Your job contains 1 sequence.
>047222
AYENHHDAAFERKYRCYPISFIDKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTS
AGRVTYCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFL
DISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIP
PLDFKEPEKPSSSSLSNRTLPEVKEEPPLDFKGPEKPSSSSLSNRTPPEVKEEPPKKIAK
FSPFTGSGRCLNGKSSTQPTVSPSSPLIDNPQQNAANGINGSKSSSASSRQKSGKLVFGS
NANQSSNGTPKVLPKSSSGEPPQVEEKPKFQAFTGKKYSLRG
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 047222
(342 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2066122 - symbol:AT2G29070 species:3702 "Arabi... 837 1.5e-83 1
TAIR|locus:2050054 - symbol:UFD1 "AT2G21270" species:3702... 813 5.2e-81 1
TAIR|locus:2120247 - symbol:AT4G38930 "AT4G38930" species... 769 2.4e-76 1
DICTYBASE|DDB_G0271122 - symbol:ufd1 "ubiquitin fusion de... 608 6.9e-63 2
MGI|MGI:109353 - symbol:Ufd1l "ubiquitin fusion degradati... 570 8.8e-59 2
RGD|619822 - symbol:Ufd1l "ubiquitin fusion degradation 1... 570 8.8e-59 2
UNIPROTKB|F1NVD8 - symbol:UFD1L "Uncharacterized protein"... 566 1.4e-58 2
ZFIN|ZDB-GENE-040718-150 - symbol:ufd1l "ubiquitin fusion... 565 9.9e-58 2
UNIPROTKB|Q92890 - symbol:UFD1L "Ubiquitin fusion degrada... 563 9.9e-58 2
UNIPROTKB|J9NYF2 - symbol:UFD1L "Uncharacterized protein"... 563 3.3e-57 2
UNIPROTKB|F1RK61 - symbol:UFD1L "Uncharacterized protein"... 563 4.2e-57 2
UNIPROTKB|Q0P568 - symbol:UFD1L "Ubiquitin fusion degrada... 566 7.8e-55 1
UNIPROTKB|F1PAI5 - symbol:UFD1L "Uncharacterized protein"... 542 2.7e-52 1
GENEDB_PFALCIPARUM|PF14_0178 - symbol:PF14_0178 "hypothet... 521 4.6e-50 1
UNIPROTKB|Q8ILR6 - symbol:UFD1 "Ubiquitin fusion degradat... 521 4.6e-50 1
UNIPROTKB|A6NJ11 - symbol:UFD1L "Ubiquitin fusion degrada... 489 6.0e-50 2
FB|FBgn0036136 - symbol:Ufd1-like "Ubiquitin fusion-degra... 517 1.2e-49 1
CGD|CAL0002326 - symbol:orf19.5833 species:5476 "Candida ... 470 2.0e-49 2
POMBASE|SPBC16A3.09c - symbol:ufd1 "Cdc48-Ufd1-Npl4 compl... 488 1.4e-46 1
UNIPROTKB|C9IZG3 - symbol:UFD1L "Ubiquitin fusion degrada... 487 1.8e-46 1
SGD|S000003280 - symbol:UFD1 "Substrate-recruiting cofact... 474 4.4e-45 1
UNIPROTKB|G4NAF1 - symbol:MGG_03175 "Ubiquitin fusion deg... 448 1.4e-44 2
WB|WBGene00006733 - symbol:ufd-1 species:6239 "Caenorhabd... 380 4.0e-35 1
UNIPROTKB|C9J6N9 - symbol:UFD1L "Ubiquitin fusion degrada... 375 1.3e-34 1
UNIPROTKB|C9JNP9 - symbol:UFD1L "Ubiquitin fusion degrada... 320 3.4e-32 2
TAIR|locus:2130120 - symbol:AT4G15420 species:3702 "Arabi... 286 1.9e-24 1
UNIPROTKB|C9J7C8 - symbol:UFD1L "Ubiquitin fusion degrada... 223 1.7e-18 1
ASPGD|ASPL0000066677 - symbol:AN10877 species:162425 "Eme... 193 7.4e-14 2
>TAIR|locus:2066122 [details] [associations]
symbol:AT2G29070 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] InterPro:IPR004854
Pfam:PF03152 EMBL:CP002685 GO:GO:0006511 HOGENOM:HOG000212737
KO:K14016 OMA:IDKAHLE PANTHER:PTHR12555 EMBL:BT011682 EMBL:BT012260
IPI:IPI00519577 RefSeq:NP_973557.1 UniGene:At.43163
ProteinModelPortal:Q6NLS0 SMR:Q6NLS0 EnsemblPlants:AT2G29070.2
GeneID:817455 KEGG:ath:AT2G29070 TAIR:At2g29070 InParanoid:Q6NLS0
PhylomeDB:Q6NLS0 ProtClustDB:CLSN2918124 Genevestigator:Q6NLS0
Uniprot:Q6NLS0
Length = 312
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 152/208 (73%), Positives = 179/208 (86%)
Query: 8 AAFERKYRCYPISFIDKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYC 67
++FE+ YRCYP++FIDK HLE GDKI+MPPSALDRLA LHIEYPMLF+LSN S + ++C
Sbjct: 6 SSFEQCYRCYPVTFIDKAHLEKGDKIIMPPSALDRLASLHIEYPMLFQLSNVSVEKTSHC 65
Query: 68 GVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKA 127
GV+EF ADEGL+YLPYWMM+NM L+EGD+++VKN SL KG+Y+KLQPHT+DFLDISNPKA
Sbjct: 66 GVLEFTADEGLVYLPYWMMQNMSLEEGDVMQVKNISLVKGTYIKLQPHTQDFLDISNPKA 125
Query: 128 VLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKEP 187
+LETTLRSYSCLTTGDTIMVPYNNK+YYINVVE KPS+AVSIIETDCEVDF PPLD+KEP
Sbjct: 126 ILETTLRSYSCLTTGDTIMVPYNNKQYYINVVEAKPSSAVSIIETDCEVDFAPPLDYKEP 185
Query: 188 EKPXXXXXXNRTLPEVKEEPPLDFKGPE 215
EKP N+ +VKEE K P+
Sbjct: 186 EKPQKLTPSNKRPLQVKEEEEPASKVPK 213
Score = 173 (66.0 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 51/157 (32%), Positives = 67/157 (42%)
Query: 189 KPXXXXXXNRTLPEVKEEPPLDFKGPEKPSSSSLSNRTXXXXXXXX--XXXIAKFSPFTG 246
KP T EV PPLD+K PEKP + SN+ + KF+PFTG
Sbjct: 160 KPSSAVSIIETDCEVDFAPPLDYKEPEKPQKLTPSNKRPLQVKEEEEPASKVPKFTPFTG 219
Query: 247 SGRCLNGKXXXXXXXXXXXXLIDNPQQXXXXXXXXXXXXXXXXXXXXXXLVFGSNANQSS 306
SG+ L+GK + P + LVFGSN+ ++
Sbjct: 220 SGKRLDGKAQTQTEPEDTKQQ-EKPTENGKDDEKLSVTTPRQISGK---LVFGSNSKSAA 275
Query: 307 NGTPKVL-PKSSSGEPPQVEEKPKFQAFTGKKYSLRG 342
T KV PK+ E ++ KF+ FTGKKYSL G
Sbjct: 276 KETAKVDDPKNIVQESSTKSDEAKFKVFTGKKYSLNG 312
>TAIR|locus:2050054 [details] [associations]
symbol:UFD1 "AT2G21270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005829
EMBL:CP002685 EMBL:AC006841 GO:GO:0006511 eggNOG:COG5140
HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555 EMBL:AK317375
IPI:IPI00846355 RefSeq:NP_001077933.1 UniGene:At.39582
ProteinModelPortal:A8MQW3 SMR:A8MQW3 PaxDb:A8MQW3 PRIDE:A8MQW3
EnsemblPlants:AT2G21270.3 GeneID:816666 KEGG:ath:AT2G21270
TAIR:At2g21270 OMA:AERTSHC PhylomeDB:A8MQW3 ProtClustDB:CLSN2688302
Genevestigator:A8MQW3 Uniprot:A8MQW3
Length = 340
Score = 813 (291.2 bits), Expect = 5.2e-81, P = 5.2e-81
Identities = 150/224 (66%), Positives = 178/224 (79%)
Query: 4 NHHDAAFERKYRCYPISFIDKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGR 63
++H FE+ YRCYP SFIDKP LE+GDKI+MPPSALDRLA LHI+YPMLFEL N R
