BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047222
(342 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55BK0|UFD1_DICDI Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium
discoideum GN=ufd1 PE=3 SV=1
Length = 330
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 105/187 (56%), Positives = 148/187 (79%), Gaps = 5/187 (2%)
Query: 5 HHDAA---FERKYRCYPISFI--DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNT 59
HH +E+K++ +PISF+ +K LE+G KI++PPSAL+ L+ L+I+YPMLFE+SN
Sbjct: 17 HHHGGPGRYEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNP 76
Query: 60 SAGRVTYCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDF 119
+G+ ++CGV+EFIA+EG+ YLP WMM+N+ L+EG+ +++KNA+LAKG++VK+QP T +F
Sbjct: 77 ISGKKSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNF 136
Query: 120 LDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFI 179
+DISNPKAVLE +LR ++ LT D IM+ YNN KYY+ VVE KP+ A+SIIE D VDF
Sbjct: 137 IDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFA 196
Query: 180 PPLDFKE 186
PP+D KE
Sbjct: 197 PPMDSKE 203
>sp|Q9ES53|UFD1_RAT Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus
GN=Ufd1l PE=1 SV=1
Length = 307
Score = 232 bits (592), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 166/262 (63%), Gaps = 34/262 (12%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+CGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFK 185
KAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +K
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 186 EPEKPSSSSLSNRTLPEVKEEPPLDFKGPEKPSSSSLSNRTPPEVKEEPPKKIAKFSPFT 245
EPE+P V+ E ++ + + + F F+
Sbjct: 199 EPERP------------VQHEESIEGEADHSGYAGEVG-----------------FRAFS 229
Query: 246 GSGRCLNG-KSSTQPTVSPSSP 266
GSG L+G K +P+ SP P
Sbjct: 230 GSGNRLDGKKKGVEPSPSPIKP 251
>sp|P70362|UFD1_MOUSE Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus
GN=Ufd1l PE=1 SV=2
Length = 307
Score = 232 bits (591), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 166/262 (63%), Gaps = 34/262 (12%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+CGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFK 185
KAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +K
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 186 EPEKPSSSSLSNRTLPEVKEEPPLDFKGPEKPSSSSLSNRTPPEVKEEPPKKIAKFSPFT 245
EPE+P V+ E ++ + + + F F+
Sbjct: 199 EPERP------------VQHEESIEGEADHSGYAGEVG-----------------FRAFS 229
Query: 246 GSGRCLNG-KSSTQPTVSPSSP 266
GSG L+G K +P+ SP P
Sbjct: 230 GSGNRLDGKKKGVEPSPSPIKP 251
>sp|Q92890|UFD1_HUMAN Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens
GN=UFD1L PE=1 SV=3
Length = 307
Score = 231 bits (588), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 117/262 (44%), Positives = 165/262 (62%), Gaps = 34/262 (12%)
Query: 10 FERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
F +YRC+ +S + D+ +E G KI+MPPSALD+L+ L+I YPMLF+L+N ++ R+T
Sbjct: 19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMT 78
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+CGV+EF+ADEG+ YLP+WMM+N+LL+EG +V+V++ +L +Y K QP + DFLDI+NP
Sbjct: 79 HCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNP 138
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFK 185
KAVLE LR+++CLTTGD I + YN K Y + V+ETKP AVSIIE D VDF PL +K
Sbjct: 139 KAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYK 198
Query: 186 EPEKPSSSSLSNRTLPEVKEEPPLDFKGPEKPSSSSLSNRTPPEVKEEPPKKIAKFSPFT 245
EPE+ +V+ E + + + L F F+
Sbjct: 199 EPER------------QVQHEESTEGEADHSGYAGELG-----------------FRAFS 229
Query: 246 GSGRCLNG-KSSTQPTVSPSSP 266
GSG L+G K +P+ SP P
Sbjct: 230 GSGNRLDGKKKGVEPSPSPIKP 251
>sp|Q9VTF9|UFD1_DROME Ubiquitin fusion degradation protein 1 homolog OS=Drosophila
melanogaster GN=Ufd1-like PE=2 SV=1
Length = 316
Score = 212 bits (540), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 95/188 (50%), Positives = 133/188 (70%), Gaps = 3/188 (1%)
Query: 10 FERKYRCYPISFI---DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTY 66
F Y+C+ +S + ++ +E G KI+MPPSALD L L++EYPMLF+L+N R ++
Sbjct: 17 FHANYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTNVKKSRSSH 76
Query: 67 CGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPK 126
GV+EF+ADEG YLP+WMMEN+LL EGDI+ +++ SL ++ K QPH+ DFLDI+NPK
Sbjct: 77 AGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPK 136
Query: 127 AVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKE 186
