BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047225
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7F9I1|CLPC1_ORYSJ Chaperone protein ClpC1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC1 PE=2 SV=2
Length = 918
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/291 (60%), Positives = 233/291 (80%), Gaps = 12/291 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RARVG+++PNRPI+SF+F+GPTGVGK+ELA ALA YFGS+EAM+R+DMSE+ME+HT
Sbjct: 617 AIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 676
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVG+ GGQLTEAVR RP++V+LFDEIEKAH DV N+MLQ+L+DGR+TD
Sbjct: 677 VSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDS 736
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIAR------------ESILGSDQMERGVAEELRRRFRP 169
KG+TVD KNT++IMTSN+G SVI + E ++++ V EEL++ FRP
Sbjct: 737 KGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDTSYNRIKSLVTEELKQYFRP 796
Query: 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS 229
EFLNR+DE+IVFRQL K+++ EI DIMLKE+++RL+AK+++L VT F+ ++++EGYNPS
Sbjct: 797 EFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKAKDIDLQVTEKFRDRVVDEGYNPS 856
Query: 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYRHRNG 280
YGARPLRRAI RLLED+LAE +L G ++ GDS +D DS G VI+ +G
Sbjct: 857 YGARPLRRAIMRLLEDSLAEKMLAGEVKEGDSAIVDVDSEGKVIVLNGGSG 907
>sp|P31542|CLPAB_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B,
chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1
Length = 923
Score = 374 bits (961), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/292 (60%), Positives = 232/292 (79%), Gaps = 12/292 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RARVG+++PNRPI+SF+F+GPTGVGK+ELA ALA YFGS+EAM+R+DMSE+ME+HT
Sbjct: 621 AIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 680
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVG+ GGQLTEAVR RP++V+LFDEIEKAH DV N+MLQ+L+DGR+TD
Sbjct: 681 VSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDS 740
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIAR------------ESILGSDQMERGVAEELRRRFRP 169
KG+TVD KNT++IMTSN+G SVI + E ++++ V EEL++ FRP
Sbjct: 741 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDLDEKDSSYNRIKSLVTEELKQYFRP 800
Query: 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS 229
EFLNR+DE+IVFRQL K+++ EI DIMLKE++ERL+ K +EL VT F+ ++++EGYNPS
Sbjct: 801 EFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTERFRDRVVDEGYNPS 860
Query: 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYRHRNGS 281
YGARPLRRAI RLLED++AE +L I+ GDSV +D DS GNV + +G+
Sbjct: 861 YGARPLRRAIMRLLEDSMAEKMLANEIKEGDSVIVDVDSDGNVTVLNGSSGT 912
>sp|Q9FI56|CLPC1_ARATH Chaperone protein ClpC1, chloroplastic OS=Arabidopsis thaliana
GN=CLPC1 PE=1 SV=1
Length = 929
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/296 (60%), Positives = 234/296 (79%), Gaps = 12/296 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RARVG+++PNRPI+SF+F+GPTGVGK+ELA ALA YFGS+EAM+R+DMSE+ME+HT
Sbjct: 623 AIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 682
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVG+ GGQLTEAVR RP++V+LFDEIEKAH DV N+MLQ+L+DGR+TD
Sbjct: 683 VSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDS 742
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIAR------------ESILGSDQMERGVAEELRRRFRP 169
KG+TVD KNT++IMTSN+G SVI + E ++++ V EEL++ FRP
Sbjct: 743 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRP 802
Query: 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS 229
EFLNR+DE+IVFRQL K+++ EI DI+LKE++ERL+ K +EL VT FK+++++EGYNPS
Sbjct: 803 EFLNRLDEMIVFRQLTKLEVKEIADILLKEVFERLKKKEIELQVTERFKERVVDEGYNPS 862
Query: 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYRHRNGSMTVC 285
YGARPLRRAI RLLED++AE +L I+ GDSV +D D+ GNV + +G+ T
Sbjct: 863 YGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDAEGNVTVLNGGSGTPTTS 918
>sp|Q2QVG9|CLPC2_ORYSJ Chaperone protein ClpC2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC2 PE=2 SV=2
Length = 919
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 175/291 (60%), Positives = 234/291 (80%), Gaps = 12/291 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
++ RARVG+++PNRPI+SF+F GPTGVGK+ELA ALA YFGS+EAM+R+DMSE+ME+HT
Sbjct: 618 SIRRARVGLKNPNRPIASFIFAGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 677
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVG+ GGQLTEAVR RP++V+LFDEIEKAH DV N+MLQ+L+DGR+TD
Sbjct: 678 VSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDS 737
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIAR------------ESILGSDQMERGVAEELRRRFRP 169
KG+TVD KNT++IMTSN+G SVI + E +++ V EE+++ FRP
Sbjct: 738 KGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDYDEKDSSYSRIKSLVVEEMKQYFRP 797
Query: 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS 229
EFLNR+DE+IVFRQL K+++ EI +IMLKE+++RL+AK+++L VT FK+++++EG+NPS
Sbjct: 798 EFLNRLDEMIVFRQLTKLEVKEIAEIMLKEVFDRLKAKDIDLQVTEKFKERIVDEGFNPS 857
Query: 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYRHRNG 280
YGARPLRRAI RLLED+LAE +L G ++ GDS +D DS G VI+ ++G
Sbjct: 858 YGARPLRRAIMRLLEDSLAEKMLAGEVKEGDSAIVDVDSEGKVIVLNGQSG 908
>sp|P35100|CLPC_PEA Chaperone protein ClpC, chloroplastic OS=Pisum sativum PE=2 SV=1
Length = 922
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/292 (60%), Positives = 232/292 (79%), Gaps = 12/292 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RARVG+++PNRPI+SF+F+GPTGVGK+ELA ALA YFGS+EAM+R+DMSE+ME+HT
Sbjct: 621 AIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 680
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVG+ GGQLTEAVR RP++V+LFDEIEKAH DV N+MLQ+L+DGR+TD
Sbjct: 681 VSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDS 740
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIAR------------ESILGSDQMERGVAEELRRRFRP 169
KG+TVD KNT++IMTSN+G SVI + E ++++ V EEL++ FRP
Sbjct: 741 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRP 800
Query: 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS 229
EFLNR+DE+IVFRQL K+++ EI DIMLKE+++RL+ K +EL VT F+ ++++EGYNPS
Sbjct: 801 EFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTERFRDRVVDEGYNPS 860
Query: 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYRHRNGS 281
YGARPLRRAI RLLED++AE +L I+ GDSV +D DS G VI+ +G+
Sbjct: 861 YGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGKVIVLNGSSGT 912
>sp|P31541|CLPAA_SOLLC ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A,
chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1
Length = 926
Score = 370 bits (949), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/297 (59%), Positives = 233/297 (78%), Gaps = 12/297 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RARVG+++PNRPI+SF+F+GPTGVGK+ELA +LA YFGS+EAM+R+DMSE+ME+HT
Sbjct: 624 AIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHT 683
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVG+ GGQLTEAVR RP++V+LFDEIEKAH DV N+MLQ+L+DGR+TD
Sbjct: 684 VSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDS 743
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIAR------------ESILGSDQMERGVAEELRRRFRP 169
KG+TVD KNT++IMTSN+G SVI + E ++++ V EEL++ FRP
Sbjct: 744 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDFDEKDSSYNRIKSLVTEELKQYFRP 803
Query: 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS 229
EFLNR+ E+IVFRQL K+++ EI DIMLKE++ RL+ K +EL VT F+ ++++EGYNPS
Sbjct: 804 EFLNRLSEMIVFRQLTKLEVKEIADIMLKEVFVRLKNKEIELQVTERFRDRVVDEGYNPS 863
Query: 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYRHRNGSMTVCA 286
YGARPLRRAI RLLED++AE +L G I+ GDSV +D DS GNV + +G+ + A
Sbjct: 864 YGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIVDVDSDGNVTVLNGTSGAPSDSA 920