Sbjct: 28 HYHGTTFEQSYRCYPASFIDKPQLESGDKIIMPPSALDRLASLHIDYPMLFELRNAGIER 87
Query: 64 VTYCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDIS 123
VT+CGV+EFIA+EG+IY+PYWMM+N+LLQEGDIV V+N +L KG+YVKLQPHT DFLDIS
Sbjct: 88 VTHCGVLEFIAEEGMIYMPYWMMQNLLLQEGDIVRVRNVTLPKGTYVKLQPHTTDFLDIS 147
Query: 124 NPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLD 183
NPKA+LET LR+YSCLT+GD+IMVPYNNKKY+I++VETKP+ A+SIIETDCEVDF PPLD
Sbjct: 148 NPKAILETALRNYSCLTSGDSIMVPYNNKKYFIDIVETKPANAISIIETDCEVDFAPPLD 207
Query: 184 FKEPEKPXXXXXXN--RTLPEVKEEPPLDFKGPEKPSSSSLSNR 225
+KEPE+P EV +EP F P S L R
Sbjct: 208 YKEPERPTAPSAAKGPAKAEEVVDEPEPKFN-PFTGSGRRLDGR 250
Score = 196 (74.1 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 53/163 (32%), Positives = 71/163 (43%)
Query: 182 LDFKEPEKPXXXXXXNRTLPEVKEEPPLDFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKF 241
+D E KP T EV PPLD+K PE+P++ S + KF
Sbjct: 180 IDIVET-KPANAISIIETDCEVDFAPPLDYKEPERPTAPSAAKGPAKAEEVVDEPE-PKF 237
Query: 242 SPFTGSGRCLNGKXXXXXXXXXXXXLIDNPQQXXXXXXXXXXXXXXXXXXXXXXLVFGSN 301
+PFTGSGR L+G+ P LVFG+N
Sbjct: 238 NPFTGSGRRLDGRPLAYEPAPASSSKGKQPVVANGNGQSSVASSSEKATRAQGKLVFGAN 297
Query: 302 ANQS-SNGTPKV-LPKSSSGEPPQVEEKPKFQAFTGKKYSLRG 342
N++ PKV K + E + +++PKFQAF+GKKYSLRG
Sbjct: 298 GNRAPKEAAPKVGAAKETKKEEQEKKDEPKFQAFSGKKYSLRG 340
>TAIR|locus:2120247 [details] [associations]
symbol:AT4G38930 "AT4G38930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA;ISS] InterPro:IPR004854
Pfam:PF03152 EMBL:CP002687 GO:GO:0006511 EMBL:AL035679
EMBL:AL161594 HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555
OMA:NQTNEAS IPI:IPI00528563 PIR:T06053 RefSeq:NP_974709.1
UniGene:At.2837 UniGene:At.67000 ProteinModelPortal:Q9SVK0
SMR:Q9SVK0 PRIDE:Q9SVK0 DNASU:830048 EnsemblPlants:AT4G38930.2
GeneID:830048 KEGG:ath:AT4G38930 TAIR:At4g38930 InParanoid:Q9SVK0
PhylomeDB:Q9SVK0 ProtClustDB:CLSN2917686 ArrayExpress:Q9SVK0
Genevestigator:Q9SVK0 Uniprot:Q9SVK0
Length = 315
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 134/186 (72%), Positives = 162/186 (87%)
Query: 5 HHDAAFERKYRCYPISFIDKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRV 64
+H FE+ YRCYP SFIDKP +E+GDKI+MPPSALDRLA L I+YPMLFEL N S
Sbjct: 8 YHGTTFEQTYRCYPSSFIDKPQIESGDKIIMPPSALDRLASLQIDYPMLFELRNASTDSF 67
Query: 65 TYCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISN 124
++CGV+EFIA+EG+IY+PYWMM+N+LLQEGD+V V+N +L KG+YVKLQPHT DFLDI+N
Sbjct: 68 SHCGVLEFIAEEGVIYIPYWMMQNLLLQEGDMVRVRNVTLPKGTYVKLQPHTTDFLDIAN 127
Query: 125 PKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDF 184
PKA+LET LR+YSCLT GD+IMVPYNNKKY+I++VE KPS +SIIETDCEVDF PPLD+
Sbjct: 128 PKAILETALRNYSCLTVGDSIMVPYNNKKYFIDIVEAKPSNGISIIETDCEVDFAPPLDY 187
Query: 185 KEPEKP 190
KEPE+P
Sbjct: 188 KEPERP 193
Score = 183 (69.5 bits), Expect = 2.5e-12, P = 2.5e-12
Identities = 51/161 (31%), Positives = 69/161 (42%)
Query: 182 LDFKEPEKPXXXXXXNRTLPEVKEEPPLDFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKF 241
+D E KP T EV PPLD+K PE+P + + + KF
Sbjct: 159 IDIVEA-KPSNGISIIETDCEVDFAPPLDYKEPERPVAPAPAKGEAKAKEVDVAEAEPKF 217
Query: 242 SPFTGSGRCLNGKXXXXXXXXXXXXLIDNPQQXXXXXXXXXXXXXXXXXXXXXXLVFGSN 301
+PFTGSGR L+G+ ++ Q LVFGSN
Sbjct: 218 NPFTGSGRRLDGRPLSYEPQPGAA---NSNGQSHPVASSSSSGSEKATQQNRGKLVFGSN 274
Query: 302 ANQSSNGTPKVLPKSSSGEPPQVEEKPKFQAFTGKKYSLRG 342
+S+ T KV + + E++ KFQAF+GKKYSLRG
Sbjct: 275 VERSTKETTKVGAGKDRKQEEEAEKEAKFQAFSGKKYSLRG 315
>DICTYBASE|DDB_G0271122 [details] [associations]
symbol:ufd1 "ubiquitin fusion degradation protein
UFD1 family protein" species:44689 "Dictyostelium discoideum"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA;ISS] [GO:0005789 "endoplasmic reticulum membrane"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR004854 Pfam:PF03152 UniPathway:UPA00144
dictyBase:DDB_G0271122 GO:GO:0043161 GenomeReviews:CM000151_GR
EMBL:AAFI02000006 GO:GO:0006511 eggNOG:COG5140 KO:K14016
PANTHER:PTHR12555 RefSeq:XP_645814.1 HSSP:P53044
ProteinModelPortal:Q55BK0 SMR:Q55BK0 STRING:Q55BK0
EnsemblProtists:DDB0238023 GeneID:8617805 KEGG:ddi:DDB_G0271122
OMA:NQTNEAS Uniprot:Q55BK0
Length = 330
Score = 608 (219.1 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 121/258 (46%), Positives = 170/258 (65%)
Query: 4 NHHDAA--FERKYRCYPISFIDKP-H-LENGDKIVMPPSALDRLAYLHIEYPMLFELSNT 59
+HH +E+K++ +PISF+ K H LE+G KI++PPSAL+ L+ L+I+YPMLFE+SN
Sbjct: 17 HHHGGPGRYEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNP 76
Query: 60 SAGRVTYCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDF 119
+G+ ++CGV+EFIA+EG+ YLP WMM+N+ L+EG+ +++KNA+LAKG++VK+QP T +F
Sbjct: 77 ISGKKSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNF 136
Query: 120 LDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFI 179
+DISNPKAVLE +LR ++ LT D IM+ YNN KYY+ VVE KP+ A+SIIE D VDF
Sbjct: 137 IDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFA 196
Query: 180 PPLDFKEPEKPXXXXXXNRTLPEVKEEPPLDFKGPEKPSSSSL---SNRTXXXXXXXXXX 236
PP+D KE P + K L F GP S+ + +
Sbjct: 197 PPMDSKEATSPSTSSPGSHVSGPSKG---LTF-GPASTSAKPIPGGKKKKDESDSDSDSD 252
Query: 237 XIAKFSPFTGSGRCLNGK 254
KF F G+G L+GK
Sbjct: 253 DEPKFKAFAGTGARLDGK 270
Score = 52 (23.4 bits), Expect = 6.9e-63, Sum P(2) = 6.9e-63
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 300 SNANQSSNGTPKVLPKSSSGEPPQVEEKPKFQAFTGKKYSLR 341
+N N ++N ++S E KF++F+GK +SL+
Sbjct: 288 NNNNNNNNNNNNNNNNNNSNNNNTKNEDTKFKSFSGKGHSLK 329
>MGI|MGI:109353 [details] [associations]
symbol:Ufd1l "ubiquitin fusion degradation 1 like"
