Query 047225
Match_columns 287
No_of_seqs 131 out of 1631
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 08:59:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047225.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047225hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 2.2E-45 4.8E-50 341.6 29.5 272 2-273 506-781 (786)
2 CHL00095 clpC Clp protease ATP 100.0 2.2E-37 4.9E-42 299.9 32.1 272 2-273 524-808 (821)
3 PRK11034 clpA ATP-dependent Cl 100.0 4.7E-37 1E-41 291.5 29.5 271 2-276 473-745 (758)
4 TIGR03345 VI_ClpV1 type VI sec 100.0 6.5E-36 1.4E-40 288.6 28.9 265 2-267 581-851 (852)
5 TIGR02639 ClpA ATP-dependent C 100.0 9.2E-36 2E-40 285.7 28.7 259 3-265 470-730 (731)
6 TIGR03346 chaperone_ClpB ATP-d 100.0 1.7E-35 3.6E-40 287.6 30.0 269 2-270 580-849 (852)
7 PRK10865 protein disaggregatio 100.0 2.8E-35 6.1E-40 285.0 27.9 269 2-270 583-852 (857)
8 KOG1051 Chaperone HSP104 and r 100.0 5E-32 1.1E-36 255.6 20.5 265 2-271 577-857 (898)
9 TIGR00382 clpX endopeptidase C 99.9 7.1E-25 1.5E-29 194.9 22.6 220 18-252 117-390 (413)
10 PRK05342 clpX ATP-dependent pr 99.9 3.4E-24 7.3E-29 191.6 23.5 235 16-267 107-396 (412)
11 PF07724 AAA_2: AAA domain (Cd 99.9 1.9E-23 4.2E-28 165.9 12.7 151 15-177 1-170 (171)
12 PF05496 RuvB_N: Holliday junc 99.9 4.2E-22 9.1E-27 161.0 14.7 171 12-244 45-223 (233)
13 COG0466 Lon ATP-dependent Lon 99.9 1.5E-21 3.3E-26 178.4 18.2 212 2-252 340-563 (782)
14 COG3829 RocR Transcriptional r 99.9 6.5E-22 1.4E-26 176.5 14.6 215 3-244 258-477 (560)
15 PRK10787 DNA-binding ATP-depen 99.9 1.4E-20 3E-25 180.7 21.2 213 19-268 351-574 (784)
16 TIGR02974 phageshock_pspF psp 99.9 1.9E-21 4E-26 170.3 13.8 203 19-245 24-232 (329)
17 COG2204 AtoC Response regulato 99.9 2.2E-21 4.8E-26 173.1 13.1 204 18-244 165-372 (464)
18 TIGR00763 lon ATP-dependent pr 99.9 5.1E-20 1.1E-24 178.2 21.1 204 19-257 349-565 (775)
19 TIGR02881 spore_V_K stage V sp 99.8 5.5E-20 1.2E-24 156.8 17.1 200 8-260 34-252 (261)
20 COG3604 FhlA Transcriptional r 99.8 2E-20 4.3E-25 165.1 14.3 204 19-245 248-455 (550)
21 PRK11608 pspF phage shock prot 99.8 2.8E-20 6E-25 163.1 14.8 204 19-244 31-238 (326)
22 TIGR01817 nifA Nif-specific re 99.8 2.8E-20 6E-25 173.8 14.4 203 19-245 221-427 (534)
23 COG2256 MGS1 ATPase related to 99.8 8.1E-20 1.8E-24 157.5 15.6 160 17-240 48-211 (436)
24 TIGR02329 propionate_PrpR prop 99.8 5.8E-20 1.3E-24 169.3 14.8 201 19-244 237-448 (526)
25 COG1219 ClpX ATP-dependent pro 99.8 1.7E-18 3.7E-23 144.8 21.7 230 19-265 99-383 (408)
26 PRK15424 propionate catabolism 99.8 7.2E-20 1.6E-24 168.5 14.5 201 19-244 244-463 (538)
27 CHL00181 cbbX CbbX; Provisiona 99.8 2.9E-19 6.2E-24 153.5 16.8 192 9-253 52-261 (287)
28 PRK05022 anaerobic nitric oxid 99.8 1.3E-19 2.8E-24 168.0 15.6 205 19-246 212-420 (509)
29 KOG2004 Mitochondrial ATP-depe 99.8 2E-19 4.4E-24 164.1 15.4 212 2-253 428-652 (906)
30 COG1222 RPT1 ATP-dependent 26S 99.8 3.4E-19 7.5E-24 151.4 15.0 174 19-247 187-373 (406)
31 TIGR02880 cbbX_cfxQ probable R 99.8 1.2E-18 2.6E-23 149.8 18.4 183 16-252 57-259 (284)
32 PRK10820 DNA-binding transcrip 99.8 2.1E-19 4.6E-24 166.7 14.6 204 19-245 229-436 (520)
33 COG1221 PspF Transcriptional r 99.8 1.8E-19 4E-24 158.3 12.9 202 19-247 103-310 (403)
34 PRK05201 hslU ATP-dependent pr 99.8 2.8E-18 6E-23 151.1 18.6 152 89-265 249-421 (443)
35 KOG0745 Putative ATP-dependent 99.8 4.7E-18 1E-22 147.4 19.1 217 18-248 227-510 (564)
36 PRK11388 DNA-binding transcrip 99.8 6.2E-19 1.3E-23 168.2 14.8 200 19-244 350-552 (638)
37 PRK15429 formate hydrogenlyase 99.8 1.4E-18 3.1E-23 166.7 17.1 202 19-244 401-607 (686)
38 COG2255 RuvB Holliday junction 99.8 1.8E-18 4E-23 142.8 14.0 163 8-225 43-213 (332)
39 TIGR00390 hslU ATP-dependent p 99.8 1.1E-17 2.4E-22 147.3 19.1 152 89-265 247-419 (441)
40 TIGR02640 gas_vesic_GvpN gas v 99.8 1.7E-17 3.7E-22 141.3 18.0 149 19-196 23-197 (262)
41 PRK10923 glnG nitrogen regulat 99.8 3E-18 6.5E-23 158.2 14.1 204 19-245 163-370 (469)
42 TIGR01650 PD_CobS cobaltochela 99.8 1.2E-17 2.7E-22 143.5 15.8 195 19-243 66-281 (327)
43 PF00158 Sigma54_activat: Sigm 99.8 4.7E-18 1E-22 134.6 11.6 150 4-176 13-163 (168)
44 TIGR02915 PEP_resp_reg putativ 99.8 5.7E-18 1.2E-22 155.3 13.7 204 19-245 164-371 (445)
45 COG1223 Predicted ATPase (AAA+ 99.8 1.4E-17 3E-22 135.9 13.5 170 19-246 153-335 (368)
46 TIGR02902 spore_lonB ATP-depen 99.8 4E-17 8.7E-22 151.5 17.2 204 3-245 74-311 (531)
47 KOG0730 AAA+-type ATPase [Post 99.7 3.9E-17 8.4E-22 148.5 15.2 173 19-250 470-656 (693)
48 KOG0989 Replication factor C, 99.7 1.2E-17 2.5E-22 139.4 10.3 172 4-240 46-229 (346)
49 PLN03025 replication factor C 99.7 5.4E-17 1.2E-21 142.3 15.0 170 3-240 22-199 (319)
50 PRK11361 acetoacetate metaboli 99.7 4.7E-17 1E-21 149.8 14.4 204 19-245 168-375 (457)
51 PRK15115 response regulator Gl 99.7 4.8E-17 1E-21 149.2 14.1 203 19-244 159-365 (444)
52 PRK00080 ruvB Holliday junctio 99.7 1.8E-16 3.9E-21 139.5 16.5 171 14-242 48-226 (328)
53 PRK14956 DNA polymerase III su 99.7 1.6E-16 3.5E-21 143.0 16.1 188 4-241 28-225 (484)
54 COG3283 TyrR Transcriptional r 99.7 3.5E-16 7.6E-21 133.0 16.6 200 19-245 229-431 (511)
55 PF07728 AAA_5: AAA domain (dy 99.7 2.7E-17 5.9E-22 126.9 9.0 131 19-175 1-139 (139)
56 TIGR01818 ntrC nitrogen regula 99.7 1.7E-16 3.6E-21 146.4 15.7 205 19-246 159-367 (463)
57 PF01078 Mg_chelatase: Magnesi 99.7 5.6E-18 1.2E-22 136.2 4.9 162 18-188 23-206 (206)
58 CHL00195 ycf46 Ycf46; Provisio 99.7 5.2E-16 1.1E-20 141.7 17.4 169 19-247 261-445 (489)
59 PRK08084 DNA replication initi 99.7 5.3E-16 1.1E-20 130.1 14.5 163 19-242 47-213 (235)
60 TIGR00635 ruvB Holliday juncti 99.7 1.3E-15 2.8E-20 132.9 17.3 165 18-240 31-203 (305)
61 PRK03992 proteasome-activating 99.7 1.2E-15 2.6E-20 136.9 16.4 175 19-248 167-354 (389)
62 KOG0733 Nuclear AAA ATPase (VC 99.7 1.1E-15 2.4E-20 137.8 15.9 178 19-253 547-740 (802)
63 PRK08903 DnaA regulatory inact 99.7 9.4E-16 2E-20 128.2 14.5 160 18-243 43-204 (227)
64 PF00308 Bac_DnaA: Bacterial d 99.7 4.7E-16 1E-20 128.8 12.4 187 5-244 22-214 (219)
65 PRK07003 DNA polymerase III su 99.7 1.3E-15 2.7E-20 142.6 16.4 176 4-226 26-211 (830)
66 TIGR03420 DnaA_homol_Hda DnaA 99.7 6.9E-16 1.5E-20 128.8 13.1 163 19-243 40-206 (226)
67 PRK06893 DNA replication initi 99.7 1.4E-15 3E-20 127.1 14.1 163 19-242 41-207 (229)
68 PRK10365 transcriptional regul 99.7 1.3E-15 2.9E-20 139.5 15.2 203 19-244 164-370 (441)
69 PRK14949 DNA polymerase III su 99.7 2.6E-15 5.6E-20 142.9 16.6 187 4-240 26-222 (944)
70 PTZ00454 26S protease regulato 99.7 4.1E-15 8.9E-20 133.0 17.1 175 19-248 181-368 (398)
71 KOG2028 ATPase related to the 99.7 1.8E-15 3.9E-20 129.1 13.7 198 18-273 163-365 (554)
72 PHA02244 ATPase-like protein 99.7 8.2E-15 1.8E-19 127.5 18.1 145 19-188 121-265 (383)
73 PRK13341 recombination factor 99.7 3.2E-15 6.8E-20 142.4 16.9 169 18-243 53-222 (725)
74 PF07726 AAA_3: ATPase family 99.7 1.7E-16 3.6E-21 117.4 6.3 123 19-175 1-129 (131)
75 PRK08727 hypothetical protein; 99.7 4.3E-15 9.2E-20 124.4 15.6 164 18-243 42-209 (233)
76 KOG0738 AAA+-type ATPase [Post 99.7 3E-15 6.5E-20 128.6 14.7 183 14-252 242-438 (491)
77 KOG0742 AAA+-type ATPase [Post 99.7 1.7E-15 3.7E-20 130.9 13.1 180 14-240 381-586 (630)
78 PRK05642 DNA replication initi 99.7 3.9E-15 8.4E-20 124.7 15.0 167 16-244 44-214 (234)
79 PRK13342 recombination factor 99.7 5.9E-15 1.3E-19 133.7 17.3 159 19-242 38-200 (413)
80 KOG0733 Nuclear AAA ATPase (VC 99.7 4.2E-15 9.1E-20 134.1 15.7 181 19-256 225-420 (802)
81 PRK14960 DNA polymerase III su 99.6 5.2E-15 1.1E-19 137.1 16.2 187 4-240 25-221 (702)
82 PRK12323 DNA polymerase III su 99.6 3.7E-15 8E-20 137.7 14.9 187 5-240 27-227 (700)
83 PRK14958 DNA polymerase III su 99.6 4.4E-15 9.5E-20 136.9 14.9 189 4-242 26-224 (509)
84 COG1220 HslU ATP-dependent pro 99.6 9E-15 1.9E-19 123.6 15.2 152 91-267 252-424 (444)
85 PRK14962 DNA polymerase III su 99.6 5.5E-15 1.2E-19 134.9 14.9 174 5-226 25-209 (472)
86 TIGR00362 DnaA chromosomal rep 99.6 3E-15 6.6E-20 135.5 13.1 188 5-245 124-317 (405)
87 CHL00176 ftsH cell division pr 99.6 7.2E-15 1.6E-19 138.3 15.6 171 19-244 218-401 (638)
88 PRK07994 DNA polymerase III su 99.6 9.4E-15 2E-19 136.7 16.2 187 4-240 26-222 (647)
89 PRK13531 regulatory ATPase Rav 99.6 1.4E-14 3.1E-19 130.3 16.6 205 19-257 41-271 (498)
90 PRK14964 DNA polymerase III su 99.6 1.2E-14 2.7E-19 132.2 16.2 190 5-243 24-222 (491)
91 KOG0736 Peroxisome assembly fa 99.6 1.2E-14 2.6E-19 134.2 16.2 178 19-253 707-902 (953)
92 KOG0734 AAA+-type ATPase conta 99.6 4.6E-15 9.9E-20 132.0 12.5 169 19-244 339-519 (752)
93 PRK14952 DNA polymerase III su 99.6 2.2E-14 4.7E-19 133.5 17.6 190 4-242 23-223 (584)
94 PRK14957 DNA polymerase III su 99.6 1.8E-14 4E-19 132.8 16.8 190 4-243 26-225 (546)
95 PF05673 DUF815: Protein of un 99.6 1.9E-14 4.2E-19 118.2 15.0 192 15-243 50-246 (249)
96 PRK00149 dnaA chromosomal repl 99.6 5.5E-15 1.2E-19 135.5 13.2 189 3-244 134-328 (450)
97 PRK12402 replication factor C 99.6 2.1E-14 4.5E-19 127.1 16.4 174 4-225 25-216 (337)
98 PRK14087 dnaA chromosomal repl 99.6 7.8E-15 1.7E-19 133.6 13.7 193 3-244 127-325 (450)
99 PRK04195 replication factor C 99.6 9.3E-15 2E-19 134.9 14.3 160 17-242 39-203 (482)
100 PHA02544 44 clamp loader, smal 99.6 3E-14 6.5E-19 125.0 16.8 151 19-226 45-200 (316)
101 PRK14086 dnaA chromosomal repl 99.6 8.5E-15 1.8E-19 135.4 13.7 187 5-244 302-494 (617)
102 KOG2035 Replication factor C, 99.6 1.6E-14 3.5E-19 119.1 13.8 173 17-240 34-227 (351)
103 CHL00206 ycf2 Ycf2; Provisiona 99.6 9.4E-15 2E-19 146.3 14.8 185 19-247 1632-1858(2281)
104 PRK13407 bchI magnesium chelat 99.6 1.4E-14 3E-19 126.4 14.3 144 86-256 125-292 (334)
105 TIGR01241 FtsH_fam ATP-depende 99.6 1.4E-14 3.1E-19 134.2 15.1 168 19-244 90-273 (495)
106 COG3284 AcoR Transcriptional a 99.6 2.6E-15 5.6E-20 136.8 9.7 198 19-244 338-538 (606)
107 PRK14961 DNA polymerase III su 99.6 2.3E-14 5E-19 127.7 15.5 189 4-242 26-224 (363)
108 TIGR01243 CDC48 AAA family ATP 99.6 2.3E-14 5.1E-19 138.6 16.7 173 19-251 489-677 (733)
109 TIGR02903 spore_lon_C ATP-depe 99.6 3.7E-14 7.9E-19 133.8 17.5 175 19-226 177-386 (615)
110 PLN00020 ribulose bisphosphate 99.6 1.1E-13 2.3E-18 119.9 18.7 189 14-254 146-367 (413)
111 TIGR01242 26Sp45 26S proteasom 99.6 2.5E-14 5.5E-19 127.7 15.6 175 19-248 158-345 (364)
112 PTZ00361 26 proteosome regulat 99.6 1.7E-14 3.6E-19 130.1 14.4 173 19-247 219-405 (438)
113 PRK06645 DNA polymerase III su 99.6 3.5E-14 7.6E-19 130.2 16.8 189 4-243 31-234 (507)
114 TIGR00368 Mg chelatase-related 99.6 4.2E-14 9.2E-19 129.7 17.3 169 18-189 212-396 (499)
115 KOG0727 26S proteasome regulat 99.6 1.6E-14 3.4E-19 117.8 12.7 137 16-196 189-338 (408)
116 CHL00081 chlI Mg-protoporyphyr 99.6 1.9E-14 4E-19 125.9 14.1 142 87-255 142-307 (350)
117 KOG0991 Replication factor C, 99.6 5E-15 1.1E-19 119.3 9.6 174 2-240 35-213 (333)
118 PRK08691 DNA polymerase III su 99.6 2.3E-14 4.9E-19 133.9 15.2 190 4-243 26-225 (709)
119 PRK07764 DNA polymerase III su 99.6 3.5E-14 7.5E-19 136.9 16.6 189 4-243 25-226 (824)
120 PRK12422 chromosomal replicati 99.6 2.7E-14 5.8E-19 129.7 15.0 176 15-243 139-318 (445)
121 COG0714 MoxR-like ATPases [Gen 99.6 6.7E-15 1.4E-19 129.6 10.7 145 19-193 45-199 (329)
122 COG0606 Predicted ATPase with 99.6 4E-15 8.8E-20 131.7 9.3 163 18-189 199-384 (490)
123 TIGR02031 BchD-ChlD magnesium 99.6 3.1E-14 6.7E-19 133.7 15.3 191 9-228 10-219 (589)
124 PRK14088 dnaA chromosomal repl 99.6 2.5E-14 5.4E-19 130.1 14.0 187 5-244 119-311 (440)
125 TIGR03689 pup_AAA proteasome A 99.6 4.7E-14 1E-18 129.0 15.7 137 19-198 218-379 (512)
126 PF00004 AAA: ATPase family as 99.6 2.6E-14 5.6E-19 108.9 11.6 118 20-182 1-131 (132)
127 PRK14951 DNA polymerase III su 99.6 5E-14 1.1E-18 131.6 15.5 187 4-240 26-227 (618)
128 COG0464 SpoVK ATPases of the A 99.6 7.1E-14 1.5E-18 129.8 16.3 177 19-251 278-467 (494)
129 PRK14963 DNA polymerase III su 99.6 7.1E-14 1.5E-18 128.6 15.8 186 5-241 25-220 (504)
130 PTZ00112 origin recognition co 99.6 4.3E-14 9.4E-19 133.3 14.5 186 18-246 782-985 (1164)
131 PRK05563 DNA polymerase III su 99.6 7.7E-14 1.7E-18 130.3 16.0 189 4-242 26-224 (559)
132 TIGR02639 ClpA ATP-dependent C 99.6 8.2E-14 1.8E-18 134.6 16.5 181 19-248 205-403 (731)
133 KOG0739 AAA+-type ATPase [Post 99.6 1.5E-14 3.3E-19 120.4 9.8 192 10-257 159-361 (439)
134 PRK00440 rfc replication facto 99.6 1.2E-13 2.6E-18 121.3 15.8 161 3-225 26-193 (319)
135 PRK08451 DNA polymerase III su 99.6 2E-13 4.4E-18 125.4 17.3 190 4-242 24-222 (535)
136 TIGR03345 VI_ClpV1 type VI sec 99.6 2.2E-13 4.7E-18 132.8 18.3 184 18-250 209-410 (852)
137 COG1224 TIP49 DNA helicase TIP 99.6 2.3E-13 4.9E-18 116.0 16.0 116 91-246 293-408 (450)
138 KOG2170 ATPase of the AAA+ sup 99.5 6.5E-14 1.4E-18 116.9 12.2 191 12-224 106-318 (344)
139 PF06068 TIP49: TIP49 C-termin 99.5 1.1E-13 2.5E-18 119.4 14.0 111 91-240 280-390 (398)
140 TIGR02030 BchI-ChlI magnesium 99.5 6.4E-14 1.4E-18 122.5 12.6 143 86-255 128-294 (337)
141 PRK14959 DNA polymerase III su 99.5 1.2E-13 2.6E-18 128.4 15.1 162 18-226 39-211 (624)
142 PRK07133 DNA polymerase III su 99.5 1.2E-13 2.6E-18 130.2 15.2 190 3-241 27-222 (725)
143 PRK14969 DNA polymerase III su 99.5 1.2E-13 2.5E-18 128.2 14.3 189 4-242 26-224 (527)
144 PRK14965 DNA polymerase III su 99.5 1.6E-13 3.5E-18 128.7 15.2 189 5-242 27-224 (576)
145 KOG0728 26S proteasome regulat 99.5 8.9E-14 1.9E-18 113.3 11.6 140 15-198 180-332 (404)
146 PRK14953 DNA polymerase III su 99.5 1.7E-13 3.7E-18 125.7 14.9 189 4-242 26-224 (486)
147 PRK11034 clpA ATP-dependent Cl 99.5 2.1E-13 4.6E-18 130.6 16.1 188 19-248 209-407 (758)
148 PRK06620 hypothetical protein; 99.5 2.7E-13 5.9E-18 111.8 14.4 145 18-241 45-192 (214)
149 PRK05896 DNA polymerase III su 99.5 2.6E-13 5.6E-18 125.6 15.6 188 4-241 26-223 (605)
150 TIGR02442 Cob-chelat-sub cobal 99.5 2.7E-13 5.8E-18 128.7 16.0 199 8-238 18-276 (633)
151 COG1474 CDC6 Cdc6-related prot 99.5 2.9E-13 6.2E-18 119.8 15.1 193 14-244 40-243 (366)
152 TIGR02397 dnaX_nterm DNA polym 99.5 3.7E-13 8E-18 119.9 15.6 186 4-241 24-221 (355)
153 PRK09111 DNA polymerase III su 99.5 2.3E-13 5E-18 127.3 14.7 189 4-242 34-237 (598)
154 TIGR02928 orc1/cdc6 family rep 99.5 6.1E-13 1.3E-17 119.0 16.9 193 19-244 42-252 (365)
155 COG2812 DnaX DNA polymerase II 99.5 9.6E-14 2.1E-18 126.2 11.4 182 15-244 36-226 (515)
156 PRK14970 DNA polymerase III su 99.5 4.8E-13 1E-17 119.7 15.8 178 3-243 26-214 (367)
157 COG0593 DnaA ATPase involved i 99.5 3.3E-13 7.1E-18 119.4 14.1 190 3-246 99-294 (408)
158 PRK11331 5-methylcytosine-spec 99.5 8.4E-13 1.8E-17 118.0 16.6 149 19-189 196-364 (459)
159 PTZ00111 DNA replication licen 99.5 1.7E-14 3.8E-19 137.7 6.2 159 18-198 493-658 (915)
160 PRK09862 putative ATP-dependen 99.5 2.5E-13 5.4E-18 124.2 13.4 159 18-188 211-392 (506)
161 PRK14955 DNA polymerase III su 99.5 5.1E-13 1.1E-17 120.4 14.8 187 4-241 26-231 (397)
162 PRK06305 DNA polymerase III su 99.5 8E-13 1.7E-17 120.5 16.1 187 4-241 27-225 (451)
163 KOG0735 AAA+-type ATPase [Post 99.5 6.1E-13 1.3E-17 122.1 14.9 199 19-276 703-914 (952)
164 PRK09087 hypothetical protein; 99.5 3.8E-13 8.2E-18 111.9 12.5 156 16-243 43-200 (226)
165 PRK06647 DNA polymerase III su 99.5 9E-13 2E-17 122.8 16.3 189 3-242 25-224 (563)
166 COG2607 Predicted ATPase (AAA+ 99.5 2.8E-12 6.1E-17 103.9 16.7 193 14-244 82-279 (287)
167 PRK00411 cdc6 cell division co 99.5 2E-12 4.2E-17 116.9 17.8 184 19-240 57-256 (394)
168 KOG0731 AAA+-type ATPase conta 99.5 6.7E-13 1.5E-17 124.4 15.0 138 19-199 346-497 (774)
169 COG1239 ChlI Mg-chelatase subu 99.5 6.9E-13 1.5E-17 116.1 14.0 156 16-196 37-231 (423)
170 PRK14954 DNA polymerase III su 99.5 2.2E-12 4.8E-17 121.0 17.2 187 4-241 26-231 (620)
171 smart00350 MCM minichromosome 99.5 8.8E-13 1.9E-17 122.4 14.5 158 19-198 238-401 (509)
172 PRK04132 replication factor C 99.5 9.6E-13 2.1E-17 126.4 14.8 155 20-240 567-730 (846)
173 PRK14948 DNA polymerase III su 99.5 2E-12 4.3E-17 121.9 16.5 176 18-241 39-225 (620)
174 PRK10733 hflB ATP-dependent me 99.5 1.1E-12 2.4E-17 124.8 14.4 169 19-245 187-371 (644)
175 KOG0743 AAA+-type ATPase [Post 99.5 1.6E-12 3.4E-17 114.5 14.0 126 19-198 237-384 (457)
176 PRK14971 DNA polymerase III su 99.5 2.2E-12 4.7E-17 121.6 16.0 174 19-242 41-226 (614)
177 CHL00095 clpC Clp protease ATP 99.4 3.2E-12 6.9E-17 125.0 17.3 199 3-252 188-403 (821)
178 PF12775 AAA_7: P-loop contain 99.4 7.3E-13 1.6E-17 113.0 11.2 198 19-244 35-253 (272)
179 TIGR00678 holB DNA polymerase 99.4 3.3E-12 7.2E-17 103.6 14.2 157 18-225 15-181 (188)
180 KOG0737 AAA+-type ATPase [Post 99.4 1.1E-12 2.4E-17 112.5 11.6 179 19-253 129-318 (386)
181 KOG0480 DNA replication licens 99.4 1.7E-13 3.6E-18 124.3 6.6 241 18-286 379-629 (764)
182 PRK07940 DNA polymerase III su 99.4 2.8E-12 6.2E-17 114.6 14.3 139 18-194 37-186 (394)
183 KOG0726 26S proteasome regulat 99.4 2.6E-13 5.6E-18 112.9 6.4 134 19-195 221-367 (440)
184 TIGR01243 CDC48 AAA family ATP 99.4 5.1E-12 1.1E-16 122.5 16.5 175 19-251 214-401 (733)
185 PRK14950 DNA polymerase III su 99.4 5.3E-12 1.1E-16 119.0 15.7 189 5-242 27-225 (585)
186 PF14532 Sigma54_activ_2: Sigm 99.4 9.9E-14 2.1E-18 106.8 3.2 130 4-184 8-138 (138)
187 KOG0729 26S proteasome regulat 99.4 1.3E-12 2.7E-17 107.6 9.4 170 19-243 213-395 (435)
188 cd00009 AAA The AAA+ (ATPases 99.4 5E-12 1.1E-16 97.5 11.7 131 19-183 21-151 (151)
189 KOG0652 26S proteasome regulat 99.4 2.4E-12 5.2E-17 105.6 9.3 136 19-197 207-355 (424)
190 KOG0744 AAA+-type ATPase [Post 99.4 2.9E-12 6.3E-17 108.0 9.6 144 19-201 179-344 (423)
191 TIGR03346 chaperone_ClpB ATP-d 99.4 8.7E-12 1.9E-16 122.3 14.4 186 18-252 195-398 (852)
192 KOG1969 DNA replication checkp 99.4 2.1E-11 4.6E-16 112.5 15.7 166 19-243 328-512 (877)
193 PRK05707 DNA polymerase III su 99.4 1.4E-11 3.1E-16 107.8 13.9 146 14-196 19-177 (328)
194 KOG0740 AAA+-type ATPase [Post 99.4 4E-12 8.6E-17 112.6 10.2 184 8-250 180-375 (428)
195 PRK09112 DNA polymerase III su 99.4 1.2E-11 2.7E-16 109.0 12.9 173 5-225 34-230 (351)
196 TIGR03015 pepcterm_ATPase puta 99.3 5.1E-11 1.1E-15 102.1 16.2 189 19-244 45-244 (269)
197 PRK10865 protein disaggregatio 99.3 9.1E-12 2E-16 121.8 12.8 159 18-224 200-376 (857)
198 PF12774 AAA_6: Hydrolytic ATP 99.3 1.2E-10 2.7E-15 96.7 16.3 173 20-241 35-222 (231)
199 COG0542 clpA ATP-binding subun 99.3 3.5E-11 7.6E-16 113.8 14.4 189 18-255 192-398 (786)
200 COG0465 HflB ATP-dependent Zn 99.3 3.4E-11 7.5E-16 111.0 13.9 136 19-197 185-333 (596)
201 KOG0651 26S proteasome regulat 99.3 8.9E-12 1.9E-16 104.6 9.1 135 15-195 165-314 (388)
202 KOG0478 DNA replication licens 99.3 5E-13 1.1E-17 122.1 1.1 185 18-224 463-672 (804)
203 PRK13406 bchD magnesium chelat 99.3 2.9E-11 6.3E-16 112.9 12.3 193 17-240 25-224 (584)
204 smart00763 AAA_PrkA PrkA AAA d 99.3 1.4E-10 3E-15 101.3 15.3 112 88-224 235-348 (361)
205 COG0470 HolB ATPase involved i 99.3 3.9E-11 8.4E-16 105.5 11.7 126 20-193 27-177 (325)
206 PRK07399 DNA polymerase III su 99.3 8.3E-11 1.8E-15 102.4 13.3 155 4-196 14-194 (314)
207 COG1241 MCM2 Predicted ATPase 99.3 1.3E-12 2.9E-17 122.1 2.2 161 18-199 320-485 (682)
208 PF13177 DNA_pol3_delta2: DNA 99.2 6.6E-11 1.4E-15 93.4 10.0 131 19-185 21-162 (162)
209 COG5271 MDN1 AAA ATPase contai 99.2 4.6E-11 9.9E-16 117.8 10.2 151 19-197 1545-1703(4600)
210 KOG1942 DNA helicase, TBP-inte 99.2 3.8E-10 8.1E-15 94.3 13.9 111 91-240 298-409 (456)
211 KOG0735 AAA+-type ATPase [Post 99.2 5.5E-10 1.2E-14 103.1 16.2 178 18-250 432-628 (952)
212 PRK08058 DNA polymerase III su 99.2 2.3E-10 5E-15 100.7 13.0 154 4-195 16-180 (329)
213 PRK06964 DNA polymerase III su 99.2 1.3E-10 2.9E-15 101.7 11.0 72 88-195 131-202 (342)
214 KOG0732 AAA+-type ATPase conta 99.2 1.2E-10 2.5E-15 112.5 11.5 181 15-248 298-491 (1080)
215 KOG0990 Replication factor C, 99.2 4.4E-11 9.5E-16 100.9 7.5 158 19-240 64-231 (360)
216 PRK06871 DNA polymerase III su 99.2 2.3E-10 5E-15 99.6 12.1 142 18-196 25-178 (325)
217 TIGR00764 lon_rel lon-related 99.2 4.4E-10 9.5E-15 106.1 14.7 132 85-242 213-367 (608)
218 PRK07471 DNA polymerase III su 99.2 1.5E-10 3.2E-15 102.8 10.9 154 6-196 31-212 (365)
219 TIGR00602 rad24 checkpoint pro 99.2 7E-10 1.5E-14 104.3 15.6 66 167-242 256-324 (637)
220 PRK12377 putative replication 99.2 3.6E-11 7.9E-16 100.9 6.2 106 18-143 102-209 (248)
221 PRK08769 DNA polymerase III su 99.2 1.9E-10 4.1E-15 100.0 10.7 141 19-195 28-183 (319)
222 PRK07993 DNA polymerase III su 99.2 7.4E-10 1.6E-14 97.3 14.4 142 17-195 24-178 (334)
223 PF00493 MCM: MCM2/3/5 family 99.2 1.5E-11 3.2E-16 108.2 3.7 161 18-197 58-221 (331)
224 PRK05564 DNA polymerase III su 99.2 4.1E-10 8.9E-15 98.6 12.4 129 18-196 27-164 (313)
225 KOG0730 AAA+-type ATPase [Post 99.1 5.4E-10 1.2E-14 102.5 12.7 173 19-249 220-404 (693)
226 KOG2680 DNA helicase TIP49, TB 99.1 7.6E-10 1.6E-14 92.8 12.4 118 91-247 290-407 (454)
227 PRK08116 hypothetical protein; 99.1 1.6E-10 3.5E-15 98.6 8.7 108 19-144 116-225 (268)
228 PRK06090 DNA polymerase III su 99.1 5.3E-10 1.1E-14 97.1 11.7 140 18-195 26-178 (319)
229 PF13173 AAA_14: AAA domain 99.1 4.1E-10 8.9E-15 85.4 9.7 124 19-189 4-127 (128)
230 PRK06835 DNA replication prote 99.1 6.2E-11 1.3E-15 103.6 5.1 108 18-144 184-293 (329)
231 COG4650 RtcR Sigma54-dependent 99.1 7E-10 1.5E-14 92.9 10.4 199 19-242 210-422 (531)
232 PRK08181 transposase; Validate 99.1 2.1E-10 4.7E-15 97.4 6.9 104 19-144 108-213 (269)
233 smart00382 AAA ATPases associa 99.1 8.4E-10 1.8E-14 84.2 9.6 92 19-110 4-99 (148)
234 PF01695 IstB_IS21: IstB-like 99.1 1E-10 2.3E-15 93.6 4.3 104 19-144 49-154 (178)
235 COG5271 MDN1 AAA ATPase contai 99.1 2.3E-09 4.9E-14 106.4 14.1 151 19-197 890-1047(4600)
236 PF10431 ClpB_D2-small: C-term 99.1 1.8E-09 3.8E-14 75.0 9.3 81 184-264 1-81 (81)
237 PRK13765 ATP-dependent proteas 99.0 2.9E-09 6.3E-14 100.4 13.4 115 87-224 224-351 (637)
238 KOG2227 Pre-initiation complex 99.0 2.4E-09 5.2E-14 94.8 11.7 191 18-245 176-378 (529)
239 PF05729 NACHT: NACHT domain 99.0 4.2E-09 9.1E-14 83.1 12.1 144 19-198 2-164 (166)
240 PRK08699 DNA polymerase III su 99.0 1.3E-09 2.8E-14 95.4 9.9 142 18-195 22-183 (325)
241 KOG0736 Peroxisome assembly fa 99.0 1E-08 2.2E-13 95.6 15.8 170 18-242 432-609 (953)
242 PRK06526 transposase; Provisio 99.0 3.3E-10 7.2E-15 95.7 5.5 104 19-144 100-205 (254)
243 PRK07952 DNA replication prote 99.0 8.8E-10 1.9E-14 92.4 7.2 106 19-143 101-208 (244)
244 KOG0481 DNA replication licens 99.0 2.8E-10 6.1E-15 101.3 3.7 249 18-286 365-625 (729)
245 PF13401 AAA_22: AAA domain; P 99.0 1.7E-09 3.6E-14 82.2 7.5 109 19-140 6-126 (131)
246 KOG1514 Origin recognition com 99.0 8.4E-09 1.8E-13 95.4 12.9 195 19-251 424-633 (767)
247 PF03215 Rad17: Rad17 cell cyc 98.9 4.4E-08 9.5E-13 90.6 16.7 75 165-246 193-268 (519)
248 PRK06921 hypothetical protein; 98.9 4.1E-09 8.9E-14 89.8 8.8 104 18-144 118-229 (266)
249 KOG0477 DNA replication licens 98.9 1.1E-10 2.5E-15 105.9 -0.9 241 18-286 483-743 (854)
250 PF07693 KAP_NTPase: KAP famil 98.9 1.2E-07 2.7E-12 83.3 17.2 133 90-244 173-320 (325)
251 COG1484 DnaC DNA replication p 98.9 3.5E-09 7.7E-14 89.5 6.6 105 19-144 107-213 (254)
252 PF01637 Arch_ATPase: Archaeal 98.8 2.5E-08 5.3E-13 83.1 10.3 185 3-225 8-224 (234)
253 PRK09183 transposase/IS protei 98.8 1.5E-08 3.3E-13 86.1 9.0 105 19-144 104-210 (259)
254 PRK05917 DNA polymerase III su 98.8 7.1E-08 1.5E-12 82.4 12.9 129 18-185 20-155 (290)
255 KOG0741 AAA+-type ATPase [Post 98.8 1.2E-08 2.6E-13 91.6 7.8 179 19-248 258-457 (744)
256 KOG0482 DNA replication licens 98.8 1.1E-08 2.3E-13 91.4 7.2 210 18-252 376-622 (721)
257 PRK08939 primosomal protein Dn 98.8 4.2E-08 9.2E-13 85.2 9.5 105 19-144 158-265 (306)
258 COG3267 ExeA Type II secretory 98.8 4.4E-07 9.6E-12 74.9 14.6 197 19-254 53-257 (269)
259 KOG0479 DNA replication licens 98.8 3.2E-08 7E-13 89.7 8.5 158 18-197 335-498 (818)
260 KOG1970 Checkpoint RAD17-RFC c 98.7 2.5E-07 5.5E-12 83.7 13.8 190 12-244 105-318 (634)
261 PF05621 TniB: Bacterial TniB 98.7 3.5E-07 7.6E-12 78.0 14.0 200 3-244 46-267 (302)
262 PRK07132 DNA polymerase III su 98.7 3.3E-07 7.1E-12 79.2 14.0 140 4-195 6-160 (299)
263 TIGR02688 conserved hypothetic 98.7 4.2E-07 9.1E-12 80.9 14.7 142 19-191 211-361 (449)
264 PRK07276 DNA polymerase III su 98.7 9E-08 2E-12 82.0 10.2 150 4-194 12-172 (290)
265 PRK05818 DNA polymerase III su 98.7 2.7E-07 5.9E-12 77.3 12.1 128 19-185 9-148 (261)
266 PRK15455 PrkA family serine pr 98.7 2E-07 4.3E-12 85.8 12.2 90 91-199 257-348 (644)
267 PF00910 RNA_helicase: RNA hel 98.6 1.3E-07 2.8E-12 69.3 7.1 93 20-138 1-106 (107)
268 PF00931 NB-ARC: NB-ARC domain 98.6 3E-07 6.5E-12 79.4 9.5 155 3-197 5-170 (287)
269 KOG0741 AAA+-type ATPase [Post 98.5 1.5E-06 3.3E-11 78.4 12.5 136 15-194 536-683 (744)
270 PRK04296 thymidine kinase; Pro 98.5 1.5E-06 3.2E-11 70.6 10.0 96 19-114 4-103 (190)
271 KOG1808 AAA ATPase containing 98.5 2.6E-07 5.7E-12 94.4 6.5 147 19-193 442-595 (1856)
272 PF06309 Torsin: Torsin; Inte 98.5 4.1E-07 8.9E-12 67.5 5.7 76 11-95 48-127 (127)
273 PF03969 AFG1_ATPase: AFG1-lik 98.4 1E-06 2.2E-11 78.2 8.8 113 14-146 60-174 (362)
274 PHA00729 NTP-binding motif con 98.4 2.7E-06 5.8E-11 70.1 9.4 23 19-41 19-41 (226)
275 PHA02774 E1; Provisional 98.4 3.1E-06 6.8E-11 78.1 10.5 98 18-142 435-535 (613)
276 cd01120 RecA-like_NTPases RecA 98.3 2.3E-06 5E-11 67.0 7.8 38 20-57 2-39 (165)
277 COG1373 Predicted ATPase (AAA+ 98.3 5.6E-06 1.2E-10 74.7 10.6 120 19-191 39-161 (398)
278 PF08298 AAA_PrkA: PrkA AAA do 98.3 1.6E-05 3.5E-10 69.3 12.6 108 92-224 236-345 (358)
279 PHA01747 putative ATP-dependen 98.2 2.2E-05 4.8E-10 68.3 11.8 149 19-191 192-352 (425)
280 PRK06581 DNA polymerase III su 98.2 0.00022 4.8E-09 59.0 16.8 140 17-197 15-161 (263)
281 COG1618 Predicted nucleotide k 98.2 6.2E-05 1.3E-09 58.1 12.6 30 19-48 7-36 (179)
282 PF00448 SRP54: SRP54-type pro 98.2 9.1E-06 2E-10 66.1 8.3 114 19-142 3-128 (196)
283 PF13604 AAA_30: AAA domain; P 98.2 8.7E-06 1.9E-10 66.3 8.1 102 19-140 20-131 (196)
284 cd01131 PilT Pilus retraction 98.2 1.3E-05 2.7E-10 65.5 8.7 95 18-116 2-99 (198)
285 PF13191 AAA_16: AAA ATPase do 98.1 1.5E-06 3.2E-11 69.8 3.2 53 3-56 9-63 (185)
286 COG1485 Predicted ATPase [Gene 98.1 1.7E-05 3.7E-10 68.6 9.4 112 14-145 63-176 (367)
287 KOG1968 Replication factor C, 98.1 1.3E-05 2.9E-10 78.0 8.8 169 20-244 360-534 (871)
288 PRK10536 hypothetical protein; 98.1 1.9E-05 4.2E-10 66.2 8.6 36 91-140 178-213 (262)
289 PRK14974 cell division protein 98.1 4.8E-05 1E-09 66.9 10.8 99 15-114 139-249 (336)
290 PF03266 NTPase_1: NTPase; In 98.0 3.1E-05 6.8E-10 61.4 8.7 25 19-43 1-25 (168)
291 PF13207 AAA_17: AAA domain; P 98.0 6.2E-06 1.3E-10 61.5 4.4 23 19-41 1-23 (121)
292 TIGR01420 pilT_fam pilus retra 98.0 2.3E-05 5.1E-10 69.5 8.6 97 17-116 122-220 (343)
293 PRK12723 flagellar biosynthesi 98.0 3.2E-05 6.9E-10 69.2 9.4 113 19-142 176-300 (388)
294 COG2804 PulE Type II secretory 98.0 7.5E-05 1.6E-09 67.8 11.6 97 15-117 256-353 (500)
295 PF12780 AAA_8: P-loop contain 98.0 2.9E-05 6.4E-10 66.1 8.6 150 15-200 29-213 (268)
296 COG5245 DYN1 Dynein, heavy cha 98.0 4.8E-06 1E-10 83.0 3.8 155 19-198 1496-1659(3164)
297 PHA02624 large T antigen; Prov 98.0 3.5E-05 7.7E-10 71.6 8.8 126 6-184 421-562 (647)
298 PF13337 Lon_2: Putative ATP-d 98.0 6.5E-05 1.4E-09 67.6 10.2 141 19-190 210-358 (457)
299 cd01124 KaiC KaiC is a circadi 97.9 3.7E-05 8.1E-10 61.9 7.7 36 20-55 2-37 (187)
300 COG2805 PilT Tfp pilus assembl 97.9 4.4E-05 9.5E-10 64.8 7.7 100 16-119 124-226 (353)
301 PRK13695 putative NTPase; Prov 97.9 0.0002 4.4E-09 57.1 11.3 24 19-42 2-25 (174)
302 PRK11889 flhF flagellar biosyn 97.9 8.7E-05 1.9E-09 66.0 9.8 95 19-115 243-348 (436)
303 cd01129 PulE-GspE PulE/GspE Th 97.9 6.9E-05 1.5E-09 63.9 8.9 93 18-116 81-174 (264)
304 TIGR02533 type_II_gspE general 97.9 0.00014 3.1E-09 67.3 11.2 94 18-117 243-337 (486)
305 PLN02674 adenylate kinase 97.9 0.00013 2.7E-09 61.3 9.7 35 18-57 32-66 (244)
306 PRK05703 flhF flagellar biosyn 97.9 0.00016 3.4E-09 65.9 10.9 113 19-142 223-345 (424)
307 PRK07261 topology modulation p 97.8 0.00029 6.3E-09 56.1 11.2 23 19-41 2-24 (171)
308 KOG2383 Predicted ATPase [Gene 97.8 7.6E-05 1.6E-09 65.6 8.2 121 13-146 111-240 (467)
309 PF05970 PIF1: PIF1-like helic 97.8 7.1E-05 1.5E-09 67.0 8.3 94 19-114 24-127 (364)
310 PF01583 APS_kinase: Adenylyls 97.8 2.4E-05 5.3E-10 60.8 4.6 90 19-119 4-102 (156)
311 COG3854 SpoIIIAA ncharacterize 97.8 9.9E-05 2.2E-09 60.3 8.2 92 18-116 138-243 (308)
312 KOG3347 Predicted nucleotide k 97.8 1.4E-05 3.1E-10 60.6 2.9 40 15-59 5-44 (176)
313 PF04665 Pox_A32: Poxvirus A32 97.8 0.00098 2.1E-08 55.6 14.0 137 19-194 15-167 (241)
314 KOG2543 Origin recognition com 97.8 0.00033 7.2E-09 61.3 11.5 52 3-57 15-67 (438)
315 PRK05800 cobU adenosylcobinami 97.8 0.00024 5.2E-09 56.5 10.0 80 19-101 3-88 (170)
316 PRK00771 signal recognition pa 97.8 0.00014 3.1E-09 66.2 9.7 97 15-112 94-200 (437)
317 PF14516 AAA_35: AAA-like doma 97.8 0.00063 1.4E-08 60.1 13.5 49 6-57 23-71 (331)
318 TIGR01618 phage_P_loop phage n 97.8 6.4E-05 1.4E-09 62.0 6.7 20 19-38 14-33 (220)
319 TIGR01425 SRP54_euk signal rec 97.8 0.00016 3.5E-09 65.4 9.7 96 18-114 101-209 (429)
320 PF02562 PhoH: PhoH-like prote 97.8 0.00014 3E-09 59.3 8.4 36 91-140 121-156 (205)
321 KOG2228 Origin recognition com 97.8 0.00016 3.4E-09 62.4 9.0 150 19-197 51-219 (408)
322 COG4555 NatA ABC-type Na+ tran 97.8 0.00035 7.6E-09 56.1 10.3 45 19-63 30-74 (245)
323 KOG1051 Chaperone HSP104 and r 97.8 0.00011 2.4E-09 71.4 8.9 138 18-199 209-365 (898)
324 PRK08118 topology modulation p 97.8 2.5E-05 5.5E-10 61.9 3.8 31 19-52 3-33 (167)
325 COG1419 FlhF Flagellar GTP-bin 97.8 0.00033 7.2E-09 62.2 10.9 111 18-140 204-324 (407)
326 cd03216 ABC_Carb_Monos_I This 97.8 7.5E-05 1.6E-09 59.0 6.3 94 19-115 28-127 (163)
327 TIGR02858 spore_III_AA stage I 97.8 0.00023 5.1E-09 60.7 9.7 95 18-115 112-218 (270)
328 cd03223 ABCD_peroxisomal_ALDP 97.7 0.00056 1.2E-08 54.1 11.3 96 19-115 29-136 (166)
329 PLN03210 Resistant to P. syrin 97.7 0.00059 1.3E-08 70.1 14.2 26 17-42 207-232 (1153)
330 COG0529 CysC Adenylylsulfate k 97.7 9.8E-05 2.1E-09 57.9 6.6 94 15-120 22-124 (197)
331 cd00267 ABC_ATPase ABC (ATP-bi 97.7 0.00023 5E-09 55.7 8.5 95 19-115 27-125 (157)
332 PRK14722 flhF flagellar biosyn 97.7 0.00031 6.7E-09 62.5 10.0 84 18-103 138-229 (374)
333 COG4178 ABC-type uncharacteriz 97.7 0.00035 7.5E-09 65.4 10.6 39 90-139 534-573 (604)
334 COG1116 TauB ABC-type nitrate/ 97.7 0.00025 5.5E-09 58.8 8.5 26 19-44 31-56 (248)
335 cd03115 SRP The signal recogni 97.7 0.00021 4.6E-09 56.9 8.0 39 19-57 2-40 (173)
336 TIGR02538 type_IV_pilB type IV 97.7 0.00049 1.1E-08 65.1 11.7 95 17-117 316-411 (564)
337 PRK00131 aroK shikimate kinase 97.7 6E-05 1.3E-09 59.9 4.7 28 19-49 6-33 (175)
338 PF09848 DUF2075: Uncharacteri 97.7 0.00019 4.1E-09 64.0 8.1 96 19-115 3-117 (352)
339 TIGR02653 Lon_rel_chp conserve 97.7 0.00032 7E-09 65.8 9.7 139 19-191 218-368 (675)
340 PF00437 T2SE: Type II/IV secr 97.7 7.5E-05 1.6E-09 64.0 5.3 92 18-116 128-221 (270)
341 PRK10867 signal recognition pa 97.6 0.00038 8.1E-09 63.3 9.8 97 18-114 101-210 (433)
342 PRK10436 hypothetical protein; 97.6 0.00028 6.1E-09 64.8 9.0 96 16-117 217-313 (462)
343 PRK05986 cob(I)alamin adenolsy 97.6 0.00031 6.6E-09 56.4 8.1 113 17-140 22-158 (191)
344 cd00561 CobA_CobO_BtuR ATP:cor 97.6 0.00036 7.7E-09 54.5 8.1 111 19-140 4-138 (159)
345 cd01121 Sms Sms (bacterial rad 97.6 0.00051 1.1E-08 61.4 10.1 84 18-101 83-170 (372)
346 PF01443 Viral_helicase1: Vira 97.6 0.00013 2.8E-09 61.0 5.9 87 20-114 1-87 (234)
347 PF05272 VirE: Virulence-assoc 97.6 0.00022 4.8E-09 58.0 6.9 94 18-140 53-150 (198)
348 PRK03846 adenylylsulfate kinas 97.6 0.00024 5.1E-09 58.0 6.9 44 12-56 20-63 (198)
349 PRK03839 putative kinase; Prov 97.6 8.1E-05 1.8E-09 59.7 4.1 23 19-41 2-24 (180)
350 cd02019 NK Nucleoside/nucleoti 97.6 0.00013 2.8E-09 48.8 4.4 22 20-41 2-23 (69)
351 cd01128 rho_factor Transcripti 97.6 0.00017 3.6E-09 60.9 6.1 26 19-44 18-43 (249)
352 PRK13947 shikimate kinase; Pro 97.6 8.9E-05 1.9E-09 58.9 4.2 29 19-50 3-31 (171)
353 PRK00625 shikimate kinase; Pro 97.6 8.9E-05 1.9E-09 59.1 4.2 30 19-51 2-31 (173)
354 TIGR02525 plasmid_TraJ plasmid 97.6 0.00041 8.9E-09 61.9 8.7 96 18-117 150-251 (372)
355 TIGR01447 recD exodeoxyribonuc 97.5 0.0003 6.5E-09 66.6 8.1 27 89-115 259-285 (586)
356 PF13671 AAA_33: AAA domain; P 97.5 7.5E-05 1.6E-09 57.3 3.4 22 20-41 2-23 (143)
357 PRK06696 uridine kinase; Valid 97.5 0.00012 2.6E-09 60.9 4.8 46 13-59 19-64 (223)
358 PF00519 PPV_E1_C: Papillomavi 97.5 0.00021 4.6E-09 62.9 6.4 128 6-183 252-382 (432)
359 TIGR01448 recD_rel helicase, p 97.5 0.00032 6.9E-09 68.2 8.3 90 19-115 340-442 (720)
360 cd01130 VirB11-like_ATPase Typ 97.5 0.00021 4.4E-09 57.8 5.9 93 19-116 27-124 (186)
361 TIGR02237 recomb_radB DNA repa 97.5 0.00024 5.2E-09 58.4 6.4 37 19-55 14-50 (209)
362 TIGR00959 ffh signal recogniti 97.5 0.00077 1.7E-08 61.3 9.9 97 15-112 98-207 (428)
363 TIGR01613 primase_Cterm phage/ 97.5 0.0026 5.5E-08 55.6 12.8 123 18-182 77-202 (304)
364 cd03246 ABCC_Protease_Secretio 97.5 0.0016 3.4E-08 51.9 10.6 95 19-115 30-141 (173)
365 PF13479 AAA_24: AAA domain 97.5 0.00027 5.8E-09 58.4 6.3 83 19-110 5-89 (213)
366 PRK14737 gmk guanylate kinase; 97.5 0.00096 2.1E-08 53.8 9.4 23 19-41 6-28 (186)
367 PF13238 AAA_18: AAA domain; P 97.5 9.3E-05 2E-09 55.5 3.3 22 20-41 1-22 (129)
368 cd00464 SK Shikimate kinase (S 97.5 0.00011 2.4E-09 57.1 3.8 23 19-41 1-23 (154)
369 PRK06995 flhF flagellar biosyn 97.5 0.00086 1.9E-08 61.7 10.0 86 18-104 257-349 (484)
370 cd02027 APSK Adenosine 5'-phos 97.5 0.00028 6E-09 54.9 5.9 34 20-53 2-35 (149)
371 PRK14532 adenylate kinase; Pro 97.5 0.00013 2.7E-09 59.0 4.1 23 19-41 2-24 (188)
372 PRK00889 adenylylsulfate kinas 97.5 0.00039 8.4E-09 55.5 6.9 37 19-55 6-42 (175)
373 TIGR02524 dot_icm_DotB Dot/Icm 97.5 0.00065 1.4E-08 60.5 8.9 97 17-117 134-238 (358)
374 cd00046 DEXDc DEAD-like helica 97.5 0.00063 1.4E-08 51.2 7.7 24 19-42 2-25 (144)
375 PRK12724 flagellar biosynthesi 97.5 0.00053 1.2E-08 61.7 8.2 114 19-141 225-346 (432)
376 TIGR03499 FlhF flagellar biosy 97.5 0.0003 6.6E-09 60.6 6.5 38 19-56 196-235 (282)
377 cd03222 ABC_RNaseL_inhibitor T 97.5 0.00055 1.2E-08 54.8 7.4 87 19-114 27-115 (177)
378 PRK05541 adenylylsulfate kinas 97.4 0.00023 4.9E-09 56.9 5.2 34 19-52 9-42 (176)
379 TIGR02768 TraA_Ti Ti-type conj 97.4 0.00056 1.2E-08 66.8 8.6 91 19-114 370-464 (744)
380 PRK08533 flagellar accessory p 97.4 0.00097 2.1E-08 55.7 9.0 37 19-55 26-62 (230)
381 cd00227 CPT Chloramphenicol (C 97.4 0.00013 2.9E-09 58.2 3.7 23 19-41 4-26 (175)
382 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00015 3.2E-09 58.3 4.0 22 20-41 2-23 (183)
383 PRK06067 flagellar accessory p 97.4 0.00065 1.4E-08 56.9 8.0 38 19-56 27-64 (234)
384 PRK10416 signal recognition pa 97.4 0.00053 1.1E-08 60.1 7.6 39 18-56 115-153 (318)
385 cd03247 ABCC_cytochrome_bd The 97.4 0.0022 4.7E-08 51.3 10.7 95 19-115 30-143 (178)
386 PF10923 DUF2791: P-loop Domai 97.4 0.0079 1.7E-07 54.3 15.1 144 91-247 241-394 (416)
387 PF00485 PRK: Phosphoribulokin 97.4 0.0023 4.9E-08 52.0 10.9 29 19-47 1-29 (194)
388 PRK13949 shikimate kinase; Pro 97.4 0.00016 3.5E-09 57.5 3.9 23 19-41 3-25 (169)
389 PRK06217 hypothetical protein; 97.4 0.00018 4E-09 57.9 4.3 23 19-41 3-25 (183)
390 cd03228 ABCC_MRP_Like The MRP 97.4 0.0021 4.5E-08 51.1 10.3 95 19-115 30-141 (171)
391 PRK10875 recD exonuclease V su 97.4 0.00053 1.2E-08 65.1 7.9 26 90-115 266-291 (615)
392 PRK11823 DNA repair protein Ra 97.4 0.00098 2.1E-08 61.2 9.4 83 19-101 82-168 (446)
393 PRK04841 transcriptional regul 97.4 0.0023 5.1E-08 64.1 12.9 23 19-41 34-56 (903)
394 COG1102 Cmk Cytidylate kinase 97.4 0.00018 4E-09 55.5 3.7 28 19-49 2-29 (179)
395 PRK14530 adenylate kinase; Pro 97.4 0.0002 4.4E-09 59.2 4.3 23 19-41 5-27 (215)
396 PRK13851 type IV secretion sys 97.4 0.00035 7.7E-09 61.7 5.9 94 18-116 163-260 (344)
397 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.4 0.00044 9.6E-09 53.3 5.8 86 19-115 28-115 (144)
398 PRK05480 uridine/cytidine kina 97.4 0.00034 7.4E-09 57.5 5.3 39 15-56 5-43 (209)
399 PF13245 AAA_19: Part of AAA d 97.3 0.00027 5.8E-09 48.1 3.8 23 19-41 12-35 (76)
400 TIGR00767 rho transcription te 97.3 0.00067 1.5E-08 60.6 7.3 26 19-44 170-195 (415)
401 PRK12726 flagellar biosynthesi 97.3 0.001 2.3E-08 59.0 8.4 95 18-114 207-312 (407)
402 TIGR02788 VirB11 P-type DNA tr 97.3 0.0011 2.3E-08 58.1 8.4 94 18-116 145-242 (308)
403 cd02021 GntK Gluconate kinase 97.3 0.00022 4.8E-09 55.3 3.8 22 20-41 2-23 (150)
404 PRK06762 hypothetical protein; 97.3 0.00024 5.1E-09 56.2 3.9 32 19-53 4-35 (166)
405 PRK12727 flagellar biosynthesi 97.3 0.0019 4.1E-08 59.8 10.2 87 18-104 351-443 (559)
406 PRK06547 hypothetical protein; 97.3 0.00029 6.4E-09 56.1 4.4 27 14-41 13-39 (172)
407 cd03230 ABC_DR_subfamily_A Thi 97.3 0.0014 3E-08 52.2 8.3 28 19-46 28-55 (173)
408 PF13086 AAA_11: AAA domain; P 97.3 0.0004 8.7E-09 57.6 5.4 23 19-41 19-41 (236)
409 PF08433 KTI12: Chromatin asso 97.3 0.00046 1E-08 59.0 5.7 35 20-54 4-38 (270)
410 PRK14531 adenylate kinase; Pro 97.3 0.00029 6.3E-09 56.7 4.3 23 19-41 4-26 (183)
411 TIGR02012 tigrfam_recA protein 97.3 0.0011 2.4E-08 57.9 8.1 82 19-102 57-146 (321)
412 COG0563 Adk Adenylate kinase a 97.3 0.00022 4.7E-09 57.1 3.4 23 19-41 2-24 (178)
413 COG0703 AroK Shikimate kinase 97.3 0.00022 4.8E-09 56.1 3.3 28 19-49 4-31 (172)
414 cd01428 ADK Adenylate kinase ( 97.3 0.00025 5.3E-09 57.5 3.6 22 20-41 2-23 (194)
415 cd02020 CMPK Cytidine monophos 97.3 0.00029 6.2E-09 54.2 3.8 22 20-41 2-23 (147)
416 COG1643 HrpA HrpA-like helicas 97.3 0.0029 6.4E-08 61.8 11.4 115 19-144 67-210 (845)
417 cd03238 ABC_UvrA The excision 97.3 0.0021 4.5E-08 51.4 8.9 20 19-38 23-42 (176)
418 PRK09270 nucleoside triphospha 97.3 0.0004 8.7E-09 58.0 5.0 45 12-57 29-74 (229)
419 TIGR01313 therm_gnt_kin carboh 97.3 0.00024 5.2E-09 56.0 3.4 22 20-41 1-22 (163)
420 cd03214 ABC_Iron-Siderophores_ 97.3 0.002 4.4E-08 51.6 8.8 95 19-115 27-142 (180)
421 cd02028 UMPK_like Uridine mono 97.3 0.00031 6.7E-09 56.3 4.0 39 20-58 2-40 (179)
422 cd03215 ABC_Carb_Monos_II This 97.3 0.0012 2.7E-08 53.0 7.6 29 19-47 28-56 (182)
423 PRK13900 type IV secretion sys 97.3 0.00057 1.2E-08 60.2 6.0 94 18-116 161-259 (332)
424 PF10443 RNA12: RNA12 protein; 97.3 0.0011 2.4E-08 59.3 7.8 50 2-58 4-55 (431)
425 PRK09376 rho transcription ter 97.3 0.00055 1.2E-08 60.9 5.7 25 19-43 171-195 (416)
426 COG4618 ArpD ABC-type protease 97.2 0.0034 7.3E-08 57.2 10.6 39 18-57 363-401 (580)
427 PTZ00088 adenylate kinase 1; P 97.2 0.00033 7.1E-09 58.4 4.1 23 19-41 8-30 (229)
428 TIGR02782 TrbB_P P-type conjug 97.2 0.0007 1.5E-08 58.8 6.3 91 19-116 134-228 (299)
429 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00037 8.1E-09 56.1 4.3 23 19-41 5-27 (188)
430 COG0552 FtsY Signal recognitio 97.2 0.0015 3.3E-08 56.5 8.0 100 13-113 136-247 (340)
431 PRK12608 transcription termina 97.2 0.00058 1.3E-08 60.5 5.6 25 19-43 135-159 (380)
432 KOG3595 Dyneins, heavy chain [ 97.2 0.0024 5.1E-08 66.6 10.8 153 19-200 129-289 (1395)
433 PRK13946 shikimate kinase; Pro 97.2 0.00041 9E-09 55.9 4.3 29 19-50 12-40 (184)
434 PRK13948 shikimate kinase; Pro 97.2 0.00045 9.8E-09 55.5 4.4 31 19-52 12-42 (182)
435 PTZ00202 tuzin; Provisional 97.2 0.0019 4.1E-08 58.3 8.6 33 19-54 288-320 (550)
436 cd00544 CobU Adenosylcobinamid 97.2 0.0011 2.4E-08 52.6 6.5 77 20-99 2-83 (169)
437 PRK13833 conjugal transfer pro 97.2 0.00074 1.6E-08 59.1 6.0 90 19-116 146-239 (323)
438 PRK13889 conjugal transfer rel 97.2 0.0015 3.2E-08 65.2 8.7 92 19-115 364-459 (988)
439 PRK13894 conjugal transfer ATP 97.2 0.00077 1.7E-08 59.0 6.1 90 19-116 150-243 (319)
440 PRK14528 adenylate kinase; Pro 97.2 0.00043 9.3E-09 55.9 4.2 23 19-41 3-25 (186)
441 PRK05057 aroK shikimate kinase 97.2 0.00044 9.5E-09 55.1 4.2 23 19-41 6-28 (172)
442 COG1936 Predicted nucleotide k 97.2 0.00032 7E-09 54.8 3.3 22 19-41 2-23 (180)
443 PRK07667 uridine kinase; Provi 97.2 0.00056 1.2E-08 55.6 4.9 39 19-57 19-57 (193)
444 PRK06731 flhF flagellar biosyn 97.2 0.0022 4.8E-08 54.7 8.6 95 18-114 76-181 (270)
445 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.0011 2.4E-08 54.1 6.6 20 19-38 30-49 (200)
446 COG0541 Ffh Signal recognition 97.2 0.0065 1.4E-07 54.4 11.7 118 14-142 98-227 (451)
447 PRK02496 adk adenylate kinase; 97.2 0.00042 9E-09 55.8 4.0 23 19-41 3-25 (184)
448 PRK08233 hypothetical protein; 97.2 0.00053 1.2E-08 54.8 4.5 24 19-42 5-28 (182)
449 COG4240 Predicted kinase [Gene 97.2 0.027 5.8E-07 46.3 14.1 196 12-226 46-262 (300)
450 PLN02200 adenylate kinase fami 97.2 0.00054 1.2E-08 57.4 4.7 34 19-57 45-78 (234)
451 TIGR03574 selen_PSTK L-seryl-t 97.2 0.00041 8.9E-09 58.7 4.0 34 20-53 2-35 (249)
452 cd02023 UMPK Uridine monophosp 97.2 0.00053 1.2E-08 55.8 4.5 36 20-57 2-37 (198)
453 PRK14721 flhF flagellar biosyn 97.2 0.004 8.8E-08 56.4 10.4 24 18-41 192-215 (420)
454 PRK14733 coaE dephospho-CoA ki 97.2 0.0043 9.3E-08 50.7 9.6 27 14-41 4-30 (204)
455 PRK03731 aroL shikimate kinase 97.2 0.00054 1.2E-08 54.4 4.3 28 19-49 4-31 (171)
456 COG4608 AppF ABC-type oligopep 97.2 0.0015 3.2E-08 55.0 7.0 96 19-115 41-154 (268)
457 PRK13764 ATPase; Provisional 97.2 0.00089 1.9E-08 63.2 6.3 33 19-51 259-291 (602)
458 TIGR00455 apsK adenylylsulfate 97.1 0.0017 3.6E-08 52.3 7.2 37 19-55 20-56 (184)
459 PRK14738 gmk guanylate kinase; 97.1 0.00048 1E-08 56.6 4.0 30 10-40 7-36 (206)
460 TIGR00750 lao LAO/AO transport 97.1 0.002 4.3E-08 56.2 8.0 37 18-54 35-71 (300)
461 KOG0058 Peptide exporter, ABC 97.1 0.0012 2.6E-08 62.4 6.9 29 16-44 493-521 (716)
462 COG4088 Predicted nucleotide k 97.1 0.00035 7.6E-09 56.2 2.9 24 20-43 4-27 (261)
463 TIGR03819 heli_sec_ATPase heli 97.1 0.0042 9.1E-08 55.0 10.0 94 18-116 179-277 (340)
464 PRK14700 recombination factor 97.1 0.0014 3E-08 56.1 6.6 67 167-244 23-89 (300)
465 cd03213 ABCG_EPDR ABCG transpo 97.1 0.0015 3.2E-08 53.1 6.6 29 19-47 37-67 (194)
466 TIGR00554 panK_bact pantothena 97.1 0.00095 2.1E-08 57.5 5.7 44 13-57 59-104 (290)
467 TIGR00235 udk uridine kinase. 97.1 0.0007 1.5E-08 55.6 4.5 24 19-42 8-31 (207)
468 PF03029 ATP_bind_1: Conserved 97.1 0.00055 1.2E-08 57.5 3.8 37 22-58 1-37 (238)
469 KOG3928 Mitochondrial ribosome 97.1 0.011 2.5E-07 52.4 12.0 32 10-41 172-204 (461)
470 PTZ00293 thymidine kinase; Pro 97.1 0.0042 9.1E-08 50.8 8.8 93 19-115 6-102 (211)
471 cd02025 PanK Pantothenate kina 97.1 0.00069 1.5E-08 56.2 4.4 38 20-57 2-41 (220)
472 PRK04040 adenylate kinase; Pro 97.1 0.00068 1.5E-08 54.8 4.2 24 19-42 4-27 (188)
473 TIGR01351 adk adenylate kinase 97.1 0.00056 1.2E-08 56.3 3.8 22 20-41 2-23 (210)
474 PRK13826 Dtr system oriT relax 97.1 0.0019 4.1E-08 64.9 8.0 92 19-115 399-494 (1102)
475 PF04851 ResIII: Type III rest 97.1 0.0037 8E-08 49.7 8.4 25 19-43 27-51 (184)
476 TIGR00708 cobA cob(I)alamin ad 97.1 0.0093 2E-07 47.2 10.2 33 19-51 7-39 (173)
477 cd03229 ABC_Class3 This class 97.0 0.0032 6.8E-08 50.4 7.8 29 19-47 28-56 (178)
478 PRK00279 adk adenylate kinase; 97.0 0.00075 1.6E-08 55.8 4.3 23 19-41 2-24 (215)
479 PRK09354 recA recombinase A; P 97.0 0.0047 1E-07 54.5 9.4 82 19-102 62-151 (349)
480 COG5008 PilU Tfp pilus assembl 97.0 0.0022 4.7E-08 53.8 6.8 94 18-117 128-226 (375)
481 COG2884 FtsE Predicted ATPase 97.0 0.0048 1E-07 49.2 8.4 30 19-48 30-59 (223)
482 PRK09435 membrane ATPase/prote 97.0 0.0019 4.1E-08 56.8 6.8 39 14-53 54-92 (332)
483 PRK15453 phosphoribulokinase; 97.0 0.0011 2.5E-08 56.4 5.2 39 19-57 7-45 (290)
484 PF13521 AAA_28: AAA domain; P 97.0 0.00057 1.2E-08 53.8 3.2 21 20-40 2-22 (163)
485 TIGR00150 HI0065_YjeE ATPase, 97.0 0.00071 1.5E-08 51.2 3.5 24 19-42 24-47 (133)
486 TIGR02322 phosphon_PhnN phosph 97.0 0.0006 1.3E-08 54.5 3.4 24 19-42 3-26 (179)
487 TIGR00064 ftsY signal recognit 97.0 0.0012 2.6E-08 56.6 5.3 96 18-113 73-180 (272)
488 COG5192 BMS1 GTP-binding prote 97.0 0.0054 1.2E-07 56.4 9.5 86 19-116 71-162 (1077)
489 PRK10078 ribose 1,5-bisphospho 97.0 0.00053 1.2E-08 55.3 2.9 23 19-41 4-26 (186)
490 COG3842 PotA ABC-type spermidi 97.0 0.0006 1.3E-08 60.0 3.3 28 19-46 33-60 (352)
491 PRK00300 gmk guanylate kinase; 97.0 0.00083 1.8E-08 55.0 4.0 23 19-41 7-29 (205)
492 PRK14527 adenylate kinase; Pro 97.0 0.00079 1.7E-08 54.5 3.8 23 19-41 8-30 (191)
493 TIGR00416 sms DNA repair prote 97.0 0.0024 5.1E-08 58.8 7.2 84 18-101 95-182 (454)
494 PF13555 AAA_29: P-loop contai 97.0 0.0012 2.7E-08 42.7 3.8 26 19-44 25-50 (62)
495 PRK05439 pantothenate kinase; 97.0 0.0014 2.9E-08 57.1 5.3 45 12-57 82-128 (311)
496 PLN02165 adenylate isopentenyl 97.0 0.0009 1.9E-08 58.5 4.1 23 19-41 45-67 (334)
497 cd03227 ABC_Class2 ABC-type Cl 96.9 0.0041 8.8E-08 49.0 7.5 24 19-42 23-46 (162)
498 KOG0922 DEAH-box RNA helicase 96.9 0.0039 8.4E-08 58.3 8.3 29 19-47 68-97 (674)
499 COG3839 MalK ABC-type sugar tr 96.9 0.00066 1.4E-08 59.4 3.2 28 19-46 31-58 (338)
500 smart00072 GuKc Guanylate kina 96.9 0.02 4.3E-07 46.1 11.6 23 19-41 4-26 (184)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-45 Score=341.62 Aligned_cols=272 Identities=58% Similarity=0.936 Sum_probs=257.9
Q ss_pred chhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhH
Q 047225 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQL 81 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
+|++.|.++.+|++|.++++|.||+|+|||.+|++||..++++...++.+|||+|.+..+++.++|.++||+||.+.+.+
T Consensus 506 aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~L 585 (786)
T COG0542 506 AIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQL 585 (786)
T ss_pred HHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccch
Confidence 68999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhcc----CCchHHHH
Q 047225 82 TEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESI----LGSDQMER 157 (287)
Q Consensus 82 ~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~----~~~~~~~~ 157 (287)
.++++..|++||+||||++++|++.+.|++++++|+++++.|+.+++.|++||+|||.+...+..... ..+..+.+
T Consensus 586 TEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~ 665 (786)
T COG0542 586 TEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKE 665 (786)
T ss_pred hHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888766522 22566788
Q ss_pred HHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHH
Q 047225 158 GVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRR 237 (287)
Q Consensus 158 ~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~ 237 (287)
.+...+++.|+|+|++|+|.+|.|.|++.+++.+|+..++.+...++..++..+.+++++.++++...|.+.+|+|++++
T Consensus 666 ~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R 745 (786)
T COG0542 666 AVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRR 745 (786)
T ss_pred HHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHH
Confidence 88899999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCEEEEEEcCCccEE
Q 047225 238 AIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVI 273 (287)
Q Consensus 238 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 273 (287)
.|++.+...+++.++.+++.++..+.+.+++.+..+
T Consensus 746 ~Iq~~i~~~La~~iL~g~~~~~~~v~v~~~~~~~~~ 781 (786)
T COG0542 746 AIQQEIEDPLADEILFGKIEDGGTVKVDVDDEKIKF 781 (786)
T ss_pred HHHHHHHHHHHHHHHhcccCCCcEEEEEecCceEEE
Confidence 999999999999999999999999999999744443
No 2
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=2.2e-37 Score=299.91 Aligned_cols=272 Identities=62% Similarity=1.007 Sum_probs=248.8
Q ss_pred chhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhH
Q 047225 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQL 81 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
++.++|.++..|++|.++++|+||+|||||++|+.||+.+......++.++++++.+...+..++|.++||.|+.+.+.+
T Consensus 524 ~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l 603 (821)
T CHL00095 524 AIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQL 603 (821)
T ss_pred HHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchH
Confidence 46778889999999998899999999999999999999998777899999999999888889999999999999998899
Q ss_pred HHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhh-ccCC---------
Q 047225 82 TEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARE-SILG--------- 151 (287)
Q Consensus 82 ~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~-~~~~--------- 151 (287)
.+.++..|++|++|||+|++++++++.|++++++|.++++.|+.+++.+++||+|||.+...+... ..+|
T Consensus 604 ~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~ 683 (821)
T CHL00095 604 TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLS 683 (821)
T ss_pred HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999988755432 2222
Q ss_pred ---chHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCC
Q 047225 152 ---SDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNP 228 (287)
Q Consensus 152 ---~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~ 228 (287)
+..+...+...++..|+|+|++|+|.+|.|.|++.+++.+|+...+.+...++..++..+.++++++++|+...|.+
T Consensus 684 ~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~ 763 (821)
T CHL00095 684 EKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNP 763 (821)
T ss_pred cccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCC
Confidence 34456667778888999999999999999999999999999999999988888888889999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEEEcCCccEE
Q 047225 229 SYGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVI 273 (287)
Q Consensus 229 ~~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 273 (287)
.+|+|++++++++.+..++++.++.+.+.+++++.+++++++.+.