>sp|Q9SXJ7|CLPC2_ARATH Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana
GN=CLPC2 PE=2 SV=1
Length = 952
Score = 366 bits (940), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/291 (59%), Positives = 231/291 (79%), Gaps = 12/291 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RARVG+++PNRPI+SF+F+GPTGVGK+ELA ALA YFGS+EAM+R+DMSE+ME+HT
Sbjct: 644 AIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHT 703
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVG+ GGQLTEAVR RP++++LFDEIEKAH DV N+MLQ+L+DGR+TD
Sbjct: 704 VSKLIGSPPGYVGYTEGGQLTEAVRRRPYTLVLFDEIEKAHPDVFNMMLQILEDGRLTDS 763
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIAR------------ESILGSDQMERGVAEELRRRFRP 169
KG+TVD KNT++IMTSN+G SVI + E ++++ V EEL++ FRP
Sbjct: 764 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDHDEKDSSYNRIKSLVTEELKQYFRP 823
Query: 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS 229
EFLNR+DE+IVFRQL K+++ EI DIMLKE+ RLE K +EL VT FK+++++EG++PS
Sbjct: 824 EFLNRLDEMIVFRQLTKLEVKEIADIMLKEVVARLEVKEIELQVTERFKERVVDEGFDPS 883
Query: 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYRHRNG 280
YGARPLRRAI RLLED++AE +L+ I+ GDSV +D D+ G+V++ G
Sbjct: 884 YGARPLRRAIMRLLEDSMAEKMLSRDIKEGDSVIVDVDAEGSVVVLSGTTG 934
>sp|Q9TM05|CLPC_CYACA ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Cyanidium caldarium GN=clpC PE=3 SV=1
Length = 854
Score = 357 bits (917), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 173/283 (61%), Positives = 221/283 (78%), Gaps = 12/283 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RARVG+++PNRPI+SF+F+GPTGVGKTEL A+A +FGS+EAMVR+DMSEYME+HT
Sbjct: 557 AIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDMSEYMERHT 616
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVG+ GGQLTEAVR RP++V+LFDEIEKAH DV N++LQ+L+DGR+TD
Sbjct: 617 VSKLIGSPPGYVGYNEGGQLTEAVRKRPYTVVLFDEIEKAHPDVFNLLLQILEDGRLTDS 676
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIAR----------ESI--LGSDQMERGVAEELRRRFRP 169
KG+T+D KNT++IMTSNIG VI + E+I L +M V EEL++ FRP
Sbjct: 677 KGRTIDFKNTLLIMTSNIGSKVIEKKGGGLGFELEENIEELQYSRMRNLVNEELKQYFRP 736
Query: 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS 229
EFLNR+DE+IVFRQL K ++ +I IML+EI+ER++ + + L VT FK LIEEGYNPS
Sbjct: 737 EFLNRVDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTERFKNLLIEEGYNPS 796
Query: 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNV 272
YGARPLRRA+ RLLED+LAE +L+G I+ GD+ +D D V
Sbjct: 797 YGARPLRRALVRLLEDSLAEEVLSGKIKEGDNAMIDVDENKQV 839
>sp|Q1XDF4|CLPC_PORYE ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra yezoensis GN=clpC PE=3 SV=1
Length = 821
Score = 355 bits (910), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 167/283 (59%), Positives = 221/283 (78%), Gaps = 12/283 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RARVG+++PNRPI+SF+F+GPTGVGKTEL ALA +FGS+ +M+R+DMSEYME+HT
Sbjct: 527 AIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHT 586
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVG+ GG LTEAVR +P++VILFDEIEKAH D+ N++LQ+L+DGR+TD
Sbjct: 587 VSKLIGSPPGYVGYSEGGYLTEAVRKKPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDA 646
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARES-----ILGSDQMERG-------VAEELRRRFRP 169
KG+T+D KNT++IMTSNIG VI + L DQ E V EEL++ FRP
Sbjct: 647 KGRTIDFKNTLLIMTSNIGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRP 706
Query: 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS 229
EFLNR+DE+IVFRQL K ++ EI ++ML E++ R++ ++++L VT FK++L+EEGYNPS
Sbjct: 707 EFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKQRLVEEGYNPS 766
Query: 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNV 272
YGARPLRRA+ RLLED+LAE +L+G I+ GDS +D + G V
Sbjct: 767 YGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSAVVDVTNEGEV 809
>sp|P46523|CLPA_BRANA ATP-dependent Clp protease ATP-binding subunit clpA homolog,
chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2
SV=1
Length = 874
Score = 354 bits (908), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 170/295 (57%), Positives = 228/295 (77%), Gaps = 11/295 (3%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RARVG+++PNRPI+SF+F GPTGVGK+ELA ALA YFG +EAM+R+DMSE+ME+HT
Sbjct: 569 AIRRARVGLKNPNRPIASFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHT 628
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVG+ QLTEAVR RP++V+LFDEIEKAH DV N+MLQ+L+DGR+T+
Sbjct: 629 VSKLIGSPPGYVGYTEPPQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTNS 688
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIAR-----------ESILGSDQMERGVAEELRRRFRPE 170
KG+TVD KNT++IMTSN+G SVI + E ++++ V +EL++ FRPE
Sbjct: 689 KGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYEKDSSYNRIKSLVTQELKQYFRPE 748
Query: 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSY 230
FLNR+DE+I+FRQL K+++ EI DI+L+E++ERL+ K +EL VT FK+++++EGYNPSY
Sbjct: 749 FLNRLDEMILFRQLTKLEVKEIADILLQELFERLKKKEVELQVTERFKERVVDEGYNPSY 808
Query: 231 GARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYRHRNGSMTVC 285
GARPLRRAI RLLED++ E +L I+ GDSV +D DS G V + +G+ T
Sbjct: 809 GARPLRRAIMRLLEDSMEEKMLAREIKEGDSVIVDVDSEGKVTVLNGGSGTPTTS 863
>sp|P51332|CLPC_PORPU ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Porphyra purpurea GN=clpC PE=3 SV=1
Length = 821
Score = 353 bits (906), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 167/283 (59%), Positives = 221/283 (78%), Gaps = 12/283 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RARVG+++PNRPI+SF+F+GPTGVGKTEL ALA +FGS+ +M+R+DMSEYME+HT
Sbjct: 527 AIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHT 586
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVG+ GG LTEAVR +P++VILFDEIEKAH D+ N++LQ+L+DGR+TD
Sbjct: 587 VSKLIGSPPGYVGYSEGGYLTEAVRKKPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDA 646
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARES-----ILGSDQMERG-------VAEELRRRFRP 169
KG+T+D KNT++IMTSNIG VI + L DQ E V EEL++ FRP
Sbjct: 647 KGRTIDFKNTLLIMTSNIGSKVIEKGGGSLGFELSEDQTESQYTRVRSLVNEELKQYFRP 706
Query: 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS 229
EFLNR+DE+IVFRQL K ++ EI ++ML E++ R++ ++++L VT FK++L+EEGYNPS
Sbjct: 707 EFLNRLDEIIVFRQLTKDEVREIAELMLNEVFARIKQQDIQLNVTERFKERLVEEGYNPS 766
Query: 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNV 272
YGARPLRRA+ RLLED+LAE +L+G I+ GDS +D + G V
Sbjct: 767 YGARPLRRAVMRLLEDSLAEEVLSGKIKAGDSPVVDVTNEGEV 809
>sp|Q53LY0|CLPC3_ORYSJ Chaperone protein ClpC3, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPC3 PE=2 SV=1
Length = 932
Score = 353 bits (906), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 171/296 (57%), Positives = 219/296 (73%), Gaps = 19/296 (6%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RARVG+RDP RPI+SF+F GPTGVGK+ELA ALA Y+GS EAMVR+DMSE+MEKHT
Sbjct: 631 AIRRARVGLRDPRRPIASFIFAGPTGVGKSELAKALAAYYYGSPEAMVRLDMSEFMEKHT 690
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
V+K GSPPGYVG+ GGQLTEA+R RP++V+LFDE+EKAH DV N+MLQ+LDDGR+TD
Sbjct: 691 VAKLVGSPPGYVGYAEGGQLTEAIRRRPYAVVLFDEVEKAHPDVFNMMLQILDDGRLTDS 750
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGSDQM---------------ERGVAEELRRR 166
KG+TVD KN++IIMTSN+G VI + G Q+ + V EE++R
Sbjct: 751 KGRTVDFKNSLIIMTSNVGSGVIEK----GGRQLGFAGDGSGDGGYGVIKNMVEEEMKRY 806
Query: 167 FRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGY 226
FRPEFLNR+DE+IVFRQL K+++ EI IML E+ R+ K + L VT FK+ ++E+G+
Sbjct: 807 FRPEFLNRLDEMIVFRQLTKLEVKEIAGIMLAEVTGRIGGKGIGLQVTERFKELVVEQGF 866
Query: 227 NPSYGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYRHRNGSM 282
+PSYGARPLRRAI RLLED L + +L G I GDSV +D D GNV++ R+ +
Sbjct: 867 DPSYGARPLRRAIMRLLEDTLTDKMLAGEICAGDSVIVDADGDGNVVVVGRRSAGL 922
>sp|Q53N47|CLPC4_ORYSJ Chaperone protein ClpC4, chloroplastic OS=Oryza sativa subsp.