species:10090 "Mus musculus" [GO:0005102 "receptor binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0032403 "protein complex
binding" evidence=ISO] InterPro:IPR004854 Pfam:PF03152
UniPathway:UPA00144 MGI:MGI:109353 GO:GO:0005829 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 EMBL:CH466521 eggNOG:COG5140
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 CTD:7353 HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW
EMBL:U64445 EMBL:AK147138 EMBL:AK169062 EMBL:BC006630
IPI:IPI00656165 RefSeq:NP_035802.3 UniGene:Mm.237594
ProteinModelPortal:P70362 SMR:P70362 STRING:P70362
PhosphoSite:P70362 REPRODUCTION-2DPAGE:P70362 PaxDb:P70362
PRIDE:P70362 Ensembl:ENSMUST00000005394 Ensembl:ENSMUST00000115578
GeneID:22230 KEGG:mmu:22230 InParanoid:Q923C4 OMA:IRNSRPQ
NextBio:302271 Bgee:P70362 CleanEx:MM_UFD1L Genevestigator:P70362
GermOnline:ENSMUSG00000005262 Uniprot:P70362
Length = 307
Score = 570 (205.7 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 103/185 (55%), Positives = 142/185 (76%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+CGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFK 185
KAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +K
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 186 EPEKP 190
EPE+P
Sbjct: 199 EPERP 203
Score = 51 (23.0 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 206 EPPLDFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKFSPFTGSGRCLNGK 254
+ PL +K PE+P S F F+GSG L+GK
Sbjct: 192 DAPLGYKEPERPVQHEESIEGEADHSGYAGE--VGFRAFSGSGNRLDGK 238
>RGD|619822 [details] [associations]
symbol:Ufd1l "ubiquitin fusion degradation 1 like (yeast)"
species:10116 "Rattus norvegicus" [GO:0005102 "receptor binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IPI] [GO:0043161
"proteasomal ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 UniPathway:UPA00144
RGD:619822 GO:GO:0005829 GO:GO:0005634 GO:GO:0043161 EMBL:CH473999
KO:K14016 PANTHER:PTHR12555 HSSP:P53044 CTD:7353 EMBL:AF234601
EMBL:BC161818 IPI:IPI00195248 RefSeq:NP_445870.1 UniGene:Rn.11946
ProteinModelPortal:Q9ES53 SMR:Q9ES53 IntAct:Q9ES53
PhosphoSite:Q9ES53 PRIDE:Q9ES53 GeneID:84478 KEGG:rno:84478
NextBio:616986 Genevestigator:Q9ES53 Uniprot:Q9ES53
Length = 307
Score = 570 (205.7 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 103/185 (55%), Positives = 142/185 (76%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+CGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFK 185
KAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +K
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 186 EPEKP 190
EPE+P
Sbjct: 199 EPERP 203
Score = 51 (23.0 bits), Expect = 8.8e-59, Sum P(2) = 8.8e-59
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 206 EPPLDFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKFSPFTGSGRCLNGK 254
+ PL +K PE+P S F F+GSG L+GK
Sbjct: 192 DAPLGYKEPERPVQHEESIEGEADHSGYAGE--VGFRAFSGSGNRLDGK 238
>UNIPROTKB|F1NVD8 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737 GO:GO:0006511
GeneTree:ENSGT00390000002408 PANTHER:PTHR12555 OMA:IRNSRPQ
EMBL:AADN02034776 IPI:IPI00589702 Ensembl:ENSGALT00000034831
Uniprot:F1NVD8
Length = 307
Score = 566 (204.3 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 103/184 (55%), Positives = 141/184 (76%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+CGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFK 185
KAVLE LRS++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +K
Sbjct: 139 KAVLENALRSFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 186 EPEK 189
EPE+
Sbjct: 199 EPER 202
Score = 53 (23.7 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 206 EPPLDFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKFSPFTGSGRCLNGK 254
+ PL +K PE+ S+ T F F+GSG L+GK
Sbjct: 192 DAPLGYKEPER--SAQHEETTDVEADHSGYVSDVGFRAFSGSGNRLDGK 238
>ZFIN|ZDB-GENE-040718-150 [details] [associations]
symbol:ufd1l "ubiquitin fusion degradation 1-like"
species:7955 "Danio rerio" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0042221 "response to chemical
stimulus" evidence=IDA] InterPro:IPR004854 Pfam:PF03152
ZFIN:ZDB-GENE-040718-150 GO:GO:0042221 GO:GO:0006511 EMBL:BX323451
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 CTD:7353 HOVERGEN:HBG001266 OMA:IRNSRPQ
EMBL:FP085395 EMBL:BC076020 EMBL:BC153586 EMBL:AY648824
IPI:IPI00489675 RefSeq:NP_001002451.1 UniGene:Dr.79033 SMR:Q6DRD5
STRING:Q6DRD5 Ensembl:ENSDART00000034968 GeneID:436724
KEGG:dre:436724 InParanoid:Q6DRD5 NextBio:20831165 Uniprot:Q6DRD5
Length = 308
Score = 565 (203.9 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 103/184 (55%), Positives = 140/184 (76%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRCY +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+T
Sbjct: 19 FSTQYRCYSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+CGV+EF+ADEG YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGFCYLPHWMMQNLLLEEGGLVQVESVNLMVATYSKFQPQSPDFLDITNP 138
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFK 185
KAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +K
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 186 EPEK 189
EPE+
Sbjct: 199 EPER 202
Score = 46 (21.3 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 206 EPPLDFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKFSPFTGSGRCLNGK 254
+ PL +K PE+ + F FTGSG L+GK
Sbjct: 192 DAPLGYKEPERHMQHPEEPAEEETDPSNYDMDLG-FRAFTGSGNRLDGK 239
>UNIPROTKB|Q92890 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0005102 "receptor binding"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0001501 "skeletal system development"
