum_probs=69.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCC-CCC--------------hH
Q 047221 272 LIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC-EPI--------------TL 332 (509)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--------------~~ 332 (509)
.+.+....|+++.+.+.++.- ......+..+...+.+.|++++|++.|++..+..- .|+ ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 333444445555555555432 12344566666777777777777777777765321 110 14
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (509)
.|..+..+|.+.|++++|...++...+. .+.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++.
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHH
Confidence 4555555555555555555555555543 12234455555555555555555555555554431 123444444444444
Q ss_pred HcCCHHHHH
Q 047221 413 IFYRYEDAY 421 (509)
Q Consensus 413 ~~g~~~~A~ 421 (509)
..++.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 444444433
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.10 E-value=0.00014 Score=56.50 Aligned_cols=94 Identities=11% Similarity=-0.011 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR 378 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 378 (509)
|..+...+...|++++|.+.|++..... +.+...+..+...|...|++++|...+++..+.. +.+...+..+..++.+
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233344444444444444444444444444331 1133444444444444
Q ss_pred cCChHHHHHHHHHHHH
Q 047221 379 VGKFDVAFNFFNQMVK 394 (509)
Q Consensus 379 ~g~~~~a~~~~~~m~~ 394 (509)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555544443
No 149
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.07 E-value=1.6e-05 Score=65.87 Aligned_cols=23 Identities=9% Similarity=-0.097 Sum_probs=9.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 047221 404 HAAFIKGYFIFYRYEDAYKYVVL 426 (509)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~ 426 (509)
+..+..+|...|++++|...|++
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~ 114 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFL 114 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333333344444444444333
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.07 E-value=0.0001 Score=58.75 Aligned_cols=89 Identities=10% Similarity=-0.043 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 344 (509)
+..+...+.+.|++++|...|++. +.+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+..+|...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence 334444444444554444444442 2334444444444444444444444444444332 22233444444444444
Q ss_pred CChHHHHHHHHHHH
Q 047221 345 GQDADACELLEEML 358 (509)
Q Consensus 345 g~~~~a~~~~~~m~ 358 (509)
|++++|...|++..
T Consensus 86 ~~~~~A~~~~~~al 99 (126)
T 3upv_A 86 KEYASALETLDAAR 99 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHH
Confidence 44444444444443
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.06 E-value=0.00016 Score=56.14 Aligned_cols=95 Identities=12% Similarity=0.012 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (509)
.+..+...+...|++++|.+.|+...+.. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..+|.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444445555555555555555554431 2234444445555555555555555555554432 123444555555555
Q ss_pred HcCCHHHHHHHHHHHHh
Q 047221 413 IFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 413 ~~g~~~~A~~~~~~m~~ 429 (509)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 55555555555555444
No 152
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.00016 Score=57.52 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHD 447 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 447 (509)
.|..+-..+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++..+.. ..+...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 44455556666666666666666666542 2345666666666667777777777766666543 224555666666777
Q ss_pred hCCChHHHHHHHHHHHH
Q 047221 448 KNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 448 ~~g~~~~a~~~~~~m~~ 464 (509)
..|++++|++.|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 77777777777776655
No 153
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.06 E-value=0.0002 Score=70.56 Aligned_cols=192 Identities=9% Similarity=-0.029 Sum_probs=116.3
Q ss_pred HHHHHhcCCHHHHHHHHHHc---CCC------------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHc-CCCCC
Q 047221 273 IEMFSVLGLYEMAKYVIKKT---ERK------------------VSYYNILIKEMCRRCDFKGPRDLLVEMRQV-GCEPI 330 (509)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m---~~~------------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~ 330 (509)
...+.+.|++++|.+.|.++ .++ ..++..+...|.+.|++++|.+.+.++... +-.++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567778888888888775 111 124667777888888888888888766542 11122
Q ss_pred hH----HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CC--
Q 047221 331 TL----TYNYVLGVLCKNGQDADACELLEEMLGR----NCHPD-AITYEIFIVYSCRVGKFDVAFNFFNQMVKR--GL-- 397 (509)
Q Consensus 331 ~~----t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~-- 397 (509)
.. +.+.+-..+...|+.++|.+++...... +..+. ..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 1222223334457777777777765432 22333 345666777777778888888777776543 11
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC-CC-C--HHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 398 QP-RLATHAAFIKGYFIFYRYEDAYKYVVLSADK--YK-SS-S--NMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 398 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
.+ ...++..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1346777777777788888888777765532 11 11 1 23455566666677777777777776653
No 154
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.05 E-value=6.1e-05 Score=62.29 Aligned_cols=91 Identities=13% Similarity=-0.094 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 047221 268 GVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK 343 (509)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 343 (509)
.+..+...+.+.|++++|...|++. +.+...|..+..+|...|++++|++.|++..... +-+...+..+..+|..
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3444445555555555555555443 3344455555555555555555555555544432 2233444444555555
Q ss_pred cCChHHHHHHHHHHHh
Q 047221 344 NGQDADACELLEEMLG 359 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~~ 359 (509)
.|++++|.+.|+...+
T Consensus 102 ~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 102 XGELAEAESGLFLAQE 117 (148)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555554443
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.04 E-value=0.00011 Score=58.82 Aligned_cols=104 Identities=8% Similarity=0.067 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCC----HHHHHH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY--KSSS----NMLYSL 441 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~~~~~ 441 (509)
.+..+-..+.+.|++++|+..|++.++.. +-+...|+.+..+|.+.|++++|++.+++..+.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34455566666666666666666666542 2245566666666677777777766666655421 1111 135666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHH
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVY 474 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 474 (509)
+...+...|++++|++.|++.+. ..||..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 66777777777777777777665 34555443
No 156
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.03 E-value=0.0013 Score=61.69 Aligned_cols=133 Identities=8% Similarity=0.045 Sum_probs=69.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHc----CCCHHHHHHHHHHHHh
Q 047221 243 KALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGL----------YEMAKYVIKKT----ERKVSYYNILIKEMCR 308 (509)
Q Consensus 243 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m----~~~~~~~~~li~~~~~ 308 (509)
.+...++|+.+.+.+...+ +-+..+|+.--..+...|. ++++..+++.+ +.+..+|+.-...+.+
T Consensus 42 ~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 4444456777777777644 2233344432222222221 44555555554 4556666665555555
Q ss_pred cCC--ccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 047221 309 RCD--FKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ-DADACELLEEMLGRNCHPDAITYEIFIVYSCR 378 (509)
Q Consensus 309 ~g~--~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 378 (509)
.++ +++++++++.+.+.. +-|-..|+.-.-.+...|. ++++++.++.+.+.. +-|...|+-....+.+
T Consensus 121 l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 121 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 553 566666666666554 4455566555555555565 356666666666542 2345555554444443
No 157
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.01 E-value=5.5e-05 Score=58.30 Aligned_cols=93 Identities=9% Similarity=-0.109 Sum_probs=39.5
Q ss_pred HHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHH
Q 047221 300 NILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHP--DAITYEIFIVYSC 377 (509)
Q Consensus 300 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~ 377 (509)
..+...+.+.|++++|...|++..+.. +.+...|..+...+...|++++|.+.+++..+.. +. +...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 333344444444444444444443332 2233344444444444444444444444444431 11 2344444444444
Q ss_pred Hc-CChHHHHHHHHHHHH
Q 047221 378 RV-GKFDVAFNFFNQMVK 394 (509)
Q Consensus 378 ~~-g~~~~a~~~~~~m~~ 394 (509)
+. |++++|.+.+++..+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 44 444444444444443
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.01 E-value=0.00012 Score=61.51 Aligned_cols=94 Identities=7% Similarity=-0.077 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 047221 266 VSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVL 341 (509)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 341 (509)
...+..+...|.+.|++++|...|++. +.+...|..+..+|.+.|++++|+..|++..+.. +-+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345566666666777777777766664 3456666666677777777777777776666553 33456666666666
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 047221 342 CKNGQDADACELLEEMLGR 360 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~ 360 (509)
...|++++|.+.|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6777777777766666554
No 159
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.01 E-value=6.2e-05 Score=59.88 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNC--HPD----AITYEIF 372 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~~l 372 (509)
|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+++..+... .++ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3333444444444444444444443332 22333444444444444444444444444433210 111 3344444
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 047221 373 IVYSCRVGKFDVAFNFFNQMVK 394 (509)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~m~~ 394 (509)
..++.+.|++++|...|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444455555555555554444
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.01 E-value=8.8e-05 Score=59.44 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcC--CCCC----hHHHHHH
Q 047221 268 GVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVG--CEPI----TLTYNYV 337 (509)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~t~~~l 337 (509)
.+..|...|.+.|++++|+..|++. +.+...|+.+..+|.+.|++++|++.|++..+.. ..++ ..+|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3455666666666666666666553 3445566666666666666666666666554321 0111 1234444
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 047221 338 LGVLCKNGQDADACELLEEMLG 359 (509)
Q Consensus 338 i~~~~~~g~~~~a~~~~~~m~~ 359 (509)
..++...|++++|.+.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555555555555443
No 161
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.00 E-value=8.9e-05 Score=60.65 Aligned_cols=87 Identities=9% Similarity=-0.172 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ 346 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 346 (509)
.+...+.+.|++++|...|++. +.+...|..+..+|.+.|++++|+..|++..... +-+...+..+..+|...|+
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444444444444444444442 2334444444444444444444444444444432 2233334444444444444
Q ss_pred hHHHHHHHHHHH
Q 047221 347 DADACELLEEML 358 (509)
Q Consensus 347 ~~~a~~~~~~m~ 358 (509)
+++|.+.|+...
T Consensus 102 ~~~A~~~~~~al 113 (142)
T 2xcb_A 102 LDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.00 E-value=0.00013 Score=58.80 Aligned_cols=96 Identities=7% Similarity=-0.065 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047221 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVY 375 (509)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 375 (509)
...|..+...+...|++++|+..|++..... +.+...|..+..+|...|++++|...++...+.. +.+...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3444444444444555555555554444332 2234444445555555555555555555444431 1234444555555
Q ss_pred HHHcCChHHHHHHHHHHH
Q 047221 376 SCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~ 393 (509)
|...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555555444
No 163
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.00 E-value=7.2e-05 Score=59.47 Aligned_cols=107 Identities=9% Similarity=0.080 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC----HHHHHH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYK--SSS----NMLYSL 441 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~~~~~ 441 (509)
.+..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+++..+... .++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44555556666666666666666665542 23455666666666666666666666666554321 112 455666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHH
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRV 477 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 477 (509)
+...|...|++++|.+.|++..+. .|+......+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 677777777777777777777663 3454444433
No 164
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.00 E-value=6e-05 Score=58.11 Aligned_cols=96 Identities=9% Similarity=0.036 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP--RLATHAAFIKG 410 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~ 410 (509)
.+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +. +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34445555555556666655555555432 2234455555555555566666666555555442 12 34555555555
Q ss_pred HHHc-CCHHHHHHHHHHHHhC
Q 047221 411 YFIF-YRYEDAYKYVVLSADK 430 (509)
Q Consensus 411 ~~~~-g~~~~A~~~~~~m~~~ 430 (509)
|.+. |++++|.+.+++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5666666555555544
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.97 E-value=8.8e-05 Score=64.56 Aligned_cols=125 Identities=11% Similarity=-0.047 Sum_probs=75.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc----CCC----------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCC
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT----ERK----------------VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCE 328 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m----~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 328 (509)
+..+...|.+.|++++|...|++. +.+ ...|..+..+|.+.|++++|+..+++..+.. +
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-c
Confidence 444555555666666666666553 112 2567777777778888888888887777653 4
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHHC
Q 047221 329 PITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF-NFFNQMVKR 395 (509)
Q Consensus 329 p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~ 395 (509)
.+...+..+..+|...|++++|.+.|++..+.. +-+...+..+..++...++.+++. ..+..|...
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456677777778888888888888888776652 234566666666666666666655 444544433
No 166
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00038 Score=68.50 Aligned_cols=187 Identities=9% Similarity=-0.042 Sum_probs=137.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHcC------CCH----
Q 047221 243 KALTKKGIWRVVEVLNQVGGSCL----------------VSGVRALIEMFSVLGLYEMAKYVIKKTE------RKV---- 296 (509)
Q Consensus 243 ~~~~~~~a~~~~~~m~~~g~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~---- 296 (509)
..|++++|.+.+..+.+...... ...+..|...|.+.|++++|.+.+.+.- .+.
T Consensus 16 ~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 95 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVK 95 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHH
Confidence 45569999999999987432211 1246789999999999999999998861 111
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHH----cCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-H
Q 047221 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQ----VGCEPI-TLTYNYVLGVLCKNGQDADACELLEEMLGR----NCHPD-A 366 (509)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~ 366 (509)
.+.+.+-..+...|+.++|.+++.+... .+..+. ..++..+...|...|++++|..++.+.... +-.+. .
T Consensus 96 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 175 (434)
T 4b4t_Q 96 VLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLV 175 (434)
T ss_dssp HHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHH
Confidence 2334444455567889999999987763 233333 457788999999999999999999987653 22222 4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047221 367 ITYEIFIVYSCRVGKFDVAFNFFNQMVKR----GLQPR--LATHAAFIKGYFIFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (509)
.+|..++..|...|++++|..++++.... +..+. ...+..+...+...|++++|...|.+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 176 DVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 57888999999999999999999987643 21111 34567777788889999999999877654
No 167
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.95 E-value=7e-05 Score=62.01 Aligned_cols=131 Identities=9% Similarity=-0.057 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 047221 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGL-QPR----LATHAAFIKGYFIFYRYEDAYKYVVLSADK----YKSS-SNML 438 (509)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~ 438 (509)
+..+...|...|++++|...+++..+..- ..+ ..++..+...|...|++++|...+++..+. +..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33444444445555555555544432200 001 124455555555566666666655554432 1000 1234
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 439 YSLLASLHDKNNNPVMAKNVLSEMMKN----GLRP-NVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 439 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 555666666666666666666665432 1111 123556666677777777777777776554
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.95 E-value=0.00022 Score=57.51 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047221 330 ITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIK 409 (509)
Q Consensus 330 ~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 409 (509)
+...|..+...+...|++++|...|....+.. +.+...|..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 45566666666666777777777666665542 2245566666666666677777777666666543 224556666666
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 047221 410 GYFIFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~ 429 (509)
+|...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 66667777777666666554
No 169
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.93 E-value=0.00025 Score=59.47 Aligned_cols=98 Identities=9% Similarity=0.041 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047221 296 VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVY 375 (509)
Q Consensus 296 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 375 (509)
...|..+...+.+.|++++|++.|++..+.. +-+...|..+..+|.+.|++++|...|++..+.. +-+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4567777778888888888888888877654 3466777788888888888888888888877753 3356777777788
Q ss_pred HHHcCChHHHHHHHHHHHHC
Q 047221 376 SCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~~ 395 (509)
|.+.|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 88888888888888877654
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.91 E-value=6.6e-05 Score=62.17 Aligned_cols=60 Identities=12% Similarity=0.056 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGR----NCHP-DAITYEIFIVYSCRVGKFDVAFNFFNQM 392 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 392 (509)
++..+...|...|++++|.+.+++..+. +..+ ....+..+...+...|++++|...+++.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3444444455555555555555443321 0000 0223344444444555555555555443
No 171
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.91 E-value=0.00015 Score=59.24 Aligned_cols=90 Identities=10% Similarity=-0.043 Sum_probs=40.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047221 337 VLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416 (509)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 416 (509)
+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|...|++..+.. +.+...+..+..+|...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3344444444444444444444331 1233444444444444455555555554444432 1233344444444555555
Q ss_pred HHHHHHHHHHHH
Q 047221 417 YEDAYKYVVLSA 428 (509)
Q Consensus 417 ~~~A~~~~~~m~ 428 (509)
+++|...|+...
T Consensus 102 ~~~A~~~~~~al 113 (142)
T 2xcb_A 102 LDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=0.00035 Score=56.87 Aligned_cols=94 Identities=11% Similarity=0.012 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047221 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI----TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIF 372 (509)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 372 (509)
..|..+...+.+.|++++|++.|++..+. .|+ ...|..+..+|...|++++|...+++..+.. +.+...+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 33444444444444444444444444432 222 2333344444444444444444444433321 1123333334
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 047221 373 IVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~m~ 393 (509)
..+|...|++++|...|++..
T Consensus 106 a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444443
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.87 E-value=0.00055 Score=55.67 Aligned_cols=96 Identities=10% Similarity=-0.040 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047221 366 AITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR----LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSL 441 (509)
Q Consensus 366 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 441 (509)
...+..+...+.+.|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++..+.. ..+...|..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 344444444455555555555555554433 233 3444455555555555555555555544432 113444455
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
+...|...|++++|.+.|++..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555555544
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.83 E-value=0.00015 Score=57.45 Aligned_cols=88 Identities=9% Similarity=-0.147 Sum_probs=44.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ 346 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 346 (509)
.+...+.+.|++++|...|++. +.+...|..+..++...|++++|+..|++..+.. +-+...+..+..+|.+.|+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3444455555555555555543 3345555555555555555555555555555432 2234444555555555555
Q ss_pred hHHHHHHHHHHHh
Q 047221 347 DADACELLEEMLG 359 (509)
Q Consensus 347 ~~~a~~~~~~m~~ 359 (509)
+++|...+++..+
T Consensus 101 ~~~A~~~~~~al~ 113 (121)
T 1hxi_A 101 ANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.77 E-value=0.00028 Score=55.87 Aligned_cols=88 Identities=11% Similarity=-0.034 Sum_probs=38.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChH
Q 047221 374 VYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPV 453 (509)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 453 (509)
..+.+.|++++|...|++..+.. +-+...|..+..++...|++++|...|++..+... -+...+..+...|...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence 34444455555555554444431 12344444444444444444444444444443321 12333444444444444444
Q ss_pred HHHHHHHHHH
Q 047221 454 MAKNVLSEMM 463 (509)
Q Consensus 454 ~a~~~~~~m~ 463 (509)
+|++.+++..
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.75 E-value=0.00045 Score=54.86 Aligned_cols=99 Identities=12% Similarity=0.070 Sum_probs=75.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHH
Q 047221 371 IFIVYSCRVGKFDVAFNFFNQMVKRGLQPRL---ATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSS--NMLYSLLASL 445 (509)
Q Consensus 371 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~ 445 (509)
.+...+.+.|++++|...|+++.+..- .+. ..+..+..+|.+.|++++|...|++..+...... ...+..+...
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 455677788999999999999887532 122 4777788889999999999999998887642211 5667778888
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCcCHH
Q 047221 446 HDKNNNPVMAKNVLSEMMKNGLRPNVS 472 (509)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ 472 (509)
+...|++++|.+.|+++.+. .|+..