japonica GN=CPLC4 PE=3 SV=1
Length = 918
Score = 336 bits (861), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 160/282 (56%), Positives = 214/282 (75%), Gaps = 7/282 (2%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE----AMVRIDMSEYM 57
+ RAR+G++ P RP++S +F GPTGVGK+ELA ALA Y+GS E AMVR+DMSEYM
Sbjct: 631 AIRRARLGLKHPGRPVASLVFAGPTGVGKSELAKALAAYYYGSSESEEAAMVRLDMSEYM 690
Query: 58 EKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGR 117
EKH V++ GSPPGYV GGQLTEAVR RPH+V+L DE+EKAHRDV +++LQ+LDDGR
Sbjct: 691 EKHAVARLVGSPPGYVWHGEGGQLTEAVRRRPHAVVLLDEVEKAHRDVFDLLLQVLDDGR 750
Query: 118 VTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMER---GVAEELRRRFRPEFLNR 174
+TDGKG+TVD KNT+I+MT+NIG S+I G+ R V +E++R FRPEFLNR
Sbjct: 751 LTDGKGRTVDFKNTLIVMTTNIGSSLIVNNGGDGAAAAGRIKNTVTDEMKRHFRPEFLNR 810
Query: 175 IDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARP 234
+DEVI+F+ L ++++ +I IML+E R+ K ++L VT F++ ++EEG++PSYGARP
Sbjct: 811 LDEVIMFQPLTELEVGKIAGIMLEEFAGRVREKGIKLKVTDKFRELVVEEGFDPSYGARP 870
Query: 235 LRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYR 276
LRRA+ RLLED LAE +L G ++ GDSV +D DS GN ++ R
Sbjct: 871 LRRAVVRLLEDTLAEKMLAGEVREGDSVIVDADSAGNAVVRR 912
>sp|O78410|CLPC_GUITH ATP-dependent Clp protease ATP-binding subunit clpA homolog
OS=Guillardia theta GN=clpC PE=3 SV=1
Length = 819
Score = 335 bits (858), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 163/268 (60%), Positives = 205/268 (76%), Gaps = 12/268 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RARVG+++PNRPI+SF+F+GPTGVGKTEL ALA +FGS+EAMVR+DMSEYME+HT
Sbjct: 524 AIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEEAMVRLDMSEYMERHT 583
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVG+ GGQLTE+VR RP++V+LFDEIEK H DV N++LQ+L+DGR+TD
Sbjct: 584 VSKLIGSPPGYVGYNEGGQLTESVRRRPYTVVLFDEIEKGHPDVFNLLLQILEDGRLTDS 643
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARES-----ILGSDQMERG-------VAEELRRRFRP 169
KG+TVD KNT++I+TSN+G VI + L DQ E V EEL++ FRP
Sbjct: 644 KGRTVDFKNTLLILTSNVGSKVIEKGGGGLGFDLSEDQTESQYGRIKALVNEELKQYFRP 703
Query: 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS 229
EFLNR+DE+IVFRQL K ++ EI +IMLKE++ R+ K ++L VT FK LI EGYNP
Sbjct: 704 EFLNRLDEIIVFRQLTKDEVGEIAEIMLKEVFTRISEKGIQLEVTARFKTHLINEGYNPI 763
Query: 230 YGARPLRRAIGRLLEDNLAEIILTGYIQ 257
YGARPLRRA+ RLLED L+E L I+
Sbjct: 764 YGARPLRRAVMRLLEDTLSEEFLAEKIK 791
>sp|Q9RVI3|CLPB_DEIRA Chaperone protein ClpB OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=clpB PE=3 SV=2
Length = 852
Score = 320 bits (819), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/271 (59%), Positives = 195/271 (71%), Gaps = 2/271 (0%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RAR G+ DPNRP+ SF+F GP+GVGKTELA ALA F S +AMVRIDMSEYMEKHT
Sbjct: 573 AIRRARAGLNDPNRPLGSFMFLGPSGVGKTELAKALAEFLFDSSDAMVRIDMSEYMEKHT 632
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
V++ G+PPGYVGFE GGQLTEAVR RP++VILFDEIEKAH DV NV+LQ+LDDGR+TDG
Sbjct: 633 VARLIGAPPGYVGFEEGGQLTEAVRRRPYAVILFDEIEKAHPDVFNVLLQVLDDGRLTDG 692
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGSDQ--MERGVAEELRRRFRPEFLNRIDEVI 179
+G+TVD +NT+IIMTSNIG +I G D ++ V +ELR FRPEFLNR+D++I
Sbjct: 693 QGRTVDFRNTLIIMTSNIGSPLILEMQQRGEDAETIKSAVMDELRGEFRPEFLNRVDDII 752
Query: 180 VFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239
VF L L IVDI L + RL + + L +T K KL E GY+P+YGARPLRR I
Sbjct: 753 VFDALTAKDLQSIVDIQLGGLRRRLAERRITLHLTEDAKDKLAELGYDPAYGARPLRRTI 812
Query: 240 GRLLEDNLAEIILTGYIQVGDSVTMDCDSGG 270
+ +E LA IL G IQ G + +D GG
Sbjct: 813 SQYIETPLAREILGGQIQDGSVLNVDYGDGG 843
>sp|P42762|CLPD_ARATH Chaperone protein ClpD, chloroplastic OS=Arabidopsis thaliana
GN=CLPD PE=1 SV=1
Length = 945
Score = 317 bits (813), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 151/283 (53%), Positives = 205/283 (72%), Gaps = 13/283 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
++R+RVG++DP+RPI++ LF GPTGVGKTEL ALA YFGS+E+M+R+DMSEYME+HT
Sbjct: 642 AVKRSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGSEESMLRLDMSEYMERHT 701
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGYVGFE GG LTEA+R RP +V+LFDEIEKAH D+ N++LQL +DG +TD
Sbjct: 702 VSKLIGSPPGYVGFEEGGMLTEAIRRRPFTVVLFDEIEKAHPDIFNILLQLFEDGHLTDS 761
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARES------ILGSDQ-------MERGVAEELRRRFR 168
+G+ V KN +IIMTSN+G IA+ IL D+ M+ V EEL+ FR
Sbjct: 762 QGRRVSFKNALIIMTSNVGSLAIAKGRHGSIGFILDDDEEAASYTGMKALVVEELKNYFR 821
Query: 169 PEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNP 228
PE LNRIDE+++FRQL K Q+MEI+++ML+++ RL A + L V+ K+ + ++GY+P
Sbjct: 822 PELLNRIDEIVIFRQLEKAQMMEILNLMLQDLKSRLVALGVGLEVSEPVKELICKQGYDP 881
Query: 229 SYGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGN 271
+YGARPLRR + ++ED L+E L G + GD+ + D GN
Sbjct: 882 AYGARPLRRTVTEIVEDPLSEAFLAGSFKPGDTAFVVLDDTGN 924
>sp|Q72IK9|CLPB_THET2 Chaperone protein ClpB OS=Thermus thermophilus (strain HB27 / ATCC
BAA-163 / DSM 7039) GN=clpB PE=3 SV=1
Length = 854
Score = 316 bits (809), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/274 (57%), Positives = 197/274 (71%), Gaps = 4/274 (1%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RAR G++DPNRPI SFLF GPTGVGKTELA LA F ++EAM+RIDM+EYMEKH
Sbjct: 573 AIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG+E GGQLTEAVR RP+SVILFDEIEKAH DV N++LQ+LDDGR+TD
Sbjct: 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDS 692
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMER---GVAEELRRRFRPEFLNRIDEV 178
G+TVD +NT+II+TSN+G +I E + ER V + L++ FRPEFLNR+DE+
Sbjct: 693 HGRTVDFRNTVIILTSNLGSPLIL-EGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEI 751
Query: 179 IVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRA 238
+VFR L K Q+ +IV+I L + RL K + L +T K L E GY+P +GARPLRR
Sbjct: 752 VVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRV 811
Query: 239 IGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNV 272
I R LE LA+ IL G ++ GD V +D G V
Sbjct: 812 IQRELETPLAQKILAGEVKEGDRVQVDVGPAGLV 845
>sp|Q9RA63|CLPB_THET8 Chaperone protein ClpB OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=clpB PE=1 SV=2
Length = 854
Score = 316 bits (809), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 157/274 (57%), Positives = 197/274 (71%), Gaps = 4/274 (1%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RAR G++DPNRPI SFLF GPTGVGKTELA LA F ++EAM+RIDM+EYMEKH
Sbjct: 573 AIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG+E GGQLTEAVR RP+SVILFDEIEKAH DV N++LQ+LDDGR+TD
Sbjct: 633 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDS 692
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMER---GVAEELRRRFRPEFLNRIDEV 178
G+TVD +NT+II+TSN+G +I E + ER V + L++ FRPEFLNR+DE+
Sbjct: 693 HGRTVDFRNTVIILTSNLGSPLIL-EGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEI 751
Query: 179 IVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRA 238
+VFR L K Q+ +IV+I L + RL K + L +T K L E GY+P +GARPLRR
Sbjct: 752 VVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRV 811
Query: 239 IGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNV 272
I R LE LA+ IL G ++ GD V +D G V
