Query 047222
Match_columns 342
No_of_seqs 219 out of 350
Neff 4.5
Searched_HMMs 29240
Date Mon Mar 25 15:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zc1_A Ubiquitin fusion degrad 100.0 1.2E-78 4.2E-83 556.3 16.9 184 7-190 18-208 (208)
2 2yuj_A Ubiquitin fusion degrad 100.0 3E-74 1E-78 521.3 19.1 172 9-180 15-190 (190)
3 1cz4_A VCP-like ATPase; double 99.4 8.7E-13 3E-17 118.3 13.3 144 30-180 21-174 (185)
4 3qwz_A Transitional endoplasmi 99.4 2.4E-12 8.2E-17 118.0 14.9 146 30-180 39-189 (211)
5 3tiw_A Transitional endoplasmi 99.4 5.2E-12 1.8E-16 113.8 15.8 144 30-178 36-184 (187)
6 1wlf_A PEX1, peroxisome biogen 99.1 3.5E-10 1.2E-14 100.9 9.1 147 29-180 23-177 (179)
7 3cf2_A TER ATPase, transitiona 97.6 0.0004 1.4E-08 74.3 13.3 142 31-177 37-183 (806)
8 2jv2_A Putative uncharacterize 97.3 0.00096 3.3E-08 53.0 8.4 69 106-179 11-80 (83)
9 1ypw_A Transitional endoplasmi 97.1 0.0056 1.9E-07 65.0 14.3 136 31-170 37-177 (806)
10 3hu3_A Transitional endoplasmi 96.5 0.09 3.1E-06 52.8 17.3 144 30-178 36-184 (489)
11 1yfb_A Transition state regula 90.3 0.68 2.3E-05 34.2 6.1 39 74-116 19-57 (59)
12 1cr5_A SEC18P (residues 22 - 2 89.2 1.5 5.3E-05 38.8 8.6 88 75-162 54-154 (189)
13 2glw_A PHS018, 92AA long hypot 88.7 1.4 4.8E-05 35.1 7.2 68 75-149 13-84 (92)
14 1cz4_A VCP-like ATPase; double 87.4 0.36 1.2E-05 42.8 3.4 82 76-171 21-102 (185)
15 1qcs_A N-ethylmaleimide sensit 87.4 1.7 5.7E-05 39.2 7.8 88 75-162 60-157 (211)
16 3tiw_A Transitional endoplasmi 85.4 0.44 1.5E-05 42.5 2.8 71 75-150 35-105 (187)
17 2l66_A SSO7C4, transcriptional 85.0 0.74 2.5E-05 32.7 3.3 38 74-115 9-46 (53)
18 3qwz_A Transitional endoplasmi 81.5 0.72 2.5E-05 41.9 2.6 85 75-172 38-122 (211)
19 2glw_A PHS018, 92AA long hypot 79.6 6.6 0.00023 31.2 7.4 72 27-101 11-84 (92)
20 3cf2_A TER ATPase, transitiona 75.3 2.5 8.6E-05 45.3 4.9 86 75-173 35-120 (806)
21 3hu3_A Transitional endoplasmi 65.5 4.3 0.00015 40.6 3.8 85 48-149 20-104 (489)
22 1s3s_G P47 protein; AAA ATPase 61.6 1.9 6.6E-05 35.9 0.4 17 238-254 4-20 (127)
23 1mvf_D MAZE protein, PEMI-like 56.8 16 0.00054 27.6 4.8 36 77-116 13-48 (82)
24 3cgm_A SLYD, peptidyl-prolyl C 56.8 74 0.0025 27.1 9.6 92 70-183 27-122 (158)
25 2kfw_A FKBP-type peptidyl-prol 55.6 17 0.00058 32.4 5.5 92 70-183 32-126 (196)
26 2w1t_A Spovt, stage V sporulat 54.2 10 0.00036 33.7 3.8 41 73-116 10-50 (178)
27 1wlf_A PEX1, peroxisome biogen 54.0 4.8 0.00016 35.3 1.6 71 75-148 23-93 (179)
28 2oyn_A Hypothetical protein MJ 49.5 14 0.00048 32.0 3.8 29 67-102 105-133 (146)
29 2k8i_A SLYD, peptidyl-prolyl C 48.5 52 0.0018 28.4 7.4 92 70-183 32-126 (171)
30 1eik_A RNA polymerase subunit 46.2 24 0.00083 27.4 4.3 31 83-113 43-73 (77)
31 1hmj_A RPB5, protein (subunit 41.7 23 0.00079 27.6 3.6 30 84-113 42-71 (78)
32 1ypw_A Transitional endoplasmi 41.5 14 0.00049 39.0 3.2 86 47-149 19-104 (806)
33 1ss6_A P47, NSFL1 cofactor P47 41.2 9 0.00031 31.1 1.2 15 239-253 80-94 (102)
34 1a62_A RHO; transcription term 40.4 22 0.00074 29.8 3.5 43 64-107 49-106 (130)
35 2ki8_A Tungsten formylmethanof 37.4 24 0.00083 29.5 3.4 29 75-103 51-79 (146)
36 2k52_A Uncharacterized protein 32.0 62 0.0021 23.9 4.6 54 89-148 1-55 (80)
37 2fhd_A RAD9 homolog, DNA repai 31.8 13 0.00044 32.5 0.7 31 81-113 54-84 (153)
38 1yle_A Arginine N-succinyltran 30.7 47 0.0016 32.3 4.6 45 53-100 291-338 (342)
39 3o27_A Putative uncharacterize 29.8 44 0.0015 25.5 3.3 25 77-101 25-49 (68)
40 4ayb_H DNA-directed RNA polyme 29.3 64 0.0022 25.3 4.3 31 83-113 49-79 (84)
41 4duh_A DNA gyrase subunit B; s 28.7 52 0.0018 29.6 4.3 48 103-150 160-208 (220)
42 2z0t_A Putative uncharacterize 28.0 24 0.00081 29.0 1.7 31 130-162 23-55 (109)
43 1ss6_A P47, NSFL1 cofactor P47 28.0 23 0.00078 28.7 1.6 13 328-340 80-92 (102)
44 3ttz_A DNA gyrase subunit B; p 27.6 58 0.002 28.7 4.3 47 104-150 134-181 (198)
45 2ylm_A Ubiquitin carboxyl-term 27.4 90 0.0031 31.5 6.2 84 53-150 134-217 (530)
46 2ln7_A LPXTG-SITE transpeptida 27.2 66 0.0022 26.9 4.4 25 137-161 74-98 (147)
47 3k3s_A Altronate hydrolase; st 26.2 19 0.00065 29.6 0.8 32 81-112 17-48 (105)
48 3idw_A Actin cytoskeleton-regu 25.2 4.1 0.00014 31.6 -3.2 17 83-99 41-57 (72)
49 4dni_A Fusion protein of RNA-e 24.5 50 0.0017 30.8 3.4 56 116-173 190-257 (257)
50 4emv_A DNA topoisomerase IV, B 23.7 64 0.0022 29.2 3.9 47 104-150 168-214 (226)
51 3fdr_A Tudor and KH domain-con 23.4 2E+02 0.0069 21.7 6.2 30 138-167 27-58 (94)
52 1b12_A Signal peptidase I; ser 22.9 86 0.0029 28.1 4.6 44 135-178 46-93 (248)
53 3dlm_A Histone-lysine N-methyl 20.7 1.9E+02 0.0065 26.4 6.4 64 110-173 123-193 (213)
54 2loj_A Putative cytoplasmic pr 20.7 1.2E+02 0.0039 22.9 4.1 22 139-160 34-55 (63)
55 1t2w_A Sortase; transpeptidase 20.5 1.1E+02 0.0037 25.2 4.4 24 138-161 74-97 (145)
56 2kr7_A FKBP-type peptidyl-prol 20.5 2.3E+02 0.008 23.5 6.5 91 70-182 37-130 (151)
57 3db3_A E3 ubiquitin-protein li 20.4 93 0.0032 27.4 4.0 31 132-162 86-123 (161)
58 4dt4_A FKBP-type 16 kDa peptid 20.3 2.6E+02 0.0088 24.1 6.9 92 69-182 54-149 (169)
No 1
>1zc1_A Ubiquitin fusion degradation protein 1; UFD1, double-PSI-beta-barrel, protein turnover; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-78 Score=556.28 Aligned_cols=184 Identities=47% Similarity=0.901 Sum_probs=180.1
Q ss_pred cccccccEEEeeeecc----cCCCCCCCCeEecCHHHHHHHHhcCCCCCeEEEEEeCCCCCEEEEEEeeeeeCCCcEecc
Q 047222 7 DAAFERKYRCYPISFI----DKPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGVMEFIADEGLIYLP 82 (342)
Q Consensus 7 ~~~F~~~~rcyp~s~~----~k~~~~~GdKIiLPpSaL~~L~~l~i~~PmlF~L~n~~~~r~th~GVLEF~AeEG~i~LP 82 (342)
.++|+++|||||++|+ +|+++++||||+||||||++|+++|++|||+|+|+|..++++||||||||+|+||+||||
T Consensus 18 ~~~f~~~~rc~~~~~~p~~~~r~~~~~GdKIiLP~SaL~~L~~~~i~~Pm~F~l~n~~~~~~th~GVlEF~A~EG~v~lP 97 (208)
T 1zc1_A 18 PQTFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLP 97 (208)
T ss_dssp CEEEEEEEEEEEGGGSCTTTSCHHHHHSSEEEECHHHHHHHHHTTCCSSCCEEEECTTTCCEEEEEEEEECCSSCEEEEC
T ss_pred cccccceEEEEEEEeccCcccccccCCCCeEECCHHHHHHHHHCCCCcCEEEEEEeCCCCCEEEEEEEEEEcCCCeEEcC
Confidence 4789999999999996 888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccCeeccCCCEEEEeeCCEEEEEEEEeec
Q 047222 83 YWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETK 162 (342)
Q Consensus 83 ~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~LRnystLT~Gd~I~I~yn~~~y~l~V~e~k 162 (342)
+|||++|+|++||.|+|++++||||||||||||+.+|+||+|||||||++||||+|||+||+|.|+||++.|+|+|+|+|
T Consensus 98 ~wmm~~L~l~~gd~V~i~~~~LPkgt~vklqP~~~~Fldi~npKavLE~~LRnfstLT~Gd~I~i~~~~~~y~l~V~e~k 177 (208)
T 1zc1_A 98 QWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVK 177 (208)
T ss_dssp HHHHHHHTCCTTCEEEEEEEECCCCSEEEEECCHHHHHTSSCHHHHHHHHHHHCSCEESSSEEEEEETTEEEEEEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEEeEcCCCCEEEEeECccccccccCHHHHHHHHhhcCccccCCCEEEEEeCCEEEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC---eeEEEecceeEeecCCCCCCCCCCC
Q 047222 163 PST---AVSIIETDCEVDFIPPLDFKEPEKP 190 (342)
Q Consensus 163 P~~---aVsIIdTDleVDf~pPldy~ep~~~ 190 (342)
|++ |||||||||+|||+||+||+||+++
T Consensus 178 P~~~~~aV~IidTDleVDf~~p~~y~ep~~~ 208 (208)
T 1zc1_A 178 PESSSKSICVIETDLVTDFAPPVGYVEPDYK 208 (208)
T ss_dssp CSSTTCEECCSSSCSEEEECCCCCCCCCCCC
T ss_pred CCCCCceEEEEeCceEEEecCCCCCcCCCCC
Confidence 997 9999999999999999999999873
No 2
>2yuj_A Ubiquitin fusion degradation 1-like; ubiquitin-dependent proteolytic, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=3e-74 Score=521.27 Aligned_cols=172 Identities=55% Similarity=1.019 Sum_probs=168.9
Q ss_pred cccccEEEeeeeccc----CCCCCCCCeEecCHHHHHHHHhcCCCCCeEEEEEeCCCCCEEEEEEeeeeeCCCcEeccHH
Q 047222 9 AFERKYRCYPISFID----KPHLENGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGVMEFIADEGLIYLPYW 84 (342)
Q Consensus 9 ~F~~~~rcyp~s~~~----k~~~~~GdKIiLPpSaL~~L~~l~i~~PmlF~L~n~~~~r~th~GVLEF~AeEG~i~LP~W 84 (342)
+|+++|||||+||+. |+++++||||+||||||++|+++|++|||+|+|+|..++|+||||||||+|+||+||||+|
T Consensus 15 ~f~~~~~cy~~s~~~~~~~r~~~~~GdKI~LP~SaL~~L~~~~i~~Pm~F~l~n~~~~r~th~GVlEFsA~EG~i~lP~w 94 (190)
T 2yuj_A 15 RFSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHW 94 (190)
T ss_dssp SCEEEEEEECSTTSSSSSCCSTTTTTTEEECCHHHHHHHHHTTCCSSCEEEEEETTTTEEEEEEEEECCCBTTBEECCSH
T ss_pred cccceEEEEehhHcCCcccccccCCCCeEECcHHHHHHHHHCCCCcCeEEEEecCCCCceEEEEEEEEecCCCeEEeCHH
Confidence 399999999999974 7899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccCeeccCCCEEEEeeCCEEEEEEEEeecCC
Q 047222 85 MMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPS 164 (342)
Q Consensus 85 Mm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~LRnystLT~Gd~I~I~yn~~~y~l~V~e~kP~ 164 (342)
||++|+|++||.|+|++++||||||||||||+++|+||+|||||||++||||+|||+||+|.|+||++.|+|+|+|+||+
T Consensus 95 mm~~L~l~~gd~V~v~~~~LPkgt~vklqP~~~~Fl~i~npKavLE~~LrnfstLT~Gd~I~I~~~~~~y~l~V~e~kP~ 174 (190)
T 2yuj_A 95 MMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPD 174 (190)
T ss_dssp HHHHHTCCTTEEEEEEEECCCCCSEEEEEESSHHHHHSSCHHHHHHHHHTTCCEECTTCEEEEESSSCEEEEEEEEESSS
T ss_pred HHHhcCCCCCCEEEEEEeecCCCcEEEEEECCccccccccHHHHHHHHHhcCcccccCCEEEEEeCCEEEEEEEEEEcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEecceeEeecC
Q 047222 165 TAVSIIETDCEVDFIP 180 (342)
Q Consensus 165 ~aVsIIdTDleVDf~p 180 (342)
+|||||||||+|||+|
T Consensus 175 ~aV~IidTDl~vDf~p 190 (190)
T 2yuj_A 175 KAVSIIECDMNVDFDA 190 (190)
T ss_dssp SSEECSSCCCEEEECC
T ss_pred CeEEEEeCCEEEEecC
Confidence 9999999999999986
No 3
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=99.44 E-value=8.7e-13 Score=118.29 Aligned_cols=144 Identities=20% Similarity=0.190 Sum_probs=120.0
Q ss_pred CCeEecCHHHHHHHHhcCCCCCeEEEEEeCCCCCEEEEEEee-eeeC--CCcEeccHHHHHHcCCCCCCEEEEEEeecCC
Q 047222 30 GDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGVME-FIAD--EGLIYLPYWMMENMLLQEGDIVEVKNASLAK 106 (342)
Q Consensus 30 GdKIiLPpSaL~~L~~l~i~~PmlF~L~n~~~~r~th~GVLE-F~Ae--EG~i~LP~WMm~~L~l~~gd~V~i~~~~LPk 106 (342)
-+.+.|+|++|++|. +..==+.+|+ ..|.|+|-|+. +..+ .|.|.|..|+++|+++..||.|.|+-+.++.