T Consensus 764 ~~GAR~l~r~i~~~i~~~l~~~~l~~~~~~g~~v~~~~~~~~~~~ 808 (821)
T CHL00095 764 LYGARPLRRAIMRLLEDPLAEEVLSFKIKPGDIIIVDVNDEKEVK 808 (821)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHhCccCCCCEEEEEEeCCCcEE
Confidence 999999999999999999999999999999999999998877543
No 3
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=4.7e-37 Score=291.50 Aligned_cols=271 Identities=41% Similarity=0.735 Sum_probs=242.4
Q ss_pred chhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhH
Q 047225 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQL 81 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
++...+.++..+++|.++++|+||||||||.+|+.+|+.+ +.+++.++|+++.+...+..++|.++++.|+...+.+
T Consensus 473 ~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L 549 (758)
T PRK11034 473 AIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLL 549 (758)
T ss_pred HHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CCCcEEeechhhcccccHHHHcCCCCCcccccccchH
Confidence 3566778888899999899999999999999999999999 5789999999999887889999999999999888889
Q ss_pred HHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch--HHHHHH
Q 047225 82 TEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD--QMERGV 159 (287)
Q Consensus 82 ~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~--~~~~~~ 159 (287)
.+.+...+++|+||||+|++++++++.|++++++|.++...|+.+++.+++||+|||.+....... .+|+. +....+
T Consensus 550 ~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~-~~g~~~~~~~~~~ 628 (758)
T PRK11034 550 TDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERK-SIGLIHQDNSTDA 628 (758)
T ss_pred HHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhc-ccCcccchhhHHH
Confidence 999999999999999999999999999999999999998889999999999999999886654332 23432 112334
Q ss_pred HHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHH
Q 047225 160 AEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 160 ~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
...+++.|.|+|++|+|.+|.|+|++.+++.+|+...+.++..++...+..+.++++++++|+...|.+.+|+|++++.|
T Consensus 629 ~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i 708 (758)
T PRK11034 629 MEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLAEKGYDRAMGARPMARVI 708 (758)
T ss_pred HHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHHHhCCCCCCCCchHHHHH
Confidence 45677899999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCEEEEEEcCCccEEEEE
Q 047225 240 GRLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYR 276 (287)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 276 (287)
++.+...+++.++.+.+.+++.+.+.+++++..+.+.
T Consensus 709 ~~~l~~~la~~il~~~~~~~~~~~v~~~~~~~~~~~~ 745 (758)
T PRK11034 709 QDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYG 745 (758)
T ss_pred HHHHHHHHHHHHHhCcccCCCEEEEEEECCceEEEEE
Confidence 9999999999999999999999999998877655554
No 4
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=6.5e-36 Score=288.62 Aligned_cols=265 Identities=38% Similarity=0.650 Sum_probs=241.0
Q ss_pred chhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhH
Q 047225 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQL 81 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
++.++|.++..|++|.++++|+||+|||||.+|++||+.++.....++.++|++|.+...+..++|.++||.|+.+.+.+
T Consensus 581 ~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L 660 (852)
T TIGR03345 581 RIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVL 660 (852)
T ss_pred HHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchH
Confidence 46778889999999999999999999999999999999998777889999999999999999999999999999998899
Q ss_pred HHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccC-----CchHHH
Q 047225 82 TEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESIL-----GSDQME 156 (287)
Q Consensus 82 ~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~-----~~~~~~ 156 (287)
.+.++..+++||+|||++++++++++.|++++++|.+.++.|+.+++.+++||+|||.+...+.+...- .+..+.
T Consensus 661 ~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~ 740 (852)
T TIGR03345 661 TEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALL 740 (852)
T ss_pred HHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988766543111 134556
Q ss_pred HHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhc-CcEEEeChhHHHHHHHhccCCCCCchhH
Q 047225 157 RGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAK-NMELTVTHTFKKKLIEEGYNPSYGARPL 235 (287)
Q Consensus 157 ~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~-~~~~~i~~~~~~~l~~~~~~~~~~~r~l 235 (287)
..+...++..|+|+|++|++ +|.|.|++.+++.+|+...+.+...++..+ +..+.++++++++|+...+.+.+|+|.+
T Consensus 741 ~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L 819 (852)
T TIGR03345 741 EALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNI 819 (852)
T ss_pred HHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHH
Confidence 77888889999999999995 999999999999999999999887777665 7889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCEEEEEEc
Q 047225 236 RRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267 (287)
Q Consensus 236 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (287)
++.|++.+..++++.++.+........+|.++
T Consensus 820 ~r~Ie~~i~~~la~~~l~~~~~~~~~~~~~~~ 851 (852)
T TIGR03345 820 DAILNQTLLPELSRQILERLAAGEPIERIHLD 851 (852)
T ss_pred HHHHHHHHHHHHHHHHHhChhcCCCeeEEEEe
Confidence 99999999999999999999998888887764
No 5
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=9.2e-36 Score=285.73 Aligned_cols=259 Identities=48% Similarity=0.825 Sum_probs=235.6
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHH
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLT 82 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
+.+.|.++..|++|.++++|+||+|||||++|+.+|+.+ +.+++.+++++|.+......++|.++++.|+...+.+.
T Consensus 470 i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~ 546 (731)
T TIGR02639 470 IKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---GVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLT 546 (731)
T ss_pred HHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---cCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHH
Confidence 556778888999999899999999999999999999999 57899999999998888899999999999999988999
Q ss_pred HHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCc--hHHHHHHH
Q 047225 83 EAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGS--DQMERGVA 160 (287)
Q Consensus 83 ~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~--~~~~~~~~ 160 (287)
+.++..+++|++|||+|++++++++.|++++++|.++.+.|+.+++.+++||+|||.+...+... .+|+ ......+.
T Consensus 547 ~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~-~~~f~~~~~~~~~~ 625 (731)
T TIGR02639 547 EAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKP-PIGFGSENVESKSD 625 (731)
T ss_pred HHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhc-cCCcchhhhHHHHH
Confidence 99999999999999999999999999999999999998889999999999999999987655432 1332 23334567
Q ss_pred HHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 161 EELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
..+++.|.|+|++|++.+|.|.|++.+++.+|+...+.+....+...+..+.++++++++|+...|.+.+|+|.++++++
T Consensus 626 ~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~ 705 (731)
T TIGR02639 626 KAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYLAEKGYDEEFGARPLARVIQ 705 (731)
T ss_pred HHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHHHHhCCCcccCchHHHHHHH
Confidence 77888999999999999999999999999999999999988888877889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEEE
Q 047225 241 RLLEDNLAEIILTGYIQVGDSVTMD 265 (287)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (287)
+.+...+++.++.+.+.+++++.+.
T Consensus 706 ~~~~~~l~~~~l~~~~~~~~~~~~~ 730 (731)
T TIGR02639 706 EEIKKPLSDEILFGKLKKGGSVKVD 730 (731)
T ss_pred HHhHHHHHHHHHhCcCCCCCEEEEe
Confidence 9999999999999999999988775
No 6
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=1.7e-35 Score=287.62 Aligned_cols=269 Identities=56% Similarity=0.935 Sum_probs=243.8
Q ss_pred chhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhH
Q 047225 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQL 81 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
++.+++.++..|++|.++++|+||+|||||++|+.|++.+.....+++.++|+++.+......++|.++++.|+.+.+.+
T Consensus 580 ~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l 659 (852)
T TIGR03346 580 AIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQL 659 (852)
T ss_pred HHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCcccccHH
Confidence 46777888999999998999999999999999999999998888899999999998888888999999999999998899
Q ss_pred HHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhc-cCCchHHHHHHH
Q 047225 82 TEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARES-ILGSDQMERGVA 160 (287)
Q Consensus 82 ~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~-~~~~~~~~~~~~ 160 (287)
.+.+...+++||+|||++++++++++.|++++++|.+..+.|+.+++.+++||+|||.+...+.... ...+..+...+.
T Consensus 660 ~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~ 739 (852)
T TIGR03346 660 TEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVM 739 (852)
T ss_pred HHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHH
Confidence 9999999999999999999999999999999999999998899999999999999999877554321 011455566677
Q ss_pred HHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 161 EELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
+.+++.|+|+|++|++.++.|.|++.+++.+|+...+......+...+..+.++++++++|+...|.+.+|+|++++.++
T Consensus 740 ~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~ 819 (852)
T TIGR03346 740 EVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQ 819 (852)
T ss_pred HHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHH
Confidence 77889999999999999999999999999999999999888888777778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEEEEcCCc
Q 047225 241 RLLEDNLAEIILTGYIQVGDSVTMDCDSGG 270 (287)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 270 (287)
+.+...+++.++.+++.+++++.|.+++++
T Consensus 820 ~~i~~~l~~~~l~~~~~~~~~~~~~~~~~~ 849 (852)
T TIGR03346 820 REIENPLAKKILAGEVADGDTIVVDVEGGR 849 (852)
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEeeCCE
Confidence 999999999999999999999999996543
No 7
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=2.8e-35 Score=285.04 Aligned_cols=269 Identities=54% Similarity=0.912 Sum_probs=240.4
Q ss_pred chhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhH
Q 047225 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQL 81 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
++.+++.++.+|++|.++++|+||+|||||++|++|++.+.....+++.++|+++.+......++|.++++.|+...+.+
T Consensus 583 ~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l 662 (857)
T PRK10865 583 AIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYL 662 (857)
T ss_pred HHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHH
Confidence 46778888999999988899999999999999999999997777789999999998777788899999999999888888
Q ss_pred HHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhh-ccCCchHHHHHHH
Q 047225 82 TEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARE-SILGSDQMERGVA 160 (287)
Q Consensus 82 ~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~-~~~~~~~~~~~~~ 160 (287)
.+.++..++++|+|||++++++++++.|++++++|.+..+.|+.+++.+++||+|||.+...+... ....+..+...+.
T Consensus 663 ~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~ 742 (857)
T PRK10865 663 TEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVL 742 (857)
T ss_pred HHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHH
Confidence 888888899999999999999999999999999999998889999999999999999986654332 1112444566666
Q ss_pred HHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 161 EELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
...++.|.|+|++|++.++.|.|++.+++.+|+...+.+...++...+..+.++++++++|+...|.+.+|+|+++++|+
T Consensus 743 ~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~ 822 (857)
T PRK10865 743 GVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQ 822 (857)
T ss_pred HHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHH
Confidence 77888999999999999999999999999999999999887777666677899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEEEEcCCc
Q 047225 241 RLLEDNLAEIILTGYIQVGDSVTMDCDSGG 270 (287)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 270 (287)
+.+...+++.++.+.+.+++++.+.+++++
T Consensus 823 ~~i~~~la~~iL~g~~~~~~~~~~~~~~~~ 852 (857)
T PRK10865 823 QQIENPLAQQILSGELVPGKVIRLEVNDDR 852 (857)
T ss_pred HHHHHHHHHHHHcCcCCCCCEEEEEEECCE
Confidence 999999999999999999999999997644
No 8
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-32 Score=255.64 Aligned_cols=265 Identities=51% Similarity=0.803 Sum_probs=239.9
Q ss_pred chhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhH
Q 047225 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQL 81 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
+|.+||.+++.| +|..+++|.||+|+|||.+|++||..++++...++.+|+++|.+ +.+++|.+++|+|+++.+.+
T Consensus 577 AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e---vskligsp~gyvG~e~gg~L 652 (898)
T KOG1051|consen 577 AIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQL 652 (898)
T ss_pred HHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh---hhhccCCCcccccchhHHHH
Confidence 688999999999 77779999999999999999999999999999999999999997 88999999999999999999
Q ss_pred HHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhcc------------
Q 047225 82 TEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESI------------ 149 (287)
Q Consensus 82 ~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~------------ 149 (287)
.+.++..|+.||+|||||++++++++.|++++++|++.++.|+.|++.|++||+|+|.+...+.....
T Consensus 653 teavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~ 732 (898)
T KOG1051|consen 653 TEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKR 732 (898)
T ss_pred HHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999998776555432
Q ss_pred CCchHHHHHHHHHHH----hcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 150 LGSDQMERGVAEELR----RRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~----~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
.-+......+.+..+ ..|.++|++|++..+.|.|++.+++.+++...+.+...++...+....+.+.+.+.++...
T Consensus 733 ~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~ 812 (898)
T KOG1051|consen 733 GSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEIEKRLEERELLLLVTDRVDDKVLFKG 812 (898)
T ss_pred hhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHhhhhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcC
Confidence 113334455555666 8899999999999999999999999999999998888888776667789999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEEEcCCcc
Q 047225 226 YNPSYGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGN 271 (287)
Q Consensus 226 ~~~~~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 271 (287)
|.+.+++|.+++.|++.+...++..++ .++.++....|...+..+
T Consensus 813 ~d~~ygAr~ikr~i~~~~~~~la~~~l-~ei~~~~~~~i~~~~~~~ 857 (898)
T KOG1051|consen 813 YDFDYGARPIKRSIEERFENRLAEALL-GEVEDGLTERILVADGWS 857 (898)
T ss_pred cChHHHhhHHHHHHHHHHHHHHhhhhe-eeecCCceEEEEeccccc
Confidence 999999999999999999999999999 999999999999877443
No 9
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.94 E-value=7.1e-25 Score=194.90 Aligned_cols=220 Identities=28% Similarity=0.421 Sum_probs=164.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHH-------hCCc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVR-------HRPH 90 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 90 (287)
.+++|+||||||||++|+.+|..+ +.++..++++.+. .+++.|.+....+...+. ....
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l---~~pf~~~da~~L~-----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~ 182 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARIL---NVPFAIADATTLT-----------EAGYVGEDVENILLKLLQAADYDVEKAQK 182 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhc---CCCeEEechhhcc-----------ccccccccHHHHHHHHHHhCcccHHhccc
Confidence 479999999999999999999988 5677777765432 234555543333433332 2344
Q ss_pred EEEEEcCcccccH--------------HHHHHHHHhhcCceeec---CCCceeeccceEEEEeecC---------Cchhh
Q 047225 91 SVILFDEIEKAHR--------------DVLNVMLQLLDDGRVTD---GKGQTVDLKNTIIIMTSNI---------GDSVI 144 (287)
Q Consensus 91 ~il~iDeid~~~~--------------~~~~~L~~~l~~~~~~~---~~g~~i~~~~~~iI~t~n~---------~~~~~ 144 (287)
++|||||+|++++ ++|..|+++++ |.+.. ..|+.+++.++++|.|+|. +...+
T Consensus 183 gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i 261 (413)
T TIGR00382 183 GIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKI 261 (413)
T ss_pred ceEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHH
Confidence 7999999999987 69999999995 66553 3578888899999999998 22211
Q ss_pred hh----hccCCchH------------HHHHHHHHH-HhcCChhHHhccCceEEeCCCCHHHHHHHHHHH----HHHHHHH
Q 047225 145 AR----ESILGSDQ------------MERGVAEEL-RRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIM----LKEIYER 203 (287)
Q Consensus 145 ~~----~~~~~~~~------------~~~~~~~~~-~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~----l~~~~~~ 203 (287)
.. ...+||.. +.....+.+ +..|.|+|+.|++.++.|.|++.+++.+|+... +.++...
T Consensus 262 ~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~ 341 (413)
T TIGR00382 262 IKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQAL 341 (413)
T ss_pred HHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12244421 111122333 445999999999999999999999999999875 4455555
Q ss_pred HHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 047225 204 LEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNLAEIIL 252 (287)
Q Consensus 204 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~~~~~~ 252 (287)
+...+..+.++++++++|+..++.+.+|+|.+++.+++.+...+.+...
T Consensus 342 l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p~ 390 (413)
T TIGR00382 342 FKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLPS 390 (413)
T ss_pred hccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCCC
Confidence 5556889999999999999999999999999999999999988876643
No 10
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.93 E-value=3.4e-24 Score=191.64 Aligned_cols=235 Identities=26% Similarity=0.367 Sum_probs=167.6
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHH-------HHhC
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEA-------VRHR 88 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 88 (287)
+..+++|+||||||||++|+.+|..+ +.+++.++++.+.. .+|.|......+... +...
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~id~~~l~~-----------~gyvG~d~e~~l~~l~~~~~~~~~~a 172 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARIL---DVPFAIADATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKA 172 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHh---CCCceecchhhccc-----------CCcccchHHHHHHHHHHhccccHHHc
Confidence 34579999999999999999999988 67888888876543 133333222222221 2234
Q ss_pred CcEEEEEcCcccccH--------------HHHHHHHHhhcCceeecC--CCceeeccceEEEEeecC-----Cc----hh
Q 047225 89 PHSVILFDEIEKAHR--------------DVLNVMLQLLDDGRVTDG--KGQTVDLKNTIIIMTSNI-----GD----SV 143 (287)
Q Consensus 89 ~~~il~iDeid~~~~--------------~~~~~L~~~l~~~~~~~~--~g~~i~~~~~~iI~t~n~-----~~----~~ 143 (287)
.++||||||+|++++ ++|..|+++|+......+ .|+..+..++++|.|+|. ++ ..
T Consensus 173 ~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~ 252 (412)
T PRK05342 173 QRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEK 252 (412)
T ss_pred CCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHH
Confidence 568999999999975 489999999986554443 356666667777777777 11 11
Q ss_pred h----hhhccCCchHH-------------HHHH-HHHHH-hcCChhHHhccCceEEeCCCCHHHHHHHHH----HHHHHH
Q 047225 144 I----ARESILGSDQM-------------ERGV-AEELR-RRFRPEFLNRIDEVIVFRQLNKMQLMEIVD----IMLKEI 200 (287)
Q Consensus 144 ~----~~~~~~~~~~~-------------~~~~-~~~~~-~~~~~~l~~r~~~~i~~~~~~~~~~~~il~----~~l~~~ 200 (287)
. .....+||... ...+ .+.+. ..|.|+|+.|++.++.|.|++.+++.+|+. ..++++
T Consensus 253 ~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~ 332 (412)
T PRK05342 253 IIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQY 332 (412)
T ss_pred HHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 11133454311 1111 12223 348999999999999999999999999998 456666
Q ss_pred HHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEEEc
Q 047225 201 YERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267 (287)
Q Consensus 201 ~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (287)
...+...+..+.++++++++|+..++...+|+|.+++.+++.+...+.+.....+ ...+.|+.+
T Consensus 333 ~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p~~~~---~~~v~I~~~ 396 (412)
T PRK05342 333 QKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELPSRED---VEKVVITKE 396 (412)
T ss_pred HHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhccccCC---CceEEECHH
Confidence 6666777889999999999999999999999999999999999988876653322 234555543
No 11
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.90 E-value=1.9e-23 Score=165.87 Aligned_cols=151 Identities=54% Similarity=0.825 Sum_probs=122.3
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhc-CCCCceEEeccccccc----ccchhhhhCCCCCCCcccchhhHHHHHHhCC
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYF-GSKEAMVRIDMSEYME----KHTVSKFFGSPPGYVGFENGGQLTEAVRHRP 89 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (287)
+|..+++|.||+|||||.++++|++.+. ....+++.+||+++.+ ...+..+++.++++.++.+
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~------------ 68 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEE------------ 68 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHH------------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccc------------
Confidence 4678999999999999999999999998 7888999999999998 5556666665555443222
Q ss_pred cEEEEEcCcccccH-----------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhc---cCCchHH
Q 047225 90 HSVILFDEIEKAHR-----------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARES---ILGSDQM 155 (287)
Q Consensus 90 ~~il~iDeid~~~~-----------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~---~~~~~~~ 155 (287)
.+|||||||||+++ .+++.|+++++.|.+....|..++..+++||+|+|.+........ .......
T Consensus 69 ~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~ 148 (171)
T PF07724_consen 69 GGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIEQEQ 148 (171)
T ss_dssp HTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCHHHH
T ss_pred hhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccccccHHHH
Confidence 13999999999999 999999999999999998899999999999999999877665531 1223344
Q ss_pred HHHHHHHHHhcCChhHHhccCc
Q 047225 156 ERGVAEELRRRFRPEFLNRIDE 177 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~r~~~ 177 (287)
.....+.++..|.|+|+.||+.
T Consensus 149 ~~~~~~~~~~~f~pEf~~Ri~~ 170 (171)
T PF07724_consen 149 EEQIRDLVEYGFRPEFLGRIDV 170 (171)
T ss_dssp CHHHHHHHHHTS-HHHHTTSSE
T ss_pred HHHHHHHHHcCCCHHHHccCCc
Confidence 5556777788999999999964
No 12
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.89 E-value=4.2e-22 Score=161.00 Aligned_cols=171 Identities=20% Similarity=0.369 Sum_probs=112.0
Q ss_pred CCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh-CCc
Q 047225 12 DPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH-RPH 90 (287)
Q Consensus 12 ~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 90 (287)
..+.++.+++||||||+||||+|+.+|+.+ +.++...+....... ..+...+.. ...
T Consensus 45 ~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k~-------------------~dl~~il~~l~~~ 102 (233)
T PF05496_consen 45 KRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEKA-------------------GDLAAILTNLKEG 102 (233)
T ss_dssp CTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--SC-------------------HHHHHHHHT--TT
T ss_pred hcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhhH-------------------HHHHHHHHhcCCC
Confidence 345567799999999999999999999999 555554443221111 233333322 345
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceee--cCCC-----ceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVT--DGKG-----QTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~--~~~g-----~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
.||||||++++++.+++.|+..||++.+. .+.| ..++++.+.+|.+|+...
T Consensus 103 ~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g---------------------- 160 (233)
T PF05496_consen 103 DILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG---------------------- 160 (233)
T ss_dssp -EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC----------------------
T ss_pred cEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc----------------------
Confidence 69999999999999999999999999863 3433 355667899998887642
Q ss_pred HhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 164 RRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 164 ~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
.++++|.+||+....+..++.+++.+|+.+... -..+.+++++..+|+..+ |...+..++++
T Consensus 161 --~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~---------~l~i~i~~~~~~~Ia~rs-------rGtPRiAnrll 222 (233)
T PF05496_consen 161 --LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR---------ILNIEIDEDAAEEIARRS-------RGTPRIANRLL 222 (233)
T ss_dssp --CTSHCCCTTSSEEEE----THHHHHHHHHHCCH---------CTT-EE-HHHHHHHHHCT-------TTSHHHHHHHH
T ss_pred --ccchhHHhhcceecchhcCCHHHHHHHHHHHHH---------HhCCCcCHHHHHHHHHhc-------CCChHHHHHHH
Confidence 467899999988899999999999999954432 236899999999999976 45556666555
Q ss_pred H
Q 047225 244 E 244 (287)
Q Consensus 244 ~ 244 (287)
.
T Consensus 223 ~ 223 (233)
T PF05496_consen 223 R 223 (233)
T ss_dssp H
T ss_pred H
Confidence 4
No 13
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.5e-21 Score=178.42 Aligned_cols=212 Identities=26% Similarity=0.424 Sum_probs=168.8
Q ss_pred chhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhH
Q 047225 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQL 81 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
||.+++..++.| .+||+||||+|||++++.+|+.+ +.+++.+.++...|. +++-|+...|.|....+-+
T Consensus 340 AV~~l~~~~kGp-----ILcLVGPPGVGKTSLgkSIA~al---~RkfvR~sLGGvrDE---AEIRGHRRTYIGamPGrIi 408 (782)
T COG0466 340 AVQKLTKKLKGP-----ILCLVGPPGVGKTSLGKSIAKAL---GRKFVRISLGGVRDE---AEIRGHRRTYIGAMPGKII 408 (782)
T ss_pred HHHHHhccCCCc-----EEEEECCCCCCchhHHHHHHHHh---CCCEEEEecCccccH---HHhccccccccccCChHHH
Confidence 456666666665 79999999999999999999999 889999999998886 5667788888888886444
Q ss_pred HHHHHhC-CcEEEEEcCcccccHH----HHHHHHHhhc---CceeecCC-CceeeccceEEEEeecCCchhhhhhccCCc
Q 047225 82 TEAVRHR-PHSVILFDEIEKAHRD----VLNVMLQLLD---DGRVTDGK-GQTVDLKNTIIIMTSNIGDSVIARESILGS 152 (287)
Q Consensus 82 ~~~~~~~-~~~il~iDeid~~~~~----~~~~L~~~l~---~~~~~~~~-g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~ 152 (287)
..+...+ .+.++++||+|++..+ --++|+++++ +..|.++- ....++++++||+|+|.-.
T Consensus 409 Q~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~----------- 477 (782)
T COG0466 409 QGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLD----------- 477 (782)
T ss_pred HHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccc-----------
Confidence 4443332 2459999999999764 3467888886 34455554 6778889999999999742
Q ss_pred hHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhc---CcEEEeChhHHHHHHHhccCCC
Q 047225 153 DQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAK---NMELTVTHTFKKKLIEEGYNPS 229 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~---~~~~~i~~~~~~~l~~~~~~~~ 229 (287)
.++.+|++|. ++|.++-++.++-.+|.+.+|-. ..+..+ ...+.++++++..|.+. |...
T Consensus 478 -------------tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiP--k~~~~~gL~~~el~i~d~ai~~iI~~-YTRE 540 (782)
T COG0466 478 -------------TIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIP--KQLKEHGLKKGELTITDEAIKDIIRY-YTRE 540 (782)
T ss_pred -------------cCChHHhcce-eeeeecCCChHHHHHHHHHhcch--HHHHHcCCCccceeecHHHHHHHHHH-HhHh
Confidence 3689999999 99999999999999999988742 222222 23489999999999986 7888
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH
Q 047225 230 YGARPLRRAIGRLLEDNLAEIIL 252 (287)
Q Consensus 230 ~~~r~l~~~i~~~~~~~~~~~~~ 252 (287)
.|+|.|++-+.+++..+..+.+.
T Consensus 541 AGVR~LeR~i~ki~RK~~~~i~~ 563 (782)
T COG0466 541 AGVRNLEREIAKICRKAAKKILL 563 (782)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999988876655
No 14
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.88 E-value=6.5e-22 Score=176.51 Aligned_cols=215 Identities=19% Similarity=0.264 Sum_probs=171.2
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhH
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQL 81 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (287)
++.++..+..+. ++++.|++||||..+|+++++.....+.+|+.+||....+....+.+||...|. +|....++
T Consensus 258 ~~~akr~A~tds----tVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye~GAFTGA~~~GK- 332 (560)
T COG3829 258 LELAKRIAKTDS----TVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYEKGAFTGASKGGK- 332 (560)
T ss_pred HHHHHhhcCCCC----cEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcCCccccccccCCC-
Confidence 344455554443 699999999999999999999999999999999999999888888999987763 45443211
Q ss_pred HHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHH
Q 047225 82 TEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAE 161 (287)
Q Consensus 82 ~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~ 161 (287)
...+...+.+.||+|||..++...|..|+++++++.+.--.|...-..++++|+|||......
T Consensus 333 ~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~----------------- 395 (560)
T COG3829 333 PGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKM----------------- 395 (560)
T ss_pred CcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHH-----------------
Confidence 122233355799999999999999999999999988765444444456899999999864322
Q ss_pred HHHhcCChhHHhccCce-EEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEE-EeChhHHHHHHHhccCCCCCchhHHH
Q 047225 162 ELRRRFRPEFLNRIDEV-IVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMEL-TVTHTFKKKLIEEGYNPSYGARPLRR 237 (287)
Q Consensus 162 ~~~~~~~~~l~~r~~~~-i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~-~i~~~~~~~l~~~~~~~~~~~r~l~~ 237 (287)
.-++.|+.+|..|++-. |.+||+. ++|+..++.++++++..++. ..+ .++++++..+.++.|+. ++|+|++
T Consensus 396 i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~---~~v~~ls~~a~~~L~~y~WPG--NVRELeN 470 (560)
T COG3829 396 IAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYG---RNVKGLSPDALALLLRYDWPG--NVRELEN 470 (560)
T ss_pred HhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcC---CCcccCCHHHHHHHHhCCCCc--hHHHHHH
Confidence 12358999999999755 8999998 88999999999999888874 344 49999999999999976 5699999
Q ss_pred HHHHHHH
Q 047225 238 AIGRLLE 244 (287)
Q Consensus 238 ~i~~~~~ 244 (287)
.+++++.
T Consensus 471 viER~v~ 477 (560)
T COG3829 471 VIERAVN 477 (560)
T ss_pred HHHHHHh
Confidence 9998874
No 15
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.87 E-value=1.4e-20 Score=180.69 Aligned_cols=213 Identities=26% Similarity=0.407 Sum_probs=160.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhC--CcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHR--PHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~il~iD 96 (287)
.++|+||||+|||++++.+++.+ +.+++.++++...+. ..+.|+...+.|.... .+...+... ...+++||
T Consensus 351 ~i~l~GppG~GKTtl~~~ia~~l---~~~~~~i~~~~~~d~---~~i~g~~~~~~g~~~G-~~~~~l~~~~~~~~villD 423 (784)
T PRK10787 351 ILCLVGPPGVGKTSLGQSIAKAT---GRKYVRMALGGVRDE---AEIRGHRRTYIGSMPG-KLIQKMAKVGVKNPLFLLD 423 (784)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEcCCCCCH---HHhccchhccCCCCCc-HHHHHHHhcCCCCCEEEEE
Confidence 69999999999999999999998 567888887765544 3344444444444433 444444432 24599999
Q ss_pred CcccccHHH----HHHHHHhhcCc---eeecCC-CceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCC
Q 047225 97 EIEKAHRDV----LNVMLQLLDDG---RVTDGK-GQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFR 168 (287)
Q Consensus 97 eid~~~~~~----~~~L~~~l~~~---~~~~~~-g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
|+|++.++. .++|+++++.+ .+.++. ...++++++++|+|+|.- .++
T Consensus 424 Eidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-------------------------~i~ 478 (784)
T PRK10787 424 EIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-------------------------NIP 478 (784)
T ss_pred ChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-------------------------CCC
Confidence 999998865 58999999854 233332 455677899999999863 358
Q ss_pred hhHHhccCceEEeCCCCHHHHHHHHHHHHH-HHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHH
Q 047225 169 PEFLNRIDEVIVFRQLNKMQLMEIVDIMLK-EIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNL 247 (287)
Q Consensus 169 ~~l~~r~~~~i~~~~~~~~~~~~il~~~l~-~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~ 247 (287)
++|++|+ ..|.|++++.++..+|++.++. +...+....+..+.++++++++++. .|.+..|+|.+++.+++.+...+
T Consensus 479 ~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~-~yt~e~GaR~LeR~I~~i~r~~l 556 (784)
T PRK10787 479 APLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR-YYTREAGVRSLEREISKLCRKAV 556 (784)
T ss_pred HHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH-hCCcccCCcHHHHHHHHHHHHHH
Confidence 9999999 8999999999999999999985 3333333334479999999999997 68899999999999999999999
Q ss_pred HHHHHhccCCCCCEEEEEEcC
Q 047225 248 AEIILTGYIQVGDSVTMDCDS 268 (287)
Q Consensus 248 ~~~~~~~~~~~~~~~~i~~~~ 268 (287)
++..+.+... ++.++.++
T Consensus 557 ~~~~~~~~~~---~v~v~~~~ 574 (784)
T PRK10787 557 KQLLLDKSLK---HIEINGDN 574 (784)
T ss_pred HHHHhcCCCc---eeeecHHH
Confidence 8887765543 45555544
No 16
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.87 E-value=1.9e-21 Score=170.30 Aligned_cols=203 Identities=19% Similarity=0.311 Sum_probs=154.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++|+|++||||+++|++++........+++.+||....+......+||...+. .|... .-...+.....++|||||
T Consensus 24 pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~--~~~G~~~~a~gGtL~Lde 101 (329)
T TIGR02974 24 PVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQK--RHQGRFERADGGTLFLDE 101 (329)
T ss_pred CEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCccc--ccCCchhhCCCCEEEeCC
Confidence 699999999999999999999887677899999999876554455677765442 22211 112233344567999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC-
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID- 176 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~- 176 (287)
++.++...|..|+++++++.+....+......++.+|++++...... .-++.|.++|+.|+.
T Consensus 102 i~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~-----------------~~~g~fr~dL~~rl~~ 164 (329)
T TIGR02974 102 LATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPAL-----------------AAEGRFRADLLDRLAF 164 (329)
T ss_pred hHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHH-----------------hhcCchHHHHHHHhcc
Confidence 99999999999999999987654333333345789999998643221 113468899999995
Q ss_pred ceEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcE--EEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 177 EVIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNME--LTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 177 ~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~--~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
..|.+||+. .+|+..++.+++.++..+.. .. ..+++++++.|..+.|+. ++|+|++++++++..
T Consensus 165 ~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~---~~~~~~ls~~a~~~L~~y~WPG--NvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 165 DVITLPPLRERQEDIMLLAEHFAIRMARELG---LPLFPGFTPQAREQLLEYHWPG--NVRELKNVVERSVYR 232 (329)
T ss_pred hhcCCCchhhhhhhHHHHHHHHHHHHHHHhC---CCCCCCcCHHHHHHHHhCCCCc--hHHHHHHHHHHHHHh
Confidence 459999999 78999999999988766553 23 479999999999999966 559999999988774
No 17
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.86 E-value=2.2e-21 Score=173.15 Aligned_cols=204 Identities=20% Similarity=0.254 Sum_probs=166.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iD 96 (287)
.++++.|++||||..+|++|++.....+.+++.+||..+........+||+..|. +|... .-...+...+.++||+|
T Consensus 165 a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~--~r~G~fE~A~GGTLfLD 242 (464)
T COG2204 165 ASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAIT--RRIGRFEQANGGTLFLD 242 (464)
T ss_pred CCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCccc--ccCcceeEcCCceEEee
Confidence 3699999999999999999999998888999999999999888888999988763 33332 22234445567899999
Q ss_pred CcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC
Q 047225 97 EIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID 176 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 176 (287)
||..++.++|..|+++++++.+.--.|...-..++.||.+||..-. +..-++.|.++|..|+.
T Consensus 243 EI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~-----------------~~v~~G~FReDLyyRLn 305 (464)
T COG2204 243 EIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLE-----------------EEVAAGRFREDLYYRLN 305 (464)
T ss_pred ccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHH-----------------HHHHcCCcHHHHHhhhc
Confidence 9999999999999999999987764444444458899999987532 12224689999999996
Q ss_pred ce-EEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 177 EV-IVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 177 ~~-i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
.. +.+||+. .+|+.-++.+++.+++...... ...++++++..+..+.|+. ++|+|++++++++.
T Consensus 306 V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~--~~~~s~~a~~~L~~y~WPG--NVREL~N~ver~~i 372 (464)
T COG2204 306 VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRP--PKGFSPEALAALLAYDWPG--NVRELENVVERAVI 372 (464)
T ss_pred cceecCCcccccchhHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHhCCCCh--HHHHHHHHHHHHHh
Confidence 54 8999998 8899999999999988877432 4689999999999999976 56999999998776
No 18
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.85 E-value=5.1e-20 Score=178.21 Aligned_cols=204 Identities=26% Similarity=0.406 Sum_probs=150.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh--CCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH--RPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~il~iD 96 (287)
+++|+||||||||++++++|+.+ +.+++.++++...+. ..+.+....+.|.... .+.+.+.. ....|++||
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l---~~~~~~i~~~~~~~~---~~i~g~~~~~~g~~~g-~i~~~l~~~~~~~~villD 421 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKAL---NRKFVRFSLGGVRDE---AEIRGHRRTYVGAMPG-RIIQGLKKAKTKNPLFLLD 421 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---cCCeEEEeCCCcccH---HHHcCCCCceeCCCCc-hHHHHHHHhCcCCCEEEEe
Confidence 69999999999999999999999 677888887665443 2333444444444332 33333332 233599999
Q ss_pred CcccccHH----HHHHHHHhhcC---ceeecCC-CceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCC
Q 047225 97 EIEKAHRD----VLNVMLQLLDD---GRVTDGK-GQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFR 168 (287)
Q Consensus 97 eid~~~~~----~~~~L~~~l~~---~~~~~~~-g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
|+|++.++ ..++|+++++. +.+..+. +..+++++++||+|+|... .++
T Consensus 422 Eidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~------------------------~i~ 477 (775)
T TIGR00763 422 EIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSID------------------------TIP 477 (775)
T ss_pred chhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCch------------------------hCC
Confidence 99999764 34788888874 3444432 5667778899999999742 468
Q ss_pred hhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcC---cEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 169 PEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKN---MELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 169 ~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~---~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
++|++|| ..|.|++|+.++..+|++.++... .+...+ ..+.++++++.+++. .|....|+|.+++.+.+.+..
T Consensus 478 ~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~--~~~~~~l~~~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~i~~~~~~ 553 (775)
T TIGR00763 478 RPLLDRM-EVIELSGYTEEEKLEIAKKYLIPK--ALEDHGLKPDELKITDEALLLLIK-YYTREAGVRNLERQIEKICRK 553 (775)
T ss_pred HHHhCCe-eEEecCCCCHHHHHHHHHHHHHHH--HHHHcCCCcceEEECHHHHHHHHH-hcChhcCChHHHHHHHHHHHH
Confidence 9999999 789999999999999998887532 222222 258999999999998 588899999999999999988
Q ss_pred HHHHHHHhccCC
Q 047225 246 NLAEIILTGYIQ 257 (287)
Q Consensus 246 ~~~~~~~~~~~~ 257 (287)
...+....++..
T Consensus 554 ~~~~~~~~~~~~ 565 (775)
T TIGR00763 554 AAVKLVEQGEKK 565 (775)
T ss_pred HHHHHHhccCcc
Confidence 865554445443
No 19
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.85 E-value=5.5e-20 Score=156.77 Aligned_cols=200 Identities=21% Similarity=0.342 Sum_probs=135.0
Q ss_pred ccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcC----CCCceEEecccccccccchhhhhCCCCCCCcccchhhHHH
Q 047225 8 VGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFG----SKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTE 83 (287)
Q Consensus 8 ~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
.++..++.+. +++|+||||||||++|+.+++.+.. ....++.+++++... ..+| .. ...+.+
T Consensus 34 ~g~~~~~~~~-~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~-----~~~g-------~~-~~~~~~ 99 (261)
T TIGR02881 34 EGLKTSKQVL-HMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVG-----EYIG-------HT-AQKTRE 99 (261)
T ss_pred cCCCCCCCcc-eEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhh-----hhcc-------ch-HHHHHH
Confidence 3455444444 7999999999999999999998632 223555555544321 1111 11 123445
Q ss_pred HHHhCCcEEEEEcCccccc--------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHH
Q 047225 84 AVRHRPHSVILFDEIEKAH--------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQM 155 (287)
Q Consensus 84 ~~~~~~~~il~iDeid~~~--------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~ 155 (287)
.+.....+||||||+|.+. .+.++.|++.++++. .++++|+++.+.....
T Consensus 100 ~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-----------~~~~vila~~~~~~~~----------- 157 (261)
T TIGR02881 100 VIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-----------NEFVLILAGYSDEMDY----------- 157 (261)
T ss_pred HHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-----------CCEEEEecCCcchhHH-----------
Confidence 5555556799999999865 457788888887632 2345666665432100
Q ss_pred HHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh-------ccCC
Q 047225 156 ERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE-------GYNP 228 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~-------~~~~ 228 (287)
-..++|+|.+||+..+.||+++.+++.+|++..+... ...++++++.+++.. ....
T Consensus 158 --------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~---------~~~l~~~a~~~l~~~~~~~~~~~~~~ 220 (261)
T TIGR02881 158 --------FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER---------EYKLTEEAKWKLREHLYKVDQLSSRE 220 (261)
T ss_pred --------HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc---------CCccCHHHHHHHHHHHHHHHhccCCC
Confidence 0135689999998889999999999999998777541 456899999988653 2233
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhccCCCCC
Q 047225 229 SYGARPLRRAIGRLLEDNLAEIILTGYIQVGD 260 (287)
Q Consensus 229 ~~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~ 260 (287)
..++|.+++.++.++..+..+.+.+......+
T Consensus 221 ~gn~R~~~n~~e~a~~~~~~r~~~~~~~~~~~ 252 (261)
T TIGR02881 221 FSNARYVRNIIEKAIRRQAVRLLDKSDYSKED 252 (261)
T ss_pred CchHHHHHHHHHHHHHHHHHHHhccCCCCHHH
Confidence 56789999999999988876665555544333
No 20
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.85 E-value=2e-20 Score=165.06 Aligned_cols=204 Identities=18% Similarity=0.235 Sum_probs=164.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++|.|++||||..+|++|++.......+++++||....+....+++||+..|. +|....+. ......+.+.+|+||
T Consensus 248 tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~--GrFElAdGGTLFLDE 325 (550)
T COG3604 248 TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRR--GRFELADGGTLFLDE 325 (550)
T ss_pred eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccC--cceeecCCCeEechh
Confidence 699999999999999999999998889999999999999888889999988664 23222111 112223457999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE 177 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 177 (287)
|..++...|..|++++++|++.--.|...-.-++.+|++||..-. .. .-...|..+|..|+..
T Consensus 326 IGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~--------------~~---V~~G~FRaDLYyRLsV 388 (550)
T COG3604 326 IGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLE--------------EM---VRDGEFRADLYYRLSV 388 (550)
T ss_pred hccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHH--------------HH---HHcCcchhhhhhcccc
Confidence 999999999999999999987754444444458899999997422 22 2235799999999975
Q ss_pred e-EEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 178 V-IVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 178 ~-i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
+ +.+||+. .+|+.-+..++++++..++... .+.++.++.+.+.++.|+. ++|+++.+|++++.-
T Consensus 389 ~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~--~l~ls~~Al~~L~~y~wPG--NVRELen~veRavll 455 (550)
T COG3604 389 FPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA--ILSLSAEALELLSSYEWPG--NVRELENVVERAVLL 455 (550)
T ss_pred cccCCCCcccCCccHHHHHHHHHHHHHHhcCCc--ccccCHHHHHHHHcCCCCC--cHHHHHHHHHHHHHH
Confidence 5 8889998 7789999999999988877422 6899999999999988866 569999999988873
No 21
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.84 E-value=2.8e-20 Score=163.06 Aligned_cols=204 Identities=17% Similarity=0.287 Sum_probs=151.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++|+|++||||+++|+.++........+++.+||....+......+||...+. .|... .....+.....++|||||
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~--~~~g~l~~a~gGtL~l~~ 108 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQK--RHPGRFERADGGTLFLDE 108 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCccc--ccCCchhccCCCeEEeCC
Confidence 699999999999999999998776667899999999876544345677755432 22111 112233444557999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC-
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID- 176 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~- 176 (287)
++.++...|..|+.+++++.+....+......++.+|++++...... .-++.|.++|+.|+.
T Consensus 109 i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l-----------------~~~g~f~~dL~~~l~~ 171 (326)
T PRK11608 109 LATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM-----------------VAEGKFRADLLDRLAF 171 (326)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHH-----------------HHcCCchHHHHHhcCC
Confidence 99999999999999999887654333222224788999987653221 123478899999994
Q ss_pred ceEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 177 EVIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 177 ~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
..|.+||+. .+|+..++.+++.++..+.... ....++++++..+..+.|+. ++|+|++++++++.
T Consensus 172 ~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~-~~~~~s~~al~~L~~y~WPG--NvrEL~~vl~~a~~ 238 (326)
T PRK11608 172 DVVQLPPLRERQSDIMLMAEHFAIQMCRELGLP-LFPGFTERARETLLNYRWPG--NIRELKNVVERSVY 238 (326)
T ss_pred CEEECCChhhhhhhHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHHhCCCCc--HHHHHHHHHHHHHH
Confidence 569999999 5789999999998876554221 01469999999999999976 55999999998876
No 22
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.84 E-value=2.8e-20 Score=173.83 Aligned_cols=203 Identities=19% Similarity=0.274 Sum_probs=154.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCC-cccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYV-GFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++|+|++||||+++|+.|+........+++.+||..+.+......+||...+.. |... .-...+.....++|||||
T Consensus 221 pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~lde 298 (534)
T TIGR01817 221 TVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDE 298 (534)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCc--CCCCcccccCCCeEEEec
Confidence 6999999999999999999998876788999999998876554566777654422 2111 111122233457999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE 177 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 177 (287)
++.+++..|..|+++++++.+....+......++.+|++++...... .-++.|.++|..|+..
T Consensus 299 i~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~-----------------~~~~~f~~~L~~rl~~ 361 (534)
T TIGR01817 299 IGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEA-----------------VAKGEFRADLYYRINV 361 (534)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHH-----------------HHcCCCCHHHHHHhcC
Confidence 99999999999999999887664333333334788999988653221 1145789999999964
Q ss_pred -eEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 178 -VIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 178 -~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
.|.+||+. .+|+..++.+++.++..+. +..+.+++++++.|..+.|+. ++|+|++++++++..
T Consensus 362 ~~i~lPpLreR~eDi~~L~~~~l~~~~~~~---~~~~~~s~~a~~~L~~~~WPG--NvrEL~~v~~~a~~~ 427 (534)
T TIGR01817 362 VPIFLPPLRERREDIPLLAEAFLEKFNREN---GRPLTITPSAIRVLMSCKWPG--NVRELENCLERTATL 427 (534)
T ss_pred CeeeCCCcccccccHHHHHHHHHHHHHHHc---CCCCCCCHHHHHHHHhCCCCC--hHHHHHHHHHHHHHh
Confidence 59999999 7899999999998876654 223689999999999999966 559999999988763
No 23
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.84 E-value=8.1e-20 Score=157.49 Aligned_cols=160 Identities=19% Similarity=0.308 Sum_probs=117.6
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHH----HhCCcEE
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAV----RHRPHSV 92 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i 92 (287)
.++++|||||||||||+|+.||... +..+..++..... ..+...+++.. ..+...|
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~g-----------------vkdlr~i~e~a~~~~~~gr~ti 107 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTSG-----------------VKDLREIIEEARKNRLLGRRTI 107 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhh---CCceEEecccccc-----------------HHHHHHHHHHHHHHHhcCCceE
Confidence 3479999999999999999999988 6677766653321 11112333322 2244689
Q ss_pred EEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHH
Q 047225 93 ILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFL 172 (287)
Q Consensus 93 l~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (287)
||+||+++++...|+.|++.+|+|.+ ++|.+|...+. -.++++|+
T Consensus 108 LflDEIHRfnK~QQD~lLp~vE~G~i-------------ilIGATTENPs----------------------F~ln~ALl 152 (436)
T COG2256 108 LFLDEIHRFNKAQQDALLPHVENGTI-------------ILIGATTENPS----------------------FELNPALL 152 (436)
T ss_pred EEEehhhhcChhhhhhhhhhhcCCeE-------------EEEeccCCCCC----------------------eeecHHHh
Confidence 99999999999999999999998743 35555433221 13578999
Q ss_pred hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 173 NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 173 ~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
||+ .++.+.|++.+++.+++.+.+......+. +..+.++++++++++..+. .+.|++++
T Consensus 153 SR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~--~~~~~i~~~a~~~l~~~s~------GD~R~aLN 211 (436)
T COG2256 153 SRA-RVFELKPLSSEDIKKLLKRALLDEERGLG--GQIIVLDEEALDYLVRLSN------GDARRALN 211 (436)
T ss_pred hhh-heeeeecCCHHHHHHHHHHHHhhhhcCCC--cccccCCHHHHHHHHHhcC------chHHHHHH
Confidence 999 99999999999999999886655444443 2246799999999999764 56666666
No 24
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.83 E-value=5.8e-20 Score=169.25 Aligned_cols=201 Identities=19% Similarity=0.245 Sum_probs=152.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++|.|++||||+.+|+.+++.......+++.+||....+......+||...|. .|.... .-...+.....+.|||||
T Consensus 237 pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~-~~~Gl~e~A~gGTLfLde 315 (526)
T TIGR02329 237 TVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRG-GRTGLIEAAHRGTLFLDE 315 (526)
T ss_pred cEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCccccccccccc-ccccchhhcCCceEEecC
Confidence 799999999999999999999887778899999999987765566788866543 222110 112233334567999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC-
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID- 176 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~- 176 (287)
++.++...|..|+++++++.+..-.+......++.+|++++...... .-++.|.++|..|+.
T Consensus 316 I~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~-----------------v~~g~fr~dL~~rL~~ 378 (526)
T TIGR02329 316 IGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTA-----------------VQQGRFRRDLFYRLSI 378 (526)
T ss_pred hHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHH-----------------hhhcchhHHHHHhcCC
Confidence 99999999999999999987654333333334778999998753321 113468889999996
Q ss_pred ceEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHH-------HHHhccCCCCCchhHHHHHHHHHH
Q 047225 177 EVIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKK-------LIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 177 ~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~-------l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
..|.+||+. .+|+..++.+++.++.... .+.++++++.. |..+.|+. ++|+|++.+++++.
T Consensus 379 ~~I~lPPLReR~eDI~~L~~~fl~~~~~~~-----~~~~~~~a~~~~~~~~~~L~~y~WPG--NvrEL~nvier~~i 448 (526)
T TIGR02329 379 LRIALPPLRERPGDILPLAAEYLVQAAAAL-----RLPDSEAAAQVLAGVADPLQRYPWPG--NVRELRNLVERLAL 448 (526)
T ss_pred cEEeCCCchhchhHHHHHHHHHHHHHHHHc-----CCCCCHHHHHHhHHHHHHHHhCCCCc--hHHHHHHHHHHHHH
Confidence 459999999 5799999999998876543 23588888888 88999976 56999999998876
No 25
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.7e-18 Score=144.83 Aligned_cols=230 Identities=25% Similarity=0.361 Sum_probs=159.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCC-------cE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRP-------HS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 91 (287)
|++|.||+|||||.||+.||+.+ +.|+..-|+....+ +||+|-+..+-+...+..+. ++
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~L---nVPFaiADATtLTE-----------AGYVGEDVENillkLlqaadydV~rAerG 164 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKIL---NVPFAIADATTLTE-----------AGYVGEDVENILLKLLQAADYDVERAERG 164 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHh---CCCeeeccccchhh-----------ccccchhHHHHHHHHHHHcccCHHHHhCC
Confidence 79999999999999999999999 78888777766543 56777666556666555543 48
Q ss_pred EEEEcCcccccH--------------HHHHHHHHhhcCceeecC--CCcee--------eccceEEEEeecCC-chhhh-
Q 047225 92 VILFDEIEKAHR--------------DVLNVMLQLLDDGRVTDG--KGQTV--------DLKNTIIIMTSNIG-DSVIA- 145 (287)
Q Consensus 92 il~iDeid~~~~--------------~~~~~L~~~l~~~~~~~~--~g~~i--------~~~~~~iI~t~n~~-~~~~~- 145 (287)
|++|||+|+... ++|.+|+++++.-..+.+ .|+.. +-.|..||+..... -..+-
T Consensus 165 IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~ 244 (408)
T COG1219 165 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIK 244 (408)
T ss_pred eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHH
Confidence 999999998633 589999999996444433 24433 33466666644321 11111
Q ss_pred ---hhccCCchHH----------HHHH-----HHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHH----HHHHHHHHH
Q 047225 146 ---RESILGSDQM----------ERGV-----AEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVD----IMLKEIYER 203 (287)
Q Consensus 146 ---~~~~~~~~~~----------~~~~-----~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~----~~l~~~~~~ 203 (287)
....+||... ...+ ++..+..+-|+|+.|++.+..+.+++.+++.+|+. ..+.++...