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~--~p~~~ 110 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ--YPGSD 110 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTSH
T ss_pred HHHcCCHHHHHHHHHHHHHH--CCCCh
Confidence 99999999999999998874 35543
No 177
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.73 E-value=0.00015 Score=72.48 Aligned_cols=124 Identities=8% Similarity=0.050 Sum_probs=69.7
Q ss_pred HHHcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CC-CHHHHHH
Q 047221 376 SCRVGKFDVAFNFFNQMVKR---GLQP----RLATHAAFIKGYFIFYRYEDAYKYVVLSADK-----YK-SS-SNMLYSL 441 (509)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p-~~~~~~~ 441 (509)
+...|++++|+.++++..+. -+.+ ...+++.|..+|...|++++|+.++++..+. |. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666655432 1111 2345666666777777777776666654431 11 12 2345666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHH-----CCC-CcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 442 LASLHDKNNNPVMAKNVLSEMMK-----NGL-RPNV-SVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 442 li~~~~~~g~~~~a~~~~~~m~~-----~g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
|...|...|++++|+.++++..+ .|- .|+. .+...+-.++...|++++|+.++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777666543 121 1222 2344444555666777777777777764
No 178
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.72 E-value=0.0003 Score=70.25 Aligned_cols=121 Identities=8% Similarity=0.004 Sum_probs=81.0
Q ss_pred HHHHhcCCHHHHHHHHHHc--------CCC----HHHHHHHHHHHHhcCCccHHHHHHHHHHHc---CCC---CC-hHHH
Q 047221 274 EMFSVLGLYEMAKYVIKKT--------ERK----VSYYNILIKEMCRRCDFKGPRDLLVEMRQV---GCE---PI-TLTY 334 (509)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m--------~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~---p~-~~t~ 334 (509)
..+...|++++|+.++++. .++ ..+++.|...|...|++++|+.++++..+. -+. |+ ..++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456778999998888764 222 567888999999999999999988876532 112 22 4567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047221 335 NYVLGVLCKNGQDADACELLEEMLGR-----NC-HPD-AITYEIFIVYSCRVGKFDVAFNFFNQMVK 394 (509)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 394 (509)
+.|...|...|++++|+.++++..+- |- .|+ ..+.+.+-.++...+.+++|+.+|+.+.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888777765432 21 122 23444555666666777777777777654
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.71 E-value=0.00045 Score=68.85 Aligned_cols=117 Identities=9% Similarity=-0.057 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHc----CCC---------------HHHHHHHHHHHHhcCCccHHHHHHHHHHHcCC
Q 047221 267 SGVRALIEMFSVLGLYEMAKYVIKKT----ERK---------------VSYYNILIKEMCRRCDFKGPRDLLVEMRQVGC 327 (509)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m----~~~---------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 327 (509)
..+..+...|.+.|++++|...|++. +.+ ...|..+..+|.+.|++++|+..|++..+..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 34556666666667777776666653 222 3445555555555555555555555554432
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 047221 328 EPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVA 385 (509)
Q Consensus 328 ~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 385 (509)
+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 2234444555555555555555555555544431 11223344444444444444443
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.71 E-value=0.023 Score=53.22 Aligned_cols=95 Identities=9% Similarity=-0.058 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCC-ccHHHHHH
Q 047221 247 KKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLG--LYEMAKYVIKKT----ERKVSYYNILIKEMCRRCD-FKGPRDLL 319 (509)
Q Consensus 247 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~-~~~A~~~~ 319 (509)
++++..+++.+.... +-+..+|+.-...+.+.| .++++..+++++ +.|-.+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 355666666665543 334555655555555555 366666666665 4566666666666666666 36666666
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHh
Q 047221 320 VEMRQVGCEPITLTYNYVLGVLCK 343 (509)
Q Consensus 320 ~~m~~~g~~p~~~t~~~li~~~~~ 343 (509)
+++.+.. .-|...|+.....+.+
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHH
Confidence 6666554 3455556555444433
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.70 E-value=0.00087 Score=53.17 Aligned_cols=95 Identities=17% Similarity=0.038 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 047221 335 NYVLGVLCKNGQDADACELLEEMLGRNCHPDA---ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR---LATHAAFI 408 (509)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li 408 (509)
..+...+...|++++|...|+...+... .+. ..+..+..++.+.|++++|...|++..+.. +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 3455677888999999999988877532 122 466677788888899999999998887753 122 56677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCC
Q 047221 409 KGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 409 ~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
.+|.+.|++++|...|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 88888999999999998887753
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.68 E-value=0.00032 Score=70.25 Aligned_cols=84 Identities=12% Similarity=-0.030 Sum_probs=40.0
Q ss_pred HHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHH
Q 047221 275 MFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADA 350 (509)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a 350 (509)
.|.+.|++++|.+.|++. +.+..+|..+..+|.+.|++++|++.+++..+.. +-+..+|..+..+|.+.|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 344445555555555443 2334455555555555555555555555544432 22334444444445555555555
Q ss_pred HHHHHHHHh
Q 047221 351 CELLEEMLG 359 (509)
Q Consensus 351 ~~~~~~m~~ 359 (509)
.+.|++..+
T Consensus 94 ~~~~~~al~ 102 (477)
T 1wao_1 94 LRDYETVVK 102 (477)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
No 183
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.64 E-value=0.0017 Score=52.70 Aligned_cols=110 Identities=10% Similarity=-0.055 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 047221 346 QDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFI----FYRYEDAY 421 (509)
Q Consensus 346 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 421 (509)
++++|.+.|++..+.| .++.. |-..|...+.+++|.+.|++..+.| +...+..|-..|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3445555555555444 11221 3333434444555555555555544 44455555555554 45555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----CCChHHHHHHHHHHHHCC
Q 047221 422 KYVVLSADKYKSSSNMLYSLLASLHDK----NNNPVMAKNVLSEMMKNG 466 (509)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 466 (509)
++|++..+.| +...+..|...|.. .++.++|+++|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555555543 34444445555555 455555555555555544
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.62 E-value=0.00068 Score=67.52 Aligned_cols=123 Identities=7% Similarity=-0.078 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC----------------hHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047221 295 KVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI----------------TLTYNYVLGVLCKNGQDADACELLEEML 358 (509)
Q Consensus 295 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~li~~~~~~g~~~~a~~~~~~m~ 358 (509)
....|..+...|.+.|++++|+..|++..+.. |+ ...|..+..+|.+.|++++|+..+++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35577888888999999999999998887642 22 3555666666666666666666666665
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047221 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 359 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 421 (509)
+.. +.+...|..+-.+|.+.|++++|...|++..+.. +-+...+..+..++.+.|+.++|.
T Consensus 345 ~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 345 GLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred hcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 542 2245556666666666666666666666665442 113345555555555555555544
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.60 E-value=0.00071 Score=54.96 Aligned_cols=112 Identities=9% Similarity=-0.023 Sum_probs=93.1
Q ss_pred cCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHH
Q 047221 309 RCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCR----VGKFDV 384 (509)
Q Consensus 309 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~ 384 (509)
.+++++|++.|++..+.| .++.. |-..|...+.+++|.+.|++..+.| +...+..|-..|.. .++.++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 346788999999988887 44443 6666777788888999999988875 67788888888887 789999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 047221 385 AFNFFNQMVKRGLQPRLATHAAFIKGYFI----FYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 385 a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~ 431 (509)
|.++|++..+.| +...+..|-..|.. .++.++|.++|++..+.|
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 999999998887 78888889999988 889999999999988876
No 186
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.58 E-value=0.00015 Score=72.65 Aligned_cols=113 Identities=9% Similarity=-0.119 Sum_probs=85.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHH
Q 047221 242 SKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRD 317 (509)
Q Consensus 242 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~ 317 (509)
...+++++|...+++..+.. +.+..++..+..+|.+.|++++|...+++. +.+..+|..+..+|.+.|++++|++
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 35566999999999988864 445788999999999999999999999885 4568899999999999999999999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHH--HHhcCChHHHHHHHHH
Q 047221 318 LLVEMRQVGCEPITLTYNYVLGV--LCKNGQDADACELLEE 356 (509)
Q Consensus 318 ~~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~a~~~~~~ 356 (509)
.|++..+.. +-+...+..+..+ +.+.|++++|.+.+++
T Consensus 96 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 96 DYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999988763 2234455555444 7777888888887765
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.56 E-value=0.00098 Score=64.29 Aligned_cols=89 Identities=11% Similarity=-0.080 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047221 331 TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410 (509)
Q Consensus 331 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (509)
...|..+..+|.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|++++|...|++..+.. +-+...+..+..+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3455556666666666666666666665542 2244555555666666666666666666655442 1234455555555
Q ss_pred HHHcCCHHHHH
Q 047221 411 YFIFYRYEDAY 421 (509)
Q Consensus 411 ~~~~g~~~~A~ 421 (509)
+.+.++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555444443
No 188
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.56 E-value=0.00019 Score=56.34 Aligned_cols=86 Identities=7% Similarity=0.042 Sum_probs=49.4
Q ss_pred cCCccHHHHHHHHHHHcCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 047221 309 RCDFKGPRDLLVEMRQVGC--EPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAF 386 (509)
Q Consensus 309 ~g~~~~A~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 386 (509)
.|++++|+..|++..+.+. +-+...+..+..+|...|++++|...|++..+.. +-+...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 4666667777766665431 2234455666666666677777766666666542 224555666666666666666666
Q ss_pred HHHHHHHHC
Q 047221 387 NFFNQMVKR 395 (509)
Q Consensus 387 ~~~~~m~~~ 395 (509)
..+++..+.
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665544
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.55 E-value=0.0012 Score=54.96 Aligned_cols=69 Identities=10% Similarity=-0.004 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHH
Q 047221 401 LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVS 472 (509)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 472 (509)
...|..+..+|.+.|++++|...+++..+.. ..+...|..+..+|...|++++|++.|++..+ +.|+..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 4567777777888888888888887776653 23566777778888888888888888887776 345433
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.49 E-value=0.0013 Score=63.31 Aligned_cols=90 Identities=10% Similarity=-0.037 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc-CHHHHHHHH
Q 047221 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP-NVSVYRRVL 478 (509)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll 478 (509)
+...|..+..+|.+.|++++|.+.+++..+.. ..+...|..+..+|...|++++|++.|++..+. .| +...+..+.
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~ 348 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL 348 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 34567777788888888888888888777653 235667777888888888888888888887763 34 455566666
Q ss_pred HHHHhcCCHHHHHH
Q 047221 479 KHLHTSHQEHMAKC 492 (509)
Q Consensus 479 ~~~~~~g~~~~a~~ 492 (509)
.++...++.+++.+
T Consensus 349 ~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 349 KVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666554
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.46 E-value=0.00027 Score=55.43 Aligned_cols=85 Identities=16% Similarity=0.107 Sum_probs=41.4
Q ss_pred cCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047221 344 NGQDADACELLEEMLGRN--CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 421 (509)
.|++++|...|++..+.+ -+-+...+..+..+|.+.|++++|...|++..+.. +-+...+..+..+|.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355555555555555542 11123345555555555555555555555555442 223445555555555555555555
Q ss_pred HHHHHHHh
Q 047221 422 KYVVLSAD 429 (509)
Q Consensus 422 ~~~~~m~~ 429 (509)
..|++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.39 E-value=0.00044 Score=65.84 Aligned_cols=151 Identities=11% Similarity=-0.019 Sum_probs=79.0
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047221 331 TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKG 410 (509)
Q Consensus 331 ~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 410 (509)
...+..+...+.+.|++++|...|.+..+. .|+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 566778888888999999999999987764 344331 122233333332221 1266777788
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHH-HHHHHHHH-HHhcCCHH
Q 047221 411 YFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVS-VYRRVLKH-LHTSHQEH 488 (509)
Q Consensus 411 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~-~~~~g~~~ 488 (509)
|.+.|++++|...+++..+.. ..+...|..+..+|...|++++|++.|++..+ +.|+.. .+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888777653 23566777788888888888888888888765 344433 33333333 23345667
Q ss_pred HHHHHHHHHHhCCCC
Q 047221 489 MAKCLSSRYSSLSLG 503 (509)
Q Consensus 489 ~a~~~~~~m~~~~~~ 503 (509)
++..++++|.+..+.
T Consensus 317 ~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 317 KQKEMYKGIFKGKDE 331 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHHhhCCCCC
Confidence 777788877765544
No 193
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.37 E-value=0.0021 Score=53.47 Aligned_cols=63 Identities=16% Similarity=0.052 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 047221 332 LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR 395 (509)
Q Consensus 332 ~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 395 (509)
..|..+..+|.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 344555555555555555555555554431 223445555555555555555555555555443
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.34 E-value=0.0007 Score=64.46 Aligned_cols=61 Identities=7% Similarity=-0.166 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047221 298 YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLG 359 (509)
Q Consensus 298 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 359 (509)
.|+.+..+|.+.|++++|+..+++..+.. +-+...|..+..+|...|++++|...|++..+
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555555555555555544432 22344455555555555555555555554443
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.33 E-value=0.0033 Score=51.86 Aligned_cols=56 Identities=11% Similarity=-0.019 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc---CCC--------H-----HHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT---ERK--------V-----SYYNILIKEMCRRCDFKGPRDLLVEMRQ 324 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m---~~~--------~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (509)
+......+.+.|++++|...|++. .|+ . ..|+.+..++.+.|++++|+..+++..+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445556666667777777766653 122 2 2555555555556666655555555443
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.30 E-value=0.0048 Score=50.89 Aligned_cols=62 Identities=10% Similarity=-0.108 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHC-----CCCcCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 438 LYSLLASLHDKNNNPVMAKNVLSEMMKN-----GLRPNV-SVY----RRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 438 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~-~t~----~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
.|..+..++.+.|++++|+..+++.++. .+.|+. ..| ...-.++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666777777777666666652 125544 345 5666677777777777777777653
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00034 Score=53.86 Aligned_cols=63 Identities=13% Similarity=-0.029 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 401 LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
...+..+...+...|++++|.+.|++..+.. ..+...|..+..+|.+.|++++|++.+++..+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444555555555666666666665555432 12344555556666666666666666666554
No 198
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.0083 Score=64.19 Aligned_cols=45 Identities=13% Similarity=0.054 Sum_probs=21.5
Q ss_pred HhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047221 307 CRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEM 357 (509)
Q Consensus 307 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 357 (509)
.+.|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555443222 23344555555555555555555555544
No 199
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.01 E-value=0.043 Score=55.94 Aligned_cols=172 Identities=6% Similarity=-0.022 Sum_probs=129.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHc----CCCHHHHHHHHHHHHh
Q 047221 243 KALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGL----------YEMAKYVIKKT----ERKVSYYNILIKEMCR 308 (509)
Q Consensus 243 ~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m----~~~~~~~~~li~~~~~ 308 (509)
.+...++|.+.++.+.+.. +-+..+|+.--.++.+.|+ ++++.+.++++ +.+..+|+.-...+.+
T Consensus 41 ~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 41 AGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4455677788888888765 3345566665566666666 88888888886 6678889888888888
Q ss_pred cC--CccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc------
Q 047221 309 RC--DFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG-QDADACELLEEMLGRNCHPDAITYEIFIVYSCRV------ 379 (509)
Q Consensus 309 ~g--~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~------ 379 (509)
.+ +++++++.++++.+.. .-|-.+|+.-..++.+.| .++++++.++++.+.. +-|...|+-....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 88 6699999999999876 567888888888888888 8899999999888763 34677788777766663
Q ss_pred --------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 047221 380 --------GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418 (509)
Q Consensus 380 --------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 418 (509)
+.++++.+.+++..... +-|...|+-+-..+.+.++.+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCcc
Confidence 45788999998888763 336778888777777766633
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.01 E-value=0.03 Score=57.11 Aligned_cols=167 Identities=10% Similarity=-0.026 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCC----------ccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-
Q 047221 281 LYEMAKYVIKKT----ERKVSYYNILIKEMCRRCD----------FKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG- 345 (509)
Q Consensus 281 ~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g- 345 (509)
.-++|.+.++++ +.+..+|+.--..+.+.|+ ++++++.++++.+.. +-+..+|+.-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 345667766665 4456667666555555555 677777777776654 345566666666666666
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---------
Q 047221 346 -QDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG-KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF--------- 414 (509)
Q Consensus 346 -~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------- 414 (509)
+++++++.++.+.+.. +-|...|+---..+.+.| .++++.+.++++++.. .-|...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 5577777777776653 235666666655666666 6667777766666553 22556666555555442
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 047221 415 -----YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNN 451 (509)
Q Consensus 415 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 451 (509)
+.++++.+.+++..... .-|...|+.+-..+.+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33556666665555432 1244555555555555554
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.01 E-value=0.0068 Score=46.91 Aligned_cols=76 Identities=13% Similarity=-0.040 Sum_probs=32.3
Q ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 047221 315 PRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQM 392 (509)
Q Consensus 315 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 392 (509)
|++.|++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|.+.|++++|...|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444443322 2233444444444444444444444444444331 112334444444444444444444444443
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0024 Score=48.91 Aligned_cols=57 Identities=9% Similarity=0.029 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 047221 268 GVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQ 324 (509)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (509)
.+..+...+.+.|++++|...|++. +.+...|..+..+|.+.|++++|++.|++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444455555555555554442 23344444444455555555555555544443
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.01 E-value=0.0067 Score=44.27 Aligned_cols=56 Identities=13% Similarity=0.098 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQ 324 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (509)
+..+...|...|++++|...|++. +.+...|..+...|.+.|++++|.+.|++..+
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444444444444444432 22334444444444444444444444444443
No 204
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.89 E-value=0.071 Score=41.85 Aligned_cols=139 Identities=9% Similarity=0.006 Sum_probs=93.3
Q ss_pred ccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047221 207 RLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAK 286 (509)
Q Consensus 207 ~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 286 (509)
-.|.+++..++..+..... +..-||.+|.-.....+ +..+++.+...|---|.. .||++....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~----C~y~v~vLd~IGkiFDis----------~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESID----CRYMFQVLDKIGSYFDLD----------KCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCC----HHHHHHHHHHHGGGSCGG----------GCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---Cccccceeeeecchhhc----hhHHHHHHHHHhhhcCcH----------hhhcHHHHH
Confidence 3577777777777765542 45556655553333332 334444444444344432 577777777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047221 287 YVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCH 363 (509)
Q Consensus 287 ~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 363 (509)
..+-.+..+....+..++.....|+-++-.+++.++... .+|+....-.+..+|.+.|+..+|.+++.+..+.|++
T Consensus 82 ~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 777777777777778888888888888888888886443 3677777778888888888888888888888887753
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.88 E-value=0.013 Score=42.57 Aligned_cols=78 Identities=12% Similarity=0.157 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYF 412 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 412 (509)
.+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|...+++..+.. +-+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444444445555555555554444331 1234444444555555555555555555544432 123344444444443
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.88 E-value=0.0052 Score=50.60 Aligned_cols=116 Identities=11% Similarity=0.020 Sum_probs=68.2
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047221 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR----------YEDAYKYVVLSADKYKSSSNMLYSLLASLHD 447 (509)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 447 (509)
+.+.+++|...++...+.. +-+...|+.+-.++...|+ +++|+..|++..+.... +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 3344555555555555442 2244555545555554443 34666666666654322 4455666777776
Q ss_pred hC-----------CChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 448 KN-----------NNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 448 ~~-----------g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
.. |++++|++.|++.++ +.|+...|...+... ++|-++.-.+...+..