T Consensus 21 r~ivrl~p~~m~~Lg---l~~GD~V~I~---G~r~t~a~v~~~~~ed~~~g~Irid~~~R~N~gv~iGD~V~V~~~~~~~ 94 (185)
T 1cz4_A 21 MSRVRLDESSRRLLD---AEIGDVVEIE---KVRKTVGRVYRARPEDENKGIVRIDSVMRNNCGASIGDKVKVRKVRTEI 94 (185)
T ss_dssp SSEEEECHHHHHTTC---CCTTCEEEEE---SSSEEEEEEEECSSTTTTTSEEECCHHHHHHHTCCTTCEEEEEEECCCB
T ss_pred CCEEEECHHHHHHcC---CCCCCEEEEE---cCCeEEEEEEEcCcCcCCCCEEEeCHHHHhccCCCCCCEEEEEECCCCC
Confidence 356999999998775 3322347776 45789999986 3334 6899999999999999999999999999999
Q ss_pred cceEEEeeCC---cCcCCcCCcHHHHHHhhccCeeccCCCEEEEee---CCE-EEEEEEEeecCCCeeEEEecceeEeec
Q 047222 107 GSYVKLQPHT---KDFLDISNPKAVLETTLRSYSCLTTGDTIMVPY---NNK-KYYINVVETKPSTAVSIIETDCEVDFI 179 (342)
Q Consensus 107 Gt~vkLqP~s---~~FldisnpKavLE~~LRnystLT~Gd~I~I~y---n~~-~y~l~V~e~kP~~aVsIIdTDleVDf~ 179 (342)
|+.|.|.|.+ ..+.-..|....|...|+++. |++||+|.+.+ .+. ...|.|++++|..++|+|..|-+|++.
T Consensus 95 A~~V~l~P~~~~~~~~~~~~~~~~~l~~~l~~rp-v~~Gd~v~v~~~~~~g~~~~~f~Vv~t~P~~~~v~Vt~~T~I~i~ 173 (185)
T 1cz4_A 95 AKKVTLAPIIRKDQRLKFGEGIEEYVQRALIRRP-MLEQDNISVPGLTLAGQTGLLFKVVKTLPSKVPVEIGEETKIEIR 173 (185)
T ss_dssp CSEEEEEEECSTTCCSCCCSSHHHHHHHHHTTCE-ECTTCEECCSSCCCSSCCCCEEEEEEESSSSSCEECCTTCEEEEC
T ss_pred ccEEEEecccccccccccccchHHHHHHHHCCCc-ccCCCEEEEeeeccCCCeEEEEEEEEEcCCCceEEEcCCeEEEEC
Confidence 9999999985 444323677889999999985 99999999986 667 899999999998878999999999995
Q ss_pred C
Q 047222 180 P 180 (342)
Q Consensus 180 p 180 (342)
.
T Consensus 174 ~ 174 (185)
T 1cz4_A 174 E 174 (185)
T ss_dssp S
T ss_pred C
Confidence 3
No 4
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=99.42 E-value=2.4e-12 Score=118.03 Aligned_cols=146 Identities=18% Similarity=0.261 Sum_probs=122.2
Q ss_pred CCeEecCHHHHHHHHhcCCCCCeEEEEEeCCCCCEEEEEEeee-eeCCCcEeccHHHHHHcCCCCCCEEEEEEe-ecCCc
Q 047222 30 GDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGVMEF-IADEGLIYLPYWMMENMLLQEGDIVEVKNA-SLAKG 107 (342)
Q Consensus 30 GdKIiLPpSaL~~L~~l~i~~PmlF~L~n~~~~r~th~GVLEF-~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~-~LPkG 107 (342)
.+.+.|+|+++++|. |..==+.+|+. ...+.|+|-|+.. ..++|.|.|..|+++||++..||.|.|+-+ .++.|
T Consensus 39 rgivrl~p~~m~~Lg---l~~GD~V~I~G-kr~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A 114 (211)
T 3qwz_A 39 NSVVSLSQPKMDELQ---LFRGDTVLLKG-XKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 114 (211)
T ss_dssp TTEEEECHHHHHHHT---CCBTCEEEEEC-STTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCCBC
T ss_pred CcEEEECHHHHHHcC---CCCCCEEEEeC-CCCCcEEEEEEeCCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCc
Confidence 678999999998875 33223678884 2344899999865 456899999999999999999999999999 89999
Q ss_pred ceEEEeeCCcCcCCcCC--cHHHHHHhhc-cCeeccCCCEEEEeeCCEEEEEEEEeecCCCeeEEEecceeEeecC
Q 047222 108 SYVKLQPHTKDFLDISN--PKAVLETTLR-SYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFIP 180 (342)
Q Consensus 108 t~vkLqP~s~~Fldisn--pKavLE~~LR-nystLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsIIdTDleVDf~p 180 (342)
+.|.|.|.+..+-.|.. ...+|...|. +|-.|++||+|.|.+.++.++|.|++++|. .+|+|..|-+|++..
T Consensus 115 ~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rPV~~GD~i~v~~~~~~v~f~Vv~t~P~-g~viV~~~T~I~~~~ 189 (211)
T 3qwz_A 115 KRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFXVVETDPS-PYCIVAPDTVIHCEG 189 (211)
T ss_dssp SEEEEEEBGGGCTTCCSCHHHHTTHHHHTTCCEEEETTCEEECCCTTSCCEEEEEEEESS-SEEEECTTCEEECCS
T ss_pred eEEEEeccCcchhccCchhHHHHHHHHHhhCCceeecCCEEEEccCCcEEEEEEEeecCC-CCEEECCCcEEEEcC
Confidence 99999998655533443 3677888888 499999999999999999999999999997 689999999998853
No 5
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=99.41 E-value=5.2e-12 Score=113.81 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=116.5
Q ss_pred CCeEecCHHHHHHHHhcCCCCCeEEEEEeCCCCCEEEEEEeee-eeCCCcEeccHHHHHHcCCCCCCEEEEEEe-ecCCc
Q 047222 30 GDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGVMEF-IADEGLIYLPYWMMENMLLQEGDIVEVKNA-SLAKG 107 (342)
Q Consensus 30 GdKIiLPpSaL~~L~~l~i~~PmlF~L~n~~~~r~th~GVLEF-~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~-~LPkG 107 (342)
.+.+.|+|+++++|. +..==+.+|+.. ..+.|+|-|+.. ..++|.|.|..|+++||++..||.|.|+-+ .++.|
T Consensus 36 ~givrl~p~~m~~Lg---l~~GD~V~I~Gk-r~k~Tva~v~~~~~~~~g~Irid~~~R~N~gV~iGD~V~V~~~~~v~~A 111 (187)
T 3tiw_A 36 NSVVSLSQPKMDELQ---LFRGDTVLLKGK-KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 111 (187)
T ss_dssp TTEEEECHHHHHHHT---CCTTCEEEEECS-TTCEEEEEEEECTTSCTTEEEECHHHHHHTTCCTTCEEEEEECTTCEEC
T ss_pred CcEEEECHHHHHHcC---CCCCCEEEEECC-CCCeEEEEEEECCCCCCCEEEeCHHHHhhcCCCCCCEEEEEECCCCCCc
Confidence 678999999998886 322225788842 344899999875 456899999999999999999999999999 89999
Q ss_pred ceEEEeeCCcCcCCcC-C-cHHHHHHhhcc-CeeccCCCEEEEeeCCEEEEEEEEeecCCCeeEEEecceeEee
Q 047222 108 SYVKLQPHTKDFLDIS-N-PKAVLETTLRS-YSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDF 178 (342)
Q Consensus 108 t~vkLqP~s~~Fldis-n-pKavLE~~LRn-ystLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsIIdTDleVDf 178 (342)
+.|.|.|.+...-.++ | ....|...|.. |-.+++||+|.|.+.++.++|.|++++|+ .+|+|..|-+|.+
T Consensus 112 ~~V~LaP~~~~i~~i~~~~~~~~lk~~l~~~~rpV~~GD~i~v~~~~~~v~f~Vv~t~P~-~~v~V~~~T~I~~ 184 (187)
T 3tiw_A 112 KRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPS-PYCIVAPDTVIHC 184 (187)
T ss_dssp SEEEEEECCCC-----CCHHHHTHHHHHTTTCCEEETTCEEEEECSSSEEEEEEEEEESS-SEEECCTTCEEEC
T ss_pred eEEEEeccccchhhccchhHHHHHHHHhccCCceeeCCCEEEEccCCCEEEEEEEEecCC-CCEEECCCcEEEe
Confidence 9999999864432243 2 36778888884 99999999999999999999999999997 6778877776665
No 6
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=99.07 E-value=3.5e-10 Score=100.93 Aligned_cols=147 Identities=16% Similarity=0.194 Sum_probs=120.9
Q ss_pred CCCeEecCHHHHHHHHhcCCCCCeEEEEEeCCCCCEEEEEEeeeee----CCCcEeccHHHHHHcCCCCCCEEEEEE-ee
Q 047222 29 NGDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGVMEFIA----DEGLIYLPYWMMENMLLQEGDIVEVKN-AS 103 (342)
Q Consensus 29 ~GdKIiLPpSaL~~L~~l~i~~PmlF~L~n~~~~r~th~GVLEF~A----eEG~i~LP~WMm~~L~l~~gd~V~i~~-~~ 103 (342)
..+-+-||++++++|. +..=-.-+|+- ..+..++|...+.. ..+.|-|..-+.+|||+..||.|.|+- .+
T Consensus 23 ~~~~vrL~~~~~~~L~---~~~gd~VeI~g--~~~t~~~~w~~~~~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~V~~~~~ 97 (179)
T 1wlf_A 23 RDCFLHLPRRLVAQLH---LLQNQAIEVAS--DHQPTYLSWVEGRHFNDQSENVAEINRQVGQKLGLSSGDQVFLRPCSH 97 (179)
T ss_dssp SSSCEEECHHHHHHTT---CCTTCCEEEES--SSCCEEECEEECSSCC---CCEEEEEHHHHHHTTCCTTCEEEEEECSC
T ss_pred CCcEEECCHHHHHHcC---CCCCcEEEEEe--CCeeEEEEEECCCCcccCCCCEEEECHHHHhHCCCCCCCEEEEEECCC
Confidence 5567899999998875 33334677874 34567888888765 478999999999999999999999998 79
Q ss_pred cCCcceEEEeeCCcCcCCc-CCcHHHHHHhhcc-CeeccCCCEEEEeeCC-EEEEEEEEeecCCCeeEEEecceeEeecC
Q 047222 104 LAKGSYVKLQPHTKDFLDI-SNPKAVLETTLRS-YSCLTTGDTIMVPYNN-KKYYINVVETKPSTAVSIIETDCEVDFIP 180 (342)
Q Consensus 104 LPkGt~vkLqP~s~~Fldi-snpKavLE~~LRn-ystLT~Gd~I~I~yn~-~~y~l~V~e~kP~~aVsIIdTDleVDf~p 180 (342)
.+.++-|.|.|.+.|-++| .+.-..||..|.+ +-++++||+|.|+..+ ....|.|+.+.|...+++|..|-||.++|
T Consensus 98 ~~~A~~V~laP~~~dD~ei~e~~a~~le~~Ll~QiR~v~~G~~i~v~~~g~~~i~f~V~~~~P~~~~v~It~~TeI~v~p 177 (179)
T 1wlf_A 98 VVSCQQVEVEPLSADDWEILELHAISLEQHLLDQIRIVFPKAVVPIWVDQQTYIFIQIVTLMPAAPYGRLETNTKLLIQP 177 (179)
T ss_dssp CEECSEEEEEESSHHHHHHHHHSCSSHHHHHHHHCCEECTTCEEEEESSSSCEEEEEEEEEESCCSSEECCTTCEEEECC
T ss_pred CccceEEEEEcCCcCCeEEehhHHHHHHHHHhcCceeccCCCEEEEEecCCeEEEEEEEEeeCCCCeEEECCCcEEEEec