T Consensus 245 ~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~L 324 (408)
T COG1219 245 KRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKL 324 (408)
T ss_pred HhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHH
Confidence 1133443211 1111 12334456699999999999999999999999995 233444444
Q ss_pred HHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEE
Q 047225 204 LEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMD 265 (287)
Q Consensus 204 ~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (287)
+.-.+..+.++++++..+++.+.....|+|.||..++.++...+.+.- .......+.|+
T Consensus 325 f~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~MfelP---s~~~v~~v~I~ 383 (408)
T COG1219 325 FEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFELP---SLEDVEKVVIT 383 (408)
T ss_pred hcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCC---CCCCceEEEEe
Confidence 444677899999999999999999999999999999999886664442 22223455555
No 26
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.83 E-value=7.2e-20 Score=168.51 Aligned_cols=201 Identities=19% Similarity=0.269 Sum_probs=148.8
Q ss_pred EEEEeccCCChHHHHHHHHHHH--------hcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCC
Q 047225 19 SFLFTGPTGVGKTELANALAFE--------YFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRP 89 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 89 (287)
+++|+|++||||+.+|+.+++. ....+.+++.+||..+.+......+||...|. .|.... .-...+...+
T Consensus 244 pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~-~~~Gl~e~A~ 322 (538)
T PRK15424 244 AVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRG-GRAGLFEIAH 322 (538)
T ss_pred cEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCcccc-ccCCchhccC
Confidence 6999999999999999999998 55567899999999988766667788866543 222110 1112333445
Q ss_pred cEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 90 HSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 90 ~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
.++|||||++.++...|..|+++++++.+..-.+...-..++.+|+++|...... .-++.|.+
T Consensus 323 gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~~~-----------------v~~g~Fr~ 385 (538)
T PRK15424 323 GGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLEED-----------------VRQGRFRR 385 (538)
T ss_pred CCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHHHH-----------------HhcccchH
Confidence 6799999999999999999999999987664333333335788999998753321 11346888
Q ss_pred hHHhccCc-eEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHH-------HHHHHhccCCCCCchhHHHHH
Q 047225 170 EFLNRIDE-VIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFK-------KKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 170 ~l~~r~~~-~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~-------~~l~~~~~~~~~~~r~l~~~i 239 (287)
+|..|+.. .|.+||+. .+|+..++.+++.++..... ..++.+++ +.|..+.|+. ++|+|++.+
T Consensus 386 dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~-----~~~~~~a~~~~~~a~~~L~~y~WPG--NvREL~nvi 458 (538)
T PRK15424 386 DLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALS-----APFSAALRQGLQQCETLLLHYDWPG--NVRELRNLM 458 (538)
T ss_pred HHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcC-----CCCCHHHHHhhHHHHHHHHhCCCCc--hHHHHHHHH
Confidence 99999864 49999999 57899999999987654431 23566555 7788888866 569999999
Q ss_pred HHHHH
Q 047225 240 GRLLE 244 (287)
Q Consensus 240 ~~~~~ 244 (287)
++++.
T Consensus 459 er~~i 463 (538)
T PRK15424 459 ERLAL 463 (538)
T ss_pred HHHHH
Confidence 98876
No 27
>CHL00181 cbbX CbbX; Provisional
Probab=99.83 E-value=2.9e-19 Score=153.52 Aligned_cols=192 Identities=21% Similarity=0.381 Sum_probs=129.0
Q ss_pred cCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcC----CCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHH
Q 047225 9 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFG----SKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEA 84 (287)
Q Consensus 9 ~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (287)
++..++.+. +++|+||||||||++|+++++.+.. ...+++.++.++.. ...+|. .. ....+.
T Consensus 52 g~~~~~~~~-~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~-----~~~~g~-------~~-~~~~~~ 117 (287)
T CHL00181 52 GLTSSNPGL-HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLV-----GQYIGH-------TA-PKTKEV 117 (287)
T ss_pred CCCCCCCCc-eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHH-----HHHhcc-------ch-HHHHHH
Confidence 444444444 7999999999999999999998743 22346666654322 112221 11 233445
Q ss_pred HHhCCcEEEEEcCcccc---------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHH
Q 047225 85 VRHRPHSVILFDEIEKA---------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQM 155 (287)
Q Consensus 85 ~~~~~~~il~iDeid~~---------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~ 155 (287)
+....++||||||++.+ ..+.++.|+++|+++. .+++||++++...
T Consensus 118 l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~-----------~~~~vI~ag~~~~-------------- 172 (287)
T CHL00181 118 LKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR-----------DDLVVIFAGYKDR-------------- 172 (287)
T ss_pred HHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC-----------CCEEEEEeCCcHH--------------
Confidence 55555679999999975 5678889999998632 2456777765421
Q ss_pred HHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHH----HhccCCCCC
Q 047225 156 ERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLI----EEGYNPSYG 231 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~----~~~~~~~~~ 231 (287)
++..+ ..+|+|.+||+..|.|+|++.+++.+|+..++.+.. ..++++....+. .....+.+|
T Consensus 173 ---~~~~~--~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~---------~~l~~~~~~~L~~~i~~~~~~~~~G 238 (287)
T CHL00181 173 ---MDKFY--ESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ---------YQLTPEAEKALLDYIKKRMEQPLFA 238 (287)
T ss_pred ---HHHHH--hcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc---------CCCChhHHHHHHHHHHHhCCCCCCc
Confidence 11111 236899999999999999999999999999887642 335555544444 333334444
Q ss_pred -chhHHHHHHHHHHHHHHHHHHh
Q 047225 232 -ARPLRRAIGRLLEDNLAEIILT 253 (287)
Q Consensus 232 -~r~l~~~i~~~~~~~~~~~~~~ 253 (287)
+|.+++++++++...-.+...+
T Consensus 239 NaR~vrn~ve~~~~~~~~r~~~~ 261 (287)
T CHL00181 239 NARSVRNALDRARMRQANRIFES 261 (287)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcC
Confidence 8999999999998877666444
No 28
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.83 E-value=1.3e-19 Score=168.03 Aligned_cols=205 Identities=19% Similarity=0.231 Sum_probs=155.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++|+|++||||+++|+.++......+.+++.+||..+.+......+||...+. .|.... -...+.....++|||||
T Consensus 212 pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lfG~~~g~~~ga~~~--~~g~~~~a~gGtL~lde 289 (509)
T PRK05022 212 NVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELFGHVKGAFTGAISN--RSGKFELADGGTLFLDE 289 (509)
T ss_pred cEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhcCccccccCCCccc--CCcchhhcCCCEEEecC
Confidence 699999999999999999999987777899999999887654445678765442 222111 11122334557999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE 177 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 177 (287)
++.++...|..|+++++++.+....+......++.+|++++...... ..++.|.++|..|+..
T Consensus 290 I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~-----------------~~~~~f~~dL~~rl~~ 352 (509)
T PRK05022 290 IGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREE-----------------VRAGRFRADLYHRLSV 352 (509)
T ss_pred hhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHH-----------------HHcCCccHHHHhcccc
Confidence 99999999999999999887643333322335789999998753221 1234789999999964
Q ss_pred e-EEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 047225 178 V-IVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDN 246 (287)
Q Consensus 178 ~-i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~ 246 (287)
. |.+||+. .+|+..++.+++.++..++.. ..+.++++++..|..+.|+. ++|+|++++++++..+
T Consensus 353 ~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~--~~~~~s~~a~~~L~~y~WPG--NvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 353 FPLSVPPLRERGDDVLLLAGYFLEQNRARLGL--RSLRLSPAAQAALLAYDWPG--NVRELEHVISRAALLA 420 (509)
T ss_pred cEeeCCCchhchhhHHHHHHHHHHHHHHHcCC--CCCCCCHHHHHHHHhCCCCC--cHHHHHHHHHHHHHhc
Confidence 4 9999999 578999999999887666532 24689999999999999977 4599999999887744
No 29
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2e-19 Score=164.07 Aligned_cols=212 Identities=24% Similarity=0.409 Sum_probs=166.5
Q ss_pred chhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhH
Q 047225 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQL 81 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
||.++|..++.+ .+||+||||+|||++++.+|+.+ +..++.+..+...|. .++-|+...|+|.... .+
T Consensus 428 AV~kLrgs~qGk-----IlCf~GPPGVGKTSI~kSIA~AL---nRkFfRfSvGG~tDv---AeIkGHRRTYVGAMPG-ki 495 (906)
T KOG2004|consen 428 AVGKLRGSVQGK-----ILCFVGPPGVGKTSIAKSIARAL---NRKFFRFSVGGMTDV---AEIKGHRRTYVGAMPG-KI 495 (906)
T ss_pred HHHhhcccCCCc-----EEEEeCCCCCCcccHHHHHHHHh---CCceEEEeccccccH---HhhcccceeeeccCCh-HH
Confidence 466677766665 79999999999999999999999 889999999888775 5667777888888874 66
Q ss_pred HHHHHhC--CcEEEEEcCcccccHH----HHHHHHHhhc---CceeecCC-CceeeccceEEEEeecCCchhhhhhccCC
Q 047225 82 TEAVRHR--PHSVILFDEIEKAHRD----VLNVMLQLLD---DGRVTDGK-GQTVDLKNTIIIMTSNIGDSVIARESILG 151 (287)
Q Consensus 82 ~~~~~~~--~~~il~iDeid~~~~~----~~~~L~~~l~---~~~~~~~~-g~~i~~~~~~iI~t~n~~~~~~~~~~~~~ 151 (287)
.+.++.. .+.+++|||+|++-.+ --.+|+++++ +..+.++- ...++++.++||+|+|.-.
T Consensus 496 Iq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~id---------- 565 (906)
T KOG2004|consen 496 IQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVID---------- 565 (906)
T ss_pred HHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccc----------
Confidence 6666663 2459999999988542 3467888886 33344443 6788899999999999753
Q ss_pred chHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCc---EEEeChhHHHHHHHhccCC
Q 047225 152 SDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNM---ELTVTHTFKKKLIEEGYNP 228 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~---~~~i~~~~~~~l~~~~~~~ 228 (287)
.++++|++|+ +.|.++-+..+|..+|.+.+|-... ....|. .+.++++++..+..+ |..
T Consensus 566 --------------tIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a--~~~~gl~~e~v~is~~al~~lI~~-Ycr 627 (906)
T KOG2004|consen 566 --------------TIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQA--LKDCGLKPEQVKISDDALLALIER-YCR 627 (906)
T ss_pred --------------cCChhhhhhh-heeeccCccHHHHHHHHHHhhhhHH--HHHcCCCHHhcCccHHHHHHHHHH-HHH
Confidence 5689999999 9999999999999999998885322 222232 379999999999986 777
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHh
Q 047225 229 SYGARPLRRAIGRLLEDNLAEIILT 253 (287)
Q Consensus 229 ~~~~r~l~~~i~~~~~~~~~~~~~~ 253 (287)
..|+|.|.+-|++++...-.+..-+
T Consensus 628 EaGVRnLqk~iekI~Rk~Al~vv~~ 652 (906)
T KOG2004|consen 628 EAGVRNLQKQIEKICRKVALKVVEG 652 (906)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999998887665444333
No 30
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.4e-19 Score=151.39 Aligned_cols=174 Identities=28% Similarity=0.385 Sum_probs=126.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++||||||||||.+|+++|+.. +..|+.+..|++.. ..+|..+. --+.++..++.+..+|+||||+
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSElVq-----KYiGEGaR-----lVRelF~lArekaPsIIFiDEI 253 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSELVQ-----KYIGEGAR-----LVRELFELAREKAPSIIFIDEI 253 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHHHH-----HHhccchH-----HHHHHHHHHhhcCCeEEEEech
Confidence 49999999999999999999988 78888888877664 34443222 2367888999988899999999
Q ss_pred cc-----------ccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EK-----------AHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~-----------~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|- .+.++|..+++++.+-.-..+ ..++.||++||... .+
T Consensus 254 DAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~------~~nvKVI~ATNR~D------------------------~L 303 (406)
T COG1222 254 DAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP------RGNVKVIMATNRPD------------------------IL 303 (406)
T ss_pred hhhhcccccCCCCchHHHHHHHHHHHHhccCCCC------CCCeEEEEecCCcc------------------------cc
Confidence 93 366899999999886332222 23778999999864 45
Q ss_pred ChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 168 RPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 168 ~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
+|+|+ .|||..|.||.|+.+...+|++.+-.++ +..-+++-+.+..+ ..+.+.-+++.++..+=+-
T Consensus 304 DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-------~l~~dvd~e~la~~-----~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 304 DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-------NLADDVDLELLARL-----TEGFSGADLKAICTEAGMF 371 (406)
T ss_pred ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-------cCccCcCHHHHHHh-----cCCCchHHHHHHHHHHhHH
Confidence 78888 8999999999999999999996665432 22233444333332 2233446777777765444
Q ss_pred HH
Q 047225 246 NL 247 (287)
Q Consensus 246 ~~ 247 (287)
++
T Consensus 372 Ai 373 (406)
T COG1222 372 AI 373 (406)
T ss_pred HH
Confidence 43
No 31
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.82 E-value=1.2e-18 Score=149.75 Aligned_cols=183 Identities=20% Similarity=0.327 Sum_probs=129.3
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCC----CCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcE
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGS----KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHS 91 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (287)
|..+++|+||||||||++|+++++.+... ..+++.+++.+.. ..++|. .. ..+.+.+.....+
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~-----~~~~g~-------~~-~~~~~~~~~a~~g 123 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV-----GQYIGH-------TA-PKTKEILKRAMGG 123 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh-----Hhhccc-------ch-HHHHHHHHHccCc
Confidence 44479999999999999999998887432 2357777764322 122221 11 2344455555558
Q ss_pred EEEEcCcccc---------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 92 VILFDEIEKA---------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 92 il~iDeid~~---------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
+|||||++.+ ..++++.|+++++.+. .++++|++++..... .
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~-----------~~~~vI~a~~~~~~~--------------~---- 174 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR-----------DDLVVILAGYKDRMD--------------S---- 174 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-----------CCEEEEEeCCcHHHH--------------H----
Confidence 9999999976 4567889999998642 355777877643110 0
Q ss_pred HHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh-------ccCCCCCchhH
Q 047225 163 LRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE-------GYNPSYGARPL 235 (287)
Q Consensus 163 ~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~-------~~~~~~~~r~l 235 (287)
-..++|+|.+||+..|.||||+.+++.+|+..++.+. ...+++++.+.+..+ .| ..++|++
T Consensus 175 -~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~---------~~~l~~~a~~~L~~~l~~~~~~~~--~GN~R~l 242 (284)
T TIGR02880 175 -FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ---------QYRFSAEAEEAFADYIALRRTQPH--FANARSI 242 (284)
T ss_pred -HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh---------ccccCHHHHHHHHHHHHHhCCCCC--CChHHHH
Confidence 1134799999999999999999999999999988764 235677888887665 34 4467999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 047225 236 RRAIGRLLEDNLAEIIL 252 (287)
Q Consensus 236 ~~~i~~~~~~~~~~~~~ 252 (287)
++++++++...-.+...
T Consensus 243 rn~ve~~~~~~~~r~~~ 259 (284)
T TIGR02880 243 RNAIDRARLRQANRLFC 259 (284)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999998877765543
No 32
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.82 E-value=2.1e-19 Score=166.69 Aligned_cols=204 Identities=19% Similarity=0.284 Sum_probs=151.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCC-cccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYV-GFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++|+|++||||+++|++++........+++.+||....+......+||..++.. +... .-...+.....++|||||
T Consensus 229 pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~--~~~g~~e~a~~GtL~Lde 306 (520)
T PRK10820 229 PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALE--GKKGFFEQANGGSVLLDE 306 (520)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCccc--CCCChhhhcCCCEEEEeC
Confidence 5999999999999999999988876678999999998876555567787654322 2111 111223334457999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC-
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID- 176 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~- 176 (287)
++.+++..|..|+++++++.+.-..+..-...++.+|++|+.+..... -++.|.++|..|+.
T Consensus 307 I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~-----------------~~g~f~~dL~~rL~~ 369 (520)
T PRK10820 307 IGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELV-----------------QKGEFREDLYYRLNV 369 (520)
T ss_pred hhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHH-----------------HcCCccHHHHhhcCe
Confidence 999999999999999998865443222222346789998876543221 13468899999985
Q ss_pred ceEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 177 EVIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 177 ~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
..+.+||+. .+|+..++..++.+++.+.... .+.+++++++.|..+.|+. ++|+|++.+.+++..
T Consensus 370 ~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~--~~~ls~~a~~~L~~y~WPG--NvreL~nvl~~a~~~ 436 (520)
T PRK10820 370 LTLNLPPLRDRPQDIMPLTELFVARFADEQGVP--RPKLAADLNTVLTRYGWPG--NVRQLKNAIYRALTQ 436 (520)
T ss_pred eEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHhcCCCCC--HHHHHHHHHHHHHHh
Confidence 459999999 5689999999998876655321 3479999999999999966 559999999988763
No 33
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.81 E-value=1.8e-19 Score=158.26 Aligned_cols=202 Identities=17% Similarity=0.243 Sum_probs=153.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC-CCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG-SKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iD 96 (287)
++++.|++||||+.+|+.|+..... ...+++.+||..+.+......+||...|. +|... .-...+.....++||+|
T Consensus 103 ~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~--~k~Glfe~A~GGtLfLD 180 (403)
T COG1221 103 PVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQG--GKAGLFEQANGGTLFLD 180 (403)
T ss_pred cEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccC--CcCchheecCCCEEehh
Confidence 6999999999999999999966655 57899999999999987777899987663 44332 22233444466799999
Q ss_pred CcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHh-cc
Q 047225 97 EIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLN-RI 175 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-r~ 175 (287)
|+..+++..|..|++++++|.+.--.+......++.+|++++...... +. .+ ..|.+ ++
T Consensus 181 EI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~--------------~~---~g---~dl~~rl~ 240 (403)
T COG1221 181 EIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEA--------------VL---AG---ADLTRRLN 240 (403)
T ss_pred hhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHH--------------HH---hh---cchhhhhc
Confidence 999999999999999999998774344444456889999987643211 10 10 36776 66
Q ss_pred CceEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEE-eChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHH
Q 047225 176 DEVIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELT-VTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNL 247 (287)
Q Consensus 176 ~~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~-i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~ 247 (287)
...|.+||+. .+|+..++.+++..++.++ +.++. ..++++..+..+.|+. ++|++++.+++++..+.
T Consensus 241 ~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l---~~~~~~~~~~a~~~L~~y~~pG--NirELkN~Ve~~~~~~~ 310 (403)
T COG1221 241 ILTITLPPLRERKEDILLLAEHFLKSEARRL---GLPLSVDSPEALRALLAYDWPG--NIRELKNLVERAVAQAS 310 (403)
T ss_pred CceecCCChhhchhhHHHHHHHHHHHHHHHc---CCCCCCCCHHHHHHHHhCCCCC--cHHHHHHHHHHHHHHhc
Confidence 7789999999 6677788888888877776 33433 3358999999988866 56899999998887553
No 34
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.81 E-value=2.8e-18 Score=151.14 Aligned_cols=152 Identities=23% Similarity=0.372 Sum_probs=116.5
Q ss_pred CcEEEEEcCccccc------------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHH
Q 047225 89 PHSVILFDEIEKAH------------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQME 156 (287)
Q Consensus 89 ~~~il~iDeid~~~------------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~ 156 (287)
..+||||||+|++. .++|..|+++++.-.+.... ..++-.++.||+++.-.... +
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~-~~i~T~~ILFI~~GAF~~~k------------p 315 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKY-GMVKTDHILFIASGAFHVSK------------P 315 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecc-eeEECCceeEEecCCcCCCC------------h
Confidence 55799999999864 24899999999965555433 35666788899877543110 0
Q ss_pred HHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHH----HHHHHHHHHHHhcCcEEEeChhHHHHHHHhccC-----
Q 047225 157 RGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVD----IMLKEIYERLEAKNMELTVTHTFKKKLIEEGYN----- 227 (287)
Q Consensus 157 ~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~----- 227 (287)
.-+-|+|..||+..+.+.+++.+++..|+. ..+.++...+...|..+.+++++++.|+..++.
T Consensus 316 --------~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~ 387 (443)
T PRK05201 316 --------SDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKT 387 (443)
T ss_pred --------hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccc
Confidence 124599999999999999999999999994 477788788888899999999999999998876
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEE
Q 047225 228 PSYGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMD 265 (287)
Q Consensus 228 ~~~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (287)
.+.|+|.|+..+++++.. ..+...-..+..+.|+
T Consensus 388 ~~iGAR~LrtI~E~~L~d----~~Fe~p~~~~~~v~I~ 421 (443)
T PRK05201 388 ENIGARRLHTVMEKLLED----ISFEAPDMSGETVTID 421 (443)
T ss_pred cccchhhHHHHHHHHHHH----HhccCCCCCCCEEEEC
Confidence 699999999999988884 4444333334455544
No 35
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.7e-18 Score=147.42 Aligned_cols=217 Identities=25% Similarity=0.394 Sum_probs=153.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh-------CCc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH-------RPH 90 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 90 (287)
.|++|.||+|+|||.|++.||+.+ +.|++..||..... +||+|-+...-+.+.+.. +..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQ-----------AGYVGeDVEsvi~KLl~~A~~nVekAQq 292 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQEAEYNVEKAQQ 292 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhh-----------cccccccHHHHHHHHHHHccCCHHHHhc
Confidence 379999999999999999999999 89999999987664 456665544444444433 345
Q ss_pred EEEEEcCccccc--------------HHHHHHHHHhhcCceeecCC--------C--ceeeccceEEEEeecCC--chhh
Q 047225 91 SVILFDEIEKAH--------------RDVLNVMLQLLDDGRVTDGK--------G--QTVDLKNTIIIMTSNIG--DSVI 144 (287)
Q Consensus 91 ~il~iDeid~~~--------------~~~~~~L~~~l~~~~~~~~~--------g--~~i~~~~~~iI~t~n~~--~~~~ 144 (287)
+|+||||+|++. ..+|.+|+++++.-.+..+. | ..|+-.++.||+..... ...+
T Consensus 293 GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I 372 (564)
T KOG0745|consen 293 GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKII 372 (564)
T ss_pred CeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHH
Confidence 899999999875 25899999999965444322 2 23444677777754321 1111
Q ss_pred hh---hccCCchHH---------------------HHHH------HHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHH
Q 047225 145 AR---ESILGSDQM---------------------ERGV------AEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVD 194 (287)
Q Consensus 145 ~~---~~~~~~~~~---------------------~~~~------~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~ 194 (287)
.+ ...+||... .+++ .+....-|-|+|..||+..+.|.+++++++..++.
T Consensus 373 ~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLt 452 (564)
T KOG0745|consen 373 SRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLT 452 (564)
T ss_pred HHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHh
Confidence 11 122331111 1111 11223456799999999999999999999999995
Q ss_pred H----HHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHH
Q 047225 195 I----MLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNLA 248 (287)
Q Consensus 195 ~----~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~~ 248 (287)
. .+.++...+...+..+.+++++++.|++.+...+.|+|.||.++++++..++-
T Consensus 453 EPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamf 510 (564)
T KOG0745|consen 453 EPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMF 510 (564)
T ss_pred cchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcc
Confidence 3 33444444444677899999999999999999999999999999998886654
No 36
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.80 E-value=6.2e-19 Score=168.16 Aligned_cols=200 Identities=18% Similarity=0.264 Sum_probs=151.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+|++||||+++|+++++.......+++.+||....+......+||...+... ......+.....++|||||+
T Consensus 350 pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~----~~~~g~~~~a~~GtL~ldei 425 (638)
T PRK11388 350 PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSE----NGRLSKFELAHGGTLFLEKV 425 (638)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCcc----CCCCCceeECCCCEEEEcCh
Confidence 69999999999999999999988766789999999988765545667775422111 01111222335579999999
Q ss_pred ccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCce
Q 047225 99 EKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEV 178 (287)
Q Consensus 99 d~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~ 178 (287)
+.++...|..|+++++++.+.-..+......++.+|++++...... .-++.|.++|..|+...
T Consensus 426 ~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~-----------------~~~~~f~~dL~~~l~~~ 488 (638)
T PRK11388 426 EYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAML-----------------VEQNRFSRQLYYALHAF 488 (638)
T ss_pred hhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHH-----------------HhcCCChHHHhhhhcee
Confidence 9999999999999999887654333322234778999998754321 11247889999999644
Q ss_pred -EEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 179 -IVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 179 -i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
|.+||+. .+|+..++..++.++.... +..+.+++++++.|..+.|+. ++|+|++.+++++.
T Consensus 489 ~i~lPpLreR~~Di~~L~~~~l~~~~~~~---~~~~~~s~~a~~~L~~y~WPG--NvreL~~~l~~~~~ 552 (638)
T PRK11388 489 EITIPPLRMRREDIPALVNNKLRSLEKRF---STRLKIDDDALARLVSYRWPG--NDFELRSVIENLAL 552 (638)
T ss_pred EEeCCChhhhhhHHHHHHHHHHHHHHHHh---CCCCCcCHHHHHHHHcCCCCC--hHHHHHHHHHHHHH
Confidence 9999999 4699999999998876554 223579999999999999976 45999999998765
No 37
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.80 E-value=1.4e-18 Score=166.73 Aligned_cols=202 Identities=18% Similarity=0.247 Sum_probs=153.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++|+|++|||||++|++++......+.+++.++|....+......+||...+. .|... .-...+.....++|||||
T Consensus 401 pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~--~~~g~le~a~~GtL~Lde 478 (686)
T PRK15429 401 TVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASA--QRIGRFELADKSSLFLDE 478 (686)
T ss_pred CEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCccccccccccc--chhhHHHhcCCCeEEEec
Confidence 699999999999999999999887678899999999876544455677765432 22111 112233444568999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE 177 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 177 (287)
++.++...|..|+++++++.+....+......++.+|++++...... .-++.|.++|..|+..
T Consensus 479 i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~-----------------~~~~~f~~~L~~~l~~ 541 (686)
T PRK15429 479 VGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM-----------------VADREFRSDLYYRLNV 541 (686)
T ss_pred hhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHH-----------------HHcCcccHHHHhccCe
Confidence 99999999999999999887654333333335788999998754321 1134688899999864
Q ss_pred e-EEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEE-EeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 178 V-IVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMEL-TVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 178 ~-i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~-~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
. |.+||+. .+|+..++.+++.++..+. +..+ .+++++++.+..+.|+. ++|+|++++++++.
T Consensus 542 ~~i~lPpLreR~~Di~~L~~~~l~~~~~~~---~~~~~~~s~~al~~L~~y~WPG--NvrEL~~~i~~a~~ 607 (686)
T PRK15429 542 FPIHLPPLRERPEDIPLLVKAFTFKIARRM---GRNIDSIPAETLRTLSNMEWPG--NVRELENVIERAVL 607 (686)
T ss_pred eEEeCCChhhhHhHHHHHHHHHHHHHHHHc---CCCCCCcCHHHHHHHHhCCCCC--cHHHHHHHHHHHHH
Confidence 4 9999999 6789999999998876655 3233 59999999999999966 55999999998876
No 38
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=1.8e-18 Score=142.75 Aligned_cols=163 Identities=20% Similarity=0.273 Sum_probs=120.1
Q ss_pred ccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh
Q 047225 8 VGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH 87 (287)
Q Consensus 8 ~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (287)
.+++..+..+.|++|+||||.||||||..+|+++. ..+..-....... .+.+...+..
T Consensus 43 ~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg---vn~k~tsGp~leK-------------------~gDlaaiLt~ 100 (332)
T COG2255 43 KAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG---VNLKITSGPALEK-------------------PGDLAAILTN 100 (332)
T ss_pred HHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc---CCeEecccccccC-------------------hhhHHHHHhc
Confidence 34455667778999999999999999999999993 2222111111111 1344444444
Q ss_pred -CCcEEEEEcCcccccHHHHHHHHHhhcCcee--ecCCC-----ceeeccceEEEEeecCCchhhhhhccCCchHHHHHH
Q 047225 88 -RPHSVILFDEIEKAHRDVLNVMLQLLDDGRV--TDGKG-----QTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGV 159 (287)
Q Consensus 88 -~~~~il~iDeid~~~~~~~~~L~~~l~~~~~--~~~~g-----~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~ 159 (287)
.+++|+|||||+++.+.+.+.|...|++-.+ .++.| ..++++.+.+|.+|....
T Consensus 101 Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G------------------ 162 (332)
T COG2255 101 LEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG------------------ 162 (332)
T ss_pred CCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc------------------
Confidence 3456999999999999999999999998653 23322 356668888888776543
Q ss_pred HHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 160 AEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 160 ~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
.++.+|.+||+....+..++.+|+.+|+.+.-.. +.+.++++....|+..+
T Consensus 163 ------~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~---------l~i~i~~~~a~eIA~rS 213 (332)
T COG2255 163 ------MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI---------LGIEIDEEAALEIARRS 213 (332)
T ss_pred ------cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH---------hCCCCChHHHHHHHHhc
Confidence 4567899999999999999999999999555322 26789999999999875
No 39
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.79 E-value=1.1e-17 Score=147.31 Aligned_cols=152 Identities=21% Similarity=0.347 Sum_probs=116.3
Q ss_pred CcEEEEEcCcccccH------------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHH
Q 047225 89 PHSVILFDEIEKAHR------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQME 156 (287)
Q Consensus 89 ~~~il~iDeid~~~~------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~ 156 (287)
.++||||||+|++.. ++|..|+++++...+.... ..++-.+..||+++.-.... +
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~-~~v~T~~ILFI~~GAF~~~k------------p 313 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKY-GMVKTDHILFIAAGAFQLAK------------P 313 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecc-eeEECCceeEEecCCcCCCC------------h
Confidence 457999999998643 4899999999976555433 35677788999877532110 0
Q ss_pred HHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHH----HHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccC-----
Q 047225 157 RGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIV----DIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYN----- 227 (287)
Q Consensus 157 ~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il----~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~----- 227 (287)
.-+-|+|..||+..+.+.+++.+++..|+ ...+.++...+...+..+.++++++..|+..++.
T Consensus 314 --------~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~ 385 (441)
T TIGR00390 314 --------SDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKT 385 (441)
T ss_pred --------hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccc
Confidence 12459999999999999999999999999 3567777777777899999999999999998776
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEE
Q 047225 228 PSYGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMD 265 (287)
Q Consensus 228 ~~~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 265 (287)
.+.|+|.|+..+++++.... +...-...+.+.|+
T Consensus 386 ~~iGAR~LrtilE~~l~d~~----fe~p~~~~~~v~I~ 419 (441)
T TIGR00390 386 ENIGARRLHTVLERLLEDIS----FEAPDLSGQNITID 419 (441)
T ss_pred cccchhhHHHHHHHHHHHHH----hcCCCCCCCEEEEC
Confidence 69999999999998888544 43333334555554
No 40
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.78 E-value=1.7e-17 Score=141.28 Aligned_cols=149 Identities=24% Similarity=0.327 Sum_probs=109.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCC---------------------cccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYV---------------------GFEN 77 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 77 (287)
+++|.||||||||++|+.+|+.+ +.+++.++|....+. .+++|...++. .+.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~~---~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 95 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELTT---SDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWV- 95 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCCH---HHHhhhhcccchhhHHHHHHHHhhhhhcccceeec-
Confidence 69999999999999999999977 778888988764332 23333322111 111
Q ss_pred hhhHHHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCC----ceee-ccceEEEEeecCCchhhhhhccCCc
Q 047225 78 GGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKG----QTVD-LKNTIIIMTSNIGDSVIARESILGS 152 (287)
Q Consensus 78 ~~~~~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g----~~i~-~~~~~iI~t~n~~~~~~~~~~~~~~ 152 (287)
.+.+..++..+ +++++||+|++++++++.|+.+++++.+..+++ ..+. .+++++|+|+|+.....
T Consensus 96 ~g~l~~A~~~g--~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g-------- 165 (262)
T TIGR02640 96 DNRLTLAVREG--FTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG-------- 165 (262)
T ss_pred CchHHHHHHcC--CEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc--------
Confidence 23455555544 499999999999999999999999998776542 3333 36889999999863221
Q ss_pred hHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHH
Q 047225 153 DQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIM 196 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~ 196 (287)
...++++|.+|| ..+.++.|+.++..+|+...
T Consensus 166 -----------~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 166 -----------VHETQDALLDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred -----------eecccHHHHhhc-EEEECCCCCHHHHHHHHHHh
Confidence 113467899999 88999999999999998654
No 41
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.78 E-value=3e-18 Score=158.16 Aligned_cols=204 Identities=19% Similarity=0.239 Sum_probs=155.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
++++.|++||||+++|+.++........+++.++|..+.+......+||...+. .|... .-...+.....+.+||||
T Consensus 163 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~--~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 163 SVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANT--IRQGRFEQADGGTLFLDE 240 (469)
T ss_pred eEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCc--CCCCCeeECCCCEEEEec
Confidence 699999999999999999999887778899999999887655566788876552 22221 111223334457999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC-
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID- 176 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~- 176 (287)
++.++...|..|+++++++.+....+......++.+|+|++...... .-++.|.++|..|+.
T Consensus 241 i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~-----------------~~~~~~~~~L~~~l~~ 303 (469)
T PRK10923 241 IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQR-----------------VQEGKFREDLFHRLNV 303 (469)
T ss_pred cccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHH-----------------HHcCCchHHHHHHhcc
Confidence 99999999999999999987765444333335789999998653221 123468899999995
Q ss_pred ceEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 177 EVIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 177 ~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
..|.+||+. .+|+..++.+++.++....... ...++++++..|..+.|+. ++|+|++++++++..
T Consensus 304 ~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpg--Nv~eL~~~i~~~~~~ 370 (469)
T PRK10923 304 IRVHLPPLRERREDIPRLARHFLQVAARELGVE--AKLLHPETEAALTRLAWPG--NVRQLENTCRWLTVM 370 (469)
T ss_pred eeecCCCcccchhhHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHHhCCCCC--hHHHHHHHHHHHHHh
Confidence 559999999 6799999999998876654221 2469999999999999966 559999999988764
No 42
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.77 E-value=1.2e-17 Score=143.53 Aligned_cols=195 Identities=17% Similarity=0.218 Sum_probs=131.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCC-----CC--CcccchhhHHHHHHhCCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPP-----GY--VGFENGGQLTEAVRHRPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~ 91 (287)
+++|.||||||||++++.+|+.+ +.+++.++++..... .+++|... +. ..+ ..+.+..++..+ .
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~---~DliG~~~~~l~~g~~~~~f-~~GpL~~A~~~g--~ 136 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSR---IDLVGKDAIVLKDGKQITEF-RDGILPWALQHN--V 136 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCCh---hhcCCCceeeccCCcceeEE-ecCcchhHHhCC--e
Confidence 69999999999999999999999 788999999776544 34444321 11 111 223455555544 5
Q ss_pred EEEEcCcccccHHHHHHHHHhhcC-ceeecCC-Cceeec-cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCC
Q 047225 92 VILFDEIEKAHRDVLNVMLQLLDD-GRVTDGK-GQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFR 168 (287)
Q Consensus 92 il~iDeid~~~~~~~~~L~~~l~~-~~~~~~~-g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
++++||+|+++++++..|..+++. +.+...+ +..+.. +++++|+|+|+...+-...-+.| .+.++
T Consensus 137 illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~G------------t~~l~ 204 (327)
T TIGR01650 137 ALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHG------------TQQIN 204 (327)
T ss_pred EEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceee------------eecCC
Confidence 899999999999999999999994 5777654 677744 58999999998542110000000 13568
Q ss_pred hhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh-----------ccCCCCCchhHHH
Q 047225 169 PEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE-----------GYNPSYGARPLRR 237 (287)
Q Consensus 169 ~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~-----------~~~~~~~~r~l~~ 237 (287)
.++++||...+.+.+|+.++..+|+....... ....++++++++++. ......+.|.+.+
T Consensus 205 ~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~---------~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~li~ 275 (327)
T TIGR01650 205 QAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGF---------DDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRTVIT 275 (327)
T ss_pred HHHHhheeeEeeCCCCCHHHHHHHHHhhccCC---------CccchHHHHHHHHHHHHHHHhhhccCCccccccHHHHHH
Confidence 89999995567899999999999986543111 000123444444322 1223457788888
Q ss_pred HHHHHH
Q 047225 238 AIGRLL 243 (287)
Q Consensus 238 ~i~~~~ 243 (287)
|.....
T Consensus 276 w~~~~~ 281 (327)
T TIGR01650 276 WAENAE 281 (327)
T ss_pred HHHHHH
Confidence 876543
No 43
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.77 E-value=4.7e-18 Score=134.63 Aligned_cols=150 Identities=21% Similarity=0.325 Sum_probs=107.3
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHH
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLT 82 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 82 (287)
+.++..+..+ . +++|+|++||||+.+|+++++.......+++.+||+.+.+......+||...+. .+... .-.
T Consensus 13 ~~~~~~a~~~---~-pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~--~~~ 86 (168)
T PF00158_consen 13 EQAKRAASSD---L-PVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARS--DKK 86 (168)
T ss_dssp HHHHHHTTST---S--EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSS--EBE
T ss_pred HHHHHHhCCC---C-CEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcccccccccccc--ccC
Confidence 3445555554 2 699999999999999999999887778999999999998776667899876543 22222 122
Q ss_pred HHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 83 EAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 83 ~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
..+.....++|||||++.+++.+|..|+++++++.+....+......++++|++|+.+.... .
T Consensus 87 G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~-----------------v 149 (168)
T PF00158_consen 87 GLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEEL-----------------V 149 (168)
T ss_dssp HHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHH-----------------H
T ss_pred CceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHH-----------------H
Confidence 56666677899999999999999999999999988765444333345899999998753322 2
Q ss_pred HHhcCChhHHhccC
Q 047225 163 LRRRFRPEFLNRID 176 (287)
Q Consensus 163 ~~~~~~~~l~~r~~ 176 (287)
-++.|.++|..|+.
T Consensus 150 ~~g~fr~dLy~rL~ 163 (168)
T PF00158_consen 150 EQGRFREDLYYRLN 163 (168)
T ss_dssp HTTSS-HHHHHHHT
T ss_pred HcCCChHHHHHHhc
Confidence 23579999999983
No 44
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.76 E-value=5.7e-18 Score=155.33 Aligned_cols=204 Identities=20% Similarity=0.231 Sum_probs=153.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCC-cccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYV-GFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++++|++||||+++|+.++........+++.++|....+......+||...+.. |... .....+.....++|||||
T Consensus 164 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 164 TVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVK--QTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCcc--CCCCceeECCCCEEEEec
Confidence 5899999999999999999998876678999999998876555566777654432 2111 112233344567999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC-
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID- 176 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~- 176 (287)
++.+++..|..|+++++++.+....+..-...++.+|++++...... .-++.|.++|..|+.
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~-----------------~~~~~~~~~L~~~l~~ 304 (445)
T TIGR02915 242 IGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRM-----------------IAEGTFREDLFYRIAE 304 (445)
T ss_pred hhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHH-----------------HHcCCccHHHHHHhcc
Confidence 99999999999999999887654333333334789999998753321 113468889998885
Q ss_pred ceEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 177 EVIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 177 ~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
..|.+||+. .+|+..++.+++.++....... ...++++++..+..+.|+. ++|+|++.+++++..
T Consensus 305 ~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpg--NvreL~~~i~~a~~~ 371 (445)
T TIGR02915 305 ISITIPPLRSRDGDAVLLANAFLERFARELKRK--TKGFTDDALRALEAHAWPG--NVRELENKVKRAVIM 371 (445)
T ss_pred ceecCCCchhchhhHHHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHhCCCCC--hHHHHHHHHHHHHHh
Confidence 449999999 6789999999998876655321 2579999999999999965 569999999988863
No 45
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.76 E-value=1.4e-17 Score=135.95 Aligned_cols=170 Identities=26% Similarity=0.417 Sum_probs=118.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||.+|++||+.. ..+++.++..+.. |...|. |....+.+.+..+....+|+||||+
T Consensus 153 nVLFyGppGTGKTm~Akalane~---kvp~l~vkat~li---------GehVGd-gar~Ihely~rA~~~aPcivFiDE~ 219 (368)
T COG1223 153 NVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELI---------GEHVGD-GARRIHELYERARKAAPCIVFIDEL 219 (368)
T ss_pred eeEEECCCCccHHHHHHHHhccc---CCceEEechHHHH---------HHHhhh-HHHHHHHHHHHHHhcCCeEEEehhh
Confidence 69999999999999999999988 6778777765433 322221 2223456777777777799999999
Q ss_pred ccc--cH----------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 99 EKA--HR----------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 99 d~~--~~----------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
|.+ +. ++.++|++-|+.-.. -..+..|++||.+. .
T Consensus 220 DAiaLdRryQelRGDVsEiVNALLTelDgi~e---------neGVvtIaaTN~p~------------------------~ 266 (368)
T COG1223 220 DAIALDRRYQELRGDVSEIVNALLTELDGIKE---------NEGVVTIAATNRPE------------------------L 266 (368)
T ss_pred hhhhhhhhHHHhcccHHHHHHHHHHhccCccc---------CCceEEEeecCChh------------------------h
Confidence 953 22 466777777764221 12457888888753 4
Q ss_pred CChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHH-HHHHHHHH
Q 047225 167 FRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRR-AIGRLLED 245 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~-~i~~~~~~ 245 (287)
++++..+||-..|.|.-|+.++..+|+..++.++ ++.++.. +++++.. ..+++.|+++. .+..+++.
T Consensus 267 LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~---------Plpv~~~-~~~~~~~--t~g~SgRdikekvlK~aLh~ 334 (368)
T COG1223 267 LDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF---------PLPVDAD-LRYLAAK--TKGMSGRDIKEKVLKTALHR 334 (368)
T ss_pred cCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC---------CCccccC-HHHHHHH--hCCCCchhHHHHHHHHHHHH
Confidence 5789999998889999999999999998887654 4444444 6666654 33456677653 34444443
Q ss_pred H
Q 047225 246 N 246 (287)
Q Consensus 246 ~ 246 (287)
+
T Consensus 335 A 335 (368)
T COG1223 335 A 335 (368)
T ss_pred H
Confidence 3
No 46
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.75 E-value=4e-17 Score=151.55 Aligned_cols=204 Identities=22% Similarity=0.276 Sum_probs=135.9
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhc-------CCCCceEEeccccc--ccccchhhhhCCC--CC
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYF-------GSKEAMVRIDMSEY--MEKHTVSKFFGSP--PG 71 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~ 71 (287)
++.++..+..+. +. +++|+||||||||++|+.+++... ....+++.++|... .+......+++.. +.
T Consensus 74 i~~l~~al~~~~-~~-~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~ 151 (531)
T TIGR02902 74 IKALKAALCGPN-PQ-HVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPI 151 (531)
T ss_pred HHHHHHHHhCCC-Cc-eEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccch
Confidence 444554444332 33 799999999999999999987531 12467889998642 1111112233321 11
Q ss_pred CCc-----ccc-hhhHHHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCC------Cce-----------eec
Q 047225 72 YVG-----FEN-GGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGK------GQT-----------VDL 128 (287)
Q Consensus 72 ~~~-----~~~-~~~~~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~------g~~-----------i~~ 128 (287)
+.+ ... ...-...+...++++|||||++.+++..|+.|+++++++.+.... +.. -..
T Consensus 152 ~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (531)
T TIGR02902 152 YQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLP 231 (531)
T ss_pred hccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcc
Confidence 111 000 001123455556789999999999999999999999987654321 110 012
Q ss_pred cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcC
Q 047225 129 KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKN 208 (287)
Q Consensus 129 ~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~ 208 (287)
.++++|++|+..+. .+++++.+|+ ..+.|+|++.+++.++++..+++.
T Consensus 232 ~d~rlI~ATt~~p~-----------------------~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k~-------- 279 (531)
T TIGR02902 232 ADFRLIGATTRNPE-----------------------EIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEKI-------- 279 (531)
T ss_pred cceEEEEEecCCcc-----------------------cCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHHc--------
Confidence 36778877765443 3578999999 789999999999999998776542
Q ss_pred cEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 209 MELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 209 ~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
.+.+++++++.+..++| +.|++.+.++.+...
T Consensus 280 -~i~is~~al~~I~~y~~----n~Rel~nll~~Aa~~ 311 (531)
T TIGR02902 280 -GINLEKHALELIVKYAS----NGREAVNIVQLAAGI 311 (531)
T ss_pred -CCCcCHHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence 36799999999988776 458888888876653
No 47
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.9e-17 Score=148.48 Aligned_cols=173 Identities=25% Similarity=0.343 Sum_probs=125.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||++|+++|+.. +..++.+.+.+.... .+|.. -...+.++...+....+|+||||+
T Consensus 470 GVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~sk-----~vGeS-----Er~ir~iF~kAR~~aP~IiFfDEi 536 (693)
T KOG0730|consen 470 GVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFSK-----YVGES-----ERAIREVFRKARQVAPCIIFFDEI 536 (693)
T ss_pred eEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHHHH-----hcCch-----HHHHHHHHHHHhhcCCeEEehhhH
Confidence 49999999999999999999998 777888877554432 11110 001245677777766799999999
Q ss_pred ccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|-+ ...+++.|++-|+.... ..+++||++||.+. .+
T Consensus 537 Dsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~---------~k~V~ViAATNRpd------------------------~I 583 (693)
T KOG0730|consen 537 DALAGSRGGSSSGVTDRVLSQLLTEMDGLEA---------LKNVLVIAATNRPD------------------------MI 583 (693)
T ss_pred HhHhhccCCCccchHHHHHHHHHHHcccccc---------cCcEEEEeccCChh------------------------hc
Confidence 943 34567777777764211 13678999999975 35
Q ss_pred ChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChh-HHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 168 RPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHT-FKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 168 ~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~-~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
+++|++ |||..|++|+|+.+...+|++...++. .++++ -++.|+..+ ..++..++...|+++..
T Consensus 584 D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm-----------p~~~~vdl~~La~~T--~g~SGAel~~lCq~A~~ 650 (693)
T KOG0730|consen 584 DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM-----------PFSEDVDLEELAQAT--EGYSGAEIVAVCQEAAL 650 (693)
T ss_pred CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC-----------CCCccccHHHHHHHh--ccCChHHHHHHHHHHHH
Confidence 789997 999999999999999999997776532 34444 556666643 34567899999999888
Q ss_pred HHHHHH
Q 047225 245 DNLAEI 250 (287)
Q Consensus 245 ~~~~~~ 250 (287)
-++.+.
T Consensus 651 ~a~~e~ 656 (693)
T KOG0730|consen 651 LALRES 656 (693)
T ss_pred HHHHHh
Confidence 776554
No 48
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.74 E-value=1.2e-17 Score=139.38 Aligned_cols=172 Identities=19% Similarity=0.243 Sum_probs=119.6
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC-CceEEe--cccccccccchhhhhCCCCCCCcccchhh
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK-EAMVRI--DMSEYMEKHTVSKFFGSPPGYVGFENGGQ 80 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
..+++.+... ..++++|+||||||||+.++++++.+.... .+.... +.++..-..- .......
T Consensus 46 ~~L~~a~~~~--~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisv------------vr~Kik~ 111 (346)
T KOG0989|consen 46 QVLKNALLRR--ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISV------------VREKIKN 111 (346)
T ss_pred HHHHHHHhhc--CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccc------------hhhhhcC
Confidence 3445555553 344899999999999999999999996522 222222 2222111110 0000001
Q ss_pred HHHH---------HHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCC
Q 047225 81 LTEA---------VRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILG 151 (287)
Q Consensus 81 ~~~~---------~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~ 151 (287)
+.+. ....++.|++|||.|-++.+.|.+|++.|++.. ...+||+.||.-.
T Consensus 112 fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s-----------~~trFiLIcnyls---------- 170 (346)
T KOG0989|consen 112 FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFS-----------RTTRFILICNYLS---------- 170 (346)
T ss_pred HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccc-----------cceEEEEEcCChh----------
Confidence 1110 011245899999999999999999999999721 2457999998753
Q ss_pred chHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCC
Q 047225 152 SDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYG 231 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 231 (287)
++.+.+.+|+ ..+.|+++..+++...++....+. .+.+++++++.|+..+.
T Consensus 171 --------------rii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E---------~v~~d~~al~~I~~~S~----- 221 (346)
T KOG0989|consen 171 --------------RIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKE---------GVDIDDDALKLIAKISD----- 221 (346)
T ss_pred --------------hCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHHcC-----
Confidence 4568899999 999999999999888887776543 57899999999999864
Q ss_pred chhHHHHHH
Q 047225 232 ARPLRRAIG 240 (287)
Q Consensus 232 ~r~l~~~i~ 240 (287)
.++|+++.
T Consensus 222 -GdLR~Ait 229 (346)
T KOG0989|consen 222 -GDLRRAIT 229 (346)
T ss_pred -CcHHHHHH
Confidence 68888887
No 49
>PLN03025 replication factor C subunit; Provisional
Probab=99.74 E-value=5.4e-17 Score=142.31 Aligned_cols=170 Identities=19% Similarity=0.307 Sum_probs=117.1
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC--CceEEecccccccccchhhhhCCCCCCCcccchhh
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK--EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQ 80 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
++.++..+.+.+.| +++|+||||||||++++++++.+.... ..+..++.++......+...
T Consensus 22 ~~~L~~~~~~~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~--------------- 84 (319)
T PLN03025 22 VSRLQVIARDGNMP--NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNK--------------- 84 (319)
T ss_pred HHHHHHHHhcCCCc--eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHH---------------
Confidence 34455555554433 799999999999999999999985432 22344444332111111111
Q ss_pred HHHHHH------hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchH
Q 047225 81 LTEAVR------HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQ 154 (287)
Q Consensus 81 ~~~~~~------~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~ 154 (287)
+..... .+.+.+++|||+|.++...+++|++.++... ..+.+|+++|...
T Consensus 85 i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~-----------~~t~~il~~n~~~------------- 140 (319)
T PLN03025 85 IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYS-----------NTTRFALACNTSS------------- 140 (319)
T ss_pred HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhccc-----------CCceEEEEeCCcc-------------
Confidence 111111 1345799999999999999999999998521 2346888888643
Q ss_pred HHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchh
Q 047225 155 MERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARP 234 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~ 234 (287)
.+.+++.+|+ ..+.|++++.+++.+++...+.+. .+.++++++++++..+. ++
T Consensus 141 -----------~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~e---------gi~i~~~~l~~i~~~~~------gD 193 (319)
T PLN03025 141 -----------KIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAE---------KVPYVPEGLEAIIFTAD------GD 193 (319)
T ss_pred -----------ccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC------CC
Confidence 2347899999 899999999999999997766542 46789999999998754 56
Q ss_pred HHHHHH
Q 047225 235 LRRAIG 240 (287)
Q Consensus 235 l~~~i~ 240 (287)
++++++
T Consensus 194 lR~aln 199 (319)
T PLN03025 194 MRQALN 199 (319)
T ss_pred HHHHHH
Confidence 777766
No 50
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.73 E-value=4.7e-17 Score=149.78 Aligned_cols=204 Identities=17% Similarity=0.260 Sum_probs=151.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCC-cccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYV-GFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
++++.|++||||+++|+.++........+++.++|....+......+||...+.. |... .-...+.....++|||||
T Consensus 168 ~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~ld~ 245 (457)
T PRK11361 168 SVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQT--LRQGLFERANEGTLLLDE 245 (457)
T ss_pred EEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCC--CCCCceEECCCCEEEEec
Confidence 6999999999999999999998876778999999998876555567787654422 1111 011223334557999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC-
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID- 176 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~- 176 (287)
++.+++..|..|+.+++++.+....+......++.+|++++....... -++.|.++|..|+.
T Consensus 246 i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~-----------------~~g~~~~~l~~~l~~ 308 (457)
T PRK11361 246 IGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMV-----------------KEGTFREDLFYRLNV 308 (457)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHH-----------------HcCCchHHHHHHhcc
Confidence 999999999999999998775533332222347889999987543211 13468888998885
Q ss_pred ceEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 177 EVIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 177 ~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
..|.+||+. .+|+..++..++.++....... .+.+++++++.+..+.|+. ++|++++.+++++..
T Consensus 309 ~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpg--Nv~eL~~~~~~~~~~ 375 (457)
T PRK11361 309 IHLILPPLRDRREDISLLANHFLQKFSSENQRD--IIDIDPMAMSLLTAWSWPG--NIRELSNVIERAVVM 375 (457)
T ss_pred ceecCCChhhchhhHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHHcCCCCC--cHHHHHHHHHHHHHh
Confidence 449999998 6788889999988876544211 2579999999999999966 569999999988753
No 51
>PRK15115 response regulator GlrR; Provisional
Probab=99.73 E-value=4.8e-17 Score=149.20 Aligned_cols=203 Identities=18% Similarity=0.240 Sum_probs=150.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCC-cccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYV-GFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
++++.|++||||+++|+.++......+.+++.++|....+......+||...+.. |... .-...+.....++|||||
T Consensus 159 ~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 159 SVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVS--NREGLFQAAEGGTLFLDE 236 (444)
T ss_pred eEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCcc--CCCCcEEECCCCEEEEEc
Confidence 6999999999999999999998876778999999998866555556777654422 1111 111223333457999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE 177 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 177 (287)
++.+++..|..|+++++++.+..-.+......++.+|++++...... ..++.|.++|..|+..
T Consensus 237 i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~-----------------~~~~~f~~~l~~~l~~ 299 (444)
T PRK15115 237 IGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKA-----------------MARGEFREDLYYRLNV 299 (444)
T ss_pred cccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHH-----------------HHcCCccHHHHHhhce
Confidence 99999999999999999887643222222234788999988643211 1234788999999864
Q ss_pred -eEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 178 -VIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 178 -~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
.|.+||+. .+|+..++.+++.++...... ....+++++++.|..+.|+. ++|++++.+++++.
T Consensus 300 ~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~--~~~~~~~~a~~~L~~~~Wpg--NvreL~~~i~~~~~ 365 (444)
T PRK15115 300 VSLKIPALAERTEDIPLLANHLLRQAAERHKP--FVRAFSTDAMKRLMTASWPG--NVRQLVNVIEQCVA 365 (444)
T ss_pred eeecCCChHhccccHHHHHHHHHHHHHHHhCC--CCCCcCHHHHHHHHhCCCCC--hHHHHHHHHHHHHH
Confidence 49999999 568899999999887554421 12369999999999999966 56999999998775
No 52
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.72 E-value=1.8e-16 Score=139.54 Aligned_cols=171 Identities=20% Similarity=0.274 Sum_probs=116.7
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh-CCcEE
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH-RPHSV 92 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i 92 (287)
+.+.++++|+||||||||++++.+++.+ +..+...+....... ..+...+.. ....+
T Consensus 48 ~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~~-------------------~~l~~~l~~l~~~~v 105 (328)
T PRK00080 48 GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEKP-------------------GDLAAILTNLEEGDV 105 (328)
T ss_pred CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccCh-------------------HHHHHHHHhcccCCE
Confidence 4444579999999999999999999998 333433332211111 122222222 23469
Q ss_pred EEEcCcccccHHHHHHHHHhhcCceee--cCCCc-----eeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHh
Q 047225 93 ILFDEIEKAHRDVLNVMLQLLDDGRVT--DGKGQ-----TVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRR 165 (287)
Q Consensus 93 l~iDeid~~~~~~~~~L~~~l~~~~~~--~~~g~-----~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (287)
+||||++.++...++.|+..+++.... ..++. ....+.+.+|+++|...
T Consensus 106 l~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~------------------------ 161 (328)
T PRK00080 106 LFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG------------------------ 161 (328)
T ss_pred EEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcc------------------------
Confidence 999999999999999999998876432 21211 12335677888887642
Q ss_pred cCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 166 RFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 166 ~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
.++++|.+||+..+.+++++.+++.++++...... .+.++++++++|+..+. .++|.+...+.+.
T Consensus 162 ~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~---------~~~~~~~~~~~ia~~~~---G~pR~a~~~l~~~ 226 (328)
T PRK00080 162 LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL---------GVEIDEEGALEIARRSR---GTPRIANRLLRRV 226 (328)
T ss_pred cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc---------CCCcCHHHHHHHHHHcC---CCchHHHHHHHHH
Confidence 34678999998889999999999999997665431 46789999999998753 2335555555543
No 53
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.6e-16 Score=143.04 Aligned_cols=188 Identities=17% Similarity=0.233 Sum_probs=118.7
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC----ceEEe-cccccccccchhhhhC-CCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE----AMVRI-DMSEYMEKHTVSKFFG-SPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~----~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~ 77 (287)
..++..+....-+ +.++|+||+|||||++|+.+|+.+..... ++..+ .|..+.... ...++. ......|.+.
T Consensus 28 ~~L~~~i~~~ri~-ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~-~~dviEIdaas~~gVd~ 105 (484)
T PRK14956 28 GALQNALKSGKIG-HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGI-SSDVLEIDAASNRGIEN 105 (484)
T ss_pred HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccC-CccceeechhhcccHHH
Confidence 4455555554322 34899999999999999999999843211 11100 011111000 000000 0011122222
Q ss_pred hhhHHHHHH----hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVR----HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~----~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+. .+.+.|+||||+|.++.+.+++|++.+++.. .+++||++|+...
T Consensus 106 IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp-----------~~viFILaTte~~------------ 162 (484)
T PRK14956 106 IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPP-----------AHIVFILATTEFH------------ 162 (484)
T ss_pred HHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCC-----------CceEEEeecCChh------------
Confidence 233333332 2456799999999999999999999998731 3557888777532
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCch
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r 233 (287)
.+.+.+++|| ..+.|.+++.+++.+.+++.+... ++.++++++..|+..+. +++|
T Consensus 163 ------------kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~E---------gi~~e~eAL~~Ia~~S~---Gd~R 217 (484)
T PRK14956 163 ------------KIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIE---------NVQYDQEGLFWIAKKGD---GSVR 217 (484)
T ss_pred ------------hccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---ChHH
Confidence 3568999999 999999999999998887776542 46789999999998764 3344
Q ss_pred hHHHHHHH
Q 047225 234 PLRRAIGR 241 (287)
Q Consensus 234 ~l~~~i~~ 241 (287)
+.-..++.
T Consensus 218 dAL~lLeq 225 (484)
T PRK14956 218 DMLSFMEQ 225 (484)
T ss_pred HHHHHHHH
Confidence 44444443
No 54
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.72 E-value=3.5e-16 Score=133.02 Aligned_cols=200 Identities=20% Similarity=0.317 Sum_probs=159.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
++++.|.+||||..+|++-+........++..+||....+.....++||..+|..|.. .+......+.+|+|||
T Consensus 229 PLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~------GffE~AngGTVlLDeI 302 (511)
T COG3283 229 PLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKK------GFFEQANGGTVLLDEI 302 (511)
T ss_pred CeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCcc------chhhhccCCeEEeehh
Confidence 5999999999999999999999888889999999999998888899999888743321 2233334569999999
Q ss_pred ccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc-
Q 047225 99 EKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE- 177 (287)
Q Consensus 99 d~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~- 177 (287)
..+++..|..|++++++|.+.--....=-+.++.||++|..+-..+ .-+..|..+|+.|+.-
T Consensus 303 gEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~l-----------------v~~g~fReDLfyRLNVL 365 (511)
T COG3283 303 GEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVEL-----------------VQKGKFREDLFYRLNVL 365 (511)
T ss_pred hhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHH-----------------HhcCchHHHHHHHhhee
Confidence 9999999999999999998875432222235889999997653221 1245788999999963
Q ss_pred eEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 178 VIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 178 ~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
++.+||+. .+++..+.+.++.+++..+.-- ...++.+.+.++.++.|+. ++|++.+.+-+++..
T Consensus 366 tl~~PpLRer~~di~pL~e~Fv~q~s~elg~p--~pkl~~~~~~~L~~y~WpG--NVRqL~N~iyRA~s~ 431 (511)
T COG3283 366 TLNLPPLRERPQDIMPLAELFVQQFSDELGVP--RPKLAADLLTVLTRYAWPG--NVRQLKNAIYRALTL 431 (511)
T ss_pred eecCCccccCcccchHHHHHHHHHHHHHhCCC--CCccCHHHHHHHHHcCCCc--cHHHHHHHHHHHHHH
Confidence 38999998 6789999999999888877421 3689999999999999966 568999888877763
No 55
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.72 E-value=2.7e-17 Score=126.88 Aligned_cols=131 Identities=31% Similarity=0.519 Sum_probs=88.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++++.+++.+ +.++..++++...+...+........+...+.. +.+..++. ...+++|||+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~-~~l~~a~~--~~~il~lDEi 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKD-GPLVRAMR--KGGILVLDEI 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE--CCCTTHH--EEEEEEESSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceeeeeeccccccccc-cccccccc--ceeEEEECCc
Confidence 58999999999999999999999 788888888776655332222211122222222 23443444 3369999999
Q ss_pred ccccHHHHHHHHHhhcCceeecCC-Cceeecc-------ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 99 EKAHRDVLNVMLQLLDDGRVTDGK-GQTVDLK-------NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 99 d~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~~-------~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
++++++++..|..+++.+.+.... +.....+ ++.+|+|+|+.... ...++++
T Consensus 75 n~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~--------------------~~~l~~a 134 (139)
T PF07728_consen 75 NRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKG--------------------RKELSPA 134 (139)
T ss_dssp GG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST----------------------TTTTCHH
T ss_pred ccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCC--------------------cCcCCHH
Confidence 999999999999999999877655 3444333 38999999997622 2367899
Q ss_pred HHhcc
Q 047225 171 FLNRI 175 (287)
Q Consensus 171 l~~r~ 175 (287)
|++||
T Consensus 135 l~~Rf 139 (139)
T PF07728_consen 135 LLDRF 139 (139)
T ss_dssp HHTT-
T ss_pred HHhhC
Confidence 99997
No 56
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.72 E-value=1.7e-16 Score=146.36 Aligned_cols=205 Identities=18% Similarity=0.245 Sum_probs=154.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
++++.|++||||++++++++........+++.++|....+......+||...+. .+... .-...+.....++|||||
T Consensus 159 ~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 159 TVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANT--RRQGRFEQADGGTLFLDE 236 (463)
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCccc--CCCCcEEECCCCeEEEEc
Confidence 599999999999999999999887678899999999886554455677765432 22111 111223334457999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE 177 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 177 (287)
++.++...|..|+++++++.+....+......++.+|++++...... .-++.|.++|+.|+..
T Consensus 237 i~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~-----------------~~~~~f~~~L~~rl~~ 299 (463)
T TIGR01818 237 IGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEAL-----------------VRQGKFREDLFHRLNV 299 (463)
T ss_pred hhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHH-----------------HHcCCcHHHHHHHhCc
Confidence 99999999999999999987665444333334778999998764321 1124678899999864
Q ss_pred -eEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 047225 178 -VIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDN 246 (287)
Q Consensus 178 -~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~ 246 (287)
.|.+||+. .+|+..++.+++.++....... ...++++++..|..+.|+. ++|+|++.+++++..+
T Consensus 300 ~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpg--NvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 300 IRIHLPPLRERREDIPRLARHFLALAARELDVE--PKLLDPEALERLKQLRWPG--NVRQLENLCRWLTVMA 367 (463)
T ss_pred ceecCCCcccchhhHHHHHHHHHHHHHHHhCCC--CCCcCHHHHHHHHhCCCCC--hHHHHHHHHHHHHHhC
Confidence 69999999 8899999999998876654221 2469999999999999966 5699999999887643
No 57
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.71 E-value=5.6e-18 Score=136.17 Aligned_cols=162 Identities=21% Similarity=0.276 Sum_probs=70.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCC-ce---EEec-ccc------------ccc---ccchhhhhCCCCCCCcccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKE-AM---VRID-MSE------------YME---KHTVSKFFGSPPGYVGFEN 77 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~-~~---~~~~-~~~------------~~~---~~~~~~~~~~~~~~~~~~~ 77 (287)
++++++||||||||++|+.+...++.-.. .. ..+. ... +.. ..+...++|..