Sbjct: 812 IQRELETPLAQKILAGEVKEGDRVQVDVGPAGLV 845
>sp|Q6GBW3|CLPC_STAAS ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3
SV=1
Length = 818
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/272 (56%), Positives = 199/272 (73%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG +AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG ++GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESILG----SD-----QMERGVAEELRRRFRPEFLNRI 175
TVD +NTIIIMTSN+G + + G SD + + + +EL+ FRPEFLNR+
Sbjct: 646 TVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L K +L EIV +M+ ++ RL +N+ + VT K K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G VT+D D
Sbjct: 766 IRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797
>sp|Q6GJE4|CLPC_STAAR ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3
SV=1
Length = 818
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/272 (56%), Positives = 199/272 (73%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG +AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG ++GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESILG----SD-----QMERGVAEELRRRFRPEFLNRI 175
TVD +NTIIIMTSN+G + + G SD + + + +EL+ FRPEFLNR+
Sbjct: 646 TVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L K +L EIV +M+ ++ RL +N+ + VT K K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G VT+D D
Sbjct: 766 IRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797
>sp|Q7A797|CLPC_STAAN ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain N315) GN=clpC PE=1 SV=1
Length = 818
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/272 (56%), Positives = 199/272 (73%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG +AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG ++GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESILG----SD-----QMERGVAEELRRRFRPEFLNRI 175
TVD +NTIIIMTSN+G + + G SD + + + +EL+ FRPEFLNR+
Sbjct: 646 TVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L K +L EIV +M+ ++ RL +N+ + VT K K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G VT+D D
Sbjct: 766 IRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797
>sp|Q99W78|CLPC_STAAM ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain Mu50 / ATCC 700699)
GN=clpC PE=1 SV=1
Length = 818
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/272 (56%), Positives = 199/272 (73%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG +AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG ++GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESILG----SD-----QMERGVAEELRRRFRPEFLNRI 175
TVD +NTIIIMTSN+G + + G SD + + + +EL+ FRPEFLNR+
Sbjct: 646 TVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L K +L EIV +M+ ++ RL +N+ + VT K K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G VT+D D
Sbjct: 766 IRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797
>sp|P0C281|CLPC_STAAC ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain COL) GN=clpC PE=3 SV=1
Length = 818
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/272 (56%), Positives = 199/272 (73%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG +AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG ++GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESILG----SD-----QMERGVAEELRRRFRPEFLNRI 175
TVD +NTIIIMTSN+G + + G SD + + + +EL+ FRPEFLNR+
Sbjct: 646 TVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L K +L EIV +M+ ++ RL +N+ + VT K K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G VT+D D
Sbjct: 766 IRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797
>sp|Q2YSD6|CLPC_STAAB ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain bovine RF122 / ET3-1)
GN=clpC PE=3 SV=1
Length = 818
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/272 (56%), Positives = 199/272 (73%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG +AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG ++GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESILG----SD-----QMERGVAEELRRRFRPEFLNRI 175
TVD +NTIIIMTSN+G + + G SD + + + +EL+ FRPEFLNR+
Sbjct: 646 TVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L K +L EIV +M+ ++ RL +N+ + VT K K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G VT+D D
Sbjct: 766 IRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797
>sp|Q2G0P5|CLPC_STAA8 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain NCTC 8325) GN=clpC PE=1
SV=1
Length = 818
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/272 (56%), Positives = 199/272 (73%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG +AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG ++GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESILG----SD-----QMERGVAEELRRRFRPEFLNRI 175
TVD +NTIIIMTSN+G + + G SD + + + +EL+ FRPEFLNR+
Sbjct: 646 TVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L K +L EIV +M+ ++ RL +N+ + VT K K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G VT+D D
Sbjct: 766 IRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797
>sp|Q2FJB5|CLPC_STAA3 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain USA300) GN=clpC PE=3
SV=1
Length = 818
Score = 315 bits (806), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 153/272 (56%), Positives = 199/272 (73%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG +AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG ++GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESILG----SD-----QMERGVAEELRRRFRPEFLNRI 175
TVD +NTIIIMTSN+G + + G SD + + + +EL+ FRPEFLNR+
Sbjct: 646 TVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L K +L EIV +M+ ++ RL +N+ + VT K K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G VT+D D
Sbjct: 766 IRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797
>sp|Q8CQ88|CLPC_STAES ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 12228)
GN=clpC PE=3 SV=1
Length = 817
Score = 314 bits (804), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 152/272 (55%), Positives = 200/272 (73%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG +AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG ++GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESIL-------GSD--QMERGVAEELRRRFRPEFLNRI 175
TVD +NT+IIMTSN+G + + GSD + + + +EL+ FRPEFLNR+
Sbjct: 646 TVDFRNTVIIMTSNVGAQELQDQRFAGFGGASEGSDYETVRKTMMKELKNSFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L K +L EIV +M+ ++ RL +N+ + VT K+K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G VT+D D
Sbjct: 766 IRAIQKTVEDNLSELILDGNKIEGKEVTIDHD 797
>sp|Q5HRM8|CLPC_STAEQ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus epidermidis (strain ATCC 35984 /
RP62A) GN=clpC PE=3 SV=1
Length = 817
Score = 314 bits (804), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 152/272 (55%), Positives = 200/272 (73%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG +AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG ++GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESIL-------GSD--QMERGVAEELRRRFRPEFLNRI 175
TVD +NT+IIMTSN+G + + GSD + + + +EL+ FRPEFLNR+
Sbjct: 646 TVDFRNTVIIMTSNVGAQELQDQRFAGFGGASEGSDYETVRKTMMKELKNSFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L K +L EIV +M+ ++ RL +N+ + VT K+K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTDKAKEKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G VT+D D