Confidence 9999999999998664444 4455667888885 8899999999999766 78899999999977889999999999865
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.63 E-value=0.0004 Score=74.34 Aligned_cols=142 Identities=18% Similarity=0.268 Sum_probs=100.7
Q ss_pred CeEecCHHHHHHHHhcCCCCCeEEEEEeCCCCCEEEEEEee-eeeCCCcEeccHHHHHHcCCCCCCEEEEEEe-ecCCcc
Q 047222 31 DKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGVME-FIADEGLIYLPYWMMENMLLQEGDIVEVKNA-SLAKGS 108 (342)
Q Consensus 31 dKIiLPpSaL~~L~~l~i~~PmlF~L~n~~~~r~th~GVLE-F~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~-~LPkGt 108 (342)
.-|.|.|..+++|. +..==+-+|+.. ..+.+.|-++. =..+.|.|.|..-+.+||++..||.|.|+-+ .++.++
T Consensus 37 ~~~~~~~~~~~~l~---~~~gd~v~i~g~-~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~v~~gd~V~v~~~~~~~~a~ 112 (806)
T 3cf2_A 37 SVVSLSQPKMDELQ---LFRGDTVLLKGK-KRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGK 112 (806)
T ss_dssp TEEEECHHHHHHTT---CCSSCEEEEECG-GGCBCCEEEEECTTSBTTBCEECHHHHHTTTCCTTCEEEEEECCCCCBCS
T ss_pred CEEEECHHHHHHcC---CCCCCEEEEEcC-CCceEEEEEcCCCCCCCCEEEeCHHHHHhcCCCCCCEEEEEECCCCCcCC
Confidence 35889999998775 322224566532 12233343331 1345799999999999999999999999988 799999
Q ss_pred eEEEeeCCcCcCCc--CCcHHHHHHhhc-cCeeccCCCEEEEeeCCEEEEEEEEeecCCCeeEEEecceeEe
Q 047222 109 YVKLQPHTKDFLDI--SNPKAVLETTLR-SYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVD 177 (342)
Q Consensus 109 ~vkLqP~s~~Fldi--snpKavLE~~LR-nystLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsIIdTDleVD 177 (342)
.|.|.|.+...-.+ ......|...|. .+-.+++||+|.|.+.+....|.|++++|...+ +|..|=.+.
T Consensus 113 ~v~l~p~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~gd~~~v~~~~~~~~f~V~~~~P~~~~-~v~~~T~i~ 183 (806)
T 3cf2_A 113 RIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYC-IVAPDTVIH 183 (806)
T ss_dssp BEEEEEBTTTSTTCCSCHHHHTHHHHHTTTCCEEETTCEEEECCTTSCEEEEEEEESSSSEE-ECCTTSBCC
T ss_pred EEEEeccccchhccchhHHHHHHHHHHHhcCCcccCCCEEEEecCCcEEEEEEEEEeCCCCe-EECCCcEEE
Confidence 99999975332222 223555666655 467899999999999999999999999998654 444333333
No 8
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=97.31 E-value=0.00096 Score=52.95 Aligned_cols=69 Identities=23% Similarity=0.327 Sum_probs=55.6
Q ss_pred CcceEEEeeCCcCcCCc-CCcHHHHHHhhccCeeccCCCEEEEeeCCEEEEEEEEeecCCCeeEEEecceeEeec
Q 047222 106 KGSYVKLQPHTKDFLDI-SNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDFI 179 (342)
Q Consensus 106 kGt~vkLqP~s~~Fldi-snpKavLE~~LRnystLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsIIdTDleVDf~ 179 (342)
-|+-|.|.|.+ -+.+ .|.-..|-+.|+++. +++||+|.|..-++...|.|++++|. +++|.-|-++++.
T Consensus 11 ~A~kVvLAP~~--~i~~~~~~~~~lk~~L~grP-V~~GD~I~i~~~G~~i~F~Vv~t~P~--~V~Vt~~T~I~i~ 80 (83)
T 2jv2_A 11 IMSELKLKPLP--KVELPPDFVDVIRIKLQGKT-VRTGDVIGISILGKEVKFKVVQAYPS--PLRVEDRTKITLV 80 (83)
T ss_dssp CCCEEEEEESS--SCCCCHHHHHHHHHHHTTSE-ECTTCEEEEEETTEEEEEEEEEEESS--SEECCTTSEEEEC
T ss_pred EEEEEEEcCCC--ceecCccHHHHHHHHHCCCC-ccCCCEEEEeeCCCEEEEEEEEecCc--cEEECCCcEEEEE
Confidence 37889999984 2334 455667778888855 99999999998889999999999997 8899877777763
No 9
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.10 E-value=0.0056 Score=64.96 Aligned_cols=136 Identities=18% Similarity=0.266 Sum_probs=98.7
Q ss_pred CeEecCHHHHHHHHhcCCCCCeEEEEEeCCCCCEEEEEEee-eeeCCCcEeccHHHHHHcCCCCCCEEEEEEe-ecCCcc
Q 047222 31 DKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGVME-FIADEGLIYLPYWMMENMLLQEGDIVEVKNA-SLAKGS 108 (342)
Q Consensus 31 dKIiLPpSaL~~L~~l~i~~PmlF~L~n~~~~r~th~GVLE-F~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~-~LPkGt 108 (342)
+.+.|.|.++++|. +..==+-+|+... .+.|.|-|+- -..+.|.|.|...+.+|+++..||.|.|+-+ .++.|+
T Consensus 37 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 112 (806)
T 1ypw_A 37 SVVSLSQPKMDELQ---LFRGDTVLLKGKK-RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGK 112 (806)
T ss_dssp SCEEECHHHHHHHT---CCTTCEEEEEETT-TEECCEEEEECSSSCTTEEECCHHHHTTTTCCTTCEEEEEECTTCCBCS
T ss_pred CEEEECHHHHHHcC---CCCCCEEEEecCc-cCcEEEEEecCCCCCCCeEEecHHHHhhcCCCCCCEEEEEECCCCCcCc
Confidence 89999999998775 3333355677532 2356676653 2345789999999999999999999999999 799999
Q ss_pred eEEEeeCCcCcCCcC-C-cHHHHHHhhcc-CeeccCCCEEEEeeCCEEEEEEEEeecCCCeeEEE
Q 047222 109 YVKLQPHTKDFLDIS-N-PKAVLETTLRS-YSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSII 170 (342)
Q Consensus 109 ~vkLqP~s~~Fldis-n-pKavLE~~LRn-ystLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsII 170 (342)
.|.|.|-+...-.+. + ....|...|.+ +-.|++||++.+......+.|.|.++.|...+.|.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~p~~~~~v~ 177 (806)
T 1ypw_A 113 RIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVA 177 (806)
T ss_dssp EEEEEECTTTSSSCCSCCTTTTTGGGTTTTCCBCCTTCEEEECCSSSCEEEEEEEETTTTCCBCC
T ss_pred EEEEeCCccchhhcccchHHHHHHHHhccCCccccCCCEEEecCCCcceEEEEEeccCCCCceec
Confidence 999999753321121 1 11223333332 45699999999998888999999999998766555
No 10
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.55 E-value=0.09 Score=52.78 Aligned_cols=144 Identities=18% Similarity=0.260 Sum_probs=103.9
Q ss_pred CCeEecCHHHHHHHHhcCCCCCeEEEEEeCCCCCEEEEEEee-eeeCCCcEeccHHHHHHcCCCCCCEEEEEEe-ecCCc
Q 047222 30 GDKIVMPPSALDRLAYLHIEYPMLFELSNTSAGRVTYCGVME-FIADEGLIYLPYWMMENMLLQEGDIVEVKNA-SLAKG 107 (342)
Q Consensus 30 GdKIiLPpSaL~~L~~l~i~~PmlF~L~n~~~~r~th~GVLE-F~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~-~LPkG 107 (342)
.+.|.|.|+++++|. +..==+-+|.. ...+.|.|.|+- -.-+.|.|-|..-+.+|+|+.-||.|.|+-+ .+|.|
T Consensus 36 ~~~~~~~~~~~~~l~---~~~gd~v~~~g-~~~~~~~~~~~~~~~~~~~~i~~~~~~r~n~~~~~gd~v~v~~~~~~~~a 111 (489)
T 3hu3_A 36 NSVVSLSQPKMDELQ---LFRGDTVLLKG-KKRREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYG 111 (489)
T ss_dssp TTEEEECHHHHHHHT---CCTTCEEEEEC-STTCEEEEEEEECTTSCTTEEECCHHHHHHTTCCTTCEEEEEECTTCCBC
T ss_pred CCEEEECHHHHHHcC---CCCCCEEEEec-CccCcEEEEEeeCCCCCCCEEEecHHHHhhcCCCCCCEEEEEECCCCCcc
Confidence 389999999998876 33333456663 233578999862 2234789999999999999999999999999 99999
Q ss_pred ceEEEeeCCcCcCCcCCc-HHHHHHhh-c-cCeeccCCCEEEEeeCCEEEEEEEEeecCCCeeEEEecceeEee
Q 047222 108 SYVKLQPHTKDFLDISNP-KAVLETTL-R-SYSCLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETDCEVDF 178 (342)
Q Consensus 108 t~vkLqP~s~~Fldisnp-KavLE~~L-R-nystLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsIIdTDleVDf 178 (342)
+-|.|.|-+..--.+..- -..|+.-+ . .+-.+..||.+.+....+.+++.+++++|... +++..+-.+.+
T Consensus 112 ~~v~~~~~~~av~a~~~ga~d~~~Kp~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~~~~ 184 (489)
T 3hu3_A 112 KRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVHGGMRAVEFKVVETDPSPY-CIVAPDTVIHC 184 (489)
T ss_dssp SEEEEEEBGGGSSSCCSCHHHHTHHHHHTTTCEEEETTCEEEEEETTEEEEEEEEEEESSSE-EEECTTCEEEC
T ss_pred CEEEEcCCCcccccccchhHHHHhHHHHhhcCcccccCCEEEecCCCceEEEEEEeecCCCc-eEEcCCeEEEE
Confidence 999999976543223221 11222222 2 36678889999999999999999999998644 34444444444
No 11
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=90.28 E-value=0.68 Score=34.19 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=32.4
Q ss_pred eCCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCC
Q 047222 74 ADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHT 116 (342)
Q Consensus 74 AeEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s 116 (342)
...|.|.+|.=+.+.|+|++||.|.|... .+ -+.|+|..