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg-------- 94 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPFRAPHHSASEAALIGGG-------- 94 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---EEEE-TT--HHHHHEEG--------
T ss_pred CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCcccCCCCcCHHHHhCCC--------
Confidence 47999999999999999999988843210 00 0000 000 000 00111122210
Q ss_pred hhhHHHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCC-Cceeecc-ceEEEEeecCCchhhhhhccCCchHH
Q 047225 78 GGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDLK-NTIIIMTSNIGDSVIARESILGSDQM 155 (287)
Q Consensus 78 ~~~~~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~ 155 (287)
...-...+...+++|||+||+..+++.+++.|++.+++|.+.... |..+.++ ++++|+|+||.+.+............
T Consensus 95 ~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs 174 (206)
T PF01078_consen 95 RPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCS 174 (206)
T ss_dssp GGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEEEE-S----------------
T ss_pred cCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEEEecccccccccccccccccc
Confidence 011234556667789999999999999999999999999988774 7777776 89999999999887654333335556
Q ss_pred HHHHHHHHHhcCChhHHhccCceEEeCCCCHHH
Q 047225 156 ERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQ 188 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~ 188 (287)
+.++..++. +++.++++|||..+.+++.+.++
T Consensus 175 ~~~~~~Y~~-rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 175 PRQIRRYQS-RLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp ---------------------------------
T ss_pred ccccccccc-cccccccccccccccccccccCC
Confidence 667766654 67889999999999999988654
No 58
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.71 E-value=5.2e-16 Score=141.74 Aligned_cols=169 Identities=21% Similarity=0.291 Sum_probs=118.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~iD 96 (287)
.++|+||||||||++|+++|+.+ +.+++.++++..... +.|.. ....++.......++|||||
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~~~------------~vGese~~l~~~f~~A~~~~P~IL~ID 325 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLFGG------------IVGESESRMRQMIRIAEALSPCILWID 325 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhccc------------ccChHHHHHHHHHHHHHhcCCcEEEeh
Confidence 59999999999999999999998 778888888653321 11111 12345555566667999999
Q ss_pred CcccccH------------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 97 EIEKAHR------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 97 eid~~~~------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|+|++-. .+...++..+++. ...++||+|||...
T Consensus 326 EID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-----------~~~V~vIaTTN~~~----------------------- 371 (489)
T CHL00195 326 EIDKAFSNSESKGDSGTTNRVLATFITWLSEK-----------KSPVFVVATANNID----------------------- 371 (489)
T ss_pred hhhhhhccccCCCCchHHHHHHHHHHHHHhcC-----------CCceEEEEecCChh-----------------------
Confidence 9996532 2334455555531 12457888898753
Q ss_pred hcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 165 RRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 165 ~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
.+++++++ ||+..+.++.|+.++..+|++.++.+... ....+.-++.++.. ..+++..++++++..+
T Consensus 372 -~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~--------~~~~~~dl~~La~~--T~GfSGAdI~~lv~eA 440 (489)
T CHL00195 372 -LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP--------KSWKKYDIKKLSKL--SNKFSGAEIEQSIIEA 440 (489)
T ss_pred -hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC--------CcccccCHHHHHhh--cCCCCHHHHHHHHHHH
Confidence 45788885 99999999999999999999888876311 11234446677765 3467779999998877
Q ss_pred HHHHH
Q 047225 243 LEDNL 247 (287)
Q Consensus 243 ~~~~~ 247 (287)
...+.
T Consensus 441 ~~~A~ 445 (489)
T CHL00195 441 MYIAF 445 (489)
T ss_pred HHHHH
Confidence 76554
No 59
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.69 E-value=5.3e-16 Score=130.06 Aligned_cols=163 Identities=13% Similarity=0.160 Sum_probs=110.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||+|||||++++++++.....+..+.++++...... ...+.+.+... .+|+|||+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~~~--dlliiDdi 106 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF------------------VPEVLEGMEQL--SLVCIDNI 106 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh------------------hHHHHHHhhhC--CEEEEeCh
Confidence 69999999999999999999987555556666666442210 01233333333 48999999
Q ss_pred cccc--HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC
Q 047225 99 EKAH--RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID 176 (287)
Q Consensus 99 d~~~--~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 176 (287)
+.+. +.++..|+.+++..... .+..+|+|++.++..+. .+.++|.+|+.
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~e~---------g~~~li~ts~~~p~~l~--------------------~~~~~L~SRl~ 157 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRILES---------GRTRLLITGDRPPRQLN--------------------LGLPDLASRLD 157 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHHHc---------CCCeEEEeCCCChHHcC--------------------cccHHHHHHHh
Confidence 9874 55666666666532110 12347777776554331 23589999995
Q ss_pred --ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 177 --EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 177 --~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
..+.+.||+.+++.++++..... . .+.++++++++|+.... .++|.+...++++
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a~~-------~--~~~l~~~v~~~L~~~~~---~d~r~l~~~l~~l 213 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRARL-------R--GFELPEDVGRFLLKRLD---REMRTLFMTLDQL 213 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHhhc---CCHHHHHHHHHHH
Confidence 67999999999999998654322 1 36899999999998753 3456777777754
No 60
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.69 E-value=1.3e-15 Score=132.92 Aligned_cols=165 Identities=19% Similarity=0.268 Sum_probs=111.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh-CCcEEEEEc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH-RPHSVILFD 96 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~iD 96 (287)
++++|+||||||||++++.+++.+. ..+........... ..+...+.. ....++|||
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~---~~~~~~~~~~~~~~-------------------~~l~~~l~~~~~~~vl~iD 88 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMG---VNLKITSGPALEKP-------------------GDLAAILTNLEEGDVLFID 88 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC---CCEEEeccchhcCc-------------------hhHHHHHHhcccCCEEEEe
Confidence 3799999999999999999999883 33333322211110 122222221 234699999
Q ss_pred CcccccHHHHHHHHHhhcCceee--cCCC-----ceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 97 EIEKAHRDVLNVMLQLLDDGRVT--DGKG-----QTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~~~~~--~~~g-----~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
|++.+++..++.|+.+++++... ...+ .....+.+.+|.++|... .+.+
T Consensus 89 Ei~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~------------------------~l~~ 144 (305)
T TIGR00635 89 EIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG------------------------MLTS 144 (305)
T ss_pred hHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcc------------------------ccCH
Confidence 99999999999999999876522 1111 122334567777776642 3467
Q ss_pred hHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
++.+||...+.+.|++.+++.+++...+... .+.++++++++++..+. ..+|.+.+.++
T Consensus 145 ~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~---------~~~~~~~al~~ia~~~~---G~pR~~~~ll~ 203 (305)
T TIGR00635 145 PLRDRFGIILRLEFYTVEELAEIVSRSAGLL---------NVEIEPEAALEIARRSR---GTPRIANRLLR 203 (305)
T ss_pred HHHhhcceEEEeCCCCHHHHHHHHHHHHHHh---------CCCcCHHHHHHHHHHhC---CCcchHHHHHH
Confidence 8999998889999999999999997665421 45789999999998743 22344444444
No 61
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.68 E-value=1.2e-15 Score=136.90 Aligned_cols=175 Identities=28% Similarity=0.347 Sum_probs=118.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||++|+++|+.+ +.+++.+++++.... ..|.. ......+++.......++|||||+
T Consensus 167 gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~l~~~-----~~g~~-----~~~i~~~f~~a~~~~p~IlfiDEi 233 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVQK-----FIGEG-----ARLVRELFELAREKAPSIIFIDEI 233 (389)
T ss_pred ceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHHHhHh-----hccch-----HHHHHHHHHHHHhcCCeEEEEech
Confidence 59999999999999999999998 567888877665421 11110 011134555555566689999999
Q ss_pred ccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+ +..++..+.+++..-.... ...++.||+|||... .+
T Consensus 234 D~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~------~~~~v~VI~aTn~~~------------------------~l 283 (389)
T PRK03992 234 DAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD------PRGNVKIIAATNRID------------------------IL 283 (389)
T ss_pred hhhhcccccCCCCccHHHHHHHHHHHHhccccC------CCCCEEEEEecCChh------------------------hC
Confidence 976 4566677777775321111 113567899998752 34
Q ss_pred ChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 168 RPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 168 ~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
++++++ ||+..|.|++|+.++..+|++.++... ..... ..+..++.. ..+++..+++..+..+...
T Consensus 284 d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~-------~~~~~---~~~~~la~~--t~g~sgadl~~l~~eA~~~ 351 (389)
T PRK03992 284 DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM-------NLADD---VDLEELAEL--TEGASGADLKAICTEAGMF 351 (389)
T ss_pred CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC-------CCCCc---CCHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 677775 999999999999999999997665321 11111 224555554 3466778999998887775
Q ss_pred HHH
Q 047225 246 NLA 248 (287)
Q Consensus 246 ~~~ 248 (287)
++.
T Consensus 352 a~~ 354 (389)
T PRK03992 352 AIR 354 (389)
T ss_pred HHH
Confidence 543
No 62
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.1e-15 Score=137.77 Aligned_cols=178 Identities=24% Similarity=0.335 Sum_probs=129.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~iD 96 (287)
.++||||||||||.+|+++|++. +..|+.+...+.... |+|-. ..+.++...+....+|||||
T Consensus 547 GvLL~GPPGCGKTLlAKAVANEa---g~NFisVKGPELlNk------------YVGESErAVR~vFqRAR~saPCVIFFD 611 (802)
T KOG0733|consen 547 GVLLCGPPGCGKTLLAKAVANEA---GANFISVKGPELLNK------------YVGESERAVRQVFQRARASAPCVIFFD 611 (802)
T ss_pred ceEEeCCCCccHHHHHHHHhhhc---cCceEeecCHHHHHH------------HhhhHHHHHHHHHHHhhcCCCeEEEec
Confidence 49999999999999999999998 677777766554322 12211 12467777777778999999
Q ss_pred CcccccH-----------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHh
Q 047225 97 EIEKAHR-----------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRR 165 (287)
Q Consensus 97 eid~~~~-----------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (287)
|+|-+-+ .+++.|+.-|+...-. .++.||.+||.+.
T Consensus 612 EiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R---------~gV~viaATNRPD------------------------ 658 (802)
T KOG0733|consen 612 EIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER---------RGVYVIAATNRPD------------------------ 658 (802)
T ss_pred chhhcCcccCCCCchhHHHHHHHHHHHhcccccc---------cceEEEeecCCCc------------------------
Confidence 9996533 5777777777642111 2568999999874
Q ss_pred cCChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhH-HHHHHHhccCCCCCchhHHHHHHHH
Q 047225 166 RFRPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTF-KKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 166 ~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
.++|+++ .|||...++++|+.++...|++..... ....+++++ ++.|+......+++.-+|...+..+
T Consensus 659 iIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn---------~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreA 729 (802)
T KOG0733|consen 659 IIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN---------TKPPLSSDVDLDEIARNTKCEGFTGADLAALVREA 729 (802)
T ss_pred ccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc---------CCCCCCcccCHHHHhhcccccCCchhhHHHHHHHH
Confidence 3467777 899999999999999999999776542 122333333 4566665555577778999999999
Q ss_pred HHHHHHHHHHh
Q 047225 243 LEDNLAEIILT 253 (287)
Q Consensus 243 ~~~~~~~~~~~ 253 (287)
-..+|.+.++.
T Consensus 730 si~AL~~~~~~ 740 (802)
T KOG0733|consen 730 SILALRESLFE 740 (802)
T ss_pred HHHHHHHHHhh
Confidence 88888877764
No 63
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.68 E-value=9.4e-16 Score=128.17 Aligned_cols=160 Identities=13% Similarity=0.188 Sum_probs=113.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
.+++|+||+|||||++++++++.....+..++++++...... .... ....+++|||
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~----------------------~~~~--~~~~~liiDd 98 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLA----------------------FDFD--PEAELYAVDD 98 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHH----------------------Hhhc--ccCCEEEEeC
Confidence 369999999999999999999988666778888888654321 0111 1235999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC-
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID- 176 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~- 176 (287)
++.++...+..|+.+++.... . ...+++++++..+.. ..+.++|.+|+.
T Consensus 99 i~~l~~~~~~~L~~~~~~~~~---~------~~~~vl~~~~~~~~~---------------------~~l~~~L~sr~~~ 148 (227)
T PRK08903 99 VERLDDAQQIALFNLFNRVRA---H------GQGALLVAGPAAPLA---------------------LPLREDLRTRLGW 148 (227)
T ss_pred hhhcCchHHHHHHHHHHHHHH---c------CCcEEEEeCCCCHHh---------------------CCCCHHHHHHHhc
Confidence 999998888889888864211 0 122466666543211 134578888983
Q ss_pred -ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 177 -EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 177 -~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
..+.++||+.++...++.....+ . .+.++++++++++. .|.. +.+.++..++.+-
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~-------~--~v~l~~~al~~L~~-~~~g--n~~~l~~~l~~l~ 204 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAE-------R--GLQLADEVPDYLLT-HFRR--DMPSLMALLDALD 204 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHH-hccC--CHHHHHHHHHHHH
Confidence 67999999988877776544322 1 47899999999999 5755 5588888888643
No 64
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.68 E-value=4.7e-16 Score=128.80 Aligned_cols=187 Identities=18% Similarity=0.269 Sum_probs=122.0
Q ss_pred hhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhc--CCCCceEEecccccccccchhhhhCCCCCCCcccchhhHH
Q 047225 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYF--GSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLT 82 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
.++....+++...++++|+||+|+|||+|.+++++.+. .++..++++++.++...... .+.. .....+.
T Consensus 22 ~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~--~~~~-------~~~~~~~ 92 (219)
T PF00308_consen 22 AAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFAD--ALRD-------GEIEEFK 92 (219)
T ss_dssp HHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHH--HHHT-------TSHHHHH
T ss_pred HHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHH--HHHc-------ccchhhh
Confidence 34444455665555799999999999999999999873 24667888888776643110 0000 1123455
Q ss_pred HHHHhCCcEEEEEcCcccccH--HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHH
Q 047225 83 EAVRHRPHSVILFDEIEKAHR--DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVA 160 (287)
Q Consensus 83 ~~~~~~~~~il~iDeid~~~~--~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
+.+...+ +|+|||++.+.. .++..|+.+++.... .+..+|+|++..+..+.
T Consensus 93 ~~~~~~D--lL~iDDi~~l~~~~~~q~~lf~l~n~~~~----------~~k~li~ts~~~P~~l~--------------- 145 (219)
T PF00308_consen 93 DRLRSAD--LLIIDDIQFLAGKQRTQEELFHLFNRLIE----------SGKQLILTSDRPPSELS--------------- 145 (219)
T ss_dssp HHHCTSS--EEEEETGGGGTTHHHHHHHHHHHHHHHHH----------TTSEEEEEESS-TTTTT---------------
T ss_pred hhhhcCC--EEEEecchhhcCchHHHHHHHHHHHHHHh----------hCCeEEEEeCCCCcccc---------------
Confidence 5666555 999999998754 458888888775221 12357788876655441
Q ss_pred HHHHhcCChhHHhccCc--eEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHH
Q 047225 161 EELRRRFRPEFLNRIDE--VIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRA 238 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~~--~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~ 238 (287)
.+.+.|.+|+.. .+.+.||+.++..++++...... .+.++++++++|++.. . .++|.+..+
T Consensus 146 -----~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~---------~~~l~~~v~~~l~~~~-~--~~~r~L~~~ 208 (219)
T PF00308_consen 146 -----GLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKER---------GIELPEEVIEYLARRF-R--RDVRELEGA 208 (219)
T ss_dssp -----TS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHT---------T--S-HHHHHHHHHHT-T--SSHHHHHHH
T ss_pred -----ccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHh---------CCCCcHHHHHHHHHhh-c--CCHHHHHHH
Confidence 357889999954 69999999999999997766532 4679999999999873 2 356888888
Q ss_pred HHHHHH
Q 047225 239 IGRLLE 244 (287)
Q Consensus 239 i~~~~~ 244 (287)
++++..
T Consensus 209 l~~l~~ 214 (219)
T PF00308_consen 209 LNRLDA 214 (219)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 65
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.3e-15 Score=142.58 Aligned_cols=176 Identities=18% Similarity=0.221 Sum_probs=113.7
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC----CceEEe-cccccccccchhhhhC-CCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK----EAMVRI-DMSEYMEKHTVSKFFG-SPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~ 77 (287)
+.++..+... +..+.++|+||+|||||++++.+++.+.-.. .++..+ +|..+.... ..+++. ......+.++
T Consensus 26 ~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~-h~DviEIDAas~rgVDd 103 (830)
T PRK07003 26 RALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGR-FVDYVEMDAASNRGVDE 103 (830)
T ss_pred HHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCC-CceEEEecccccccHHH
Confidence 3444444443 2223479999999999999999999984221 111110 111111100 000110 0011122222
Q ss_pred hhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+.. +++.|+||||+|.++...++.|++.||+. ..++.||++||...
T Consensus 104 IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEP-----------P~~v~FILaTtd~~------------ 160 (830)
T PRK07003 104 MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEP-----------PPHVKFILATTDPQ------------ 160 (830)
T ss_pred HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhc-----------CCCeEEEEEECChh------------
Confidence 2333333322 45689999999999999999999999973 13567888887643
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhcc
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGY 226 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 226 (287)
.+.+.++||| ..+.|.+++.+++.++++..+... .+.++++++..|+..+-
T Consensus 161 ------------KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~E---------gI~id~eAL~lIA~~A~ 211 (830)
T PRK07003 161 ------------KIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEE---------RIAFEPQALRLLARAAQ 211 (830)
T ss_pred ------------hccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC
Confidence 3467899999 999999999999999998777542 46789999999998753
No 66
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.68 E-value=6.9e-16 Score=128.81 Aligned_cols=163 Identities=12% Similarity=0.202 Sum_probs=114.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||+|||||++++.+++.....+.++++++|....... ..+.+.+.. .++|+|||+
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~------------------~~~~~~~~~--~~lLvIDdi 99 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD------------------PEVLEGLEQ--ADLVCLDDV 99 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH------------------HHHHhhccc--CCEEEEeCh
Confidence 799999999999999999999886566788889887765321 112222222 249999999
Q ss_pred ccccH--HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC
Q 047225 99 EKAHR--DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID 176 (287)
Q Consensus 99 d~~~~--~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 176 (287)
+.++. ..+..|..+++.... .+..+|++++...... ....+.|.+|+.
T Consensus 100 ~~l~~~~~~~~~L~~~l~~~~~----------~~~~iIits~~~~~~~--------------------~~~~~~L~~r~~ 149 (226)
T TIGR03420 100 EAIAGQPEWQEALFHLYNRVRE----------AGGRLLIAGRAAPAQL--------------------PLRLPDLRTRLA 149 (226)
T ss_pred hhhcCChHHHHHHHHHHHHHHH----------cCCeEEEECCCChHHC--------------------CcccHHHHHHHh
Confidence 99876 447888887764210 1124777777543221 011267788874
Q ss_pred --ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 177 --EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 177 --~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
..+.++||+.++...++...+.+ . .+.+++++++.|+.. |.. +.|+++++++++-
T Consensus 150 ~~~~i~l~~l~~~e~~~~l~~~~~~-------~--~~~~~~~~l~~L~~~-~~g--n~r~L~~~l~~~~ 206 (226)
T TIGR03420 150 WGLVFQLPPLSDEEKIAALQSRAAR-------R--GLQLPDEVADYLLRH-GSR--DMGSLMALLDALD 206 (226)
T ss_pred cCeeEecCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHh-ccC--CHHHHHHHHHHHH
Confidence 57999999999999888654432 1 467999999999994 644 5689999998644
No 67
>PRK06893 DNA replication initiation factor; Validated
Probab=99.67 E-value=1.4e-15 Score=127.07 Aligned_cols=163 Identities=13% Similarity=0.228 Sum_probs=110.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||++++++++.+...+....++++...... ...+.+.+.. ..+|+|||+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~------------------~~~~~~~~~~--~dlLilDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF------------------SPAVLENLEQ--QDLVCLDDL 100 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh------------------hHHHHhhccc--CCEEEEeCh
Confidence 58999999999999999999987554555566665422110 0122223333 359999999
Q ss_pred cccc--HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC
Q 047225 99 EKAH--RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID 176 (287)
Q Consensus 99 d~~~--~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 176 (287)
+... ..++..|+.+++..... ...++|+|+|..+..+. ...++|.+|+.
T Consensus 101 ~~~~~~~~~~~~l~~l~n~~~~~---------~~~illits~~~p~~l~--------------------~~~~~L~sRl~ 151 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNRIKEQ---------GKTLLLISADCSPHALS--------------------IKLPDLASRLT 151 (229)
T ss_pred hhhcCChHHHHHHHHHHHHHHHc---------CCcEEEEeCCCChHHcc--------------------ccchhHHHHHh
Confidence 9863 45666777777642110 12346777776654431 12378889884
Q ss_pred --ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 177 --EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 177 --~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
..+.+++|+.++..+++++.+... .+.++++++++|+.... .++|.+..+++++
T Consensus 152 ~g~~~~l~~pd~e~~~~iL~~~a~~~---------~l~l~~~v~~~L~~~~~---~d~r~l~~~l~~l 207 (229)
T PRK06893 152 WGEIYQLNDLTDEQKIIVLQRNAYQR---------GIELSDEVANFLLKRLD---RDMHTLFDALDLL 207 (229)
T ss_pred cCCeeeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhcc---CCHHHHHHHHHHH
Confidence 478999999999999997765421 47899999999998743 3456777777754
No 68
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.67 E-value=1.3e-15 Score=139.55 Aligned_cols=203 Identities=18% Similarity=0.223 Sum_probs=150.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCC-cccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYV-GFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++++|++||||+++++.++........+++.++|...........+||...+.. |... .-...+.....++|||||
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADK--RREGRFVEADGGTLFLDE 241 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCc--CCCCceeECCCCEEEEec
Confidence 6899999999999999999998877778999999998766544556777654432 1111 111223344568999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC-
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID- 176 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~- 176 (287)
++.+++..|..|+++++++.+....+......++.+|++++...... .....|.++|..|+.
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~-----------------~~~~~~~~~l~~~l~~ 304 (441)
T PRK10365 242 IGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAE-----------------VNAGRFRQDLYYRLNV 304 (441)
T ss_pred cccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHH-----------------HHcCCchHHHHHHhcc
Confidence 99999999999999999987654333222234678888887653221 123468889999985
Q ss_pred ceEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 177 EVIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 177 ~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
..+.+||+. .+|+..++..++.++....... ...++++++..|..+.|+. ++|++++.+++++.
T Consensus 305 ~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpg--N~reL~~~~~~~~~ 370 (441)
T PRK10365 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA--VKGFTPQAMDLLIHYDWPG--NIRELENAVERAVV 370 (441)
T ss_pred ceecCCChhhcchhHHHHHHHHHHHHHHHhCCC--CCCcCHHHHHHHHhCCCCC--HHHHHHHHHHHHHH
Confidence 448899999 5689999999998876654321 2469999999999999966 56999999998775
No 69
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.6e-15 Score=142.92 Aligned_cols=187 Identities=17% Similarity=0.209 Sum_probs=116.2
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC----CceEEe-cccccccccchhhhh-CCCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK----EAMVRI-DMSEYMEKHTVSKFF-GSPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~ 77 (287)
+.+++.+... +..+.++|+||+|||||++++++++.+.... .++..+ .|....+... ..++ -......+...
T Consensus 26 ~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~-~DviEidAas~~kVDd 103 (944)
T PRK14949 26 HALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF-VDLIEVDAASRTKVDD 103 (944)
T ss_pred HHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC-ceEEEeccccccCHHH
Confidence 3344444432 3333369999999999999999999984321 111111 0111111000 0000 00111122222
Q ss_pred hhhHHHHHH----hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVR----HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~----~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+. .+++.|+||||+++++.+.++.|++.|++.. .+++||++|+...
T Consensus 104 IReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP-----------~~vrFILaTTe~~------------ 160 (944)
T PRK14949 104 TRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPP-----------EHVKFLLATTDPQ------------ 160 (944)
T ss_pred HHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccC-----------CCeEEEEECCCch------------
Confidence 233333332 2456899999999999999999999999731 2456777665432
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCch
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r 233 (287)
.+.+.+++|| ..+.|.|++.+++.+.+.+.+... .+.+++++++.|+..+. +++|
T Consensus 161 ------------kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~E---------gI~~edeAL~lIA~~S~---Gd~R 215 (944)
T PRK14949 161 ------------KLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQE---------QLPFEAEALTLLAKAAN---GSMR 215 (944)
T ss_pred ------------hchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHH
Confidence 2457899999 999999999999999997777542 46789999999998753 3344
Q ss_pred hHHHHHH
Q 047225 234 PLRRAIG 240 (287)
Q Consensus 234 ~l~~~i~ 240 (287)
..-..++
T Consensus 216 ~ALnLLd 222 (944)
T PRK14949 216 DALSLTD 222 (944)
T ss_pred HHHHHHH
Confidence 4444443
No 70
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.66 E-value=4.1e-15 Score=133.04 Aligned_cols=175 Identities=25% Similarity=0.372 Sum_probs=114.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||++++++|+.+ +.+++.+.++.+... ..|.. ......++..+.....+||||||+
T Consensus 181 gvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l~~k-----~~ge~-----~~~lr~lf~~A~~~~P~ILfIDEI 247 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEFVQK-----YLGEG-----PRMVRDVFRLARENAPSIIFIDEV 247 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHHHH-----hcchh-----HHHHHHHHHHHHhcCCeEEEEECH
Confidence 59999999999999999999988 566777766543321 11110 011234556666666789999999
Q ss_pred ccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+ +...+..+.+++..-.-.. ...++.+|++||... .+
T Consensus 248 D~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~------~~~~v~VI~aTN~~d------------------------~L 297 (398)
T PTZ00454 248 DSIATKRFDAQTGADREVQRILLELLNQMDGFD------QTTNVKVIMATNRAD------------------------TL 297 (398)
T ss_pred hhhccccccccCCccHHHHHHHHHHHHHhhccC------CCCCEEEEEecCCch------------------------hC
Confidence 965 2345555666554311010 012567899998753 35
Q ss_pred ChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 168 RPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 168 ~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
++++++ ||+..|.|++|+.++..+|++.++.+. +...++ -++.++.. ..+++..+++..+..+...
T Consensus 298 DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~-------~l~~dv---d~~~la~~--t~g~sgaDI~~l~~eA~~~ 365 (398)
T PTZ00454 298 DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM-------NLSEEV---DLEDFVSR--PEKISAADIAAICQEAGMQ 365 (398)
T ss_pred CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC-------CCCccc---CHHHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 678876 999999999999999999997666432 211122 23445543 3466778999998888775
Q ss_pred HHH
Q 047225 246 NLA 248 (287)
Q Consensus 246 ~~~ 248 (287)
++.
T Consensus 366 A~r 368 (398)
T PTZ00454 366 AVR 368 (398)
T ss_pred HHH
Confidence 553
No 71
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.66 E-value=1.8e-15 Score=129.08 Aligned_cols=198 Identities=19% Similarity=0.256 Sum_probs=124.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHH-hCCcEEEEEc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVR-HRPHSVILFD 96 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~il~iD 96 (287)
+.++||||||||||++|+.|+......+..|+.+....-.. ..+.+.|. .-..... -+...|+|||
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t-~dvR~ife------------~aq~~~~l~krkTilFiD 229 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT-NDVRDIFE------------QAQNEKSLTKRKTILFID 229 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccch-HHHHHHHH------------HHHHHHhhhcceeEEEeH
Confidence 36999999999999999999998755444444443322111 11222221 1111111 1345799999
Q ss_pred CcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC
Q 047225 97 EIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID 176 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 176 (287)
|++++....|+.+++.++.|.+ .+|.++...+. -.+..+|++||
T Consensus 230 EiHRFNksQQD~fLP~VE~G~I-------------~lIGATTENPS----------------------Fqln~aLlSRC- 273 (554)
T KOG2028|consen 230 EIHRFNKSQQDTFLPHVENGDI-------------TLIGATTENPS----------------------FQLNAALLSRC- 273 (554)
T ss_pred HhhhhhhhhhhcccceeccCce-------------EEEecccCCCc----------------------cchhHHHHhcc-
Confidence 9999999999999999998743 45555433221 13467999999
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHHH--HHHh-c-CcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHH
Q 047225 177 EVIVFRQLNKMQLMEIVDIMLKEIYE--RLEA-K-NMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNLAEIIL 252 (287)
Q Consensus 177 ~~i~~~~~~~~~~~~il~~~l~~~~~--~~~~-~-~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~~~~~~ 252 (287)
.++.+.++..+++..|+.+-+.-+.. +... . +.-..+++.++++++..+- .+.|.+++.+-+. +.....
T Consensus 274 ~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsd------GDaR~aLN~Lems-~~m~~t 346 (554)
T KOG2028|consen 274 RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSD------GDARAALNALEMS-LSMFCT 346 (554)
T ss_pred ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcC------chHHHHHHHHHHH-HHHHHh
Confidence 99999999999999999775542221 1111 1 1113589999999988754 5777777743332 322322
Q ss_pred hccCCCCCEEEEEEcCCccEE
Q 047225 253 TGYIQVGDSVTMDCDSGGNVI 273 (287)
Q Consensus 253 ~~~~~~~~~~~i~~~~~~~~~ 273 (287)
.. .......+.++|.+..+
T Consensus 347 r~--g~~~~~~lSidDvke~l 365 (554)
T KOG2028|consen 347 RS--GQSSRVLLSIDDVKEGL 365 (554)
T ss_pred hc--CCcccceecHHHHHHHH
Confidence 22 11245566666655543
No 72
>PHA02244 ATPase-like protein
Probab=99.66 E-value=8.2e-15 Score=127.53 Aligned_cols=145 Identities=16% Similarity=0.187 Sum_probs=101.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++|++++..+ +.+++.++.. .+. ..+.|.... .+....+.+..++..+ ++++|||+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~l--~d~---~~L~G~i~~-~g~~~dgpLl~A~~~G--gvLiLDEI 189 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNAI--MDE---FELKGFIDA-NGKFHETPFYEAFKKG--GLFFIDEI 189 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecC--hHH---Hhhcccccc-cccccchHHHHHhhcC--CEEEEeCc
Confidence 59999999999999999999997 6678777632 111 122221111 1222234666666555 49999999
Q ss_pred ccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCce
Q 047225 99 EKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEV 178 (287)
Q Consensus 99 d~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~ 178 (287)
+.++++++..|..+++++.+....+.....+++.+|+|+|+...+.... | .-.+.+++++++|| ..
T Consensus 190 d~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~----y---------~G~k~L~~AllDRF-v~ 255 (383)
T PHA02244 190 DASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHI----Y---------VARNKIDGATLDRF-AP 255 (383)
T ss_pred CcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccc----c---------CCCcccCHHHHhhc-EE
Confidence 9999999999999999887776555544557999999999954321000 0 00235789999999 78
Q ss_pred EEeCCCCHHH
Q 047225 179 IVFRQLNKMQ 188 (287)
Q Consensus 179 i~~~~~~~~~ 188 (287)
+.|..|+..+
T Consensus 256 I~~dyp~~~E 265 (383)
T PHA02244 256 IEFDYDEKIE 265 (383)
T ss_pred eeCCCCcHHH
Confidence 9999988433
No 73
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.66 E-value=3.2e-15 Score=142.42 Aligned_cols=169 Identities=16% Similarity=0.281 Sum_probs=115.8
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh-CCcEEEEEc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH-RPHSVILFD 96 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~iD 96 (287)
++++|+||||||||++|+++++.. ...++.+++....- ..+...+ ......+.. +...++|||
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~~i-~dir~~i------------~~a~~~l~~~~~~~IL~ID 116 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLAGV-KDLRAEV------------DRAKERLERHGKRTILFID 116 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhhhh-HHHHHHH------------HHHHHHhhhcCCceEEEEe
Confidence 379999999999999999999987 45566666542110 0000000 011111111 345699999
Q ss_pred CcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC
Q 047225 97 EIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID 176 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 176 (287)
|+|.++...++.|++.++++. +++|.+++..+.. .+.+++++|+
T Consensus 117 EIh~Ln~~qQdaLL~~lE~g~-------------IiLI~aTTenp~~----------------------~l~~aL~SR~- 160 (725)
T PRK13341 117 EVHRFNKAQQDALLPWVENGT-------------ITLIGATTENPYF----------------------EVNKALVSRS- 160 (725)
T ss_pred ChhhCCHHHHHHHHHHhcCce-------------EEEEEecCCChHh----------------------hhhhHhhccc-
Confidence 999999999999999998642 2455555432210 2357889998
Q ss_pred ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 177 EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 177 ~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
..+.|+|++.+++..++...+......+.. ..+.++++++++|+..+ ..++|.+...++.++
T Consensus 161 ~v~~l~pLs~edi~~IL~~~l~~~~~~~g~--~~v~I~deaL~~La~~s---~GD~R~lln~Le~a~ 222 (725)
T PRK13341 161 RLFRLKSLSDEDLHQLLKRALQDKERGYGD--RKVDLEPEAEKHLVDVA---NGDARSLLNALELAV 222 (725)
T ss_pred cceecCCCCHHHHHHHHHHHHHHHHhhcCC--cccCCCHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence 789999999999999999888764443322 24789999999999875 356677777777554
No 74
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.66 E-value=1.7e-16 Score=117.43 Aligned_cols=123 Identities=30% Similarity=0.411 Sum_probs=74.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCC-----CCCcccchhhHHHHHHhCCcEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPP-----GYVGFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~il 93 (287)
|++|.|+||+|||++++++|+.+ +..+..+.+.... ...+++|... +...+. .++++ .+++
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpdl---lPsDi~G~~v~~~~~~~f~~~-~GPif-------~~il 66 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPDL---LPSDILGFPVYDQETGEFEFR-PGPIF-------TNIL 66 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT-----HHHHHEEEEEETTTTEEEEE-E-TT--------SSEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCCC---CcccceeeeeeccCCCeeEee-cChhh-------hcee
Confidence 68999999999999999999998 5667777664322 2344444321 100011 12222 1499
Q ss_pred EEcCcccccHHHHHHHHHhhcCceeecCCCceeeccc-eEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHH
Q 047225 94 LFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKN-TIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFL 172 (287)
Q Consensus 94 ~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~-~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (287)
++||++++++.+|++|+++|+++.+.. .|....+++ ++||+|.|+..... ...++.+++
T Consensus 67 l~DEiNrappktQsAlLeam~Er~Vt~-~g~~~~lp~pf~ViATqNp~e~~G-------------------ty~Lpea~~ 126 (131)
T PF07726_consen 67 LADEINRAPPKTQSALLEAMEERQVTI-DGQTYPLPDPFFVIATQNPVEQEG-------------------TYPLPEAQL 126 (131)
T ss_dssp EEETGGGS-HHHHHHHHHHHHHSEEEE-TTEEEE--SS-EEEEEE-TT--S-------------------------HHHH
T ss_pred eecccccCCHHHHHHHHHHHHcCeEEe-CCEEEECCCcEEEEEecCccccCc-------------------eecCCHHHh
Confidence 999999999999999999999999887 688888876 78888889853321 135678899
Q ss_pred hcc
Q 047225 173 NRI 175 (287)
Q Consensus 173 ~r~ 175 (287)
+||
T Consensus 127 DRF 129 (131)
T PF07726_consen 127 DRF 129 (131)
T ss_dssp TTS
T ss_pred ccc
Confidence 998
No 75
>PRK08727 hypothetical protein; Validated
Probab=99.66 E-value=4.3e-15 Score=124.41 Aligned_cols=164 Identities=18% Similarity=0.206 Sum_probs=111.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
++++|+||+|||||++++++++.+...+....++++.+.... .....+.+... .+|+|||
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~------------------~~~~~~~l~~~--dlLiIDD 101 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGR------------------LRDALEALEGR--SLVALDG 101 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhh------------------HHHHHHHHhcC--CEEEEeC
Confidence 369999999999999999999988665666667766442211 01233333333 4999999
Q ss_pred ccccc--HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhcc
Q 047225 98 IEKAH--RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRI 175 (287)
Q Consensus 98 id~~~--~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 175 (287)
++.+. +..+..++.+++.... ....+|+|+|..+..+. .+.++|.+|+
T Consensus 102 i~~l~~~~~~~~~lf~l~n~~~~----------~~~~vI~ts~~~p~~l~--------------------~~~~dL~SRl 151 (233)
T PRK08727 102 LESIAGQREDEVALFDFHNRARA----------AGITLLYTARQMPDGLA--------------------LVLPDLRSRL 151 (233)
T ss_pred cccccCChHHHHHHHHHHHHHHH----------cCCeEEEECCCChhhhh--------------------hhhHHHHHHH
Confidence 99874 4566777777765311 12248888887655431 2358899996
Q ss_pred --CceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 176 --DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 176 --~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
...+.++||+.+++.++++...... .+.++++++++|+.... .++|.+...++.+.
T Consensus 152 ~~~~~~~l~~~~~e~~~~iL~~~a~~~---------~l~l~~e~~~~La~~~~---rd~r~~l~~L~~l~ 209 (233)
T PRK08727 152 AQCIRIGLPVLDDVARAAVLRERAQRR---------GLALDEAAIDWLLTHGE---RELAGLVALLDRLD 209 (233)
T ss_pred hcCceEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhCC---CCHHHHHHHHHHHH
Confidence 3679999999999999997654431 46899999999999753 23344444455433
No 76
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3e-15 Score=128.57 Aligned_cols=183 Identities=22% Similarity=0.259 Sum_probs=125.9
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccccc--chhhhhCCCCCCCcccchhhHHHHHHhCCcE
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKH--TVSKFFGSPPGYVGFENGGQLTEAVRHRPHS 91 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (287)
.+|+..++++||||||||.||+++|.+. +..|+.+..+...... ....+ .+.++++.+.+..+
T Consensus 242 rrPWkgvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSsstltSKwRGeSEKl------------vRlLFemARfyAPS 306 (491)
T KOG0738|consen 242 RRPWKGVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSSSTLTSKWRGESEKL------------VRLLFEMARFYAPS 306 (491)
T ss_pred ccccceeeeeCCCCCcHHHHHHHHHHhh---cCeEEEechhhhhhhhccchHHH------------HHHHHHHHHHhCCc
Confidence 4556679999999999999999999999 5666666665544321 11111 24678888888889
Q ss_pred EEEEcCcccc------------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHH
Q 047225 92 VILFDEIEKA------------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGV 159 (287)
Q Consensus 92 il~iDeid~~------------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~ 159 (287)
+|||||||-+ +..+-+.|+-.|+.-..... + ...++|.++||.+=+
T Consensus 307 tIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e-~----~k~VmVLAATN~PWd----------------- 364 (491)
T KOG0738|consen 307 TIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE-N----SKVVMVLAATNFPWD----------------- 364 (491)
T ss_pred eeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc-c----ceeEEEEeccCCCcc-----------------
Confidence 9999999943 44566777777763211111 1 012466778887643
Q ss_pred HHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHH
Q 047225 160 AEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 160 ~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
++.+|++||-..|.+|-|+.+....+++..|... ..-++--++.|+... .+++..+++.+|
T Consensus 365 -------iDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~----------~~~~~~~~~~lae~~--eGySGaDI~nvC 425 (491)
T KOG0738|consen 365 -------IDEALRRRLEKRIYIPLPDAEARSALIKILLRSV----------ELDDPVNLEDLAERS--EGYSGADITNVC 425 (491)
T ss_pred -------hHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc----------cCCCCccHHHHHHHh--cCCChHHHHHHH
Confidence 3579999997779999999999999997777532 112233344555542 345668999999
Q ss_pred HHHHHHHHHHHHH
Q 047225 240 GRLLEDNLAEIIL 252 (287)
Q Consensus 240 ~~~~~~~~~~~~~ 252 (287)
..+-+.++.+.+.
T Consensus 426 reAsm~~mRR~i~ 438 (491)
T KOG0738|consen 426 REASMMAMRRKIA 438 (491)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988876644
No 77
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.7e-15 Score=130.88 Aligned_cols=180 Identities=16% Similarity=0.280 Sum_probs=124.0
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcE-E
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHS-V 92 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i 92 (287)
+.|..|++|+||||||||..|+.||... +..+..++.++... .|..+.+..+.++++.+....+ +
T Consensus 381 ~apfRNilfyGPPGTGKTm~ArelAr~S---GlDYA~mTGGDVAP-----------lG~qaVTkiH~lFDWakkS~rGLl 446 (630)
T KOG0742|consen 381 QAPFRNILFYGPPGTGKTMFARELARHS---GLDYAIMTGGDVAP-----------LGAQAVTKIHKLFDWAKKSRRGLL 446 (630)
T ss_pred cchhhheeeeCCCCCCchHHHHHHHhhc---CCceehhcCCCccc-----------cchHHHHHHHHHHHHHhhcccceE
Confidence 4566689999999999999999999988 45555555444331 2233444567899988886655 8
Q ss_pred EEEcCcc---------cccHHHHHHHHHhh-cCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 93 ILFDEIE---------KAHRDVLNVMLQLL-DDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 93 l~iDeid---------~~~~~~~~~L~~~l-~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
|||||.| .++.+...+|.-++ .+|.-. .++++++++|.+.
T Consensus 447 lFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqS---------rdivLvlAtNrpg--------------------- 496 (630)
T KOG0742|consen 447 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQS---------RDIVLVLATNRPG--------------------- 496 (630)
T ss_pred EEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccc---------cceEEEeccCCcc---------------------
Confidence 9999999 34555555565543 333222 2678899999874
Q ss_pred HHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcC-------------cEEEeChhHHHHHHHhc--cC
Q 047225 163 LRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKN-------------MELTVTHTFKKKLIEEG--YN 227 (287)
Q Consensus 163 ~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~-------------~~~~i~~~~~~~l~~~~--~~ 227 (287)
.|+.+.-+|||..+.||-|..++..+++..+++++...-...+ -.+.+.....+..++.. -.
T Consensus 497 ---dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkT 573 (630)
T KOG0742|consen 497 ---DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKT 573 (630)
T ss_pred ---chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhc
Confidence 3567899999999999999999999999999988764332222 24555554444444321 23
Q ss_pred CCCCchhHHHHHH
Q 047225 228 PSYGARPLRRAIG 240 (287)
Q Consensus 228 ~~~~~r~l~~~i~ 240 (287)
.+++.|++.+.+-
T Consensus 574 eGfSGREiakLva 586 (630)
T KOG0742|consen 574 EGFSGREIAKLVA 586 (630)
T ss_pred cCCcHHHHHHHHH
Confidence 4667788877654
No 78
>PRK05642 DNA replication initiation factor; Validated
Probab=99.65 E-value=3.9e-15 Score=124.70 Aligned_cols=167 Identities=16% Similarity=0.294 Sum_probs=116.7
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEE
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILF 95 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 95 (287)
+.++++|+||+|+|||+|++++++.+...+..+++++..++... ...+.+.+...+ +|+|
T Consensus 44 ~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~~~d--~Lii 103 (234)
T PRK05642 44 TESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------------------GPELLDNLEQYE--LVCL 103 (234)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------------------hHHHHHhhhhCC--EEEE
Confidence 33579999999999999999999887555667777777654421 124455555554 9999
Q ss_pred cCccccc--HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHh
Q 047225 96 DEIEKAH--RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLN 173 (287)
Q Consensus 96 Deid~~~--~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (287)
||++... +..+..|+.+++.... .+..+|++++..+..+. .+.++|.+
T Consensus 104 DDi~~~~~~~~~~~~Lf~l~n~~~~----------~g~~ilits~~~p~~l~--------------------~~~~~L~S 153 (234)
T PRK05642 104 DDLDVIAGKADWEEALFHLFNRLRD----------SGRRLLLAASKSPRELP--------------------IKLPDLKS 153 (234)
T ss_pred echhhhcCChHHHHHHHHHHHHHHh----------cCCEEEEeCCCCHHHcC--------------------ccCccHHH
Confidence 9999663 4667778888864211 12357777776554331 23588999
Q ss_pred ccC--ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 174 RID--EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 174 r~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
|+. ..+.+.+|+.++...+++..... . .+.++++++++|+.... .++|.+...++++..
T Consensus 154 Rl~~gl~~~l~~~~~e~~~~il~~ka~~-------~--~~~l~~ev~~~L~~~~~---~d~r~l~~~l~~l~~ 214 (234)
T PRK05642 154 RLTLALVFQMRGLSDEDKLRALQLRASR-------R--GLHLTDEVGHFILTRGT---RSMSALFDLLERLDQ 214 (234)
T ss_pred HHhcCeeeecCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHhcC---CCHHHHHHHHHHHHH
Confidence 994 55788999999999999654322 1 36899999999998743 345777777776543
No 79
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.65 E-value=5.9e-15 Score=133.74 Aligned_cols=159 Identities=18% Similarity=0.283 Sum_probs=112.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHH----HhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAV----RHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~ 94 (287)
+++|+||||||||++|+.+++.. ...++.+++..... ..+ ..+.+.+ ..+...++|
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~~-~~i----------------r~ii~~~~~~~~~g~~~vL~ 97 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSGV-KDL----------------REVIEEARQRRSAGRRTILF 97 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccccH-HHH----------------HHHHHHHHHhhhcCCceEEE
Confidence 79999999999999999999987 45666666543211 011 1222221 223557999
Q ss_pred EcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhc
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNR 174 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 174 (287)
|||++++....++.|++.++++. +++|.+++..+. ..+.+++.+|
T Consensus 98 IDEi~~l~~~~q~~LL~~le~~~-------------iilI~att~n~~----------------------~~l~~aL~SR 142 (413)
T PRK13342 98 IDEIHRFNKAQQDALLPHVEDGT-------------ITLIGATTENPS----------------------FEVNPALLSR 142 (413)
T ss_pred EechhhhCHHHHHHHHHHhhcCc-------------EEEEEeCCCChh----------------------hhccHHHhcc
Confidence 99999999999999999998642 235554433211 1346899999
Q ss_pred cCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 175 IDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 175 ~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
| ..+.|+|++.+++..++...+.... .+. +.+++++++.++..+ +.++|.+.+.++.+
T Consensus 143 ~-~~~~~~~ls~e~i~~lL~~~l~~~~-----~~~-i~i~~~al~~l~~~s---~Gd~R~aln~Le~~ 200 (413)
T PRK13342 143 A-QVFELKPLSEEDIEQLLKRALEDKE-----RGL-VELDDEALDALARLA---NGDARRALNLLELA 200 (413)
T ss_pred c-eeeEeCCCCHHHHHHHHHHHHHHhh-----cCC-CCCCHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 9 8999999999999999988775431 121 378999999998864 34566666666655
No 80
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=4.2e-15 Score=134.08 Aligned_cols=181 Identities=23% Similarity=0.318 Sum_probs=125.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~iD 96 (287)
.++|+||||||||++|+++|.++ +.+++.++..+...- +.|-. ..+.+++.......+|+|||
T Consensus 225 GvLlHGPPGCGKT~lA~AiAgel---~vPf~~isApeivSG------------vSGESEkkiRelF~~A~~~aPcivFiD 289 (802)
T KOG0733|consen 225 GVLLHGPPGCGKTSLANAIAGEL---GVPFLSISAPEIVSG------------VSGESEKKIRELFDQAKSNAPCIVFID 289 (802)
T ss_pred ceeeeCCCCccHHHHHHHHhhhc---CCceEeecchhhhcc------------cCcccHHHHHHHHHHHhccCCeEEEee
Confidence 49999999999999999999999 788988887654421 11111 12456666666666999999
Q ss_pred Ccccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHh
Q 047225 97 EIEKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRR 165 (287)
Q Consensus 97 eid~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (287)
|||-. ...+...|++.|++-.....+|. .++||.+||.+..
T Consensus 290 eIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~-----~VlVIgATnRPDs----------------------- 341 (802)
T KOG0733|consen 290 EIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD-----PVLVIGATNRPDS----------------------- 341 (802)
T ss_pred cccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC-----CeEEEecCCCCcc-----------------------
Confidence 99954 44577888888886443332333 3589999998753
Q ss_pred cCChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 166 RFRPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 166 ~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
+.|+|. .||+..|.+.-|+.....+|++..++.+. ....++ ...|+.. .+++-.-+|...+..+-
T Consensus 342 -lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lr-------l~g~~d---~~qlA~l--TPGfVGADL~AL~~~Aa 408 (802)
T KOG0733|consen 342 -LDPALRRAGRFDREICLGVPSETAREEILRIICRGLR-------LSGDFD---FKQLAKL--TPGFVGADLMALCREAA 408 (802)
T ss_pred -cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCC-------CCCCcC---HHHHHhc--CCCccchhHHHHHHHHH
Confidence 356665 78999999999999999999987775431 111222 3455554 34444468888888888
Q ss_pred HHHHHHHHHhccC
Q 047225 244 EDNLAEIILTGYI 256 (287)
Q Consensus 244 ~~~~~~~~~~~~~ 256 (287)
.-++.+ +++...
T Consensus 409 ~vAikR-~ld~~~ 420 (802)
T KOG0733|consen 409 FVAIKR-ILDQSS 420 (802)
T ss_pred HHHHHH-Hhhccc
Confidence 777755 455433
No 81
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.2e-15 Score=137.07 Aligned_cols=187 Identities=16% Similarity=0.200 Sum_probs=115.8
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC----CceEEe-cccccccccchhhhhC-CCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK----EAMVRI-DMSEYMEKHTVSKFFG-SPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~ 77 (287)
+.++..+.+. +..+.++|+||+|+|||++|+++|+.+.-.. .++-.+ +|...... ...+++. ......+...
T Consensus 25 ~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g-~hpDviEIDAAs~~~Vdd 102 (702)
T PRK14960 25 RALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEG-RFIDLIEIDAASRTKVED 102 (702)
T ss_pred HHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcC-CCCceEEecccccCCHHH
Confidence 3344444443 3334689999999999999999999983211 111000 01111100 0001100 0011122222
Q ss_pred hhhHHHHHH----hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVR----HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~----~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+. .+++.|++|||+|+++...+++|++.+++.. ..+.||++++...
T Consensus 103 IReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP-----------~~v~FILaTtd~~------------ 159 (702)
T PRK14960 103 TRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPP-----------EHVKFLFATTDPQ------------ 159 (702)
T ss_pred HHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCC-----------CCcEEEEEECChH------------
Confidence 223333221 2456799999999999999999999999731 2446777776432
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCch
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r 233 (287)
.+.+.+++|| ..+.|.+++.+++.+.+...+.+. .+.++++++..|+..+- .++|
T Consensus 160 ------------kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kE---------gI~id~eAL~~IA~~S~---GdLR 214 (702)
T PRK14960 160 ------------KLPITVISRC-LQFTLRPLAVDEITKHLGAILEKE---------QIAADQDAIWQIAESAQ---GSLR 214 (702)
T ss_pred ------------hhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHH
Confidence 2346888999 999999999999999998877642 46899999999998753 3344
Q ss_pred hHHHHHH
Q 047225 234 PLRRAIG 240 (287)
Q Consensus 234 ~l~~~i~ 240 (287)
.+.+.++
T Consensus 215 dALnLLD 221 (702)
T PRK14960 215 DALSLTD 221 (702)
T ss_pred HHHHHHH
Confidence 4444444
No 82
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=3.7e-15 Score=137.73 Aligned_cols=187 Identities=17% Similarity=0.210 Sum_probs=117.3
Q ss_pred hhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC---c-eEEecccccccc-----cchhhhhC-CCCCCCc
Q 047225 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE---A-MVRIDMSEYMEK-----HTVSKFFG-SPPGYVG 74 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~---~-~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~ 74 (287)
.++..+....-+ +.++|+||+|+|||++++.+++.+.-.+. . +..-.|...... ....+++. ......+
T Consensus 27 ~L~~al~~gRLp-HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~g 105 (700)
T PRK12323 27 ALTHALEQQRLH-HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRG 105 (700)
T ss_pred HHHHHHHhCCCc-eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCC
Confidence 344444443322 34799999999999999999999843110 0 000011111000 00001111 0111223
Q ss_pred ccchhhHHHHHH----hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccC
Q 047225 75 FENGGQLTEAVR----HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESIL 150 (287)
Q Consensus 75 ~~~~~~~~~~~~----~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~ 150 (287)
.++.+.+.+.+. .+++.|+||||+|.++...++.|++.||+. ..+++||++||...
T Consensus 106 VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP-----------P~~v~FILaTtep~--------- 165 (700)
T PRK12323 106 VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-----------PEHVKFILATTDPQ--------- 165 (700)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-----------CCCceEEEEeCChH---------
Confidence 333334444333 245689999999999999999999999973 13557888877543
Q ss_pred CchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCC
Q 047225 151 GSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSY 230 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 230 (287)
.+.+.++||| ..+.|.+++.+++.+.+...+... .+.+++++++.|+..+. .
T Consensus 166 ---------------kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~E---------gi~~d~eAL~~IA~~A~---G 217 (700)
T PRK12323 166 ---------------KIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEE---------GIAHEVNALRLLAQAAQ---G 217 (700)
T ss_pred ---------------hhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---C
Confidence 3457899999 999999999999999998777542 35688888988887643 3
Q ss_pred CchhHHHHHH
Q 047225 231 GARPLRRAIG 240 (287)
Q Consensus 231 ~~r~l~~~i~ 240 (287)
++|+..++++
T Consensus 218 s~RdALsLLd 227 (700)
T PRK12323 218 SMRDALSLTD 227 (700)
T ss_pred CHHHHHHHHH
Confidence 4455444444
No 83
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=4.4e-15 Score=136.87 Aligned_cols=189 Identities=17% Similarity=0.208 Sum_probs=119.3
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc-----cchhhhhC-CCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK-----HTVSKFFG-SPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~ 77 (287)
+.+++.+....-+ +.++|+||+|||||++|+.+|+.+.-.... ..-.|...... ....+++. ...+..+.+.
T Consensus 26 ~~L~~~~~~~~l~-ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~ 103 (509)
T PRK14958 26 RALSNALDQQYLH-HAYLFTGTRGVGKTTISRILAKCLNCEKGV-SANPCNDCENCREIDEGRFPDLFEVDAASRTKVED 103 (509)
T ss_pred HHHHHHHHhCCCC-eeEEEECCCCCCHHHHHHHHHHHhcCCCCC-CcccCCCCHHHHHHhcCCCceEEEEcccccCCHHH
Confidence 4455555443333 248999999999999999999998432110 00111110000 00000000 1111223333
Q ss_pred hhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+.. +++.|++|||+|.++...+++|++.+++. .+.+.||++|+...
T Consensus 104 iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-----------p~~~~fIlattd~~------------ 160 (509)
T PRK14958 104 TRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-----------PSHVKFILATTDHH------------ 160 (509)
T ss_pred HHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-----------CCCeEEEEEECChH------------
Confidence 3333333322 45689999999999999999999999973 23556777775432
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCch
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r 233 (287)
.+.+.+.+|+ ..+.|.+++.+++.+.+...+.+. ++.+++++++.++..+. .++|
T Consensus 161 ------------kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~e---------gi~~~~~al~~ia~~s~---GslR 215 (509)
T PRK14958 161 ------------KLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEE---------NVEFENAALDLLARAAN---GSVR 215 (509)
T ss_pred ------------hchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CcHH
Confidence 2356799999 999999999999999987777642 45789999999988753 3456
Q ss_pred hHHHHHHHH
Q 047225 234 PLRRAIGRL 242 (287)
Q Consensus 234 ~l~~~i~~~ 242 (287)
.+.+.++++
T Consensus 216 ~al~lLdq~ 224 (509)
T PRK14958 216 DALSLLDQS 224 (509)
T ss_pred HHHHHHHHH
Confidence 655555544
No 84
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=9e-15 Score=123.64 Aligned_cols=152 Identities=25% Similarity=0.398 Sum_probs=112.1
Q ss_pred EEEEEcCcccccH------------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHH
Q 047225 91 SVILFDEIEKAHR------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERG 158 (287)
Q Consensus 91 ~il~iDeid~~~~------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~ 158 (287)
+|+||||||+... ++|.-|+++++.-.+....| .++-.+..||+++...-.. +
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG-~VkTdHILFIasGAFh~sK------------P-- 316 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYG-PVKTDHILFIASGAFHVAK------------P-- 316 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccc-ccccceEEEEecCceecCC------------h--
Confidence 8999999997522 47788888888544443323 2334466777765431100 0
Q ss_pred HHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHH----HHHHHHHHHHHhcCcEEEeChhHHHHHHHhccC-----CC
Q 047225 159 VAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVD----IMLKEIYERLEAKNMELTVTHTFKKKLIEEGYN-----PS 229 (287)
Q Consensus 159 ~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~-----~~ 229 (287)
+-+-|+|..||+..+.+.+++.+++..|+. ..+.++...+...+..+.+++++++.|+..+|. .+
T Consensus 317 ------SDLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~EN 390 (444)
T COG1220 317 ------SDLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTEN 390 (444)
T ss_pred ------hhcChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccc
Confidence 123489999999999999999999999994 556777777788889999999999999988766 36
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEEEc
Q 047225 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267 (287)
Q Consensus 230 ~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (287)
.|+|.|-..+++++. +.-+...-..++++.|+.+
T Consensus 391 IGARRLhTvlErlLe----diSFeA~d~~g~~v~Id~~ 424 (444)
T COG1220 391 IGARRLHTVLERLLE----DISFEAPDMSGQKVTIDAE 424 (444)
T ss_pred hhHHHHHHHHHHHHH----HhCccCCcCCCCeEEEcHH
Confidence 788877777776666 6767777778888888754
No 85
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.5e-15 Score=134.91 Aligned_cols=174 Identities=16% Similarity=0.286 Sum_probs=107.9
Q ss_pred hhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC----ceEEec-cccccccc--chhhhhCCCCCCCcccc
Q 047225 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE----AMVRID-MSEYMEKH--TVSKFFGSPPGYVGFEN 77 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~----~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~ 77 (287)
.++..+.+..-| +.++|+||||||||++|+.+++.+..... ++..++ |....... .+..+ ......|...
T Consensus 25 ~L~~~i~~~~l~-~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el--~aa~~~gid~ 101 (472)
T PRK14962 25 LIINALKKNSIS-HAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL--DAASNRGIDE 101 (472)
T ss_pred HHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE--eCcccCCHHH
Confidence 344444444322 35899999999999999999999843211 111110 00000000 00000 0001112222
Q ss_pred hhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+.. +.+.+++|||+|.+....++.|++.+++.. +.+++|++++...
T Consensus 102 iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~-----------~~vv~Ilattn~~------------ 158 (472)
T PRK14962 102 IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPP-----------SHVVFVLATTNLE------------ 158 (472)
T ss_pred HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCC-----------CcEEEEEEeCChH------------
Confidence 2233333322 345799999999999999999999998621 2445666665321
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhcc
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGY 226 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 226 (287)
.+.+++.+|+ ..+.|.|++.+++..+++..+... .+.++++++++|+..+.
T Consensus 159 ------------kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~e---------gi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 159 ------------KVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAE---------GIEIDREALSFIAKRAS 209 (472)
T ss_pred ------------hhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHhC
Confidence 2357899999 899999999999999887666432 46799999999998653
No 86
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.63 E-value=3e-15 Score=135.51 Aligned_cols=188 Identities=16% Similarity=0.237 Sum_probs=124.6
Q ss_pred hhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCC--CCceEEecccccccccchhhhhCCCCCCCcccchhhHH
Q 047225 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGS--KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLT 82 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
.++..+..|+...++++|+||+|+|||+|++++++.+... +..++++++.++.... ...+.. .....+.
T Consensus 124 ~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~--~~~~~~-------~~~~~~~ 194 (405)
T TIGR00362 124 AALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDF--VNALRN-------NKMEEFK 194 (405)
T ss_pred HHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHH--HHHHHc-------CCHHHHH
Confidence 3444444555555579999999999999999999988433 4677788876654321 111110 0113444
Q ss_pred HHHHhCCcEEEEEcCcccccH--HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHH
Q 047225 83 EAVRHRPHSVILFDEIEKAHR--DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVA 160 (287)
Q Consensus 83 ~~~~~~~~~il~iDeid~~~~--~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
+.+... .+|+|||++.+.. ..+..|+.+++.... .+..+|+++|..+..+.
T Consensus 195 ~~~~~~--dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~----------~~~~iiits~~~p~~l~--------------- 247 (405)
T TIGR00362 195 EKYRSV--DLLLIDDIQFLAGKERTQEEFFHTFNALHE----------NGKQIVLTSDRPPKELP--------------- 247 (405)
T ss_pred HHHHhC--CEEEEehhhhhcCCHHHHHHHHHHHHHHHH----------CCCCEEEecCCCHHHHh---------------
Confidence 555543 4999999997643 456667666653210 12246777776544331
Q ss_pred HHHHhcCChhHHhccC--ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHH
Q 047225 161 EELRRRFRPEFLNRID--EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRA 238 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~ 238 (287)
.+.+.+.+||. ..+.++||+.+++..|++..+... .+.++++++++|+... ..++|.+..+
T Consensus 248 -----~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~---------~~~l~~e~l~~ia~~~---~~~~r~l~~~ 310 (405)
T TIGR00362 248 -----GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEE---------GLELPDEVLEFIAKNI---RSNVRELEGA 310 (405)
T ss_pred -----hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhc---CCCHHHHHHH
Confidence 23578889995 369999999999999997776541 4689999999999763 2356888888
Q ss_pred HHHHHHH
Q 047225 239 IGRLLED 245 (287)
Q Consensus 239 i~~~~~~ 245 (287)
++++...
T Consensus 311 l~~l~~~ 317 (405)
T TIGR00362 311 LNRLLAY 317 (405)
T ss_pred HHHHHHH
Confidence 8877543
No 87
>CHL00176 ftsH cell division protein; Validated
Probab=99.63 E-value=7.2e-15 Score=138.33 Aligned_cols=171 Identities=22% Similarity=0.316 Sum_probs=111.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++|+++|... +.+++.++++++... ..|. +......++..+.....+||||||+
T Consensus 218 gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~-----~~g~-----~~~~vr~lF~~A~~~~P~ILfIDEI 284 (638)
T CHL00176 218 GVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEM-----FVGV-----GAARVRDLFKKAKENSPCIVFIDEI 284 (638)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHH-----hhhh-----hHHHHHHHHHHHhcCCCcEEEEecc
Confidence 59999999999999999999988 678888888775432 1110 1111234555555566689999999
Q ss_pred cccc-----------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKAH-----------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~~-----------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+. ......|.+++..-.-.. .-.++++|++||... .+
T Consensus 285 D~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~------~~~~ViVIaaTN~~~------------------------~L 334 (638)
T CHL00176 285 DAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK------GNKGVIVIAATNRVD------------------------IL 334 (638)
T ss_pred hhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc------CCCCeeEEEecCchH------------------------hh
Confidence 9763 233444555543211000 012567888888742 23
Q ss_pred ChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 168 RPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 168 ~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
++++++ ||+..+.+++|+.++..+|++.++... ...++..+..++.. .++++.++++.+++++..
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~----------~~~~d~~l~~lA~~--t~G~sgaDL~~lvneAal 401 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNK----------KLSPDVSLELIARR--TPGFSGADLANLLNEAAI 401 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc----------ccchhHHHHHHHhc--CCCCCHHHHHHHHHHHHH
Confidence 466664 899999999999999999998877541 11233445555553 234566788877776544
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=9.4e-15 Score=136.75 Aligned_cols=187 Identities=16% Similarity=0.201 Sum_probs=116.5
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc-----cchhhhhC-CCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK-----HTVSKFFG-SPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~ 77 (287)
+.++..+....-+ +.++|+||+|+|||++|+.+++.+.-... .....|...... ....+++. ......+.+.