evidence=TAS] [GO:0004843 "ubiquitin-specific protease activity"
evidence=TAS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=TAS] InterPro:IPR004854 Pfam:PF03152
UniPathway:UPA00144 GO:GO:0005829 GO:GO:0005634 GO:GO:0005737
GO:GO:0043161 GO:GO:0001501 GO:GO:0006511 Orphanet:567
GO:GO:0004843 EMBL:AC000087 eggNOG:COG5140 HOGENOM:HOG000212737
KO:K14016 PANTHER:PTHR12555 EMBL:U64444 EMBL:AF141201 EMBL:CR456607
EMBL:AK225877 EMBL:AC000068 EMBL:BC001049 EMBL:BC005087
IPI:IPI00218292 IPI:IPI00655754 IPI:IPI00852988
RefSeq:NP_001030324.2 RefSeq:NP_005650.2 UniGene:Hs.474213 PDB:2YUJ
PDBsum:2YUJ ProteinModelPortal:Q92890 SMR:Q92890 DIP:DIP-45954N
IntAct:Q92890 MINT:MINT-2837704 STRING:Q92890 PhosphoSite:Q92890
DMDM:160332310 OGP:Q92890 PaxDb:Q92890 PRIDE:Q92890 DNASU:7353
Ensembl:ENST00000263202 Ensembl:ENST00000399523 GeneID:7353
KEGG:hsa:7353 UCSC:uc002zpm.2 CTD:7353 GeneCards:GC22M019437
HGNC:HGNC:12520 HPA:HPA030287 MIM:601754 neXtProt:NX_Q92890
PharmGKB:PA37167 HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW ChiTaRS:UFD1L
EvolutionaryTrace:Q92890 GenomeRNAi:7353 NextBio:28788
ArrayExpress:Q92890 Bgee:Q92890 CleanEx:HS_UFD1L
Genevestigator:Q92890 Uniprot:Q92890
Length = 307
Score = 563 (203.2 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 102/184 (55%), Positives = 141/184 (76%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+CGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFK 185
KAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +K
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 186 EPEK 189
EPE+
Sbjct: 199 EPER 202
Score = 48 (22.0 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 206 EPPLDFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKFSPFTGSGRCLNGK 254
+ PL +K PE+ S T F F+GSG L+GK
Sbjct: 192 DAPLGYKEPERQVQHEES--TEGEADHSGYAGELGFRAFSGSGNRLDGK 238
>UNIPROTKB|J9NYF2 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
GO:GO:0006511 GeneTree:ENSGT00390000002408 KO:K14016
PANTHER:PTHR12555 CTD:7353 EMBL:AAEX03014865 EMBL:AAEX03014866
RefSeq:XP_850373.3 Ensembl:ENSCAFT00000047839 GeneID:608300
KEGG:cfa:608300 Uniprot:J9NYF2
Length = 307
Score = 563 (203.2 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 102/184 (55%), Positives = 141/184 (76%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+CGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFK 185
KAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +K
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 186 EPEK 189
EPE+
Sbjct: 199 EPER 202
Score = 43 (20.2 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 206 EPPLDFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKFSPFTGSGRCLNGK 254
+ PL +K PE+ S F F+GSG L+GK
Sbjct: 192 DAPLGYKEPERQVQHEESAEGEADHSGYAGEL--GFRAFSGSGNRLDGK 238
>UNIPROTKB|F1RK61 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737 GO:GO:0006511
GeneTree:ENSGT00390000002408 PANTHER:PTHR12555 OMA:IRNSRPQ
EMBL:CU468637 EMBL:CU618331 Ensembl:ENSSSCT00000011082
Uniprot:F1RK61
Length = 307
Score = 563 (203.2 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 102/184 (55%), Positives = 141/184 (76%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+CGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFK 185
KAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +K
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 186 EPEK 189
EPE+
Sbjct: 199 EPER 202
Score = 42 (19.8 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 14/49 (28%), Positives = 19/49 (38%)
Query: 206 EPPLDFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKFSPFTGSGRCLNGK 254
+ PL +K PE+ S F F+GSG L+GK
Sbjct: 192 DAPLGYKEPERQIQHEESAEGEADHGGYAGEL--GFRAFSGSGNRLDGK 238
>UNIPROTKB|Q0P568 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation 1 like"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 eggNOG:COG5140 GeneTree:ENSGT00390000002408
HOGENOM:HOG000212737 KO:K14016 PANTHER:PTHR12555 CTD:7353
HOVERGEN:HBG001266 OrthoDB:EOG4H9XKW EMBL:DAAA02045760
EMBL:BC120441 IPI:IPI00907531 RefSeq:NP_001068768.1
UniGene:Bt.11225 SMR:Q0P568 STRING:Q0P568
Ensembl:ENSBTAT00000056937 GeneID:507124 KEGG:bta:507124
OMA:AISIIEC NextBio:20867911 Uniprot:Q0P568
Length = 231
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 103/184 (55%), Positives = 141/184 (76%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ RVT
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRVT 78
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+CGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFK 185
KAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +K
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 186 EPEK 189
EPE+
Sbjct: 199 EPER 202
>UNIPROTKB|F1PAI5 [details] [associations]
symbol:UFD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
GO:GO:0006511 GeneTree:ENSGT00390000002408 PANTHER:PTHR12555
OMA:IRNSRPQ EMBL:AAEX03014865 EMBL:AAEX03014866
Ensembl:ENSCAFT00000023194 Uniprot:F1PAI5
Length = 310
Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
Identities = 102/188 (54%), Positives = 142/188 (75%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+T
Sbjct: 18 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 77
Query: 66 YCGVMEFIADEGLIYLPYW-MMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISN 124
+CGV+EF+ADEG+ YLP+W MM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+N
Sbjct: 78 HCGVLEFVADEGICYLPHWWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITN 137