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~------~ka~el~~~~~~~~~~ 150 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQGLG 150 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHSSSC
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH------HhCHhccCcccccccC
Confidence 55 478999999998887 678877776666544 4555655555555443
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.80 E-value=0.011 Score=45.66 Aligned_cols=62 Identities=8% Similarity=-0.139 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 047221 365 DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLS 427 (509)
Q Consensus 365 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 427 (509)
+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444455555555555555555544432 123344444444455555555555544443
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.72 E-value=0.0086 Score=45.13 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047221 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEE 356 (509)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~ 356 (509)
..|..+...|.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|.+.|++
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 66 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333444444444444444444444443332 12233344444444444444444444443
No 209
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.65 E-value=0.024 Score=60.60 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=112.5
Q ss_pred HHHHhcCCHHHHHH-HHHHcC-CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHH
Q 047221 274 EMFSVLGLYEMAKY-VIKKTE-RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADAC 351 (509)
Q Consensus 274 ~~~~~~g~~~~A~~-~~~~m~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~ 351 (509)
......+++++|.+ ++..++ .+. ...++..+.+.|..++|+++.+.-. .-...+...|++++|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~~~~--~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEGKDS--LTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCCHHH--HHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCCchHH--HHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHH
Confidence 44456789999988 665555 333 3788888888999999887763221 1133456789999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 352 ELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 352 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
++.+.+ .+...|..+...+.+.++++.|++.|..+.. |..+...|...|+.+...++-+.....|
T Consensus 673 ~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~ 737 (814)
T 3mkq_A 673 DLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG 737 (814)
T ss_dssp HHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 886543 3678999999999999999999999998742 4556666777888888777766666554
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047221 432 KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 432 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 463 (509)
. ++.-..+|.+.|++++|++++.++.
T Consensus 738 ~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 738 K------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp C------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred c------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 3444555777889999998887764
No 210
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.60 E-value=0.011 Score=48.54 Aligned_cols=78 Identities=8% Similarity=-0.016 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCc----------cHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-
Q 047221 281 LYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDF----------KGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG- 345 (509)
Q Consensus 281 ~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g- 345 (509)
.+++|.+.+++. +.+...|+.+..++...+++ ++|+..|++..+.. +-+..+|..+..+|...|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcc
Confidence 344444444432 33445555454454444443 35555555555432 223444555555554443
Q ss_pred ----------ChHHHHHHHHHHHh
Q 047221 346 ----------QDADACELLEEMLG 359 (509)
Q Consensus 346 ----------~~~~a~~~~~~m~~ 359 (509)
++++|.+.|++..+
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHH
Confidence 45555555554444
No 211
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.53 E-value=0.011 Score=44.62 Aligned_cols=62 Identities=15% Similarity=-0.131 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 047221 263 SCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQ 324 (509)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (509)
+-+...+..+..+|.+.|++++|...|++. +.+...|..+..+|.+.|++++|++.|++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345667788888888889999998888875 45677888888899999999999988887764
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.51 E-value=0.006 Score=59.85 Aligned_cols=87 Identities=11% Similarity=0.043 Sum_probs=62.4
Q ss_pred HcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CC-CCC-HHHHHHHH
Q 047221 378 RVGKFDVAFNFFNQMVKR---GLQPR----LATHAAFIKGYFIFYRYEDAYKYVVLSADK-----YK-SSS-NMLYSLLA 443 (509)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~~~~li 443 (509)
..|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|+.++++..+. |. .|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 347788888888876542 12222 467888888888888888888888876632 21 222 35788888
Q ss_pred HHHHhCCChHHHHHHHHHHHH
Q 047221 444 SLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 444 ~~~~~~g~~~~a~~~~~~m~~ 464 (509)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888889999998888887754
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.49 E-value=0.013 Score=57.36 Aligned_cols=92 Identities=11% Similarity=0.026 Sum_probs=68.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCC-CHHH
Q 047221 373 IVYSCRVGKFDVAFNFFNQMVKR---GLQP----RLATHAAFIKGYFIFYRYEDAYKYVVLSADK-----Y-KSS-SNML 438 (509)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p-~~~~ 438 (509)
+..+.+.|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++..+. | -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566778899999988887753 1222 2467888888999999999999888876642 2 122 2357
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 439 YSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 439 ~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999888764
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.41 E-value=0.16 Score=47.89 Aligned_cols=58 Identities=16% Similarity=0.039 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh--cC---CccHHHHHHHHHHHcCCCCC-hHHHHHHHHHH
Q 047221 282 YEMAKYVIKKTERKVSYYNILIKEMCR--RC---DFKGPRDLLVEMRQVGCEPI-TLTYNYVLGVL 341 (509)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~ 341 (509)
..++.+.....+.+..+|...+.+... .+ ...+|..+|++..+. .|+ ...|..+.-+|
T Consensus 180 ~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 180 QRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVD 243 (372)
T ss_dssp HHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 334445555566667777776655432 22 246777777777765 444 33444333333
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.33 E-value=0.016 Score=56.79 Aligned_cols=93 Identities=11% Similarity=0.032 Sum_probs=71.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-----C-CCC-CHH
Q 047221 337 VLGVLCKNGQDADACELLEEMLGR---NCHP----DAITYEIFIVYSCRVGKFDVAFNFFNQMVKR-----G-LQP-RLA 402 (509)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p-~~~ 402 (509)
.+..+.+.|++++|+.++++..+. -..| ...+++.|..+|...|++++|+.++++..+- | -.| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 345566788999999999888754 1222 2457889999999999999999999987632 2 122 246
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047221 403 THAAFIKGYFIFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 403 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (509)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 789999999999999999999887653
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.31 E-value=0.016 Score=56.88 Aligned_cols=78 Identities=9% Similarity=-0.033 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc--------CCC----HHHHHHHHHH
Q 047221 245 LTKKGIWRVVEVLNQV-----G--GSCLVSGVRALIEMFSVLGLYEMAKYVIKKT--------ERK----VSYYNILIKE 305 (509)
Q Consensus 245 ~~~~~a~~~~~~m~~~-----g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~----~~~~~~li~~ 305 (509)
|++++|+.++++..+. | .+....+++.|..+|...|++++|+.++++. .++ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 3456666666555431 1 1112244556666666666666666655542 111 2345555555
Q ss_pred HHhcCCccHHHHHHHHH
Q 047221 306 MCRRCDFKGPRDLLVEM 322 (509)
Q Consensus 306 ~~~~g~~~~A~~~~~~m 322 (509)
|...|++++|+.++++.
T Consensus 392 ~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 392 YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHH
Confidence 55555555555555443
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.12 E-value=0.14 Score=48.34 Aligned_cols=143 Identities=13% Similarity=0.061 Sum_probs=97.0
Q ss_pred CCChHHHHHHHHHHHh--cC---ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHH---cC--ChHHHH---HHHHHHH
Q 047221 328 EPITLTYNYVLGVLCK--NG---QDADACELLEEMLGRNCHPD-AITYEIFIVYSCR---VG--KFDVAF---NFFNQMV 393 (509)
Q Consensus 328 ~p~~~t~~~li~~~~~--~g---~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~---~g--~~~~a~---~~~~~m~ 393 (509)
+.+...|...+.+... .+ ...+|..+|++..+. .|+ ...|..+.-+|.- .+ ...... ..++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 5677778777766543 33 357899999999886 454 3445544444421 11 111111 1222111
Q ss_pred H-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHH
Q 047221 394 K-RGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVS 472 (509)
Q Consensus 394 ~-~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 472 (509)
. .....+..+|.++...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++... +.|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 1 1225578888888887888899999999999998886 7887888888889999999999999998887 567777
Q ss_pred HHHH
Q 047221 473 VYRR 476 (509)
Q Consensus 473 t~~~ 476 (509)
||.-
T Consensus 345 t~~~ 348 (372)
T 3ly7_A 345 TLYW 348 (372)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6543
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.78 E-value=0.022 Score=42.37 Aligned_cols=53 Identities=8% Similarity=0.066 Sum_probs=23.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 047221 376 SCRVGKFDVAFNFFNQMVKRGLQPRLA-THAAFIKGYFIFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 376 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~ 429 (509)
+.+.|++++|...|++..+.. +.+.. .+..+..+|...|++++|.+.|++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444455554444444331 11233 444444444444444444444444443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.50 E-value=0.046 Score=40.56 Aligned_cols=54 Identities=13% Similarity=-0.030 Sum_probs=25.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCChHHHHHHHHHHHH
Q 047221 410 GYFIFYRYEDAYKYVVLSADKYKSSSNM-LYSLLASLHDKNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 464 (509)
.+.+.|++++|...|++..+... .+.. .|..+...|...|++++|++.|++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444555555555554444321 1223 444444555555555555555555444
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.45 E-value=0.71 Score=36.30 Aligned_cols=140 Identities=11% Similarity=0.045 Sum_probs=90.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047221 342 CKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAY 421 (509)
Q Consensus 342 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 421 (509)
.-.|.++++.++..+.... .+..-||-+|.-....-+-+-..++++.+-+- .|. ..+|++....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHH
Confidence 3467888888888877764 36667777777777767777666666665322 121 1233333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 422 KYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 422 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
..+-.+-. +......-+..+...|+-+.-.+++.++.. +.+|+......+..||.+.|+..+|.+++++.-+.|
T Consensus 82 ~C~~~~n~-----~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINNT-----LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhcc-----hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33322211 333455566667778888888888887544 356777777888888888888888888888888887
Q ss_pred CC
Q 047221 502 LG 503 (509)
Q Consensus 502 ~~ 503 (509)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 75
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.33 E-value=0.6 Score=38.87 Aligned_cols=130 Identities=14% Similarity=0.109 Sum_probs=96.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 047221 339 GVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYE 418 (509)
Q Consensus 339 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 418 (509)
....+.|+++.|.++.+++ -+...|..|-....+.|+++-|++.|.... | +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D---~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH------S---FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C---HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC------C---HHHHHHHHHHhCCHH
Confidence 3456889999999998766 378899999999999999999999998864 2 455666677789988
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 419 DAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 419 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
+-.++-+.....|- ++.-...+...|++++++++|.+. |-.|.... .....|-.+.|.++.+++.
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHhC
Confidence 88777666555541 455566677899999999999654 33332211 1223688899999988764
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.18 E-value=1.2 Score=37.16 Aligned_cols=97 Identities=8% Similarity=0.077 Sum_probs=45.6
Q ss_pred hcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 047221 308 RRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFN 387 (509)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 387 (509)
+.|+++.|.++.+++ -+...|..|.......|+++-|.+.|....+ +..+.-.|.-.|+.+....
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 345555555544433 1344555555555555555555555554432 2233333444455544444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047221 388 FFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVV 425 (509)
Q Consensus 388 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 425 (509)
+-+.....| -++.....+.-.|+++++.++|.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 443333333 13344444445555555555553
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.87 E-value=0.19 Score=40.77 Aligned_cols=86 Identities=10% Similarity=-0.079 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCChHHHH
Q 047221 382 FDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY---RYEDAYKYVVLSADKYKSS--SNMLYSLLASLHDKNNNPVMAK 456 (509)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~ 456 (509)
...+++-|.+..+.|. ++..+...+..++++.+ +++++..+|++..+.. .| ....+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3445555555555443 45666556666666666 5556777777666653 22 2333444666667777777777
Q ss_pred HHHHHHHHCCCCcCH
Q 047221 457 NVLSEMMKNGLRPNV 471 (509)
Q Consensus 457 ~~~~~m~~~g~~p~~ 471 (509)
++++.+.+ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 77777766 45543
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.56 E-value=0.38 Score=36.19 Aligned_cols=70 Identities=9% Similarity=0.012 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCH
Q 047221 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADKY------KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV 471 (509)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 471 (509)
+...+..|...+.+.|+++.|...|+...+.. -.+....+..+..+|.+.|++++|+.++++..+ +.|+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 34445556666666666666666666544320 123345566666777777777777777776665 34443
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.56 E-value=0.29 Score=39.72 Aligned_cols=86 Identities=8% Similarity=-0.161 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCc--CHHHHHHHHHHHHhcCCHHHH
Q 047221 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNN---NPVMAKNVLSEMMKNGLRP--NVSVYRRVLKHLHTSHQEHMA 490 (509)
Q Consensus 416 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~a 490 (509)
.+..+.+-|.+..+.+. ++..+.-.+..++++.+ +.++++.++++..+.. .| +...+-.+.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 45667777777767665 67777777888999988 6679999999998864 34 344555566688999999999
Q ss_pred HHHHHHHHhCCCC
Q 047221 491 KCLSSRYSSLSLG 503 (509)
Q Consensus 491 ~~~~~~m~~~~~~ 503 (509)
.+.++.+.+..+.
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9999999987764
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.05 E-value=0.71 Score=41.85 Aligned_cols=88 Identities=14% Similarity=-0.039 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CChH
Q 047221 383 DVAFNFFNQMVKRGLQPR---LATHAAFIKGYFI-----FYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKN-NNPV 453 (509)
Q Consensus 383 ~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~ 453 (509)
..|...+++..+. .|+ ...|..|...|.+ .|+.++|.+.|++..+....-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4455555555543 344 3456666666666 367777777777666653322345555666666663 6677
Q ss_pred HHHHHHHHHHHCCCC--cCHH
Q 047221 454 MAKNVLSEMMKNGLR--PNVS 472 (509)
Q Consensus 454 ~a~~~~~~m~~~g~~--p~~~ 472 (509)
++.+++++.+..... |+..
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCH
T ss_pred HHHHHHHHHHcCCCCCCCChh
Confidence 777777777665544 5533
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.79 E-value=0.72 Score=33.88 Aligned_cols=46 Identities=11% Similarity=-0.069 Sum_probs=18.1
Q ss_pred cHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047221 313 KGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLG 359 (509)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 359 (509)
++|..+|++..+.. +-+......+...+.+.|++++|...|+.+.+
T Consensus 26 ~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 26 DEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444332 22233333333444444444444444444443
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.65 E-value=0.84 Score=33.51 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 047221 399 PRLATHAAFIKGYFIFYR---YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKN 465 (509)
Q Consensus 399 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 465 (509)
.|...+..+..++...++ .++|..++++..+.. .-+......+...+.+.|++++|++.|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456666667776654444 578888888777654 224556666777778888888888888888775
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.42 E-value=0.47 Score=35.64 Aligned_cols=69 Identities=10% Similarity=-0.029 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHHCC------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047221 435 SNMLYSLLASLHDKNNNPVMAKNVLSEMMKNG------LRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 435 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 503 (509)
+..-+-.|...+.+.|+++.|...|+...+.- -.+....+..+..++.+.|++++|..++++..+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 44455678899999999999999999987631 1245678889999999999999999999999876554
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.48 E-value=1.5 Score=39.66 Aligned_cols=67 Identities=9% Similarity=-0.019 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHCCC
Q 047221 331 TLTYNYVLGVLCKN-----GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRV-GKFDVAFNFFNQMVKRGL 397 (509)
Q Consensus 331 ~~t~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~ 397 (509)
...|..+...|.+. |+.++|.+.|++..+..-.-+..++......+++. |+.+++.+.+++......
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p 271 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCC
Confidence 34555555555553 55555555555555532111244444444555543 555555555555555433
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.88 E-value=0.89 Score=35.44 Aligned_cols=93 Identities=12% Similarity=-0.061 Sum_probs=57.3
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhC
Q 047221 375 YSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYED---AYKYVVLSADKYKSS--SNMLYSLLASLHDKN 449 (509)
Q Consensus 375 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~ 449 (509)
.-........+.+-|.+....|. ++..+--.+..++.+..+... +..+++++...+ .| .....-.|.-++.+.
T Consensus 10 ~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 10 ELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHh
Confidence 33333445555666665555443 566666667777777766555 777777776653 12 223344466778888
Q ss_pred CChHHHHHHHHHHHHCCCCcCH
Q 047221 450 NNPVMAKNVLSEMMKNGLRPNV 471 (509)
Q Consensus 450 g~~~~a~~~~~~m~~~g~~p~~ 471 (509)
|++++|.++++.+.+ +.|+.
T Consensus 88 g~Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp TCHHHHHHHHHHHHH--HCTTC
T ss_pred hhHHHHHHHHHHHHH--hCCCC
Confidence 888888888888877 55643
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.33 E-value=1.4 Score=46.06 Aligned_cols=125 Identities=6% Similarity=-0.018 Sum_probs=78.3
Q ss_pred HHHHHHHHHhccCC-HHHHHHHHHHhhhCCCccCHHHH--HHHHHHHHhccCCHHHHHHHHHHHHHc------CCCC-CH
Q 047221 197 ICSLVIDNCGRLDD-YETMRQLLNDFNVYQVCLNEKAF--GFLPVLISSKALTKKGIWRVVEVLNQV------GGSC-LV 266 (509)
Q Consensus 197 ~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~~p~~~~~--~~ll~~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~ 266 (509)
.-..++..+...++ ++.|..+|+++.... |...++ ..++.........--+|.+++.+..+. ...+ +.
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~ 327 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDA 327 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 33555666666666 588999999987764 333322 223331111222233555555444321 1111 11
Q ss_pred ----------HHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Q 047221 267 ----------SGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMR 323 (509)
Q Consensus 267 ----------~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 323 (509)
.....-..-+...|+++.|.++-++. +.+-.+|..|..+|.+.|+++.|+-.++-+.
T Consensus 328 ~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 328 DSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222344466789999999998874 6678999999999999999999999998773
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.83 E-value=1.5 Score=34.20 Aligned_cols=94 Identities=7% Similarity=-0.171 Sum_probs=66.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHH---HHHHHHHHHHCCCCc--CHHHHHHHHHHHH
Q 047221 408 IKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVM---AKNVLSEMMKNGLRP--NVSVYRRVLKHLH 482 (509)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p--~~~t~~~ll~~~~ 482 (509)
++.......+..+.+-|......|. ++..+--.+..++.+.....+ ++.++++....+ .| .....-.|.-++.
T Consensus 8 l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 8 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHH
Confidence 3333444456667777776666554 555555568888888887766 999999988764 23 2333444555889
Q ss_pred hcCCHHHHHHHHHHHHhCCCC
Q 047221 483 TSHQEHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 483 ~~g~~~~a~~~~~~m~~~~~~ 503 (509)
+.|++++|.+.++.+.+..+.
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT
T ss_pred HhhhHHHHHHHHHHHHHhCCC
Confidence 999999999999999887664
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.78 E-value=2.7 Score=33.77 Aligned_cols=54 Identities=9% Similarity=0.000 Sum_probs=27.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 047221 380 GKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSS 434 (509)
Q Consensus 380 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 434 (509)
++.++|.++|+.+.+.+-+- ...|-...+--.+.|++.+|.+++......+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 45555555555554432121 4444444444455555666665555555554443
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=90.61 E-value=2.7 Score=33.82 Aligned_cols=114 Identities=13% Similarity=0.149 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHcCCh------HHHHHHHHHHHHCCCCCCHH----HHHHHHH---HHHHcCCHHHHHHHHHHHHhCC
Q 047221 365 DAITYEIFIVYSCRVGKF------DVAFNFFNQMVKRGLQPRLA----THAAFIK---GYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 365 ~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~----~~~~li~---~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|--|.- .+...+++++|.++|+.+...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 455666666666666666 6777777766653 444321 1111110 113348899999999998765
Q ss_pred CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 047221 432 KSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHL 481 (509)
Q Consensus 432 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 481 (509)
.+--...|-...+--.+.|+.++|.+++...+..+.+|. ..+.+.++-+
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRNL 138 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHhh
Confidence 333377777777777899999999999999998776654 4555555544
No 236
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.10 E-value=0.66 Score=44.58 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCcCHHHHH
Q 047221 401 LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMK-----NGLRPNVSVYR 475 (509)
Q Consensus 401 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~t~~ 475 (509)
..+...++..+...|+.++|...+..+.... ..+...|..+|.++.+.|+..+|++.|+++.+ .|+.|...+-.