T Consensus 26 ~~L~~~l~~~rl~-hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~-~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~Vdd 103 (647)
T PRK07994 26 TALANALDLGRLH-HAYLFSGTRGVGKTTIARLLAKGLNCETG-ITATPCGECDNCREIEQGRFVDLIEIDAASRTKVED 103 (647)
T ss_pred HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHhhhhccC-CCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHH
Confidence 3445555543322 23799999999999999999999843211 000111111000 00000000 0011122222
Q ss_pred hhhHHHHHH----hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVR----HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~----~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+. .+++.|++|||+|+++...+++|++.+|+. .+++.||++|+...
T Consensus 104 iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-----------p~~v~FIL~Tt~~~------------ 160 (647)
T PRK07994 104 TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVKFLLATTDPQ------------ 160 (647)
T ss_pred HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-----------CCCeEEEEecCCcc------------
Confidence 333433332 245689999999999999999999999973 13456777766432
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCch
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r 233 (287)
.+.+.+++|| ..+.|.+++.+++.+.+...+... .+.++++++..|+..+. +++|
T Consensus 161 ------------kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e---------~i~~e~~aL~~Ia~~s~---Gs~R 215 (647)
T PRK07994 161 ------------KLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAE---------QIPFEPRALQLLARAAD---GSMR 215 (647)
T ss_pred ------------ccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHH
Confidence 3457899999 999999999999999998777542 35788999999987653 2344
Q ss_pred hHHHHHH
Q 047225 234 PLRRAIG 240 (287)
Q Consensus 234 ~l~~~i~ 240 (287)
.....++
T Consensus 216 ~Al~lld 222 (647)
T PRK07994 216 DALSLTD 222 (647)
T ss_pred HHHHHHH
Confidence 4444443
No 89
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.63 E-value=1.4e-14 Score=130.26 Aligned_cols=205 Identities=16% Similarity=0.208 Sum_probs=127.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHH----HHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLT----EAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~il~ 94 (287)
+++|.||||||||++|++++....... ++....+.-.. ..+++|...-+.... .+.+. +.+... .++|
T Consensus 41 hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ftt----p~DLfG~l~i~~~~~-~g~f~r~~~G~L~~A--~lLf 112 (498)
T PRK13531 41 SVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFST----PEEVFGPLSIQALKD-EGRYQRLTSGYLPEA--EIVF 112 (498)
T ss_pred CEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeecC----cHHhcCcHHHhhhhh-cCchhhhcCCccccc--cEEe
Confidence 799999999999999999999874332 34433332111 134554320000000 00111 111111 3999
Q ss_pred EcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhc
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNR 174 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 174 (287)
+||++++++..++.|+++|+++.++. .|...+.+..++++++|+-+. .+.+.+++++|
T Consensus 113 LDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~rfiv~ATN~LPE---------------------~g~~leAL~DR 170 (498)
T PRK13531 113 LDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPMRLLVTASNELPE---------------------ADSSLEALYDR 170 (498)
T ss_pred ecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCCcEEEEECCCCcc---------------------cCCchHHhHhh
Confidence 99999999999999999999999886 577788887777777786432 12456799999
Q ss_pred cCceEEeCCCC-HHHHHHHHHHHHH--------------HHHHHHHhcCcEEEeChhHHHHHHHhcc----C---CCCCc
Q 047225 175 IDEVIVFRQLN-KMQLMEIVDIMLK--------------EIYERLEAKNMELTVTHTFKKKLIEEGY----N---PSYGA 232 (287)
Q Consensus 175 ~~~~i~~~~~~-~~~~~~il~~~l~--------------~~~~~~~~~~~~~~i~~~~~~~l~~~~~----~---~~~~~ 232 (287)
|...+.+||++ .++..+++...-. +....+...-..+.+++.+.+++..... . ...+.
T Consensus 171 Fliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~Sp 250 (498)
T PRK13531 171 MLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSD 250 (498)
T ss_pred EEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCc
Confidence 96679999997 5666777753210 0011122211257899999999986532 1 12343
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCC
Q 047225 233 RPLRRAIGRLLEDNLAEIILTGYIQ 257 (287)
Q Consensus 233 r~l~~~i~~~~~~~~~~~~~~~~~~ 257 (287)
|. ++. ++.-+-+.+++.++..
T Consensus 251 R~---~~~-l~~~akA~A~l~GR~~ 271 (498)
T PRK13531 251 RR---WKK-AIRLLQASAFFSGRDA 271 (498)
T ss_pred HH---HHH-HHHHHHHHHHHCCCCC
Confidence 33 333 5555556667766543
No 90
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=1.2e-14 Score=132.23 Aligned_cols=190 Identities=14% Similarity=0.131 Sum_probs=119.1
Q ss_pred hhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcC----CCCceEEe-cccccccccchhhhhCCCCCCCcccchh
Q 047225 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFG----SKEAMVRI-DMSEYMEKHTVSKFFGSPPGYVGFENGG 79 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (287)
.++..+.. ++..++++|+||+|+||||+|+.+|+.+.- ...++-.+ +|..........-+.-...+..+.+..+
T Consensus 24 ~L~~a~~~-~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR 102 (491)
T PRK14964 24 ILRNAFTL-NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIK 102 (491)
T ss_pred HHHHHHHc-CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHH
Confidence 34443333 233346999999999999999999997621 11111110 0111110000000000111122333333
Q ss_pred hHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHH
Q 047225 80 QLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQM 155 (287)
Q Consensus 80 ~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~ 155 (287)
.+.+.+.. +.+.+++|||++.++...+++|++.+++. .+.+.||++++...
T Consensus 103 ~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-----------p~~v~fIlatte~~-------------- 157 (491)
T PRK14964 103 VILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP-----------APHVKFILATTEVK-------------- 157 (491)
T ss_pred HHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-----------CCCeEEEEEeCChH--------------
Confidence 34443332 34579999999999999999999999973 23456777775432
Q ss_pred HHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhH
Q 047225 156 ERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l 235 (287)
.+.+.+.+|+ ..+.|.+++.+++.+++...+.+. .+.+++++++.|+..+. .++|.+
T Consensus 158 ----------Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~E---------gi~i~~eAL~lIa~~s~---GslR~a 214 (491)
T PRK14964 158 ----------KIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKE---------NIEHDEESLKLIAENSS---GSMRNA 214 (491)
T ss_pred ----------HHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHHHH
Confidence 2346789999 999999999999999997777642 46799999999998753 455666
Q ss_pred HHHHHHHH
Q 047225 236 RRAIGRLL 243 (287)
Q Consensus 236 ~~~i~~~~ 243 (287)
.+.+++++
T Consensus 215 lslLdqli 222 (491)
T PRK14964 215 LFLLEQAA 222 (491)
T ss_pred HHHHHHHH
Confidence 66666544
No 91
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=1.2e-14 Score=134.17 Aligned_cols=178 Identities=23% Similarity=0.333 Sum_probs=120.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~iD 96 (287)
.++|+||||||||.+||++|.++ +..+..+...+... .|+|-. ..+.+++.+++...+|||||
T Consensus 707 GILLYGPPGTGKTLlAKAVATEc---sL~FlSVKGPELLN------------MYVGqSE~NVR~VFerAR~A~PCVIFFD 771 (953)
T KOG0736|consen 707 GILLYGPPGTGKTLLAKAVATEC---SLNFLSVKGPELLN------------MYVGQSEENVREVFERARSAAPCVIFFD 771 (953)
T ss_pred eeEEECCCCCchHHHHHHHHhhc---eeeEEeecCHHHHH------------HHhcchHHHHHHHHHHhhccCCeEEEec
Confidence 59999999999999999999998 66676666544331 122211 23578888888888999999
Q ss_pred CcccccH-------------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 97 EIEKAHR-------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 97 eid~~~~-------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
|+|-+.| .+...|+.-++. +.. + +..+++||.+||++.
T Consensus 772 ELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg--ls~--~---~s~~VFViGATNRPD---------------------- 822 (953)
T KOG0736|consen 772 ELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG--LSD--S---SSQDVFVIGATNRPD---------------------- 822 (953)
T ss_pred cccccCccCCCCCCccccHHHHHHHHHHHhhc--ccC--C---CCCceEEEecCCCcc----------------------
Confidence 9996654 244444444432 111 1 223678899999874
Q ss_pred HhcCChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhH-HHHHHHhccCCCCCchhHHHHHH
Q 047225 164 RRRFRPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTF-KKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 164 ~~~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
.++|+|+ .|||..+++.|.+.++-+.-+.+.+.+ ++.+++++ +..+++. .+++++.-++-..|-
T Consensus 823 --LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTr----------kFkLdedVdL~eiAk~-cp~~~TGADlYsLCS 889 (953)
T KOG0736|consen 823 --LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTR----------KFKLDEDVDLVEIAKK-CPPNMTGADLYSLCS 889 (953)
T ss_pred --ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHH----------HccCCCCcCHHHHHhh-CCcCCchhHHHHHHH
Confidence 4567777 899999999999866554433222221 23344443 3445554 567777789999999
Q ss_pred HHHHHHHHHHHHh
Q 047225 241 RLLEDNLAEIILT 253 (287)
Q Consensus 241 ~~~~~~~~~~~~~ 253 (287)
+++..++.+.+-.
T Consensus 890 dA~l~AikR~i~~ 902 (953)
T KOG0736|consen 890 DAMLAAIKRTIHD 902 (953)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998777543
No 92
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=4.6e-15 Score=131.97 Aligned_cols=169 Identities=26% Similarity=0.369 Sum_probs=114.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||.|||++|.+- +.++++...+++.+- +.| +|....+.++.+.+.+..+||||||+
T Consensus 339 GVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFdEm-----~VG-----vGArRVRdLF~aAk~~APcIIFIDEi 405 (752)
T KOG0734|consen 339 GVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFDEM-----FVG-----VGARRVRDLFAAAKARAPCIIFIDEI 405 (752)
T ss_pred ceEEeCCCCCchhHHHHHhhccc---CCCeEeccccchhhh-----hhc-----ccHHHHHHHHHHHHhcCCeEEEEech
Confidence 49999999999999999999887 789998888887642 222 23334467888888888899999999
Q ss_pred ccc-----cHHH---HHHHHHhhcC--ceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCC
Q 047225 99 EKA-----HRDV---LNVMLQLLDD--GRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFR 168 (287)
Q Consensus 99 d~~-----~~~~---~~~L~~~l~~--~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
|-. +.+. -..|.+++-+ |...+ ..++||.++|.+.. + +
T Consensus 406 DavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN--------eGiIvigATNfpe~----------------L--------D 453 (752)
T KOG0734|consen 406 DAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN--------EGIIVIGATNFPEA----------------L--------D 453 (752)
T ss_pred hhhcccCCccHHHHHHHHHHHHHHHhcCcCcC--------CceEEEeccCChhh----------------h--------h
Confidence 943 2222 2234444432 21111 25688889997632 2 3
Q ss_pred hhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 169 PEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 169 ~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
++|. .|||..|.+|-|+-....+|+..++.+. ..++++=-.+... -.++++.-++.+.++.+..
T Consensus 454 ~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki-----------~~~~~VD~~iiAR-GT~GFsGAdLaNlVNqAAl 519 (752)
T KOG0734|consen 454 KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI-----------PLDEDVDPKIIAR-GTPGFSGADLANLVNQAAL 519 (752)
T ss_pred HHhcCCCccceeEecCCCCcccHHHHHHHHHhcC-----------CcccCCCHhHhcc-CCCCCchHHHHHHHHHHHH
Confidence 4444 8999999999999999999998888653 2222222222222 3556666788877776544
No 93
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=2.2e-14 Score=133.52 Aligned_cols=190 Identities=16% Similarity=0.215 Sum_probs=118.6
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC----CceEEe-cccccccc-cchhhhh-CCCCCCCccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK----EAMVRI-DMSEYMEK-HTVSKFF-GSPPGYVGFE 76 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~~~-~~~~~~~~-~~~~~~~-~~~~~~~~~~ 76 (287)
+.+++.+.+. +..+.++|+||+|||||++|+.+++.+.-.. .++-.+ .|...... ....+.+ -......|.+
T Consensus 23 ~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd 101 (584)
T PRK14952 23 EPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVD 101 (584)
T ss_pred HHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHH
Confidence 3455555543 3332479999999999999999999884221 111111 11111100 0000000 0111122333
Q ss_pred chhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCc
Q 047225 77 NGGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGS 152 (287)
Q Consensus 77 ~~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~ 152 (287)
..+.+.+.+.. +.+.|++|||++.++...+++|++.+++. ...++||++++...
T Consensus 102 ~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEp-----------p~~~~fIL~tte~~----------- 159 (584)
T PRK14952 102 DTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEP-----------PEHLIFIFATTEPE----------- 159 (584)
T ss_pred HHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcC-----------CCCeEEEEEeCChH-----------
Confidence 33333333322 45679999999999999999999999972 13556777775432
Q ss_pred hHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCc
Q 047225 153 DQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGA 232 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~ 232 (287)
.+.+.+.+|+ ..+.|.+++.+++.+++...+.+. .+.++++++..++..+. .++
T Consensus 160 -------------kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~e---------gi~i~~~al~~Ia~~s~---Gdl 213 (584)
T PRK14952 160 -------------KVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQE---------GVVVDDAVYPLVIRAGG---GSP 213 (584)
T ss_pred -------------hhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCH
Confidence 2347899998 999999999999999997776542 35789999999987643 345
Q ss_pred hhHHHHHHHH
Q 047225 233 RPLRRAIGRL 242 (287)
Q Consensus 233 r~l~~~i~~~ 242 (287)
|.+...++++
T Consensus 214 R~aln~Ldql 223 (584)
T PRK14952 214 RDTLSVLDQL 223 (584)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 94
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.8e-14 Score=132.84 Aligned_cols=190 Identities=15% Similarity=0.229 Sum_probs=118.5
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC----CceEEe-cccccccccchhhhhC-CCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK----EAMVRI-DMSEYMEKHTVSKFFG-SPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~ 77 (287)
+.++..+... +..+.++|+||+|+|||++|+.+++.+.... .++..+ .|..... ....+++. ......|.+.
T Consensus 26 ~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~-~~~~dlieidaas~~gvd~ 103 (546)
T PRK14957 26 NSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINN-NSFIDLIEIDAASRTGVEE 103 (546)
T ss_pred HHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhc-CCCCceEEeecccccCHHH
Confidence 3444445443 2233489999999999999999999884211 111110 0000000 00001110 1112223333
Q ss_pred hhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+.. +++.|++|||+|+++...++.|++.+++.. ..+.||++|+...
T Consensus 104 ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp-----------~~v~fIL~Ttd~~------------ 160 (546)
T PRK14957 104 TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPP-----------EYVKFILATTDYH------------ 160 (546)
T ss_pred HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCC-----------CCceEEEEECChh------------
Confidence 3344443332 456799999999999999999999999731 2445676664321
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCch
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r 233 (287)
.+.+.+.+|+ ..+.|.+++.+++.+++...+.+. .+.++++++..++..+. .++|
T Consensus 161 ------------kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~e---------gi~~e~~Al~~Ia~~s~---GdlR 215 (546)
T PRK14957 161 ------------KIPVTILSRC-IQLHLKHISQADIKDQLKIILAKE---------NINSDEQSLEYIAYHAK---GSLR 215 (546)
T ss_pred ------------hhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHH
Confidence 2346799999 999999999999999997777552 36789999999998753 3455
Q ss_pred hHHHHHHHHH
Q 047225 234 PLRRAIGRLL 243 (287)
Q Consensus 234 ~l~~~i~~~~ 243 (287)
.+...+++++
T Consensus 216 ~alnlLek~i 225 (546)
T PRK14957 216 DALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHH
Confidence 5555555433
No 95
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.62 E-value=1.9e-14 Score=118.17 Aligned_cols=192 Identities=18% Similarity=0.248 Sum_probs=123.0
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCC-cEEE
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRP-HSVI 93 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il 93 (287)
.|.+|++|+|+.|||||++++++...+...+..++.+.-.+..+- ..+.+.++..+ .-||
T Consensus 50 ~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l-------------------~~l~~~l~~~~~kFIl 110 (249)
T PF05673_consen 50 LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL-------------------PELLDLLRDRPYKFIL 110 (249)
T ss_pred CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH-------------------HHHHHHHhcCCCCEEE
Confidence 456689999999999999999999999888888888877665543 35566666544 3599
Q ss_pred EEcCcccccHH-HHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhh-ccCCchHHHHHHHHHHHhcCChhH
Q 047225 94 LFDEIEKAHRD-VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARE-SILGSDQMERGVAEELRRRFRPEF 171 (287)
Q Consensus 94 ~iDeid~~~~~-~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 171 (287)
|+||+..-..+ .-..|..+++.+- .-.+.|+++.+|||.-.-.-... +-.+..+-+-...+..++.+ +|
T Consensus 111 f~DDLsFe~~d~~yk~LKs~LeGgl-------e~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEkl--SL 181 (249)
T PF05673_consen 111 FCDDLSFEEGDTEYKALKSVLEGGL-------EARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKL--SL 181 (249)
T ss_pred EecCCCCCCCcHHHHHHHHHhcCcc-------ccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHH--hH
Confidence 99998744333 3456777777532 22346889999999732111000 00000000011122222333 68
Q ss_pred HhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHH-H-hccCCCCCchhHHHHHHHHH
Q 047225 172 LNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLI-E-EGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 172 ~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~-~-~~~~~~~~~r~l~~~i~~~~ 243 (287)
.+||+-.+.|.||+.++..+|+..++.++ .+.++++.+..-+ + ..+..+.+.|..++.++.+.
T Consensus 182 sDRFGL~l~F~~~~q~~YL~IV~~~~~~~---------g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~~l~ 246 (249)
T PF05673_consen 182 SDRFGLWLSFYPPDQEEYLAIVRHYAERY---------GLELDEEELRQEALQWALRRGGRSGRTARQFIDDLA 246 (249)
T ss_pred HHhCCcEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 89999999999999999999998888654 3455533222222 1 22334556788888887543
No 96
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.62 E-value=5.5e-15 Score=135.46 Aligned_cols=189 Identities=14% Similarity=0.210 Sum_probs=125.1
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCC--CCceEEecccccccccchhhhhCCCCCCCcccchhh
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGS--KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQ 80 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
...++....+|+...++++|+||+|+|||+|++++++.+... +..++++++.++.... ...+.. .....
T Consensus 134 ~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~--~~~~~~-------~~~~~ 204 (450)
T PRK00149 134 HAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDF--VNALRN-------NTMEE 204 (450)
T ss_pred HHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH--HHHHHc-------CcHHH
Confidence 344555555666555679999999999999999999998543 4567788887654321 111100 01134
Q ss_pred HHHHHHhCCcEEEEEcCcccccH--HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHH
Q 047225 81 LTEAVRHRPHSVILFDEIEKAHR--DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERG 158 (287)
Q Consensus 81 ~~~~~~~~~~~il~iDeid~~~~--~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~ 158 (287)
+.+.+... .+|+|||++.+.. ..+..|+.+++.... .+..+|+++|..+..+.
T Consensus 205 ~~~~~~~~--dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~----------~~~~iiits~~~p~~l~------------- 259 (450)
T PRK00149 205 FKEKYRSV--DVLLIDDIQFLAGKERTQEEFFHTFNALHE----------AGKQIVLTSDRPPKELP------------- 259 (450)
T ss_pred HHHHHhcC--CEEEEehhhhhcCCHHHHHHHHHHHHHHHH----------CCCcEEEECCCCHHHHH-------------
Confidence 45555543 4999999997633 355666665553210 01236777776544331
Q ss_pred HHHHHHhcCChhHHhccC--ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHH
Q 047225 159 VAEELRRRFRPEFLNRID--EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLR 236 (287)
Q Consensus 159 ~~~~~~~~~~~~l~~r~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~ 236 (287)
.+.+.+.+||. ..+.+.||+.+++.+|++..+... .+.++++++++|+.... .++|.+.
T Consensus 260 -------~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~---------~~~l~~e~l~~ia~~~~---~~~R~l~ 320 (450)
T PRK00149 260 -------GLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE---------GIDLPDEVLEFIAKNIT---SNVRELE 320 (450)
T ss_pred -------HHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHcCcC---CCHHHHH
Confidence 13578889995 469999999999999997776531 46899999999998742 3567887
Q ss_pred HHHHHHHH
Q 047225 237 RAIGRLLE 244 (287)
Q Consensus 237 ~~i~~~~~ 244 (287)
.+++++..
T Consensus 321 ~~l~~l~~ 328 (450)
T PRK00149 321 GALNRLIA 328 (450)
T ss_pred HHHHHHHH
Confidence 78776654
No 97
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.62 E-value=2.1e-14 Score=127.05 Aligned_cols=174 Identities=17% Similarity=0.334 Sum_probs=111.6
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC--CceEEecccccccccc--h------hhhhCCCCCCC
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK--EAMVRIDMSEYMEKHT--V------SKFFGSPPGYV 73 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~--~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~ 73 (287)
++++..+..+.. ++++|+||||||||++++++++.+.... ..++.++++++..... + ....+.. ...
T Consensus 25 ~~L~~~~~~~~~--~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 101 (337)
T PRK12402 25 ERLSRAVDSPNL--PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTD-KRI 101 (337)
T ss_pred HHHHHHHhCCCC--ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhh-hhh
Confidence 444555555432 2699999999999999999999985432 3567788876532210 0 0000000 000
Q ss_pred cccchhhHHHHHH---h-----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhh
Q 047225 74 GFENGGQLTEAVR---H-----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIA 145 (287)
Q Consensus 74 ~~~~~~~~~~~~~---~-----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~ 145 (287)
+......+.+.+. . .+..+|+|||++.++.+.+..|.++++... +.+.+|++++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~-----------~~~~~Il~~~~~~---- 166 (337)
T PRK12402 102 RSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYS-----------RTCRFIIATRQPS---- 166 (337)
T ss_pred ccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhcc-----------CCCeEEEEeCChh----
Confidence 0000111222111 1 334699999999999999999999988531 1345666665322
Q ss_pred hhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 146 RESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
.+.+.+.+|+ ..+.++|++.+++.+++...+.+. .+.+++++++.++..+
T Consensus 167 --------------------~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~al~~l~~~~ 216 (337)
T PRK12402 167 --------------------KLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAE---------GVDYDDDGLELIAYYA 216 (337)
T ss_pred --------------------hCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence 2245788998 789999999999988887765432 3568999999999875
No 98
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=7.8e-15 Score=133.61 Aligned_cols=193 Identities=14% Similarity=0.220 Sum_probs=129.1
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhc--CCCCceEEecccccccccchhhhhCCCCCCCcccchhh
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYF--GSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQ 80 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
...++..+.+|+.+.++++|+|++|+|||+|++++++.+. ..+..++++++.++.... ...++.. ......
T Consensus 127 ~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~--~~~l~~~-----~~~~~~ 199 (450)
T PRK14087 127 FIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKA--VDILQKT-----HKEIEQ 199 (450)
T ss_pred HHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH--HHHHHHh-----hhHHHH
Confidence 3344555566666666799999999999999999999764 335677788776654321 1111100 000112
Q ss_pred HHHHHHhCCcEEEEEcCccccc--HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHH
Q 047225 81 LTEAVRHRPHSVILFDEIEKAH--RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERG 158 (287)
Q Consensus 81 ~~~~~~~~~~~il~iDeid~~~--~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~ 158 (287)
+...+... .+|+|||++.+. ...++.|+.+++..... +..+|+|++..+..+
T Consensus 200 ~~~~~~~~--dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~----------~k~iIltsd~~P~~l-------------- 253 (450)
T PRK14087 200 FKNEICQN--DVLIIDDVQFLSYKEKTNEIFFTIFNNFIEN----------DKQLFFSSDKSPELL-------------- 253 (450)
T ss_pred HHHHhccC--CEEEEeccccccCCHHHHHHHHHHHHHHHHc----------CCcEEEECCCCHHHH--------------
Confidence 33333333 499999999875 66788888877753211 125788888765432
Q ss_pred HHHHHHhcCChhHHhccC--ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHH
Q 047225 159 VAEELRRRFRPEFLNRID--EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLR 236 (287)
Q Consensus 159 ~~~~~~~~~~~~l~~r~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~ 236 (287)
..+.+.|.+||. ..+.+.||+.+++.+++++.+... +..+.++++++++|+...- .++|.+.
T Consensus 254 ------~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~-------gl~~~l~~evl~~Ia~~~~---gd~R~L~ 317 (450)
T PRK14087 254 ------NGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ-------NIKQEVTEEAINFISNYYS---DDVRKIK 317 (450)
T ss_pred ------hhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc-------CCCCCCCHHHHHHHHHccC---CCHHHHH
Confidence 235678999994 569999999999999998777532 3234799999999998643 4567887
Q ss_pred HHHHHHHH
Q 047225 237 RAIGRLLE 244 (287)
Q Consensus 237 ~~i~~~~~ 244 (287)
.+++++..
T Consensus 318 gaL~~l~~ 325 (450)
T PRK14087 318 GSVSRLNF 325 (450)
T ss_pred HHHHHHHH
Confidence 77776654
No 99
>PRK04195 replication factor C large subunit; Provisional
Probab=99.61 E-value=9.3e-15 Score=134.94 Aligned_cols=160 Identities=26% Similarity=0.380 Sum_probs=111.9
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEc
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 96 (287)
..+++|+||||||||++++++++.+ +..++.++.++......+...++..... ..+. .....+|+||
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~~~~i~~~i~~~~~~------~sl~----~~~~kvIiID 105 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTADVIERVAGEAATS------GSLF----GARRKLILLD 105 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccccccHHHHHHHHHHhhcc------Cccc----CCCCeEEEEe
Confidence 3479999999999999999999998 6778888887755433232222211100 0111 0245799999
Q ss_pred CcccccH----HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh-hH
Q 047225 97 EIEKAHR----DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP-EF 171 (287)
Q Consensus 97 eid~~~~----~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l 171 (287)
|+|.+.. ..+..|+++++.. +..+|+++|.... +.+ .+
T Consensus 106 EaD~L~~~~d~~~~~aL~~~l~~~-------------~~~iIli~n~~~~------------------------~~~k~L 148 (482)
T PRK04195 106 EVDGIHGNEDRGGARAILELIKKA-------------KQPIILTANDPYD------------------------PSLREL 148 (482)
T ss_pred cCcccccccchhHHHHHHHHHHcC-------------CCCEEEeccCccc------------------------cchhhH
Confidence 9998865 5678888888742 2346677775432 123 56
Q ss_pred HhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 172 LNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 172 ~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
.+++ ..+.|++|+..++..++...+... .+.+++++++.|+..+. ++++.+++.+
T Consensus 149 rsr~-~~I~f~~~~~~~i~~~L~~i~~~e---------gi~i~~eaL~~Ia~~s~------GDlR~ain~L 203 (482)
T PRK04195 149 RNAC-LMIEFKRLSTRSIVPVLKRICRKE---------GIECDDEALKEIAERSG------GDLRSAINDL 203 (482)
T ss_pred hccc-eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC------CCHHHHHHHH
Confidence 6777 889999999999999997776532 45789999999998753 5777777744
No 100
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.61 E-value=3e-14 Score=124.97 Aligned_cols=151 Identities=23% Similarity=0.292 Sum_probs=108.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh----CCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH----RPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~ 94 (287)
.++|+||||+|||++++++++.+ +.++..+++++ .....+. ..+...... ..+.+++
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~-~~~~~i~---------------~~l~~~~~~~~~~~~~~vli 105 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD-CRIDFVR---------------NRLTRFASTVSLTGGGKVII 105 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc-ccHHHHH---------------HHHHHHHHhhcccCCCeEEE
Confidence 46669999999999999999987 45667777765 2111110 111111111 2457999
Q ss_pred EcCcccc-cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHh
Q 047225 95 FDEIEKA-HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLN 173 (287)
Q Consensus 95 iDeid~~-~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (287)
|||+|.+ ..+.++.|..+++... .++.+|+++|... .+.+++.+
T Consensus 106 iDe~d~l~~~~~~~~L~~~le~~~-----------~~~~~Ilt~n~~~------------------------~l~~~l~s 150 (316)
T PHA02544 106 IDEFDRLGLADAQRHLRSFMEAYS-----------KNCSFIITANNKN------------------------GIIEPLRS 150 (316)
T ss_pred EECcccccCHHHHHHHHHHHHhcC-----------CCceEEEEcCChh------------------------hchHHHHh
Confidence 9999999 7778888988888621 2457888887542 34578999
Q ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhcc
Q 047225 174 RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGY 226 (287)
Q Consensus 174 r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 226 (287)
|| ..+.|++|+.++..+++...+.+....+... .+.++++++..++...+
T Consensus 151 R~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~--~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 151 RC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAE--GVEVDMKVLAALVKKNF 200 (316)
T ss_pred hc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhc--CCCCCHHHHHHHHHhcC
Confidence 99 7899999999999999888776665444433 45789999999998766
No 101
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=8.5e-15 Score=135.40 Aligned_cols=187 Identities=14% Similarity=0.191 Sum_probs=127.4
Q ss_pred hhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcC--CCCceEEecccccccccchhhhhCCCCCCCcccchhhHH
Q 047225 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFG--SKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLT 82 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
.++..+.++++..++++|+|++|+|||+|++++++.+.. .+..++++++.++..... ..+.. .....+.
T Consensus 302 aa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~-~al~~--------~~~~~f~ 372 (617)
T PRK14086 302 AAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI-NSIRD--------GKGDSFR 372 (617)
T ss_pred HHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH-HHHHh--------ccHHHHH
Confidence 444545555555556999999999999999999998743 356778888876653211 11100 0012344
Q ss_pred HHHHhCCcEEEEEcCccccc--HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHH
Q 047225 83 EAVRHRPHSVILFDEIEKAH--RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVA 160 (287)
Q Consensus 83 ~~~~~~~~~il~iDeid~~~--~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
+.+... .+|+|||++.+. ...+..|+.+++..... +..+|+|+|..+..+.
T Consensus 373 ~~y~~~--DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~----------gk~IIITSd~~P~eL~--------------- 425 (617)
T PRK14086 373 RRYREM--DILLVDDIQFLEDKESTQEEFFHTFNTLHNA----------NKQIVLSSDRPPKQLV--------------- 425 (617)
T ss_pred HHhhcC--CEEEEehhccccCCHHHHHHHHHHHHHHHhc----------CCCEEEecCCChHhhh---------------
Confidence 444444 599999999773 34567777777653211 2247778887655431
Q ss_pred HHHHhcCChhHHhccC--ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHH
Q 047225 161 EELRRRFRPEFLNRID--EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRA 238 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~ 238 (287)
.+.+.|.+||. ..+.+.+|+.++..+|++..... ..+.++++++++|+.... .++|.|..+
T Consensus 426 -----~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~---------r~l~l~~eVi~yLa~r~~---rnvR~Lega 488 (617)
T PRK14086 426 -----TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ---------EQLNAPPEVLEFIASRIS---RNIRELEGA 488 (617)
T ss_pred -----hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHhcc---CCHHHHHHH
Confidence 34678999995 55899999999999999766543 157899999999998732 356888888
Q ss_pred HHHHHH
Q 047225 239 IGRLLE 244 (287)
Q Consensus 239 i~~~~~ 244 (287)
++++..
T Consensus 489 L~rL~a 494 (617)
T PRK14086 489 LIRVTA 494 (617)
T ss_pred HHHHHH
Confidence 887754
No 102
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.61 E-value=1.6e-14 Score=119.05 Aligned_cols=173 Identities=21% Similarity=0.339 Sum_probs=129.7
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccc-------hhh--hhCCCCCCCcccchhhHHHHHHh
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT-------VSK--FFGSPPGYVGFENGGQLTEAVRH 87 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~ 87 (287)
.+|++++||+|+||.|.+.++.+.+++.+.+-..+....+...+. +.. .+.-.|+..|+..---+.+.++.
T Consensus 34 ~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKe 113 (351)
T KOG2035|consen 34 FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKE 113 (351)
T ss_pred CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHH
Confidence 458999999999999999999999998777666666555544321 111 11122334444332222222222
Q ss_pred ------------CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHH
Q 047225 88 ------------RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQM 155 (287)
Q Consensus 88 ------------~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~ 155 (287)
.++.+++|.|+|.+..+.|.+|++-|+... +++.+|+.+|.....
T Consensus 114 vAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs-----------~~~RlIl~cns~Sri------------ 170 (351)
T KOG2035|consen 114 VAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS-----------SNCRLILVCNSTSRI------------ 170 (351)
T ss_pred HHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHh-----------cCceEEEEecCcccc------------
Confidence 456899999999999999999999999632 467899999986543
Q ss_pred HHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhH
Q 047225 156 ERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l 235 (287)
-+++.+|+ ..+.+|.|+.+|+..++...+.+. .+.++.+.+..|++.+. |.+
T Consensus 171 ------------IepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE---------~l~lp~~~l~rIa~kS~------~nL 222 (351)
T KOG2035|consen 171 ------------IEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKE---------GLQLPKELLKRIAEKSN------RNL 222 (351)
T ss_pred ------------hhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHh---------cccCcHHHHHHHHHHhc------ccH
Confidence 37899999 999999999999999998888764 57888999999999865 788
Q ss_pred HHHHH
Q 047225 236 RRAIG 240 (287)
Q Consensus 236 ~~~i~ 240 (287)
|+++-
T Consensus 223 RrAll 227 (351)
T KOG2035|consen 223 RRALL 227 (351)
T ss_pred HHHHH
Confidence 88876
No 103
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.61 E-value=9.4e-15 Score=146.31 Aligned_cols=185 Identities=13% Similarity=0.166 Sum_probs=118.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccc---hhhh--hC------------------------CC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT---VSKF--FG------------------------SP 69 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~---~~~~--~~------------------------~~ 69 (287)
.++|+||||||||.+|+++|... +.+++.++++++..... +.+. .| ..
T Consensus 1632 GILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~ 1708 (2281)
T CHL00206 1632 GILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNAL 1708 (2281)
T ss_pred ceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchh
Confidence 59999999999999999999998 78999999887664210 0000 00 00
Q ss_pred CCCCcccc----hhhHHHHHHhCCcEEEEEcCcccccHH-----HHHHHHHhhcCceeecCCCceeeccceEEEEeecCC
Q 047225 70 PGYVGFEN----GGQLTEAVRHRPHSVILFDEIEKAHRD-----VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIG 140 (287)
Q Consensus 70 ~~~~~~~~----~~~~~~~~~~~~~~il~iDeid~~~~~-----~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~ 140 (287)
.+.++... ...+++.++...++||+|||||.+... .+..|+..|+..... -...+++||+|||.+
T Consensus 1709 ~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~------~s~~~VIVIAATNRP 1782 (2281)
T CHL00206 1709 TMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCER------CSTRNILVIASTHIP 1782 (2281)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccccc------CCCCCEEEEEeCCCc
Confidence 00111111 234677777777799999999987653 245666666532110 112356899999986
Q ss_pred chhhhhhccCCchHHHHHHHHHHHhcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChh--
Q 047225 141 DSVIARESILGSDQMERGVAEELRRRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHT-- 216 (287)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~-- 216 (287)
. .++|+|++ |||..|.++.|+..+..+++...+.. . + +.+.++
T Consensus 1783 D------------------------~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t-----k--g--~~L~~~~v 1829 (2281)
T CHL00206 1783 Q------------------------KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT-----R--G--FHLEKKMF 1829 (2281)
T ss_pred c------------------------cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh-----c--C--CCCCcccc
Confidence 4 45789996 99999999999988877776533211 0 1 122222
Q ss_pred HHHHHHHhccCCCCCchhHHHHHHHHHHHHH
Q 047225 217 FKKKLIEEGYNPSYGARPLRRAIGRLLEDNL 247 (287)
Q Consensus 217 ~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~ 247 (287)
-++.++.. .++++++++...++.++..+.
T Consensus 1830 dl~~LA~~--T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206 1830 HTNGFGSI--TMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred cHHHHHHh--CCCCCHHHHHHHHHHHHHHHH
Confidence 24555554 456677888888877665543
No 104
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.61 E-value=1.4e-14 Score=126.38 Aligned_cols=144 Identities=15% Similarity=0.202 Sum_probs=97.1
Q ss_pred HhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecC-CCceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 86 RHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG-KGQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 86 ~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~-~g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
...++++||+||++++++.+++.|++.|+++..... .|.....+ .+++|+++|+...
T Consensus 125 ~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~--------------------- 183 (334)
T PRK13407 125 ARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEG--------------------- 183 (334)
T ss_pred EEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccC---------------------
Confidence 334557999999999999999999999999875433 46555554 6788888887432
Q ss_pred HhcCChhHHhccCceEEeCCCCH-HHHHHHHHHHHHH--------------------HHHHHHhcCcEEEeChhHHHHHH
Q 047225 164 RRRFRPEFLNRIDEVIVFRQLNK-MQLMEIVDIMLKE--------------------IYERLEAKNMELTVTHTFKKKLI 222 (287)
Q Consensus 164 ~~~~~~~l~~r~~~~i~~~~~~~-~~~~~il~~~l~~--------------------~~~~~~~~~~~~~i~~~~~~~l~ 222 (287)
.+++++++||...+.+++++. ++..+++...... ....++..-..+.++++++++++
T Consensus 184 --~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~ 261 (334)
T PRK13407 184 --ELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCA 261 (334)
T ss_pred --CCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHH
Confidence 467899999988899988886 7767777653211 01111221224789999999998
Q ss_pred HhccCCC-CCchhHHHHHHHHHHHHHHHHHHhccC
Q 047225 223 EEGYNPS-YGARPLRRAIGRLLEDNLAEIILTGYI 256 (287)
Q Consensus 223 ~~~~~~~-~~~r~l~~~i~~~~~~~~~~~~~~~~~ 256 (287)
+...... .| .+..+- ++..+-+.+++.++.
T Consensus 262 ~l~~~~~~~s---~Ra~i~-l~~aA~a~A~l~Gr~ 292 (334)
T PRK13407 262 ALCIALGSDG---LRGELT-LLRAARALAAFEGAE 292 (334)
T ss_pred HHHHHHCCCC---chHHHH-HHHHHHHHHHHcCCC
Confidence 8743322 23 333333 555555666665543
No 105
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.61 E-value=1.4e-14 Score=134.17 Aligned_cols=168 Identities=26% Similarity=0.356 Sum_probs=106.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||++++++|... +.+++.++++++.... .|. +......+++.+.....+||||||+
T Consensus 90 giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~~-----~g~-----~~~~l~~~f~~a~~~~p~Il~iDEi 156 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEMF-----VGV-----GASRVRDLFEQAKKNAPCIIFIDEI 156 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHHHH-----hcc-----cHHHHHHHHHHHHhcCCCEEEEech
Confidence 59999999999999999999988 6788888877654321 110 1111234555555555689999999
Q ss_pred ccccH--------------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 99 EKAHR--------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 99 d~~~~--------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|.+.. ..++.|+..++.- . ...+++||++||.+.
T Consensus 157 d~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~--~-------~~~~v~vI~aTn~~~----------------------- 204 (495)
T TIGR01241 157 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF--G-------TNTGVIVIAATNRPD----------------------- 204 (495)
T ss_pred hhhhhccccCcCCccHHHHHHHHHHHhhhccc--c-------CCCCeEEEEecCChh-----------------------
Confidence 97532 1223333333321 0 112467889998753
Q ss_pred hcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 165 RRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 165 ~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
.+++++++ ||+..+.+++|+.++..+|++.++... . +. .+..+..++.. ..+++..+++.+++++
T Consensus 205 -~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~-------~--~~-~~~~l~~la~~--t~G~sgadl~~l~~eA 271 (495)
T TIGR01241 205 -VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNK-------K--LA-PDVDLKAVARR--TPGFSGADLANLLNEA 271 (495)
T ss_pred -hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcC-------C--CC-cchhHHHHHHh--CCCCCHHHHHHHHHHH
Confidence 34677775 999999999999999999998776432 1 11 12223344443 2234556666666654
Q ss_pred HH
Q 047225 243 LE 244 (287)
Q Consensus 243 ~~ 244 (287)
..
T Consensus 272 ~~ 273 (495)
T TIGR01241 272 AL 273 (495)
T ss_pred HH
Confidence 33
No 106
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.61 E-value=2.6e-15 Score=136.77 Aligned_cols=198 Identities=22% Similarity=0.310 Sum_probs=153.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCC-cccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYV-GFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
++++.|.|||||-.+++++++... ...+++.+||..+.+......+||..+|.. |... .-....+...+.+.+|+||
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~~GafTga~~-kG~~g~~~~A~gGtlFlde 415 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYVAGAFTGARR-KGYKGKLEQADGGTLFLDE 415 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccCccccccchh-ccccccceecCCCccHHHH
Confidence 699999999999999999999987 788999999999998877788998766642 2221 2233445555678999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC-
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID- 176 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~- 176 (287)
|..++-..|..|++++++|.+.--.|.. -.-++.||.+|+.+-. ..+. +..|+.+|..|+.
T Consensus 416 Igd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~--------------~lv~---~g~fredLyyrL~~ 477 (606)
T COG3284 416 IGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLA--------------QLVE---QGRFREDLYYRLNA 477 (606)
T ss_pred hhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHH--------------HHHH---cCCchHHHHHHhcC
Confidence 9999999999999999999877545655 4558899999976532 2222 3589999999996
Q ss_pred ceEEeCCCC-HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 177 EVIVFRQLN-KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 177 ~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
..|.+||+. +.+...++.+++.+... ..+.++++++..+..+.|+. +.|++..+++.+..
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~------~~~~l~~~~~~~l~~~~WPG--Nirel~~v~~~~~~ 538 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKREND------WRLQLDDDALARLLAYRWPG--NIRELDNVIERLAA 538 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccC------CCccCCHHHHHHHHhCCCCC--cHHHHHHHHHHHHH
Confidence 449999998 55666666666654332 25789999999999999976 55999999986544
No 107
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=2.3e-14 Score=127.69 Aligned_cols=189 Identities=15% Similarity=0.188 Sum_probs=114.6
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC----CceEEe-cccccccccchhhhhC-CCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK----EAMVRI-DMSEYMEKHTVSKFFG-SPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~ 77 (287)
+.++..+... +..+.++|+||+|+|||++|+.+++.+.... .++..+ .|.+..... ..+++. ......+...
T Consensus 26 ~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~-~~d~~~~~~~~~~~v~~ 103 (363)
T PRK14961 26 TAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGL-CLDLIEIDAASRTKVEE 103 (363)
T ss_pred HHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC-CCceEEecccccCCHHH
Confidence 3444544443 2333579999999999999999999984211 111000 111111000 000000 0001111112
Q ss_pred hhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
...+.+.+.. +.+.+++|||+|.++...++.|++.+++.. +.+.+|++++...
T Consensus 104 ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~-----------~~~~fIl~t~~~~------------ 160 (363)
T PRK14961 104 MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPP-----------QHIKFILATTDVE------------ 160 (363)
T ss_pred HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCC-----------CCeEEEEEcCChH------------
Confidence 2233333222 345799999999999999999999999731 2446777665321
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCch
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r 233 (287)
.+.+.+.+|+ ..+.|+|++.+++.+++...+... ++.+++++++.++..+- .++|
T Consensus 161 ------------~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~---------g~~i~~~al~~ia~~s~---G~~R 215 (363)
T PRK14961 161 ------------KIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKE---------SIDTDEYALKLIAYHAH---GSMR 215 (363)
T ss_pred ------------hhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHH
Confidence 2457889999 899999999999999997776542 35789999999988653 3455
Q ss_pred hHHHHHHHH
Q 047225 234 PLRRAIGRL 242 (287)
Q Consensus 234 ~l~~~i~~~ 242 (287)
.+.+.++++
T Consensus 216 ~al~~l~~~ 224 (363)
T PRK14961 216 DALNLLEHA 224 (363)
T ss_pred HHHHHHHHH
Confidence 555555443
No 108
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.60 E-value=2.3e-14 Score=138.61 Aligned_cols=173 Identities=26% Similarity=0.381 Sum_probs=120.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~iD 96 (287)
.++|+||||||||++|+++|..+ +.+++.+++++.... +.|.. ....++..+.....+|+|||
T Consensus 489 giLL~GppGtGKT~lakalA~e~---~~~fi~v~~~~l~~~------------~vGese~~i~~~f~~A~~~~p~iifiD 553 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVATES---GANFIAVRGPEILSK------------WVGESEKAIREIFRKARQAAPAIIFFD 553 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHhhc------------ccCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 59999999999999999999998 677888877654322 11111 12456666666677999999
Q ss_pred CcccccH------------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 97 EIEKAHR------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 97 eid~~~~------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|+|.+.+ .+.+.|+..++.- ....+++||+|||.+.
T Consensus 554 Eid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~---------~~~~~v~vI~aTn~~~----------------------- 601 (733)
T TIGR01243 554 EIDAIAPARGARFDTSVTDRIVNQLLTEMDGI---------QELSNVVVIAATNRPD----------------------- 601 (733)
T ss_pred ChhhhhccCCCCCCccHHHHHHHHHHHHhhcc---------cCCCCEEEEEeCCChh-----------------------
Confidence 9996522 3445555555521 0123678999999763
Q ss_pred hcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 165 RRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 165 ~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
.+++++++ ||+..+.+++|+.++..+|++..+.+. .+. ++.-++.++.. ..+++..++..++..+
T Consensus 602 -~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~---------~~~-~~~~l~~la~~--t~g~sgadi~~~~~~A 668 (733)
T TIGR01243 602 -ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM---------PLA-EDVDLEELAEM--TEGYTGADIEAVCREA 668 (733)
T ss_pred -hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC---------CCC-ccCCHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 35678885 999999999999999999996554321 111 12235666664 3356778999999988
Q ss_pred HHHHHHHHH
Q 047225 243 LEDNLAEII 251 (287)
Q Consensus 243 ~~~~~~~~~ 251 (287)
...++.+..
T Consensus 669 ~~~a~~~~~ 677 (733)
T TIGR01243 669 AMAALRESI 677 (733)
T ss_pred HHHHHHHHh
Confidence 888876553
No 109
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.60 E-value=3.7e-14 Score=133.85 Aligned_cols=175 Identities=21% Similarity=0.250 Sum_probs=114.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC-------CCCceEEecccccccc-cch-hhhhCCCCC--CCcccc-------hhh
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG-------SKEAMVRIDMSEYMEK-HTV-SKFFGSPPG--YVGFEN-------GGQ 80 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~-------~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~--~~~~~~-------~~~ 80 (287)
+++|+||||||||++++.+++.... ...+++.++|...... ..+ ..+++.... +.+... ...
T Consensus 177 ~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~ 256 (615)
T TIGR02903 177 HIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEP 256 (615)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCch
Confidence 6999999999999999999887632 2457888888765311 111 122322100 000000 000
Q ss_pred HHHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCcee-----------------eccceEEEEeecCCchh
Q 047225 81 LTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTV-----------------DLKNTIIIMTSNIGDSV 143 (287)
Q Consensus 81 ~~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i-----------------~~~~~~iI~t~n~~~~~ 143 (287)
....+.....++|||||++.+++..+..|+++++++.+....+... ...++++|++++....
T Consensus 257 ~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~- 335 (615)
T TIGR02903 257 KTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE- 335 (615)
T ss_pred hcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc-
Confidence 1112223345799999999999999999999999876543222100 1124566665544322
Q ss_pred hhhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHH
Q 047225 144 IARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIE 223 (287)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~ 223 (287)
.++++|.+|| ..+.|+|++.+++.+|+...+.+. .+.+++++++.|..
T Consensus 336 ----------------------~l~~aLrSR~-~~i~~~pls~edi~~Il~~~a~~~---------~v~ls~eal~~L~~ 383 (615)
T TIGR02903 336 ----------------------EINPALRSRC-AEVFFEPLTPEDIALIVLNAAEKI---------NVHLAAGVEELIAR 383 (615)
T ss_pred ----------------------ccCHHHHhce-eEEEeCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHH
Confidence 3467899999 678999999999999998876532 34588999999999
Q ss_pred hcc
Q 047225 224 EGY 226 (287)
Q Consensus 224 ~~~ 226 (287)
++|
T Consensus 384 ys~ 386 (615)
T TIGR02903 384 YTI 386 (615)
T ss_pred CCC
Confidence 887
No 110
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.60 E-value=1.1e-13 Score=119.93 Aligned_cols=189 Identities=14% Similarity=0.184 Sum_probs=114.9
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHH-----hC
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVR-----HR 88 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 88 (287)
..|+ .++|+||||||||.+++++++.+ +..++.++.++..... .| ... ...+.++..+. ..
T Consensus 146 k~Pl-gllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~sk~-----vG----EsE-k~IR~~F~~A~~~a~~~~ 211 (413)
T PLN00020 146 KVPL-ILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELESEN-----AG----EPG-KLIRQRYREAADIIKKKG 211 (413)
T ss_pred CCCe-EEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhcCc-----CC----cHH-HHHHHHHHHHHHHhhccC
Confidence 3455 59999999999999999999999 6778888887655331 11 100 00123443333 23
Q ss_pred CcEEEEEcCcccccH-----------HH-HHHHHHhhcCceeecCCCce---eeccceEEEEeecCCchhhhhhccCCch
Q 047225 89 PHSVILFDEIEKAHR-----------DV-LNVMLQLLDDGRVTDGKGQT---VDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 89 ~~~il~iDeid~~~~-----------~~-~~~L~~~l~~~~~~~~~g~~---i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
..+||||||+|..-+ .. ...|+.+++.-...--.|.+ -..+.+.||+|+|.+.
T Consensus 212 aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd------------ 279 (413)
T PLN00020 212 KMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS------------ 279 (413)
T ss_pred CCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc------------
Confidence 469999999995422 12 24566776642110001110 1124578899999874
Q ss_pred HHHHHHHHHHHhcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCC--
Q 047225 154 QMERGVAEELRRRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS-- 229 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~-- 229 (287)
.+.|+|++ ||+..+ ..|+.++..+|++.++.+ ..++..-+..|+... +..
T Consensus 280 ------------~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~-----------~~l~~~dv~~Lv~~f-~gq~~ 333 (413)
T PLN00020 280 ------------TLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRD-----------DGVSREDVVKLVDTF-PGQPL 333 (413)
T ss_pred ------------cCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhcc-----------CCCCHHHHHHHHHcC-CCCCc
Confidence 45789998 998765 479999999999876643 234455555565531 110
Q ss_pred --CC-------chhHHHHHHHHHHHHHHHHHHhc
Q 047225 230 --YG-------ARPLRRAIGRLLEDNLAEIILTG 254 (287)
Q Consensus 230 --~~-------~r~l~~~i~~~~~~~~~~~~~~~ 254 (287)
+| -+.+++||.+.=...+.+.+.+.
T Consensus 334 Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~~ 367 (413)
T PLN00020 334 DFFGALRARVYDDEVRKWIAEVGVENLGKKLVNS 367 (413)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC
Confidence 00 14566666666555555555553
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.60 E-value=2.5e-14 Score=127.69 Aligned_cols=175 Identities=25% Similarity=0.322 Sum_probs=112.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||++++++++.+ ..+++.+.+++.... .+|.. ......++........++|||||+
T Consensus 158 gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~l~~~-----~~g~~-----~~~i~~~f~~a~~~~p~il~iDEi 224 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVRK-----YIGEG-----ARLVREIFELAKEKAPSIIFIDEI 224 (364)
T ss_pred eEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHHHHHH-----hhhHH-----HHHHHHHHHHHHhcCCcEEEhhhh
Confidence 59999999999999999999988 455666655433211 11110 001123444555555589999999
Q ss_pred ccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+ ++..+..+.+++..-.... ...++.||+|||... .+
T Consensus 225 D~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~------~~~~v~vI~ttn~~~------------------------~l 274 (364)
T TIGR01242 225 DAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD------PRGNVKVIAATNRPD------------------------IL 274 (364)
T ss_pred hhhccccccCCCCccHHHHHHHHHHHHHhhCCC------CCCCEEEEEecCChh------------------------hC
Confidence 976 3455666666664311000 113567899998752 34
Q ss_pred ChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 168 RPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 168 ~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
++++++ ||+..|.+++|+.++..+|+..++... .....+ -...++..+ .+++.++++..+..+...
T Consensus 275 d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~-------~l~~~~---~~~~la~~t--~g~sg~dl~~l~~~A~~~ 342 (364)
T TIGR01242 275 DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM-------KLAEDV---DLEAIAKMT--EGASGADLKAICTEAGMF 342 (364)
T ss_pred ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC-------CCCccC---CHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 567764 898999999999999999996654321 111112 245555543 456778999988877776
Q ss_pred HHH
Q 047225 246 NLA 248 (287)
Q Consensus 246 ~~~ 248 (287)
++.
T Consensus 343 a~~ 345 (364)
T TIGR01242 343 AIR 345 (364)
T ss_pred HHH
Confidence 654
No 112
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.60 E-value=1.7e-14 Score=130.06 Aligned_cols=173 Identities=23% Similarity=0.331 Sum_probs=109.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||++|+++|+.+ ..+++.+..++.... ..|.. ......++........+|+||||+
T Consensus 219 gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL~~k-----~~Ge~-----~~~vr~lF~~A~~~~P~ILfIDEI 285 (438)
T PTZ00361 219 GVILYGPPGTGKTLLAKAVANET---SATFLRVVGSELIQK-----YLGDG-----PKLVRELFRVAEENAPSIVFIDEI 285 (438)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchhhhh-----hcchH-----HHHHHHHHHHHHhCCCcEEeHHHH
Confidence 59999999999999999999988 556666665543321 11110 011234555555566689999999
Q ss_pred cccc-----------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKAH-----------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~~-----------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+. .+++..+..++..-.-.. ...++.||++||... .+
T Consensus 286 D~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~------~~~~V~VI~ATNr~d------------------------~L 335 (438)
T PTZ00361 286 DAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD------SRGDVKVIMATNRIE------------------------SL 335 (438)
T ss_pred HHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc------ccCCeEEEEecCChH------------------------Hh
Confidence 9642 234555555554311000 113567899998642 23
Q ss_pred ChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChh-HHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 168 RPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHT-FKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 168 ~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~-~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
+++++ .||+..|.|++|+.++..+|+..++.+. .+.++ -++.++.. ..+++..+++.++..+..
T Consensus 336 DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~-----------~l~~dvdl~~la~~--t~g~sgAdI~~i~~eA~~ 402 (438)
T PTZ00361 336 DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM-----------TLAEDVDLEEFIMA--KDELSGADIKAICTEAGL 402 (438)
T ss_pred hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC-----------CCCcCcCHHHHHHh--cCCCCHHHHHHHHHHHHH
Confidence 56776 4999999999999999999997665432 12222 23444443 234566788888777666
Q ss_pred HHH
Q 047225 245 DNL 247 (287)
Q Consensus 245 ~~~ 247 (287)
.++
T Consensus 403 ~Al 405 (438)
T PTZ00361 403 LAL 405 (438)
T ss_pred HHH
Confidence 554
No 113
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=3.5e-14 Score=130.20 Aligned_cols=189 Identities=15% Similarity=0.230 Sum_probs=118.9
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC--------ceEEe-ccccccccc--chhhhhCCCCCC
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE--------AMVRI-DMSEYMEKH--TVSKFFGSPPGY 72 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~--------~~~~~-~~~~~~~~~--~~~~~~~~~~~~ 72 (287)
+.++..+... +..+.++|+||+|||||++|+.+|+.+.-... ++..+ +|..+.+.. .+..+ .....
T Consensus 31 ~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~ei--daas~ 107 (507)
T PRK06645 31 KVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEI--DAASK 107 (507)
T ss_pred HHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEe--eccCC
Confidence 3444444333 33346999999999999999999999832110 11100 111111100 00000 11112
Q ss_pred CcccchhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhc
Q 047225 73 VGFENGGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARES 148 (287)
Q Consensus 73 ~~~~~~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~ 148 (287)
.+......+.+.+.. +.+.|++|||++.++...++.|++.+++. .+.++||++++...
T Consensus 108 ~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-----------p~~~vfI~aTte~~------- 169 (507)
T PRK06645 108 TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-----------PPHIIFIFATTEVQ------- 169 (507)
T ss_pred CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-----------CCCEEEEEEeCChH-------
Confidence 222223334443332 34579999999999999999999999962 23556777775422
Q ss_pred cCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCC
Q 047225 149 ILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNP 228 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~ 228 (287)
.+.+.+.+|+ ..+.|.+++.+++.+++...+.+. .+.+++++++.|+..+.
T Consensus 170 -----------------kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~e---------gi~ie~eAL~~Ia~~s~-- 220 (507)
T PRK06645 170 -----------------KIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQE---------NLKTDIEALRIIAYKSE-- 220 (507)
T ss_pred -----------------HhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC--
Confidence 2356889999 899999999999999998887642 46789999999998643
Q ss_pred CCCchhHHHHHHHHH
Q 047225 229 SYGARPLRRAIGRLL 243 (287)
Q Consensus 229 ~~~~r~l~~~i~~~~ 243 (287)
.++|.+.+.+++++
T Consensus 221 -GslR~al~~Ldkai 234 (507)
T PRK06645 221 -GSARDAVSILDQAA 234 (507)
T ss_pred -CCHHHHHHHHHHHH
Confidence 34556555555443
No 114
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.60 E-value=4.2e-14 Score=129.71 Aligned_cols=169 Identities=20% Similarity=0.239 Sum_probs=107.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccc--------hhhhhCCC------CCCCcccchhhHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT--------VSKFFGSP------PGYVGFENGGQLTE 83 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~------~~~~~~~~~~~~~~ 83 (287)
.+++|.||||||||++++.++..+....... .+.......... ...-|-.+ ....|.. ...-..
T Consensus 212 ~~vlliG~pGsGKTtlar~l~~llp~~~~~~-~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg-~~~~pG 289 (499)
T TIGR00368 212 HNLLLFGPPGSGKTMLASRLQGILPPLTNEE-AIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGG-PIPLPG 289 (499)
T ss_pred CEEEEEecCCCCHHHHHHHHhcccCCCCCcE-EEeccccccchhhhccccccccCCccccccccchhhhhCCc-cccchh
Confidence 4799999999999999999998774432221 122221111000 00000000 0000100 001233
Q ss_pred HHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCC-Cceeec-cceEEEEeecCCchhhhhhccCCchHHHHHHHH
Q 047225 84 AVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGVAE 161 (287)
Q Consensus 84 ~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~ 161 (287)
.+...++++|||||++.+++.+++.|++.|+++.+.... |..+.+ .++.+|+++|+.+++........+...+.++..
T Consensus 290 ~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~ 369 (499)
T TIGR00368 290 EISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISR 369 (499)
T ss_pred hhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHH
Confidence 455667789999999999999999999999999876443 433444 589999999997655432211224445666666
Q ss_pred HHHhcCChhHHhccCceEEeCCCCHHHH
Q 047225 162 ELRRRFRPEFLNRIDEVIVFRQLNKMQL 189 (287)
Q Consensus 162 ~~~~~~~~~l~~r~~~~i~~~~~~~~~~ 189 (287)
++. +++.+|++|||..+.+++++.+++
T Consensus 370 y~~-~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 370 YWN-KLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred Hhh-hccHhHHhhCCEEEEEcCCCHHHH
Confidence 654 688999999999999999987655
No 115
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.6e-14 Score=117.79 Aligned_cols=137 Identities=31% Similarity=0.498 Sum_probs=102.4
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEE
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILF 95 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 95 (287)
|. .++++||||||||.+++++|+.. ...++.+..+++... .+|..+.- .+.++...++...+|+||
T Consensus 189 pr-gvllygppg~gktml~kava~~t---~a~firvvgsefvqk-----ylgegprm-----vrdvfrlakenapsiifi 254 (408)
T KOG0727|consen 189 PR-GVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQK-----YLGEGPRM-----VRDVFRLAKENAPSIIFI 254 (408)
T ss_pred Cc-ceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHHHH-----HhccCcHH-----HHHHHHHHhccCCcEEEe
Confidence 44 49999999999999999999987 677888888877643 34432221 256777778877899999
Q ss_pred cCccc-----------ccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 96 DEIEK-----------AHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 96 Deid~-----------~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
||+|. ++.++|..|.+++..-.-... ..|+.+|+++|...
T Consensus 255 deidaiatkrfdaqtgadrevqril~ellnqmdgfdq------~~nvkvimatnrad----------------------- 305 (408)
T KOG0727|consen 255 DEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ------TTNVKVIMATNRAD----------------------- 305 (408)
T ss_pred ehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc------ccceEEEEecCccc-----------------------
Confidence 99993 466899999998875321110 13678999999854
Q ss_pred hcCChhHH--hccCceEEeCCCCHHHHHHHHHHH
Q 047225 165 RRFRPEFL--NRIDEVIVFRQLNKMQLMEIVDIM 196 (287)
Q Consensus 165 ~~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~ 196 (287)
.+.|+|+ .|+|..|.||-+++.+.+-++...
T Consensus 306 -tldpallrpgrldrkiefplpdrrqkrlvf~ti 338 (408)
T KOG0727|consen 306 -TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTI 338 (408)
T ss_pred -ccCHhhcCCccccccccCCCCchhhhhhhHHhh
Confidence 3467777 799999999999988876666444
No 116
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.60 E-value=1.9e-14 Score=125.85 Aligned_cols=142 Identities=13% Similarity=0.152 Sum_probs=95.5
Q ss_pred hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecC-CCceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 87 HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG-KGQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 87 ~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~-~g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
..+.++||+||++++++..|..|++.|+++..... .|.....+ .+++|.|.|+..
T Consensus 142 ~A~~GiL~lDEInrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e----------------------- 198 (350)
T CHL00081 142 KANRGILYVDEVNLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE----------------------- 198 (350)
T ss_pred ecCCCEEEecChHhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc-----------------------
Confidence 44568999999999999999999999998765543 36555554 677778788742
Q ss_pred hcCChhHHhccCceEEeCCCC-HHHHHHHHHHHHHH--------------------HHHHHHhcCcEEEeChhHHHHHHH
Q 047225 165 RRFRPEFLNRIDEVIVFRQLN-KMQLMEIVDIMLKE--------------------IYERLEAKNMELTVTHTFKKKLIE 223 (287)
Q Consensus 165 ~~~~~~l~~r~~~~i~~~~~~-~~~~~~il~~~l~~--------------------~~~~~~~~~~~~~i~~~~~~~l~~ 223 (287)
+.|+++|++||...+.+.+++ .++..+|+...... ....++..-..+.+++++++++++
T Consensus 199 g~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~ 278 (350)
T CHL00081 199 GELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQ 278 (350)
T ss_pred CCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 257899999999899999998 57777888664321 001111112257899999999988
Q ss_pred hccCCC-CCchhHHHHHHHHHHHHHHHHHHhcc
Q 047225 224 EGYNPS-YGARPLRRAIGRLLEDNLAEIILTGY 255 (287)
Q Consensus 224 ~~~~~~-~~~r~l~~~i~~~~~~~~~~~~~~~~ 255 (287)
...... .|.|.-.. ++..+.+.+.+.+.