Query: 125 PKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDC---EVDFIPP 181
PKAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D +VDF P
Sbjct: 138 PKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNGPKVDFDAP 197
Query: 182 LDFKEPEK 189
L +KEPE+
Sbjct: 198 LGYKEPER 205
>GENEDB_PFALCIPARUM|PF14_0178 [details] [associations]
symbol:PF14_0178 "hypothetical protein"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004854 Pfam:PF03152
EMBL:AE014187 GO:GO:0006511 GenomeReviews:AE014187_GR KO:K14016
PANTHER:PTHR12555 RefSeq:XP_001348351.2 ProteinModelPortal:Q8ILR6
MINT:MINT-1732927 PRIDE:Q8ILR6 EnsemblProtists:PF14_0178:mRNA
GeneID:811759 KEGG:pfa:PF14_0178 EuPathDB:PlasmoDB:PF3D7_1418000
ProtClustDB:CLSZ2428901 Uniprot:Q8ILR6
Length = 282
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 95/178 (53%), Positives = 134/178 (75%)
Query: 10 FERKYRCYPISFIDKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGV 69
F+ +Y CYP+SFI K +ENG+KI++P +AL+ LA HI +PMLFE+SN + T+ GV
Sbjct: 22 FQEEYTCYPVSFIGKDDMENGNKIILPQTALNALARRHISWPMLFEVSNPYTDKRTHSGV 81
Query: 70 MEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVL 129
+EFI+DEG ++PYWMM+ + L+EGDIV V + SL KG++VKL+P +KDF+++SN +AVL
Sbjct: 82 LEFISDEGTCHMPYWMMQQLNLKEGDIVRVTSVSLPKGTFVKLKPCSKDFMELSNHRAVL 141
Query: 130 ETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKEP 187
ET LR+Y+ LT GD I++ Y K Y I +V+ KP+ A +IIETD EV+F P+D EP
Sbjct: 142 ETALRNYATLTIGDNIVIHYLGKTYEIKIVDLKPAFACTIIETDVEVEFEEPIDHSEP 199
>UNIPROTKB|Q8ILR6 [details] [associations]
symbol:UFD1 "Ubiquitin fusion degradation protein UFD1,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004854 Pfam:PF03152
EMBL:AE014187 GO:GO:0006511 GenomeReviews:AE014187_GR KO:K14016
PANTHER:PTHR12555 RefSeq:XP_001348351.2 ProteinModelPortal:Q8ILR6
MINT:MINT-1732927 PRIDE:Q8ILR6 EnsemblProtists:PF14_0178:mRNA
GeneID:811759 KEGG:pfa:PF14_0178 EuPathDB:PlasmoDB:PF3D7_1418000
ProtClustDB:CLSZ2428901 Uniprot:Q8ILR6
Length = 282
Score = 521 (188.5 bits), Expect = 4.6e-50, P = 4.6e-50
Identities = 95/178 (53%), Positives = 134/178 (75%)
Query: 10 FERKYRCYPISFIDKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGV 69
F+ +Y CYP+SFI K +ENG+KI++P +AL+ LA HI +PMLFE+SN + T+ GV
Sbjct: 22 FQEEYTCYPVSFIGKDDMENGNKIILPQTALNALARRHISWPMLFEVSNPYTDKRTHSGV 81
Query: 70 MEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVL 129
+EFI+DEG ++PYWMM+ + L+EGDIV V + SL KG++VKL+P +KDF+++SN +AVL
Sbjct: 82 LEFISDEGTCHMPYWMMQQLNLKEGDIVRVTSVSLPKGTFVKLKPCSKDFMELSNHRAVL 141
Query: 130 ETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKEP 187
ET LR+Y+ LT GD I++ Y K Y I +V+ KP+ A +IIETD EV+F P+D EP
Sbjct: 142 ETALRNYATLTIGDNIVIHYLGKTYEIKIVDLKPAFACTIIETDVEVEFEEPIDHSEP 199
>UNIPROTKB|A6NJ11 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 HOVERGEN:HBG001266 ChiTaRS:UFD1L IPI:IPI00654779
ProteinModelPortal:A6NJ11 SMR:A6NJ11 STRING:A6NJ11 PRIDE:A6NJ11
Ensembl:ENST00000360834 ArrayExpress:A6NJ11 Bgee:A6NJ11
Uniprot:A6NJ11
Length = 296
Score = 489 (177.2 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 92/180 (51%), Positives = 129/180 (71%)
Query: 10 FERKYRCYPISFIDKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGV 69
F +YRC+ +S + P+ D+ + RL +I YPMLF+L+N ++ R+T+CGV
Sbjct: 19 FSTQYRCFSVSMLAGPN----DRSDVEKGGKSRL---NITYPMLFKLTNKNSDRMTHCGV 71
Query: 70 MEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVL 129
+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NPKAVL
Sbjct: 72 LEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVL 131
Query: 130 ETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKEPEK 189
E LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +KEPE+
Sbjct: 132 ENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPER 191
Score = 48 (22.0 bits), Expect = 6.0e-50, Sum P(2) = 6.0e-50
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 206 EPPLDFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKFSPFTGSGRCLNGK 254
+ PL +K PE+ S T F F+GSG L+GK
Sbjct: 181 DAPLGYKEPERQVQHEES--TEGEADHSGYAGELGFRAFSGSGNRLDGK 227
>FB|FBgn0036136 [details] [associations]
symbol:Ufd1-like "Ubiquitin fusion-degradation 1-like"
species:7227 "Drosophila melanogaster" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IMP;NAS]
[GO:0006508 "proteolysis" evidence=IMP] [GO:0032436 "positive
regulation of proteasomal ubiquitin-dependent protein catabolic
process" evidence=IMP] [GO:0000502 "proteasome complex"
evidence=NAS] InterPro:IPR004854 Pfam:PF03152 EMBL:AE014296
GO:GO:0000502 GO:GO:0006511 GO:GO:0032436 eggNOG:COG5140
GeneTree:ENSGT00390000002408 KO:K14016 PANTHER:PTHR12555
EMBL:AF228282 EMBL:AF228283 EMBL:AY060735 RefSeq:NP_524023.1
UniGene:Dm.927 ProteinModelPortal:Q9VTF9 SMR:Q9VTF9 DIP:DIP-21844N
IntAct:Q9VTF9 MINT:MINT-755529 STRING:Q9VTF9 PaxDb:Q9VTF9
PRIDE:Q9VTF9 EnsemblMetazoa:FBtr0076223 GeneID:39254
KEGG:dme:Dmel_CG6233 CTD:39254 FlyBase:FBgn0036136
InParanoid:Q9VTF9 OMA:YKCFSVS OrthoDB:EOG463XTR PhylomeDB:Q9VTF9
GenomeRNAi:39254 NextBio:812728 Bgee:Q9VTF9 GermOnline:CG6233
Uniprot:Q9VTF9
Length = 316
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 94/180 (52%), Positives = 130/180 (72%)
Query: 10 FERKYRCYPISFI---DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTY 66
F Y+C+ +S + ++ +E G KI+MPPSALD L L++EYPMLF+L+N R ++
Sbjct: 17 FHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTNVKKSRSSH 76
Query: 67 CGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPK 126
GV+EF+ADEG YLP+WMMEN+LL EGDI+ +++ SL ++ K QPH+ DFLDI+NPK