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4455667777888888888888887776543 44777888888888888888888888887654 48888876543
Q ss_pred H
Q 047221 476 R 476 (509)
Q Consensus 476 ~ 476 (509)
.
T Consensus 250 l 250 (388)
T 2ff4_A 250 L 250 (388)
T ss_dssp H
T ss_pred H
Confidence 3
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.70 E-value=1.7 Score=41.65 Aligned_cols=54 Identities=6% Similarity=-0.079 Sum_probs=23.1
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEM 357 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 357 (509)
+..+...|++++|+..+..+.... +.+...|..+|.++.+.|+..+|++.|+..
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444444444443322 233444444444444444444444444443
No 238
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.29 E-value=4.3 Score=42.30 Aligned_cols=26 Identities=4% Similarity=-0.008 Sum_probs=15.7
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHhC
Q 047221 335 NYVLGVLCKNGQ-DADACELLEEMLGR 360 (509)
Q Consensus 335 ~~li~~~~~~g~-~~~a~~~~~~m~~~ 360 (509)
..++..+...|+ .+.|..+|+++.+.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~ 278 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK 278 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh
Confidence 344444444555 46677777777665
No 239
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.28 E-value=9.4 Score=42.33 Aligned_cols=146 Identities=12% Similarity=0.033 Sum_probs=97.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCC---------------------
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEP--------------------- 329 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--------------------- 329 (509)
.++..+.+.|..+.|.++..-.+.+...--.+..+|...|++++|.+.|.+.-. |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccccccc
Confidence 455556667777777776666677766666677788889999999999975421 1111
Q ss_pred --ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 047221 330 --ITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDA----ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT 403 (509)
Q Consensus 330 --~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 403 (509)
-..-|.-++..+.+.|.++.+.+.-....+....-+. ..|..+.+++...|++++|...+-.+.....+ ...
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~c 973 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSC 973 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHH
Confidence 1123567777788888888887776655443211121 25788888889999999998888887766443 445
Q ss_pred HHHHHHHHHHcCCHHH
Q 047221 404 HAAFIKGYFIFYRYED 419 (509)
Q Consensus 404 ~~~li~~~~~~g~~~~ 419 (509)
...||...|..|..+.
T Consensus 974 Lr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 974 LLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHhCCChhh
Confidence 6667776666655444
No 240
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.25 E-value=24 Score=35.89 Aligned_cols=116 Identities=9% Similarity=-0.090 Sum_probs=68.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHH
Q 047221 380 GKFDVAFNFFNQMVKRGLQPRLATHAAFIK----GYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMA 455 (509)
Q Consensus 380 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 455 (509)
.+.+.|...+....+.. ..+......+-. .....+...++...+....... .+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence 36788888888876543 234333332332 2333443455666666554433 2332233344444567999999
Q ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047221 456 KNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 456 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 499 (509)
.+.|+.|...... ...-.--+.+++...|+.++|..+|+.+..
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999888653222 233233445677888999999999888764
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.82 E-value=27 Score=33.92 Aligned_cols=94 Identities=13% Similarity=0.054 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCC--HHH
Q 047221 335 NYVLGVLCKNGQDADACELLEEMLGR--NCHPD---AITYEIFIVYSCRVGKFDVAFNFFNQMVK----RGLQPR--LAT 403 (509)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~--~~~ 403 (509)
..|...|...|++.+|.+++.++... |.... +..|...+..|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666665432 21111 23455556666667777777766666532 111222 133
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 047221 404 HAAFIKGYFIFYRYEDAYKYVVLSA 428 (509)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~ 428 (509)
+..++..+...+++.+|.+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555666666677766666665554
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.37 E-value=4.1 Score=30.11 Aligned_cols=45 Identities=11% Similarity=0.219 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 349 DACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 349 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
++.+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555544
No 243
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.13 E-value=20 Score=39.72 Aligned_cols=146 Identities=13% Similarity=0.043 Sum_probs=93.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----------------
Q 047221 337 VLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP----------------- 399 (509)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----------------- 399 (509)
++..+.+.|..+.+.++.... +-+....-.+-.+|...|++++|.+.|++... |+..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 444455566666665544322 22444444555677888999999999976421 1100
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc
Q 047221 400 ------RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSN----MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP 469 (509)
Q Consensus 400 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 469 (509)
-..-|..++..+.+.|..+.+.++-....+....-+. ..|..+..++...|++++|...+-.+.+...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 1123677888888888888888877665543222121 25788889999999999999988888775544
Q ss_pred CHHHHHHHHHHHHhcCCHHHH
Q 047221 470 NVSVYRRVLKHLHTSHQEHMA 490 (509)
Q Consensus 470 ~~~t~~~ll~~~~~~g~~~~a 490 (509)
......|+..+++.|..+.-
T Consensus 971 -~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHHH
T ss_pred -HHHHHHHHHHHHhCCChhhh
Confidence 34566677777776666554
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.79 E-value=36 Score=32.99 Aligned_cols=188 Identities=9% Similarity=-0.007 Sum_probs=120.4
Q ss_pred cCCccHHHHHHHHHHHc-----CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH----H
Q 047221 309 RCDFKGPRDLLVEMRQV-----GCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR-NCHPDAITYEIFIVYSC----R 378 (509)
Q Consensus 309 ~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~----~ 378 (509)
.|++++|++.+..+.+. +..-.......++..|...|+++...+.+..+.+. |..+. ....++..+. .
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhc
Confidence 36788999988777643 23445677888999999999999998887766554 33332 2334444332 2
Q ss_pred cCChHHHH--HHHHHHH--HCC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHH
Q 047221 379 VGKFDVAF--NFFNQMV--KRG-LQP---RLATHAAFIKGYFIFYRYEDAYKYVVLSADK--YKSSS---NMLYSLLASL 445 (509)
Q Consensus 379 ~g~~~~a~--~~~~~m~--~~g-~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~li~~ 445 (509)
....+... .+.+... ..| +-. .......|...|...|++.+|..++..+... |.... ...|...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 33332211 1111110 011 111 1233467888999999999999999987632 22221 2467778889
Q ss_pred HHhCCChHHHHHHHHHHHH----CCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 446 HDKNNNPVMAKNVLSEMMK----NGLRPNV--SVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 446 ~~~~g~~~~a~~~~~~m~~----~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
|...+++.+|..++++... ....|+. ..|...+..+...+++.+|.+.|.+.-
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999988743 2222222 356667777788899988887776654
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=82.62 E-value=34 Score=32.53 Aligned_cols=237 Identities=8% Similarity=-0.069 Sum_probs=130.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhC-CCcc---CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HH----
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVY-QVCL---NEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCL-VS---- 267 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~p---~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~---- 267 (509)
+...|...|.+.|+.++..+++...... +..| .......++..+....+..+.-.++..+..+..-.-. .+
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~ 100 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777888888888888888776322 1111 3445556666555444545554554444443111111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHc----C-CC-----HHHHHHHHHHHHhcCCccHHHHHHHHHHHc--CCCCChHHHH
Q 047221 268 GVRALIEMFSVLGLYEMAKYVIKKT----E-RK-----VSYYNILIKEMCRRCDFKGPRDLLVEMRQV--GCEPITLTYN 335 (509)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m----~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~ 335 (509)
.-.-|+..|...|++.+|.+++.++ . .| ...|-.-+..|...+++.++...+...... .+.++.....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 1236888999999999998888876 1 12 456777788899999999999988876532 2323333322
Q ss_pred HH--H--HHHH-hcCChHHHHHHHHHHHhC----CCC--CCHHHHHHHHHHHHHcCChHHHHHHHH-HHHHCCCCCCHHH
Q 047221 336 YV--L--GVLC-KNGQDADACELLEEMLGR----NCH--PDAITYEIFIVYSCRVGKFDVAFNFFN-QMVKRGLQPRLAT 403 (509)
Q Consensus 336 ~l--i--~~~~-~~g~~~~a~~~~~~m~~~----g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~ 403 (509)
.+ . -.+. ..+++..|...|-+..+. |.. .+...|..| .+..- ++..+...++. +....-..|....
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~~~pei~~ 258 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITYSGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTTCSHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhccccccccCCccHHH
Confidence 11 1 1234 678999988888765422 110 012234332 22222 23223222222 2111113455666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 047221 404 HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437 (509)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 437 (509)
+..++.+| ..+++.....+++.... .+..|..
T Consensus 259 l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 259 MKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 66677765 45677777776665432 2334443
No 246
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.48 E-value=13 Score=27.53 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=46.4
Q ss_pred HHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHH
Q 047221 240 ISSKAL-TKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIK 304 (509)
Q Consensus 240 ~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~ 304 (509)
++.+.+ +.-+..+-++.+......|+..+..+.+.+|.+.+++..|.++|+.+ +....+|..++.
T Consensus 18 ~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 18 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 555554 45567777777777788888888888888888888888888888876 233344555443
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=81.50 E-value=61 Score=34.69 Aligned_cols=268 Identities=12% Similarity=0.017 Sum_probs=139.4
Q ss_pred HHhccCCHHHHHHHHHHhhhCCCccC-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 047221 204 NCGRLDDYETMRQLLNDFNVYQVCLN-EKAFGFLPVLISSKALTKKGIWRVVEVLNQVGG-------SCLVSGVRALIEM 275 (509)
Q Consensus 204 ~~~~~g~~~~A~~l~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~-------~~~~~~~~~li~~ 275 (509)
+....|+.++++.+++.-...+-..+ ..--.+++.......|...++..++.......- .+....-.+|.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567788888777766543210112 223445555445455545566666665544221 1112222333333
Q ss_pred HHhcCC-HHHHHHHHHH-c-CCCHHH--HHHHHHH--HHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHH--HHHhcCC
Q 047221 276 FSVLGL-YEMAKYVIKK-T-ERKVSY--YNILIKE--MCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLG--VLCKNGQ 346 (509)
Q Consensus 276 ~~~~g~-~~~A~~~~~~-m-~~~~~~--~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~--~~~~~g~ 346 (509)
++-.|. -+++...+.. + ..+.++ ..++.-| |+-.|+-+....++..+.+.. +..+...+.- ++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 333342 2344444443 3 333221 2222223 445566666666666665431 3333333333 3446788
Q ss_pred hHHHHHHHHHHHhCCCCCCHH-HHH---HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 047221 347 DADACELLEEMLGRNCHPDAI-TYE---IFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYK 422 (509)
Q Consensus 347 ~~~a~~~~~~m~~~g~~p~~~-~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 422 (509)
.+.+..+.+.+... .+.. -|. ++..+|+..|+.....++++.+.+.. ..++.-...+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888887764 2332 233 23346777888888878888887652 2223322222223444677667777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 047221 423 YVVLSADKYKSSSNMLYSLLASLHDKNNNP-VMAKNVLSEMMKNGLRPNVSVYRRVLKHLH 482 (509)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 482 (509)
+++.+.+.+ .|.+.--.++.-|....|.. .++++++..+.. -+|..+-..-+.++.
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence 776665543 44454444455555556554 578888888864 245554444444444
No 248
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=81.37 E-value=50 Score=33.60 Aligned_cols=22 Identities=9% Similarity=0.076 Sum_probs=16.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 047221 478 LKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 478 l~~~~~~g~~~~a~~~~~~m~~ 499 (509)
+..+...|....|...+..+.+
T Consensus 388 ~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 388 VRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCChhhHHHHHHHHHh
Confidence 4567788888888888777665
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.29 E-value=18 Score=28.24 Aligned_cols=72 Identities=13% Similarity=-0.006 Sum_probs=38.7
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCH
Q 047221 398 QPRLATHAAFIKGYFIFYR---YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV 471 (509)
Q Consensus 398 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 471 (509)
.|+..|--.+..++.+..+ ..++..+++++...+..-....+-.|.-|+.+.|++++|.++.+.+.+ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 4444444445555555543 334566666655543211233444566666677777777777766665 44543
No 250
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.18 E-value=17 Score=26.77 Aligned_cols=84 Identities=12% Similarity=0.039 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 047221 246 TKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT-ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQ 324 (509)
Q Consensus 246 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (509)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+ -||.+.|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 35666666666655443 2222223344456677777777777666 367776665543 356666666666666666
Q ss_pred cCCCCChHHH
Q 047221 325 VGCEPITLTY 334 (509)
Q Consensus 325 ~g~~p~~~t~ 334 (509)
.| .|....|
T Consensus 97 sg-~p~~q~F 105 (115)
T 2uwj_G 97 SS-DPALADF 105 (115)
T ss_dssp CS-SHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 4444444
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.78 E-value=17 Score=26.73 Aligned_cols=84 Identities=14% Similarity=-0.005 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Q 047221 246 TKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT-ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQ 324 (509)
Q Consensus 246 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 324 (509)
..++|..+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+ -||.+.|-+|-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 35666666666665443 2222223344556677777777777766 367777766543 355666666666666666
Q ss_pred cCCCCChHHH
Q 047221 325 VGCEPITLTY 334 (509)
Q Consensus 325 ~g~~p~~~t~ 334 (509)
.| .|....|
T Consensus 98 sg-~p~~q~F 106 (116)
T 2p58_C 98 SQ-DPRIQTF 106 (116)
T ss_dssp CC-CHHHHHH
T ss_pred CC-CHHHHHH
Confidence 65 4444444
No 252
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.71 E-value=44 Score=30.85 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=87.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMF 276 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (509)
.|-++..-|.+.+++++|++++..-.. .++..--...+ .|.+.-+++...+.++++|......|+..+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-----------~ll~~~Q~~sg-~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-----------TLLRSGQGGSG-GDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----------HHHHTTCHHHH-HHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-----------HHHHCCCcchH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 556666777888999999888765311 11110000111 344555566677788888888777777777
Q ss_pred HhcCCHH--------HHHHHHHHc----CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 047221 277 SVLGLYE--------MAKYVIKKT----ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344 (509)
Q Consensus 277 ~~~g~~~--------~A~~~~~~m----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 344 (509)
.....-+ .|.++=.+. .-|......+...|.+.+++.+|...|- .|-.+...+|..++.-+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHh
Confidence 7665321 122221111 1245555666677777777777766662 13223334554444333333
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 345 GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 345 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
+...+ +|...-.+++ -|.-.++...|..+++...
T Consensus 181 ~~~~e--------------~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 181 DESHT--------------APLYCARAVL-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp SCGGG--------------HHHHHHHHHH-HHHHTTCHHHHHHHHHHHH
T ss_pred cCCcc--------------HHHHHHHHHH-HHHHhCCHHHHHHHHHHHH
Confidence 32111 1222222233 3445677777777665554
No 253
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.56 E-value=3.3 Score=37.00 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=10.2
Q ss_pred HHHHHHhccCCHHHHHHHHH
Q 047221 200 LVIDNCGRLDDYETMRQLLN 219 (509)
Q Consensus 200 ~li~~~~~~g~~~~A~~l~~ 219 (509)
..+...++.|+.+.+..+++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHH
Confidence 33444555666655544443
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.43 E-value=13 Score=29.08 Aligned_cols=44 Identities=11% Similarity=0.203 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 047221 350 ACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 350 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 393 (509)
..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+-++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444445555555555555555555555555555555544
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.42 E-value=46 Score=30.41 Aligned_cols=25 Identities=12% Similarity=-0.091 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 047221 400 RLATHAAFIKGYFIFYRYEDAYKYV 424 (509)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~ 424 (509)
|......+...|.+.|++.+|+..|
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 6667777777788888888877766
No 256
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=75.50 E-value=0.014 Score=56.56 Aligned_cols=209 Identities=9% Similarity=-0.011 Sum_probs=108.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047221 197 ICSLVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMF 276 (509)
Q Consensus 197 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (509)
+|+.|..+..+.+.+.+|++-|-+. -|...|..++. .+.+.|.+++-...+...++..-.|.+. +.|+-+|
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~-~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ay 126 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQ-AANTSGNWEELVKYLQMARKKARESYVE--TELIFAL 126 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHH-HTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHH
Confidence 6666666666666666665544222 14445556666 4445555666666665555443333332 4667777
Q ss_pred HhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHc--------------------CCCCChHHHHH
Q 047221 277 SVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQV--------------------GCEPITLTYNY 336 (509)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------g~~p~~~t~~~ 336 (509)
++.+++.+.++++. .||..-...+.+-|...|.++.|.-+|..+..- .-.-+..||.-
T Consensus 127 Ak~~rL~elEefl~--~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 127 AKTNRLAELEEFIN--GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp HTSCSSSTTTSTTS--CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred HhhCcHHHHHHHHc--CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 77666555433322 233333333444444444444444444332211 01234667777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047221 337 VLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416 (509)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 416 (509)
+-.+|...+.+..|.-.--.+.-. +| -...++.-|-..|.+++-+.+++.-.... ......|+-|.-.|++- +
T Consensus 205 V~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~ 277 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-K 277 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-C
T ss_pred HHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-C
Confidence 777777777776654443333321 11 11235556677777777777776654221 23556667666666664 3
Q ss_pred HHHHHHH
Q 047221 417 YEDAYKY 423 (509)
Q Consensus 417 ~~~A~~~ 423 (509)
.++-++.
T Consensus 278 PeKlmEH 284 (624)
T 3lvg_A 278 PQKMREH 284 (624)
T ss_dssp TTHHHHH
T ss_pred HHHHHHH
Confidence 3443333
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=75.49 E-value=27 Score=27.34 Aligned_cols=65 Identities=11% Similarity=0.001 Sum_probs=45.7
Q ss_pred HHhccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHc----CCCHHHHHHHHH
Q 047221 240 ISSKAL-TKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKT----ERKVSYYNILIK 304 (509)
Q Consensus 240 ~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~li~ 304 (509)
++.+.+ +.-+..+-++.+......|+..+..+.+.+|.+.+++..|.++|+.+ +.....|..++.
T Consensus 61 ~F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lq 130 (152)
T 2y69_E 61 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 130 (152)
T ss_dssp HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHH
Confidence 444444 45566666777777788888888888888888888888888888876 233444555443
No 258
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.21 E-value=37 Score=26.91 Aligned_cols=72 Identities=13% Similarity=-0.006 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCH
Q 047221 398 QPRLATHAAFIKGYFIFYR---YEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNV 471 (509)
Q Consensus 398 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 471 (509)
.|+..+--.+..++.+..+ ..++..+++++...+..-.....-.|.-++.+.|++++|.++.+.+.+ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 4555555555666666554 345666666666543222333444566677777888888777777776 55644
No 259
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=70.77 E-value=18 Score=33.26 Aligned_cols=107 Identities=6% Similarity=-0.108 Sum_probs=53.1
Q ss_pred HHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCChHHHHHHHH
Q 047221 386 FNFFNQMVKRGLQPRLAT--HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSS---NMLYSLLASLHDKNNNPVMAKNVLS 460 (509)
Q Consensus 386 ~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~ 460 (509)
..+.+.+.+.|..++... ..+.+...+..|..+.+..+++. .|..++ ..-++.|..+ ++.|+.+ +.+
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~ 290 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLA-VELKLKK----IAE 290 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cCCcccCcCCCCCCHHHHH-HHcCCHH----HHH
Confidence 344555566776654321 12234445667877776665532 232222 1112233322 4556644 444
Q ss_pred HHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcc
Q 047221 461 EMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGSSVE 507 (509)
Q Consensus 461 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 507 (509)
.+++.|..+|..+ . +..-++.|..+ +++.+.++|-.+++.