T Consensus 19 ~~kGqItIPkeiR~~Lgi~~Gd~l~i~~~---~~-~IiL~p~~ 57 (59)
T 1yfb_A 19 DELGRVVIPIELRRTLGIAEKDALEIYVD---DE-KIILKKYK 57 (59)
T ss_dssp CTTCEEECCHHHHHHTTCCTTCEEEEEEE---TT-EEEEEECC
T ss_pred CCCCEEEeCHHHHHHcCCCCCCEEEEEEE---CC-EEEEEECC
Confidence 46799999999999999999999988764 23 58888864
No 12
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=89.16 E-value=1.5 Score=38.78 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=62.2
Q ss_pred CCCcEeccHHHHHHcCCCCCCEEEEEEeecC----CcceEEEeeCCcCcCC------c-CCcHHHHHHhhccCe--eccC
Q 047222 75 DEGLIYLPYWMMENMLLQEGDIVEVKNASLA----KGSYVKLQPHTKDFLD------I-SNPKAVLETTLRSYS--CLTT 141 (342)
Q Consensus 75 eEG~i~LP~WMm~~L~l~~gd~V~i~~~~LP----kGt~vkLqP~s~~Fld------i-snpKavLE~~LRnys--tLT~ 141 (342)
+.|+|.|-.-..+.+++.-|+.|.|+.-..| ...++-.-=.+.+|+. . -|-..+-..-+++|. .||.
T Consensus 54 ~~G~I~ls~~QR~wa~lsl~~~v~V~~y~p~~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qift~ 133 (189)
T 1cr5_A 54 PPGTIGFNGNQRTWGGWSLNQDVQAKAFDLFKYSGKQSYLGSIDIDISFRARGKAVSTVFDQDELAKQFVRCYESQIFSP 133 (189)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEEECCHHHHHTTCCEEEEEEEEEEECC-------CCCHHHHHHHHHHHHTTCEECT
T ss_pred CCCEEecCHHHHHhhcccCCCeEEEEEeCCccCCCCcceEEEEEEEEEehhcCCCCCCccCHHHHHHHHHHHHcCCCCCC
Confidence 6899999999999999999999999987553 1133322223334441 1 244555555555665 6999
Q ss_pred CCEEEEeeCCEEEEEEEEeec
Q 047222 142 GDTIMVPYNNKKYYINVVETK 162 (342)
Q Consensus 142 Gd~I~I~yn~~~y~l~V~e~k 162 (342)
|..|.+.|++..|.|.|.++.
T Consensus 134 gQ~l~f~~~g~~l~l~V~~i~ 154 (189)
T 1cr5_A 134 TQYLIMEFQGHFFDLKIRNVQ 154 (189)
T ss_dssp TCEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEECCcEEEEEEEEEE
Confidence 999999999999999888753
No 13
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=88.70 E-value=1.4 Score=35.12 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=47.7
Q ss_pred CCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcc----eEEEeeCCcCcCCcCCcHHHHHHhhccCeeccCCCEEEEee
Q 047222 75 DEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGS----YVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPY 149 (342)
Q Consensus 75 eEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt----~vkLqP~s~~FldisnpKavLE~~LRnystLT~Gd~I~I~y 149 (342)
..|.|-+|..+.+.|+|.+||.|.+..+.+..|. +...+= ..--+|.=||.+-|. --|..||.|.|.-
T Consensus 13 ~~gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~v--~~kGqitIPkeiR~~-----lgi~~Gd~l~~~~ 84 (92)
T 2glw_A 13 RIGRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTARV--GEQGSVIIPKALRDV-----IGIKPGEVIEVLL 84 (92)
T ss_dssp GGGEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEEEC--CGGGEEECCHHHHHH-----HTCCTTCEEEEEE
T ss_pred CCCEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEEEE--CcCceEECcHHHHHH-----cCCCCCCEEEEEE
Confidence 4689999999999999999999999776665555 111111 112255667766543 3688999998864
No 14
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=87.42 E-value=0.36 Score=42.79 Aligned_cols=82 Identities=16% Similarity=0.203 Sum_probs=58.0
Q ss_pred CCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccCeeccCCCEEEEeeCCEEEE
Q 047222 76 EGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKYY 155 (342)
Q Consensus 76 EG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~LRnystLT~Gd~I~I~yn~~~y~ 155 (342)
-|.|+|+.=.|+.|+|.+||.|.|+. .+.+.++.-|...+ ++.+-.--|-..+|+-.-+..||.+.|.-
T Consensus 21 r~ivrl~p~~m~~Lgl~~GD~V~I~G---~r~t~a~v~~~~~e--d~~~g~Irid~~~R~N~gv~iGD~V~V~~------ 89 (185)
T 1cz4_A 21 MSRVRLDESSRRLLDAEIGDVVEIEK---VRKTVGRVYRARPE--DENKGIVRIDSVMRNNCGASIGDKVKVRK------ 89 (185)
T ss_dssp SSEEEECHHHHHTTCCCTTCEEEEES---SSEEEEEEEECSST--TTTTSEEECCHHHHHHHTCCTTCEEEEEE------
T ss_pred CCEEEECHHHHHHcCCCCCCEEEEEc---CCeEEEEEEEcCcC--cCCCCEEEeCHHHHhccCCCCCCEEEEEE------
Confidence 37799999999999999999999985 46788888886322 11111112334556556789999999873
Q ss_pred EEEEeecCCCeeEEEe
Q 047222 156 INVVETKPSTAVSIIE 171 (342)
Q Consensus 156 l~V~e~kP~~aVsIId 171 (342)
.+++++.-|.+--
T Consensus 90 ---~~~~~A~~V~l~P 102 (185)
T 1cz4_A 90 ---VRTEIAKKVTLAP 102 (185)
T ss_dssp ---ECCCBCSEEEEEE
T ss_pred ---CCCCCccEEEEec
Confidence 3567777776653
No 15
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=87.40 E-value=1.7 Score=39.19 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=62.7
Q ss_pred CCCcEeccHHHHHHcCCCCCCEEEEEEeecCCc-ceEEEeeCCcCcCC------c-CCcHHHHHHhhccCe--eccCCCE
Q 047222 75 DEGLIYLPYWMMENMLLQEGDIVEVKNASLAKG-SYVKLQPHTKDFLD------I-SNPKAVLETTLRSYS--CLTTGDT 144 (342)
Q Consensus 75 eEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkG-t~vkLqP~s~~Fld------i-snpKavLE~~LRnys--tLT~Gd~ 144 (342)
+.|+|.|-.-..+.+++.-|+.|.|+.-..+.. .|+-.-=.+.||+. . -|-..+-..-+++|. .||.|..
T Consensus 60 ~~G~Igls~~QR~wa~lsl~~~v~V~~y~~~~~~~~l~si~lEidf~~k~~~~~~~~D~dela~~f~~~F~~Qift~gQ~ 139 (211)
T 1qcs_A 60 VPGSVAFSLPQRKWAGLSIGQEIEVALYSFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFNNQAFSVGQQ 139 (211)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEEEECCCHHHHBEEEEEEEEEESCGGGCCCCEEEHHHHHHHHHHHHTTCEEETTCE
T ss_pred CCCEeecCHHHHhhhcccCCCcEEEEEecCCCCCceEEEEEEEEEehhcCCCCCcccCHHHHHHHHHHHHcCCCCCCCCE
Confidence 689999999999999999999999987754421 23322223345552 1 233455555555665 6999999
Q ss_pred EEEeeCCEEEEEEEEeec
Q 047222 145 IMVPYNNKKYYINVVETK 162 (342)
Q Consensus 145 I~I~yn~~~y~l~V~e~k 162 (342)
|.+.|++..|.|.|.+++
T Consensus 140 l~f~~~g~~l~l~V~~v~ 157 (211)
T 1qcs_A 140 LVFSFNDKLFGLLVKDIE 157 (211)
T ss_dssp EEEEETTEEEEEEEEEEE
T ss_pred EEEEECCcEEEEEEeEEE
Confidence 999999999999888754
No 16
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=85.37 E-value=0.44 Score=42.54 Aligned_cols=71 Identities=20% Similarity=0.252 Sum_probs=52.2
Q ss_pred CCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccCeeccCCCEEEEeeC
Q 047222 75 DEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYN 150 (342)
Q Consensus 75 eEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~LRnystLT~Gd~I~I~yn 150 (342)
+.|.|.|+.=.|+.|+|.+||.|.|+..+ -+-|.++..|.. +...-+--|-..+|+-..+..||.+.|.--
T Consensus 35 D~givrl~p~~m~~Lgl~~GD~V~I~Gkr-~k~Tva~v~~~~----~~~~g~Irid~~~R~N~gV~iGD~V~V~~~ 105 (187)
T 3tiw_A 35 DNSVVSLSQPKMDELQLFRGDTVLLKGKK-RREAVCIVLSDD----TCSDEKIRMNRVVRNNLRVRLGDVISIQPC 105 (187)
T ss_dssp CTTEEEECHHHHHHHTCCTTCEEEEECST-TCEEEEEEEECT----TSCTTEEEECHHHHHHTTCCTTCEEEEEEC
T ss_pred CCcEEEECHHHHHHcCCCCCCEEEEECCC-CCeEEEEEEECC----CCCCCEEEeCHHHHhhcCCCCCCEEEEEEC
Confidence 47899999999999999999999999742 124777777763 222222234556676778999999998743
No 17
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=84.96 E-value=0.74 Score=32.73 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=30.6
Q ss_pred eCCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeC
Q 047222 74 ADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPH 115 (342)
Q Consensus 74 AeEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~ 115 (342)
...|.|.+|.=+.+.|+|++||.|.+... .+. +.|+|.
T Consensus 9 ~~kgqi~IPk~ir~~lgi~~Gd~v~i~~~---~~~-ivl~p~ 46 (53)
T 2l66_A 9 SRNYQVTIPAKVRQKFQIKEGDLVKVTFD---ESE-GVVKIQ 46 (53)
T ss_dssp CSSSCBCCCHHHHHHSCCCTTCEEEEEEC---SSS-CCEEEE
T ss_pred CCCCEEEeCHHHHHHcCcCCCCEEEEEEE---CCE-EEEEEC
Confidence 46799999999999999999999988753 233 666665
No 18
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=81.47 E-value=0.72 Score=41.95 Aligned_cols=85 Identities=18% Similarity=0.248 Sum_probs=58.7
Q ss_pred CCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccCeeccCCCEEEEeeCCEEE
Q 047222 75 DEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKY 154 (342)
Q Consensus 75 eEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~LRnystLT~Gd~I~I~yn~~~y 154 (342)
+.|.|.|+.-.|+.|+|.+||.|.|+..+ -+-|.+...|.. + ...-+--|-..+|+-..+..||.|.|.--.
T Consensus 38 Drgivrl~p~~m~~Lgl~~GD~V~I~Gkr-~k~Tva~v~~~~-~---~~~g~Irid~~~R~N~gV~iGD~V~V~~~~--- 109 (211)
T 3qwz_A 38 DNSVVSLSQPKMDELQLFRGDTVLLKGXK-RREAVCIVLSDD-T---CSDEKIRMNRVVRNNLRVRLGDVISIQPCP--- 109 (211)
T ss_dssp CTTEEEECHHHHHHHTCCBTCEEEEECST-TCEEEEEEEECT-T---SCTTEEEECHHHHHHTTCCTTCEEEEEECT---
T ss_pred CCcEEEECHHHHHHcCCCCCCEEEEeCCC-CCcEEEEEEeCC-C---CCCCEEEeCHHHHhhcCCCCCCEEEEEECC---
Confidence 47899999999999999999999999742 224777777753 2 222222245566766789999999986321
Q ss_pred EEEEEeecCCCeeEEEec
Q 047222 155 YINVVETKPSTAVSIIET 172 (342)
Q Consensus 155 ~l~V~e~kP~~aVsIIdT 172 (342)
+++++.-|.+.=+
T Consensus 110 -----~v~~A~~V~LaP~ 122 (211)
T 3qwz_A 110 -----DVKYGKRIHVLPI 122 (211)
T ss_dssp -----TCCBCSEEEEEEB
T ss_pred -----CCCCceEEEEecc
Confidence 4556666665543
No 19
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=79.57 E-value=6.6 Score=31.16 Aligned_cols=72 Identities=11% Similarity=0.273 Sum_probs=46.0
Q ss_pred CCCCCeEecCHHHHHHHHhcCCCCCeEEE-EEeCCCCCEEEEEEeee-eeCCCcEeccHHHHHHcCCCCCCEEEEEE
Q 047222 27 LENGDKIVMPPSALDRLAYLHIEYPMLFE-LSNTSAGRVTYCGVMEF-IADEGLIYLPYWMMENMLLQEGDIVEVKN 101 (342)
Q Consensus 27 ~~~GdKIiLPpSaL~~L~~l~i~~PmlF~-L~n~~~~r~th~GVLEF-~AeEG~i~LP~WMm~~L~l~~gd~V~i~~ 101 (342)
+...++|.+|.++-+.|.-..-++ +.++ +.-. .+. -....... +...|.|.+|.-+.+.|+|++||.|.+..