Sbjct: 77 AGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPK 136
Query: 127 AVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 186
AVLE LR+++CLT GD I + YN K Y + V+ETKP AVSIIE D V+F P+ +K+
Sbjct: 137 AVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKD 196
>CGD|CAL0002326 [details] [associations]
symbol:orf19.5833 species:5476 "Candida albicans" [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0071629 "cytoplasm-associated proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:1900182 "positive
regulation of protein localization to nucleus" evidence=IEA]
[GO:0030970 "retrograde protein transport, ER to cytosol"
evidence=IEA] [GO:0071712 "ER-associated misfolded protein
catabolic process" evidence=IEA] [GO:0031593 "polyubiquitin
binding" evidence=IEA] InterPro:IPR004854 Pfam:PF03152
CGD:CAL0002326 GO:GO:0006511 EMBL:AACQ01000088 EMBL:AACQ01000087
eggNOG:COG5140 KO:K14016 PANTHER:PTHR12555 RefSeq:XP_715308.1
RefSeq:XP_715373.1 ProteinModelPortal:Q5A0H8 SMR:Q5A0H8
STRING:Q5A0H8 GeneID:3643035 GeneID:3643074 KEGG:cal:CaO19.13255
KEGG:cal:CaO19.5833 Uniprot:Q5A0H8
Length = 363
Score = 470 (170.5 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 108/254 (42%), Positives = 146/254 (57%)
Query: 10 FERKYRCYPISF----IDKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
FE +RCYPI+ I K G KI +PPSAL++L LHI YPMLFE+ N ++T
Sbjct: 24 FEEYFRCYPIAMMPDLIRKDDANYGGKIFLPPSALNKLTMLHIRYPMLFEIKNEQNEKLT 83
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+ GV+EFIA+EG YLP WMM + L G ++++ N L G +VK++P + DFLDIS+P
Sbjct: 84 HSGVLEFIAEEGRTYLPQWMMNTLELTPGSLIKITNCDLNLGKFVKIEPQSVDFLDISDP 143
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKP-STA--VSIIETDCEVDFIPPL 182
KAVLE LR +S LT D I V YN+ Y I V+E KP ST+ + ++ETD E DF P +
Sbjct: 144 KAVLENVLRKFSTLTVNDIIEVNYNDAIYGIRVLEVKPDSTSKGICVVETDLETDFAPLV 203
Query: 183 DFKEPE-KPXXXXXXNRTLPEVKEEPPLDFKGPEKPSSSS-LSNRTXXXXXXXXXXXIAK 240
+ EPE KP P K P+D P K + S+ + K
Sbjct: 204 GYVEPEYKPKTVE------PSSK---PID---PSKVNKSAGAATMAKSINYAKLVAEAGK 251
Query: 241 FSPFTGSGRCLNGK 254
+ F+GSG+ L+GK
Sbjct: 252 TTKFSGSGQKLSGK 265
Score = 62 (26.9 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 17/39 (43%), Positives = 19/39 (48%)
Query: 303 NQSSNGTPKVLPKSSSGEPPQVEEKPKFQAFTGKKYSLR 341
NQ G P VLP + EE K QAF+G SLR
Sbjct: 297 NQLFFGFPVVLPTQEEIDEESKEELKKQQAFSGSGQSLR 335
>POMBASE|SPBC16A3.09c [details] [associations]
symbol:ufd1 "Cdc48-Ufd1-Npl4 complex subunit Ufd1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005783 "endoplasmic reticulum" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0030433 "ER-associated protein catabolic process" evidence=ISS]
[GO:0033554 "cellular response to stress" evidence=IEP] [GO:0034098
"Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=ISO]
InterPro:IPR004854 Pfam:PF03152 PomBase:SPBC16A3.09c GO:GO:0005829
GO:GO:0005634 GO:GO:0033554 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0030433 GO:GO:0034098 eggNOG:COG5140 HOGENOM:HOG000212737
KO:K14016 PANTHER:PTHR12555 EMBL:AJ005825 EMBL:AJ005824
EMBL:AF034137 PIR:T43554 PIR:T43667 RefSeq:NP_596780.1
ProteinModelPortal:O42915 SMR:O42915 STRING:O42915
EnsemblFungi:SPBC16A3.09c.1 GeneID:2539623 KEGG:spo:SPBC16A3.09c
OMA:ARRNITW OrthoDB:EOG4BP4N3 NextBio:20800779 Uniprot:O42915
Length = 342
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 88/192 (45%), Positives = 138/192 (71%)
Query: 1 AYENHHDAAFERKYRCYPISFI---DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELS 57
A+ N+ + F+ +YRCYP++ I ++P++ G K+++PPSAL++L+ L++ YPMLF+
Sbjct: 23 AFHNNVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFE 82
Query: 58 NTSAGRVTYCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTK 117
N +A + T+ GV+EFIA+EG +YLPYWMM + L+ GD+V V N +A+GSYVKLQP +
Sbjct: 83 NEAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSV 142
Query: 118 DFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTA---VSIIETDC 174
+FLDI++ +AVLE LR++S LT D + YN++ Y I V++ +P + VS++ETD
Sbjct: 143 NFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDL 202
Query: 175 EVDFIPPLDFKE 186
VDF PP+ ++E
Sbjct: 203 VVDFDPPIGYEE 214
>UNIPROTKB|C9IZG3 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI00654779
ProteinModelPortal:C9IZG3 SMR:C9IZG3 STRING:C9IZG3
Ensembl:ENST00000421968 UCSC:uc010grq.2 ArrayExpress:C9IZG3
Bgee:C9IZG3 Uniprot:C9IZG3
Length = 190
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 92/179 (51%), Positives = 128/179 (71%)
Query: 10 FERKYRCYPISFIDKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGV 69
F +YRC+ +S + P+ D+ + RL +I YPMLF+L+N ++ R+T+CGV
Sbjct: 19 FSTQYRCFSVSMLAGPN----DRSDVEKGGKSRL---NITYPMLFKLTNKNSDRMTHCGV 71
Query: 70 MEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVL 129
+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NPKAVL
Sbjct: 72 LEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVL 131
Query: 130 ETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKEPE 188
E LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +KEPE
Sbjct: 132 ENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPE 190
>SGD|S000003280 [details] [associations]
symbol:UFD1 "Substrate-recruiting cofactor of the
Cdc48p-Npl4p-Ufd1p segregase" species:4932 "Saccharomyces
cerevisiae" [GO:0071712 "ER-associated misfolded protein catabolic
process" evidence=IMP] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0030433 "ER-associated protein
catabolic process" evidence=IMP] [GO:0030970 "retrograde protein