T Consensus 291 ~Ll~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 291 LLCKRGASTDCGD--L-VMTARRNYDHS----LVKVLLSHGAKEDFH 330 (337)
T ss_dssp HHHTTSCSSTTCC--H-HHHHHHTTCHH----HHHHHHHTTCCC---
T ss_pred HHHHCCCCCCCCC--H-HHHHHHcCCHH----HHHHHHHCcCCCCCC
Confidence 4566777776544 2 33334556654 566677788877764
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.69 E-value=39 Score=32.58 Aligned_cols=54 Identities=15% Similarity=0.030 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcC-------CCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKTE-------RKVSYYNILIKEMCRRCDFKGPRDLLVEM 322 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (509)
...+...|.+.|+++.|.+++.++. .-...|-.+|..+...+++..|...+.+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3445555555555555555554441 11333444444444444554444444443
No 261
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.45 E-value=19 Score=33.72 Aligned_cols=207 Identities=10% Similarity=0.026 Sum_probs=106.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCCC---HHHHHHHHHHHHhcCC--ccHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKTERK---VSYYNILIKEMCRRCD--FKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK 343 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 343 (509)
...+|.=|...|+.++|...++++... ......+|..-...++ -+.+-.++..+.. ++-+.......+...+..
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle~ 135 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLKD 135 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 568899999999999999999998532 2233334443333332 2334445555553 444443333333333333
Q ss_pred cCCh----HHHHHHH----HHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH---HH---------------CCC
Q 047221 344 NGQD----ADACELL----EEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQM---VK---------------RGL 397 (509)
Q Consensus 344 ~g~~----~~a~~~~----~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m---~~---------------~g~ 397 (509)
..+. ..|..++ .++...++-|-........ +. .-+.+.++++.. .. .|.
T Consensus 136 ldDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~~~~----~~-~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~~~ 210 (358)
T 3eiq_C 136 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKG----TV-DCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQ 210 (358)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGGGC--------CCHHHHHHHHHHHHHHTC---------CCCCCCSS
T ss_pred hhhhccccccHHHHHHHHHHHHHHhCCCCHHHHHHHhh----cc-cchHHHHHHHHHHHHHhccchHHHHHHhcCCCCCC
Confidence 3222 1233333 2333333332111111000 00 111222222211 11 022
Q ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCcCHH
Q 047221 398 QPR---LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNN--PVMAKNVLSEMMKNGLRPNVS 472 (509)
Q Consensus 398 ~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ 472 (509)
.|. ....+.++.=|...|+.++|.+.++++......+ .....++..++-+.++ .+...+++..+...|+-+...
T Consensus 211 ~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 211 QPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred ccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 232 2336788889999999999999999886432222 3345556666665443 456788888888887766555
Q ss_pred HHHHHHHHHH
Q 047221 473 VYRRVLKHLH 482 (509)
Q Consensus 473 t~~~ll~~~~ 482 (509)
....+.+.+.
T Consensus 290 ~~~Gf~~vl~ 299 (358)
T 3eiq_C 290 MKRGYERIYN 299 (358)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.00 E-value=76 Score=30.09 Aligned_cols=158 Identities=10% Similarity=-0.026 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCC---------CHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHcCCCCChHHH----
Q 047221 269 VRALIEMFSVLGLYEMAKYVIKKTER---------KVSYYNILIKEMCRRCD-FKGPRDLLVEMRQVGCEPITLTY---- 334 (509)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~---- 334 (509)
...|...|.+.|+.++...++....+ .......+|..+....+ .+.-.++..+..+.. .-+..+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~ 100 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQS 100 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45677778888888888887777632 23445666666666432 333334444333211 1111233
Q ss_pred --HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHH
Q 047221 335 --NYVLGVLCKNGQDADACELLEEMLGRNCHPD-----AITYEIFIVYSCRVGKFDVAFNFFNQMVKR--GLQPRLATHA 405 (509)
Q Consensus 335 --~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~ 405 (509)
.-++..|...|++.+|.+++.++.+.=-..| ...|-.-+..|...+++.++...+...... .+.++.....
T Consensus 101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a 180 (394)
T 3txn_A 101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG 180 (394)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence 2567778888888888777777765311111 234556667777888888888777765432 2223333222
Q ss_pred HH----HHHHH-HcCCHHHHHHHHHHH
Q 047221 406 AF----IKGYF-IFYRYEDAYKYVVLS 427 (509)
Q Consensus 406 ~l----i~~~~-~~g~~~~A~~~~~~m 427 (509)
.+ --.+. ..+++..|...|-+.
T Consensus 181 ~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 181 ALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 11 11234 567788777766554
No 263
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.20 E-value=35 Score=32.86 Aligned_cols=109 Identities=9% Similarity=-0.007 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHH--
Q 047221 333 TYNYVLGVLCKNGQDADACELLEEMLGRNCH--PDAITYEIFIVYSCRVGKFDVAFNFFNQMVKR-GLQPRLATHAAF-- 407 (509)
Q Consensus 333 t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l-- 407 (509)
+...+...|.+.|+++.|.+.+.++...-.. --...+-.+|..+...+++..+...+.+.... .-.++....+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888888899999999999888775222 22456777788888888888888888876532 011222222222
Q ss_pred --HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047221 408 --IKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSL 441 (509)
Q Consensus 408 --i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 441 (509)
...+...+++..|...|-+....-...+...+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~ 248 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYES 248 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHH
Confidence 1123345777777777766554433334444443
No 264
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.57 E-value=9.7 Score=32.89 Aligned_cols=83 Identities=10% Similarity=0.050 Sum_probs=36.1
Q ss_pred HHHHhcCCccHHHHHHHHHHHcCCCCChHHH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHH
Q 047221 304 KEMCRRCDFKGPRDLLVEMRQVGCEPITLTY--NYVLGVLCKNGQDADACELLEEMLGRNCHPDAI---TYEIFIVYSCR 378 (509)
Q Consensus 304 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~ 378 (509)
...++.|+.+.+..+++.+.+.|..++.... .+.+...+..|+.+ +++.+.+.|..++.. ..+ .+...+.
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~ 88 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQT-AAHLACE 88 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCC-HHHHHHH
Confidence 3344556665555555555555444332211 12233344555554 333334444433321 122 2333345
Q ss_pred cCChHHHHHHHHH
Q 047221 379 VGKFDVAFNFFNQ 391 (509)
Q Consensus 379 ~g~~~~a~~~~~~ 391 (509)
.|+.+-+..+++.
T Consensus 89 ~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 89 HRSPTCLRALLDS 101 (241)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHc
Confidence 6666555554443
No 265
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=67.38 E-value=12 Score=33.26 Aligned_cols=213 Identities=9% Similarity=0.019 Sum_probs=99.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc-C---CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChH---HHHHHHHHHHh
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKT-E---RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITL---TYNYVLGVLCK 343 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~li~~~~~ 343 (509)
+.+...+..|+.+-+..+++.- . +|..-++. +...+..|+. ++++.+.+.|..++.. .++. +...+.
T Consensus 41 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~ 114 (285)
T 1wdy_A 41 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP-FLLAAIAGSV----KLLKLFLSKGADVNECDFYGFTA-FMEAAV 114 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHTCH----HHHHHHHHTTCCTTCBCTTCCBH-HHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH-HHHHHHcCCH----HHHHHHHHcCCCCCccCcccCCH-HHHHHH
Confidence 4556666778887777777652 1 12222222 3333444554 3455555566555432 2233 334455
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHH------------HHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH---HHHHHH
Q 047221 344 NGQDADACELLEEMLGRNCHPDAIT------------YEIFIVYSCRVGKFDVAFNFFNQMVKR-GLQPRL---ATHAAF 407 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~~~g~~p~~~~------------~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~---~~~~~l 407 (509)
.|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+ .+. |..++. .-.+.+
T Consensus 115 ~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~g~t~l 186 (285)
T 1wdy_A 115 YGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL----LDEMGADVNACDNMGRNAL 186 (285)
T ss_dssp TTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHH----HHTSCCCTTCCCTTSCCHH
T ss_pred hCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHH----HHhcCCCCCccCCCCCCHH
Confidence 66654 4444555555444220 11233444556665544443 333 444332 223333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHH---HHHHHHHHHH
Q 047221 408 IKGYFIFYRYEDAYKYVVLSADKYKSSSNML--YSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVS---VYRRVLKHLH 482 (509)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---t~~~ll~~~~ 482 (509)
..+ +..|+.....++++.+.+.|..++... -...+...++.|+.+-+..+++. .|..++.. -.+. +....
T Consensus 187 ~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~-l~~A~ 261 (285)
T 1wdy_A 187 IHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTA-LLLAV 261 (285)
T ss_dssp HHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCH-HHHHH
T ss_pred HHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcH-HHHHH
Confidence 333 445554445566666667766554321 11233444456665443333321 45444322 2223 33334
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCc
Q 047221 483 TSHQEHMAKCLSSRYSSLSLGSSV 506 (509)
Q Consensus 483 ~~g~~~~a~~~~~~m~~~~~~~~~ 506 (509)
+.|..+ +.+.+.+.|..++.
T Consensus 262 ~~~~~~----i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 262 ELKLKK----IAELLCKRGASTDC 281 (285)
T ss_dssp HTTCHH----HHHHHHHHSSCSCC
T ss_pred HcCcHH----HHHHHHHcCCCCCc
Confidence 556554 44555556766654
No 266
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=65.72 E-value=46 Score=25.97 Aligned_cols=73 Identities=10% Similarity=-0.070 Sum_probs=52.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047221 432 KSSSNMLYSLLASLHDKNNNP---VMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGS 504 (509)
Q Consensus 432 ~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 504 (509)
-.|...|--.+..++.+.... .+++.++++..+.+-.-....+-.|.-++.+.|++++|.+..+.+.+..+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 345555544567777777654 4689999998876522234455556668999999999999999999877653
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.39 E-value=45 Score=29.65 Aligned_cols=114 Identities=20% Similarity=0.127 Sum_probs=65.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCH
Q 047221 340 VLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRG--LQPRLATHAAFIKGYFIFYRY 417 (509)
Q Consensus 340 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~ 417 (509)
...+.|++++|+.....-++. -+-|...-..++..+|-.|++++|.+-++...+.. ..|...+|..+|.+=
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~-~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE------ 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA------ 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH------
Confidence 345677888887777766665 34567777777888888888888888777766542 112233444444431
Q ss_pred HHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hCCChHHHHHHHHHHHH
Q 047221 418 EDAYKYVVLSADKYKSS-----SNMLYSLLASLHD--KNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 418 ~~A~~~~~~m~~~~~~p-----~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~ 464 (509)
..=.++...+-.| ...-...++.+.. ..|+.++|.++-..+.+
T Consensus 79 ----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 79 ----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp ----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1112222222221 2223334444443 35788888887777754
No 268
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=64.89 E-value=39 Score=24.85 Aligned_cols=76 Identities=12% Similarity=0.048 Sum_probs=41.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 047221 381 KFDVAFNFFNQMVKRGLQPRLATHAAFI--KGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNV 458 (509)
Q Consensus 381 ~~~~a~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 458 (509)
.-++|..+-+-+...+ + .-...|| ..+.+.|++++|..+.+ .-..||...|.+|... +.|..+++..-
T Consensus 21 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~----~~c~pdlepw~ALce~--rlGl~s~le~r 90 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG---Q-DEAARLIRISSLANQGRYQEALAFAH----GNPWPALEPWFALCEW--HLGLGAALDRR 90 (115)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHGGGT----TCCCGGGHHHHHHHHH--HTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcC----CCCCchHHHHHHHHHH--hcccHHHHHHH
Confidence 4555655555555544 2 2222232 34556677777766653 2335666666655543 66666666666
Q ss_pred HHHHHHCC
Q 047221 459 LSEMMKNG 466 (509)
Q Consensus 459 ~~~m~~~g 466 (509)
+.++...|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 66665554
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.40 E-value=40 Score=24.82 Aligned_cols=76 Identities=9% Similarity=0.005 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHH
Q 047221 381 KFDVAFNFFNQMVKRGLQPRLATHAAFI--KGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNV 458 (509)
Q Consensus 381 ~~~~a~~~~~~m~~~g~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 458 (509)
.-++|..+-+-+...+ + .-...|| ..+.+.|++++|..+.+. -..||...|.+|... +.|..+++..-
T Consensus 22 ~HqEA~tIAdwL~~~~---~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~----~c~pdlepw~ALce~--rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG---E-EEAVQLIRLSSLMNRGDYASALQQGNK----LAYPDLEPWLALCEY--RLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHTT---C-HHHHHHHHHHHHHHTTCHHHHHHHHTT----SCCGGGHHHHHHHHH--HHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---c-HHHHHHHHHHHHHcchhHHHHHHhcCC----CCCchHHHHHHHHHH--hcccHHHHHHH
Confidence 3455555555554443 2 1122222 234556666666666532 235566655555443 55555555555
Q ss_pred HHHHHHCC
Q 047221 459 LSEMMKNG 466 (509)
Q Consensus 459 ~~~m~~~g 466 (509)
+.++...|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 55555443
No 270
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=63.58 E-value=29 Score=31.74 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCcCHHHHHH
Q 047221 404 HAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNN--PVMAKNVLSEMMKNGLRPNVSVYRR 476 (509)
Q Consensus 404 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ 476 (509)
.+.++.-|...|+.++|.+.++++...... ......++..++-+.++ .+.+.+++..+.+.|+-+.......
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~G 242 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRG 242 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 567888899999999999999988643222 12344455555555433 4556788888877666554444333
No 271
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=63.09 E-value=91 Score=28.45 Aligned_cols=167 Identities=10% Similarity=-0.003 Sum_probs=99.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHH----HHHHHHcCCCCChHHHHHHHHHHHh
Q 047221 268 GVRALIEMFSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDL----LVEMRQVGCEPITLTYNYVLGVLCK 343 (509)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~li~~~~~ 343 (509)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++...+.++++|......++..+..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 355777788888999999887643 23345556666555553 5555667888888888888877766
Q ss_pred cCChH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--
Q 047221 344 NGQDA-DACELLEEML----GRN--CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF-- 414 (509)
Q Consensus 344 ~g~~~-~a~~~~~~m~----~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-- 414 (509)
...-+ .=.++++++. +.| ..-+......+-..|.+.|++.+|+.-|- .|-.-|...+..++--+...
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~ 180 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVD 180 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcC
Confidence 43211 1223333333 222 22367778888899999999999887663 12111345555555554444
Q ss_pred -CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047221 415 -YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 415 -g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 463 (509)
|...++--++-+ .+-.|.-.|+...|..+|+...
T Consensus 181 ~~~~~e~dlf~~R---------------aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 181 DIEDSTVAEFFSR---------------LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CCCHHHHHHHHHH---------------HHHHHHHTTBHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHH---------------HHHHHHHhcCHHHHHHHHHHHH
Confidence 554443222211 1223445677888887777664
No 272
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=62.21 E-value=43 Score=27.31 Aligned_cols=125 Identities=10% Similarity=0.044 Sum_probs=60.0
Q ss_pred CCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 047221 361 NCHPDAITYE--IFIVYSCRVGKFDVAFNFFNQMVKR-GLQPRL-------ATHAAFIKGYFIFYRYEDAYKYVVLSADK 430 (509)
Q Consensus 361 g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 430 (509)
|..|....|+ .-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++..+.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4445443332 2356666777777777776665432 123331 24556667777777777777777765432
Q ss_pred -CCCCCH-HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047221 431 -YKSSSN-MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 431 -~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 498 (509)
..-+.. .++..+. ....... ......+...---+..+|.+.|++++|+.+++.+.
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 111111 1111110 0000000 00122233343446778899999999999988754
No 273
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=60.72 E-value=35 Score=27.80 Aligned_cols=126 Identities=11% Similarity=-0.023 Sum_probs=66.9
Q ss_pred cCCCCChHHH--HHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 047221 325 VGCEPITLTY--NYVLGVLCKNGQDADACELLEEMLGR-NCHPDA-------ITYEIFIVYSCRVGKFDVAFNFFNQMVK 394 (509)
Q Consensus 325 ~g~~p~~~t~--~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~ 394 (509)
.|+.|....| -.=+..+...|.++.|.-+.+.+... +..|+. .++..+.+++...+++..|...|++..+
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4566654443 44567788899999998888775543 123442 2556677899999999999999999653
Q ss_pred CC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 047221 395 RG--LQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMM 463 (509)
Q Consensus 395 ~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 463 (509)
.. +.-+..++..+- ....... ......+...---+..+|.+.+++++|+.+++.+.
T Consensus 92 ~~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 92 QKKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 31 111111111110 0000000 00111233333337788889999999999987653
No 274
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=57.99 E-value=1.2e+02 Score=28.04 Aligned_cols=80 Identities=15% Similarity=0.019 Sum_probs=42.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 047221 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLK 479 (509)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 479 (509)
|......+...|.+.+++.+|+..|- .|-.+....|..++.-+...+... .+|...-..++.
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~ 196 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP 196 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH
Confidence 56666777788888888888887771 232333345544443333332211 122222233333
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 047221 480 HLHTSHQEHMAKCLSSRYS 498 (509)
Q Consensus 480 ~~~~~g~~~~a~~~~~~m~ 498 (509)
|.-.++...|..+++...
T Consensus 197 -yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 197 -YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp -HHHTTCHHHHHHHHHHHH
T ss_pred -HHHhCCHHHHHHHHHHHH
Confidence 344567777766655544
No 275
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=57.88 E-value=1.3e+02 Score=28.63 Aligned_cols=32 Identities=6% Similarity=-0.240 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 047221 400 RLATHAAFIKGYFIFYRYEDAYKYVVLSADKY 431 (509)
Q Consensus 400 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 431 (509)
+..--..++.+++...+.+...++++......
T Consensus 266 ~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 266 SSTEKSQIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 34444555666655566666666665555443
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.74 E-value=1e+02 Score=27.36 Aligned_cols=116 Identities=13% Similarity=0.133 Sum_probs=79.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCC
Q 047221 374 VYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYK--SSSNMLYSLLASLHDKNNN 451 (509)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~ 451 (509)
....+.|++++|+.....-++.. +-|...-..|++.+|-.|+++.|.+-++...+... .|-..+|..+|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~------- 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK------- 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH-------
Confidence 44567899999999998888774 55788888999999999999999998887766532 233334555543
Q ss_pred hHHHHHHHHHHHHCCCC-----cCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 047221 452 PVMAKNVLSEMMKNGLR-----PNVSVYRRVLKHLH--TSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 452 ~~~a~~~~~~m~~~g~~-----p~~~t~~~ll~~~~--~~g~~~~a~~~~~~m~~~ 500 (509)
|...-.+...-+-. ....-...++.++. ..|+.++|.++-.+..+.