Sbjct: 766 IRAIQKTVEDNLSELILDGNKIEGKEVTIDHD 797
>sp|Q7U637|CLPB1_SYNPX Chaperone protein ClpB 1 OS=Synechococcus sp. (strain WH8102)
GN=clpB1 PE=3 SV=2
Length = 862
Score = 313 bits (803), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 153/270 (56%), Positives = 196/270 (72%), Gaps = 8/270 (2%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
++R+R G+ DPNRPI+SFLF GPTGVGKTEL+ ALA F S +AMVRIDMSEYMEKHT
Sbjct: 588 AIQRSRAGLSDPNRPIASFLFLGPTGVGKTELSKALANRLFDSDDAMVRIDMSEYMEKHT 647
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG+E GGQLTEAVR RP++VILFDE+EKAH DV NVMLQ+LDDGRVTDG
Sbjct: 648 VSRLIGAPPGYVGYEAGGQLTEAVRRRPYAVILFDEVEKAHPDVFNVMLQILDDGRVTDG 707
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGSD-----QMERGVAEELRRRFRPEFLNRID 176
+G+TVD NT++I+TSNIG I L D ME+ V E L+ +FRPEFLNR+D
Sbjct: 708 QGRTVDFTNTVLILTSNIGSQSILE---LAGDPEQHTAMEQRVNEALKAKFRPEFLNRLD 764
Query: 177 EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLR 236
+ I+FR L K +L IV + ++ + RLE + ++L ++ L G++P YGARPL+
Sbjct: 765 DQIIFRSLEKEELRRIVSLQVERLRSRLEQRKLDLQLSDIAADWLATIGFDPVYGARPLK 824
Query: 237 RAIGRLLEDNLAEIILTGYIQVGDSVTMDC 266
RAI R LE +A+ IL G + G +V +D
Sbjct: 825 RAIQRELETPIAKAILAGQLSEGQTVQVDA 854
>sp|Q7V8B1|CLPB_PROMM Chaperone protein ClpB OS=Prochlorococcus marinus (strain MIT 9313)
GN=clpB PE=3 SV=1
Length = 865
Score = 310 bits (795), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 157/282 (55%), Positives = 201/282 (71%), Gaps = 12/282 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
++R+R G+ DPNRPI+SFLF GPTGVGKTEL+ ALA + F S+ A+VRIDMSEYMEKH+
Sbjct: 589 AIQRSRAGLSDPNRPIASFLFLGPTGVGKTELSKALASQLFDSEAALVRIDMSEYMEKHS 648
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG+E GGQLTEAVR RP++VILFDE+EKAH+DV NVMLQ+LDDGRVTDG
Sbjct: 649 VSRLIGAPPGYVGYEAGGQLTEAVRRRPYAVILFDEVEKAHQDVFNVMLQILDDGRVTDG 708
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGSD-----QMERGVAEELRRRFRPEFLNRID 176
+G+TVD NT++I+TSNIG I LG D +MER V + L FRPEFLNR+D
Sbjct: 709 QGRTVDFTNTVLILTSNIGSQSILD---LGGDDSQYREMERRVHDALHAHFRPEFLNRLD 765
Query: 177 EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLR 236
E I+F L + +L +IV + + + ERL + + L ++ T L GY+P YGARPL+
Sbjct: 766 ETIIFHSLRREELRQIVALQVNRLRERLCDRKLGLEISDTAADWLANAGYDPVYGARPLK 825
Query: 237 RAIGRLLEDNLAEIILTGYIQVGDS--VTMDCDSGGNVIMYR 276
RAI R LE +A+ IL G GDS V +D D + +R
Sbjct: 826 RAIQRELETPIAKSILAGL--YGDSQIVHVDVDVDQERLSFR 865
>sp|Q8NXY8|CLPC_STAAW ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1
Length = 818
Score = 310 bits (794), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 152/272 (55%), Positives = 198/272 (72%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG +AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDDDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+P GYVG ++GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPLGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESILG----SD-----QMERGVAEELRRRFRPEFLNRI 175
TVD +NTIIIMTSN+G + + G SD + + + +EL+ FRPEFLNR+
Sbjct: 646 TVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L K +L EIV +M+ ++ RL +N+ + VT K K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTDKAKDKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G VT+D D
Sbjct: 766 IRAIQKTIEDNLSELILDGNQIEGKKVTVDHD 797
>sp|P53533|CLPB1_SYNE7 Chaperone protein ClpB 1 OS=Synechococcus elongatus (strain PCC
7942) GN=clpB1 PE=2 SV=3
Length = 874
Score = 310 bits (794), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 153/271 (56%), Positives = 195/271 (71%), Gaps = 6/271 (2%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
++R+R G+ DP RPI+SF+F GPTGVGKTELA ALA F +++AM+RIDMSEYMEKH
Sbjct: 589 AIQRSRAGLSDPKRPIASFIFLGPTGVGKTELAKALAAYLFDTEDAMIRIDMSEYMEKHA 648
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG++ GGQLTEAVR RP+SVILFDEIEKAH DV NVMLQ+LDDGRVTD
Sbjct: 649 VSRLIGAPPGYVGYDEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDS 708
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGSD----QMERGVAEELRRRFRPEFLNRIDE 177
+G+TVD KNTI+I+TSNIG I + G D +M V E LR FRPEFLNR+DE
Sbjct: 709 RGRTVDFKNTILILTSNIGSQYIL--DVAGDDSRYEEMRSRVTEALRANFRPEFLNRVDE 766
Query: 178 VIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRR 237
I+F L K QL +IV I L + ERL + + L+++ L+E G++P YGARPL+R
Sbjct: 767 TIIFHSLRKDQLQQIVRIQLHRLEERLSDRKLSLSMSPEAIDFLVEIGFDPVYGARPLKR 826
Query: 238 AIGRLLEDNLAEIILTGYIQVGDSVTMDCDS 268
I R LE +A+ IL G GD++ + ++
Sbjct: 827 VIQRELETAIAKAILRGQFSDGDTIQVAVEN 857
>sp|Q6H795|CLPD1_ORYSJ Chaperone protein ClpD1, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD1 PE=2 SV=1
Length = 938
Score = 309 bits (792), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 150/284 (52%), Positives = 203/284 (71%), Gaps = 11/284 (3%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
++R+RVG+ DP+RPI++ LF GPTGVGKTEL ALA YFGS+ AM+R+DMSEYME+HT
Sbjct: 638 AVKRSRVGLNDPDRPIATLLFCGPTGVGKTELTKALAASYFGSESAMLRLDMSEYMERHT 697
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGY+G+ G LTEAVR +P +V+L DEIEKAH D+ N++LQ+ +DG ++D
Sbjct: 698 VSKLIGSPPGYIGYGETGTLTEAVRRKPFTVVLLDEIEKAHPDIFNILLQIFEDGHLSDS 757
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIAR---------ESILGSD--QMERGVAEELRRRFRPE 170
+G+ V KNT+I+MTSNIG + I++ E S M+ V EEL+ FRPE
Sbjct: 758 QGRRVSFKNTLIVMTSNIGSTSISKGRRSMGFMTEDTESSSYVAMKSLVMEELKAFFRPE 817
Query: 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSY 230
LNRIDE++VFR L K Q++ I+DI+L+E+ RL A + L V+ K + EEGY+ SY
Sbjct: 818 LLNRIDEMVVFRPLEKTQMLAILDIILQEVKGRLLALGIGLEVSDAMKDLICEEGYDKSY 877
Query: 231 GARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIM 274
GARPLRRA+ L+ED ++E IL G + GD++ MD D+GG + M
Sbjct: 878 GARPLRRAVTHLIEDVISEAILFGEYKPGDTILMDIDAGGKLCM 921
>sp|Q4L3I4|CLPC_STAHJ ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus haemolyticus (strain JCSC1435) GN=clpC
PE=3 SV=1
Length = 824
Score = 309 bits (791), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 147/272 (54%), Positives = 199/272 (73%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG ++AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEEDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG + GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPPGYVGHDEGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESILG---------SDQMERGVAEELRRRFRPEFLNRI 175
VD +NT+IIMTSN+G + + G + + + + +EL+ FRPEFLNR+
Sbjct: 646 QVDFRNTVIIMTSNVGAQELQDQRFAGFGGGSEGHDYETIRKTMMKELKNSFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L+K +L EIV +M+ ++ +RL +++ + VT K+K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLSKDELKEIVTMMVNKLTQRLSEQDINIVVTDKAKEKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G V +D D
Sbjct: 766 IRAIQKTVEDNLSELILDGNQIEGKEVVIDHD 797
>sp|P74459|CLPB1_SYNY3 Chaperone protein ClpB 1 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=clpB1 PE=3 SV=1
Length = 898
Score = 309 bits (791), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 148/270 (54%), Positives = 197/270 (72%), Gaps = 2/270 (0%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RAR G++DP+RPI SFLF GPTGVGKTELA ALA F S+EAMVRIDMSEYMEKH