transport, ER to cytosol" evidence=IMP] [GO:1900182 "positive
regulation of protein localization to nucleus" evidence=IMP]
[GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA ATPase complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0043130 "ubiquitin binding" evidence=IDA] [GO:0031593
"polyubiquitin binding" evidence=IDA] [GO:0071629
"cytoplasm-associated proteasomal ubiquitin-dependent protein
catabolic process" evidence=IMP] InterPro:IPR004854 Pfam:PF03152
SGD:S000003280 GO:GO:0005634 EMBL:BK006941 GO:GO:0031593
GO:GO:0034098 GO:GO:0030970 GO:GO:0071629 GO:GO:0071712
GO:GO:1900182 EMBL:DQ115391 EMBL:Z72833 eggNOG:COG5140
GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737 KO:K14016
PANTHER:PTHR12555 OrthoDB:EOG4BP4N3 EMBL:U22153 EMBL:U17264
EMBL:AY692806 PIR:S59814 RefSeq:NP_011562.1 PDB:1ZC1 PDBsum:1ZC1
ProteinModelPortal:P53044 SMR:P53044 DIP:DIP-1476N IntAct:P53044
MINT:MINT-393265 STRING:P53044 PaxDb:P53044 PeptideAtlas:P53044
EnsemblFungi:YGR048W GeneID:852939 KEGG:sce:YGR048W CYGD:YGR048w
OMA:RCYPIAM EvolutionaryTrace:P53044 NextBio:972678
Genevestigator:P53044 GermOnline:YGR048W Uniprot:P53044
Length = 361
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 102/253 (40%), Positives = 145/253 (57%)
Query: 10 FERKYRCYPISFID----KPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
FE +RCYPI+ ++ K G KI +PPSAL +L+ L+I YPMLF+L+ GRVT
Sbjct: 21 FEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVT 80
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+ GV+EFIA+EG +YLP WMME + +Q G ++++ + + G +VKL+P + DFLDIS+P
Sbjct: 81 HGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDP 140
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKP---STAVSIIETDCEVDFIPPL 182
KAVLE LR++S LT D I + YN K + I ++E KP S ++ +IETD DF PP+
Sbjct: 141 KAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPPV 200
Query: 183 DFKEPE-KPXXXXXXNRTLPEVKEEPPLDFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKF 241
+ EP+ K + LD P S+S R K
Sbjct: 201 GYVEPDYKALKAQQDKEKKNSFGKGQVLD---PSVLGQGSMSTRIDYAGIANSSRN--KL 255
Query: 242 SPFTGSGRCLNGK 254
S F G G+ ++GK
Sbjct: 256 SKFVGQGQNISGK 268
>UNIPROTKB|G4NAF1 [details] [associations]
symbol:MGG_03175 "Ubiquitin fusion degradation protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511
EMBL:CM001234 KO:K14016 PANTHER:PTHR12555 RefSeq:XP_003716815.1
ProteinModelPortal:G4NAF1 SMR:G4NAF1 EnsemblFungi:MGG_03175T0
GeneID:2677027 KEGG:mgr:MGG_03175 Uniprot:G4NAF1
Length = 379
Score = 448 (162.8 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 83/186 (44%), Positives = 125/186 (67%)
Query: 10 FERKYRCYPISFI---DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTY 66
F+ YRCYP+ + ++P L +G KI++PPSAL++++ LH+++P+L EL N + T+
Sbjct: 17 FDEYYRCYPMIMVPGAERPELNHGSKIILPPSALEKVSKLHVQWPLLMELINGENDKHTH 76
Query: 67 CGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPK 126
GV+EF+A+EG YLP WMM+ + L GD++++K+ SL VKLQP + FLDIS+P+
Sbjct: 77 SGVLEFVAEEGRAYLPQWMMQTLQLDVGDMIQIKSTSLELARMVKLQPQSAKFLDISDPR 136
Query: 127 AVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTA---VSIIETDCEVDFIPPLD 183
AVLE R+++ LT GD YN+ Y + V++ KP T VS+IETD VDF P+
Sbjct: 137 AVLEKAFRNFATLTKGDVFSFEYNDDVYEMAVLDVKPETTKMGVSMIETDVSVDFAAPVG 196
Query: 184 FKEPEK 189
+ EPE+
Sbjct: 197 YVEPER 202
Score = 38 (18.4 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 311 KVLPKSSSGEPPQVEEKPKFQAFTGKKYSLRG 342
++ P + + + +E K F G+ +LRG
Sbjct: 318 EIKPVKTDAQKEEEKESAKRPHFAGQGQTLRG 349
>WB|WBGene00006733 [details] [associations]
symbol:ufd-1 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0008340 "determination of
adult lifespan" evidence=IMP] [GO:0034098 "Cdc48p-Npl4p-Ufd1p AAA
ATPase complex" evidence=IPI] [GO:0071712 "ER-associated misfolded
protein catabolic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0034098 GO:GO:0071712 EMBL:Z69635
PIR:T21108 RefSeq:NP_502348.1 ProteinModelPortal:Q19584 SMR:Q19584
DIP:DIP-26847N IntAct:Q19584 MINT:MINT-1079679 STRING:Q19584
PaxDb:Q19584 PRIDE:Q19584 EnsemblMetazoa:F19B6.2a GeneID:3565860
KEGG:cel:CELE_F19B6.2 UCSC:F19B6.2b CTD:3565860 WormBase:F19B6.2a
eggNOG:COG5140 GeneTree:ENSGT00390000002408 HOGENOM:HOG000212737
InParanoid:Q19584 KO:K14016 OMA:IDKAHLE NextBio:958135
ArrayExpress:Q19584 PANTHER:PTHR12555 Uniprot:Q19584
Length = 342
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 89/225 (39%), Positives = 127/225 (56%)
Query: 30 GDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGVMEFIADEGLIYLPYWMMENM 89
G KI++P SAL+ L +I PMLF+L+N + RVT+CGV+EF A EG LP WMM+ +
Sbjct: 47 GGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQL 106
Query: 90 LLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPY 149
L +GD + +++A+L K ++ KL+P + +FL+I+NPKAVLE LR Y+CLT D I Y
Sbjct: 107 GLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSY 166
Query: 150 NNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKEPEKPXXXXXXNRTLPEVKEEPPL 209
+ VV+ KP+ +V IIE D +DF PP + E +P + P V +PP
Sbjct: 167 AGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYVE--QP------RQVTPAVTAKPPA 218
Query: 210 DFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKFSPFTGSGRCLNGK 254
P +S+ A S F G+GR L+GK
Sbjct: 219 -------PDASAFIGAGQKAGGSGGTGQNAT-SVFGGAGRRLDGK 255
>UNIPROTKB|C9J6N9 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 EMBL:AC000087 HOGENOM:HOG000212737 PANTHER:PTHR12555
EMBL:AC000068 HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI01010945
ProteinModelPortal:C9J6N9 SMR:C9J6N9 STRING:C9J6N9