T Consensus 77 ---aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 ---AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 23333333332222 23345566666664 569999999998888654
No 277
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=57.70 E-value=68 Score=27.07 Aligned_cols=53 Identities=19% Similarity=0.138 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 047221 382 FDVAFNFFNQMVKRGLQPR-LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSS 434 (509)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 434 (509)
..++.++|..|...|+--. ..-|-.....+...|++++|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555554443222 2334444444455555555555555544444444
No 278
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=57.24 E-value=0.21 Score=48.61 Aligned_cols=238 Identities=13% Similarity=0.028 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC---CCHHHHHHHHHHHH
Q 047221 231 KAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLVSGVRALIEMFSVLGLYEMAKYVIKKTE---RKVSYYNILIKEMC 307 (509)
Q Consensus 231 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~li~~~~ 307 (509)
..|..+-.+.+.. +++.+|.+-|-+ .-|...|..+|....+.|.+++-.+.+.... ++...=+.|+-+|+
T Consensus 55 ~VWs~LgkAqL~~-~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayA 127 (624)
T 3lvg_A 55 AVWSQLAKAQLQK-GMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 127 (624)
T ss_dssp CCSSSHHHHTTTS-SSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHH
T ss_pred cHHHHHHHHHHcc-CchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3555555544433 435555443311 2344557788888888999998888887652 44455578889999
Q ss_pred hcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------------------CCCCCHH
Q 047221 308 RRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGR--------------------NCHPDAI 367 (509)
Q Consensus 308 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------g~~p~~~ 367 (509)
+.++..+-.+++ -.||..-...+.+-|...|.++.|.-+|..+... .-.-+..
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 998877655443 2466666677788888888888877777654321 1123667
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHD 447 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 447 (509)
||--+-.+|...+.+.-|.-.--.++-.. | -...++.-|...|.+++-+.+++.-... -.....+|+-|.-.|+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvha---d--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs 274 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVHA---D--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 274 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCCS---S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcccH---H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence 88888889998888877765544444221 1 1234677788899999988888765422 1346678888888888
Q ss_pred hCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047221 448 KNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSS 495 (509)
Q Consensus 448 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 495 (509)
+- ++++.++.++..-.+ + | .--++++|.+...|.++.-++.
T Consensus 275 KY-~PeKlmEHlklf~sr-i--N---ipKviracE~ahLW~ElvfLY~ 315 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSR-V--N---IPKVLRAAEQAHLWAELVFLYD 315 (624)
T ss_dssp SS-CTTHHHHHHTTSSSS-S--C---CTTTHHHHTTTTCHHHHHHHHH
T ss_pred hc-CHHHHHHHHHHHHHh-c--c---HHHHHHHHHHHhhHHHHHHHHh
Confidence 76 455555555432221 1 1 1134555555555555554444
No 279
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=56.96 E-value=2.1e+02 Score=30.67 Aligned_cols=226 Identities=10% Similarity=-0.006 Sum_probs=121.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhhhCCC--c----cCHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCCHH--HH
Q 047221 199 SLVIDNCGRLDDYETMRQLLNDFNVYQV--C----LNEKAFGFLPVLISSKAL-TKKGIWRVVEVLNQVGGSCLVS--GV 269 (509)
Q Consensus 199 ~~li~~~~~~g~~~~A~~l~~~m~~~~~--~----p~~~~~~~ll~~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~--~~ 269 (509)
..+.-+....|..+++..++.......- . .........+.....-.| .-+++...+..+....-. ... .-
T Consensus 415 AllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~-~~~~~Aa 493 (963)
T 4ady_A 415 SLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA-TSGEAAA 493 (963)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHH
Confidence 3344455666766677776666543311 0 012223344443332222 245666666665543211 111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHc--CCCH--HHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHH---HHHHHHH
Q 047221 270 RALIEMFSVLGLYEMAKYVIKKT--ERKV--SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYN---YVLGVLC 342 (509)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m--~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~---~li~~~~ 342 (509)
-+|...|.-.|+-+-...++..+ ..+. .-.-++.-++.-.|+.+.+..+++.+.... .|. .-|. ++.-+|+
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~-vRygaa~alglAya 571 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESL-LRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTT
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhc
Confidence 23334455567777777777654 2222 222333345557899999999998888642 222 2232 3344677
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHH
Q 047221 343 KNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRY-EDAY 421 (509)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~ 421 (509)
..|+.....+++..+.... ..++.....+--++.-.|+.+.+.++++.+.+.+ .|.+.--.++.-+....|.. .+|.
T Consensus 572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 8899888888999888752 2223323223334445677777777777666554 34444444444444444443 6777
Q ss_pred HHHHHHHh
Q 047221 422 KYVVLSAD 429 (509)
Q Consensus 422 ~~~~~m~~ 429 (509)
.++..+..
T Consensus 650 d~L~~L~~ 657 (963)
T 4ady_A 650 DVLDPLTK 657 (963)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcc
Confidence 88888864
No 280
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=56.59 E-value=2.1e+02 Score=30.60 Aligned_cols=158 Identities=9% Similarity=0.039 Sum_probs=92.2
Q ss_pred HHHHHHHHhcCCh---HHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047221 335 NYVLGVLCKNGQD---ADACELLEEMLGRN----CHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAF 407 (509)
Q Consensus 335 ~~li~~~~~~g~~---~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 407 (509)
..++...|+.|.. ++|.+.|+.....+ ++||.. ..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 4567777888874 57888888876542 566643 223334456677777777777777654 45556778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH---CCCCcCHHHHHHHHHHHH
Q 047221 408 IKGYFIFYRYEDAYKYVVLSADKY-KSSSNMLYSLLASLHDKNNN-PVMAKNVLSEMMK---NGLRPNVSVYRRVLKHLH 482 (509)
Q Consensus 408 i~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~---~g~~p~~~t~~~ll~~~~ 482 (509)
+.+++...+.+...++++...... +++.. .. .++.+...+.. .+.|.+.+.+=-+ ..+..+...+..++....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~~-~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQD-AT-STINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGG-HH-HHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhh-HH-HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888899988888888876643 33322 22 23444443322 3445555543211 122333345667777766
Q ss_pred hcCCHHHHHHHHHHHHh
Q 047221 483 TSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 483 ~~g~~~~a~~~~~~m~~ 499 (509)
..-.-++-.+-++...+
T Consensus 843 ~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKK 859 (909)
T ss_dssp TTCCSHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHh
Confidence 54444444444444443
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.46 E-value=98 Score=26.10 Aligned_cols=67 Identities=21% Similarity=0.186 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047221 297 SYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI-TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHP 364 (509)
Q Consensus 297 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 364 (509)
..|-..+..+ ..+...++.++|..|...|+.-. ..-|......+...|++++|.+||..-.+.+-.|
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444444443 13335577788888887776544 3345556666677788888888888777776666
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=51.46 E-value=8.2 Score=33.99 Aligned_cols=191 Identities=9% Similarity=-0.053 Sum_probs=95.0
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCCChHH-------HHHHHHHHH--hcCChHHHHHHHHHHHhCC---------CC-
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEPITLT-------YNYVLGVLC--KNGQDADACELLEEMLGRN---------CH- 363 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~li~~~~--~~g~~~~a~~~~~~m~~~g---------~~- 363 (509)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 4455677888888888887777766655332 344444432 5677777766666543311 00
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHHHH
Q 047221 364 PDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT----------------HAAFIKGYFIFYRYEDAYKYVVLS 427 (509)
Q Consensus 364 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----------------~~~li~~~~~~g~~~~A~~~~~~m 427 (509)
.|..-++.| ...+..|+.+-+ +.+.+.|..++... -.+.+...+..|+.+-+..+++..
T Consensus 89 ~d~~g~t~L-~~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 89 VYYRGQTAL-HIAIERRCKHYV----ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp SSEESBCHH-HHHHHTTCHHHH----HHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred cccCCCCHH-HHHHHcCCHHHH----HHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 011122233 334566776544 44445566555432 223344446678876666555310
Q ss_pred HhCCCCCC---HHHHHHHHHHHHhCCCh----HHHHHHHHHHHHCCCCc----------CHHHHHHHHHHHHhcCCHHHH
Q 047221 428 ADKYKSSS---NMLYSLLASLHDKNNNP----VMAKNVLSEMMKNGLRP----------NVSVYRRVLKHLHTSHQEHMA 490 (509)
Q Consensus 428 ~~~~~~p~---~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p----------~~~t~~~ll~~~~~~g~~~~a 490 (509)
..|..++ ..-++.|..++...... +...++++.+.+.|..+ |..-.+. +...++.|..+-+
T Consensus 164 -~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tp-L~~A~~~g~~~~v 241 (260)
T 3jxi_A 164 -HKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP-LMMAAKTGKIGIF 241 (260)
T ss_dssp -SCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH-HHHHHHTTCHHHH
T ss_pred -ccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCH-HHHHHHcCCHHHH
Confidence 0344332 22233444443322221 11234444444443222 2222223 3444567888888
Q ss_pred HHHHHHHHhC
Q 047221 491 KCLSSRYSSL 500 (509)
Q Consensus 491 ~~~~~~m~~~ 500 (509)
..++++-...
T Consensus 242 ~~Ll~~g~~~ 251 (260)
T 3jxi_A 242 QHIIRREIAD 251 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhCCCc
Confidence 8887765543
No 283
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=50.26 E-value=93 Score=24.60 Aligned_cols=72 Identities=10% Similarity=-0.068 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047221 433 SSSNMLYSLLASLHDKNNNP---VMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSRYSSLSLGS 504 (509)
Q Consensus 433 ~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 504 (509)
.|+..+--.+..++.+.... .+++.++++....+-.-.....-.|.-++.+.|++++|.++.+.+.+..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 45666555577788877664 4688899998875422233334445568999999999999999999887653
No 284
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.55 E-value=76 Score=24.49 Aligned_cols=66 Identities=5% Similarity=-0.107 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCC
Q 047221 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR--YEDAYKYVVLSADKYKSSS 435 (509)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~ 435 (509)
...+|.-|...|+.++|.+.++++.... --...+..++..+.-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4566667777777777777777763211 1123344444445544432 3455566666655554433
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=46.48 E-value=13 Score=31.05 Aligned_cols=38 Identities=13% Similarity=0.258 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCCcCHHHH--HHHHHHHHhcCCHHHHHH
Q 047221 455 AKNVLSEMMKNGLRPNVSVY--RRVLKHLHTSHQEHMAKC 492 (509)
Q Consensus 455 a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~a~~ 492 (509)
-.++.+.+.+.|..++.... .+.+...++.|..+-+..
T Consensus 157 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~ 196 (201)
T 3hra_A 157 YQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKI 196 (201)
T ss_dssp HHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence 35566666666655543211 112333344565554433
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.89 E-value=12 Score=32.23 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=11.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 047221 478 LKHLHTSHQEHMAKCLSSRYSSLS 501 (509)
Q Consensus 478 l~~~~~~g~~~~a~~~~~~m~~~~ 501 (509)
+....+.|..+-+..+++...+.+
T Consensus 214 l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHHcCcHHHHHHHHHhhhccC
Confidence 334455666666666655554443
No 287
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=45.72 E-value=21 Score=29.70 Aligned_cols=131 Identities=8% Similarity=-0.006 Sum_probs=58.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHH
Q 047221 374 VYSCRVGKFDVAFNFFNQMVKRGLQPRLAT---HAAFIKGYFI-FYRYEDAYKYVVLSADKYKSSSNML---YSLLASLH 446 (509)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~---~~~li~~~ 446 (509)
...+..|+.+.-.++.+.+.+.|..++... ++.|..++.. ..+.....++.+.+.+.|..++... .+..+...
T Consensus 43 h~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A 122 (186)
T 3t8k_A 43 YDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNI 122 (186)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGG
T ss_pred HHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHH
Confidence 333445555555555566666665554321 2223222222 1233344455555556655544321 10112212
Q ss_pred HhCCCh-HHHHHHHHHHHH-CCCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047221 447 DKNNNP-VMAKNVLSEMMK-NGLRPNVSVY--RRVLKHLHTSHQEHMAKCLSSRYSSLSLGS 504 (509)
Q Consensus 447 ~~~g~~-~~a~~~~~~m~~-~g~~p~~~t~--~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 504 (509)
+..|.. ..-.++++.+.+ .|..++.... .+.+....+.|..+...-+.+.+++.+++.
T Consensus 123 ~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 123 FNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp GGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred HHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence 222322 234456666666 5655433211 122333456666666666666666666654
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.21 E-value=1.3e+02 Score=26.02 Aligned_cols=88 Identities=14% Similarity=0.164 Sum_probs=46.3
Q ss_pred HHHHHhcCCccHHHHHHHHHHHc--CCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQV--GCEP----ITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYS 376 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 376 (509)
++.+....++++|.+++++..+. +++. +.......+..-.....-.-+..+.+++.. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 44555566666666666554421 1221 111222223332333333344455555533 44566666777888
Q ss_pred HHcCChHHHHHHHHHHH
Q 047221 377 CRVGKFDVAFNFFNQMV 393 (509)
Q Consensus 377 ~~~g~~~~a~~~~~~m~ 393 (509)
.+.|+-++|.++|=+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 88888888888876553
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.81 E-value=82 Score=25.20 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc
Q 047221 420 AYKYVVLSADKYKSSS-NMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP 469 (509)
Q Consensus 420 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 469 (509)
+..+|..|..+|+-.. ...|......+...|++++|.++|+.-++.+-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555555555544322 2234444444555555555555555555555554
No 290
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=41.94 E-value=39 Score=27.96 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=23.3
Q ss_pred HhcCCHHHHHHHHHHcCCCHH--HHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCC
Q 047221 277 SVLGLYEMAKYVIKKTERKVS--YYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPI 330 (509)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 330 (509)
++.|+++....+++.-..... .-.+.+...+..|+.+.-.++.+.+.+.|..++
T Consensus 14 a~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 14 AMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp HHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC
Confidence 345555555555544321111 011233333444444444455555555555444
No 291
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.79 E-value=40 Score=28.77 Aligned_cols=86 Identities=9% Similarity=-0.066 Sum_probs=49.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHH
Q 047221 337 VLGVLCKNGQDADACELLEEMLGRNCHPDAI---TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT--HAAFIKGY 411 (509)
Q Consensus 337 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~ 411 (509)
.+...+..|+.+.+..+++.+.+.|..++.. -++ .+...+..|+.+- ++.+.+.|..++... -...+...
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A 86 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQT-PLHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLA 86 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCC-HHHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHH
Confidence 3445677899998888888777766554432 223 3444556777654 444555665554221 11233334
Q ss_pred HHcCCHHHHHHHHHHH
Q 047221 412 FIFYRYEDAYKYVVLS 427 (509)
Q Consensus 412 ~~~g~~~~A~~~~~~m 427 (509)
+..|+.+.+..+++..
T Consensus 87 ~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHTTCHHHHHHHHHHS
T ss_pred HHcCCHHHHHHHHHcC
Confidence 5667777666666543
No 292
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=39.42 E-value=1e+02 Score=25.00 Aligned_cols=50 Identities=14% Similarity=0.101 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCc
Q 047221 420 AYKYVVLSADKYKSSS-NMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRP 469 (509)
Q Consensus 420 A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 469 (509)
+..+|..|..+|+-.. ...|......+...|++.+|.++|+.-++.+-+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 3344444444443322 2233344444444555555555555555444444
No 293
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=38.99 E-value=2.9e+02 Score=29.65 Aligned_cols=49 Identities=10% Similarity=-0.157 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcC
Q 047221 367 ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRL----ATHAAFIKGYFIFY 415 (509)
Q Consensus 367 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g 415 (509)
.-|..++..+-+.+.++.+.++-+..++.--.-|. ..|+.+..+.+..|
T Consensus 898 ~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 898 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 36888899999999999999988887765322233 35777777777655
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.60 E-value=1.4e+02 Score=23.84 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKT 292 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m 292 (509)
.++.-|...|+.++|.+.++++
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 295
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=37.78 E-value=1.3e+02 Score=23.60 Aligned_cols=57 Identities=7% Similarity=-0.060 Sum_probs=24.4
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 047221 428 ADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSH 485 (509)
Q Consensus 428 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 485 (509)
.+.|.+.+..=. .++..+...+..-.|.++++.+.+.+...+..|....|+.+.+.|
T Consensus 14 ~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 14 KETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344444443321 233333333444445555555544443444444444444444444
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.78 E-value=71 Score=25.57 Aligned_cols=68 Identities=4% Similarity=-0.093 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCH
Q 047221 368 TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR--YEDAYKYVVLSADKYKSSSN 436 (509)
Q Consensus 368 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~ 436 (509)
..+.+|.-|...|+.++|.+.++++.... --...+..++..++-+.++ .+.+..++..+...++-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45667778888888888888888874211 1123445555555555332 34566677776666554443
No 297
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.54 E-value=24 Score=34.77 Aligned_cols=186 Identities=10% Similarity=0.099 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhccCCHHHHHHHHHHh---hhCCCccCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC------
Q 047221 195 SDICSLVIDNCGRLDDYETMRQLLNDF---NVYQVCLNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCL------ 265 (509)
Q Consensus 195 ~~~~~~li~~~~~~g~~~~A~~l~~~m---~~~~~~p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~------ 265 (509)
...+|.+++.|...+.++.|..+..+. ....-......|...++....-.+++.+|.+.+....+.-....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr 310 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFL 310 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHH
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Q 047221 266 VSGVRALIEMFSVLGLYEMAKYVIKK--TERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCK 343 (509)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~--m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 343 (509)
...+.-+|-+=.-.|++.+ ..+|.+ ++.....|..|..++ +.|++++-...++.-... +.+
T Consensus 311 ~~a~K~lI~V~LLlG~iP~-r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~~---------------F~~ 373 (523)
T 4b4t_S 311 QQSNKLHCCIQLLMGDIPE-LSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQL---------------LLK 373 (523)
T ss_dssp HHHHHHHHHHHHHHTCCCC-HHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHH---------------HHH
T ss_pred HHHHHHHHhHHhhcCCCCC-hHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcce---------------ecc
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHHcCChHHHHHHHHHHHHCCC
Q 047221 344 NGQDADACELLEEMLGRNCHPDAITYEIF----IVYSCRVGKFDVAFNFFNQMVKRGL 397 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~l----i~~~~~~g~~~~a~~~~~~m~~~g~ 397 (509)
.|.+.-..++-....+.|+.-=..+|+.+ |..-......++|+.+...|+..|.