T Consensus 11 v~~~gqvtiP~~iR~~LgI~~GD~-V~v~~i~~~-~g~-~~~~~~~~~v~~kGqitIPkeiR~~lgi~~Gd~l~~~~ 84 (92)
T 2glw_A 11 VHRIGRIIIPAGTRKFYGIEQGDF-VEIKIVKYE-GEE-PKEGTFTARVGEQGSVIIPKALRDVIGIKPGEVIEVLL 84 (92)
T ss_dssp CBGGGEEECCHHHHHHHTCCTTCE-EEEEEEEEE-TTE-EEEEEEEEECCGGGEEECCHHHHHHHTCCTTCEEEEEE
T ss_pred EeCCCEEEecHHHHHHcCCCCCCE-EEEEEEEec-CCc-cceeEEEEEECcCceEECcHHHHHHcCCCCCCEEEEEE
Confidence 456789999999988775211111 2232 1111 111 12222223 36689999999999999999999988764
No 20
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.34 E-value=2.5 Score=45.32 Aligned_cols=86 Identities=20% Similarity=0.270 Sum_probs=55.6
Q ss_pred CCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccCeeccCCCEEEEeeCCEEE
Q 047222 75 DEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYNNKKY 154 (342)
Q Consensus 75 eEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~LRnystLT~Gd~I~I~yn~~~y 154 (342)
+.+.|+|..-.|+.|+|.+||.|.|+..+--.+.-+.+.+. ++.+-..-|-..+|.-..+..||.|.|.--
T Consensus 35 d~~~~~~~~~~~~~l~~~~gd~v~i~g~~~~~~~~~~~~~~-----~~~~~~i~~~~~~r~n~~v~~gd~V~v~~~---- 105 (806)
T 3cf2_A 35 DNSVVSLSQPKMDELQLFRGDTVLLKGKKRREAVCIVLSDD-----TCSDEKIRMNRVVRNNLRVRLGDVISIQPC---- 105 (806)
T ss_dssp CTTEEEECHHHHHHTTCCSSCEEEEECGGGCBCCEEEEECT-----TSBTTBCEECHHHHHTTTCCTTCEEEEEEC----
T ss_pred CCCEEEECHHHHHHcCCCCCCEEEEEcCCCceEEEEEcCCC-----CCCCCEEEeCHHHHHhcCCCCCCEEEEEEC----
Confidence 46789999999999999999999998765322222222222 122222223456677777899999999632
Q ss_pred EEEEEeecCCCeeEEEecc
Q 047222 155 YINVVETKPSTAVSIIETD 173 (342)
Q Consensus 155 ~l~V~e~kP~~aVsIIdTD 173 (342)
.+++++..|.|..++
T Consensus 106 ----~~~~~a~~v~l~p~~ 120 (806)
T 3cf2_A 106 ----PDVKYGKRIHVLPID 120 (806)
T ss_dssp ----CCCCBCSBEEEEEBT
T ss_pred ----CCCCcCCEEEEeccc
Confidence 245556666665443
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=65.46 E-value=4.3 Score=40.56 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=59.1
Q ss_pred CCCCeEEEEEeCCCCCEEEEEEeeeeeCCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHH
Q 047222 48 IEYPMLFELSNTSAGRVTYCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKA 127 (342)
Q Consensus 48 i~~PmlF~L~n~~~~r~th~GVLEF~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKa 127 (342)
...|.-|.+...... +-|.|+|..-.|+.|+|.+||.|.|+..+ .+.+.+...|.. ++..-..
T Consensus 20 ~~~~~~~~v~~~~~~------------d~~~~~~~~~~~~~l~~~~gd~v~~~g~~-~~~~~~~~~~~~----~~~~~~i 82 (489)
T 3hu3_A 20 KNRPNRLIVDEAINE------------DNSVVSLSQPKMDELQLFRGDTVLLKGKK-RREAVCIVLSDD----TCSDEKI 82 (489)
T ss_dssp CCCTTEEEEECCTTC------------CTTEEEECHHHHHHHTCCTTCEEEEECST-TCEEEEEEEECT----TSCTTEE
T ss_pred ccCCCeeEEccCCCC------------cCCEEEECHHHHHHcCCCCCCEEEEecCc-cCcEEEEEeeCC----CCCCCEE
Confidence 456666666653321 34899999999999999999999999642 234666766642 1222223
Q ss_pred HHHHhhccCeeccCCCEEEEee
Q 047222 128 VLETTLRSYSCLTTGDTIMVPY 149 (342)
Q Consensus 128 vLE~~LRnystLT~Gd~I~I~y 149 (342)
.+-..+|+-..+..||.|.|.-
T Consensus 83 ~~~~~~r~n~~~~~gd~v~v~~ 104 (489)
T 3hu3_A 83 RMNRVVRNNLRVRLGDVISIQP 104 (489)
T ss_dssp ECCHHHHHHTTCCTTCEEEEEE
T ss_pred EecHHHHhhcCCCCCCEEEEEE
Confidence 3556777778899999999863
No 22
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=61.56 E-value=1.9 Score=35.86 Aligned_cols=17 Identities=35% Similarity=0.626 Sum_probs=10.0
Q ss_pred CCccccceeeceecCCC
Q 047222 238 IAKFSPFTGSGRCLNGK 254 (342)
Q Consensus 238 ~~~f~~F~G~G~rLdGK 254 (342)
.+++.+|+|.||||.+=
T Consensus 4 ~~~~~~F~G~G~~Lgs~ 20 (127)
T 1s3s_G 4 KGAFKAFTGEGQKLGST 20 (127)
T ss_dssp ------CCSCCCCCCSS
T ss_pred CCCCCCceecCeECCCC
Confidence 34689999999999883
No 23
>1mvf_D MAZE protein, PEMI-like protein 1; plasmid addiction, camel antibody, addiction antidote, immun; 1.65A {Escherichia coli} SCOP: b.129.1.1 PDB: 1ub4_C
Probab=56.77 E-value=16 Score=27.57 Aligned_cols=36 Identities=17% Similarity=0.269 Sum_probs=29.5
Q ss_pred CcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCC
Q 047222 77 GLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHT 116 (342)
Q Consensus 77 G~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s 116 (342)
+.|.||.=+.+.|+|.+||.|.|... +.-+.|.|..
T Consensus 13 ~~v~iPk~~~~~lgl~~gd~v~i~~~----~~~iii~p~~ 48 (82)
T 1mvf_D 13 PAVRIPATLMQALNLNIDDEVKIDLV----DGKLIIEPVR 48 (82)
T ss_dssp EEEECCHHHHHHTTCCTTCBEEEEEE----TTEEEEEEC-
T ss_pred cEEEECHHHHHHcCCCCCCEEEEEEE----CCEEEEEECC
Confidence 57899999999999999999998653 3358888874
No 24
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=56.76 E-value=74 Score=27.05 Aligned_cols=92 Identities=16% Similarity=0.263 Sum_probs=61.4
Q ss_pred eeeeeCCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccCe---eccCCCEEE
Q 047222 70 MEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYS---CLTTGDTIM 146 (342)
Q Consensus 70 LEF~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~LRnys---tLT~Gd~I~ 146 (342)
++|.--.|.+ +|.|--.=++++.|+...|... |. .+| --.|+..|.+-.+..|. .+..|+.+.
T Consensus 27 ~~f~~G~g~v-ipG~e~aL~Gm~~Ge~~~v~ip-----------p~-~aY-G~~~~~lv~~v~~~~f~~~~~~~~G~~~~ 92 (158)
T 3cgm_A 27 LSYLHGHRNL-IPGLEEALEGREEGEAFQAHVP-----------AE-KAY-GPHDPEGVQVVPLSAFPEDAEVVPGAQFY 92 (158)
T ss_dssp EEEETTSSSS-CHHHHHHHTTCBTTCEEEEEEC-----------GG-GTT-CCCCGGGEEEEEGGGSCTTSCCCTTCEEE
T ss_pred EEEEECCCCc-ChHHHHHHcCCCCCCEEEEEEC-----------cH-HHc-CCCCcceEEEEEHHHCCCCCCCccCCEEE
Confidence 8888877765 8999999999999998876532 11 122 12344444444444554 588899998
Q ss_pred EeeCC-EEEEEEEEeecCCCeeEEEecceeEeecCCCC
Q 047222 147 VPYNN-KKYYINVVETKPSTAVSIIETDCEVDFIPPLD 183 (342)
Q Consensus 147 I~yn~-~~y~l~V~e~kP~~aVsIIdTDleVDf~pPld 183 (342)
+.-.+ +.+...|.++ -++.+.|||--||-
T Consensus 93 ~~~~~G~~~~~~V~~v--------~~~~v~vD~NHPLA 122 (158)
T 3cgm_A 93 AQDMEGNPMPLTVVAV--------EGEEVTVDFNHPLA 122 (158)
T ss_dssp EEETTTEEEEEEEEEE--------ETTEEEEECSCTTT
T ss_pred EECCCCCEEEEEEEEE--------CCCEEEEeCCcccc
Confidence 87643 5555556664 46677788887764
No 25
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=55.57 E-value=17 Score=32.37 Aligned_cols=92 Identities=11% Similarity=0.107 Sum_probs=57.9
Q ss_pred eeeeeCCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccCe---eccCCCEEE
Q 047222 70 MEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYS---CLTTGDTIM 146 (342)
Q Consensus 70 LEF~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~LRnys---tLT~Gd~I~ 146 (342)
++|..-.|. ++|-|--.=++++.|+.+.|.. |.. .+|- -.|+..|.+-.+..|. .|.+|++|.
T Consensus 32 ~~f~lG~g~-vipG~eeaL~Gm~vGe~~~v~I---ppe---------~aYG-e~~~~lV~~vp~~~f~~~~~~~~G~~~~ 97 (196)
T 2kfw_A 32 LDYLHGHGS-LISGLETALEGHEVGDKFDVAV---GAN---------DAYG-QYDENLVQRVPKDVFMGVDELQVGMRFL 97 (196)
T ss_dssp CEEESSSSS-SCHHHHHHHSSSCTTCEEEEEC---STT---------TTSS-CCCTTTCEEECGGGCCCSSCCCTTCEEE
T ss_pred EEEEECCCC-cchHHHHHHcCCCCCCEEEEEe---CcH---------HhcC-CCChhhEEEEEHHHCCCccCcccCCEEE
Confidence 445544444 5899999999999999888653 211 1232 2344444433444454 488999999
Q ss_pred EeeCCEEEEEEEEeecCCCeeEEEecceeEeecCCCC
Q 047222 147 VPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLD 183 (342)
Q Consensus 147 I~yn~~~y~l~V~e~kP~~aVsIIdTDleVDf~pPld 183 (342)
+.-.+..+...|+++. +..+.|||.-||-
T Consensus 98 ~~~~~G~~~~~V~~v~--------~~~V~vD~NHPLA 126 (196)
T 2kfw_A 98 AETDQGPVPVEITAVE--------DDHVVVDGNHMLA 126 (196)
T ss_dssp EEETTEEEEEEBCCCC--------SSSEEECCCCTTS
T ss_pred EECCCCcEEEEEEEEc--------CCEEEEeCCCCCC
Confidence 8876655555566644 5567788888774
No 26
>2w1t_A Spovt, stage V sporulation protein T; transcription, transcription regulation, repressor, activator, DNA-binding; 2.60A {Bacillus subtilis} PDB: 2w1t_B 2ro5_A
Probab=54.22 E-value=10 Score=33.70 Aligned_cols=41 Identities=27% Similarity=0.379 Sum_probs=33.3
Q ss_pred eeCCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCC
Q 047222 73 IADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHT 116 (342)
Q Consensus 73 ~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s 116 (342)
+...|.|.+|.=+.+.|+|++||.|.|.. -+.|. +.|+|.+
T Consensus 10 V~~kGqItIPkeiR~~LgI~~GD~l~~~~--~~dG~-Iil~~~~ 50 (178)
T 2w1t_A 10 IDDLGRVVIPKEIRRTLRIREGDPLEIFV--DRDGD-VILKKYS 50 (178)
T ss_dssp CCTTSEEECCHHHHHHTTCCTTCEEEEEE--CTTSC-EEEEECC
T ss_pred ECCCceEEEcHHHHHHcCcCCCCEEEEEE--eCCCE-EEEEECC
Confidence 34679999999999999999999998764 34454 7788874
No 27
>1wlf_A PEX1, peroxisome biogenesis factor 1; N-terminal domain, protein transport; 2.05A {Mus musculus} SCOP: b.52.2.3 d.31.1.1
Probab=53.96 E-value=4.8 Score=35.34 Aligned_cols=71 Identities=18% Similarity=0.326 Sum_probs=43.4
Q ss_pred CCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccCeeccCCCEEEEe
Q 047222 75 DEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVP 148 (342)
Q Consensus 75 eEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~LRnystLT~Gd~I~I~ 148 (342)
..|.|-||.-.|+.|++.+||.|.|++.+ +..|+-..... ++-|...-.--+-..+|+-.-|..||.+.|.