Ensembl:ENST00000494054 ArrayExpress:C9J6N9 Bgee:C9J6N9
Uniprot:C9J6N9
Length = 136
Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
Identities = 66/123 (53%), Positives = 97/123 (78%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+T
Sbjct: 14 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 73
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+CGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NP
Sbjct: 74 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 133
Query: 126 KAV 128
KAV
Sbjct: 134 KAV 136
>UNIPROTKB|C9JNP9 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004854 Pfam:PF03152 GO:GO:0006511 EMBL:AC000087
HOGENOM:HOG000212737 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI01011883
ProteinModelPortal:C9JNP9 SMR:C9JNP9 STRING:C9JNP9
Ensembl:ENST00000447868 ArrayExpress:C9JNP9 Bgee:C9JNP9
Uniprot:C9JNP9
Length = 159
Score = 320 (117.7 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 60/105 (57%), Positives = 79/105 (75%)
Query: 85 MMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDT 144
MM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NPKAVLE LR+++CLTTGD
Sbjct: 2 MMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDV 61
Query: 145 IMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKEPEK 189
I + YN K Y + V+ETKP AVSIIE D VDF PL +KEPE+
Sbjct: 62 IAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPER 106
Score = 48 (22.0 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 206 EPPLDFKGPEKPSSSSLSNRTXXXXXXXXXXXIAKFSPFTGSGRCLNGK 254
+ PL +K PE+ S T F F+GSG L+GK
Sbjct: 96 DAPLGYKEPERQVQHEES--TEGEADHSGYAGELGFRAFSGSGNRLDGK 142
>TAIR|locus:2130120 [details] [associations]
symbol:AT4G15420 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR004854 InterPro:IPR015880 Pfam:PF03152 SMART:SM00355
EMBL:CP002687 GO:GO:0008270 GO:GO:0005622 GO:GO:0006511
InterPro:IPR007280 Pfam:PF04151 PANTHER:PTHR12555 EMBL:AF446353
EMBL:AY086035 EMBL:AY143927 EMBL:DQ778953 IPI:IPI00544100
RefSeq:NP_567465.1 UniGene:At.4344 UniGene:At.71880
ProteinModelPortal:Q8W1E7 SMR:Q8W1E7 STRING:Q8W1E7 PRIDE:Q8W1E7
EnsemblPlants:AT4G15420.1 GeneID:827213 KEGG:ath:AT4G15420
InParanoid:Q8W1E7 OMA:FHEPLQC ProtClustDB:PLN03086
Genevestigator:Q8W1E7 Uniprot:Q8W1E7
Length = 561
Score = 286 (105.7 bits), Expect = 1.9e-24, P = 1.9e-24
Identities = 64/162 (39%), Positives = 95/162 (58%)
Query: 29 NGDKIVMPPSALDRLAYLHI--EYPMLFELS---NTSAGRVTYCGVMEFIADEGLIYLPY 83
NGDKI +PPS L+ + P+ FELS + + T+ GV+EF A++G I LP
Sbjct: 90 NGDKIKLPPSCFTELSDQGAFDKGPLYFELSVVDHADNKKTTHSGVLEFTAEDGTIGLPP 149
Query: 84 WMMENMLLQEG--DI--VEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCL 139
+ N+ D+ VE++ L KGSY KLQP F D+ N KA+LET LR ++ L
Sbjct: 150 HVWSNLFSTHDPMDVPLVEIRYIRLPKGSYAKLQPDNLGFSDLPNHKAILETILRQHATL 209
Query: 140 TTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPP 181
+ D ++V Y Y + V+E +P+T++S++ETD EVD + P
Sbjct: 210 SLDDVLLVNYGQVSYKLQVLELRPATSISVLETDIEVDIVSP 251
>UNIPROTKB|C9J7C8 [details] [associations]
symbol:UFD1L "Ubiquitin fusion degradation protein 1
homolog" species:9606 "Homo sapiens" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005102 "receptor binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] InterPro:IPR004854 Pfam:PF03152 GO:GO:0005737
GO:GO:0006511 EMBL:AC000087 PANTHER:PTHR12555 EMBL:AC000068
HGNC:HGNC:12520 ChiTaRS:UFD1L IPI:IPI00945833
ProteinModelPortal:C9J7C8 SMR:C9J7C8 STRING:C9J7C8
Ensembl:ENST00000474226 ArrayExpress:C9J7C8 Bgee:C9J7C8
Uniprot:C9J7C8
Length = 69
Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
Identities = 37/69 (53%), Positives = 57/69 (82%)
Query: 52 MLFELSNTSAGRVTYCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVK 111
MLF+L+N ++ R+T+CGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K
Sbjct: 1 MLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSK 60
Query: 112 LQPHTKDFL 120
QP + DFL
Sbjct: 61 FQPQSPDFL 69
>ASPGD|ASPL0000066677 [details] [associations]
symbol:AN10877 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR004854
Pfam:PF03152 EMBL:BN001304 GO:GO:0006511 PANTHER:PTHR12555
EnsemblFungi:CADANIAT00000493 OMA:GIREFSA Uniprot:C8VCB5
Length = 756
Score = 193 (73.0 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 53/142 (37%), Positives = 79/142 (55%)
Query: 48 IEYPMLFELSNTSAGRVTYCGVMEFIADEGLIYLPYWMMENM-LLQEGD-----IVEVKN 101
+ +P+ F L NT RV Y G+ EF A E I L + E + + QEG IV V
Sbjct: 87 LPHPLTFRLVNTQNSRVIYAGIREFSARENEIGLSASLREALDISQEGGDADAPIVTVHA 146
Query: 102 ASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRS-YSCLTTGDTIMVPYNNK---KYYIN 157
L KG+YV+L+P + D + KA+LE LRS Y+ LTTG+T+ VP + K+ ++
Sbjct: 147 EQLPKGTYVRLRPLEAGY-DTDDWKALLERHLRSNYTTLTTGETLTVPRGQEESFKFLVD 205
Query: 158 VVETKPSTAVSIIETDCEVDFI 179
VE + + +++TD EVD +
Sbjct: 206 KVEPQ-GEGICVVDTDLEVDIV 226
Score = 49 (22.3 bits), Expect = 7.4e-14, Sum P(2) = 7.4e-14
Identities = 8/15 (53%), Positives = 14/15 (93%)
Query: 29 NGDKIVMPPSALDRL 43
+GD+I++P SAL++L
Sbjct: 26 SGDRIILPQSALEQL 40
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.134 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 342 291 0.00089 115 3 11 23 0.44 34
33 0.43 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 28
No. of states in DFA: 594 (63 KB)
Total size of DFA: 203 KB (2114 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.06u 0.10s 23.16t Elapsed: 00:00:01
Total cpu time: 23.07u 0.10s 23.17t Elapsed: 00:00:01
Start: Fri May 10 23:19:53 2013 End: Fri May 10 23:19:54 2013