T Consensus 374 Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~ 431 (523)
T 4b4t_S 374 DDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGV 431 (523)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTS
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCC
No 298
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.96 E-value=1.7e+02 Score=23.74 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHcCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047221 313 KGPRDLLVEMRQVGCEPIT-LTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDA 366 (509)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 366 (509)
+++.++|..|...|+--.. .-|..-...+...|++.+|.+||..-.+.+..|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4577788888887765443 34455566667778888888888887777777654
No 299
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.64 E-value=2.4e+02 Score=25.51 Aligned_cols=200 Identities=13% Similarity=0.028 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047221 299 YNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ--DADACELLEEMLGRNCHPDAITYEIFIVYS 376 (509)
Q Consensus 299 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 376 (509)
...+|.-|...|+.++|...++++...... ......+|......++ -+.+-.++..+.. ++-+.......+...+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~--~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll 82 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMK--SGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLL 82 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGG--GGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 467889999999999999999987533211 1222334443334443 3346667777764 3433333333332222
Q ss_pred HHcCC----hHHHHHHHH----HHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHh------C--C----CCC
Q 047221 377 CRVGK----FDVAFNFFN----QMVKRGLQPRLATHAAFIKGYFIFYR--YEDAYKYVVLSAD------K--Y----KSS 434 (509)
Q Consensus 377 ~~~g~----~~~a~~~~~----~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~------~--~----~~p 434 (509)
....+ ...|..++. .++..++-|-.......-..-...|. +..|..++. +.. . | ..+
T Consensus 83 ~~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~-~~~~~~~~~~~WG~~~~~~~ 161 (307)
T 2zu6_B 83 KDLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLS-MSKGGKRKDSVWGSGGGQQS 161 (307)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHH-TCC----CCCSSCCCSTTSC
T ss_pred HhhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhc-ccccHhHHhhhcCCCCCCCC
Confidence 22222 223333332 33333332221111100000000000 122222221 110 0 1 111
Q ss_pred CH---HHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCC
Q 047221 435 SN---MLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQ--EHMAKCLSSRYSSLSLG 503 (509)
Q Consensus 435 ~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~--~~~a~~~~~~m~~~~~~ 503 (509)
.. .....++.-|...|+.++|.+.++++....+.+ ..+...+..++-+.++ .+....++..+.+.|+-
T Consensus 162 ~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~l 234 (307)
T 2zu6_B 162 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTI 234 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCC
Confidence 11 246678999999999999999999985322222 2344555555555433 45667788877765543
No 300
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=36.26 E-value=1.8e+02 Score=23.95 Aligned_cols=188 Identities=9% Similarity=0.000 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047221 279 LGLYEMAKYVIKKT-ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEM 357 (509)
Q Consensus 279 ~g~~~~A~~~~~~m-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m 357 (509)
.++.+....+.+.+ .+|...-...+..+.+.|..+....+.+.+. .+|...-...+.++++.|..+....+.+.+
T Consensus 15 ~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 90 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIGDERAVEPLIKAL 90 (211)
T ss_dssp -CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred hcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 047221 358 LGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNM 437 (509)
Q Consensus 358 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 437 (509)
... +..+-...+.++.+.++.+....+.+.+... +..+-...+.++.+.|..+....+.+.+.+. +..
T Consensus 91 ~~~----~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~ 158 (211)
T 3ltm_A 91 KDE----DGWVRQSAAVALGQIGDERAVEPLIKALKDE----DWFVRIAAAFALGEIGDERAVEPLIKALKDE----DGW 158 (211)
T ss_dssp TCS----SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----SHH
T ss_pred cCC----CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHcCC----CHH
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 047221 438 LYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQ 486 (509)
Q Consensus 438 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 486 (509)
.-...+.++.+.+. .++...+.++.+ .++..+-...+.++.+.+.
T Consensus 159 vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 159 VRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHHhcCC
No 301
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=35.47 E-value=42 Score=28.43 Aligned_cols=138 Identities=12% Similarity=0.149 Sum_probs=63.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHcC-----CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCCh---HHHHHHHHHHHh
Q 047221 272 LIEMFSVLGLYEMAKYVIKKTE-----RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPIT---LTYNYVLGVLCK 343 (509)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~li~~~~~ 343 (509)
.+...++.|+++....+++.-+ .|..-++. +...+..|+.+ +++.+.+.|..++. ..++.+ ...+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~-L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTA-LHWACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPL-HIAAS 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCH-HHHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHH-HHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCH-HHHHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHH-HHHHH
Confidence 3556667788888888887632 22222233 33344555543 34444455544432 222233 33345
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHHcCCHH
Q 047221 344 NGQDADACELLEEMLGRNCHPDA---ITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT--HAAFIKGYFIFYRYE 418 (509)
Q Consensus 344 ~g~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~ 418 (509)
.|+.+ +++.+.+.|..++. ...+.+ ...+..|+.+-+ +.+.+.|..++... -...+...+..|+.+
T Consensus 83 ~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 83 AGXDE----IVKALLVKGAHVNAVNQNGCTPL-HYAASKNRHEIA----VMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred cCHHH----HHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 56654 34444455544432 222333 333455665433 33344555444221 112333344556665
Q ss_pred HHHHHH
Q 047221 419 DAYKYV 424 (509)
Q Consensus 419 ~A~~~~ 424 (509)
.+..++
T Consensus 154 ~v~~Ll 159 (231)
T 3aji_A 154 MVHILL 159 (231)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=35.45 E-value=1.5e+02 Score=22.76 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=9.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKT 292 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m 292 (509)
.++.-|...|+.++|.+.++++
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 3444444444444444444444
No 303
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=35.39 E-value=1.2e+02 Score=23.37 Aligned_cols=61 Identities=10% Similarity=-0.052 Sum_probs=31.9
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh
Q 047221 391 QMVKRGLQPRLATHAAFIKGYFIFY-RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNP 452 (509)
Q Consensus 391 ~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 452 (509)
.+.+.|++++..= ..+++.+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-.
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3455566655432 23444444444 4556666666666665555555555455555555543
No 304
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=35.07 E-value=17 Score=32.23 Aligned_cols=118 Identities=10% Similarity=-0.003 Sum_probs=59.0
Q ss_pred HHHHHhcCCccHHHHHHHHHHHcCCCC-------ChHHHHHHHHHHH--hcCChHHHHHHHHHHHh---------CCCC-
Q 047221 303 IKEMCRRCDFKGPRDLLVEMRQVGCEP-------ITLTYNYVLGVLC--KNGQDADACELLEEMLG---------RNCH- 363 (509)
Q Consensus 303 i~~~~~~g~~~~A~~~~~~m~~~g~~p-------~~~t~~~li~~~~--~~g~~~~a~~~~~~m~~---------~g~~- 363 (509)
+...++.|+.+.+..+++.....+... |..-++.|..++. +.|+.+-+..+++.-.. .+..
T Consensus 17 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~ 96 (273)
T 2pnn_A 17 IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTD 96 (273)
T ss_dssp HHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhccccc
Confidence 344456777777777777666555332 3333455555543 24777666666665322 1111
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHHHHcCCHHHHHHHHH
Q 047221 364 PDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLAT----------------HAAFIKGYFIFYRYEDAYKYVV 425 (509)
Q Consensus 364 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----------------~~~li~~~~~~g~~~~A~~~~~ 425 (509)
.|..-++.|..+ +..|+.+-+.. +.+.|..++... -.+.+...+..|+.+-+..+++
T Consensus 97 ~d~~g~tpL~~A-~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 97 SYYKGQTALHIA-IERRNMTLVTL----LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp TTTTTCCHHHHH-HHTTCHHHHHH----HHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCCHHHHH-HHcCCHHHHHH----HHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 122233344333 45676654444 444455544321 1223344456677766665553
No 305
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=34.54 E-value=29 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=10.2
Q ss_pred cCCccHHHHHHHHHHHcCCCC
Q 047221 309 RCDFKGPRDLLVEMRQVGCEP 329 (509)
Q Consensus 309 ~g~~~~A~~~~~~m~~~g~~p 329 (509)
.|+++.|+..+-+|...+..|
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSC
T ss_pred CCCHHHHHHHHHcCcCCCCCC
Confidence 344555555555554444333
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.99 E-value=42 Score=27.66 Aligned_cols=96 Identities=7% Similarity=-0.130 Sum_probs=40.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH-HHCCCCcCHHHHHHHHHHHHhcCCHH
Q 047221 410 GYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEM-MKNGLRPNVSVYRRVLKHLHTSHQEH 488 (509)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m-~~~g~~p~~~t~~~ll~~~~~~g~~~ 488 (509)
..+..|+.+-+..+++.-...--..+..-.+ .+...+..|+.+-+..+++.- ... -..|..-.+.+..++.......
T Consensus 78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~ 155 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGN-ALIPAAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQ 155 (201)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC-SHHHHHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSH
T ss_pred HHHHcCCHHHHHHHHhccCcccccccCCCCc-HHHHHHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchh
Confidence 3345677766666654321100011111111 223334566665444444332 110 0112222333433433322233
Q ss_pred HHHHHHHHHHhCCCCCCcc
Q 047221 489 MAKCLSSRYSSLSLGSSVE 507 (509)
Q Consensus 489 ~a~~~~~~m~~~~~~~~~~ 507 (509)
.-.++++.+.+.|..++..
T Consensus 156 ~~~~~v~~Ll~~ga~~~~~ 174 (201)
T 3hra_A 156 LYQDIVKLLMENGADQSIK 174 (201)
T ss_dssp HHHHHHHHHHHTTCCTTCC
T ss_pred hHHHHHHHHHHCCCCCCcc
Confidence 3466777777888777643
No 307
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.46 E-value=33 Score=29.16 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=6.8
Q ss_pred HHHhcCCHHHHHHHH
Q 047221 480 HLHTSHQEHMAKCLS 494 (509)
Q Consensus 480 ~~~~~g~~~~a~~~~ 494 (509)
..+..|..+-+..++
T Consensus 183 ~A~~~~~~~~v~~Ll 197 (240)
T 3eu9_A 183 WAVLAGNTTVISLLL 197 (240)
T ss_dssp HHHHHTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHH
Confidence 334455555443333
No 308
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=33.02 E-value=1.4e+02 Score=23.65 Aligned_cols=44 Identities=11% Similarity=-0.046 Sum_probs=18.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 047221 407 FIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNN 450 (509)
Q Consensus 407 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 450 (509)
+++.+...+..-.|.++++.+.+.+...+..|.--.+..+...|
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 33333333334444455554444443334443333333333333
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=32.52 E-value=1.2e+02 Score=23.89 Aligned_cols=33 Identities=24% Similarity=0.274 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 047221 453 VMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSH 485 (509)
Q Consensus 453 ~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 485 (509)
-.|.++++.+.+.+...+..|.-.-|+.+.+.|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444444433334444333344444333
No 310
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.29 E-value=1.2e+02 Score=20.74 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=32.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCC
Q 047221 427 SADKYKSSSNMLYSLLASLHDKNN-NPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQ 486 (509)
Q Consensus 427 m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 486 (509)
|.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|.
T Consensus 8 l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 4455655555432 3444444443 444566666666665555566666666666665554
No 311
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=31.34 E-value=2.6e+02 Score=24.17 Aligned_cols=91 Identities=7% Similarity=0.014 Sum_probs=52.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047221 336 YVLGVLCKNGQDADACELLEEMLGR--NCHP----DAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIK 409 (509)
Q Consensus 336 ~li~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 409 (509)
--++.+....++++|..++++..+. +.++ +...-...+..-.....-.-+..+.+++. . .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~-~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL-S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH-T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cCCHHHHHHHHH
Confidence 3467778888888888888876543 2221 11122223333333333344445555552 2 345666666777
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 047221 410 GYFIFYRYEDAYKYVVLSAD 429 (509)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~ 429 (509)
.+.+.|+.++|.++|=+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 77788888888888765543
No 312
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.17 E-value=3.2e+02 Score=24.92 Aligned_cols=129 Identities=12% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCh
Q 047221 306 MCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRV---GKF 382 (509)
Q Consensus 306 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~ 382 (509)
+.+.|++++|++.|+... +...+.......+.+++.+++....+ +....-|..-.+. .+.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icrE-------Yilal~iEl~Rr~l~~~~~ 186 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAI----------YRITLLMVDDAEDEKLAHKILETARE-------YILGLSIELERRSLKEGNT 186 (325)
T ss_dssp HHHTTCHHHHHHHHHHHH----------HHHHTCCBCSSHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTCCTTCH
T ss_pred HHhcCCHHHHHHHHHHHH----------HHhheeeeccHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCcccH
Q ss_pred HHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHH
Q 047221 383 DVAFNFFNQMVKRGLQPR--LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLS 460 (509)
Q Consensus 383 ~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 460 (509)
.+..++-..+..-.++|. ..+....|....|.+++..|-.+-+++.+.+..+... ++|.+++.
T Consensus 187 kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a---------------~qArkil~ 251 (325)
T 3mv2_A 187 VRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA---------------EQARKIKN 251 (325)
T ss_dssp HHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH---------------HHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH---------------HHHHHHHH
Q ss_pred HHHHCC
Q 047221 461 EMMKNG 466 (509)
Q Consensus 461 ~m~~~g 466 (509)
.-.+.+
T Consensus 252 ~ce~~~ 257 (325)
T 3mv2_A 252 KADSMA 257 (325)
T ss_dssp HHHTSC
T ss_pred HHhcCC
No 313
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.03 E-value=1.4e+02 Score=23.57 Aligned_cols=36 Identities=8% Similarity=-0.174 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 047221 416 RYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNN 451 (509)
Q Consensus 416 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 451 (509)
..-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 334455555555554444444444434444444443
No 314
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=29.62 E-value=3.4e+02 Score=25.14 Aligned_cols=78 Identities=4% Similarity=-0.061 Sum_probs=44.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047221 369 YEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR--YEDAYKYVVLSADKYKSSSNMLYSLLASLH 446 (509)
Q Consensus 369 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 446 (509)
.+.+|.-|...|+.++|.+.++++..-... ...+..++..+.-+.++ .+...+++..+...|+-+.......+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 566677777777777777777776422111 23445555555554432 345667777777666665555444444444
Q ss_pred H
Q 047221 447 D 447 (509)
Q Consensus 447 ~ 447 (509)
.
T Consensus 299 ~ 299 (358)
T 3eiq_C 299 N 299 (358)
T ss_dssp H
T ss_pred H
Confidence 3
No 315
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=29.11 E-value=1.1e+02 Score=19.10 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=19.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCccHHHHHHHHH
Q 047221 283 EMAKYVIKKTERKVSYYNILIKEMCRRCDFKGPRDLLVEM 322 (509)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 322 (509)
++-.+.+.+|-|+...+..-=..-...|+.+.|..++-.|
T Consensus 5 e~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 5 ESKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4445555666554333222222223356666666666555
No 316
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=29.08 E-value=2.6e+02 Score=23.50 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=17.8
Q ss_pred CCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Q 047221 310 CDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNG 345 (509)
Q Consensus 310 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 345 (509)
.+.+.|+-.+.+|.+.| .|.-..=..++-+.-..|
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 45556666666666665 444444444444444443
No 317
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=29.06 E-value=1.1e+02 Score=28.34 Aligned_cols=148 Identities=9% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 047221 335 NYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF 414 (509)
Q Consensus 335 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 414 (509)
..++.-|...|+.++|.+.++++......+..+........=.+...-+.+..++..+.+. ...+-..+..++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~----~~is~~~~~~Gf--- 87 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCA----GHLSTAQYYQGL--- 87 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT----TSSCHHHHHHHH---
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC----CCCCHHHHHHHH---
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 047221 415 YRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNP----VMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMA 490 (509)
Q Consensus 415 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 490 (509)
+...+.++++.-. .|....+-.-+-+.+-.... +-...+.+.+.+.|..- .....++..+.+....+.+
T Consensus 88 ---~~~~~~l~Dl~lD--iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~--~fl~~vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 88 ---YEILELAEDMEID--IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAA--SLLLEILGLLCKSMGPKKV 160 (339)
T ss_dssp ---HHHHHHHHHHTTT--CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHH--HHHHHHHHHHHHHHCHHHH
T ss_pred ---HHHHhhChHhhcC--ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHH--HHHHHHHHHHHHHcCHHHH
Q ss_pred HHHHHH
Q 047221 491 KCLSSR 496 (509)
Q Consensus 491 ~~~~~~ 496 (509)
.++|++
T Consensus 161 ~~~~~~ 166 (339)
T 1ug3_A 161 GTLWRE 166 (339)
T ss_dssp HHHHHH
T ss_pred HHHHHH
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.48 E-value=1.4e+02 Score=25.62 Aligned_cols=51 Identities=4% Similarity=-0.038 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 047221 384 VAFNFFNQMVKRGLQPR-LATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSS 434 (509)
Q Consensus 384 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 434 (509)
++.++|..|...|+--. ..-|-.....+...|++.+|.++|+.-.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44445555544443222 2234444444444455555555554444444333
No 319
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.23 E-value=2.3e+02 Score=22.60 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047221 312 FKGPRDLLVEMRQVGCEPI-TLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPD 365 (509)
Q Consensus 312 ~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 365 (509)
.+++.++|..|...|+--. ..-|..-...+...|++++|.+||..-.+.+-.|-
T Consensus 81 ~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 81 NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3457788888887776544 33445566666777888888888887777766663
No 320
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.32 E-value=1.4e+02 Score=26.88 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=17.6
Q ss_pred HHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 047221 252 RVVEVLNQVGGSCLVSG--VRALIEMFSVLGLYEMAKYVIK 290 (509)
Q Consensus 252 ~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~ 290 (509)
.+.+.+.+.|..++... ..+.+...+..|..+.+..+++
T Consensus 220 ~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 220 AITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 34444555555443211 1123344445566655555544
No 321
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=27.26 E-value=5.9e+02 Score=27.10 Aligned_cols=158 Identities=8% Similarity=-0.035 Sum_probs=90.8
Q ss_pred HHHHHHHHhcCC---ccHHHHHHHHHHHcC----CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047221 300 NILIKEMCRRCD---FKGPRDLLVEMRQVG----CEPITLTYNYVLGVLCKNGQDADACELLEEMLGRNCHPDAITYEIF 372 (509)
Q Consensus 300 ~~li~~~~~~g~---~~~A~~~~~~m~~~g----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 372 (509)
..++...|+.|. .++|.+.|++....+ +.||... .+...-.+.|..++-..+++..... .+..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~--~vy~~~~~~g~~~~~~~l~~~~~~~---~~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRS--TIYCNAIAQGGQDQWDFAWGQLQQA---QLVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHH--HHHHHHHHHSCHHHHHHHHHHHHHC---CSHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHH--HHHHHHHHhCCHHHHHHHHHHHHcc---CCHHHHHHH
Confidence 456677777776 557888888776532 5666543 2233334567777767777777765 244556778
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHH
Q 047221 373 IVYSCRVGKFDVAFNFFNQMVKRG-LQPRLATHAAFIKGYFIFY-RYEDAYKYVVLSAD---KYKSSSNMLYSLLASLHD 447 (509)
Q Consensus 373 i~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~ 447 (509)
+.+++...+.+...++++...... +++. .. ..++.+..... ..+.|.+.+.+=-+ .........+..+|...+
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~-~~~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-DA-TSTINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GH-HHHHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-hH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888888888888887765432 3322 12 22333333322 23445555543111 112223334667787777
Q ss_pred hCCChHHHHHHHHHHHH
Q 047221 448 KNNNPVMAKNVLSEMMK 464 (509)
Q Consensus 448 ~~g~~~~a~~~~~~m~~ 464 (509)
..-.-++-++-++...+
T Consensus 843 ~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKK 859 (909)
T ss_dssp TTCCSHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHh
Confidence 66655555555565554
No 322
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=26.56 E-value=1.5e+02 Score=25.41 Aligned_cols=60 Identities=12% Similarity=-0.012 Sum_probs=36.1
Q ss_pred cCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047221 228 LNEKAFGFLPVLISSKALTKKGIWRVVEVLNQVGGSCLV-SGVRALIEMFSVLGLYEMAKYVIKK 291 (509)
Q Consensus 228 p~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 291 (509)
-|..-...-|. ++.. .++...+|..|...|+.... .-|-.....+-..|++.+|.++|+.