Sbjct: 598 AIRRARAGMKDPSRPIGSFLFMGPTGVGKTELARALAGFLFDSEEAMVRIDMSEYMEKHA 657
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG+E GGQL+EAVR RP+SV+L DE+EKAH DV N++LQ+LDDGR+TD
Sbjct: 658 VSRLIGAPPGYVGYEEGGQLSEAVRRRPYSVVLLDEVEKAHLDVFNILLQVLDDGRITDS 717
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGS--DQMERGVAEELRRRFRPEFLNRIDEVI 179
+G+ VD +NTII+MTSNIG I S + D+M++ V + LR+ FRPEFLNRID++I
Sbjct: 718 QGRVVDFRNTIIVMTSNIGSDHILSLSADDADYDKMQKQVLQSLRKHFRPEFLNRIDDLI 777
Query: 180 VFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239
+F L + +L IV + +K I + L+ + + L+++ ++ GY+P+YGARPL+RAI
Sbjct: 778 IFHTLKRDELRRIVVLQIKRIEKLLDEQKITLSLSDAALDHIVSAGYDPTYGARPLKRAI 837
Query: 240 GRLLEDNLAEIILTGYIQVGDSVTMDCDSG 269
R LE+ +A IL GD + +DC G
Sbjct: 838 QRQLENPIATKILENTFVAGDKILIDCVDG 867
>sp|Q49V34|CLPC_STAS1 ATP-dependent Clp protease ATP-binding subunit ClpC
OS=Staphylococcus saprophyticus subsp. saprophyticus
(strain ATCC 15305 / DSM 20229) GN=clpC PE=3 SV=1
Length = 820
Score = 308 bits (789), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 146/272 (53%), Positives = 199/272 (73%), Gaps = 9/272 (3%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++DP RPI SF+F GPTGVGKTELA ALA FG +AM+R+DMSE+MEKH VS+
Sbjct: 526 RARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGEDDAMIRVDMSEFMEKHAVSR 585
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG ++GGQLTE VR +P+SVILFDEIEKAH DV N++LQ+LDDG +TD KG+
Sbjct: 586 LVGAPPGYVGHDDGGQLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGR 645
Query: 125 TVDLKNTIIIMTSNIGDSVIARESILG---------SDQMERGVAEELRRRFRPEFLNRI 175
VD +NT+IIMTSN+G + + G + + + + +EL+ FRPEFLNR+
Sbjct: 646 RVDFRNTVIIMTSNVGAQELQDQRFAGFGGATEGQDYESIRKTMMKELKNAFRPEFLNRV 705
Query: 176 DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235
D++IVF +L+K +L +IV +M+ ++ RL +++ ++VT K+K+ EEGY+P YGARPL
Sbjct: 706 DDIIVFHKLSKDELKQIVTMMVNKLTNRLSEQDINISVTEAAKEKIAEEGYDPEYGARPL 765
Query: 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267
RAI + +EDNL+E+IL G G V +D D
Sbjct: 766 IRAIQKTVEDNLSELILDGNQIEGKEVKIDHD 797
>sp|P37571|CLPC_BACSU Negative regulator of genetic competence ClpC/MecB OS=Bacillus
subtilis (strain 168) GN=clpC PE=1 SV=1
Length = 810
Score = 308 bits (788), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 148/274 (54%), Positives = 196/274 (71%), Gaps = 9/274 (3%)
Query: 9 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGS 68
G++DP RPI SF+F GPTGVGKTELA ALA FG +E+M+RIDMSEYMEKH+ S+ GS
Sbjct: 530 GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGS 589
Query: 69 PPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDL 128
PPGYVG++ GGQLTE VR +P+SV+L DEIEKAH DV N++LQ+L+DGR+TD KG+TVD
Sbjct: 590 PPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDF 649
Query: 129 KNTIIIMTSNIGDSVIARESILG---------SDQMERGVAEELRRRFRPEFLNRIDEVI 179
+NTI+IMTSN+G S + R +G M+ V EL+R FRPEF+NRIDE+I
Sbjct: 650 RNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEII 709
Query: 180 VFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239
VF L K L EIV +M ++ +RL+ +++ + +T K K+ EEG + YGARPLRRAI
Sbjct: 710 VFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAI 769
Query: 240 GRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVI 273
+ +ED L+E +L G I G + +D + G V+
Sbjct: 770 QKHVEDRLSEELLRGNIHKGQHIVLDVEDGEFVV 803
>sp|Q7N788|CLPB_PHOLL Chaperone protein ClpB OS=Photorhabdus luminescens subsp. laumondii
(strain TT01) GN=clpB PE=3 SV=1
Length = 857
Score = 308 bits (788), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 149/268 (55%), Positives = 196/268 (73%), Gaps = 1/268 (0%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ R+R G+ DPNRPI SFLF GPTGVGKTEL ALA F S +AMVRIDMSE+MEKH
Sbjct: 583 AIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFLFDSDDAMVRIDMSEFMEKHA 642
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG+E GG LTEAVR RP+SVIL DE+EKAH DV N++LQ+LDDGR+TDG
Sbjct: 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHSDVFNILLQVLDDGRLTDG 702
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIA-RESILGSDQMERGVAEELRRRFRPEFLNRIDEVIV 180
+G+TVD +NT++IMTSN+G +I R L D+M+ V + FRPEF+NRIDE +V
Sbjct: 703 QGRTVDFRNTVVIMTSNLGSDMIQERFGSLNYDEMKDIVMGIVSHNFRPEFINRIDEAVV 762
Query: 181 FRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240
F L + L I DI L+ +Y+RLE + ++T+T + L E G++P YGARPL+RAI
Sbjct: 763 FHPLGRRHLSAIADIQLQRLYKRLEERGYQVTITQQALEILAEAGFDPVYGARPLKRAIQ 822
Query: 241 RLLEDNLAEIILTGYIQVGDSVTMDCDS 268
+ +E+ LA+ IL+G + G VT+D ++
Sbjct: 823 QEIENPLAQKILSGQLLPGKPVTLDVEN 850
>sp|Q8YM56|CLPB2_NOSS1 Chaperone protein ClpB 2 OS=Nostoc sp. (strain PCC 7120 / UTEX
2576) GN=clpB2 PE=3 SV=2
Length = 872
Score = 308 bits (788), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 151/269 (56%), Positives = 193/269 (71%), Gaps = 6/269 (2%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
++R+R G+ DPNRP +SF+F GPTGVGKTELA ALA F +++A+VRIDMSEYMEKH
Sbjct: 589 AIQRSRAGLADPNRPTASFVFLGPTGVGKTELAKALASYMFDTEDALVRIDMSEYMEKHA 648
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG+E GGQLTE +R RP++VILFDEIEKAH DV N+ LQ+LDDGRVTD
Sbjct: 649 VSRLIGAPPGYVGYEEGGQLTETIRRRPYAVILFDEIEKAHPDVFNIFLQILDDGRVTDA 708
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGS----DQMERGVAEELRRRFRPEFLNRIDE 177
+G TVD KNTIIIMTSNIG I I G D+M V E +R FRPEFLNRIDE
Sbjct: 709 QGHTVDFKNTIIIMTSNIGSQYIL--DIAGDNSRYDEMRHRVMEAMRNSFRPEFLNRIDE 766
Query: 178 VIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRR 237
VI+F L+K +L +IV + ++ + RL+ + + L ++ L E GY+P +GARPL+R
Sbjct: 767 VIIFHSLDKKELRQIVQLQVERLKARLDDRKISLRLSDVALDFLAEVGYDPVFGARPLKR 826
Query: 238 AIGRLLEDNLAEIILTGYIQVGDSVTMDC 266
AI R LE +A+ IL G GD++ +D
Sbjct: 827 AIQRELETQIAKAILRGEFNDGDTIFVDV 855
>sp|Q74X11|CLPB_YERPE Chaperone protein ClpB OS=Yersinia pestis GN=clpB PE=3 SV=2
Length = 857
Score = 305 bits (780), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 147/269 (54%), Positives = 197/269 (73%), Gaps = 1/269 (0%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ R+R G+ DPNRPI SFLF GPTGVGKTEL ALA F S +AMVRIDMSE+MEKH+
Sbjct: 583 AIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALATFLFDSDDAMVRIDMSEFMEKHS 642
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG+E GG LTEAVR RP+SVIL DE+EKAH DV N++LQ+LDDGR+TDG
Sbjct: 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG 702
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARE-SILGSDQMERGVAEELRRRFRPEFLNRIDEVIV 180
+G+TVD +NT++IMTSN+G +I + +M+ V + + FRPEF+NRIDEV+V
Sbjct: 703 QGRTVDFRNTVVIMTSNLGSDLIQEHFGQMNYSEMKTVVMDVVSHHFRPEFINRIDEVVV 762
Query: 181 FRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240
F L + L I +I L+ +Y+RLE + E+ +T + L E G++P YGARPL+RAI
Sbjct: 763 FHPLGRAHLASIANIQLERLYKRLEERGYEVKITQPALEFLGEAGFDPVYGARPLKRAIQ 822
Query: 241 RLLEDNLAEIILTGYIQVGDSVTMDCDSG 269
+ +E+ LA+ IL+G + G VT+D ++G
Sbjct: 823 QEIENPLAQQILSGKLIPGIPVTLDVENG 851
>sp|Q74FF1|CLPB_GEOSL Chaperone protein ClpB OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=clpB PE=3 SV=1
Length = 865