AVLE LR+++CLT GD I + YN K Y + V+ETKP AVSIIE D V+F P+ +K+
Sbjct: 137 AVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKD 196
Query: 187 PEKPSSSS 194
+ +S
Sbjct: 197 HSETQASG 204
>sp|O42915|UFD1_SCHPO Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ufd1 PE=2 SV=4
Length = 342
Score = 197 bits (502), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 88/192 (45%), Positives = 138/192 (71%), Gaps = 6/192 (3%)
Query: 1 AYENHHDAAFERKYRCYPISFI---DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELS 57
A+ N+ + F+ +YRCYP++ I ++P++ G K+++PPSAL++L+ L++ YPMLF+
Sbjct: 23 AFHNNVNQRFDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFE 82
Query: 58 NTSAGRVTYCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTK 117
N +A + T+ GV+EFIA+EG +YLPYWMM + L+ GD+V V N +A+GSYVKLQP +
Sbjct: 83 NEAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSV 142
Query: 118 DFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTA---VSIIETDC 174
+FLDI++ +AVLE LR++S LT D + YN++ Y I V++ +P + VS++ETD
Sbjct: 143 NFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDL 202
Query: 175 EVDFIPPLDFKE 186
VDF PP+ ++E
Sbjct: 203 VVDFDPPIGYEE 214
>sp|P53044|UFD1_YEAST Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD1 PE=1 SV=1
Length = 361
Score = 191 bits (484), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 89/186 (47%), Positives = 125/186 (67%), Gaps = 7/186 (3%)
Query: 10 FERKYRCYPISF----IDKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVT 65
FE +RCYPI+ I K G KI +PPSAL +L+ L+I YPMLF+L+ GRVT
Sbjct: 21 FEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVT 80
Query: 66 YCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNP 125
+ GV+EFIA+EG +YLP WMME + +Q G ++++ + + G +VKL+P + DFLDIS+P
Sbjct: 81 HGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDP 140
Query: 126 KAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKP---STAVSIIETDCEVDFIPPL 182
KAVLE LR++S LT D I + YN K + I ++E KP S ++ +IETD DF PP+
Sbjct: 141 KAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPPV 200
Query: 183 DFKEPE 188
+ EP+
Sbjct: 201 GYVEPD 206
>sp|Q19584|UFD1_CAEEL Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis
elegans GN=ufd-1 PE=2 SV=1
Length = 342
Score = 157 bits (398), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 92/240 (38%), Positives = 132/240 (55%), Gaps = 26/240 (10%)
Query: 30 GDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGVMEFIADEGLIYLPYWMMENM 89
G KI++P SAL+ L +I PMLF+L+N + RVT+CGV+EF A EG LP WMM+ +
Sbjct: 47 GGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQL 106
Query: 90 LLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPY 149
L +GD + +++A+L K ++ KL+P + +FL+I+NPKAVLE LR Y+CLT D I Y
Sbjct: 107 GLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSY 166
Query: 150 NNKKYYINVVETKPSTAVSIIETDCEVDFIPPLDFKEPEKPSSSSLSNRTLPEVKEEPPL 209
+ VV+ KP+ +V IIE D +DF PP + E + + P V +PP
Sbjct: 167 AGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYVEQPR--------QVTPAVTAKPPA 218
Query: 210 ----DFKGP-EKPSSSSLSNRTPPEVKEEPPKKIAKFSPFTGSGRCLNGKSSTQPTVSPS 264
F G +K S + + V F G+GR L+GK +VS S
Sbjct: 219 PDASAFIGAGQKAGGSGGTGQNATSV-------------FGGAGRRLDGKKKPSSSVSLS 265
>sp|C4Y5P7|RTC1_CLAL4 Restriction of telomere capping protein 1 OS=Clavispora lusitaniae
(strain ATCC 42720) GN=RTC1 PE=3 SV=1
Length = 1158
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 186 EPEKPSSSSLSNRTLPEVKEEPPLDFKGPEKPSSSSLSNRTPPEV---KEEPPKKIAKFS 242
EP S+ +S T+ K + +D K P + S++++S PE+ E P K IAK S
Sbjct: 781 EPRNNLSTKVSLSTMSSQKSKA-IDIKAPRRYSNNAMSASMSPEIFASSESPLKHIAKLS 839
Query: 243 PFTGSGRCLNGKSSTQPTVSPSSPLIDNPQQNAANGINGSKSSSA 287
P R G S + P+ S D +N ++GS +SS
Sbjct: 840 P----SRSQTGHSWSIPSSSH-----DLDDENMPASVSGSLASSG 875
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.129 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 136,191,351
Number of Sequences: 539616
Number of extensions: 6027676
Number of successful extensions: 19724
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 410
Number of HSP's that attempted gapping in prelim test: 18161
Number of HSP's gapped (non-prelim): 1431
length of query: 342
length of database: 191,569,459
effective HSP length: 118
effective length of query: 224
effective length of database: 127,894,771
effective search space: 28648428704
effective search space used: 28648428704
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)