T Consensus 279 l~~~~~~~s~Ra~i~----l~raArA~Aal~GR 307 (350)
T CHL00081 279 ICSELDVDGLRGDIV----TNRAAKALAAFEGR 307 (350)
T ss_pred HHHHHCCCCChHHHH----HHHHHHHHHHHcCC
Confidence 643322 23333332 44445555555544
No 117
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.60 E-value=5e-15 Score=119.25 Aligned_cols=174 Identities=21% Similarity=0.319 Sum_probs=120.6
Q ss_pred chhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC--CceEEecccccccccchhhhhCCCCCCCcccchh
Q 047225 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK--EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGG 79 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (287)
+++++.....+.+-| |++|.|||||||||.+.+||+.+.++. .-+...|.|+...-..+..-+ .
T Consensus 35 tv~rl~via~~gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I------------K 100 (333)
T KOG0991|consen 35 TVERLSVIAKEGNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI------------K 100 (333)
T ss_pred HHHHHHHHHHcCCCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH------------H
Confidence 366677777777766 799999999999999999999996533 233344444432211111100 1
Q ss_pred hHH-HHHHh--CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHH
Q 047225 80 QLT-EAVRH--RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQME 156 (287)
Q Consensus 80 ~~~-~~~~~--~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~ 156 (287)
.+. ..+.. +.+.|+++||+|-+....|.+|++.|+-.. +.+.|.++||...+.+
T Consensus 101 ~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS-----------~ttRFalaCN~s~KIi------------ 157 (333)
T KOG0991|consen 101 MFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYS-----------NTTRFALACNQSEKII------------ 157 (333)
T ss_pred HHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHc-----------ccchhhhhhcchhhhh------------
Confidence 111 11112 556899999999999999999999999532 3457999999876544
Q ss_pred HHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHH
Q 047225 157 RGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLR 236 (287)
Q Consensus 157 ~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~ 236 (287)
+++.+|| ..+.|..++..++..-+...... .++..+++.++.+.-.+. .+.|
T Consensus 158 ------------EPIQSRC-AiLRysklsd~qiL~Rl~~v~k~---------Ekv~yt~dgLeaiifta~------GDMR 209 (333)
T KOG0991|consen 158 ------------EPIQSRC-AILRYSKLSDQQILKRLLEVAKA---------EKVNYTDDGLEAIIFTAQ------GDMR 209 (333)
T ss_pred ------------hhHHhhh-HhhhhcccCHHHHHHHHHHHHHH---------hCCCCCcchHHHhhhhcc------chHH
Confidence 6788999 88999999887765555443332 157889999998876654 5777
Q ss_pred HHHH
Q 047225 237 RAIG 240 (287)
Q Consensus 237 ~~i~ 240 (287)
++++
T Consensus 210 QalN 213 (333)
T KOG0991|consen 210 QALN 213 (333)
T ss_pred HHHH
Confidence 8777
No 118
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.60 E-value=2.3e-14 Score=133.88 Aligned_cols=190 Identities=16% Similarity=0.207 Sum_probs=118.9
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc-----cccchhhhhC-CCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM-----EKHTVSKFFG-SPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~ 77 (287)
+.++..+....-+ +.++|+||+|+|||++++.+++.+.-... .....|.... ......+++. ......+.+.
T Consensus 26 ~~L~~ai~~~rl~-Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~ 103 (709)
T PRK08691 26 KALQNALDEGRLH-HAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDN 103 (709)
T ss_pred HHHHHHHHcCCCC-eEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCCCcccHHHHHHhccCccceEEEeccccCCHHH
Confidence 3445555543323 35899999999999999999998843211 1011111100 0000000000 0011122222
Q ss_pred hhhHHHHHH----hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVR----HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~----~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+. .+.+.|+||||+|+++...++.|++.+++.. ..+.||++++...
T Consensus 104 IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp-----------~~v~fILaTtd~~------------ 160 (709)
T PRK08691 104 IREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPP-----------EHVKFILATTDPH------------ 160 (709)
T ss_pred HHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCC-----------CCcEEEEEeCCcc------------
Confidence 223333221 1445799999999999999999999999631 2456777776432
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCch
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r 233 (287)
.+.+.+++|| ..+.|++++.+++.+++...+... .+.++++++..|+..+. .++|
T Consensus 161 ------------kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kE---------gi~id~eAL~~Ia~~A~---GslR 215 (709)
T PRK08691 161 ------------KVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSE---------KIAYEPPALQLLGRAAA---GSMR 215 (709)
T ss_pred ------------ccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHc---------CCCcCHHHHHHHHHHhC---CCHH
Confidence 2356788999 899999999999999998776542 46789999999998753 4556
Q ss_pred hHHHHHHHHH
Q 047225 234 PLRRAIGRLL 243 (287)
Q Consensus 234 ~l~~~i~~~~ 243 (287)
.+...+++++
T Consensus 216 dAlnLLDqai 225 (709)
T PRK08691 216 DALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHH
Confidence 6655555443
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=3.5e-14 Score=136.93 Aligned_cols=189 Identities=17% Similarity=0.209 Sum_probs=118.2
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC----CceEEe-cccccccc----cchhhhhCCCCCCCc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK----EAMVRI-DMSEYMEK----HTVSKFFGSPPGYVG 74 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~ 74 (287)
+.++..+... +..+.++|+||+|||||++++.|++.+.-.. .++-.+ +|..+... ..+..+ ......+
T Consensus 25 ~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ei--daas~~~ 101 (824)
T PRK07764 25 EPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEI--DAASHGG 101 (824)
T ss_pred HHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEe--cccccCC
Confidence 3444444443 3333489999999999999999999983211 111111 01111000 000001 0011112
Q ss_pred ccchhhHHHHHH----hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccC
Q 047225 75 FENGGQLTEAVR----HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESIL 150 (287)
Q Consensus 75 ~~~~~~~~~~~~----~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~ 150 (287)
.+..+.+.+.+. ...+.|+||||+|+++...++.|+++|++. ...++||++++...+
T Consensus 102 Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEp-----------P~~~~fIl~tt~~~k-------- 162 (824)
T PRK07764 102 VDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEP-----------PEHLKFIFATTEPDK-------- 162 (824)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCC-----------CCCeEEEEEeCChhh--------
Confidence 222233332222 245689999999999999999999999973 135577777754322
Q ss_pred CchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCC
Q 047225 151 GSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSY 230 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 230 (287)
+.+.+.+|+ ..+.|.+++.+++.+++...+.+. .+.++++++.+++.... .
T Consensus 163 ----------------Ll~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~E---------Gv~id~eal~lLa~~sg---G 213 (824)
T PRK07764 163 ----------------VIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQE---------GVPVEPGVLPLVIRAGG---G 213 (824)
T ss_pred ----------------hhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---C
Confidence 346789999 999999999999999997776542 46789999999888653 3
Q ss_pred CchhHHHHHHHHH
Q 047225 231 GARPLRRAIGRLL 243 (287)
Q Consensus 231 ~~r~l~~~i~~~~ 243 (287)
++|.+...+++++
T Consensus 214 dlR~Al~eLEKLi 226 (824)
T PRK07764 214 SVRDSLSVLDQLL 226 (824)
T ss_pred CHHHHHHHHHHHH
Confidence 4566666666554
No 120
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=2.7e-14 Score=129.75 Aligned_cols=176 Identities=16% Similarity=0.246 Sum_probs=119.5
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
.+.++++|+||+|+|||+|++++++.+...+..+++++...+.... ...+.. .....+...+... .+|+
T Consensus 139 ~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~--~~~l~~-------~~~~~f~~~~~~~--dvLi 207 (445)
T PRK12422 139 FPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHL--VSAIRS-------GEMQRFRQFYRNV--DALF 207 (445)
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHH--HHHHhc-------chHHHHHHHcccC--CEEE
Confidence 4456799999999999999999999886556777788776544221 111110 0112233333333 5999
Q ss_pred EcCccccc--HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHH
Q 047225 95 FDEIEKAH--RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFL 172 (287)
Q Consensus 95 iDeid~~~--~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (287)
|||++.+. ...+..|+.+++.... .+..+|+|++..+..+. .+.+.+.
T Consensus 208 IDDiq~l~~k~~~qeelf~l~N~l~~----------~~k~IIlts~~~p~~l~--------------------~l~~rL~ 257 (445)
T PRK12422 208 IEDIEVFSGKGATQEEFFHTFNSLHT----------EGKLIVISSTCAPQDLK--------------------AMEERLI 257 (445)
T ss_pred EcchhhhcCChhhHHHHHHHHHHHHH----------CCCcEEEecCCCHHHHh--------------------hhHHHHH
Confidence 99999874 3456677776653210 11257788876544331 2457889
Q ss_pred hccC--ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 173 NRID--EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 173 ~r~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
+||. ..+.+.||+.+++..|++..+... .+.++++++++++... . .++|.+..++++++
T Consensus 258 SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~---------~~~l~~evl~~la~~~-~--~dir~L~g~l~~l~ 318 (445)
T PRK12422 258 SRFEWGIAIPLHPLTKEGLRSFLERKAEAL---------SIRIEETALDFLIEAL-S--SNVKSLLHALTLLA 318 (445)
T ss_pred hhhcCCeEEecCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhc-C--CCHHHHHHHHHHHH
Confidence 9994 679999999999999997766541 4689999999999863 2 36688888888774
No 121
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.59 E-value=6.7e-15 Score=129.62 Aligned_cols=145 Identities=31% Similarity=0.327 Sum_probs=102.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-----C--cccchhhHHHHHHhCCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-----V--GFENGGQLTEAVRHRPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~ 91 (287)
+++|.||||||||++++.+|+.+ +.+++.++|...... .+++|...-. . -....+.++.... .
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~l~p---~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ 114 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPDLLP---SDLLGTYAYAALLLEPGEFRFVPGPLFAAVR----V 114 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCCCCH---HHhcCchhHhhhhccCCeEEEecCCcccccc----e
Confidence 69999999999999999999999 689999999765544 3333322110 0 0001123333222 5
Q ss_pred EEEEcCcccccHHHHHHHHHhhcCceeecCCCce-eecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 92 VILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQT-VDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 92 il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~-i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
++++|||++.++.+++.|+.+|+++.++... .. +.++ .+++|+|+|+..... .+.+++
T Consensus 115 ill~DEInra~p~~q~aLl~~l~e~~vtv~~-~~~~~~~~~f~viaT~Np~e~~g-------------------~~~l~e 174 (329)
T COG0714 115 ILLLDEINRAPPEVQNALLEALEERQVTVPG-LTTIRLPPPFIVIATQNPGEYEG-------------------TYPLPE 174 (329)
T ss_pred EEEEeccccCCHHHHHHHHHHHhCcEEEECC-cCCcCCCCCCEEEEccCccccCC-------------------CcCCCH
Confidence 9999999999999999999999998888754 22 5555 577888889754332 224688
Q ss_pred hHHhccCceEEeCCCC-HHHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLN-KMQLMEIV 193 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~-~~~~~~il 193 (287)
++++||...+.+++|. ..+...+.
T Consensus 175 A~ldRf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 175 ALLDRFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred HHHhhEEEEEecCCCCchHHHHHHH
Confidence 9999998889999994 44433333
No 122
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4e-15 Score=131.70 Aligned_cols=163 Identities=19% Similarity=0.300 Sum_probs=114.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCC-CceEEec------cc-----------cccc---ccchhhhhCCCCCCCccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSK-EAMVRID------MS-----------EYME---KHTVSKFFGSPPGYVGFE 76 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~-~~~~~~~------~~-----------~~~~---~~~~~~~~~~~~~~~~~~ 76 (287)
.|++|+||||||||.+++.+...+++-. ..++.++ .. .+.. ..+...++|..
T Consensus 199 HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG------- 271 (490)
T COG0606 199 HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGG------- 271 (490)
T ss_pred CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCCccCCCccchHHHHhCCC-------
Confidence 5799999999999999999988874321 1111111 00 0000 01112233221
Q ss_pred chhhHHHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCC-Cceeecc-ceEEEEeecCCchhhhhhccCCchH
Q 047225 77 NGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDLK-NTIIIMTSNIGDSVIARESILGSDQ 154 (287)
Q Consensus 77 ~~~~~~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~ 154 (287)
...-...++..+++|||+||+-.....+++.|++.+|+|+..++. +..+.++ ++++|+++|+++++..+....-...
T Consensus 272 -~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c 350 (490)
T COG0606 272 -GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPC 350 (490)
T ss_pred -CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCC
Confidence 122334556667899999999999999999999999999988875 6667775 8999999999988876664444445
Q ss_pred HHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHH
Q 047225 155 MERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQL 189 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~ 189 (287)
.+.+..+++. +++..|++|+|..+.++.++..++
T Consensus 351 ~~~~~~~Y~~-klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 351 SPRQIKRYLN-KLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred CHHHHHHHHH-HhhHHHHhhhhheecccCCCHHHh
Confidence 5666666654 577899999999999999885544
No 123
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.59 E-value=3.1e-14 Score=133.72 Aligned_cols=191 Identities=19% Similarity=0.196 Sum_probs=124.4
Q ss_pred cCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhh--HHHHHH
Q 047225 9 GIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQ--LTEAVR 86 (287)
Q Consensus 9 ~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 86 (287)
.+-+|. +++++|.|+||||||++++.+++.+.. ..+++.+++... ...++|...-......... -...+.
T Consensus 10 ~av~p~--~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~t-----~d~L~G~idl~~~~~~g~~~~~~G~L~ 81 (589)
T TIGR02031 10 LAVDPS--LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGVT-----EDRLIGGIDVEESLAGGQRVTQPGLLD 81 (589)
T ss_pred hccCCC--cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCcccc-----hhhcccchhhhhhhhcCcccCCCCCee
Confidence 344554 678999999999999999999998743 345776664211 1233332100000000000 011233
Q ss_pred hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecC-CCceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 87 HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG-KGQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 87 ~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~-~g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
..+.++||+||++++++.+++.|+++|+++.++.. .|.....+ ++++|+|+|+... +
T Consensus 82 ~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~---------------------~ 140 (589)
T TIGR02031 82 EAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG---------------------G 140 (589)
T ss_pred eCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc---------------------c
Confidence 34557999999999999999999999999986654 36555554 7899999998631 1
Q ss_pred hcCChhHHhccCceEEeCCCC-HHHHHHHHHHHHHHH--------------HHHHHhcCcEEEeChhHHHHHHHhccCC
Q 047225 165 RRFRPEFLNRIDEVIVFRQLN-KMQLMEIVDIMLKEI--------------YERLEAKNMELTVTHTFKKKLIEEGYNP 228 (287)
Q Consensus 165 ~~~~~~l~~r~~~~i~~~~~~-~~~~~~il~~~l~~~--------------~~~~~~~~~~~~i~~~~~~~l~~~~~~~ 228 (287)
..|+++|++||+..+.+.++. .++..+|+...+..+ ....+..-..+.++++++++++......
T Consensus 141 g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~ 219 (589)
T TIGR02031 141 GGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASL 219 (589)
T ss_pred CCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHc
Confidence 367899999998877776554 555677776654221 1122222235789999999999875543
No 124
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.58 E-value=2.5e-14 Score=130.14 Aligned_cols=187 Identities=17% Similarity=0.217 Sum_probs=119.6
Q ss_pred hhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcC--CCCceEEecccccccccchhhhhCCCCCCCcccchhhHH
Q 047225 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFG--SKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLT 82 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
.++..+.+|++ .++++|+||+|+|||+|++++++.+.. .+..++++++.++.... ...+.. .....+.
T Consensus 119 ~~~~~~~~~~~-~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~--~~~~~~-------~~~~~f~ 188 (440)
T PRK14088 119 AALEVAKNPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL--VDSMKE-------GKLNEFR 188 (440)
T ss_pred HHHHHHhCcCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH--HHHHhc-------ccHHHHH
Confidence 44444455655 346999999999999999999998743 24567788876654321 011100 0112344
Q ss_pred HHHHhCCcEEEEEcCccccc--HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHH
Q 047225 83 EAVRHRPHSVILFDEIEKAH--RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVA 160 (287)
Q Consensus 83 ~~~~~~~~~il~iDeid~~~--~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
+.+.. ...+|+|||++.+. ...+..|+.+++.... .+..+|++++..+..+.
T Consensus 189 ~~~~~-~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~----------~~k~iIitsd~~p~~l~--------------- 242 (440)
T PRK14088 189 EKYRK-KVDVLLIDDVQFLIGKTGVQTELFHTFNELHD----------SGKQIVICSDREPQKLS--------------- 242 (440)
T ss_pred HHHHh-cCCEEEEechhhhcCcHHHHHHHHHHHHHHHH----------cCCeEEEECCCCHHHHH---------------
Confidence 43332 23599999999663 3345556555543110 01246777765443321
Q ss_pred HHHHhcCChhHHhccC--ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHH
Q 047225 161 EELRRRFRPEFLNRID--EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRA 238 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~ 238 (287)
.+.+.+.+||. ..+.+.||+.+++..|++..+... .+.++++++++|+.... .++|.+..+
T Consensus 243 -----~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~---------~~~l~~ev~~~Ia~~~~---~~~R~L~g~ 305 (440)
T PRK14088 243 -----EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE---------HGELPEEVLNFVAENVD---DNLRRLRGA 305 (440)
T ss_pred -----HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHhccc---cCHHHHHHH
Confidence 23467888883 468999999999999997665421 46799999999998742 367889888
Q ss_pred HHHHHH
Q 047225 239 IGRLLE 244 (287)
Q Consensus 239 i~~~~~ 244 (287)
+.++..
T Consensus 306 l~~l~~ 311 (440)
T PRK14088 306 IIKLLV 311 (440)
T ss_pred HHHHHH
Confidence 887754
No 125
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.58 E-value=4.7e-14 Score=128.95 Aligned_cols=137 Identities=26% Similarity=0.383 Sum_probs=87.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCC-----CceEEecccccccccchhhhhCCCCCCCcccc--hhhHHHHHHh----
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSK-----EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFEN--GGQLTEAVRH---- 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---- 87 (287)
.++|+||||||||++++++++.+.... .....+++.. ..++.. +.|..+ ...+++.+..
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~-------~eLl~k---yvGete~~ir~iF~~Ar~~a~~ 287 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG-------PELLNK---YVGETERQIRLIFQRAREKASD 287 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc-------hhhccc---ccchHHHHHHHHHHHHHHHhhc
Confidence 599999999999999999999984321 1122222211 001111 111111 1233443332
Q ss_pred CCcEEEEEcCcccccH------------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHH
Q 047225 88 RPHSVILFDEIEKAHR------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQM 155 (287)
Q Consensus 88 ~~~~il~iDeid~~~~------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~ 155 (287)
+...|+||||+|.+-. .+.+.|+..++.- ...++.++|+|||...
T Consensus 288 g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl---------~~~~~ViVI~ATN~~d-------------- 344 (512)
T TIGR03689 288 GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV---------ESLDNVIVIGASNRED-------------- 344 (512)
T ss_pred CCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc---------ccCCceEEEeccCChh--------------
Confidence 3458999999996521 2334555555431 0123678999999753
Q ss_pred HHHHHHHHHhcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHH
Q 047225 156 ERGVAEELRRRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLK 198 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~ 198 (287)
.+++++++ ||+..|.|++|+.++..+|++.++.
T Consensus 345 ----------~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 345 ----------MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ----------hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 45789987 9999999999999999999988874
No 126
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.58 E-value=2.6e-14 Score=108.85 Aligned_cols=118 Identities=32% Similarity=0.451 Sum_probs=83.2
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCC-cEEEEEcCc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRP-HSVILFDEI 98 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~iDei 98 (287)
++|+||||||||++++.+++.+ +.+++.++++......... .......++..+.... .++++|||+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISSYAGD----------SEQKIRDFFKKAKKSAKPCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTSSTTH----------HHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccccccc----------cccccccccccccccccceeeeeccc
Confidence 6899999999999999999999 6888999998766321000 0001123444444444 699999999
Q ss_pred ccccHHH-----------HHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKAHRDV-----------LNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~~~~~-----------~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+.... ++.|...+++..-. ..++++|+++|... .+
T Consensus 68 d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------~~~~~vI~ttn~~~------------------------~i 115 (132)
T PF00004_consen 68 DKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------NSRVIVIATTNSPD------------------------KI 115 (132)
T ss_dssp GGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT--------SSSEEEEEEESSGG------------------------GS
T ss_pred hhcccccccccccccccccceeeecccccccc--------cccceeEEeeCChh------------------------hC
Confidence 9876654 77888888763211 13578999998732 45
Q ss_pred ChhHH-hccCceEEeC
Q 047225 168 RPEFL-NRIDEVIVFR 182 (287)
Q Consensus 168 ~~~l~-~r~~~~i~~~ 182 (287)
.+++. +||+..+.+|
T Consensus 116 ~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 116 DPALLRSRFDRRIEFP 131 (132)
T ss_dssp CHHHHSTTSEEEEEE-
T ss_pred CHhHHhCCCcEEEEcC
Confidence 78999 9998888876
No 127
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=5e-14 Score=131.63 Aligned_cols=187 Identities=16% Similarity=0.174 Sum_probs=116.0
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC---------ceEEe-cccccccccchhhhhC-CCCCC
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE---------AMVRI-DMSEYMEKHTVSKFFG-SPPGY 72 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~---------~~~~~-~~~~~~~~~~~~~~~~-~~~~~ 72 (287)
+.+++.+....-+ +.++|+||+|+|||++++.+++.+.-.+. ++-.+ +|..+... .-.+++. .....
T Consensus 26 ~~L~~~l~~~rl~-ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g-~h~D~~eldaas~ 103 (618)
T PRK14951 26 QALTNALTQQRLH-HAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG-RFVDYTELDAASN 103 (618)
T ss_pred HHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC-CCCceeecCcccc
Confidence 4455555543333 34799999999999999999999842110 11000 11111100 0001110 11111
Q ss_pred CcccchhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhc
Q 047225 73 VGFENGGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARES 148 (287)
Q Consensus 73 ~~~~~~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~ 148 (287)
.+.+..+.+.+.+.. +++.|++|||+|.++...++.|++.+++.. ..+.||++|+...
T Consensus 104 ~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP-----------~~~~fIL~Ttd~~------- 165 (618)
T PRK14951 104 RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPP-----------EYLKFVLATTDPQ------- 165 (618)
T ss_pred cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCC-----------CCeEEEEEECCch-------
Confidence 222222333333332 346799999999999999999999999731 2456777765432
Q ss_pred cCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCC
Q 047225 149 ILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNP 228 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~ 228 (287)
.+.+.+++|+ ..+.|.+++.+++.+++...+.+. ++.++++++.+|+..+.
T Consensus 166 -----------------kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~e---------gi~ie~~AL~~La~~s~-- 216 (618)
T PRK14951 166 -----------------KVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAE---------NVPAEPQALRLLARAAR-- 216 (618)
T ss_pred -----------------hhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC--
Confidence 2246799999 999999999999999997776542 46789999999998653
Q ss_pred CCCchhHHHHHH
Q 047225 229 SYGARPLRRAIG 240 (287)
Q Consensus 229 ~~~~r~l~~~i~ 240 (287)
.++|.+...++
T Consensus 217 -GslR~al~lLd 227 (618)
T PRK14951 217 -GSMRDALSLTD 227 (618)
T ss_pred -CCHHHHHHHHH
Confidence 34455544444
No 128
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=7.1e-14 Score=129.79 Aligned_cols=177 Identities=27% Similarity=0.366 Sum_probs=123.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||++|+++|..+ +.+++.++.+++.... +|... .....++..+.....+|+||||+
T Consensus 278 giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~sk~-----vGese-----k~ir~~F~~A~~~~p~iiFiDEi 344 (494)
T COG0464 278 GVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLSKW-----VGESE-----KNIRELFEKARKLAPSIIFIDEI 344 (494)
T ss_pred eeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhccc-----cchHH-----HHHHHHHHHHHcCCCcEEEEEch
Confidence 59999999999999999999987 7888888887665431 11100 01235566666556689999999
Q ss_pred cccc-----------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKAH-----------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~~-----------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+- ..+...|+..++.-.- ..++++|.+||.+. .+
T Consensus 345 Ds~~~~r~~~~~~~~~r~~~~lL~~~d~~e~---------~~~v~vi~aTN~p~------------------------~l 391 (494)
T COG0464 345 DSLASGRGPSEDGSGRRVVGQLLTELDGIEK---------AEGVLVIAATNRPD------------------------DL 391 (494)
T ss_pred hhhhccCCCCCchHHHHHHHHHHHHhcCCCc---------cCceEEEecCCCcc------------------------cc
Confidence 9652 2456666666653110 12467899999864 35
Q ss_pred ChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 168 RPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 168 ~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
++++++ ||+..+.+++|+.++..+|++..+..... ....+-..+.++.. ..+++..++...+.++.+.
T Consensus 392 d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~--------~~~~~~~~~~l~~~--t~~~sgadi~~i~~ea~~~ 461 (494)
T COG0464 392 DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP--------PLAEDVDLEELAEI--TEGYSGADIAALVREAALE 461 (494)
T ss_pred CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC--------cchhhhhHHHHHHH--hcCCCHHHHHHHHHHHHHH
Confidence 688888 99999999999999999999888764211 11233444444442 2335668999999999888
Q ss_pred HHHHHH
Q 047225 246 NLAEII 251 (287)
Q Consensus 246 ~~~~~~ 251 (287)
++.+..
T Consensus 462 ~~~~~~ 467 (494)
T COG0464 462 ALREAR 467 (494)
T ss_pred HHHHhc
Confidence 876653
No 129
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=7.1e-14 Score=128.64 Aligned_cols=186 Identities=19% Similarity=0.245 Sum_probs=114.0
Q ss_pred hhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC---ceEEe-ccccccccc--chhhhhCCCCCCCcccch
Q 047225 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE---AMVRI-DMSEYMEKH--TVSKFFGSPPGYVGFENG 78 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~---~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 78 (287)
.++..+....-| +.++|+||||||||++++++++.+.-.+. .+..+ .|....... .+..+- .....+....
T Consensus 25 ~L~~~i~~~~l~-ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~--~~~~~~vd~i 101 (504)
T PRK14963 25 VLLAALRQGRLG-HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEID--AASNNSVEDV 101 (504)
T ss_pred HHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEec--ccccCCHHHH
Confidence 344444443322 34699999999999999999999842111 11000 011000000 000000 0111122222
Q ss_pred hhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchH
Q 047225 79 GQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQ 154 (287)
Q Consensus 79 ~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~ 154 (287)
+.+.+.+.. +.+.+++|||+|.++...++.|++.+++.. ..+++|++++...
T Consensus 102 R~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~-----------~~t~~Il~t~~~~------------- 157 (504)
T PRK14963 102 RDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPP-----------EHVIFILATTEPE------------- 157 (504)
T ss_pred HHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCC-----------CCEEEEEEcCChh-------------
Confidence 333333332 345799999999999999999999998731 2446777775432
Q ss_pred HHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchh
Q 047225 155 MERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARP 234 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~ 234 (287)
.+.+.+.+|+ ..+.|.|++.+++.+++...+.+. .+.++++++++++..+- .++|.
T Consensus 158 -----------kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~e---------gi~i~~~Al~~ia~~s~---GdlR~ 213 (504)
T PRK14963 158 -----------KMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAE---------GREAEPEALQLVARLAD---GAMRD 213 (504)
T ss_pred -----------hCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHHH
Confidence 3457888999 899999999999999997777542 45789999999998753 23344
Q ss_pred HHHHHHH
Q 047225 235 LRRAIGR 241 (287)
Q Consensus 235 l~~~i~~ 241 (287)
+...+++
T Consensus 214 aln~Lek 220 (504)
T PRK14963 214 AESLLER 220 (504)
T ss_pred HHHHHHH
Confidence 4444443
No 130
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.57 E-value=4.3e-14 Score=133.31 Aligned_cols=186 Identities=18% Similarity=0.235 Sum_probs=119.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcC-------CCCceEEecccccccccch-----hhhhCCCCCCCcccch---hhHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFG-------SKEAMVRIDMSEYMEKHTV-----SKFFGSPPGYVGFENG---GQLT 82 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~-------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~ 82 (287)
+.++++|+||||||.+++.+.+.+.. ....++++||........+ ..+++..+. .|.... ..++
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~-~GlsS~evLerLF 860 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPP-NALNSFKILDRLF 860 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCC-ccccHHHHHHHHH
Confidence 34679999999999999999887721 1256789999765544322 123333222 222211 1223
Q ss_pred HHHHh--CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHH
Q 047225 83 EAVRH--RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVA 160 (287)
Q Consensus 83 ~~~~~--~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
..+.. ....||+|||+|.+....+..|+.+++..... + ..+.+|+++|.-...
T Consensus 861 ~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s---~-----SKLiLIGISNdlDLp----------------- 915 (1164)
T PTZ00112 861 NQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKI---N-----SKLVLIAISNTMDLP----------------- 915 (1164)
T ss_pred hhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhcc---C-----CeEEEEEecCchhcc-----------------
Confidence 33211 22359999999999877778888888753211 1 245688888753211
Q ss_pred HHHHhcCChhHHhccCce-EEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHH
Q 047225 161 EELRRRFRPEFLNRIDEV-IVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~~~-i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
..+.+.+.+|+... +.|+|++.+++.+|+...+... ...++++++++++....... .++|+++
T Consensus 916 ----erLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A---------~gVLdDdAIELIArkVAq~S---GDARKAL 979 (1164)
T PTZ00112 916 ----ERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC---------KEIIDHTAIQLCARKVANVS---GDIRKAL 979 (1164)
T ss_pred ----hhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC---------CCCCCHHHHHHHHHhhhhcC---CHHHHHH
Confidence 13456788888643 9999999999999998777542 23589999999998654333 4666666
Q ss_pred HHHHHHH
Q 047225 240 GRLLEDN 246 (287)
Q Consensus 240 ~~~~~~~ 246 (287)
+ ++..+
T Consensus 980 D-ILRrA 985 (1164)
T PTZ00112 980 Q-ICRKA 985 (1164)
T ss_pred H-HHHHH
Confidence 5 44433
No 131
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=7.7e-14 Score=130.29 Aligned_cols=189 Identities=15% Similarity=0.240 Sum_probs=118.4
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC----CceEEe-cccccccccchhhhhC-CCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK----EAMVRI-DMSEYMEKHTVSKFFG-SPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~ 77 (287)
+.++..+... +..+.++|+||+|||||++|+.+++.+.-.. .++-.+ +|..+..... .+.+. ...+..+.+.
T Consensus 26 ~~L~~~i~~~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~-~dv~eidaas~~~vd~ 103 (559)
T PRK05563 26 KTLKNAIKQG-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSL-MDVIEIDAASNNGVDE 103 (559)
T ss_pred HHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCC-CCeEEeeccccCCHHH
Confidence 3444554443 3334589999999999999999999884221 111111 1111110000 00000 0011122222
Q ss_pred hhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+.. +++.|++|||++.+....++.|++.+++. ...++||++++...
T Consensus 104 ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEep-----------p~~~ifIlatt~~~------------ 160 (559)
T PRK05563 104 IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEP-----------PAHVIFILATTEPH------------ 160 (559)
T ss_pred HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCC-----------CCCeEEEEEeCChh------------
Confidence 3344444332 34679999999999999999999999873 23556777765432
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCch
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r 233 (287)
.+.+.+.+|+ ..+.|++++..++..++...+.+. ++.++++++..++..+. .++|
T Consensus 161 ------------ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~e---------gi~i~~~al~~ia~~s~---G~~R 215 (559)
T PRK05563 161 ------------KIPATILSRC-QRFDFKRISVEDIVERLKYILDKE---------GIEYEDEALRLIARAAE---GGMR 215 (559)
T ss_pred ------------hCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHH
Confidence 3467899999 889999999999999997776542 46789999999988643 3556
Q ss_pred hHHHHHHHH
Q 047225 234 PLRRAIGRL 242 (287)
Q Consensus 234 ~l~~~i~~~ 242 (287)
++...+++.
T Consensus 216 ~al~~Ldq~ 224 (559)
T PRK05563 216 DALSILDQA 224 (559)
T ss_pred HHHHHHHHH
Confidence 655555543
No 132
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.57 E-value=8.2e-14 Score=134.57 Aligned_cols=181 Identities=17% Similarity=0.219 Sum_probs=117.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC-------CCceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHHhCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS-------KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVRHRP 89 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 89 (287)
+++|+||||||||++++.++..+... +..++.++++....... +.|-. ....+++.+....
T Consensus 205 n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~----------~~g~~e~~l~~i~~~~~~~~ 274 (731)
T TIGR02639 205 NPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTK----------YRGDFEERLKAVVSEIEKEP 274 (731)
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhcc----------ccchHHHHHHHHHHHHhccC
Confidence 69999999999999999999987332 34455666544332110 11100 1123444444445
Q ss_pred cEEEEEcCccccc---------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHH
Q 047225 90 HSVILFDEIEKAH---------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVA 160 (287)
Q Consensus 90 ~~il~iDeid~~~---------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
..||||||+|.+. .+..+.|++.++.| .+.+|.+||+.. ++
T Consensus 275 ~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-------------~i~~IgaTt~~e-----------------~~ 324 (731)
T TIGR02639 275 NAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-------------KLRCIGSTTYEE-----------------YK 324 (731)
T ss_pred CeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-------------CeEEEEecCHHH-----------------HH
Confidence 6799999999663 45677888888765 345888887521 11
Q ss_pred HHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 161 EELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
.++ ..+++|.+|| ..|.+++|+.++..+|++.....+... ..+.++++++..++..+..+ .+.|.+....-
T Consensus 325 ~~~--~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~~-----~~v~i~~~al~~~~~ls~ry-i~~r~~P~kai 395 (731)
T TIGR02639 325 NHF--EKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEEF-----HHVKYSDEALEAAVELSARY-INDRFLPDKAI 395 (731)
T ss_pred HHh--hhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHhc-----cCcccCHHHHHHHHHhhhcc-cccccCCHHHH
Confidence 111 1258999999 689999999999999998877664322 24789999999999875433 22244333323
Q ss_pred HHHHHHHH
Q 047225 241 RLLEDNLA 248 (287)
Q Consensus 241 ~~~~~~~~ 248 (287)
+++..+-+
T Consensus 396 ~lld~a~a 403 (731)
T TIGR02639 396 DVIDEAGA 403 (731)
T ss_pred HHHHHhhh
Confidence 34544443
No 133
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.5e-14 Score=120.44 Aligned_cols=192 Identities=19% Similarity=0.274 Sum_probs=131.9
Q ss_pred CCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCC
Q 047225 10 IRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRP 89 (287)
Q Consensus 10 ~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (287)
.+...+|+..++|+||||||||.||+++|... +..++.+.-++.... ..|.... ....++++.++..
T Consensus 159 FtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDLvSK-----WmGESEk-----LVknLFemARe~k 225 (439)
T KOG0739|consen 159 FTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK-----WMGESEK-----LVKNLFEMARENK 225 (439)
T ss_pred hcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHHHHH-----HhccHHH-----HHHHHHHHHHhcC
Confidence 34456777789999999999999999999987 577777777765532 2221100 1246788888888
Q ss_pred cEEEEEcCcccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHH
Q 047225 90 HSVILFDEIEKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERG 158 (287)
Q Consensus 90 ~~il~iDeid~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~ 158 (287)
.+|+||||||-+ ...+-..|+--|+ |.- .+-..+.|..++|.+-
T Consensus 226 PSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq-GVG-------~d~~gvLVLgATNiPw----------------- 280 (439)
T KOG0739|consen 226 PSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-GVG-------NDNDGVLVLGATNIPW----------------- 280 (439)
T ss_pred CcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh-ccc-------cCCCceEEEecCCCch-----------------
Confidence 899999999954 1223333433343 211 1123457788888863
Q ss_pred HHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHH
Q 047225 159 VAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRA 238 (287)
Q Consensus 159 ~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~ 238 (287)
.++.++.+||...|++|-|........++..+.. ..-.+++.-...++..+. +++..++.-+
T Consensus 281 -------~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~---------tp~~LT~~d~~eL~~kTe--GySGsDisiv 342 (439)
T KOG0739|consen 281 -------VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD---------TPHVLTEQDFKELARKTE--GYSGSDISIV 342 (439)
T ss_pred -------hHHHHHHHHhhcceeccCCcHHHhhhhheeccCC---------CccccchhhHHHHHhhcC--CCCcCceEEE
Confidence 2457888999888999999988877777555432 245788888999988643 4455688888
Q ss_pred HHHHHHHHHHHHHHhccCC
Q 047225 239 IGRLLEDNLAEIILTGYIQ 257 (287)
Q Consensus 239 i~~~~~~~~~~~~~~~~~~ 257 (287)
+.++++..+.+...-..++
T Consensus 343 VrDalmePvRkvqsAthFk 361 (439)
T KOG0739|consen 343 VRDALMEPVRKVQSATHFK 361 (439)
T ss_pred ehhhhhhhHHHhhhhhhhh
Confidence 8888888887765444443
No 134
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.56 E-value=1.2e-13 Score=121.26 Aligned_cols=161 Identities=23% Similarity=0.373 Sum_probs=108.1
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC--ceEEecccccccccchhhhhCCCCCCCcccchhh
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE--AMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQ 80 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
++.++..+...+.| +++|+||+|||||++++.+++.+..... .++.+++++........ ..
T Consensus 26 ~~~l~~~i~~~~~~--~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~---------------~~ 88 (319)
T PRK00440 26 VERLKSYVKEKNMP--HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIR---------------NK 88 (319)
T ss_pred HHHHHHHHhCCCCC--eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHH---------------HH
Confidence 34555555554433 6999999999999999999999854432 23334333211110000 11
Q ss_pred HHHHHHh-----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHH
Q 047225 81 LTEAVRH-----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQM 155 (287)
Q Consensus 81 ~~~~~~~-----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~ 155 (287)
+...... .+..+++|||++.+..+.++.|+++++... +.+.+|+++|...
T Consensus 89 i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-----------~~~~lIl~~~~~~-------------- 143 (319)
T PRK00440 89 IKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-----------QNTRFILSCNYSS-------------- 143 (319)
T ss_pred HHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-----------CCCeEEEEeCCcc--------------
Confidence 1122211 234699999999999999999999988631 2346777776532
Q ss_pred HHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 156 ERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
.+.+++.+|+ ..+.|+|++.+++..++...+.+. .+.++++++++++..+
T Consensus 144 ----------~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~---------~~~i~~~al~~l~~~~ 193 (319)
T PRK00440 144 ----------KIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENE---------GIEITDDALEAIYYVS 193 (319)
T ss_pred ----------ccchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc
Confidence 2346788898 789999999999999987766532 4578999999999874
No 135
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=2e-13 Score=125.44 Aligned_cols=190 Identities=14% Similarity=0.229 Sum_probs=115.8
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC----ceEEe-cccccccccchhhhhCCCCCCCcccch
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE----AMVRI-DMSEYMEKHTVSKFFGSPPGYVGFENG 78 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (287)
+.++..+.... -.+.++|+||+|+|||++|+.+++.+..... ++..+ +|..........-+.+......+.+..
T Consensus 24 ~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas~~gId~I 102 (535)
T PRK08451 24 KTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDI 102 (535)
T ss_pred HHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEeccccccCHHHH
Confidence 34444444432 2234799999999999999999999843211 11111 111110000000000011111111111
Q ss_pred hhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchH
Q 047225 79 GQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQ 154 (287)
Q Consensus 79 ~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~ 154 (287)
..+.+.... +++.|++|||++.++.+.+++|++.+++. .+.+.||++++...
T Consensus 103 Relie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-----------p~~t~FIL~ttd~~------------- 158 (535)
T PRK08451 103 RELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-----------PSYVKFILATTDPL------------- 158 (535)
T ss_pred HHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-----------CCceEEEEEECChh-------------
Confidence 222222111 34679999999999999999999999973 13456777775431
Q ss_pred HHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchh
Q 047225 155 MERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARP 234 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~ 234 (287)
.+.+.+.+|+ ..+.|.|++.+++...+...+.+. ++.++++++..++..+. .++|.
T Consensus 159 -----------kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~E---------Gi~i~~~Al~~Ia~~s~---GdlR~ 214 (535)
T PRK08451 159 -----------KLPATILSRT-QHFRFKQIPQNSIISHLKTILEKE---------GVSYEPEALEILARSGN---GSLRD 214 (535)
T ss_pred -----------hCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CcHHH
Confidence 3457899998 899999999999999997776542 35789999999988753 34455
Q ss_pred HHHHHHHH
Q 047225 235 LRRAIGRL 242 (287)
Q Consensus 235 l~~~i~~~ 242 (287)
+...++++
T Consensus 215 alnlLdqa 222 (535)
T PRK08451 215 TLTLLDQA 222 (535)
T ss_pred HHHHHHHH
Confidence 55555443
No 136
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.55 E-value=2.2e-13 Score=132.75 Aligned_cols=184 Identities=15% Similarity=0.207 Sum_probs=114.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCC-------CceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHH-h
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSK-------EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVR-H 87 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~ 87 (287)
++++|+||||||||++++.++..+.... ..++.++++..... ..+.|-. ....+++.+. .
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag----------~~~~ge~e~~lk~ii~e~~~~ 278 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAG----------ASVKGEFENRLKSVIDEVKAS 278 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcc----------cccchHHHHHHHHHHHHHHhc
Confidence 3689999999999999999999884322 23444444432211 0111111 1123444443 3
Q ss_pred CCcEEEEEcCcccccH--------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHH
Q 047225 88 RPHSVILFDEIEKAHR--------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGV 159 (287)
Q Consensus 88 ~~~~il~iDeid~~~~--------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~ 159 (287)
....||||||++.+.. +.-+.|.+.++.| ...+|.+|++.. +
T Consensus 279 ~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-------------~l~~IgaTT~~e-----------------~ 328 (852)
T TIGR03345 279 PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-------------ELRTIAATTWAE-----------------Y 328 (852)
T ss_pred CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-------------CeEEEEecCHHH-----------------H
Confidence 4457999999997742 3334678888765 345888887631 1
Q ss_pred HHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHH
Q 047225 160 AEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 160 ~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
+.+. ..+++|.+|| ..|.+++|+.++..+|+......+... ..+.++++++..++..+..+ .+.|.+....
T Consensus 329 ~~~~--~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~-----~~v~i~d~al~~~~~ls~ry-i~~r~LPDKA 399 (852)
T TIGR03345 329 KKYF--EKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKH-----HGVLILDEAVVAAVELSHRY-IPGRQLPDKA 399 (852)
T ss_pred hhhh--hccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhc-----CCCeeCHHHHHHHHHHcccc-cccccCccHH
Confidence 1111 2368999999 799999999999999986555443322 25789999999999876443 3334443333
Q ss_pred HHHHHHHHHHH
Q 047225 240 GRLLEDNLAEI 250 (287)
Q Consensus 240 ~~~~~~~~~~~ 250 (287)
-+++..+-+..
T Consensus 400 Idlldea~a~~ 410 (852)
T TIGR03345 400 VSLLDTACARV 410 (852)
T ss_pred HHHHHHHHHHH
Confidence 33555443333
No 137
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.55 E-value=2.3e-13 Score=116.01 Aligned_cols=116 Identities=23% Similarity=0.361 Sum_probs=91.1
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
+||||||++.++-+...+|.+.++..-.+ ++|++||.+-..+.+.+...=+ -++.+
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse~aP------------Iii~AtNRG~~kiRGTd~~sPh------------GIP~D 348 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESELAP------------IIILATNRGMTKIRGTDIESPH------------GIPLD 348 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhcccCc------------EEEEEcCCceeeecccCCcCCC------------CCCHh
Confidence 89999999999999999999999974322 6999999987766554321111 36789
Q ss_pred HHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 047225 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDN 246 (287)
Q Consensus 171 l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~ 246 (287)
|++|+ .+|...|++.+++++|++...... .+.+++++++++++.... ..||.+++ ++.++
T Consensus 349 lLDRl-lII~t~py~~~EireIi~iRa~ee---------~i~l~~~Ale~L~~ig~e-----tSLRYa~q-LL~pa 408 (450)
T COG1224 349 LLDRL-LIISTRPYSREEIREIIRIRAKEE---------DIELSDDALEYLTDIGEE-----TSLRYAVQ-LLTPA 408 (450)
T ss_pred hhhhe-eEEecCCCCHHHHHHHHHHhhhhh---------ccccCHHHHHHHHhhchh-----hhHHHHHH-hccHH
Confidence 99999 999999999999999997666542 689999999999987532 46777776 44443
No 138
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=99.55 E-value=6.5e-14 Score=116.85 Aligned_cols=191 Identities=24% Similarity=0.365 Sum_probs=125.4
Q ss_pred CCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC--CceEEecccc--cccccchhhhhCCCCCCCcccchhhHHHHHHh
Q 047225 12 DPNRPISSFLFTGPTGVGKTELANALAFEYFGSK--EAMVRIDMSE--YMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH 87 (287)
Q Consensus 12 ~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (287)
+|.+|+ .+.|.|++||||+..++.||+.++..+ .+++..-... +.....+.. ...+..+++.+-++.
T Consensus 106 ~p~KPL-vLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~--------Yk~eL~~~v~~~v~~ 176 (344)
T KOG2170|consen 106 NPRKPL-VLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIED--------YKEELKNRVRGTVQA 176 (344)
T ss_pred CCCCCe-EEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHH--------HHHHHHHHHHHHHHh
Confidence 478998 799999999999999999999985543 2222111111 111111100 001113567788888
Q ss_pred CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhh----ccCC-------chHHH
Q 047225 88 RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARE----SILG-------SDQME 156 (287)
Q Consensus 88 ~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~----~~~~-------~~~~~ 156 (287)
+++++++|||+|++++++++.|..+++..... .-+++.+.++|+.+|.++..+.+- -..| ..+++
T Consensus 177 C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v----~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E 252 (344)
T KOG2170|consen 177 CQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQV----SGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFE 252 (344)
T ss_pred cCCceEEechhhhcCHhHHHHHhhhhcccccc----ccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhh
Confidence 99999999999999999999999999963222 235677899999999988666532 1122 33333
Q ss_pred HHHHHHHHh-----cCChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh
Q 047225 157 RGVAEELRR-----RFRPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE 224 (287)
Q Consensus 157 ~~~~~~~~~-----~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~ 224 (287)
..+...... .....++ .++|+.|+|.|+++.++...++-.+.+ + .+..+++.++.+++.
T Consensus 253 ~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~-------r--g~~~d~~~~erva~~ 318 (344)
T KOG2170|consen 253 PALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRK-------R--GLAPDQDFVERVANS 318 (344)
T ss_pred HHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHh-------c--ccccchHHHHHHHHh
Confidence 333221110 0111111 445777999999999999999655543 2 367888999998865
No 139
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.55 E-value=1.1e-13 Score=119.43 Aligned_cols=111 Identities=22% Similarity=0.350 Sum_probs=76.2
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
+||||||++.++.+-...|.++++..--+ ++|++||.+...+.+.+...-+ .+|.+
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs~~sP------------iiIlATNRg~~~irGt~~~sph------------GiP~D 335 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALESELSP------------IIILATNRGITKIRGTDIISPH------------GIPLD 335 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTSTT--------------EEEEEES-SEEE-BTTS-EEET------------T--HH
T ss_pred ceEEecchhhccHHHHHHHHHHhcCCCCc------------EEEEecCceeeeccCccCcCCC------------CCCcc
Confidence 89999999999999999999999974322 6999999987765443221111 36789
Q ss_pred HHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 171 l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
|++|+ .+|...|++.+++++|+...++.. .+.+++++++.+...+.. ..||.+++
T Consensus 336 lLDRl-lII~t~py~~~ei~~Il~iR~~~E---------~v~i~~~al~~L~~ig~~-----~SLRYAiq 390 (398)
T PF06068_consen 336 LLDRL-LIIRTKPYSEEEIKQILKIRAKEE---------DVEISEDALDLLTKIGVE-----TSLRYAIQ 390 (398)
T ss_dssp HHTTE-EEEEE----HHHHHHHHHHHHHHC---------T--B-HHHHHHHHHHHHH-----S-HHHHHH
T ss_pred hHhhc-EEEECCCCCHHHHHHHHHhhhhhh---------cCcCCHHHHHHHHHHhhh-----ccHHHHHH
Confidence 99999 999999999999999997776542 689999999999987542 35666666
No 140
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.55 E-value=6.4e-14 Score=122.53 Aligned_cols=143 Identities=16% Similarity=0.181 Sum_probs=94.4
Q ss_pred HhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecC-CCceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 86 RHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG-KGQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 86 ~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~-~g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
....++++|+||++++++..|..|+++|+++..... .|.....+ .+++|.++|+..
T Consensus 128 ~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e---------------------- 185 (337)
T TIGR02030 128 ARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE---------------------- 185 (337)
T ss_pred eeccCCEEEecChHhCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc----------------------
Confidence 334557999999999999999999999998864332 35555554 677777877642
Q ss_pred HhcCChhHHhccCceEEeCCCCH-HHHHHHHHHHHHH--------------------HHHHHHhcCcEEEeChhHHHHHH
Q 047225 164 RRRFRPEFLNRIDEVIVFRQLNK-MQLMEIVDIMLKE--------------------IYERLEAKNMELTVTHTFKKKLI 222 (287)
Q Consensus 164 ~~~~~~~l~~r~~~~i~~~~~~~-~~~~~il~~~l~~--------------------~~~~~~~~~~~~~i~~~~~~~l~ 222 (287)
+.|+++|++||...+.+++++. ++..+|+...... ....++..-..+.++++++++++
T Consensus 186 -g~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~ 264 (337)
T TIGR02030 186 -GELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVA 264 (337)
T ss_pred -CCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHH
Confidence 2578999999998899999986 6767777653211 00111111124789999999998
Q ss_pred HhccCCCC-CchhHHHHHHHHHHHHHHHHHHhcc
Q 047225 223 EEGYNPSY-GARPLRRAIGRLLEDNLAEIILTGY 255 (287)
Q Consensus 223 ~~~~~~~~-~~r~l~~~i~~~~~~~~~~~~~~~~ 255 (287)
+....... |.|.. ..++..+.+.+.++++
T Consensus 265 ~l~~~~~~~s~Ra~----i~l~raArA~Aal~GR 294 (337)
T TIGR02030 265 ELCAELDVDGLRGE----LTLNRAAKALAAFEGR 294 (337)
T ss_pred HHHHHHCCCCCcHH----HHHHHHHHHHHHHcCC
Confidence 76433222 33332 2255555566666654
No 141
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.2e-13 Score=128.44 Aligned_cols=162 Identities=19% Similarity=0.299 Sum_probs=104.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCC----CceEEe-ccccccccc--chhhhhCCCCCCCcccchhhHHHHHH----
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSK----EAMVRI-DMSEYMEKH--TVSKFFGSPPGYVGFENGGQLTEAVR---- 86 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---- 86 (287)
+.++|+||+|||||++|+.+++.+.-.. .++-.+ .|....... .+..+.+ ....+.+..+.+.+.+.
T Consensus 39 ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~--a~~~~Id~iR~L~~~~~~~p~ 116 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDG--ASNRGIDDAKRLKEAIGYAPM 116 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEec--ccccCHHHHHHHHHHHHhhhh
Confidence 4699999999999999999999984221 111110 000000000 0000100 11122222233333333
Q ss_pred hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 87 HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 87 ~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
.+.+.|+||||+|.++...++.|++.+++.. ..++||++++... .
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~-----------~~~ifILaTt~~~------------------------k 161 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPP-----------ARVTFVLATTEPH------------------------K 161 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccC-----------CCEEEEEecCChh------------------------h
Confidence 2456799999999999999999999999731 2456777776432 2
Q ss_pred CChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhcc
Q 047225 167 FRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGY 226 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 226 (287)
+.+.+.+|+ ..+.|++++.+++.+++...+.+. .+.+++++++.|+..+.
T Consensus 162 ll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~e---------gi~id~eal~lIA~~s~ 211 (624)
T PRK14959 162 FPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGRE---------GVDYDPAAVRLIARRAA 211 (624)
T ss_pred hhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC
Confidence 345788999 889999999999999997765432 35689999999998753
No 142
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.55 E-value=1.2e-13 Score=130.19 Aligned_cols=190 Identities=17% Similarity=0.287 Sum_probs=119.8
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc--cchhhhhCCCCCCCcccchhh
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK--HTVSKFFGSPPGYVGFENGGQ 80 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 80 (287)
++.++..+... +..+.++|+||+|+|||++|+.+|+.+...........|...... ....-+.+...+..+....+.
T Consensus 27 v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IRe 105 (725)
T PRK07133 27 VQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRE 105 (725)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHH
Confidence 34455555543 333458999999999999999999998432211000111111000 000000011112223333344
Q ss_pred HHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHH
Q 047225 81 LTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQME 156 (287)
Q Consensus 81 ~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~ 156 (287)
+.+.+.. +++.|++|||++.+....+++|++.+++. .+.+++|++++...
T Consensus 106 Lie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-----------P~~tifILaTte~~--------------- 159 (725)
T PRK07133 106 LIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-----------PKHVIFILATTEVH--------------- 159 (725)
T ss_pred HHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-----------CCceEEEEEcCChh---------------
Confidence 5555443 44579999999999999999999999973 12456777765322
Q ss_pred HHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHH
Q 047225 157 RGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLR 236 (287)
Q Consensus 157 ~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~ 236 (287)
.+.+.+.+|| ..+.|.|++.+++.+++...+.+. ++.++++++..++..+. .++|.+.
T Consensus 160 ---------KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~ke---------gI~id~eAl~~LA~lS~---GslR~Al 217 (725)
T PRK07133 160 ---------KIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKE---------NISYEKNALKLIAKLSS---GSLRDAL 217 (725)
T ss_pred ---------hhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHHHHH
Confidence 3457899999 899999999999999997766542 36788899999888653 3445555
Q ss_pred HHHHH
Q 047225 237 RAIGR 241 (287)
Q Consensus 237 ~~i~~ 241 (287)
..+++
T Consensus 218 slLek 222 (725)
T PRK07133 218 SIAEQ 222 (725)
T ss_pred HHHHH
Confidence 55554
No 143
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.2e-13 Score=128.24 Aligned_cols=189 Identities=15% Similarity=0.197 Sum_probs=116.6
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccc-----ccchhhhhC-CCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYME-----KHTVSKFFG-SPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~ 77 (287)
+.++..+.... ..+.++|+||+|+|||++|+.+++.+.-... ...-.|..... .....+++. ......+.+.
T Consensus 26 ~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ 103 (527)
T PRK14969 26 RALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETG-VTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDA 103 (527)
T ss_pred HHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHH
Confidence 34444444432 2234799999999999999999999843211 00011211100 000001110 0011122222
Q ss_pred hhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+.. +++.|++|||+|+++...++.|++.+++.. ..+.||++|+...
T Consensus 104 ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp-----------~~~~fIL~t~d~~------------ 160 (527)
T PRK14969 104 MRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPP-----------EHVKFILATTDPQ------------ 160 (527)
T ss_pred HHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCC-----------CCEEEEEEeCChh------------
Confidence 3334443332 345799999999999999999999999731 2456777665432
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCch
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r 233 (287)
.+.+.+.+|| ..+.|.+++.+++.+.+...+.+. .+.++++++..++..+. .++|
T Consensus 161 ------------kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~e---------gi~~~~~al~~la~~s~---Gslr 215 (527)
T PRK14969 161 ------------KIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQE---------NIPFDATALQLLARAAA---GSMR 215 (527)
T ss_pred ------------hCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHH
Confidence 2345789999 999999999999999997776542 35789999999988753 3445
Q ss_pred hHHHHHHHH
Q 047225 234 PLRRAIGRL 242 (287)
Q Consensus 234 ~l~~~i~~~ 242 (287)
.+.+.++++
T Consensus 216 ~al~lldqa 224 (527)
T PRK14969 216 DALSLLDQA 224 (527)
T ss_pred HHHHHHHHH
Confidence 555555443
No 144
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.6e-13 Score=128.68 Aligned_cols=189 Identities=19% Similarity=0.255 Sum_probs=118.6
Q ss_pred hhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC----ceEEe-cccccccccchhhhhCCCCCCCcccchh
Q 047225 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE----AMVRI-DMSEYMEKHTVSKFFGSPPGYVGFENGG 79 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (287)
.++..+... +..+.++|+||+|+|||++++.+++.+.-... ++-.+ .|..+.......-+.-...+..+.+..+
T Consensus 27 ~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir 105 (576)
T PRK14965 27 TLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIR 105 (576)
T ss_pred HHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHH
Confidence 344444432 33345899999999999999999999843211 11111 0111110000000000111112223333
Q ss_pred hHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHH
Q 047225 80 QLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQM 155 (287)
Q Consensus 80 ~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~ 155 (287)
.+.+.+.. .++.|++|||+|.++...+++|++.+++. .++++||++|+...
T Consensus 106 ~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEep-----------p~~~~fIl~t~~~~-------------- 160 (576)
T PRK14965 106 ELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEP-----------PPHVKFIFATTEPH-------------- 160 (576)
T ss_pred HHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcC-----------CCCeEEEEEeCChh--------------
Confidence 44444433 34579999999999999999999999973 23557787776432
Q ss_pred HHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhH
Q 047225 156 ERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l 235 (287)
.+.+.+.+|+ ..+.|.+++.+++...+...+.+. .+.++++++..++..+. .++|.+
T Consensus 161 ----------kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~e---------gi~i~~~al~~la~~a~---G~lr~a 217 (576)
T PRK14965 161 ----------KVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQE---------GISISDAALALVARKGD---GSMRDS 217 (576)
T ss_pred ----------hhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHHcC---CCHHHH
Confidence 3456899999 899999999999999987776542 46789999999988754 344555
Q ss_pred HHHHHHH
Q 047225 236 RRAIGRL 242 (287)
Q Consensus 236 ~~~i~~~ 242 (287)
...++++
T Consensus 218 l~~Ldql 224 (576)
T PRK14965 218 LSTLDQV 224 (576)
T ss_pred HHHHHHH
Confidence 5555443
No 145
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=8.9e-14 Score=113.33 Aligned_cols=140 Identities=32% Similarity=0.457 Sum_probs=101.9
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
.|. .++|+||||||||.+++++|+.. .-.++.++.++.. +..+|.. ..-.+.++-+.++...+|+|
T Consensus 180 QPK-GvlLygppgtGktLlaraVahht---~c~firvsgselv-----qk~igeg-----srmvrelfvmarehapsiif 245 (404)
T KOG0728|consen 180 QPK-GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELV-----QKYIGEG-----SRMVRELFVMAREHAPSIIF 245 (404)
T ss_pred CCc-ceEEecCCCCchhHHHHHHHhhc---ceEEEEechHHHH-----HHHhhhh-----HHHHHHHHHHHHhcCCceEe
Confidence 344 49999999999999999999876 5667777766544 3444421 11124566677777779999
Q ss_pred EcCcccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 95 FDEIEKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 95 iDeid~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
+||+|-. +.++|...+.+++.-.-... ..+.-+|+++|.-.
T Consensus 246 mdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea------tknikvimatnrid---------------------- 297 (404)
T KOG0728|consen 246 MDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA------TKNIKVIMATNRID---------------------- 297 (404)
T ss_pred eecccccccccccCCCCccHHHHHHHHHHHHhcccccc------ccceEEEEeccccc----------------------
Confidence 9999943 66889888888875321111 13678999999742
Q ss_pred HhcCChhHH--hccCceEEeCCCCHHHHHHHHHHHHH
Q 047225 164 RRRFRPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLK 198 (287)
Q Consensus 164 ~~~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~ 198 (287)
.++|+|+ .|+|..|.||||+.+...+|++..-.
T Consensus 298 --ild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 298 --ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred --cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 3456777 79999999999999999999965543
No 146
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=1.7e-13 Score=125.69 Aligned_cols=189 Identities=20% Similarity=0.277 Sum_probs=117.3
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC----CceEE-ecccccccccchhhhh-CCCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK----EAMVR-IDMSEYMEKHTVSKFF-GSPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 77 (287)
+.++..+.. ++..+.++|+||+|+|||++|+.+|+.+.... .++-. .+|..+.... ..+++ .......|.+.
T Consensus 26 ~~L~~~i~~-~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~-~~d~~eidaas~~gvd~ 103 (486)
T PRK14953 26 RILKNAVKL-QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGS-FPDLIEIDAASNRGIDD 103 (486)
T ss_pred HHHHHHHHc-CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCC-CCcEEEEeCccCCCHHH
Confidence 344444444 23334578999999999999999999984211 11111 1121111100 00000 01111122222
Q ss_pred hhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+.. +.+.|++|||+|.++...++.|++.+++. .+.+++|++++...
T Consensus 104 ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-----------p~~~v~Il~tt~~~------------ 160 (486)
T PRK14953 104 IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-----------PPRTIFILCTTEYD------------ 160 (486)
T ss_pred HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-----------CCCeEEEEEECCHH------------
Confidence 3344444443 34579999999999999999999999873 13456776665321
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCch
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r 233 (287)
.+.+.+.+|+ ..+.|+|++.+++..++...+... .+.+++++++.++..+. .++|
T Consensus 161 ------------kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~e---------gi~id~~al~~La~~s~---G~lr 215 (486)
T PRK14953 161 ------------KIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEE---------KIEYEEKALDLLAQASE---GGMR 215 (486)
T ss_pred ------------HHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHH
Confidence 2346788999 789999999999999997776542 35789999999987643 3455
Q ss_pred hHHHHHHHH
Q 047225 234 PLRRAIGRL 242 (287)
Q Consensus 234 ~l~~~i~~~ 242 (287)
.+.+.++++
T Consensus 216 ~al~~Ldkl 224 (486)
T PRK14953 216 DAASLLDQA 224 (486)
T ss_pred HHHHHHHHH
Confidence 555555544
No 147
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.53 E-value=2.1e-13 Score=130.62 Aligned_cols=188 Identities=18% Similarity=0.239 Sum_probs=117.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccc--hhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFEN--GGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~iD 96 (287)
+++|+||||||||++++.++..+.....+....++.-+... ...++. ...+.|-.+ ...+++.+......+||||
T Consensus 209 n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~--~~~lla-G~~~~Ge~e~rl~~l~~~l~~~~~~ILfID 285 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD--IGSLLA-GTKYRGDFEKRFKALLKQLEQDTNSILFID 285 (758)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc--HHHHhc-ccchhhhHHHHHHHHHHHHHhcCCCEEEec
Confidence 68999999999999999999887443334333333332211 111110 011122111 1234555555566799999
Q ss_pred Ccccc---------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 97 EIEKA---------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 97 eid~~---------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|++.+ ..+..+.|.+++..| +..+|.+|++... ...+ ..