Score = 304 bits (778), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 146/270 (54%), Positives = 195/270 (72%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RAR G+ DPNRPI SFLF GPTGVGKTE A ALA F +A+VRIDMSEY EKHT
Sbjct: 589 AIRRARSGLSDPNRPIGSFLFLGPTGVGKTETAKALAEFLFNDDQAIVRIDMSEYQEKHT 648
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
V++ G+PPGYVG+E GGQLTEAVR RP+S++LFDEIEKAH +V NV+LQ+LDDGR+TDG
Sbjct: 649 VARLIGAPPGYVGYEEGGQLTEAVRRRPYSIVLFDEIEKAHPEVFNVLLQVLDDGRLTDG 708
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVF 181
+G+TVD +NT+IIMTSN+G I + +M+ V E L+ F+PEFLNRIDE++++
Sbjct: 709 QGRTVDFRNTVIIMTSNLGSQWIQQYGSSDYARMKAMVTETLKEGFKPEFLNRIDEIVIY 768
Query: 182 RQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGR 241
L Q+ +IVDI ++ + +RL + + L ++ ++ L EGY+P+YGARPL+R I R
Sbjct: 769 HALPLEQIKKIVDIQVECLKQRLADRRIVLELSDKAREYLSREGYDPAYGARPLKRTIQR 828
Query: 242 LLEDNLAEIILTGYIQVGDSVTMDCDSGGN 271
++D LA +L G Q GD+V +D G
Sbjct: 829 KIQDPLALALLEGKFQEGDTVRVDLSVSGE 858
>sp|P74361|CLPB2_SYNY3 Chaperone protein ClpB 2 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=clpB2 PE=3 SV=1
Length = 872
Score = 304 bits (778), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 149/268 (55%), Positives = 191/268 (71%), Gaps = 6/268 (2%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
++R+R G+ DPNRP +SF+F GPTGVGKTELA ALA F ++EA+VRIDMSEYMEKH
Sbjct: 589 AIQRSRAGLSDPNRPTASFIFLGPTGVGKTELAKALAKNLFDTEEALVRIDMSEYMEKHA 648
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG+E GGQLTEA+R RP+SVILFDEIEKAH DV NVMLQ+LDDGR+TD
Sbjct: 649 VSRLMGAPPGYVGYEEGGQLTEAIRRRPYSVILFDEIEKAHGDVFNVMLQILDDGRLTDA 708
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGSD----QMERGVAEELRRRFRPEFLNRIDE 177
+G VD KNTIIIMTSN+G I + G D +M V + +R FRPEFLNR+DE
Sbjct: 709 QGHVVDFKNTIIIMTSNLGSQYIL--DVAGDDSRYEEMRSRVMDVMRENFRPEFLNRVDE 766
Query: 178 VIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRR 237
I+F L K +L IV I ++ + RLE + + L +T L GY+P YGARPL+R
Sbjct: 767 TIIFHGLQKSELRSIVQIQIQSLATRLEEQKLTLKLTDKALDFLAAVGYDPVYGARPLKR 826
Query: 238 AIGRLLEDNLAEIILTGYIQVGDSVTMD 265
A+ + LE +A+ IL G + G+++ +D
Sbjct: 827 AVQKYLETAIAKGILRGDYKPGETIVVD 854
>sp|O87444|CLPB_PLEBO Chaperone protein ClpB OS=Plectonema boryanum GN=clpB PE=2 SV=2
Length = 873
Score = 303 bits (777), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 158/273 (57%), Positives = 190/273 (69%), Gaps = 16/273 (5%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
++R+R G+ DPNRP +SF+F GPTGVGKTELA ALA F ++EAMVRIDMSEYMEKH+
Sbjct: 590 AIQRSRAGLSDPNRPTASFIFLGPTGVGKTELAKALAAFLFDTEEAMVRIDMSEYMEKHS 649
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG+E GGQLTEAVR RP+SVILFDEIEKAH DV NVMLQ+LDDGRVTD
Sbjct: 650 VSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDS 709
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIAR--------ESILGSDQMERGVAEELRRRFRPEFLN 173
+G+TVD KNTIIIMTSNIG I E IL V E + FRPEFLN
Sbjct: 710 QGRTVDFKNTIIIMTSNIGSQYIFEYGGDDDRYEEILSR------VMEAMLSNFRPEFLN 763
Query: 174 RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233
RIDE+I+F L K QL EIV I + RL A+ M L ++ + EG++P YGAR
Sbjct: 764 RIDEIIIFHSLQKAQLREIVKIQTHRLESRL-ARKMSLKLSDA-ALDFLAEGFDPVYGAR 821
Query: 234 PLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDC 266
PL+RAI R LE +A+ IL GD++ +D
Sbjct: 822 PLKRAIQRELETTIAKEILRSNFTEGDTIFVDV 854
>sp|Q8EU05|CLPB_OCEIH Chaperone protein ClpB OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=clpB PE=3
SV=1
Length = 809
Score = 301 bits (772), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 143/282 (50%), Positives = 201/282 (71%), Gaps = 9/282 (3%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ RAR G++DP RPI SF+F GPTGVGKTELA ALA F ++AM+RIDMSEYME+H
Sbjct: 526 AIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEVMFADEDAMIRIDMSEYMERHA 585
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
S+ GSPPGYVG++ GGQLTE VR +P+SV+L DE+EKAH +V N++LQ+L+DGR+TD
Sbjct: 586 TSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEVEKAHPEVFNILLQVLEDGRLTDS 645
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILG---------SDQMERGVAEELRRRFRPEFL 172
KG+ VD +NT+IIMTSN+G S + R +G M+ V EEL++ FRPEFL
Sbjct: 646 KGRVVDFRNTVIIMTSNVGASELKRNKYVGFALDNEEKDYKDMKSKVIEELKKAFRPEFL 705
Query: 173 NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGA 232
NRIDE IVF L K + +IV +M++++ +RL+ +++ L++T +K+ EG++P YGA
Sbjct: 706 NRIDETIVFHSLEKEHMKDIVTLMVQQLQKRLKEQDLHLSLTDKAIEKIANEGFDPEYGA 765
Query: 233 RPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIM 274
RPLRR+I + +ED L+E +L G I+ V + ++ G I+
Sbjct: 766 RPLRRSIQKNIEDLLSEELLRGAIEKEQQVKIGLNNKGEFIV 807
>sp|Q7XL03|CLPD2_ORYSJ Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD2 PE=2 SV=2
Length = 937
Score = 301 bits (772), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 146/287 (50%), Positives = 203/287 (70%), Gaps = 12/287 (4%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
++R+RVG+ DP+RPI++ +F GPTGVGKTEL ALA YFGS+ A VR+DMSEYME+H
Sbjct: 636 AVKRSRVGLNDPDRPIATLIFCGPTGVGKTELTKALAASYFGSESATVRLDMSEYMERHA 695
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VSK GSPPGY+GF GG LTEAVR +P +V+L DEIEKAH D+ N++LQ+ +DG +TD
Sbjct: 696 VSKLIGSPPGYMGFGEGGTLTEAVRRKPFTVVLLDEIEKAHPDIFNILLQIFEDGHLTDS 755
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIA--RESILGSDQ----------MERGVAEELRRRFRP 169
+G+ V KNT+I+MTSN+G + I+ + SI Q M+ V EEL+ FRP
Sbjct: 756 QGRRVSFKNTLIVMTSNVGSTSISNGKRSIGFQTQTDTEEKSYAAMKSLVMEELKAFFRP 815
Query: 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS 229
E LNRIDEV+VF L K Q++ I++IML+E+ R+ A + L V+ + K + + GY+ S
Sbjct: 816 ELLNRIDEVVVFHPLEKTQMLAILNIMLQEVKGRILALGIGLEVSDSMKDLISQHGYDKS 875
Query: 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYR 276
YGARPLRRA+ +L+ED ++E IL+G + GD++ +D D+ G + R
Sbjct: 876 YGARPLRRAVTQLVEDVISEAILSGQFKPGDTIMVDTDATGKPCLSR 922
>sp|Q7UM33|CLPB_RHOBA Chaperone protein ClpB OS=Rhodopirellula baltica (strain SH1)
GN=clpB PE=3 SV=2
Length = 881
Score = 301 bits (771), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 142/265 (53%), Positives = 191/265 (72%), Gaps = 2/265 (0%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
R+R G++DPNRPI SFLF GPTGVGKTEL ALA F + AMVRIDMSE+ME+H+VS+
Sbjct: 609 RSRSGLQDPNRPIGSFLFLGPTGVGKTELCKALAEVMFDDESAMVRIDMSEFMERHSVSR 668
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G+PPGYVG+E GG+LTEAVR RP++VIL DE+EKAH DV NV+LQ+LDDGR+TDG+G+
Sbjct: 669 LIGAPPGYVGYEEGGKLTEAVRRRPYAVILLDEMEKAHPDVFNVLLQVLDDGRLTDGQGR 728
Query: 125 TVDLKNTIIIMTSNIGDSVIAR--ESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFR 182
TV+ NT+++MTSN+G VI R E G D+M + V + L+ RF PEFLNRID+ ++F
Sbjct: 729 TVNFTNTVVVMTSNVGSQVIQRVTEEGGGEDEMRQAVEDALKARFLPEFLNRIDDTVIFH 788
Query: 183 QLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242
L + Q+ IV + L+E+ RL A + +T ++ E GY+P+YGARPL+R I R
Sbjct: 789 PLQQTQIRRIVQLQLEELRSRLAANGLSFEITDAAIDQIAEVGYDPAYGARPLKRVIQRE 848
Query: 243 LEDNLAEIILTGYIQVGDSVTMDCD 267
+++ LA IL G ++ +D D
Sbjct: 849 VQNPLASAILKNSYAEGTTIKIDHD 873
>sp|Q7WSY8|CLPB_PROFC Chaperone protein ClpB OS=Propionibacterium freudenreichii subsp.