T Consensus 23 ~~~~vrL~~~~~~~L~~~~gd~VeI~g~~--~t~~~~w~~~~-~~~d~~~~~I~Id~~~r~n~gv~~Gd~V~V~ 93 (179)
T 1wlf_A 23 RDCFLHLPRRLVAQLHLLQNQAIEVASDH--QPTYLSWVEGR-HFNDQSENVAEINRQVGQKLGLSSGDQVFLR 93 (179)
T ss_dssp SSSCEEECHHHHHHTTCCTTCCEEEESSS--CCEEECEEECS-SCC---CCEEEEEHHHHHHTTCCTTCEEEEE
T ss_pred CCcEEECCHHHHHHcCCCCCcEEEEEeCC--eeEEEEEECCC-CcccCCCCEEEECHHHHhHCCCCCCCEEEEE
Confidence 45889999999999999999999999753 22233222221 1111110001122355555568999999887
No 28
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=49.49 E-value=14 Score=31.96 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=24.0
Q ss_pred EEEeeeeeCCCcEeccHHHHHHcCCCCCCEEEEEEe
Q 047222 67 CGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNA 102 (342)
Q Consensus 67 ~GVLEF~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~ 102 (342)
-.|+|++|+.. +-+.|+|+.||.|.|+-.
T Consensus 105 ~~vlEIIAp~~-------LR~~L~LkDGD~V~I~v~ 133 (146)
T 2oyn_A 105 SEIIEIIAPMK-------LREQFNLKDGDVIKILIK 133 (146)
T ss_dssp EEEEEEECSSC-------HHHHHTCCTTCEEEEEEE
T ss_pred CCEEEEEcCcc-------hhhhcCCCCCCEEEEEEe
Confidence 56888888764 889999999999998753
No 29
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=48.50 E-value=52 Score=28.42 Aligned_cols=92 Identities=12% Similarity=0.110 Sum_probs=54.7
Q ss_pred eeeeeCCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccC---eeccCCCEEE
Q 047222 70 MEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSY---SCLTTGDTIM 146 (342)
Q Consensus 70 LEF~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~LRny---stLT~Gd~I~ 146 (342)
++|.-..|. ++|.|--.=++++.|+.+.|... |.- +|- -.|+..|.+--+..| ..|..|+++.
T Consensus 32 ~~f~lG~g~-vipG~eeaL~Gm~~Ge~~~v~ip--pe~----------aYG-~~~~~~v~~v~~~~f~~~~~~~~G~~~~ 97 (171)
T 2k8i_A 32 LDYLHGHGS-LISGLETALEGHEVGDKFDVAVG--AND----------AYG-QYDENLVQRVPKDVFMGVDELQVGMRFL 97 (171)
T ss_dssp EEEETTSCS-SCSHHHHHHTTCCTTCEEEEEEE--TTT----------SSC-CCCTTSEEEEEGGGGTTSSCCCTTCEEE
T ss_pred EEEEECCCC-cchHHHHHHcCCCCCCEEEEEEC--cHH----------hcC-CCChhhEEEeeHHHCCcccCccCCcEEE
Confidence 455554444 58999999999999998887643 110 111 112222222222223 2588999999
Q ss_pred EeeCCEEEEEEEEeecCCCeeEEEecceeEeecCCCC
Q 047222 147 VPYNNKKYYINVVETKPSTAVSIIETDCEVDFIPPLD 183 (342)
Q Consensus 147 I~yn~~~y~l~V~e~kP~~aVsIIdTDleVDf~pPld 183 (342)
+.-.+..+...|+++ -+..+.|||.-||-
T Consensus 98 ~~~~~G~~~~~V~~v--------~~~~V~vD~NHPLA 126 (171)
T 2k8i_A 98 AETDQGPVPVEITAV--------EDDHVVVDGNHMLA 126 (171)
T ss_dssp EEETTEEEEEEEEEE--------CSSEEEEESCCSSC
T ss_pred EECCCCcEEEEEEEE--------cCCEEEEeCCCCCC
Confidence 887665455555554 45566788877763
No 30
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=46.17 E-value=24 Score=27.43 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHHHHHcCCCCCCEEEEEEeecCCcceEEEe
Q 047222 83 YWMMENMLLQEGDIVEVKNASLAKGSYVKLQ 113 (342)
Q Consensus 83 ~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLq 113 (342)
.-+.+.+|+++||.|.|..-+---|.||..+
T Consensus 43 DPvar~~G~k~GdVvkI~R~S~taG~~v~YR 73 (77)
T 1eik_A 43 DPVAKAIGAKRGDIVKIIRKSPTAEEFVTYR 73 (77)
T ss_dssp SHHHHGGGCCTTCEEEEEEEETTTEEEEEEE
T ss_pred CHhhHHhCCCCCCEEEEEECCCCCCCcEEEE
Confidence 4589999999999999999998899988755
No 31
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=41.72 E-value=23 Score=27.64 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=26.1
Q ss_pred HHHHHcCCCCCCEEEEEEeecCCcceEEEe
Q 047222 84 WMMENMLLQEGDIVEVKNASLAKGSYVKLQ 113 (342)
Q Consensus 84 WMm~~L~l~~gd~V~i~~~~LPkGt~vkLq 113 (342)
-+++.+|+++||.|+|...+---|.||..+
T Consensus 42 Pvar~~G~k~GdVvkI~R~S~taG~~v~YR 71 (78)
T 1hmj_A 42 PVIQEIGAKEGDVVRVIRKSPTAGVSIAYR 71 (78)
T ss_pred HhhHHhCCCCCCEEEEEECCCCCCCcEEEE
Confidence 478999999999999998888888888654
No 32
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=41.47 E-value=14 Score=38.99 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=58.3
Q ss_pred CCCCCeEEEEEeCCCCCEEEEEEeeeeeCCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcH
Q 047222 47 HIEYPMLFELSNTSAGRVTYCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPK 126 (342)
Q Consensus 47 ~i~~PmlF~L~n~~~~r~th~GVLEF~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpK 126 (342)
+...|..+.+...... +-|.|.|..-.|+.|+|.+||.|.|+..+- +.+.++..|.... ..-.
T Consensus 19 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~ 81 (806)
T 1ypw_A 19 QKNRPNRLIVDEAINE------------DNSVVSLSQPKMDELQLFRGDTVLLKGKKR-REAVCIVLSDDTC----SDEK 81 (806)
T ss_dssp CCCCTTEEEEECCSSC------------CSSCEEECHHHHHHHTCCTTCEEEEEETTT-EECCEEEEECSSS----CTTE
T ss_pred ccCCCceEEEccCcCC------------cCCEEEECHHHHHHcCCCCCCEEEEecCcc-CcEEEEEecCCCC----CCCe
Confidence 4567777777653321 338999999999999999999999998632 2355555554211 1112
Q ss_pred HHHHHhhccCeeccCCCEEEEee
Q 047222 127 AVLETTLRSYSCLTTGDTIMVPY 149 (342)
Q Consensus 127 avLE~~LRnystLT~Gd~I~I~y 149 (342)
..+-...|+-..+..||+|.|.-
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~ 104 (806)
T 1ypw_A 82 IRMNRVVRNNLRVRLGDVISIQP 104 (806)
T ss_dssp EECCHHHHTTTTCCTTCEEEEEE
T ss_pred EEecHHHHhhcCCCCCCEEEEEE
Confidence 22445667778899999999863
No 33
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=41.25 E-value=9 Score=31.10 Aligned_cols=15 Identities=40% Similarity=0.753 Sum_probs=13.1
Q ss_pred CccccceeeceecCC
Q 047222 239 AKFSPFTGSGRCLNG 253 (342)
Q Consensus 239 ~~f~~F~G~G~rLdG 253 (342)
..+.+|.|.|+||.+
T Consensus 80 ~~~~~F~G~G~~LGs 94 (102)
T 1ss6_A 80 GAFKAFTGEGQKLGS 94 (102)
T ss_dssp SSSTTSCSSSSSGGG
T ss_pred CcccCCcccCeECCC
Confidence 368999999999985
No 34
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=40.35 E-value=22 Score=29.78 Aligned_cols=43 Identities=23% Similarity=0.263 Sum_probs=32.4
Q ss_pred EEEEEEeeee-------e--------CCCcEeccHHHHHHcCCCCCCEEEEEEeecCCc
Q 047222 64 VTYCGVMEFI-------A--------DEGLIYLPYWMMENMLLQEGDIVEVKNASLAKG 107 (342)
Q Consensus 64 ~th~GVLEF~-------A--------eEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkG 107 (342)
....||||.. - .+.-||+|..+++..+|..||.|...-. -|+.
T Consensus 49 ~~~~Gvlei~~dG~GFlr~~~~~y~~~~~DiyVs~~~irrf~lr~GD~V~g~vr-~~~~ 106 (130)
T 1a62_A 49 IFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR-PPKE 106 (130)
T ss_dssp EEEEEEEEECTTSCEEEECGGGTTCCCTTCEEECHHHHHHTTCCTTCEEEEEEE-CCCT
T ss_pred EEEEEEEEEcCCCeEEEecCCcCCCCCCCCEEECHHHHhHhCCCCCCEEEEEEe-CCCC
Confidence 4567888842 1 3457999999999999999999988743 4443
No 35
>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus}
Probab=37.45 E-value=24 Score=29.53 Aligned_cols=29 Identities=28% Similarity=0.148 Sum_probs=25.5
Q ss_pred CCCcEeccHHHHHHcCCCCCCEEEEEEee
Q 047222 75 DEGLIYLPYWMMENMLLQEGDIVEVKNAS 103 (342)
Q Consensus 75 eEG~i~LP~WMm~~L~l~~gd~V~i~~~~ 103 (342)
++..|.|-.=-++.|||++||.|+|.+..
T Consensus 51 ~~~~v~inp~dA~~lGI~dGd~V~V~s~~ 79 (146)
T 2ki8_A 51 AVNYAEINEEDWNALGLQEGDRVKVKTEF 79 (146)
T ss_dssp SSSEEEECHHHHHHHTCCTTCEEEEECSS
T ss_pred CCCEEEECHHHHHHcCCCCCCEEEEEeCC
Confidence 46789999999999999999999998753
No 36
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=32.03 E-value=62 Score=23.91 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=37.0
Q ss_pred cCCCCCCEEEEEEe-ecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccCeeccCCCEEEEe
Q 047222 89 MLLQEGDIVEVKNA-SLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVP 148 (342)
Q Consensus 89 L~l~~gd~V~i~~~-~LPkGt~vkLqP~s~~FldisnpKavLE~~LRnystLT~Gd~I~I~ 148 (342)
|.++.|+.+.-+-. ..+.|-||.|.+.-..|+-+++... ..+..+..||.|.+.