T Consensus 286 EIh~L~g~g~~~~g~~d~~nlLkp~L~~g-------------~i~vIgATt~~E~-----------------~~~~--~~ 333 (758)
T PRK11034 286 EIHTIIGAGAASGGQVDAANLIKPLLSSG-------------KIRVIGSTTYQEF-----------------SNIF--EK 333 (758)
T ss_pred cHHHHhccCCCCCcHHHHHHHHHHHHhCC-------------CeEEEecCChHHH-----------------HHHh--hc
Confidence 99965 234556677777764 4468888886421 1111 23
Q ss_pred ChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHH
Q 047225 168 RPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNL 247 (287)
Q Consensus 168 ~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~ 247 (287)
+++|.+|| ..|.+++|+.++...|++....++... ..+.++++++..++..+..+ .+.|.+....-+++..+-
T Consensus 334 D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~-----h~v~i~~~al~~a~~ls~ry-i~~r~lPdKaidlldea~ 406 (758)
T PRK11034 334 DRALARRF-QKIDITEPSIEETVQIINGLKPKYEAH-----HDVRYTAKAVRAAVELAVKY-INDRHLPDKAIDVIDEAG 406 (758)
T ss_pred cHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhc-----cCCCcCHHHHHHHHHHhhcc-ccCccChHHHHHHHHHHH
Confidence 68999999 689999999999999998776655442 25789999999888764332 333544444444555444
Q ss_pred H
Q 047225 248 A 248 (287)
Q Consensus 248 ~ 248 (287)
+
T Consensus 407 a 407 (758)
T PRK11034 407 A 407 (758)
T ss_pred H
Confidence 3
No 148
>PRK06620 hypothetical protein; Validated
Probab=99.53 E-value=2.7e-13 Score=111.80 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=91.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
++++|+||||||||++++++++.. +. ..+..... ..+.... ..+++|||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~--~~~~~~~~------------------------~~~~~~~--~d~lliDd 93 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA--YIIKDIFF------------------------NEEILEK--YNAFIIED 93 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC--EEcchhhh------------------------chhHHhc--CCEEEEec
Confidence 369999999999999999988765 21 11111000 0011222 25999999
Q ss_pred cccccHH-HHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC
Q 047225 98 IEKAHRD-VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID 176 (287)
Q Consensus 98 id~~~~~-~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 176 (287)
++..... ....+..+.+.| . .++++++..+..+ .+ ++|.+|+.
T Consensus 94 i~~~~~~~lf~l~N~~~e~g-------------~-~ilits~~~p~~l---------------------~l-~~L~SRl~ 137 (214)
T PRK06620 94 IENWQEPALLHIFNIINEKQ-------------K-YLLLTSSDKSRNF---------------------TL-PDLSSRIK 137 (214)
T ss_pred cccchHHHHHHHHHHHHhcC-------------C-EEEEEcCCCcccc---------------------ch-HHHHHHHh
Confidence 9976432 222222233432 1 3555554433322 23 78999994
Q ss_pred --ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHH
Q 047225 177 --EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 177 --~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
..+.+.||+.+++..++++.... . .+.++++++++|+.... .++|.+..++++
T Consensus 138 ~gl~~~l~~pd~~~~~~~l~k~~~~-------~--~l~l~~ev~~~L~~~~~---~d~r~l~~~l~~ 192 (214)
T PRK06620 138 SVLSILLNSPDDELIKILIFKHFSI-------S--SVTISRQIIDFLLVNLP---REYSKIIEILEN 192 (214)
T ss_pred CCceEeeCCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHHcc---CCHHHHHHHHHH
Confidence 26999999999998888766543 1 46899999999999752 345677777765
No 149
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2.6e-13 Score=125.58 Aligned_cols=188 Identities=15% Similarity=0.206 Sum_probs=116.2
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccc-----ccchhhhhC-CCCCCCcccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYME-----KHTVSKFFG-SPPGYVGFEN 77 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~ 77 (287)
+.++..+... +..+.++|+||+|+|||++|+.+|+.+.-.+..-. -.|..-.. ...-.+++. ...+..+...
T Consensus 26 ~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~-~~Cg~C~sCr~i~~~~h~DiieIdaas~igVd~ 103 (605)
T PRK05896 26 KILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG-DCCNSCSVCESINTNQSVDIVELDAASNNGVDE 103 (605)
T ss_pred HHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-CCCcccHHHHHHHcCCCCceEEeccccccCHHH
Confidence 3444444332 22235999999999999999999999842211100 01111000 000000000 1111122222
Q ss_pred hhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCch
Q 047225 78 GGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSD 153 (287)
Q Consensus 78 ~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~ 153 (287)
.+.+.+.+.. +++.|++|||+|.++...+++|++.+++.. +.+++|++++...
T Consensus 104 IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp-----------~~tvfIL~Tt~~~------------ 160 (605)
T PRK05896 104 IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPP-----------KHVVFIFATTEFQ------------ 160 (605)
T ss_pred HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCC-----------CcEEEEEECCChH------------
Confidence 2334333333 345799999999999999999999999731 2456777765421
Q ss_pred HHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCch
Q 047225 154 QMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGAR 233 (287)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r 233 (287)
.+.+.+.+|+ ..+.|++++.+++..++...+.+. ++.++++++..++..+. .++|
T Consensus 161 ------------KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~ke---------gi~Is~eal~~La~lS~---GdlR 215 (605)
T PRK05896 161 ------------KIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKE---------KIKIEDNAIDKIADLAD---GSLR 215 (605)
T ss_pred ------------hhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CcHH
Confidence 3457899999 899999999999999997776542 45789999999988753 3445
Q ss_pred hHHHHHHH
Q 047225 234 PLRRAIGR 241 (287)
Q Consensus 234 ~l~~~i~~ 241 (287)
.+.+.+++
T Consensus 216 ~AlnlLek 223 (605)
T PRK05896 216 DGLSILDQ 223 (605)
T ss_pred HHHHHHHH
Confidence 55555554
No 150
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.53 E-value=2.7e-13 Score=128.74 Aligned_cols=199 Identities=18% Similarity=0.201 Sum_probs=120.8
Q ss_pred ccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcC--------------------------------CCCceEEecccc
Q 047225 8 VGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFG--------------------------------SKEAMVRIDMSE 55 (287)
Q Consensus 8 ~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~--------------------------------~~~~~~~~~~~~ 55 (287)
..+-+|. .++++|.|++|||||++++.|++.+.. ...+++.+.++.
T Consensus 18 ~~av~~~--~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~ 95 (633)
T TIGR02442 18 LNAVDPR--IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGA 95 (633)
T ss_pred HHhhCCC--CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCC
Confidence 3444442 246999999999999999999998831 012222222221
Q ss_pred cccccchhhhhCCCCCC----CcccchhhHHHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecC-CCceeec-c
Q 047225 56 YMEKHTVSKFFGSPPGY----VGFENGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG-KGQTVDL-K 129 (287)
Q Consensus 56 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~-~g~~i~~-~ 129 (287)
. ...++|...-. .|.. ..-...+...+.++|||||++++++.+++.|++++++|.+... .|..... .
T Consensus 96 t-----~~~l~G~~d~~~~l~~g~~--~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g~~~~~~~ 168 (633)
T TIGR02442 96 T-----EDRVVGSLDIERALREGEK--AFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREGLSVSHPA 168 (633)
T ss_pred c-----HHHcCCcccHHHHhhcCCe--eecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECCceeeecC
Confidence 1 12233321000 0000 0001233344668999999999999999999999999875433 3544444 4
Q ss_pred ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCC-HHHHHHHHHHHHH----------
Q 047225 130 NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLN-KMQLMEIVDIMLK---------- 198 (287)
Q Consensus 130 ~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~-~~~~~~il~~~l~---------- 198 (287)
++++|+|+|+... .|+++|++||+..+.++++. .++..+++...+.
T Consensus 169 ~~~lIat~np~eg-----------------------~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~ 225 (633)
T TIGR02442 169 RFVLIGTMNPEEG-----------------------DLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAA 225 (633)
T ss_pred CeEEEEecCCCCC-----------------------CCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHH
Confidence 7899999997432 46789999998888888876 4555666654322
Q ss_pred ----------HHHHHHHhcCcEEEeChhHHHHHHHhccCCCC-CchhHHHH
Q 047225 199 ----------EIYERLEAKNMELTVTHTFKKKLIEEGYNPSY-GARPLRRA 238 (287)
Q Consensus 199 ----------~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~-~~r~l~~~ 238 (287)
+........-..+.++++++++++......+. |.|....+
T Consensus 226 ~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~ 276 (633)
T TIGR02442 226 RWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVM 276 (633)
T ss_pred HhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHH
Confidence 00011111122468899999999887554433 34444333
No 151
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.9e-13 Score=119.84 Aligned_cols=193 Identities=21% Similarity=0.199 Sum_probs=122.6
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHhcCCC--CceEEecccccccccchh----hhhCCCCCCCcccc---hhhHHHH
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEYFGSK--EAMVRIDMSEYMEKHTVS----KFFGSPPGYVGFEN---GGQLTEA 84 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~ 84 (287)
+.|. |++++||||||||.+++.+.+.+.... ...+++||..+.....+. .-++. ....|... -..+.+.
T Consensus 40 ~~p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~-~p~~g~~~~~~~~~l~~~ 117 (366)
T COG1474 40 ERPS-NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGK-VPLTGDSSLEILKRLYDN 117 (366)
T ss_pred CCCc-cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCC-CCCCCCchHHHHHHHHHH
Confidence 4555 599999999999999999999994332 227999999888765432 22222 22223222 2233344
Q ss_pred HHh-CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 85 VRH-RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 85 ~~~-~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
+.. +..-|+++||+|.+.....+.|..++...... ...+.+|+.+|... +
T Consensus 118 ~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--------~~~v~vi~i~n~~~---------------------~ 168 (366)
T COG1474 118 LSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--------KVKVSIIAVSNDDK---------------------F 168 (366)
T ss_pred HHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--------ceeEEEEEEeccHH---------------------H
Confidence 444 44569999999988666446666666543222 12446777776421 1
Q ss_pred HhcCChhHHhccCce-EEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 164 RRRFRPEFLNRIDEV-IVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 164 ~~~~~~~l~~r~~~~-i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
...+.+.+.+++... |.|||++.+++.+|+....+.. + ..-.+++++++.++........++|-.-..+..+
T Consensus 169 ~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~---~----~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A 241 (366)
T COG1474 169 LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG---F----SAGVIDDDVLKLIAALVAAESGDARKAIDILRRA 241 (366)
T ss_pred HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh---c----cCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHH
Confidence 234567777777544 9999999999999997666532 1 1347899999999976544443444433334433
Q ss_pred HH
Q 047225 243 LE 244 (287)
Q Consensus 243 ~~ 244 (287)
..
T Consensus 242 ~e 243 (366)
T COG1474 242 GE 243 (366)
T ss_pred HH
Confidence 33
No 152
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.52 E-value=3.7e-13 Score=119.95 Aligned_cols=186 Identities=16% Similarity=0.258 Sum_probs=112.5
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccccc--------chhhhhCCCCCCCcc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKH--------TVSKFFGSPPGYVGF 75 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 75 (287)
+.++..+.+. +..+.++|+||||+|||++++.+++.+......- .-.|....... .+..+-+ ....+.
T Consensus 24 ~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~~~~~~~~~~~~~~--~~~~~~ 99 (355)
T TIGR02397 24 QTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPD-GEPCNECESCKEINSGSSLDVIEIDA--ASNNGV 99 (355)
T ss_pred HHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHhcCCCCCEEEeec--cccCCH
Confidence 4444444443 3334689999999999999999999984321100 00111100000 0000000 000111
Q ss_pred cchhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCC
Q 047225 76 ENGGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILG 151 (287)
Q Consensus 76 ~~~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~ 151 (287)
.....+.+.+.. +++.+++|||+|.++...++.|++.+++. .+++++|++++...
T Consensus 100 ~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-----------~~~~~lIl~~~~~~---------- 158 (355)
T TIGR02397 100 DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-----------PEHVVFILATTEPH---------- 158 (355)
T ss_pred HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-----------ccceeEEEEeCCHH----------
Confidence 111234443333 33469999999999999999999999862 12456777765421
Q ss_pred chHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCC
Q 047225 152 SDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYG 231 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 231 (287)
.+.+.+.+|+ ..+.|+|++.+++.+++...+.+. .+.++++++..++.... .+
T Consensus 159 --------------~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~---------g~~i~~~a~~~l~~~~~---g~ 211 (355)
T TIGR02397 159 --------------KIPATILSRC-QRFDFKRIPLEDIVERLKKILDKE---------GIKIEDEALELIARAAD---GS 211 (355)
T ss_pred --------------HHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CC
Confidence 1236788999 889999999999999997776542 35788999999988642 23
Q ss_pred chhHHHHHHH
Q 047225 232 ARPLRRAIGR 241 (287)
Q Consensus 232 ~r~l~~~i~~ 241 (287)
.|.+.+.+++
T Consensus 212 ~~~a~~~lek 221 (355)
T TIGR02397 212 LRDALSLLDQ 221 (355)
T ss_pred hHHHHHHHHH
Confidence 4555555544
No 153
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=2.3e-13 Score=127.34 Aligned_cols=189 Identities=15% Similarity=0.150 Sum_probs=119.4
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC-----ceEEecccccccccch-----hhhh-CCCCCC
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE-----AMVRIDMSEYMEKHTV-----SKFF-GSPPGY 72 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~-----~~~~~~~~~~~~~~~~-----~~~~-~~~~~~ 72 (287)
+.+++.+... +..+.++|+||+|+|||++|+.+++.+.-... +.+. .|........+ .+++ -...+.
T Consensus 34 ~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-~cg~c~~C~~i~~g~h~Dv~e~~a~s~ 111 (598)
T PRK09111 34 RTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID-LCGVGEHCQAIMEGRHVDVLEMDAASH 111 (598)
T ss_pred HHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc-cCcccHHHHHHhcCCCCceEEeccccc
Confidence 3344444433 33336999999999999999999998832211 0000 11110000000 0000 011223
Q ss_pred CcccchhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhc
Q 047225 73 VGFENGGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARES 148 (287)
Q Consensus 73 ~~~~~~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~ 148 (287)
.+.+..+.+.+.+.. .++.|++|||+|.++...++.|++.+++. .+.+.||++++...
T Consensus 112 ~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-----------p~~~~fIl~tte~~------- 173 (598)
T PRK09111 112 TGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP-----------PPHVKFIFATTEIR------- 173 (598)
T ss_pred CCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-----------CCCeEEEEEeCChh-------
Confidence 333344445444443 34679999999999999999999999973 23556777775432
Q ss_pred cCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCC
Q 047225 149 ILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNP 228 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~ 228 (287)
.+.+.+.+|| ..+.|.+++.+++..++...+.+. .+.+++++++.|+..+.
T Consensus 174 -----------------kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~ke---------gi~i~~eAl~lIa~~a~-- 224 (598)
T PRK09111 174 -----------------KVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKE---------GVEVEDEALALIARAAE-- 224 (598)
T ss_pred -----------------hhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC--
Confidence 2346789999 899999999999999997777542 46789999999998753
Q ss_pred CCCchhHHHHHHHH
Q 047225 229 SYGARPLRRAIGRL 242 (287)
Q Consensus 229 ~~~~r~l~~~i~~~ 242 (287)
.++|.+...++++
T Consensus 225 -Gdlr~al~~Ldkl 237 (598)
T PRK09111 225 -GSVRDGLSLLDQA 237 (598)
T ss_pred -CCHHHHHHHHHHH
Confidence 3445555555543
No 154
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.52 E-value=6.1e-13 Score=118.99 Aligned_cols=193 Identities=18% Similarity=0.158 Sum_probs=111.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC--C----CceEEecccccccccch-----hhhh--CCCCCCCcccch---hhHH
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS--K----EAMVRIDMSEYMEKHTV-----SKFF--GSPPGYVGFENG---GQLT 82 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~--~----~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~---~~~~ 82 (287)
+++++||||||||++++.+++.+... . ..+++++|......... ..+. +......+.... ..+.
T Consensus 42 ~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~ 121 (365)
T TIGR02928 42 NVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLY 121 (365)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHH
Confidence 69999999999999999999876321 1 46788898765543211 1222 221111221111 2233
Q ss_pred HHHHh-CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHH
Q 047225 83 EAVRH-RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAE 161 (287)
Q Consensus 83 ~~~~~-~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~ 161 (287)
+.+.. ....+|+|||+|.+.......|..++....... ....++.+|+++|....
T Consensus 122 ~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~-----~~~~~v~lI~i~n~~~~------------------- 177 (365)
T TIGR02928 122 KELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD-----LDNAKVGVIGISNDLKF------------------- 177 (365)
T ss_pred HHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC-----CCCCeEEEEEEECCcch-------------------
Confidence 44433 345689999999984222233444433211000 11134567777775421
Q ss_pred HHHhcCChhHHhccC-ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 162 ELRRRFRPEFLNRID-EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 162 ~~~~~~~~~l~~r~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
...+.+.+.+||. ..+.|+|++.+++.+|+...+... + ....+++++++.++.........+|....++.
T Consensus 178 --~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~---~----~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~ 248 (365)
T TIGR02928 178 --RENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA---F----YDGVLDDGVIPLCAALAAQEHGDARKAIDLLR 248 (365)
T ss_pred --HhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh---c----cCCCCChhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 1134567778885 569999999999999998776421 1 12347888888887654333334444444444
Q ss_pred HHHH
Q 047225 241 RLLE 244 (287)
Q Consensus 241 ~~~~ 244 (287)
.+..
T Consensus 249 ~a~~ 252 (365)
T TIGR02928 249 VAGE 252 (365)
T ss_pred HHHH
Confidence 4443
No 155
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.52 E-value=9.6e-14 Score=126.17 Aligned_cols=182 Identities=18% Similarity=0.264 Sum_probs=128.9
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCC----CceEEe-cccccccccchhhhhCCCCCCCcccchhhHHHHHHh--
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSK----EAMVRI-DMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH-- 87 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 87 (287)
+-.+..+|.||.|||||++||.+|+.+.-.. .++..+ .|........+..+--+..+..|.++.+.+.+.+.-
T Consensus 36 ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P 115 (515)
T COG2812 36 RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAP 115 (515)
T ss_pred cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCC
Confidence 3344599999999999999999999983221 222211 111111111111111123444555555666665544
Q ss_pred --CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHh
Q 047225 88 --RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRR 165 (287)
Q Consensus 88 --~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (287)
+.+.|++|||++.++....++|++-+|+. ++++.||++|....
T Consensus 116 ~~~ryKVyiIDEvHMLS~~afNALLKTLEEP-----------P~hV~FIlATTe~~------------------------ 160 (515)
T COG2812 116 SEGRYKVYIIDEVHMLSKQAFNALLKTLEEP-----------PSHVKFILATTEPQ------------------------ 160 (515)
T ss_pred ccccceEEEEecHHhhhHHHHHHHhcccccC-----------ccCeEEEEecCCcC------------------------
Confidence 34689999999999999999999999983 34677888776542
Q ss_pred cCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 166 RFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 166 ~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
.+++..+||| +.+.|..++.+++...+...+.+. .+.++++++..++..+. .++|+....++.++.
T Consensus 161 Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E---------~I~~e~~aL~~ia~~a~---Gs~RDalslLDq~i~ 226 (515)
T COG2812 161 KIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKE---------GINIEEDALSLIARAAE---GSLRDALSLLDQAIA 226 (515)
T ss_pred cCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhc---------CCccCHHHHHHHHHHcC---CChhhHHHHHHHHHH
Confidence 4678999999 999999999999999988877653 68999999999998753 567887777776554
No 156
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=4.8e-13 Score=119.74 Aligned_cols=178 Identities=17% Similarity=0.251 Sum_probs=113.8
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC-------ceEEecccccccccchhhhhCCCCCCCcc
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE-------AMVRIDMSEYMEKHTVSKFFGSPPGYVGF 75 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (287)
++.++..+....-| ++++|+||||+|||++++.+++.+..... .+..+..... ...+.
T Consensus 26 ~~~l~~~i~~~~~~-~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~ 90 (367)
T PRK14970 26 TNTLLNAIENNHLA-QALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAA--------------SNNSV 90 (367)
T ss_pred HHHHHHHHHcCCCC-eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccc--------------cCCCH
Confidence 34455555543333 47999999999999999999998843211 1111111000 00011
Q ss_pred cchhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCC
Q 047225 76 ENGGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILG 151 (287)
Q Consensus 76 ~~~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~ 151 (287)
.....+.+.+.. +++.+++|||++.+....++.|++.+++. ...+++|++++...
T Consensus 91 ~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-----------~~~~~~Il~~~~~~---------- 149 (367)
T PRK14970 91 DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-----------PAHAIFILATTEKH---------- 149 (367)
T ss_pred HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-----------CCceEEEEEeCCcc----------
Confidence 111222222222 34579999999999999999999988762 12446777765432
Q ss_pred chHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCC
Q 047225 152 SDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYG 231 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 231 (287)
.+.+++.+|+ ..+.|++++.+++..++...+.+. .+.+++++++.++..+. .+
T Consensus 150 --------------kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~---------g~~i~~~al~~l~~~~~---gd 202 (367)
T PRK14970 150 --------------KIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKE---------GIKFEDDALHIIAQKAD---GA 202 (367)
T ss_pred --------------cCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhCC---CC
Confidence 3457889999 789999999999999997766542 45789999999998642 34
Q ss_pred chhHHHHHHHHH
Q 047225 232 ARPLRRAIGRLL 243 (287)
Q Consensus 232 ~r~l~~~i~~~~ 243 (287)
+|.+...+++++
T Consensus 203 lr~~~~~lekl~ 214 (367)
T PRK14970 203 LRDALSIFDRVV 214 (367)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 157
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.51 E-value=3.3e-13 Score=119.38 Aligned_cols=190 Identities=15% Similarity=0.214 Sum_probs=128.7
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCC--CCceEEecccccccccchhhhhCCCCCCCcccchhh
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGS--KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQ 80 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
...++.....|+++.++++|+||+|+|||+|++++++..... +..+++++...+.... +..+.. .....
T Consensus 99 ~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~-v~a~~~--------~~~~~ 169 (408)
T COG0593 99 YAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDF-VKALRD--------NEMEK 169 (408)
T ss_pred HHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHH-HHHHHh--------hhHHH
Confidence 445566667777778899999999999999999999988433 3456666665544221 111000 11234
Q ss_pred HHHHHHhCCcEEEEEcCccccc--HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHH
Q 047225 81 LTEAVRHRPHSVILFDEIEKAH--RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERG 158 (287)
Q Consensus 81 ~~~~~~~~~~~il~iDeid~~~--~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~ 158 (287)
+.+.+ .. .+++|||++.+. ...+..++.+++.-. ..+-.+++|+...+..+.
T Consensus 170 Fk~~y-~~--dlllIDDiq~l~gk~~~qeefFh~FN~l~----------~~~kqIvltsdr~P~~l~------------- 223 (408)
T COG0593 170 FKEKY-SL--DLLLIDDIQFLAGKERTQEEFFHTFNALL----------ENGKQIVLTSDRPPKELN------------- 223 (408)
T ss_pred HHHhh-cc--CeeeechHhHhcCChhHHHHHHHHHHHHH----------hcCCEEEEEcCCCchhhc-------------
Confidence 44455 33 499999999753 356777777666411 011268888887776552
Q ss_pred HHHHHHhcCChhHHhccC--ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHH
Q 047225 159 VAEELRRRFRPEFLNRID--EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLR 236 (287)
Q Consensus 159 ~~~~~~~~~~~~l~~r~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~ 236 (287)
.+.+.|.+||. ..+.+.||+.+....|+...... ..+.+++++..+++..-. -++|++.
T Consensus 224 -------~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~---------~~~~i~~ev~~~la~~~~---~nvReLe 284 (408)
T COG0593 224 -------GLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAED---------RGIEIPDEVLEFLAKRLD---RNVRELE 284 (408)
T ss_pred -------cccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHHhh---ccHHHHH
Confidence 24588999996 44999999999999999763322 257999999999998732 2568888
Q ss_pred HHHHHHHHHH
Q 047225 237 RAIGRLLEDN 246 (287)
Q Consensus 237 ~~i~~~~~~~ 246 (287)
.+++++...+
T Consensus 285 gaL~~l~~~a 294 (408)
T COG0593 285 GALNRLDAFA 294 (408)
T ss_pred HHHHHHHHHH
Confidence 8887665533
No 158
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.51 E-value=8.4e-13 Score=117.98 Aligned_cols=149 Identities=25% Similarity=0.427 Sum_probs=97.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhh-CCCCCCCcccch-hhH---HHHHHh--CCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFF-GSPPGYVGFENG-GQL---TEAVRH--RPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~---~~~~~~--~~~~ 91 (287)
+++|+||||||||++|+.++..+... .....+++.++....+..+++ |..+...|+... +.+ ...+.. ....
T Consensus 196 ~iil~GppGtGKT~lA~~la~~l~~~-~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~ 274 (459)
T PRK11331 196 NIILQGPPGVGKTFVARRLAYLLTGE-KAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKY 274 (459)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCC-cccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCc
Confidence 69999999999999999999988542 233344555555555556665 344555555432 222 222332 2347
Q ss_pred EEEEcCcccccHH-HHHHHHHhhcCce------ee--cC--CCceeec-cceEEEEeecCCchhhhhhccCCchHHHHHH
Q 047225 92 VILFDEIEKAHRD-VLNVMLQLLDDGR------VT--DG--KGQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGV 159 (287)
Q Consensus 92 il~iDeid~~~~~-~~~~L~~~l~~~~------~~--~~--~g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~ 159 (287)
++||||+|+.+.+ +...++.+++.+. +. .. ++..+.. +++.||+|+|.....+
T Consensus 275 vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~--------------- 339 (459)
T PRK11331 275 VFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSL--------------- 339 (459)
T ss_pred EEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccch---------------
Confidence 9999999999965 5778889998542 11 11 1223333 5899999999976543
Q ss_pred HHHHHhcCChhHHhccCceEEeCC-CCHHHH
Q 047225 160 AEELRRRFRPEFLNRIDEVIVFRQ-LNKMQL 189 (287)
Q Consensus 160 ~~~~~~~~~~~l~~r~~~~i~~~~-~~~~~~ 189 (287)
..++.+|.+|| ..|.+.| ++...+
T Consensus 340 -----~~lD~AlrRRF-~fi~i~p~~~~~~~ 364 (459)
T PRK11331 340 -----AVVDYALRRRF-SFIDIEPGFDTPQF 364 (459)
T ss_pred -----hhccHHHHhhh-heEEecCCCChHHH
Confidence 13678999999 7777776 454333
No 159
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.51 E-value=1.7e-14 Score=137.68 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=104.8
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC----CCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS----KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 93 (287)
.|+||+|+||||||.+++.+++..... +.+...++|...... .....+.. ..-..++.....+++
T Consensus 493 ihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~------~d~~tG~~-----~le~GaLvlAdgGtL 561 (915)
T PTZ00111 493 INVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKF------NESDNGRA-----MIQPGAVVLANGGVC 561 (915)
T ss_pred ceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhh------cccccCcc-----cccCCcEEEcCCCeE
Confidence 489999999999999999999865321 133344444332110 00000000 001123444556899
Q ss_pred EEcCcccccHHHHHHHHHhhcCceeecCC-Cceeec-cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhH
Q 047225 94 LFDEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEF 171 (287)
Q Consensus 94 ~iDeid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (287)
||||++++++..+..|+++|+++.+.+.. |....+ .++.||+++||....+.. ...+.+ .-.|+++|
T Consensus 562 ~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~-----~~s~~e------ni~Lp~~L 630 (915)
T PTZ00111 562 CIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNK-----NKAVIE------NINISPSL 630 (915)
T ss_pred EecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCc-----ccCccc------ccCCChHH
Confidence 99999999999999999999999887654 655555 489999999996433211 111111 12588999
Q ss_pred HhccCce-EEeCCCCHHHHHHHHHHHHH
Q 047225 172 LNRIDEV-IVFRQLNKMQLMEIVDIMLK 198 (287)
Q Consensus 172 ~~r~~~~-i~~~~~~~~~~~~il~~~l~ 198 (287)
++|||.+ +.+++++.+.-..|..+.+.
T Consensus 631 LSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 631 FTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred hhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 9999866 77888888777777776664
No 160
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.50 E-value=2.5e-13 Score=124.19 Aligned_cols=159 Identities=14% Similarity=0.204 Sum_probs=107.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc---------------------cchhhhhCCCCCCCccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK---------------------HTVSKFFGSPPGYVGFE 76 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 76 (287)
.+++|+||+|+|||++++.++..+........ +.++..... .+...++|..
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g~e~-le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg------- 282 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSNEEA-LESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGG------- 282 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCCcEE-EecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCC-------
Confidence 47999999999999999999988754322211 111111100 0111122210
Q ss_pred chhhHHHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCC-Cceeec-cceEEEEeecCCchhhhhhccCCchH
Q 047225 77 NGGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDL-KNTIIIMTSNIGDSVIARESILGSDQ 154 (287)
Q Consensus 77 ~~~~~~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~ 154 (287)
...-...+...+++++|+||++.+++.++..|++.|+++.+.... |..+.+ .++++|+|+|+.+.+...... ...
T Consensus 283 -~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~--c~c 359 (506)
T PRK09862 283 -AIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNH--NRC 359 (506)
T ss_pred -ceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCC--CCc
Confidence 012234666677789999999999999999999999999987553 444444 589999999997654422111 333
Q ss_pred HHHHHHHHHHhcCChhHHhccCceEEeCCCCHHH
Q 047225 155 MERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQ 188 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~ 188 (287)
.+..+..|+. .++.++++|||..+.+++++.++
T Consensus 360 ~~~~~~~Y~~-~ls~plLDRfdL~v~v~~~~~~~ 392 (506)
T PRK09862 360 TPEQTLRYLN-RLSGPFLDRFDLSLEIPLPPPGI 392 (506)
T ss_pred CHHHHHHHHh-hCCHhHHhhccEEEEeCCCCHHH
Confidence 5556666644 68899999999999999986543
No 161
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=5.1e-13 Score=120.41 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=113.8
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC----c---eEEeccccccccc--------chhhhhCC
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE----A---MVRIDMSEYMEKH--------TVSKFFGS 68 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~----~---~~~~~~~~~~~~~--------~~~~~~~~ 68 (287)
+.+++.+.+.. ..+.++|+||+|+|||++|+.+|+.+.-... . -..-.|....... .+..+-+
T Consensus 26 ~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~- 103 (397)
T PRK14955 26 RTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDA- 103 (397)
T ss_pred HHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecc-
Confidence 34444444432 2334999999999999999999999843210 0 0001121110000 0000000
Q ss_pred CCCCCcccchhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 69 PPGYVGFENGGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
....+.+....+.+.+.. +++.+++|||+++++...++.|++.+++. .+.+++|++++...
T Consensus 104 -~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep-----------~~~t~~Il~t~~~~--- 168 (397)
T PRK14955 104 -ASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP-----------PPHAIFIFATTELH--- 168 (397)
T ss_pred -cccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC-----------CCCeEEEEEeCChH---
Confidence 011112222233333422 34579999999999999999999999863 12446666664321
Q ss_pred hhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh
Q 047225 145 ARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE 224 (287)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~ 224 (287)
.+.+.+.+|+ ..+.|.|++.+++.+++...+... .+.+++++++.++..
T Consensus 169 ---------------------kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~---------g~~i~~~al~~l~~~ 217 (397)
T PRK14955 169 ---------------------KIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAE---------GISVDADALQLIGRK 217 (397)
T ss_pred ---------------------HhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHH
Confidence 2346788999 899999999999999997766532 467999999999987
Q ss_pred ccCCCCCchhHHHHHHH
Q 047225 225 GYNPSYGARPLRRAIGR 241 (287)
Q Consensus 225 ~~~~~~~~r~l~~~i~~ 241 (287)
+- .+.|.+.+.+++
T Consensus 218 s~---g~lr~a~~~L~k 231 (397)
T PRK14955 218 AQ---GSMRDAQSILDQ 231 (397)
T ss_pred cC---CCHHHHHHHHHH
Confidence 53 234555454443
No 162
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=8e-13 Score=120.53 Aligned_cols=187 Identities=16% Similarity=0.233 Sum_probs=115.3
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC-----ceEE-eccccccccc--chhhhhCCCCCCCcc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE-----AMVR-IDMSEYMEKH--TVSKFFGSPPGYVGF 75 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~-----~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~ 75 (287)
+.++..+... +..+.++|+||+|+|||++|+.+++.+..... ++.. .+|....... ....+.| ....|.
T Consensus 27 ~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g--~~~~gi 103 (451)
T PRK06305 27 AVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDG--ASHRGI 103 (451)
T ss_pred HHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeec--cccCCH
Confidence 3344444432 23345999999999999999999999843211 1110 1111111000 0001111 111222
Q ss_pred cchhhHHHHHH----hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCC
Q 047225 76 ENGGQLTEAVR----HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILG 151 (287)
Q Consensus 76 ~~~~~~~~~~~----~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~ 151 (287)
+....+.+.+. ..++.|++|||+|++....++.|++.+++.. +.+.+|++++...
T Consensus 104 d~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~-----------~~~~~Il~t~~~~---------- 162 (451)
T PRK06305 104 EDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP-----------QHVKFFLATTEIH---------- 162 (451)
T ss_pred HHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC-----------CCceEEEEeCChH----------
Confidence 22223333222 2456899999999999999999999999731 2446777775321
Q ss_pred chHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCC
Q 047225 152 SDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYG 231 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 231 (287)
.+.+.+.+|+ ..+.|++++.+++.+++...+.+. .+.+++++++.++..+. .+
T Consensus 163 --------------kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~e---------g~~i~~~al~~L~~~s~---gd 215 (451)
T PRK06305 163 --------------KIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQE---------GIETSREALLPIARAAQ---GS 215 (451)
T ss_pred --------------hcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CC
Confidence 3457899999 899999999999999887665432 45789999999998753 23
Q ss_pred chhHHHHHHH
Q 047225 232 ARPLRRAIGR 241 (287)
Q Consensus 232 ~r~l~~~i~~ 241 (287)
.|.+...+++
T Consensus 216 lr~a~~~Lek 225 (451)
T PRK06305 216 LRDAESLYDY 225 (451)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 163
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=6.1e-13 Score=122.11 Aligned_cols=199 Identities=22% Similarity=0.326 Sum_probs=129.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||.+|.+++... +..++.+...+.. ...+|.... ..+.++..++....+|+||||+
T Consensus 703 giLLyGppGcGKT~la~a~a~~~---~~~fisvKGPElL-----~KyIGaSEq-----~vR~lF~rA~~a~PCiLFFDEf 769 (952)
T KOG0735|consen 703 GILLYGPPGCGKTLLASAIASNS---NLRFISVKGPELL-----SKYIGASEQ-----NVRDLFERAQSAKPCILFFDEF 769 (952)
T ss_pred ceEEECCCCCcHHHHHHHHHhhC---CeeEEEecCHHHH-----HHHhcccHH-----HHHHHHHHhhccCCeEEEeccc
Confidence 59999999999999999999987 6677777665443 233332111 1256777777777899999999
Q ss_pred ccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|-+ ...+.+.|++-|+.-+ | +..+.++++|.++. .+
T Consensus 770 dSiAPkRGhDsTGVTDRVVNQlLTelDG~E-----g----l~GV~i~aaTsRpd------------------------li 816 (952)
T KOG0735|consen 770 DSIAPKRGHDSTGVTDRVVNQLLTELDGAE-----G----LDGVYILAATSRPD------------------------LI 816 (952)
T ss_pred cccCcccCCCCCCchHHHHHHHHHhhcccc-----c----cceEEEEEecCCcc------------------------cc
Confidence 954 3368888888887421 1 22445555555542 35
Q ss_pred ChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 168 RPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 168 ~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
+|+|+ .|+|..+..++|+..+..+|++..-+.. . --++.-++.++..+ .+++.-++...+..+-..
T Consensus 817 DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~-------~---~~~~vdl~~~a~~T--~g~tgADlq~ll~~A~l~ 884 (952)
T KOG0735|consen 817 DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL-------L---KDTDVDLECLAQKT--DGFTGADLQSLLYNAQLA 884 (952)
T ss_pred CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc-------C---CccccchHHHhhhc--CCCchhhHHHHHHHHHHH
Confidence 67777 7999999999999999999985543321 1 11233456666653 244557888888888777
Q ss_pred HHHHHHHhccCCCCCEEEEEEcCCccEEEEE
Q 047225 246 NLAEIILTGYIQVGDSVTMDCDSGGNVIMYR 276 (287)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 276 (287)
++-+++.... ..+-.-.++.....++....
T Consensus 885 avh~~l~~~~-~~~~~p~~~~~~~~si~~~~ 914 (952)
T KOG0735|consen 885 AVHEILKRED-EEGVVPSIDDASLESIFSDS 914 (952)
T ss_pred HHHHHHHhcC-ccccCCccchhhhhhhhhcc
Confidence 7755544433 33333334444444444433
No 164
>PRK09087 hypothetical protein; Validated
Probab=99.49 E-value=3.8e-13 Score=111.87 Aligned_cols=156 Identities=19% Similarity=0.234 Sum_probs=101.2
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEE
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILF 95 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 95 (287)
+.+.++|+||+|+|||+|++++++.. . ..+++...+. ..+...+.. ++|+|
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~---~--~~~i~~~~~~---------------------~~~~~~~~~---~~l~i 93 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS---D--ALLIHPNEIG---------------------SDAANAAAE---GPVLI 93 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc---C--CEEecHHHcc---------------------hHHHHhhhc---CeEEE
Confidence 33359999999999999999998764 2 2233332211 122222222 48999
Q ss_pred cCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhcc
Q 047225 96 DEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRI 175 (287)
Q Consensus 96 Deid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 175 (287)
||++... ..+..|+.+++.-.. .+..+|++++..+..+. .+.++|.+|+
T Consensus 94 DDi~~~~-~~~~~lf~l~n~~~~----------~g~~ilits~~~p~~~~--------------------~~~~dL~SRl 142 (226)
T PRK09087 94 EDIDAGG-FDETGLFHLINSVRQ----------AGTSLLMTSRLWPSSWN--------------------VKLPDLKSRL 142 (226)
T ss_pred ECCCCCC-CCHHHHHHHHHHHHh----------CCCeEEEECCCChHHhc--------------------cccccHHHHH
Confidence 9999764 234556666553110 12247777766544331 2257899999
Q ss_pred C--ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 176 D--EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 176 ~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
. ..+.+.||+.+++.+++++.+... .+.++++++++|+.... .+.+.+..+++++-
T Consensus 143 ~~gl~~~l~~pd~e~~~~iL~~~~~~~---------~~~l~~ev~~~La~~~~---r~~~~l~~~l~~L~ 200 (226)
T PRK09087 143 KAATVVEIGEPDDALLSQVIFKLFADR---------QLYVDPHVVYYLVSRME---RSLFAAQTIVDRLD 200 (226)
T ss_pred hCCceeecCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHhh---hhHHHHHHHHHHHH
Confidence 5 669999999999999998777541 46899999999999753 23455555555443
No 165
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=9e-13 Score=122.81 Aligned_cols=189 Identities=16% Similarity=0.219 Sum_probs=116.3
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC----ceEEe-ccccccccc--chhhhhCCCCCCCcc
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE----AMVRI-DMSEYMEKH--TVSKFFGSPPGYVGF 75 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~----~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~ 75 (287)
++.++..+.+. +..+.++|+||+|+|||++|+++++.+..... ++..+ +|-...... .+..+-| ....+.
T Consensus 25 v~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idg--as~~~v 101 (563)
T PRK06647 25 VETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDG--ASNTSV 101 (563)
T ss_pred HHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecC--cccCCH
Confidence 34455555443 33335999999999999999999999843211 11111 111111000 0000101 001111
Q ss_pred cchhhHHHHHH----hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCC
Q 047225 76 ENGGQLTEAVR----HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILG 151 (287)
Q Consensus 76 ~~~~~~~~~~~----~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~ 151 (287)
.....+.+.+. .+++.+++|||++.++...++.|++.+++. .+.++||++++...
T Consensus 102 ddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-----------p~~~vfI~~tte~~---------- 160 (563)
T PRK06647 102 QDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-----------PPYIVFIFATTEVH---------- 160 (563)
T ss_pred HHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC-----------CCCEEEEEecCChH----------
Confidence 11122222222 245679999999999999999999999963 23556777764321
Q ss_pred chHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCC
Q 047225 152 SDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYG 231 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 231 (287)
.+.+.+.+|+ ..+.|.+++.+++.+++...+... .+.++++++.+|+..+. .+
T Consensus 161 --------------kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~e---------gi~id~eAl~lLa~~s~---Gd 213 (563)
T PRK06647 161 --------------KLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLED---------QIKYEDEALKWIAYKST---GS 213 (563)
T ss_pred --------------HhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CC
Confidence 2457899999 889999999999988886655431 46789999999998643 34
Q ss_pred chhHHHHHHHH
Q 047225 232 ARPLRRAIGRL 242 (287)
Q Consensus 232 ~r~l~~~i~~~ 242 (287)
+|.+...++++
T Consensus 214 lR~alslLdkl 224 (563)
T PRK06647 214 VRDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHHH
Confidence 56666655543
No 166
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.49 E-value=2.8e-12 Score=103.95 Aligned_cols=193 Identities=21% Similarity=0.253 Sum_probs=126.6
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCc-EE
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPH-SV 92 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i 92 (287)
+.|.+|++|+|..|||||++++++.+.+...+..++.++-.+..+- ..+.+.++..+. -|
T Consensus 82 G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L-------------------p~l~~~Lr~~~~kFI 142 (287)
T COG2607 82 GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL-------------------PDLVELLRARPEKFI 142 (287)
T ss_pred CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH-------------------HHHHHHHhcCCceEE
Confidence 4566799999999999999999999999888888888888776543 356666666554 49
Q ss_pred EEEcCcccccH-HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhh-ccCCchHHHHHHHHHHHhcCChh
Q 047225 93 ILFDEIEKAHR-DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARE-SILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 93 l~iDeid~~~~-~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
||+||+..-+- +.-..|..+++.+- .-.+.|++|.+|+|.-.-.-... +-.++. -+..-.+..++.+ +
T Consensus 143 lFcDDLSFe~gd~~yK~LKs~LeG~v-------e~rP~NVl~YATSNRRHLl~e~~~dn~~~~-~eih~~eaveEKl--S 212 (287)
T COG2607 143 LFCDDLSFEEGDDAYKALKSALEGGV-------EGRPANVLFYATSNRRHLLPEDMKDNEGST-GEIHPSEAVEEKL--S 212 (287)
T ss_pred EEecCCCCCCCchHHHHHHHHhcCCc-------ccCCCeEEEEEecCCcccccHhhhhCCCcc-cccChhHHHHHhh--c
Confidence 99999875433 45556777777432 22345888999999743211000 111111 0001112222333 5
Q ss_pred HHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh--ccCCCCCchhHHHHHHHHHH
Q 047225 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE--GYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 171 l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~--~~~~~~~~r~l~~~i~~~~~ 244 (287)
|-+||+-.+.|+|++.++..+++..+...+ .++++++.++.=+-. .-..+-+.|...+.++.+..
T Consensus 213 lSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~---------~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~~~g 279 (287)
T COG2607 213 LSDRFGLWLSFYPCDQDEYLKIVDHYAKHF---------GLDISDEELHAEALQWATTRGGRSGRVAWQFIRDLAG 279 (287)
T ss_pred hhhhcceeecccCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHHHHh
Confidence 679999999999999999999998887543 455555555444322 22344566888888875543
No 167
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.49 E-value=2e-12 Score=116.94 Aligned_cols=184 Identities=19% Similarity=0.213 Sum_probs=110.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC--CCceEEecccccccccch-----hhhhCCCCCCCcccch---hhHHHHHHh-
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS--KEAMVRIDMSEYMEKHTV-----SKFFGSPPGYVGFENG---GQLTEAVRH- 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~- 87 (287)
+++++||||||||++++.+++.+... ...+++++|......... ..+.+......+.... ..+.+.+..
T Consensus 57 ~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 136 (394)
T PRK00411 57 NVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDER 136 (394)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 69999999999999999999987433 467888998765543211 1122212222222211 123334433
Q ss_pred CCcEEEEEcCccccc----HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 88 RPHSVILFDEIEKAH----RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 88 ~~~~il~iDeid~~~----~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
+...+|+|||+|.+. .+.+..|.+.++.. .+ .++.+|+++|.....
T Consensus 137 ~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-----~~-----~~v~vI~i~~~~~~~-------------------- 186 (394)
T PRK00411 137 DRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-----PG-----ARIGVIGISSDLTFL-------------------- 186 (394)
T ss_pred CCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-----CC-----CeEEEEEEECCcchh--------------------
Confidence 334689999999875 34555555554431 01 145677777753211
Q ss_pred HhcCChhHHhccC-ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 164 RRRFRPEFLNRID-EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 164 ~~~~~~~l~~r~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
..+.+.+.+|+. ..+.|+|++.+++.+++...+... + ....+++++++.++..+.....++|..-+.+.
T Consensus 187 -~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~---~----~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 187 -YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG---F----YPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred -hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh---c----ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 124566777774 459999999999999997776321 1 12357899999998765332233333333343
No 168
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=6.7e-13 Score=124.38 Aligned_cols=138 Identities=30% Similarity=0.420 Sum_probs=100.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||.||+++|.+- +.|++.++.+++.+- +.| .|....+.++...+...++++|+||+
T Consensus 346 GvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFvE~-----~~g-----~~asrvr~lf~~ar~~aP~iifidei 412 (774)
T KOG0731|consen 346 GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFVEM-----FVG-----VGASRVRDLFPLARKNAPSIIFIDEI 412 (774)
T ss_pred ceEEECCCCCcHHHHHHHHhccc---CCceeeechHHHHHH-----hcc-----cchHHHHHHHHHhhccCCeEEEeccc
Confidence 49999999999999999999988 899999999988753 111 12222357788888877799999999
Q ss_pred cccc------------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 99 EKAH------------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 99 d~~~------------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
|... .+-...|.+++-+- +|-... .+++|+++||... .
T Consensus 413 da~~~~r~G~~~~~~~~e~e~tlnQll~em-----Dgf~~~-~~vi~~a~tnr~d------------------------~ 462 (774)
T KOG0731|consen 413 DAVGRKRGGKGTGGGQDEREQTLNQLLVEM-----DGFETS-KGVIVLAATNRPD------------------------I 462 (774)
T ss_pred ccccccccccccCCCChHHHHHHHHHHHHh-----cCCcCC-CcEEEEeccCCcc------------------------c
Confidence 9432 22334455554431 111111 3568889999863 3
Q ss_pred CChhHH--hccCceEEeCCCCHHHHHHHHHHHHHH
Q 047225 167 FRPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKE 199 (287)
Q Consensus 167 ~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~ 199 (287)
+.++|+ .|||..|.++.|+.....+|++.++..
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~ 497 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK 497 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhc
Confidence 456666 899999999999999999999777653
No 169
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.49 E-value=6.9e-13 Score=116.08 Aligned_cols=156 Identities=19% Similarity=0.248 Sum_probs=101.9
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCCCCceE---Eecccccccc--------c-----------chhhhhCCCCCC-
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGSKEAMV---RIDMSEYMEK--------H-----------TVSKFFGSPPGY- 72 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~---~~~~~~~~~~--------~-----------~~~~~~~~~~~~- 72 (287)
..+.+++.|+.||||||++|+|+..|... ..+ .++|...... . ....+...+.+.
T Consensus 37 ~iggvLI~G~kGtaKSt~~Rala~LLp~~--~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~at 114 (423)
T COG1239 37 QIGGALIAGEKGTAKSTLARALADLLPEI--EVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGAT 114 (423)
T ss_pred ccceeEEecCCCccHHHHHHHHHHhCCcc--ceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccc
Confidence 35679999999999999999999999432 221 1122111110 0 000011111111
Q ss_pred ----Ccccchh-------h--HHHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCcee-ecCCCceeecc-ceEEEEee
Q 047225 73 ----VGFENGG-------Q--LTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRV-TDGKGQTVDLK-NTIIIMTS 137 (287)
Q Consensus 73 ----~~~~~~~-------~--~~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~-~~~~g~~i~~~-~~~iI~t~ 137 (287)
+|.-... . -...+...+++|++|||++.++..+++.|+..++.|.. ...+|..+.++ ++++|+|+
T Consensus 115 eDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTm 194 (423)
T COG1239 115 EDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTM 194 (423)
T ss_pred hhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeec
Confidence 1100000 0 01234445679999999999999999999999999843 33468888886 89999999
Q ss_pred cCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCC-HHHHHHHHHHH
Q 047225 138 NIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLN-KMQLMEIVDIM 196 (287)
Q Consensus 138 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~-~~~~~~il~~~ 196 (287)
||... .+.|.|++||+..+.+.++. .++..+|+...
T Consensus 195 NPEeG-----------------------eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~ 231 (423)
T COG1239 195 NPEEG-----------------------ELRPQLLDRFGLEVDTHYPLDLEERVEIIRRR 231 (423)
T ss_pred Ccccc-----------------------ccchhhHhhhcceeeccCCCCHHHHHHHHHHH
Confidence 99633 56899999999888887766 66666666543
No 170
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=2.2e-12 Score=121.03 Aligned_cols=187 Identities=16% Similarity=0.225 Sum_probs=115.1
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC---c-eE---Eeccccccccc--------chhhhhCC
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE---A-MV---RIDMSEYMEKH--------TVSKFFGS 68 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~---~-~~---~~~~~~~~~~~--------~~~~~~~~ 68 (287)
..++..+.+. +-.+.++|+||+|||||++|+.+|+.+.-... + +. .-.|....... .+..+-+
T Consensus 26 ~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~- 103 (620)
T PRK14954 26 HTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDA- 103 (620)
T ss_pred HHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCCCCeEEecc-
Confidence 3455555443 33335999999999999999999999833110 0 00 01121110000 0000100
Q ss_pred CCCCCcccchhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 69 PPGYVGFENGGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
....+.+....+.+.+.. +.+.|++|||+|++....++.|++.+++.. +.+++|++++...
T Consensus 104 -~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp-----------~~tv~IL~t~~~~--- 168 (620)
T PRK14954 104 -ASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPP-----------PHAIFIFATTELH--- 168 (620)
T ss_pred -cccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCC-----------CCeEEEEEeCChh---
Confidence 111122222333333322 345799999999999999999999999731 2446666664321
Q ss_pred hhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh
Q 047225 145 ARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE 224 (287)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~ 224 (287)
.+.+.+.+|+ ..+.|.+++.+++..++...+... .+.+++++++.++..
T Consensus 169 ---------------------kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~e---------gi~I~~eal~~La~~ 217 (620)
T PRK14954 169 ---------------------KIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAE---------GIQIDADALQLIARK 217 (620)
T ss_pred ---------------------hhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHH
Confidence 3346789999 999999999999999987666532 457899999999887
Q ss_pred ccCCCCCchhHHHHHHH
Q 047225 225 GYNPSYGARPLRRAIGR 241 (287)
Q Consensus 225 ~~~~~~~~r~l~~~i~~ 241 (287)
+- .++|.+...+++
T Consensus 218 s~---Gdlr~al~eLeK 231 (620)
T PRK14954 218 AQ---GSMRDAQSILDQ 231 (620)
T ss_pred hC---CCHHHHHHHHHH
Confidence 53 334555554443
No 171
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.47 E-value=8.8e-13 Score=122.36 Aligned_cols=158 Identities=14% Similarity=0.132 Sum_probs=101.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEe---cccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRI---DMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILF 95 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 95 (287)
|++|+|+||||||++++.+++..... .++.. ++..... ..+..+ ..|.. ..-...+.....+++++
T Consensus 238 ~vLL~G~pGtGKs~lar~l~~~~~r~--~~~~~~~~~~~~l~~-----~~~~~~--~~g~~--~~~~G~l~~A~~Gil~i 306 (509)
T smart00350 238 NILLLGDPGTAKSQLLKYVEKTAPRA--VYTTGKGSSAVGLTA-----AVTRDP--ETREF--TLEGGALVLADNGVCCI 306 (509)
T ss_pred eEEEeCCCChhHHHHHHHHHHHcCcc--eEcCCCCCCcCCccc-----cceEcc--CcceE--EecCccEEecCCCEEEE
Confidence 79999999999999999999987321 22211 1111110 000000 00000 00012233345679999
Q ss_pred cCcccccHHHHHHHHHhhcCceeecCC-Cceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHh
Q 047225 96 DEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLN 173 (287)
Q Consensus 96 Deid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (287)
||+|++++..+..|+++|+++.++... |....++ ++.+|+|+||....+.. ...+.+ .-.+++++++
T Consensus 307 DEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~-----~~~~~~------n~~l~~~lLs 375 (509)
T smart00350 307 DEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDP-----KLTPEE------NIDLPAPILS 375 (509)
T ss_pred echhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCC-----CcChhh------ccCCChHHhC
Confidence 999999999999999999998876653 6555554 78999999986432211 000011 1158899999
Q ss_pred ccCce-EEeCCCCHHHHHHHHHHHHH
Q 047225 174 RIDEV-IVFRQLNKMQLMEIVDIMLK 198 (287)
Q Consensus 174 r~~~~-i~~~~~~~~~~~~il~~~l~ 198 (287)
|||.. +...+++.+.-.+|+.+.+.
T Consensus 376 RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 376 RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99865 66688998888888877653
No 172
>PRK04132 replication factor C small subunit; Provisional
Probab=99.47 E-value=9.6e-13 Score=126.38 Aligned_cols=155 Identities=20% Similarity=0.282 Sum_probs=116.3
Q ss_pred EEEec--cCCChHHHHHHHHHHHhcCC--CCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh-----CCc
Q 047225 20 FLFTG--PTGVGKTELANALAFEYFGS--KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH-----RPH 90 (287)
Q Consensus 20 ill~G--p~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 90 (287)
-+..| |++.||||+|+++|+.+++. +..++.+|.++......+...+. .+... .++
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk---------------~~a~~~~~~~~~~ 631 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVK---------------EFARTKPIGGASF 631 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHH---------------HHHhcCCcCCCCC
Confidence 45668 99999999999999998654 45788999987543322222221 11111 135
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
.|++|||+|+++.+.|++|++.++... .++.||++||... .+.++
T Consensus 632 KVvIIDEaD~Lt~~AQnALLk~lEep~-----------~~~~FILi~N~~~------------------------kIi~t 676 (846)
T PRK04132 632 KIIFLDEADALTQDAQQALRRTMEMFS-----------SNVRFILSCNYSS------------------------KIIEP 676 (846)
T ss_pred EEEEEECcccCCHHHHHHHHHHhhCCC-----------CCeEEEEEeCChh------------------------hCchH
Confidence 799999999999999999999999731 3567999998753 34578
Q ss_pred HHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 171 l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
+.||| ..+.|+|++.+++.+.+...+.+. .+.++++++..++..+. ++++++++
T Consensus 677 IrSRC-~~i~F~~ls~~~i~~~L~~I~~~E---------gi~i~~e~L~~Ia~~s~------GDlR~AIn 730 (846)
T PRK04132 677 IQSRC-AIFRFRPLRDEDIAKRLRYIAENE---------GLELTEEGLQAILYIAE------GDMRRAIN 730 (846)
T ss_pred Hhhhc-eEEeCCCCCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHHcC------CCHHHHHH
Confidence 99999 999999999999999887766532 35688999999998764 46666665
No 173
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=2e-12 Score=121.85 Aligned_cols=176 Identities=16% Similarity=0.251 Sum_probs=109.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCce-EEecccccccccch-----hhhhC-CCCCCCcccchhhHHHHHHh---
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAM-VRIDMSEYMEKHTV-----SKFFG-SPPGYVGFENGGQLTEAVRH--- 87 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~-~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~--- 87 (287)
+.++|+||+|+|||++|+.+|+.+.-....- ..-.|+.......+ .+++. ......+.+..+.+.+.+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~ 118 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPV 118 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChh
Confidence 3699999999999999999999984321110 00112210000000 00000 00111222223333333332
Q ss_pred -CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 88 -RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 88 -~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
+++.|++|||+|+++.+.++.|++.+++.. ..++||++++... .
T Consensus 119 ~~~~KViIIDEad~Lt~~a~naLLK~LEePp-----------~~tvfIL~t~~~~------------------------~ 163 (620)
T PRK14948 119 QARWKVYVIDECHMLSTAAFNALLKTLEEPP-----------PRVVFVLATTDPQ------------------------R 163 (620)
T ss_pred cCCceEEEEECccccCHHHHHHHHHHHhcCC-----------cCeEEEEEeCChh------------------------h
Confidence 345799999999999999999999999631 2456777765322 2
Q ss_pred CChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHH
Q 047225 167 FRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
+.+.+.+|| ..+.|++++.+++...+...+.+. .+.++++++..++..+. .+.|.+.+.+++
T Consensus 164 llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~ke---------gi~is~~al~~La~~s~---G~lr~A~~lLek 225 (620)
T PRK14948 164 VLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKE---------SIEIEPEALTLVAQRSQ---GGLRDAESLLDQ 225 (620)
T ss_pred hhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHHcC---CCHHHHHHHHHH
Confidence 346899999 899999999999888876655432 35688899998887653 334555555554
No 174
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.46 E-value=1.1e-12 Score=124.76 Aligned_cols=169 Identities=25% Similarity=0.381 Sum_probs=108.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||++++.++..+ +.+++.++++++... ..+. +......++........+|+||||+
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~~-----~~g~-----~~~~~~~~f~~a~~~~P~IifIDEi 253 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM-----FVGV-----GASRVRDMFEQAKKAAPCIIFIDEI 253 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHHh-----hhcc-----cHHHHHHHHHHHHhcCCcEEEehhH
Confidence 49999999999999999999988 678888888765432 1111 1111234455555556689999999
Q ss_pred ccccH-----------H---HHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 99 EKAHR-----------D---VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 99 d~~~~-----------~---~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|.+.. . .++.|+..++. +. ....+++|++||.+.
T Consensus 254 D~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg--~~-------~~~~vivIaaTN~p~----------------------- 301 (644)
T PRK10733 254 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDG--FE-------GNEGIIVIAATNRPD----------------------- 301 (644)
T ss_pred hhhhhccCCCCCCCchHHHHHHHHHHHhhhc--cc-------CCCCeeEEEecCChh-----------------------
Confidence 97622 1 33344433432 11 013568889999753
Q ss_pred hcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 165 RRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 165 ~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
.+++++++ ||+..+.++.|+.++..+|++.++.+.. ...+++ +..++. ...+++..++.+.++.+
T Consensus 302 -~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~-------l~~~~d---~~~la~--~t~G~sgadl~~l~~eA 368 (644)
T PRK10733 302 -VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-------LAPDID---AAIIAR--GTPGFSGADLANLVNEA 368 (644)
T ss_pred -hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCC-------CCCcCC---HHHHHh--hCCCCCHHHHHHHHHHH
Confidence 34677874 9999999999999999999987775421 111121 223333 23455666777777665
Q ss_pred HHH
Q 047225 243 LED 245 (287)
Q Consensus 243 ~~~ 245 (287)
...
T Consensus 369 a~~ 371 (644)
T PRK10733 369 ALF 371 (644)
T ss_pred HHH
Confidence 543
No 175
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=1.6e-12 Score=114.51 Aligned_cols=126 Identities=22% Similarity=0.360 Sum_probs=94.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh-CCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH-RPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~iDe 97 (287)
..+|+||||||||+++.++|+.+ +..++-++.++..+.. .+...+.. .+.+||+|+|
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~-------------------dLr~LL~~t~~kSIivIED 294 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDS-------------------DLRHLLLATPNKSILLIED 294 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCcH-------------------HHHHHHHhCCCCcEEEEee
Confidence 49999999999999999999999 7788878877666543 23333333 3457999999
Q ss_pred cccc------------------cHHHHHHHHHhhcCceeecCCCceeec-cceEEEEeecCCchhhhhhccCCchHHHHH
Q 047225 98 IEKA------------------HRDVLNVMLQLLDDGRVTDGKGQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERG 158 (287)
Q Consensus 98 id~~------------------~~~~~~~L~~~l~~~~~~~~~g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~ 158 (287)
||.. ..-.+..|+.+++. -+-.. ..-+||+|||..
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG--------lwSscg~ERIivFTTNh~------------------ 348 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG--------LWSSCGDERIIVFTTNHK------------------ 348 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhcc--------ccccCCCceEEEEecCCh------------------
Confidence 9943 01234556666652 22222 144799999974
Q ss_pred HHHHHHhcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHH
Q 047225 159 VAEELRRRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLK 198 (287)
Q Consensus 159 ~~~~~~~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~ 198 (287)
++++|+|++ |+|..|++..++...++.++..+|.
T Consensus 349 ------EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 349 ------EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred ------hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 367899997 9999999999999999999988874
No 176
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.2e-12 Score=121.55 Aligned_cols=174 Identities=18% Similarity=0.298 Sum_probs=109.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCC-----CceEEe-ccccccccc--chhhhhCCCCCCCcccchhhHHHHHHh---
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSK-----EAMVRI-DMSEYMEKH--TVSKFFGSPPGYVGFENGGQLTEAVRH--- 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~-----~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 87 (287)
.++|+||+|+|||++++.+++.+.-.. ..+-.+ +|..+.... .+..+-+ .+..+.+....+.+.+..
T Consensus 41 ayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~--~~~~~vd~Ir~li~~~~~~P~ 118 (614)
T PRK14971 41 AYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDA--ASNNSVDDIRNLIEQVRIPPQ 118 (614)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecc--cccCCHHHHHHHHHHHhhCcc
Confidence 489999999999999999999883111 111000 011111000 0001100 011111111222222222
Q ss_pred -CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 88 -RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 88 -~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
+++.|++|||++.++...++.|++.+++. ...++||++++... .
T Consensus 119 ~~~~KVvIIdea~~Ls~~a~naLLK~LEep-----------p~~tifIL~tt~~~------------------------k 163 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-----------PSYAIFILATTEKH------------------------K 163 (614)
T ss_pred cCCcEEEEEECcccCCHHHHHHHHHHHhCC-----------CCCeEEEEEeCCch------------------------h
Confidence 34679999999999999999999999973 12456777775322 3
Q ss_pred CChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 167 FRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
+.+.+.+|+ ..+.|.+++.+++..++...+.+. .+.+++++++.|+..+. .++|.+...++++
T Consensus 164 Il~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~e---------gi~i~~~al~~La~~s~---gdlr~al~~Lekl 226 (614)
T PRK14971 164 ILPTILSRC-QIFDFNRIQVADIVNHLQYVASKE---------GITAEPEALNVIAQKAD---GGMRDALSIFDQV 226 (614)
T ss_pred chHHHHhhh-heeecCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHHHHHHHHHHH
Confidence 457899999 889999999999999997766542 46789999999988753 3445555555443
No 177
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.45 E-value=3.2e-12 Score=124.99 Aligned_cols=199 Identities=16% Similarity=0.223 Sum_probs=123.0
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCC-------CCceEEecccccccccchhhhhCCCCCCCcc
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGS-------KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGF 75 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (287)
++++...+....+ ++++|+||||||||++++.+|..+... +.+++.++++..... ..+.|-
T Consensus 188 i~~~~~~L~r~~~--~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag----------~~~~ge 255 (821)
T CHL00095 188 IERVIQILGRRTK--NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAG----------TKYRGE 255 (821)
T ss_pred HHHHHHHHccccc--CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhcc----------CCCccH
Confidence 3444444444333 368999999999999999999987422 245555555433211 111221
Q ss_pred cc--hhhHHHHHHhCCcEEEEEcCccccc--------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhh
Q 047225 76 EN--GGQLTEAVRHRPHSVILFDEIEKAH--------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIA 145 (287)
Q Consensus 76 ~~--~~~~~~~~~~~~~~il~iDeid~~~--------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~ 145 (287)
.+ ...+++.+...+..||||||++.+- .+..+.|.+.+..| ...+|++|++..