shermanii (strain ATCC 9614 / CIP 103027 / CIRM-BIA1)
GN=clpB PE=2 SV=2
Length = 866
Score = 300 bits (768), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 144/270 (53%), Positives = 192/270 (71%), Gaps = 1/270 (0%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ R+R GI DPNRP SF+F GPTGVGKTELA ALA F + AMVRIDMSEYMEKH+
Sbjct: 586 AVRRSRAGISDPNRPTGSFMFLGPTGVGKTELAKALADFLFDDETAMVRIDMSEYMEKHS 645
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG+E GGQLTEAVR RP+SV+L DEIEKAH DV N++LQ+LDDGR+TDG
Sbjct: 646 VSRLVGAPPGYVGYEEGGQLTEAVRRRPYSVVLLDEIEKAHPDVFNILLQVLDDGRLTDG 705
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVF 181
+G+TVD +N I+IMTSN+G +A S + ++ V ++ FRPEFLNR+DE+++F
Sbjct: 706 QGRTVDFRNVILIMTSNLGSQFMADPS-MSPEERRNQVMAVVKDHFRPEFLNRLDEIVLF 764
Query: 182 RQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGR 241
+L++ L +IVDI L ++ RL + + + V+ ++ L GY+P YGARPLRR I
Sbjct: 765 DELSREDLDKIVDISLDKLNRRLAERRISIDVSAAAREWLARTGYDPVYGARPLRRLIQT 824
Query: 242 LLEDNLAEIILTGYIQVGDSVTMDCDSGGN 271
+ED LA +L G I V++D + G+
Sbjct: 825 TVEDQLARAMLAGTISDDQKVSVDMNQAGD 854
>sp|Q7NFE9|CLPB_GLOVI Chaperone protein ClpB OS=Gloeobacter violaceus (strain PCC 7421)
GN=clpB PE=3 SV=1
Length = 872
Score = 300 bits (768), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 145/271 (53%), Positives = 195/271 (71%), Gaps = 6/271 (2%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
++R+R G+ DPNRPI+SF+F GPTGVGKTELA ALA F + AMVRIDMSEYMEKH+
Sbjct: 590 AIQRSRAGLADPNRPIASFIFLGPTGVGKTELAKALASFLFDDENAMVRIDMSEYMEKHS 649
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG++ GGQLTEAVR RP++V+LFDEIEKAH DV NV+LQ+LDDGR+TD
Sbjct: 650 VSRLIGAPPGYVGYDEGGQLTEAVRRRPYAVVLFDEIEKAHNDVFNVLLQVLDDGRITDS 709
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIARESILGSD----QMERGVAEELRRRFRPEFLNRIDE 177
+G+T+D KN +IIMTSNIG I R + G+D QM V ++ FRPEFLNR+D+
Sbjct: 710 QGRTIDFKNAVIIMTSNIGSDAILR--LGGNDAYYEQMREEVMRAMQVHFRPEFLNRVDD 767
Query: 178 VIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRR 237
+I+FR L + QL IV + + + +RL + + L ++ ++E GY+P YGARPL+R
Sbjct: 768 IIIFRNLRRDQLAAIVKLQIARLEKRLADRKITLKLSEAAIDYIVEAGYDPVYGARPLKR 827
Query: 238 AIGRLLEDNLAEIILTGYIQVGDSVTMDCDS 268
AI L + LA +L G GD++ +D ++
Sbjct: 828 AIQNELVNPLARGLLKGDFNDGDTIFVDIEN 858
>sp|Q8XKG8|CLPB_CLOPE Chaperone protein ClpB OS=Clostridium perfringens (strain 13 / Type
A) GN=clpB PE=3 SV=1
Length = 866
Score = 300 bits (767), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 153/274 (55%), Positives = 197/274 (71%), Gaps = 3/274 (1%)
Query: 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK 64
RAR G++D +PI SF+F GPTGVGKTELA LA F S++ +VRIDMSEYMEKH VS+
Sbjct: 593 RARAGLKDERKPIGSFIFLGPTGVGKTELAKTLARNLFDSEDNIVRIDMSEYMEKHAVSR 652
Query: 65 FFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ 124
G PPGYVG+E GGQLTEAVR P+SVILFDEIEKAH DV N+ LQ+LDDGR+TD KG+
Sbjct: 653 LIGPPPGYVGYEEGGQLTEAVRRNPYSVILFDEIEKAHDDVFNLFLQILDDGRLTDNKGK 712
Query: 125 TVDLKNTIIIMTSNIGDS-VIARESILG-SDQMERGVAEELRRRFRPEFLNRIDEVIVFR 182
TVD KNTIIIMTSNIG ++ +S G D + V E++ RF+PEFLNR+D++I+FR
Sbjct: 713 TVDFKNTIIIMTSNIGSGYLLENKSGEGIEDDIRENVMNEMKLRFKPEFLNRVDDIIMFR 772
Query: 183 QLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242
L+ + +I+DI L+++ RL +N+ L VT K+ L EEGY+P YGARPL+R I +
Sbjct: 773 PLSSEGIKKIIDIFLRDVENRLRERNITLEVTDRAKEILAEEGYDPVYGARPLKRYISNV 832
Query: 243 LEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYR 276
LE +A+ I+ G I G SV + G +I+ R
Sbjct: 833 LETEIAKKIIAGEIYDG-SVALIDGVDGKIIVSR 865
>sp|Q7UBW5|CLPB_SHIFL Chaperone protein ClpB OS=Shigella flexneri GN=clpB PE=3 SV=2
Length = 857
Score = 300 bits (767), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 147/267 (55%), Positives = 192/267 (71%), Gaps = 1/267 (0%)
Query: 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT 61
+ R+R G+ DPNRPI SFLF GPTGVGKTEL ALA F S EAMVRIDMSE+MEKH+
Sbjct: 583 AIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDEAMVRIDMSEFMEKHS 642
Query: 62 VSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG 121
VS+ G+PPGYVG+E GG LTEAVR RP+SVIL DE+EKAH DV N++LQ+LDDGR+TDG
Sbjct: 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDG 702
Query: 122 KGQTVDLKNTIIIMTSNIGDSVIA-RESILGSDQMERGVAEELRRRFRPEFLNRIDEVIV 180
+G+TVD +NT++IMTSN+G +I R L M+ V + FRPEF+NRIDEV+V
Sbjct: 703 QGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVV 762
Query: 181 FRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240
F L + + I I LK +Y+RLE + E+ ++ K L E GY+P YGARPL+RAI
Sbjct: 763 FHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQ 822
Query: 241 RLLEDNLAEIILTGYIQVGDSVTMDCD 267
+ +E+ LA+ IL+G + G + ++ +
Sbjct: 823 QQIENPLAQQILSGELVPGKVIRLEVN 849
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,814,560
Number of Sequences: 539616
Number of extensions: 4481469
Number of successful extensions: 21196
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 618
Number of HSP's that attempted gapping in prelim test: 20475
Number of HSP's gapped (non-prelim): 1156
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)