T Consensus 1 m~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~------~~~~~~~~Gd~V~v~ 55 (80)
T 2k52_A 1 MDVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMIS------LRLENLNVGDEIIVQ 55 (80)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSS------CCGGGCCTTCEEEEE
T ss_pred CCCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCc------ccceeeCCCCEEEEE
Confidence 35678988876644 4789999999876666775554310 011578999998864
No 37
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=31.81 E-value=13 Score=32.55 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=25.4
Q ss_pred ccHHHHHHcCCCCCCEEEEEEeecCCcceEEEe
Q 047222 81 LPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQ 113 (342)
Q Consensus 81 LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLq 113 (342)
+.---|+.|.|+.||.|+|. .+||.+++-.-
T Consensus 54 V~~~~vk~LeLRiGD~VKVd--~vpK~~hiVvG 84 (153)
T 2fhd_A 54 VNSNQIKRFFLKKGDVVQST--RLGKIKHTVVK 84 (153)
T ss_dssp EETTSEEESCCCTTCEEEET--TSTTCCEEEEE
T ss_pred cChhhceeeeeecCCEEEEC--CCCCccEEEEE
Confidence 33345678999999999999 99999998653
No 38
>1yle_A Arginine N-succinyltransferase, alpha chain; structural genomics, acyltransferase, arginine metabolism, protein structure initiative; 1.70A {Pseudomonas aeruginosa} SCOP: d.108.1.8
Probab=30.72 E-value=47 Score=32.28 Aligned_cols=45 Identities=20% Similarity=0.186 Sum_probs=33.7
Q ss_pred EEEEEeCCC--CCEEEEEEeeeeeCCCc-EeccHHHHHHcCCCCCCEEEEE
Q 047222 53 LFELSNTSA--GRVTYCGVMEFIADEGL-IYLPYWMMENMLLQEGDIVEVK 100 (342)
Q Consensus 53 lF~L~n~~~--~r~th~GVLEF~AeEG~-i~LP~WMm~~L~l~~gd~V~i~ 100 (342)
.+-|.|..- =|.| +.+.....+. +.|+.-+++.|++++||.|++-
T Consensus 291 ~~lv~n~~~~~FRa~---~~~~~~~~~~~~~l~~~~a~aL~v~~Gd~vr~~ 338 (342)
T 1yle_A 291 PYLVTNGQLQDFRAV---VLDLDWAPGKPVALSVEAAEALGVGEGASVRLV 338 (342)
T ss_dssp EEEEECCCSTTCCEE---EEEECCCTTSCEEECHHHHHHHTCCTTCEEEEE
T ss_pred eEEEECCCccCeeEE---EeccccCCCCeEecCHHHHHhcCCCCCCEEEEE
Confidence 366777543 2444 4455666677 8999999999999999999974
No 39
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=29.82 E-value=44 Score=25.52 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=21.7
Q ss_pred CcEeccHHHHHHcCCCCCCEEEEEE
Q 047222 77 GLIYLPYWMMENMLLQEGDIVEVKN 101 (342)
Q Consensus 77 G~i~LP~WMm~~L~l~~gd~V~i~~ 101 (342)
=.+.+|.=+.+.|+|++||.+.++.
T Consensus 25 yYInIPaeI~kaLgIk~gD~fel~v 49 (68)
T 3o27_A 25 FYLLIPKDIAEALDIKPDDTFILNM 49 (68)
T ss_dssp EEEEECHHHHHHTTCCTTCCEEEEE
T ss_pred EEEeCcHHHHHHhCCCCCCEEEEEE
Confidence 4688999999999999999877664
No 40
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=29.31 E-value=64 Score=25.27 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=25.3
Q ss_pred HHHHHHcCCCCCCEEEEEEeecCCcceEEEe
Q 047222 83 YWMMENMLLQEGDIVEVKNASLAKGSYVKLQ 113 (342)
Q Consensus 83 ~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLq 113 (342)
.-+.+.+|+++||+|+|.-.+---|.++-.+
T Consensus 49 DPva~~~g~k~GdVvkI~R~S~tag~~~~YR 79 (84)
T 4ayb_H 49 DPVARSINAKPGDIIRIIRKSQLYGEVVSYR 79 (84)
T ss_dssp SHHHHHHTCCTTCEEEEEEEETTTEEEEEEE
T ss_pred CHhHHhhCCCCCCEEEEEEcCCCCCccEEEE
Confidence 3488899999999999998887778777543
No 41
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=28.70 E-value=52 Score=29.61 Aligned_cols=48 Identities=23% Similarity=0.378 Sum_probs=40.6
Q ss_pred ecCCcceEEEeeCCcCcCCc-CCcHHHHHHhhccCeeccCCCEEEEeeC
Q 047222 103 SLAKGSYVKLQPHTKDFLDI-SNPKAVLETTLRSYSCLTTGDTIMVPYN 150 (342)
Q Consensus 103 ~LPkGt~vkLqP~s~~Fldi-snpKavLE~~LRnystLT~Gd~I~I~yn 150 (342)
.-+.||-|.|.|--.-|... .---..|.+.||.++-|..|=.|.+...
T Consensus 160 ~~~~GT~V~F~Pd~~~F~~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 208 (220)
T 4duh_A 160 TEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDK 208 (220)
T ss_dssp CSCCEEEEEEEECTTTCCSSCSCCHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred cCCCCcEEEEEECHHHhCCcccCCHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 46899999999998889876 5566789999999999999988887754
No 42
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=28.03 E-value=24 Score=28.95 Aligned_cols=31 Identities=23% Similarity=0.310 Sum_probs=22.3
Q ss_pred HHhhc--cCeeccCCCEEEEeeCCEEEEEEEEeec
Q 047222 130 ETTLR--SYSCLTTGDTIMVPYNNKKYYINVVETK 162 (342)
Q Consensus 130 E~~LR--nystLT~Gd~I~I~yn~~~y~l~V~e~k 162 (342)
|-+|. +|..+.+||+|.+ ++......|.+++
T Consensus 23 EiRlnd~k~~~ikvGD~I~f--~~~~l~~~V~~v~ 55 (109)
T 2z0t_A 23 EGRLYDEKRRQIKPGDIIIF--EGGKLKVKVKGIR 55 (109)
T ss_dssp EEEECCTTGGGCCTTCEEEE--GGGTEEEEEEEEE
T ss_pred EEEecchhhhcCCCCCEEEE--CCCEEEEEEEEEE
Confidence 44444 6889999999999 4556667777654
No 43
>1ss6_A P47, NSFL1 cofactor P47, P47 protein, P97; , SEP, signaling protein; NMR {Homo sapiens} SCOP: d.245.1.1
Probab=28.01 E-value=23 Score=28.71 Aligned_cols=13 Identities=46% Similarity=0.705 Sum_probs=11.6
Q ss_pred CCccccccccccc
Q 047222 328 PKFQAFTGKKYSL 340 (342)
Q Consensus 328 ~~f~aF~G~g~sL 340 (342)
.++++|+|+|++|
T Consensus 80 ~~~~~F~G~G~~L 92 (102)
T 1ss6_A 80 GAFKAFTGEGQKL 92 (102)
T ss_dssp SSSTTSCSSSSSG
T ss_pred CcccCCcccCeEC
Confidence 4699999999998
No 44
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=27.64 E-value=58 Score=28.73 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=38.8
Q ss_pred cCCcceEEEeeCCcCcC-CcCCcHHHHHHhhccCeeccCCCEEEEeeC
Q 047222 104 LAKGSYVKLQPHTKDFL-DISNPKAVLETTLRSYSCLTTGDTIMVPYN 150 (342)
Q Consensus 104 LPkGt~vkLqP~s~~Fl-disnpKavLE~~LRnystLT~Gd~I~I~yn 150 (342)
-+.||-|.|+|--.-|+ ...---..|.+.||.++.|..|=.|.++..
T Consensus 134 ~~~GT~V~F~Pd~~iF~~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 181 (198)
T 3ttz_A 134 DKTGTVIRFKADGEIFTETTVYNYETLQQRIRELAFLNKGIQITLRDE 181 (198)
T ss_dssp SCCEEEEEEEECTTTCCSCCCCCHHHHHHHHHHHHHHSTTCEEEEEEC
T ss_pred CCCCcEEEEEECHHHhccCCccCHHHHHHHHHHHhhcCCCCEEEEEee
Confidence 48999999999988894 444456679999999999999988887754
No 45
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=27.37 E-value=90 Score=31.53 Aligned_cols=84 Identities=14% Similarity=0.182 Sum_probs=57.1
Q ss_pred EEEEEeCCCCCEEEEEEeeeeeCCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHh
Q 047222 53 LFELSNTSAGRVTYCGVMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETT 132 (342)
Q Consensus 53 lF~L~n~~~~r~th~GVLEF~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~ 132 (342)
.|+.-.+.+++.++||-.-+....-..-|=..|.+.||+.++..+++--..-| ++.-. |.|++.-|+.+
T Consensus 134 FlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~-~~ie~----------l~~~~~t~~~~ 202 (530)
T 2ylm_A 134 FLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKP-NLTER----------IQDYDVSLDKA 202 (530)
T ss_dssp EEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEET-TEEEE----------CCCSSSBHHHH
T ss_pred EEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCC-CceeE----------cccccccHHHH
Confidence 34566677788999999999887666678888999999999877766322222 22222 23344445555
Q ss_pred hccCeeccCCCEEEEeeC
Q 047222 133 LRSYSCLTTGDTIMVPYN 150 (342)
Q Consensus 133 LRnystLT~Gd~I~I~yn 150 (342)
| ..|..||+|.+.-.
T Consensus 203 ~---~eL~~GdII~fQ~~ 217 (530)
T 2ylm_A 203 L---DELMDGDIIVFQKD 217 (530)
T ss_dssp S---TTCCTTEEEEEEEC
T ss_pred H---hcccCCCEEEEEec
Confidence 4 56888999988753
No 46
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=27.15 E-value=66 Score=26.85 Aligned_cols=25 Identities=28% Similarity=0.523 Sum_probs=21.1
Q ss_pred eeccCCCEEEEeeCCEEEEEEEEee
Q 047222 137 SCLTTGDTIMVPYNNKKYYINVVET 161 (342)
Q Consensus 137 stLT~Gd~I~I~yn~~~y~l~V~e~ 161 (342)
.-|..||.|.|...++.|...|.++
T Consensus 74 ~~l~~GD~i~v~~~~~~~~Y~V~~~ 98 (147)
T 2ln7_A 74 GQLKEKDTLVLEYDNKTYTYEIQKI 98 (147)
T ss_dssp HHSSTTCEEEEEETTEEEEEEEEEE
T ss_pred hcccCCCEEEEEECCcEEEEEEEeE
Confidence 3478999999999999988888764
No 47
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=26.24 E-value=19 Score=29.59 Aligned_cols=32 Identities=31% Similarity=0.323 Sum_probs=25.4
Q ss_pred ccHHHHHHcCCCCCCEEEEEEeecCCcceEEE
Q 047222 81 LPYWMMENMLLQEGDIVEVKNASLAKGSYVKL 112 (342)
Q Consensus 81 LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkL 112 (342)
|=..||+.|.|.+.|-|.|....|++|+-|.+
T Consensus 17 ~~~~~m~~I~i~p~DNVaVAl~~L~aG~~v~~ 48 (105)
T 3k3s_A 17 LYFQGMQYIKIHALDNVAVALADLAEGTEVSV 48 (105)
T ss_dssp ----CCSEECCSTTCSEEEESSCBCTTCEEEE
T ss_pred hhhhcCCEEEcCCCCCEEEecCccCCCCEEee
Confidence 44579999999999999999889999998754
No 48
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=25.16 E-value=4.1 Score=31.59 Aligned_cols=17 Identities=47% Similarity=0.653 Sum_probs=14.4
Q ss_pred HHHHHHcCCCCCCEEEE
Q 047222 83 YWMMENMLLQEGDIVEV 99 (342)
Q Consensus 83 ~WMm~~L~l~~gd~V~i 99 (342)
.=+++.|||.+||+|+|
T Consensus 41 ~~~Lr~LGi~eGDIIrV 57 (72)
T 3idw_A 41 NSMLRTLGLREGDIVRV 57 (72)
T ss_dssp HHHHHHTTCCHHHHHHH
T ss_pred HHHHHHcCCchhhHHHH
Confidence 34899999999999875
No 49
>4dni_A Fusion protein of RNA-editing complex proteins MP MP18; krepa3, krepa6, editosome, protein/RNA binding, protein BIND binding protein; 2.55A {Trypanosoma brucei}
Probab=24.50 E-value=50 Score=30.78 Aligned_cols=56 Identities=21% Similarity=0.417 Sum_probs=41.8
Q ss_pred CcCcCCcCCcHHHHHHhhccCeeccCCCEEEEe-------e----CCEEEEEEEEeecCC-CeeEEEecc
Q 047222 116 TKDFLDISNPKAVLETTLRSYSCLTTGDTIMVP-------Y----NNKKYYINVVETKPS-TAVSIIETD 173 (342)
Q Consensus 116 s~~FldisnpKavLE~~LRnystLT~Gd~I~I~-------y----n~~~y~l~V~e~kP~-~aVsIIdTD 173 (342)
.++|+++.=|...|=..+.+| |.+|+.|.|. | .++.|.+.|+.+.|- ..|.+++.|
T Consensus 190 ~Tdw~~Vv~wgk~~~AEi~~~--L~KG~~V~VeGrL~tr~~~D~~G~kr~~~~vI~V~~~~g~v~~l~~~ 257 (257)
T 4dni_A 190 EKDHHTIRCFGELFSAEVKQK--VKEGNVVCVNGRLRLSPQLEPSCNKHFYFPYIQVQPPHGQVAVIHGD 257 (257)
T ss_dssp EEEEEEEEEESHHHHHHHHHH--CCTTCEEEEEEEEEEEEEECSSSSCEEEEEEEEECTTTCEEEECCCC
T ss_pred ceEEEEEEEECCccHHHHHhh--CCCCCEEEEEEEEEeeeEEcCCCCEEEEEEEEEEECCCCEEEEecCC
Confidence 467888888877631125666 9999999995 3 347899999999864 778887765
No 50
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=23.67 E-value=64 Score=29.22 Aligned_cols=47 Identities=15% Similarity=0.154 Sum_probs=39.4
Q ss_pred cCCcceEEEeeCCcCcCCcCCcHHHHHHhhccCeeccCCCEEEEeeC
Q 047222 104 LAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYSCLTTGDTIMVPYN 150 (342)
Q Consensus 104 LPkGt~vkLqP~s~~FldisnpKavLE~~LRnystLT~Gd~I~I~yn 150 (342)
-+.||-|+|.|--.-|-...--...|.+.||.++.|..|=.|.+...