T Consensus 115 nD~RyLklWl~-Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 115 DDVRYLRIWMQ-YVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp TCHHHHHHHHH-HHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 35544444444 3332 34666777777776655443 3456667777777777777777765
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=26.43 E-value=2.3e+02 Score=22.08 Aligned_cols=58 Identities=9% Similarity=-0.042 Sum_probs=24.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 047221 392 MVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNN 450 (509)
Q Consensus 392 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 450 (509)
+.+.|++++..= ..+++.+...+..-.|.++++.+.+.+...+..|..-.+..+...|
T Consensus 13 l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 334444444322 2233333333344445555555544444444444433444444433
No 324
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=26.12 E-value=4.4e+02 Score=25.23 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=19.6
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047221 378 RVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411 (509)
Q Consensus 378 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (509)
+.++.+.|+.++.+|.+.|..|....-..++.++
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3466777777777777766655444444334443
No 325
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.71 E-value=75 Score=28.20 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=8.4
Q ss_pred HHHHcCChHHHHHHHHH
Q 047221 375 YSCRVGKFDVAFNFFNQ 391 (509)
Q Consensus 375 ~~~~~g~~~~a~~~~~~ 391 (509)
..+..|+.+-+..+++.
T Consensus 167 ~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 167 ITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHc
Confidence 33455665555444443
No 326
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=24.59 E-value=3.1e+02 Score=22.98 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=8.4
Q ss_pred CChHHHHHHHHHHHHCC
Q 047221 380 GKFDVAFNFFNQMVKRG 396 (509)
Q Consensus 380 g~~~~a~~~~~~m~~~g 396 (509)
.+.+.|+-.+-+|.+.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 44445555555555444
No 327
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.35 E-value=4.7e+02 Score=24.99 Aligned_cols=62 Identities=11% Similarity=-0.030 Sum_probs=43.2
Q ss_pred HHHHHH---HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHCCCC
Q 047221 407 FIKGYF---IFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNP-----VMAKNVLSEMMKNGLR 468 (509)
Q Consensus 407 li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-----~~a~~~~~~m~~~g~~ 468 (509)
+|.++. +.++.+.|+.++.+|.+.|..|....-..++.+...-|.- ..|...++.....|++
T Consensus 258 ~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 258 LISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCCc
Confidence 444443 4579999999999999999888777666677776666653 3455666666666653
No 328
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=24.21 E-value=69 Score=28.44 Aligned_cols=203 Identities=8% Similarity=-0.005 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChH---HHHHHHHHHHhcCC
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKT-ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITL---TYNYVLGVLCKNGQ 346 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~li~~~~~~g~ 346 (509)
+.+...+..|+.+.+..+++.- ..+...-.+.+...+..|+.+- ++.+.+.|..++.. -++. +...+..|+
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~ 107 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKI----VKILLFSGLDDSQFDDKGNTA-LYYAVDSGN 107 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHH----HHHHHHTTCCTTCCCTTSCCH-HHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCcH-HHHHHHcCC
Confidence 3455566678888888877762 1111111234445556666543 33444556554432 2233 334456677
Q ss_pred hHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 047221 347 DADACELLEEMLGRNCHPDAI---TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQP-RLATHAAFIKGYFIFYRYEDAYK 422 (509)
Q Consensus 347 ~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~ 422 (509)
.+-+.-+++ .|..++.. .+.+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|+.+-+..
T Consensus 108 ~~~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~ 179 (285)
T 3kea_A 108 MQTVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMIL 179 (285)
T ss_dssp HHHHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHH
Confidence 665544444 34433322 223444555666776544 3444444333 21122334445567788877777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047221 423 YVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQEHMAKCLSSR 496 (509)
Q Consensus 423 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 496 (509)
+++.-...... +..-++..+...+..|+. ++.+.+.+.|..++...... ...|..+-+..+++.
T Consensus 180 Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~~~a-----~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 180 LLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSANLEN-----VLLDDAEIAKMIIEK 243 (285)
T ss_dssp HHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTTGGG-----GTTTCHHHHHHHHHH
T ss_pred HHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCChhh-----hhcCCHHHHHHHHHc
Confidence 66553332221 111112223333344543 45555666677766554211 335666655555544
No 329
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=23.68 E-value=1.1e+02 Score=25.78 Aligned_cols=57 Identities=11% Similarity=-0.009 Sum_probs=32.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCc---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047221 443 ASLHDKNNNPVMAKNVLSEMMKNGLRP---------NVSVYRRVLKHLHTSHQEHMAKCLSSRYSSL 500 (509)
Q Consensus 443 i~~~~~~g~~~~a~~~~~~m~~~g~~p---------~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 500 (509)
+...+..|+.+-+.++++.+.+.|..+ |..-.+. +...++.|..+-+..+++.=...
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHHHHHhcCccc
Confidence 334456677777777777777765432 2222233 33445667777777776655443
No 330
>1ckk_B Camkk, protein (RAT Ca2+/calmodulin dependent protein kinase); complex (calmodulin/peptide), calmodulin-peptide complex; NMR {Rattus norvegicus}
Probab=23.61 E-value=21 Score=18.84 Aligned_cols=12 Identities=42% Similarity=0.625 Sum_probs=9.1
Q ss_pred cccccccccCch
Q 047221 9 KNLRYLSIANPY 20 (509)
Q Consensus 9 ~~~~~~~~~~~~ 20 (509)
.=+|.++++||.
T Consensus 15 ~Mlr~~sf~nPf 26 (26)
T 1ckk_B 15 SMLRKRSFGNPF 26 (26)
T ss_dssp HHCSSSCCCCCC
T ss_pred HHhhcccccCCC
Confidence 346888999984
No 331
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=23.61 E-value=3.2e+02 Score=22.82 Aligned_cols=33 Identities=12% Similarity=0.205 Sum_probs=16.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047221 379 VGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGY 411 (509)
Q Consensus 379 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 411 (509)
..+.+.|+-.+-+|++.|-.|.-+.-..++-+.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 355666666666666555444443333334333
No 332
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=23.59 E-value=2.8e+02 Score=24.72 Aligned_cols=115 Identities=11% Similarity=0.104 Sum_probs=63.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHcC-----CCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChH---HHHHHHHHHH
Q 047221 271 ALIEMFSVLGLYEMAKYVIKKTE-----RKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITL---TYNYVLGVLC 342 (509)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~li~~~~ 342 (509)
..+...++.|+.+....++.... .|..-+ +.+...+..|+.+ +++.+.+.|..++.. -++ .+...+
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~-t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~ 99 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKS-TPLHLAAGYNRVR----IVQLLLQHGADVHAKDKGGLV-PLHNAC 99 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCC-HHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCC-CHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCCc-HHHHHH
Confidence 45556667899999999887642 222222 3444455667754 444555566555432 222 334455
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 047221 343 KNGQDADACELLEEMLGRNCHPDAI---TYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPR 400 (509)
Q Consensus 343 ~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 400 (509)
..|+.+ +++.+.+.|..++.. .++.| ...+..|+.+-+ +.+.+.|..|+
T Consensus 100 ~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v----~~Ll~~g~~~~ 151 (351)
T 3utm_A 100 SYGHYE----VTELLLKHGACVNAMDLWQFTPL-HEAASKNRVEVC----SLLLSHGADPT 151 (351)
T ss_dssp HTTCHH----HHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHH----HHHHHTTCCTT
T ss_pred HCCCHH----HHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHH----HHHHHcCCCCc
Confidence 677765 445555566555432 23344 444567776544 44455666654
No 333
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=23.38 E-value=3.1e+02 Score=22.52 Aligned_cols=52 Identities=15% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC-----------------HHHHHHHHHHHHhCCChHHHHHHHHH
Q 047221 410 GYFIFYRYEDAYKYVVLSADKYKSSS-----------------NMLYSLLASLHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 410 ~~~~~g~~~~A~~~~~~m~~~~~~p~-----------------~~~~~~li~~~~~~g~~~~a~~~~~~ 461 (509)
+|-+..+..+|...++.+.+..+..| ...|+.+...|.+.|+.++|+..+..
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
No 334
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.27 E-value=2.2e+02 Score=22.78 Aligned_cols=58 Identities=7% Similarity=-0.074 Sum_probs=27.2
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCC
Q 047221 393 VKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADK--YKSSSNMLYSLLASLHDKNNN 451 (509)
Q Consensus 393 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~ 451 (509)
.+.|++.+.. -..+++.+...+..-.|.++++.+.+. +...+..|.---+..+...|-
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3345555432 233444444444455555555555554 444444444434444444443
No 335
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=22.64 E-value=3.1e+02 Score=22.21 Aligned_cols=188 Identities=9% Similarity=-0.002 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047221 280 GLYEMAKYVIKKT-ERKVSYYNILIKEMCRRCDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEML 358 (509)
Q Consensus 280 g~~~~A~~~~~~m-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~ 358 (509)
.....-..+++.+ .+|...-...+.++.+.+..+....+.+.+. .+|...-...+.++++.|..+....+.+.+.
T Consensus 11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~----~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~ 86 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK----DEDAWVRRAAADALGQIGDERAVEPLIKALK 86 (201)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT
T ss_pred cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHc----CCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047221 359 GRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNML 438 (509)
Q Consensus 359 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 438 (509)
.. +..+-...+.++.+.++.+....+.+.+... +..+-...+.+..+.|+.+....+.+.+.+. +...
T Consensus 87 d~----~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~----~~~v 154 (201)
T 3ltj_A 87 DE----DGWVRQSAAVALGQIGDERAVEPLIKALKDE----DWFVRIAAAFALGEIGDERAVEPLIKALKDE----DGWV 154 (201)
T ss_dssp CS----SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS----SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCS----SHHH
T ss_pred CC----CHHHHHHHHHHHHHhCcHHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC----CHHH
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcCCH
Q 047221 439 YSLLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSHQE 487 (509)
Q Consensus 439 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 487 (509)
-...+.++.+.|. .++...+..+.+. ++..+-...+.++.+.+..
T Consensus 155 r~~A~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 155 RQSAADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHHHHhh
No 336
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.54 E-value=2.6e+02 Score=21.40 Aligned_cols=59 Identities=8% Similarity=-0.024 Sum_probs=33.5
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 047221 357 MLGRNCHPDAITYEIFIVYSCRVG-KFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYR 416 (509)
Q Consensus 357 m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 416 (509)
+.+.|.+++..-. .++..+...+ ..-.|.++++.+.+.+...+..|.---++.+...|-
T Consensus 9 l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 4556666554333 3445555444 556677777777776655566555555555555553
No 337
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.45 E-value=1.9e+02 Score=19.68 Aligned_cols=8 Identities=0% Similarity=0.567 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 047221 386 FNFFNQMV 393 (509)
Q Consensus 386 ~~~~~~m~ 393 (509)
.++++.+.
T Consensus 37 ~el~~~l~ 44 (83)
T 2fu4_A 37 EDLYKRLI 44 (83)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 338
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=21.95 E-value=1.7e+02 Score=24.43 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=12.4
Q ss_pred HHHHhccCCHHHHHHHHHH
Q 047221 202 IDNCGRLDDYETMRQLLND 220 (509)
Q Consensus 202 i~~~~~~g~~~~A~~l~~~ 220 (509)
+...++.|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4555667777777766665
No 339
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=21.88 E-value=6.4e+02 Score=25.64 Aligned_cols=275 Identities=12% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHhhhCCCccCHHHHHHHHHHHHhccC---CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Q 047221 200 LVIDNCGRLDDYETMRQLLNDFNVYQVCLNEKAFGFLPVLISSKAL---TKKGIWRVVEVLNQ-VGGSCLVSGVRALIEM 275 (509)
Q Consensus 200 ~li~~~~~~g~~~~A~~l~~~m~~~~~~p~~~~~~~ll~~~~~~~~---~~~~a~~~~~~m~~-~g~~~~~~~~~~li~~ 275 (509)
++|-.|.|+|++++|.++.++....--..+ ..|...+..++...+ ..+...++..+-.+ ....++..-|...+-.
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d-~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~ 235 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVE-QSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYK 235 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC------CHHHHHHHC------------------------------CHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhh-HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q ss_pred HHhcCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------CccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Q 047221 276 FSVLGLYEMAKYVIKKTERKVSYYNILIKEMCRRC-----------DFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKN 344 (509)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 344 (509)
..-.-+.. ..-...+..++.-|--+=-.+++.+ -+++....+.+..+.-+.+ ....++.-.
T Consensus 236 Iig~cD~~--~~~~~~v~~siED~LWl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~------lYf~vLlLt 307 (661)
T 2qx5_A 236 LIGRCDLS--RKNIPAVTLSIEDWLWMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN------YYLQTLLLS 307 (661)
T ss_dssp HHHTCCGG--GCCCGGGCCSHHHHHHHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT------CHHHHHHHT
T ss_pred HHhccccc--ccchHHHhccHHHHHHHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh------HHHHHHHHH
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHH
Q 047221 345 GQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIF---YRYEDAY 421 (509)
Q Consensus 345 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~ 421 (509)
|+++.|.+.+... ...+.+++...+.-|.-.+- -+.+......--..-+..||..|.+. .+..+|.
T Consensus 308 gqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~Al 376 (661)
T 2qx5_A 308 GLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVAV 376 (661)
T ss_dssp TCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHHHHH
T ss_pred hhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhhcCCHHHHH
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHhCCChHHHH-----------HHHHHHHHCCCCcCH------HHHHHHHHHHHh
Q 047221 422 KYVVLSADKY-KSSSNMLYSLLASLHDKNNNPVMAK-----------NVLSEMMKNGLRPNV------SVYRRVLKHLHT 483 (509)
Q Consensus 422 ~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~-----------~~~~~m~~~g~~p~~------~t~~~ll~~~~~ 483 (509)
+.|--+...+ ..-....+.++-......+.++.-+ .++++-... +..+. ........-+..
T Consensus 377 ~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~l-i~l~d~~~~~~~i~~~aA~~ae~ 455 (661)
T 2qx5_A 377 EYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPL-LHVRDEKEFLHTITEQAARRADE 455 (661)
T ss_dssp HHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGG-GTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcc-cccccHHHHHHHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHH
Q 047221 484 SHQEHMAKCLSS 495 (509)
Q Consensus 484 ~g~~~~a~~~~~ 495 (509)
.|++++|..++.
T Consensus 456 ~G~~~dAi~LY~ 467 (661)
T 2qx5_A 456 DGRIYDSILLYQ 467 (661)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
No 340
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=21.78 E-value=62 Score=27.46 Aligned_cols=22 Identities=18% Similarity=0.062 Sum_probs=14.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 047221 478 LKHLHTSHQEHMAKCLSSRYSS 499 (509)
Q Consensus 478 l~~~~~~g~~~~a~~~~~~m~~ 499 (509)
+......|+.+.++++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3344566777777777777765
No 341
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.46 E-value=1.4e+02 Score=22.65 Aligned_cols=42 Identities=10% Similarity=-0.180 Sum_probs=22.6
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047221 318 LLVEMRQVGCEPITLTYNYVLGVLCKNGQDADACELLEEMLG 359 (509)
Q Consensus 318 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~m~~ 359 (509)
+|+.+....+.|+...--.-|..+...++++.|.+++..+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555544444333344445566677777766666554
No 342
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=21.22 E-value=3.8e+02 Score=22.73 Aligned_cols=111 Identities=10% Similarity=0.031 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCChHHHHHHHHH
Q 047221 382 FDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFYRYEDAYKYVVLSADKYKSSSNMLYSLLASLHDKNNNPVMAKNVLSE 461 (509)
Q Consensus 382 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 461 (509)
.+.+..+++.+.+.|+--|..--.+.+....+.+.+ ....+-.++..+|+..+.+ ...+..+......+.|.++.++
T Consensus 92 ~e~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~~~~I--~~al~~~~~~~e~e~a~~l~~K 168 (221)
T 3d5l_A 92 EEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIGESDI--DDALTQFTPEVQAELAKKLALK 168 (221)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCCHHHH--HHHGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCCHHHH--HHHHHhCCHHHHHHHHHHHHHH
Confidence 455666677777777665555555555555442111 2344555666777654332 1111111000112234444443
Q ss_pred HHHC-CCCcCHHHHHHHHHHHHhcCC-HHHHHHHHH
Q 047221 462 MMKN-GLRPNVSVYRRVLKHLHTSHQ-EHMAKCLSS 495 (509)
Q Consensus 462 m~~~-g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~ 495 (509)
-... .-.++.....-++..+.+.|- ++.+..+++
T Consensus 169 k~~~~~~~~~~~~k~K~~~~L~rrGFs~~~I~~vl~ 204 (221)
T 3d5l_A 169 LFRRYRNQPERRREQKVQQGLTTKGFSSSVYEMIKD 204 (221)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHTT
T ss_pred HHhhccCCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3221 111223445666666666664 444444443
No 343
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.85 E-value=3.8e+02 Score=22.63 Aligned_cols=92 Identities=10% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHhc---CCccHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-----hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047221 302 LIKEMCRR---CDFKGPRDLLVEMRQVGCEPITLTYNYVLGVLCKNGQ-----DADACELLEEMLGRNCHPDAITYEIFI 373 (509)
Q Consensus 302 li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-----~~~a~~~~~~m~~~g~~p~~~~~~~li 373 (509)
+|+++.|+ .+.+.|+-.+.+|.+.|-.|.-..=..++-+.-..|. +..|...++....-|.+--.....-.+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHHcCChHHHHHHHHHHHH
Q 047221 374 VYSCRVGKFDVAFNFFNQMVK 394 (509)
Q Consensus 374 ~~~~~~g~~~~a~~~~~~m~~ 394 (509)
-.++..-+-..+ ..++...+
T Consensus 118 iyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHcCCccHHH-HHHHHHHH
No 344
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=20.68 E-value=2.8e+02 Score=21.63 Aligned_cols=58 Identities=5% Similarity=-0.031 Sum_probs=28.1
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 047221 356 EMLGRNCHPDAITYEIFIVYSCRVGKFDVAFNFFNQMVKRGLQPRLATHAAFIKGYFIFY 415 (509)
Q Consensus 356 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 415 (509)
.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|.---++.+...|
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3444555554432 22333333444 4456666666665554445544444445555444
No 345
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.62 E-value=1.6e+02 Score=22.53 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=0.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHhcC
Q 047221 441 LLASLHDKNNNPVMAKNVLSEMMKNGLRPNVSVYRRVLKHLHTSH 485 (509)
Q Consensus 441 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 485 (509)
.++..+...+..-.|.++++.+.+.+...+..|....|+.+.+.|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 346
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=20.45 E-value=3.8e+02 Score=22.42 Aligned_cols=46 Identities=17% Similarity=0.184 Sum_probs=33.4
Q ss_pred HHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 047221 335 NYVLGVLCK---NGQDADACELLEEMLGRNCHPDAITYEIFIVYSCRVG 380 (509)
Q Consensus 335 ~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 380 (509)
--+|+++.| ..+.+.|+-.+.+|.+.|-.|.-..-..++.+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 345666654 5789999999999999987777766666666665444
No 347
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.16 E-value=76 Score=20.69 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q 047221 313 KGPRDLLVEMRQVGCEPITLTYNYVLGVL 341 (509)
Q Consensus 313 ~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 341 (509)
++|.+.|.+|++..-.+..-||.-.|...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 56777776666543334445666666655
Done!