T Consensus 168 ~~~GT~V~F~PD~~iF~~~~~~~~~l~~rlrelA~ln~gv~i~l~de 214 (226)
T 4emv_A 168 SKTGTKVTFMPDATIFSTTDFKYNTISERLNESAFLLKNVTLSLTDK 214 (226)
T ss_dssp TCCEEEEEEEECTTTCSCCCCCHHHHHHHHHHHHHHHCSCEEEEEET
T ss_pred CCCCeEEEEEECHHHcCCCCcCHHHHHHHHHHHhhcCCCCEEEEEec
Confidence 57899999999888886555557789999999999999988877654
No 51
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=23.36 E-value=2e+02 Score=21.68 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=24.6
Q ss_pred eccCCCEEEEee--CCEEEEEEEEeecCCCee
Q 047222 138 CLTTGDTIMVPY--NNKKYYINVVETKPSTAV 167 (342)
Q Consensus 138 tLT~Gd~I~I~y--n~~~y~l~V~e~kP~~aV 167 (342)
.+.+||.....| +++-|.-.|+++.+...+
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~ 58 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLENGNL 58 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTTSCE
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeE
Confidence 578999999988 789999999998754333
No 52
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=22.95 E-value=86 Score=28.07 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=31.0
Q ss_pred cCeeccCCCEEEEeeCC--EEEEEEEEeecCCCeeEEEec--ceeEee
Q 047222 135 SYSCLTTGDTIMVPYNN--KKYYINVVETKPSTAVSIIET--DCEVDF 178 (342)
Q Consensus 135 nystLT~Gd~I~I~yn~--~~y~l~V~e~kP~~aVsIIdT--DleVDf 178 (342)
.+..+..||+|.+.+.. ..+.++-+---|.+.|+|.+- -+-|+=
T Consensus 46 ~~~~~~rGDIvvf~~p~~~~~~~iKRViglpGD~v~i~~~~~~l~ING 93 (248)
T 1b12_A 46 ETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDPVSKELTIQP 93 (248)
T ss_dssp EECCCCTTCEEEEECTTCTTSEEEEEEEECTTCEEEEETTTTEEEEET
T ss_pred ccCCCCCCcEEEEEeCCCCCceEEEEEEeeCCCEEEEEcCceEEEECC
Confidence 44568899999999852 345555444469999999988 555553
No 53
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=20.72 E-value=1.9e+02 Score=26.40 Aligned_cols=64 Identities=20% Similarity=0.280 Sum_probs=46.8
Q ss_pred EEEeeCCcCcCCcCC--cHHHHHHhhccCe-----eccCCCEEEEeeCCEEEEEEEEeecCCCeeEEEecc
Q 047222 110 VKLQPHTKDFLDISN--PKAVLETTLRSYS-----CLTTGDTIMVPYNNKKYYINVVETKPSTAVSIIETD 173 (342)
Q Consensus 110 vkLqP~s~~Fldisn--pKavLE~~LRnys-----tLT~Gd~I~I~yn~~~y~l~V~e~kP~~aVsIIdTD 173 (342)
+.-+|...-+-||.+ -+.+....|+.|+ -|..|..|.++.|++-+.-.|+++.=+=+.-.-++|
T Consensus 123 ~Vc~~s~~vW~di~~~~~r~FIk~YL~~yP~rpmv~~~~GQ~i~~E~~g~w~~~~V~~vD~SLv~v~f~~d 193 (213)
T 3dlm_A 123 PICRPLKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDD 193 (213)
T ss_dssp EBSSCCSSGGGGCSCHHHHHHHHHHHHHTTCCCCCCCCTTCEEEEEETTEEEEEEEEEEETTEEEEEETTT
T ss_pred EEEEcccchhhhcCcchhHHHHHHHHHhCCCCceEEcCCCCEEEEEecCcEEEEEEEEEcceeEEEEEcCC
Confidence 344555444557876 3999999999776 389999999999999999999997644444333444
No 54
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=20.66 E-value=1.2e+02 Score=22.88 Aligned_cols=22 Identities=14% Similarity=0.409 Sum_probs=18.8
Q ss_pred ccCCCEEEEeeCCEEEEEEEEe
Q 047222 139 LTTGDTIMVPYNNKKYYINVVE 160 (342)
Q Consensus 139 LT~Gd~I~I~yn~~~y~l~V~e 160 (342)
|--+..|.|.|++..|.|++..
T Consensus 34 l~g~~~v~I~H~G~~Y~LR~Tr 55 (63)
T 2loj_A 34 LGPDGKVIIDHNGQEYLLRKTQ 55 (63)
T ss_dssp STTTCEEEEEETTEEEEEEEET
T ss_pred hCCCCEEEEEeCCeEEEeEEcc
Confidence 4566899999999999999864
No 55
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=20.50 E-value=1.1e+02 Score=25.19 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=20.3
Q ss_pred eccCCCEEEEeeCCEEEEEEEEee
Q 047222 138 CLTTGDTIMVPYNNKKYYINVVET 161 (342)
Q Consensus 138 tLT~Gd~I~I~yn~~~y~l~V~e~ 161 (342)
-|.+||.|.|...++.|...|.++
T Consensus 74 ~l~~Gd~i~v~~~~~~~~Y~V~~~ 97 (145)
T 1t2w_A 74 AAKKGSMVYFKVGNETRKYKMTSI 97 (145)
T ss_dssp GCCTTCEEEEEETTEEEEEEEEEE
T ss_pred hCCCCCEEEEEECCEEEEEEEEEE
Confidence 356999999999999888888765
No 56
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=20.47 E-value=2.3e+02 Score=23.51 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=52.4
Q ss_pred eeeeeCCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccC--eeccCCCEEEE
Q 047222 70 MEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSY--SCLTTGDTIMV 147 (342)
Q Consensus 70 LEF~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~LRny--stLT~Gd~I~I 147 (342)
++|.--.|. ++|.|=-.=++++.|+...|..- .. .+|-+ .|+..|.+-.+..| -.|..|+.+.+
T Consensus 37 ~~f~~G~g~-vipg~e~aL~gm~~Ge~~~v~ip---p~---------~aYG~-~~~~~v~~v~~~~f~~~~~~~G~~~~~ 102 (151)
T 2kr7_A 37 LEFIIGTNQ-IIAGLEKAVLKAQIGEWEEVVIA---PE---------EAYGV-YESSYLQEVPRDQFEGIELEKGMSVFG 102 (151)
T ss_dssp EEEETTCCC-SCHHHHHHHTTCCBTCEEEEEEC---GG---------GTTCS-SCSCEEEEEEGGGGTTSCCCTTCEEEE
T ss_pred EEEEECCCC-ccHHHHHHHcCCCCCCEEEEEEe---cH---------HHcCC-CCcceEEEEcHHHcCCCCCccCCEEEE
Confidence 556555554 58999999999999998886642 11 11211 11111111111222 24778888887
Q ss_pred eeC-CEEEEEEEEeecCCCeeEEEecceeEeecCCC
Q 047222 148 PYN-NKKYYINVVETKPSTAVSIIETDCEVDFIPPL 182 (342)
Q Consensus 148 ~yn-~~~y~l~V~e~kP~~aVsIIdTDleVDf~pPl 182 (342)
.-. +..+...|+++. +..+.|||--||
T Consensus 103 ~~~~G~~~~~~V~~v~--------~~~v~vD~NHPL 130 (151)
T 2kr7_A 103 QTEDNQTIQAIIKDFS--------ATHVMVDYNHPL 130 (151)
T ss_dssp EETTTEEEEEEEEEEC--------SSEEEEEECCTT
T ss_pred ECCCCCEEEEEEEEEC--------CCEEEEECCCcC
Confidence 653 444555566643 455668887776
No 57
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=20.43 E-value=93 Score=27.36 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=23.4
Q ss_pred hhccCeeccCCCEEEEeeCC-------EEEEEEEEeec
Q 047222 132 TLRSYSCLTTGDTIMVPYNN-------KKYYINVVETK 162 (342)
Q Consensus 132 ~LRnystLT~Gd~I~I~yn~-------~~y~l~V~e~k 162 (342)
++-.|.-|.+|+.++|+||- --|...|.+.+
T Consensus 86 t~l~w~~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~~ 123 (161)
T 3db3_A 86 TIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKR 123 (161)
T ss_dssp CBCCGGGCCTTCEEEEEECSSSTTSCCEEEEEEEEEEE
T ss_pred EeccHHHCCcCcEEEEecCCCCccccceeEEEEEeeeh
Confidence 44467789999999999982 36777777653
No 58
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=20.27 E-value=2.6e+02 Score=24.07 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=55.0
Q ss_pred EeeeeeCCCcEeccHHHHHHcCCCCCCEEEEEEeecCCcceEEEeeCCcCcCCcCCcHHHHHHhhccCe---eccCCCEE
Q 047222 69 VMEFIADEGLIYLPYWMMENMLLQEGDIVEVKNASLAKGSYVKLQPHTKDFLDISNPKAVLETTLRSYS---CLTTGDTI 145 (342)
Q Consensus 69 VLEF~AeEG~i~LP~WMm~~L~l~~gd~V~i~~~~LPkGt~vkLqP~s~~FldisnpKavLE~~LRnys---tLT~Gd~I 145 (342)
-++|.--.|. ++|-|--.=++++.|+...|..- | ...|- -.|+..|.+--...|. .|..|+.|
T Consensus 54 P~~f~lG~g~-vipG~eeaL~gm~~Ge~~~v~Ip-----------p-~~AYG-~~~~~lv~~vp~~~f~~~~~~~~G~~~ 119 (169)
T 4dt4_A 54 PALFRLGDAS-LSEGLEQHLLGLKVGDKTTFSLE-----------P-DAAFG-VPSPDLIQYFSRREFMDAGEPEIGAIM 119 (169)
T ss_dssp CEEEETTSSS-SCHHHHHHHTTCCTTCEEEEEEC-----------G-GGTTC-CCCGGGEEEEEGGGGTTTCCCCTTCEE
T ss_pred CEEEEECCCC-ccHHHHHHHcCCCCCCEEEEEEC-----------h-HHhcC-CCChHHEEEeCHHHCCCcCCCCCCcEE
Confidence 3566655555 57999999999999998876542 1 11221 1233333222222332 47788888
Q ss_pred EEeeC-CEEEEEEEEeecCCCeeEEEecceeEeecCCC
Q 047222 146 MVPYN-NKKYYINVVETKPSTAVSIIETDCEVDFIPPL 182 (342)
Q Consensus 146 ~I~yn-~~~y~l~V~e~kP~~aVsIIdTDleVDf~pPl 182 (342)
.+.-. +..+...|+++ -+..+.|||--||
T Consensus 120 ~~~~~~G~~~~~~V~~v--------~~~~V~vD~NHPL 149 (169)
T 4dt4_A 120 LFTAMDGSEMPGVIREI--------NGDSITVDFNHPL 149 (169)
T ss_dssp EEECTTSCEEEEEEEEE--------ETTEEEEECSCTT
T ss_pred EEECCCCCEEEEEEEEE--------cCCEEEEeCCCcc
Confidence 88653 34566666664 3556677887776
Done!