T Consensus 256 ~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-------------~l~~IgaTt~~e---- 318 (821)
T CHL00095 256 FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-------------ELQCIGATTLDE---- 318 (821)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-------------CcEEEEeCCHHH----
Confidence 11 1234444455556799999998542 24567777777765 345787777532
Q ss_pred hhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 146 RESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
+..+.+ ..+.|.+|| ..|.+++++.++...|+......+.... .+.++++++..++..+
T Consensus 319 -------------y~~~ie--~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~-----~v~i~deal~~i~~ls 377 (821)
T CHL00095 319 -------------YRKHIE--KDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHH-----NLSISDKALEAAAKLS 377 (821)
T ss_pred -------------HHHHHh--cCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHh
Confidence 111111 257899999 7899999999999999987766655443 3458999999998875
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHHHH
Q 047225 226 YNPSYGARPLRRAIGRLLEDNLAEIIL 252 (287)
Q Consensus 226 ~~~~~~~r~l~~~i~~~~~~~~~~~~~ 252 (287)
..+ .+-|.+....-+++..+-+...+
T Consensus 378 ~~y-i~~r~lPdkaidlld~a~a~~~~ 403 (821)
T CHL00095 378 DQY-IADRFLPDKAIDLLDEAGSRVRL 403 (821)
T ss_pred hcc-CccccCchHHHHHHHHHHHHHHh
Confidence 322 22234433333355555554444
No 178
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.45 E-value=7.3e-13 Score=113.03 Aligned_cols=198 Identities=18% Similarity=0.264 Sum_probs=121.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||+|||||.+++..-..+.........++++.......+...+........ +..... ..+...|+||||+
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~----~~~~gP-~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRR----GRVYGP-PGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECT----TEEEEE-ESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCC----CCCCCC-CCCcEEEEEeccc
Confidence 69999999999999999887776544434556777776665555544432211100 011100 1234569999999
Q ss_pred ccccHH------HHHHHHHhhcCceeecCC-CceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhH
Q 047225 99 EKAHRD------VLNVMLQLLDDGRVTDGK-GQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEF 171 (287)
Q Consensus 99 d~~~~~------~~~~L~~~l~~~~~~~~~-g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (287)
+...++ ..+.|+++++.+.+.+.+ ..+....++.++++++++... ..+++.|
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr---------------------~~is~R~ 168 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGR---------------------NPISPRF 168 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-----------------------SHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCC---------------------CCCChHH
Confidence 965443 568999999999888764 456677899999999885421 1356889
Q ss_pred HhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEE-EeChhHHH-------HHHHh------ccCCCCCchhHHH
Q 047225 172 LNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMEL-TVTHTFKK-------KLIEE------GYNPSYGARPLRR 237 (287)
Q Consensus 172 ~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~-~i~~~~~~-------~l~~~------~~~~~~~~r~l~~ 237 (287)
+++| ..+.+++|+.+++..|....+........ ....+ .+.+.++. .+... ...+-++.|++.+
T Consensus 169 ~r~f-~i~~~~~p~~~sl~~If~~il~~~l~~~~-f~~~v~~~~~~lv~ati~ly~~i~~~~~ptp~k~HY~FnlRDlsr 246 (272)
T PF12775_consen 169 LRHF-NILNIPYPSDESLNTIFSSILQSHLKNGG-FPEDVQKLADKLVQATIELYQKIRQQFLPTPSKPHYTFNLRDLSR 246 (272)
T ss_dssp HTTE-EEEE----TCCHHHHHHHHHHHHHTCHTT-SSGGGCCCHHHHHHHHHHHHHHHHHHS-TTTTCTTTTSHHHHHHH
T ss_pred hhhe-EEEEecCCChHHHHHHHHHHHhhhcccCC-CChHHHHHHHHHHHHHHHHHHhhhcccCCCCccceeeccHHHHHH
Confidence 9999 99999999999999999888865422110 00000 11122222 22211 1234678999999
Q ss_pred HHHHHHH
Q 047225 238 AIGRLLE 244 (287)
Q Consensus 238 ~i~~~~~ 244 (287)
+++.++.
T Consensus 247 v~qGil~ 253 (272)
T PF12775_consen 247 VFQGILL 253 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987655
No 179
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.44 E-value=3.3e-12 Score=103.59 Aligned_cols=157 Identities=20% Similarity=0.289 Sum_probs=98.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCC----CceE-Eecccccccccch-hhhhCCCCCCCcccchhhHHHHHHh----
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSK----EAMV-RIDMSEYMEKHTV-SKFFGSPPGYVGFENGGQLTEAVRH---- 87 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---- 87 (287)
+.++|+||+|+|||++++.+++.+.... .++. ..+|......... ...+.......+.+....+.+.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCccc
Confidence 4699999999999999999999984321 1110 0001100000000 0000000011122222223343333
Q ss_pred CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 88 RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 88 ~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
+++.+++|||+|+++...++.|+..+++.. ++..+|++++.. . .+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~-----------~~~~~il~~~~~-~-----------------------~l 139 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPP-----------PNTLFILITPSP-E-----------------------KL 139 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCC-----------CCeEEEEEECCh-H-----------------------hC
Confidence 445799999999999999999999998731 245677776532 1 34
Q ss_pred ChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 168 RPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 168 ~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
.+++.+|+ ..+.|+|++.+++.+++... + ++++++++++..+
T Consensus 140 ~~~i~sr~-~~~~~~~~~~~~~~~~l~~~-----------g----i~~~~~~~i~~~~ 181 (188)
T TIGR00678 140 LPTIRSRC-QVLPFPPLSEEALLQWLIRQ-----------G----ISEEAAELLLALA 181 (188)
T ss_pred hHHHHhhc-EEeeCCCCCHHHHHHHHHHc-----------C----CCHHHHHHHHHHc
Confidence 57899999 89999999999998888443 2 5788888888764
No 180
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-12 Score=112.55 Aligned_cols=179 Identities=19% Similarity=0.305 Sum_probs=118.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||.+|+++|++. +..++-+.++...+. .||..... ...++-....-.++++||||+
T Consensus 129 GiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt~K-----WfgE~eKl-----v~AvFslAsKl~P~iIFIDEv 195 (386)
T KOG0737|consen 129 GILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLTSK-----WFGEAQKL-----VKAVFSLASKLQPSIIFIDEV 195 (386)
T ss_pred cceecCCCCchHHHHHHHHHHHc---CCCcceeeccccchh-----hHHHHHHH-----HHHHHhhhhhcCcceeehhhH
Confidence 59999999999999999999998 677888888776653 23221111 123344444445589999999
Q ss_pred cccc-------HHHHH----HHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKAH-------RDVLN----VMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~~-------~~~~~----~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|-+- .+... .+..+++ |-.+. .+. .++|..+||.+.+ +
T Consensus 196 ds~L~~R~s~dHEa~a~mK~eFM~~WD-Gl~s~-~~~-----rVlVlgATNRP~D------------------------l 244 (386)
T KOG0737|consen 196 DSFLGQRRSTDHEATAMMKNEFMALWD-GLSSK-DSE-----RVLVLGATNRPFD------------------------L 244 (386)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHhc-cccCC-CCc-----eEEEEeCCCCCcc------------------------H
Confidence 9442 22222 2223332 21111 111 2567788998754 3
Q ss_pred ChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHH
Q 047225 168 RPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNL 247 (287)
Q Consensus 168 ~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~ 247 (287)
..++++|++..+.++-|+.+...+|++-.|.... ...+++ +..++.. ..+++.++++..+..+.....
T Consensus 245 DeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~-------~e~~vD---~~~iA~~--t~GySGSDLkelC~~Aa~~~i 312 (386)
T KOG0737|consen 245 DEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEK-------LEDDVD---LDEIAQM--TEGYSGSDLKELCRLAALRPI 312 (386)
T ss_pred HHHHHHhCcceeeeCCCchhhHHHHHHHHhcccc-------cCcccC---HHHHHHh--cCCCcHHHHHHHHHHHhHhHH
Confidence 5789999999999999999999999988886431 111222 3445544 345677999999998888888
Q ss_pred HHHHHh
Q 047225 248 AEIILT 253 (287)
Q Consensus 248 ~~~~~~ 253 (287)
.+++-+
T Consensus 313 re~~~~ 318 (386)
T KOG0737|consen 313 RELLVS 318 (386)
T ss_pred HHHHHh
Confidence 665444
No 181
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.43 E-value=1.7e-13 Score=124.29 Aligned_cols=241 Identities=12% Similarity=0.143 Sum_probs=147.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhH---HHHHHhCCcEEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQL---TEAVRHRPHSVIL 94 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~il~ 94 (287)
.|+|++|.||+|||.+.++.+..++. . ++.....-+....-.....+. +++.+ ..++...+.+|.+
T Consensus 379 inv~iVGDPgt~KSQfLk~v~~fsPR---~-vYtsGkaSSaAGLTaaVvkD~-------esgdf~iEAGALmLADnGICC 447 (764)
T KOG0480|consen 379 INVCIVGDPGTGKSQFLKAVCAFSPR---S-VYTSGKASSAAGLTAAVVKDE-------ESGDFTIEAGALMLADNGICC 447 (764)
T ss_pred ceEEEeCCCCccHHHHHHHHhccCCc---c-eEecCcccccccceEEEEecC-------CCCceeeecCcEEEccCceEE
Confidence 47999999999999999999987732 1 122111111110000011111 11121 3455666778999
Q ss_pred EcCcccccHHHHHHHHHhhcCceeecCC-Cceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHH
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFL 172 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (287)
|||+|+|+...+.+|.+.|++..+++.+ |..-.++ ...|++++||-..-..+. ..+.+. =.|+++++
T Consensus 448 IDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~---------ktl~eN--i~msApim 516 (764)
T KOG0480|consen 448 IDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRK---------KTLREN--INMSAPIM 516 (764)
T ss_pred echhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccc---------cchhhh--cCCCchhh
Confidence 9999999999999999999999988886 6555554 678889999855443331 112111 15889999
Q ss_pred hccCce-EEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcE-EEeCh-hHHHHHH-HhccCCCCCchhHHHHHHHHHHHHHH
Q 047225 173 NRIDEV-IVFRQLNKMQLMEIVDIMLKEIYERLEAKNME-LTVTH-TFKKKLI-EEGYNPSYGARPLRRAIGRLLEDNLA 248 (287)
Q Consensus 173 ~r~~~~-i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~-~~i~~-~~~~~l~-~~~~~~~~~~r~l~~~i~~~~~~~~~ 248 (287)
+|||-+ |.+..+++..=..|..+.+.. .......... -.++- .+..||. ...+.|..+...-+..++....
T Consensus 517 SRFDL~FiLlD~~nE~~D~~ia~hIld~-h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~~lve~Y~~---- 591 (764)
T KOG0480|consen 517 SRFDLFFILLDDCNEVVDYAIARHILDL-HRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASEMLVEKYKG---- 591 (764)
T ss_pred hhhcEEEEEecCCchHHHHHHHHHHHHH-hccccccccccccccHHHHHHHHHHHHhcCccccHHHHHHHHHHHHH----
Confidence 999955 888999988888888877764 2222111111 12233 3333332 1245555554333333333222
Q ss_pred HHHHhc-cCCCCCEEEEEEcCCccEEEEEecCCcccccc
Q 047225 249 EIILTG-YIQVGDSVTMDCDSGGNVIMYRHRNGSMTVCA 286 (287)
Q Consensus 249 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 286 (287)
...+. +-....+++|++++.++.+++.++.+.++++.
T Consensus 592 -lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~d 629 (764)
T KOG0480|consen 592 -LRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRD 629 (764)
T ss_pred -HHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhh
Confidence 11111 11225688999999999999998888877653
No 182
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.43 E-value=2.8e-12 Score=114.61 Aligned_cols=139 Identities=16% Similarity=0.277 Sum_probs=87.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccch-----hh--hhCCCCCCCcccchhhHHHHHHh---
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTV-----SK--FFGSPPGYVGFENGGQLTEAVRH--- 87 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~--- 87 (287)
+.++|+||+|+|||++|+.+|+.+.-.... ...|..-...... .+ ++.......+..+.+.+.+.+..
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~ 114 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPS 114 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcc
Confidence 359999999999999999999987432211 0112111000000 00 01001111222233444444433
Q ss_pred -CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 88 -RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 88 -~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
+++.|++|||+|++++..++.|++.+++.. ++.++|++++... .
T Consensus 115 ~~~~kViiIDead~m~~~aanaLLk~LEep~-----------~~~~fIL~a~~~~------------------------~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERAANALLKAVEEPP-----------PRTVWLLCAPSPE------------------------D 159 (394)
T ss_pred cCCcEEEEEechhhcCHHHHHHHHHHhhcCC-----------CCCeEEEEECChH------------------------H
Confidence 345799999999999999999999999731 2334555554321 3
Q ss_pred CChhHHhccCceEEeCCCCHHHHHHHHH
Q 047225 167 FRPEFLNRIDEVIVFRQLNKMQLMEIVD 194 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~~~~~~~il~ 194 (287)
+.|.+.||| ..+.|+||+.+++.+++.
T Consensus 160 llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 160 VLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred ChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 458899999 899999999999888875
No 183
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.6e-13 Score=112.86 Aligned_cols=134 Identities=28% Similarity=0.444 Sum_probs=99.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+|+||||||.||+++|+.. +..|..+-.++.. +..+|..+.. .+.++........+|+|||||
T Consensus 221 GVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGseLi-----QkylGdGpkl-----vRqlF~vA~e~apSIvFiDEI 287 (440)
T KOG0726|consen 221 GVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSELI-----QKYLGDGPKL-----VRELFRVAEEHAPSIVFIDEI 287 (440)
T ss_pred eeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHHHH-----HHHhccchHH-----HHHHHHHHHhcCCceEEeehh
Confidence 59999999999999999999877 5555555555443 3444433332 367888888888899999999
Q ss_pred ccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.. ..++|..++.+++.-.-..+. .++-+|+++|.-. .+
T Consensus 288 dAiGtKRyds~SggerEiQrtmLELLNQldGFdsr------gDvKvimATnrie------------------------~L 337 (440)
T KOG0726|consen 288 DAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR------GDVKVIMATNRIE------------------------TL 337 (440)
T ss_pred hhhccccccCCCccHHHHHHHHHHHHHhccCcccc------CCeEEEEeccccc------------------------cc
Confidence 943 446888888888763322221 3678999999753 35
Q ss_pred ChhHH--hccCceEEeCCCCHHHHHHHHHH
Q 047225 168 RPEFL--NRIDEVIVFRQLNKMQLMEIVDI 195 (287)
Q Consensus 168 ~~~l~--~r~~~~i~~~~~~~~~~~~il~~ 195 (287)
+|+|+ .|+|..|.|+-|+....+.|+..
T Consensus 338 DPaLiRPGrIDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 338 DPALIRPGRIDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred CHhhcCCCccccccccCCCchhhhceeEEE
Confidence 67777 79999999999999998888843
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.42 E-value=5.1e-12 Score=122.49 Aligned_cols=175 Identities=27% Similarity=0.337 Sum_probs=114.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||++++++++.+ +.+++.+++.+..... .| .. ......+++.......++|||||+
T Consensus 214 giLL~GppGtGKT~laraia~~~---~~~~i~i~~~~i~~~~-----~g----~~-~~~l~~lf~~a~~~~p~il~iDEi 280 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLAKAVANEA---GAYFISINGPEIMSKY-----YG----ES-EERLREIFKEAEENAPSIIFIDEI 280 (733)
T ss_pred eEEEECCCCCChHHHHHHHHHHh---CCeEEEEecHHHhccc-----cc----HH-HHHHHHHHHHHHhcCCcEEEeehh
Confidence 59999999999999999999998 5677888776543221 00 00 001234555555555589999999
Q ss_pred cccc-----------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKAH-----------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~~-----------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+. ..+++.|+++++.-.- ...+++|+++|... .+
T Consensus 281 d~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~---------~~~vivI~atn~~~------------------------~l 327 (733)
T TIGR01243 281 DAIAPKREEVTGEVEKRVVAQLLTLMDGLKG---------RGRVIVIGATNRPD------------------------AL 327 (733)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhhcccc---------CCCEEEEeecCChh------------------------hc
Confidence 8652 3466778888764210 12456777888653 23
Q ss_pred ChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 168 RPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 168 ~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
++++.+ ||+..+.+++|+.++..+|++..... ..+ -.+..++.++..+ .++...++...+..+...
T Consensus 328 d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~---------~~l-~~d~~l~~la~~t--~G~~gadl~~l~~~a~~~ 395 (733)
T TIGR01243 328 DPALRRPGRFDREIVIRVPDKRARKEILKVHTRN---------MPL-AEDVDLDKLAEVT--HGFVGADLAALAKEAAMA 395 (733)
T ss_pred CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC---------CCC-ccccCHHHHHHhC--CCCCHHHHHHHHHHHHHH
Confidence 566664 89889999999999999999744321 111 1233456666653 345567888888877777
Q ss_pred HHHHHH
Q 047225 246 NLAEII 251 (287)
Q Consensus 246 ~~~~~~ 251 (287)
++.+..
T Consensus 396 al~r~~ 401 (733)
T TIGR01243 396 ALRRFI 401 (733)
T ss_pred HHHHHh
Confidence 665543
No 185
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=5.3e-12 Score=119.03 Aligned_cols=189 Identities=16% Similarity=0.222 Sum_probs=112.8
Q ss_pred hhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchh-----hhhC-CCCCCCcccch
Q 047225 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVS-----KFFG-SPPGYVGFENG 78 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~ 78 (287)
.++..+.... ..+.++|+||+|+|||++++.+++.+.-....-..-.|+.......+. +++. ......+.+..
T Consensus 27 ~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~i 105 (585)
T PRK14950 27 TLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDA 105 (585)
T ss_pred HHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHH
Confidence 3444444332 223579999999999999999999883211100000111100000000 0000 00011222222
Q ss_pred hhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchH
Q 047225 79 GQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQ 154 (287)
Q Consensus 79 ~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~ 154 (287)
+.+.+.+.. ..+.|++|||+|.++.+.++.|++.+++.. +.++||++++...
T Consensus 106 r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp-----------~~tv~Il~t~~~~------------- 161 (585)
T PRK14950 106 REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPP-----------PHAIFILATTEVH------------- 161 (585)
T ss_pred HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCC-----------CCeEEEEEeCChh-------------
Confidence 233333222 345799999999999999999999999731 2456776664321
Q ss_pred HHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchh
Q 047225 155 MERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARP 234 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~ 234 (287)
.+.+.+.+|+ ..+.|.+++..++..++...+.+. .+.++++++..++..+. .+.|.
T Consensus 162 -----------kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~e---------gl~i~~eal~~La~~s~---Gdlr~ 217 (585)
T PRK14950 162 -----------KVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAE---------GINLEPGALEAIARAAT---GSMRD 217 (585)
T ss_pred -----------hhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CCHHH
Confidence 2346788999 789999999999999886665432 35689999999988653 34566
Q ss_pred HHHHHHHH
Q 047225 235 LRRAIGRL 242 (287)
Q Consensus 235 l~~~i~~~ 242 (287)
+.+.++++
T Consensus 218 al~~LekL 225 (585)
T PRK14950 218 AENLLQQL 225 (585)
T ss_pred HHHHHHHH
Confidence 66665543
No 186
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.41 E-value=9.9e-14 Score=106.79 Aligned_cols=130 Identities=22% Similarity=0.325 Sum_probs=85.4
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHH
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTE 83 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
++++..+........+++|+|++||||+++|+.|+........+++.++|.... .+
T Consensus 8 ~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------------------~~ 63 (138)
T PF14532_consen 8 RRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------------------AE 63 (138)
T ss_dssp HHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------------------HH
T ss_pred HHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------------------HH
Confidence 344443333222223699999999999999999999876656677777776432 11
Q ss_pred HHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 84 AVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 84 ~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
.+.....+++||+|+|.++++.|..|...++... ..++.+|+++..+......
T Consensus 64 ~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~----------~~~~RlI~ss~~~l~~l~~----------------- 116 (138)
T PF14532_consen 64 LLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE----------RSNVRLIASSSQDLEELVE----------------- 116 (138)
T ss_dssp HHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT----------TTTSEEEEEECC-CCCHHH-----------------
T ss_pred HHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC----------CCCeEEEEEeCCCHHHHhh-----------------
Confidence 2222355799999999999999999999998521 1255788888776543211
Q ss_pred HhcCChhHHhccCce-EEeCCC
Q 047225 164 RRRFRPEFLNRIDEV-IVFRQL 184 (287)
Q Consensus 164 ~~~~~~~l~~r~~~~-i~~~~~ 184 (287)
+..|.++|..++... |.+||+
T Consensus 117 ~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 117 EGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp HSTHHHHHHHHCSTCEEEE---
T ss_pred ccchhHHHHHHhCCCEEeCCCC
Confidence 246778999999744 888885
No 187
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.3e-12 Score=107.59 Aligned_cols=170 Identities=26% Similarity=0.395 Sum_probs=115.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++++||||||||..|+++|+.. +.-++.+-.|+.... ..|. |..-.+.++++.+...-+++||||+
T Consensus 213 gvllygppgtgktl~aravanrt---dacfirvigselvqk-----yvge-----garmvrelf~martkkaciiffdei 279 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSELVQK-----YVGE-----GARMVRELFEMARTKKACIIFFDEI 279 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhccc---CceEEeehhHHHHHH-----Hhhh-----hHHHHHHHHHHhcccceEEEEeecc
Confidence 49999999999999999999887 666666666654432 2221 1111256788888888899999999
Q ss_pred ccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.. +.++|...++++..-.-..+. .|+.+.+++|.+. .+
T Consensus 280 daiggarfddg~ggdnevqrtmleli~qldgfdpr------gnikvlmatnrpd------------------------tl 329 (435)
T KOG0729|consen 280 DAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR------GNIKVLMATNRPD------------------------TL 329 (435)
T ss_pred ccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC------CCeEEEeecCCCC------------------------Cc
Confidence 942 557888888888764333332 2667999999874 34
Q ss_pred ChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 168 RPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 168 ~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
.|+|+ .|++..+.|.-|+.+....|++.+-. ...++.++.-.+... ..++.+.-+++..+..+=
T Consensus 330 dpallrpgrldrkvef~lpdlegrt~i~kihak-----------smsverdir~ellar-lcpnstgaeirsvcteag 395 (435)
T KOG0729|consen 330 DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK-----------SMSVERDIRFELLAR-LCPNSTGAEIRSVCTEAG 395 (435)
T ss_pred CHhhcCCcccccceeccCCcccccceeEEEecc-----------ccccccchhHHHHHh-hCCCCcchHHHHHHHHhh
Confidence 57777 78999999999999988888843322 223444444444433 233333457777766543
No 188
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.39 E-value=5e-12 Score=97.46 Aligned_cols=131 Identities=27% Similarity=0.382 Sum_probs=86.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++++||||||||++++.++..+...+.+++.+++.+.............. ...............++++||+
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~lilDe~ 93 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-------LVRLLFELAEKAKPGVLFIDEI 93 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-------hHhHHHHhhccCCCeEEEEeCh
Confidence 699999999999999999999986666778888887655432221111000 0011122222344579999999
Q ss_pred ccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCce
Q 047225 99 EKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEV 178 (287)
Q Consensus 99 d~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~ 178 (287)
+.+++.....+...++...... ....++.+|+++|.... ..+.+.+.+|++..
T Consensus 94 ~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~----------------------~~~~~~~~~r~~~~ 146 (151)
T cd00009 94 DSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLL----------------------GDLDRALYDRLDIR 146 (151)
T ss_pred hhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCcccc----------------------CCcChhHHhhhccE
Confidence 9998888888888877642211 11246678888887542 13457888999877
Q ss_pred EEeCC
Q 047225 179 IVFRQ 183 (287)
Q Consensus 179 i~~~~ 183 (287)
+.++|
T Consensus 147 i~~~~ 151 (151)
T cd00009 147 IVIPL 151 (151)
T ss_pred eecCC
Confidence 77765
No 189
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.4e-12 Score=105.63 Aligned_cols=136 Identities=25% Similarity=0.360 Sum_probs=92.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++++||||||||.+|++.|... +..+...-. +..++-++|.. ....+..+...++....|+||||+
T Consensus 207 GvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAg-----PQLVQMfIGdG-----AkLVRDAFaLAKEkaP~IIFIDEl 273 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTLMARACAAQT---NATFLKLAG-----PQLVQMFIGDG-----AKLVRDAFALAKEKAPTIIFIDEL 273 (424)
T ss_pred ceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcc-----hHHHhhhhcch-----HHHHHHHHHHhhccCCeEEEEech
Confidence 49999999999999999999876 222211111 11122233322 222245566666777799999999
Q ss_pred ccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.. +.++|...+.+++.-.-.- +-.++-+|+++|.-. .+
T Consensus 274 DAIGtKRfDSek~GDREVQRTMLELLNQLDGFs------s~~~vKviAATNRvD------------------------iL 323 (424)
T KOG0652|consen 274 DAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS------SDDRVKVIAATNRVD------------------------IL 323 (424)
T ss_pred hhhccccccccccccHHHHHHHHHHHHhhcCCC------CccceEEEeeccccc------------------------cc
Confidence 943 5578888888887521111 112567999999742 45
Q ss_pred ChhHH--hccCceEEeCCCCHHHHHHHHHHHH
Q 047225 168 RPEFL--NRIDEVIVFRQLNKMQLMEIVDIML 197 (287)
Q Consensus 168 ~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l 197 (287)
.|+|+ .|++..|.||.|+.+....|++.+-
T Consensus 324 DPALlRSGRLDRKIEfP~Pne~aRarIlQIHs 355 (424)
T KOG0652|consen 324 DPALLRSGRLDRKIEFPHPNEEARARILQIHS 355 (424)
T ss_pred CHHHhhcccccccccCCCCChHHHHHHHHHhh
Confidence 78888 6899999999999999999986553
No 190
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.9e-12 Score=108.02 Aligned_cols=144 Identities=29% Similarity=0.395 Sum_probs=93.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC------CCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCC-cE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG------SKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRP-HS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 91 (287)
.++++||||||||+|+++||+.+.- ....++.+++.. .....|+.....+.... .++.+.++..+ .-
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs-----LFSKWFsESgKlV~kmF-~kI~ELv~d~~~lV 252 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS-----LFSKWFSESGKLVAKMF-QKIQELVEDRGNLV 252 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH-----HHHHHHhhhhhHHHHHH-HHHHHHHhCCCcEE
Confidence 4999999999999999999999821 123344444422 22233322111110000 13334444433 34
Q ss_pred EEEEcCcccccH---------------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHH
Q 047225 92 VILFDEIEKAHR---------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQME 156 (287)
Q Consensus 92 il~iDeid~~~~---------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~ 156 (287)
.++|||++-+.. .+.++|++-++.- -..+|+.+.+|+|...
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl---------K~~~NvliL~TSNl~~--------------- 308 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL---------KRYPNVLILATSNLTD--------------- 308 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh---------ccCCCEEEEeccchHH---------------
Confidence 778999994321 3677788877752 1235778888888642
Q ss_pred HHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHH
Q 047225 157 RGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIY 201 (287)
Q Consensus 157 ~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~ 201 (287)
.++-+|.+|-|...++.||+...+.+|++..+.++.
T Consensus 309 ---------siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 309 ---------SIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred ---------HHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999998887654
No 191
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.37 E-value=8.7e-12 Score=122.31 Aligned_cols=186 Identities=15% Similarity=0.179 Sum_probs=115.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC-------CCceEEecccccccccchhhhhCCCCCCCcccc--hhhHHHHHHh-
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS-------KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFEN--GGQLTEAVRH- 87 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~- 87 (287)
++++|+||||||||++++.++..+... +.+++.++++..... ..+.|..+ ...+++.+..
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~----------~~~~g~~e~~l~~~l~~~~~~ 264 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAG----------AKYRGEFEERLKAVLNEVTKS 264 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhc----------chhhhhHHHHHHHHHHHHHhc
Confidence 368899999999999999999987432 344455554332211 01111111 1233333333
Q ss_pred CCcEEEEEcCccccc--------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHH
Q 047225 88 RPHSVILFDEIEKAH--------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGV 159 (287)
Q Consensus 88 ~~~~il~iDeid~~~--------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~ 159 (287)
....||||||++.+. .+..+.|...+..| ...+|++|+....
T Consensus 265 ~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-------------~i~~IgaTt~~e~----------------- 314 (852)
T TIGR03346 265 EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-------------ELHCIGATTLDEY----------------- 314 (852)
T ss_pred CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-------------ceEEEEeCcHHHH-----------------
Confidence 345799999999764 24566677666654 3457888876421
Q ss_pred HHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHH
Q 047225 160 AEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 160 ~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
+.++ ..+++|.+|| ..|.+++|+.++...|+.....++..+ ..+.+.++++..++..+..+- +.|.+....
T Consensus 315 r~~~--~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~~-----~~v~~~d~~i~~~~~ls~~yi-~~r~lPdkA 385 (852)
T TIGR03346 315 RKYI--EKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEVH-----HGVRITDPAIVAAATLSHRYI-TDRFLPDKA 385 (852)
T ss_pred HHHh--hcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhccc-----cCCCCCHHHHHHHHHhccccc-cccCCchHH
Confidence 1111 2478999999 778999999999999887665554322 256789999999887654433 335554444
Q ss_pred HHHHHHHHHHHHH
Q 047225 240 GRLLEDNLAEIIL 252 (287)
Q Consensus 240 ~~~~~~~~~~~~~ 252 (287)
-+++..+-+...+
T Consensus 386 idlld~a~a~~~~ 398 (852)
T TIGR03346 386 IDLIDEAAARIRM 398 (852)
T ss_pred HHHHHHHHHHHHh
Confidence 4466655554433
No 192
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.37 E-value=2.1e-11 Score=112.54 Aligned_cols=166 Identities=24% Similarity=0.330 Sum_probs=115.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh-------CCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH-------RPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 91 (287)
.++|+||||-||||||+.+|+.. +..++.+|.++......+.. .+-.++.. ....
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt~~~v~~---------------kI~~avq~~s~l~adsrP~ 389 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERTAPMVKE---------------KIENAVQNHSVLDADSRPV 389 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---CceEEEecccccccHHHHHH---------------HHHHHHhhccccccCCCcc
Confidence 69999999999999999999998 89999999988765433322 12222111 2346
Q ss_pred EEEEcCcccccHHHHHHHHHhhcCce--eecCCC--------ceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHH
Q 047225 92 VILFDEIEKAHRDVLNVMLQLLDDGR--VTDGKG--------QTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAE 161 (287)
Q Consensus 92 il~iDeid~~~~~~~~~L~~~l~~~~--~~~~~g--------~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~ 161 (287)
+|++||||..++..++.++.++.... .+.+.+ ....+----||+.||--+
T Consensus 390 CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY-------------------- 449 (877)
T KOG1969|consen 390 CLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY-------------------- 449 (877)
T ss_pred eEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--------------------
Confidence 99999999999999999999887211 111111 111111235777777532
Q ss_pred HHHhcCChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHH
Q 047225 162 ELRRRFRPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 162 ~~~~~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
.|+|. .-+-+++.|+|++...+.+-++..+.+. .+.++..++..|+..+. .++|.+|
T Consensus 450 ------aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE---------~mr~d~~aL~~L~el~~------~DIRsCI 508 (877)
T KOG1969|consen 450 ------APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRE---------NMRADSKALNALCELTQ------NDIRSCI 508 (877)
T ss_pred ------chhhhhcccceEEEEecCCChhHHHHHHHHHHhhh---------cCCCCHHHHHHHHHHhc------chHHHHH
Confidence 23433 3344779999999999887776666543 45788899999999865 6899999
Q ss_pred HHHH
Q 047225 240 GRLL 243 (287)
Q Consensus 240 ~~~~ 243 (287)
+.+-
T Consensus 509 NtLQ 512 (877)
T KOG1969|consen 509 NTLQ 512 (877)
T ss_pred HHHH
Confidence 9543
No 193
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=1.4e-11 Score=107.79 Aligned_cols=146 Identities=17% Similarity=0.225 Sum_probs=94.4
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccc--------hhhhhCCCC-CCCcccchhhHHHH
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT--------VSKFFGSPP-GYVGFENGGQLTEA 84 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~ 84 (287)
++..+.++|+||+|+||+++|+.+|+.+.-.... -.-.|+.-..... +..+..... ...+.++.+.+.+.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~-~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~ 97 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQ-GGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSF 97 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHH
Confidence 4444469999999999999999999998322100 0001211100000 000000000 11233334445444
Q ss_pred HHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHH
Q 047225 85 VRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVA 160 (287)
Q Consensus 85 ~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
+.. +++.|++||++|+++....++|++.+|+. .+++.||++|+...
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-----------p~~~~fiL~t~~~~------------------- 147 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEP-----------SGDTVLLLISHQPS------------------- 147 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCC-----------CCCeEEEEEECChh-------------------
Confidence 443 44679999999999999999999999983 13556777776543
Q ss_pred HHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHH
Q 047225 161 EELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIM 196 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~ 196 (287)
.+.|.+.||| ..+.|+|++.++..+++...
T Consensus 148 -----~ll~TI~SRc-~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 148 -----RLLPTIKSRC-QQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred -----hCcHHHHhhc-eeeeCCCcCHHHHHHHHHHh
Confidence 3468999999 88999999999998888654
No 194
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=4e-12 Score=112.60 Aligned_cols=184 Identities=23% Similarity=0.250 Sum_probs=122.6
Q ss_pred ccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh
Q 047225 8 VGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH 87 (287)
Q Consensus 8 ~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (287)
.+++.|-+ .++|+||||+|||.+++++|.+. ...++.+..+..... . .|.. -.-.+.+++..+.
T Consensus 180 ~glr~p~r---glLLfGPpgtGKtmL~~aiAsE~---~atff~iSassLtsK-----~----~Ge~-eK~vralf~vAr~ 243 (428)
T KOG0740|consen 180 LGLREPVR---GLLLFGPPGTGKTMLAKAIATES---GATFFNISASSLTSK-----Y----VGES-EKLVRALFKVARS 243 (428)
T ss_pred hccccccc---hhheecCCCCchHHHHHHHHhhh---cceEeeccHHHhhhh-----c----cChH-HHHHHHHHHHHHh
Confidence 34444433 59999999999999999999998 556666655543322 1 1111 1113567888888
Q ss_pred CCcEEEEEcCcccc-----------cHHH-HHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHH
Q 047225 88 RPHSVILFDEIEKA-----------HRDV-LNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQM 155 (287)
Q Consensus 88 ~~~~il~iDeid~~-----------~~~~-~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~ 155 (287)
..++|+||||+|.+ .+.. ...|.+.. +.... .-.++++|.|||.+..
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~--~~~s~------~~drvlvigaTN~P~e------------- 302 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFD--GKNSA------PDDRVLVIGATNRPWE------------- 302 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhc--cccCC------CCCeEEEEecCCCchH-------------
Confidence 88899999999954 1111 11222221 11111 1125678889998643
Q ss_pred HHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhH
Q 047225 156 ERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l 235 (287)
++.++++||...+.+|.|+.+....++...|.+. ...+.+.-++.+++... +++..++
T Consensus 303 -----------~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~---------~~~l~~~d~~~l~~~Te--gysgsdi 360 (428)
T KOG0740|consen 303 -----------LDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ---------PNGLSDLDISLLAKVTE--GYSGSDI 360 (428)
T ss_pred -----------HHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC---------CCCccHHHHHHHHHHhc--CcccccH
Confidence 2357778998889999999999999998888753 23567777888887643 3455799
Q ss_pred HHHHHHHHHHHHHHH
Q 047225 236 RRAIGRLLEDNLAEI 250 (287)
Q Consensus 236 ~~~i~~~~~~~~~~~ 250 (287)
...+..+.+..+...
T Consensus 361 ~~l~kea~~~p~r~~ 375 (428)
T KOG0740|consen 361 TALCKEAAMGPLREL 375 (428)
T ss_pred HHHHHHhhcCchhhc
Confidence 999998887776544
No 195
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=1.2e-11 Score=109.05 Aligned_cols=173 Identities=16% Similarity=0.253 Sum_probs=103.8
Q ss_pred hhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC----CceE-Eecccccccccch-----hhh--hCCC---
Q 047225 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK----EAMV-RIDMSEYMEKHTV-----SKF--FGSP--- 69 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~-~~~~~~~~~~~~~-----~~~--~~~~--- 69 (287)
.++..+....-| +.++|+||+|+|||++++.+++.+.... .+.. ...|..-.....+ .++ +..+
T Consensus 34 ~L~~a~~~grl~-ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~ 112 (351)
T PRK09112 34 FLAQAYREGKLH-HALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDE 112 (351)
T ss_pred HHHHHHHcCCCC-eeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeeccccc
Confidence 344444443323 2599999999999999999999984421 1111 0111110000000 000 1000
Q ss_pred -----CCCCcccchhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCC
Q 047225 70 -----PGYVGFENGGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIG 140 (287)
Q Consensus 70 -----~~~~~~~~~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~ 140 (287)
....+.++.+.+.+.+.. +.+.|++|||+|.++...++.|++.+++.. .+..+|+.++.+
T Consensus 113 ~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp-----------~~~~fiLit~~~ 181 (351)
T PRK09112 113 KTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP-----------ARALFILISHSS 181 (351)
T ss_pred ccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC-----------CCceEEEEECCh
Confidence 011122233334444443 456799999999999999999999999731 234555555433
Q ss_pred chhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHH
Q 047225 141 DSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKK 220 (287)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~ 220 (287)
. .+.+.+.+|| ..+.|+|++.+++.+++.... ....++++++..
T Consensus 182 ~------------------------~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~-----------~~~~~~~~~~~~ 225 (351)
T PRK09112 182 G------------------------RLLPTIRSRC-QPISLKPLDDDELKKALSHLG-----------SSQGSDGEITEA 225 (351)
T ss_pred h------------------------hccHHHHhhc-cEEEecCCCHHHHHHHHHHhh-----------cccCCCHHHHHH
Confidence 2 2358899999 899999999999999986521 111266777777
Q ss_pred HHHhc
Q 047225 221 LIEEG 225 (287)
Q Consensus 221 l~~~~ 225 (287)
++..+
T Consensus 226 i~~~s 230 (351)
T PRK09112 226 LLQRS 230 (351)
T ss_pred HHHHc
Confidence 77654
No 196
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.35 E-value=5.1e-11 Score=102.06 Aligned_cols=189 Identities=17% Similarity=0.142 Sum_probs=108.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEE-ecccccccc---cchhhhhCCCCCCCcccc---hhhHH----HHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVR-IDMSEYMEK---HTVSKFFGSPPGYVGFEN---GGQLT----EAVRH 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~----~~~~~ 87 (287)
.++|+||+|+|||++++.++..+......... +++ ..... ..+...+|.... +... ...+. .....
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~-~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT-RVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC-CCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999987432211111 111 11111 122233333211 1111 11222 22234
Q ss_pred CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 88 RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 88 ~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
+...+++|||++.+++...+.|..+.+... .++ ..+.+++++.+... +.+...-
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l~~l~~~~~---~~~-----~~~~vvl~g~~~~~------------------~~l~~~~ 175 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEELRMLSNFQT---DNA-----KLLQIFLVGQPEFR------------------ETLQSPQ 175 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHHHHHhCccc---CCC-----CeEEEEEcCCHHHH------------------HHHcCch
Confidence 556799999999999888887776654310 001 12345666654311 1111111
Q ss_pred ChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 168 RPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 168 ~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
...+.+|+...+.++|++.+++.+++...+.... ......+++++++.|...+- ..+|.+...+..++.
T Consensus 176 ~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g-----~~~~~~~~~~~~~~i~~~s~---G~p~~i~~l~~~~~~ 244 (269)
T TIGR03015 176 LQQLRQRIIASCHLGPLDREETREYIEHRLERAG-----NRDAPVFSEGAFDAIHRFSR---GIPRLINILCDRLLL 244 (269)
T ss_pred hHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcC-----CCCCCCcCHHHHHHHHHHcC---CcccHHHHHHHHHHH
Confidence 2357788877899999999999999977765321 01124689999999998753 223455555554444
No 197
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.34 E-value=9.1e-12 Score=121.83 Aligned_cols=159 Identities=13% Similarity=0.186 Sum_probs=101.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC-------CCceEEecccccccccchhhhhCCCCCCCcccc--hhhHHHHH-Hh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS-------KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFEN--GGQLTEAV-RH 87 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~ 87 (287)
++++|+||||||||++++.++..+... +.+++.++++...... .+.|-.+ ...+++.+ ..
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~----------~~~g~~e~~lk~~~~~~~~~ 269 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGA----------KYRGEFEERLKGVLNDLAKQ 269 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhcc----------chhhhhHHHHHHHHHHHHHc
Confidence 369999999999999999999998431 3455555554432111 1111110 12233333 23
Q ss_pred CCcEEEEEcCcccccH--------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHH
Q 047225 88 RPHSVILFDEIEKAHR--------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGV 159 (287)
Q Consensus 88 ~~~~il~iDeid~~~~--------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~ 159 (287)
....||||||++.+.. +..+.|.+.+..| ...+|++|++....
T Consensus 270 ~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-------------~l~~IgaTt~~e~r---------------- 320 (857)
T PRK10865 270 EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-------------ELHCVGATTLDEYR---------------- 320 (857)
T ss_pred CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-------------CCeEEEcCCCHHHH----------------
Confidence 4457999999997742 4677788887765 44688888875321
Q ss_pred HHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh
Q 047225 160 AEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE 224 (287)
Q Consensus 160 ~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~ 224 (287)
.+. ..+++|.+|| ..|.++.|+.++...|++....++.. ...+.++++++...+..
T Consensus 321 -~~~--~~d~al~rRf-~~i~v~eP~~~~~~~iL~~l~~~~e~-----~~~v~~~d~a~~~a~~l 376 (857)
T PRK10865 321 -QYI--EKDAALERRF-QKVFVAEPSVEDTIAILRGLKERYEL-----HHHVQITDPAIVAAATL 376 (857)
T ss_pred -HHh--hhcHHHHhhC-CEEEeCCCCHHHHHHHHHHHhhhhcc-----CCCCCcCHHHHHHHHHH
Confidence 110 2368999999 57889999999999988655443321 12466777777766443
No 198
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.32 E-value=1.2e-10 Score=96.74 Aligned_cols=173 Identities=23% Similarity=0.295 Sum_probs=101.4
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCcc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIE 99 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid 99 (287)
-.+.||+|||||.+++.+++.+ +..++.++|++..+...+.+ -+...+..+ .+++|||+|
T Consensus 35 ~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~~~l~r---------------il~G~~~~G--aW~cfdefn 94 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDYQSLSR---------------ILKGLAQSG--AWLCFDEFN 94 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-HHHHHH---------------HHHHHHHHT---EEEEETCC
T ss_pred CCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccHHHHHH---------------HHHHHhhcC--chhhhhhhh
Confidence 5689999999999999999999 88999999998776544332 334455554 599999999
Q ss_pred cccHHHHHHHHHhhc-------Cc--eeecCCCceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 100 KAHRDVLNVMLQLLD-------DG--RVTDGKGQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 100 ~~~~~~~~~L~~~l~-------~~--~~~~~~g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
+++.+++..+.+.+. .+ .+.. .|..+... ++-+++|+|++.... ..+|+
T Consensus 95 rl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~np~y~gr--------------------~~LP~ 153 (231)
T PF12774_consen 95 RLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITMNPGYAGR--------------------SELPE 153 (231)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE-B-CCCC----------------------S-H
T ss_pred hhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEeeccccCCc--------------------ccCCH
Confidence 999988777654433 22 2333 46666664 677888999875332 24566
Q ss_pred hHHhccCceEEeCCCCHHHHHHHHHHHH-----HHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLNKMQLMEIVDIML-----KEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~~~~~~~il~~~l-----~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
.|...| ..+.+..||...+.++.-... +....++. .--+.+..+.+...++.+|.|.++.++..
T Consensus 154 nLk~lF-Rpvam~~PD~~~I~ei~L~s~GF~~a~~La~kl~-------~l~~l~~~~lS~q~hydfgLRalk~vl~~ 222 (231)
T PF12774_consen 154 NLKALF-RPVAMMVPDLSLIAEILLLSQGFKDAKSLAKKLV-------SLFQLCKEQLSKQDHYDFGLRALKSVLRM 222 (231)
T ss_dssp HHCTTE-EEEE--S--HHHHHHHHHHCCCTSSHHHHHHHHH-------HHHHHHHHCS-SSTT---SHHHHHHHHHH
T ss_pred hHHHHh-heeEEeCCCHHHHHHHHHHHcCchhHHHHHHHHH-------HHHHHHHHhhccCccccccHHHHHHHHHH
Confidence 666777 779999999888888763111 11111111 00122233333345678899998887763
No 199
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.5e-11 Score=113.75 Aligned_cols=189 Identities=15% Similarity=0.192 Sum_probs=133.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCC-------CceEEecccccccccchhhhhCCCCCCCcccc--hhhHHHHHHhC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSK-------EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFEN--GGQLTEAVRHR 88 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 88 (287)
+|-+|+|+||+|||.++..||..+.... ..++..|++....- ..|.|--+ ...+.+.+...
T Consensus 192 NNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAG----------akyRGeFEeRlk~vl~ev~~~ 261 (786)
T COG0542 192 NNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAG----------AKYRGEFEERLKAVLKEVEKS 261 (786)
T ss_pred CCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcc----------ccccCcHHHHHHHHHHHHhcC
Confidence 3578999999999999999999984433 34445555443321 22222221 23456667766
Q ss_pred CcEEEEEcCcccc---------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHH
Q 047225 89 PHSVILFDEIEKA---------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGV 159 (287)
Q Consensus 89 ~~~il~iDeid~~---------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~ 159 (287)
+.-|+||||++.+ ..+.-+.|.+.+..|.+. +|.+|.. +++
T Consensus 262 ~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~-------------~IGATT~-----------------~EY 311 (786)
T COG0542 262 KNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR-------------CIGATTL-----------------DEY 311 (786)
T ss_pred CCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE-------------EEEeccH-----------------HHH
Confidence 6789999999943 256788899999987544 6666654 234
Q ss_pred HHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHH
Q 047225 160 AEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 160 ~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
+.+.++ +++|-+|| +.|.+..|+.++...|++-.-.++..+. .+.++++++...+..+..+ .+.|.+....
T Consensus 312 Rk~iEK--D~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH-----~V~i~D~Al~aAv~LS~RY-I~dR~LPDKA 382 (786)
T COG0542 312 RKYIEK--DAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHH-----GVRITDEALVAAVTLSDRY-IPDRFLPDKA 382 (786)
T ss_pred HHHhhh--chHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHcc-----CceecHHHHHHHHHHHHhh-cccCCCCchH
Confidence 444444 68999999 9999999999999999977766655443 5899999999998875433 3347777666
Q ss_pred HHHHHHHHHHHHHhcc
Q 047225 240 GRLLEDNLAEIILTGY 255 (287)
Q Consensus 240 ~~~~~~~~~~~~~~~~ 255 (287)
-+++..+-++..++..
T Consensus 383 IDLiDeA~a~~~l~~~ 398 (786)
T COG0542 383 IDLLDEAGARVRLEID 398 (786)
T ss_pred HHHHHHHHHHHHhccc
Confidence 6688877777766544
No 200
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=3.4e-11 Score=110.99 Aligned_cols=136 Identities=29% Similarity=0.414 Sum_probs=95.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||.+|+++|... +.+++.++.+++.+. +.| +|....+.++...+....+|+||||+
T Consensus 185 GvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVem-----fVG-----vGAsRVRdLF~qAkk~aP~IIFIDEi 251 (596)
T COG0465 185 GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM-----FVG-----VGASRVRDLFEQAKKNAPCIIFIDEI 251 (596)
T ss_pred ceeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhhh-----hcC-----CCcHHHHHHHHHhhccCCCeEEEehh
Confidence 49999999999999999999887 788888888877643 222 23333456666666655599999999
Q ss_pred ccccH-----------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKAHR-----------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~~~-----------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|..-. +....|.+++.+..-...+ ..+++|.+||.+. .+
T Consensus 252 DAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~------~gviviaaTNRpd------------------------Vl 301 (596)
T COG0465 252 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN------EGVIVIAATNRPD------------------------VL 301 (596)
T ss_pred hhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC------CceEEEecCCCcc------------------------cc
Confidence 95422 2333455555432211111 2457778888763 34
Q ss_pred ChhHH--hccCceEEeCCCCHHHHHHHHHHHH
Q 047225 168 RPEFL--NRIDEVIVFRQLNKMQLMEIVDIML 197 (287)
Q Consensus 168 ~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l 197 (287)
+++|+ .|||..|.++.|+.....+|++-++
T Consensus 302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 302 DPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred hHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 56776 8999999999999999999997444
No 201
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=8.9e-12 Score=104.57 Aligned_cols=135 Identities=26% Similarity=0.422 Sum_probs=94.2
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccccc--chhhhhCCCCCCCcccchhhHHHHHHhCCcEE
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKH--TVSKFFGSPPGYVGFENGGQLTEAVRHRPHSV 92 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 92 (287)
.|. .++||||||+|||.++++++..+ +..++.+..++..+.. ...+++ +..+..++....++
T Consensus 165 ~Pk-g~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv~kyiGEsaRlI------------Remf~yA~~~~pci 228 (388)
T KOG0651|consen 165 PPK-GLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALVDKYIGESARLI------------RDMFRYAREVIPCI 228 (388)
T ss_pred CCc-eeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhhhhhcccHHHHH------------HHHHHHHhhhCceE
Confidence 344 59999999999999999999999 6667766666655431 112222 34444555555599
Q ss_pred EEEcCccc-----------ccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHH
Q 047225 93 ILFDEIEK-----------AHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAE 161 (287)
Q Consensus 93 l~iDeid~-----------~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~ 161 (287)
+|+||+|. .+..++..|..+++.-.-... +..+-+|+|+|.+..
T Consensus 229 ifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~------l~rVk~ImatNrpdt------------------- 283 (388)
T KOG0651|consen 229 IFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT------LHRVKTIMATNRPDT------------------- 283 (388)
T ss_pred EeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh------cccccEEEecCCccc-------------------
Confidence 99999993 255688888888874222221 235679999998753
Q ss_pred HHHhcCChhHH--hccCceEEeCCCCHHHHHHHHHH
Q 047225 162 ELRRRFRPEFL--NRIDEVIVFRQLNKMQLMEIVDI 195 (287)
Q Consensus 162 ~~~~~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~ 195 (287)
+.|+|+ .|++..++.|-|+......|++.
T Consensus 284 -----LdpaLlRpGRldrk~~iPlpne~~r~~I~Ki 314 (388)
T KOG0651|consen 284 -----LDPALLRPGRLDRKVEIPLPNEQARLGILKI 314 (388)
T ss_pred -----cchhhcCCccccceeccCCcchhhceeeEee
Confidence 456777 78888899998888777776643
No 202
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.30 E-value=5e-13 Score=122.14 Aligned_cols=185 Identities=16% Similarity=0.197 Sum_probs=113.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhh-H--HHHHHhCCcEEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQ-L--TEAVRHRPHSVIL 94 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~il~ 94 (287)
.|++|+|.||||||.+.+.+++..... .+..-..+.. .|...+.+.-.+.++ + ..++...++++++
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg--~yTSGkGsSa---------vGLTayVtrd~dtkqlVLesGALVLSD~GiCC 531 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRG--VYTSGKGSSA---------VGLTAYVTKDPDTRQLVLESGALVLSDNGICC 531 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCcc--eeecCCccch---------hcceeeEEecCccceeeeecCcEEEcCCceEE
Confidence 479999999999999999999987321 1100000000 000000000000011 1 1244445668999
Q ss_pred EcCcccccHHHHHHHHHhhcCceeecCC-Cceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHH
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFL 172 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (287)
|||||||.....+.|.+.|+...+++++ |..-.++ .+-|++++||-....+.. ...+++. .++|.|+
T Consensus 532 IDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~--------k~i~eNI---~LpptLL 600 (804)
T KOG0478|consen 532 IDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPN--------KSIIENI---NLPPTLL 600 (804)
T ss_pred chhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCC--------Cchhhcc---CCChhhh
Confidence 9999999999999999999999999887 7666665 788999999865544332 1122221 5889999
Q ss_pred hccCce-EEeCCCCHHHHHHHHHHHHH-------------------HHHHHHHhcCcEEEeChhHHHHHHHh
Q 047225 173 NRIDEV-IVFRQLNKMQLMEIVDIMLK-------------------EIYERLEAKNMELTVTHTFKKKLIEE 224 (287)
Q Consensus 173 ~r~~~~-i~~~~~~~~~~~~il~~~l~-------------------~~~~~~~~~~~~~~i~~~~~~~l~~~ 224 (287)
+|||-+ +.+.+++...-+.+..+... +.....+.......+.+++.+.+...
T Consensus 601 SRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~a 672 (804)
T KOG0478|consen 601 SRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQA 672 (804)
T ss_pred hhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHH
Confidence 999866 77788886633444333221 11222233344567777777777653
No 203
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.29 E-value=2.9e-11 Score=112.91 Aligned_cols=193 Identities=12% Similarity=0.085 Sum_probs=125.6
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchh--hHHHHHHhCCcEEEE
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGG--QLTEAVRHRPHSVIL 94 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~il~ 94 (287)
++.++|.|++|||||++++.++..+.. ..+++....+. +...++|...-........ .-...+...+++|||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~~-----t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~ 98 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPGI-----ADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLV 98 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCCC-----cHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEE
Confidence 346999999999999999999998843 23444333322 2234444320000000001 112355566778999
Q ss_pred EcCcccccHHHHHHHHHhhcCceeecC-CCceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHH
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDGRVTDG-KGQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFL 172 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~~~~~~-~g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (287)
+||++++++.+++.|++.|++|.++.. +|..+.++ ++++|++.|+... .+.++++++
T Consensus 99 lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~---------------------~~~L~~~lL 157 (584)
T PRK13406 99 LAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEE---------------------DERAPAALA 157 (584)
T ss_pred ecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhc---------------------ccCCCHHhH
Confidence 999999999999999999999998886 48888886 6777776333211 146889999
Q ss_pred hccCceEEeCCCCHHHHHHH--HHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCC-CchhHHHHHH
Q 047225 173 NRIDEVIVFRQLNKMQLMEI--VDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSY-GARPLRRAIG 240 (287)
Q Consensus 173 ~r~~~~i~~~~~~~~~~~~i--l~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~-~~r~l~~~i~ 240 (287)
+||+..+.+.+++..+..+. ....+......+. .+.++++++++++......+. |.|..-.++.
T Consensus 158 DRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~----~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llr 224 (584)
T PRK13406 158 DRLAFHLDLDGLALRDAREIPIDADDIAAARARLP----AVGPPPEAIAALCAAAAALGIASLRAPLLALR 224 (584)
T ss_pred hheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHc----cCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 99999999999997765431 1112223333331 468899999998876444443 5455544444
No 204
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.28 E-value=1.4e-10 Score=101.31 Aligned_cols=112 Identities=16% Similarity=0.141 Sum_probs=78.2
Q ss_pred CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCC-ceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 88 RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKG-QTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 88 ~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g-~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
..++++-|+|+.+++.+.+..|+.+++++.+....+ ..+. -+.+||+++|+..- .......
T Consensus 235 aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~-~d~liia~sNe~e~-----------------~~~~~~k 296 (361)
T smart00763 235 ANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIP-IDGLIIAHSNESEW-----------------QRFKSNK 296 (361)
T ss_pred ccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccc-cceEEEEeCCHHHH-----------------hhhhccc
Confidence 445899999999999999999999999999887543 2333 34588899997531 1111123
Q ss_pred CChhHHhccCceEEeCCCC-HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh
Q 047225 167 FRPEFLNRIDEVIVFRQLN-KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE 224 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~ 224 (287)
...+|++|| ..+.+|++. ..+..+|.++.+..-. .....+.+.+++.++..
T Consensus 297 ~~eaf~dR~-~~i~vpY~l~~~~E~~Iy~k~~~~s~------~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 297 KNEALLDRI-IKVKVPYCLRVSEEAQIYEKLLRNSD------LTEAHIAPHTLEMAALF 348 (361)
T ss_pred cchhhhhce-EEEeCCCcCCHHHHHHHHHHHhccCc------CcccccCchHHHHHHHH
Confidence 368999999 688888776 6677788866664310 11356777777777654
No 205
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.28 E-value=3.9e-11 Score=105.54 Aligned_cols=126 Identities=28% Similarity=0.413 Sum_probs=87.1
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCC---------------------CceEEecccccccccchhhhhCCCCCCCcccch
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSK---------------------EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENG 78 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (287)
++|+||||+|||++|.++|+.+.... ..++.++.++..... ...+..
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~------------i~~~~v 94 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID------------IIVEQV 94 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc------------chHHHH
Confidence 99999999999999999999995433 344444444333211 011111
Q ss_pred hhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchH
Q 047225 79 GQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQ 154 (287)
Q Consensus 79 ~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~ 154 (287)
+.+.+.... +++.+++|||+|.++.+.+++|++.++.. ..+..||++||...
T Consensus 95 r~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep-----------~~~~~~il~~n~~~------------- 150 (325)
T COG0470 95 RELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP-----------PKNTRFILITNDPS------------- 150 (325)
T ss_pred HHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-----------CCCeEEEEEcCChh-------------
Confidence 223332222 35689999999999999999999999974 24668999998543
Q ss_pred HHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHH
Q 047225 155 MERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIV 193 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il 193 (287)
.+.+.+.+|| ..+.|+|++........
T Consensus 151 -----------~il~tI~SRc-~~i~f~~~~~~~~i~~~ 177 (325)
T COG0470 151 -----------KILPTIRSRC-QRIRFKPPSRLEAIAWL 177 (325)
T ss_pred -----------hccchhhhcc-eeeecCCchHHHHHHHh
Confidence 2346899999 99999996655444433
No 206
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.27 E-value=8.3e-11 Score=102.43 Aligned_cols=155 Identities=19% Similarity=0.369 Sum_probs=96.6
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC---------------ceEEecccccccccch----hh
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE---------------AMVRIDMSEYMEKHTV----SK 64 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~---------------~~~~~~~~~~~~~~~~----~~ 64 (287)
+.++..+... +-.+.++|+||+|+||+++|.++++.+..... .+..+......+.... ..
T Consensus 14 ~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~ 92 (314)
T PRK07399 14 ELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAE 92 (314)
T ss_pred HHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhh
Confidence 3444444443 22246999999999999999999999844320 0011110000000000 00
Q ss_pred hhC---CCCCCCcccchhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEee
Q 047225 65 FFG---SPPGYVGFENGGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTS 137 (287)
Q Consensus 65 ~~~---~~~~~~~~~~~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~ 137 (287)
..| ...+..+.+..+.+.+.+.. +++.|++||++|+++....++|++.+++. +++.||+.+
T Consensus 93 ~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEP------------p~~~fILi~ 160 (314)
T PRK07399 93 EAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEP------------GNGTLILIA 160 (314)
T ss_pred hccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCC------------CCCeEEEEE
Confidence 000 00011122223344444443 45689999999999999999999999983 244677766
Q ss_pred cCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHH
Q 047225 138 NIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIM 196 (287)
Q Consensus 138 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~ 196 (287)
+... .+.|.+.||+ ..+.|+|++.+++.+++...
T Consensus 161 ~~~~------------------------~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 161 PSPE------------------------SLLPTIVSRC-QIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred CChH------------------------hCcHHHHhhc-eEEecCCCCHHHHHHHHHHh
Confidence 5432 3458899999 99999999999999998654
No 207
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.27 E-value=1.3e-12 Score=122.06 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=103.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhH--HHHHHhCCcEEEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQL--TEAVRHRPHSVILF 95 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~il~i 95 (287)
-|+||+|.||||||.+.+.+++..+.. -++....+.-.. .+ ......+. .| .+. ..++.....+|++|
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~--vytsgkgss~~G-LT-Aav~rd~~--tg----e~~LeaGALVlAD~Gv~cI 389 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRG--VYTSGKGSSAAG-LT-AAVVRDKV--TG----EWVLEAGALVLADGGVCCI 389 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCce--EEEccccccccC-ce-eEEEEccC--CC----eEEEeCCEEEEecCCEEEE
Confidence 479999999999999999999887321 111111111000 00 00000000 01 011 22344456689999
Q ss_pred cCcccccHHHHHHHHHhhcCceeecCC-Cceeec-cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHh
Q 047225 96 DEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLN 173 (287)
Q Consensus 96 Deid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (287)
||+|+|+.....+|...|+++.++.++ |..-.+ ..+-+++++||....+.. ...+.+.+ .|+++|++
T Consensus 390 DEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~-----~~~~~enI------~l~~~lLS 458 (682)
T COG1241 390 DEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDP-----KKTVAENI------NLPAPLLS 458 (682)
T ss_pred EeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCC-----CCCHHHhc------CCChhHHh
Confidence 999999999999999999999999887 644444 478999999997653322 22222222 68899999
Q ss_pred ccCce-EEeCCCCHHHHHHHHHHHHHH
Q 047225 174 RIDEV-IVFRQLNKMQLMEIVDIMLKE 199 (287)
Q Consensus 174 r~~~~-i~~~~~~~~~~~~il~~~l~~ 199 (287)
|||.+ +....++.+.-..+..+.+..
T Consensus 459 RFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 459 RFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred hCCeeEEecCCCCccchHHHHHHHHHH
Confidence 99976 556667766556666666544
No 208
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.24 E-value=6.6e-11 Score=93.43 Aligned_cols=131 Identities=25% Similarity=0.342 Sum_probs=75.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceE-Eecccccc--cccchh--hhhCCCCC--CCcccchhhHHHHHHh----
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMV-RIDMSEYM--EKHTVS--KFFGSPPG--YVGFENGGQLTEAVRH---- 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~-~~~~~~~~--~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~---- 87 (287)
.++|+||+|+||+++|..+++.+......-. .-.|.... ....-. ..+..... ..+.+....+.+.+..
T Consensus 21 a~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~ 100 (162)
T PF13177_consen 21 ALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLSPSE 100 (162)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS-TT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999844322110 00010000 000000 00111100 1122222233333222
Q ss_pred CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 88 RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 88 ~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
+++.|++|||+|++..+.+++|++.||+. ..++.+|++++... .+
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEep-----------p~~~~fiL~t~~~~------------------------~i 145 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEP-----------PENTYFILITNNPS------------------------KI 145 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHST-----------TTTEEEEEEES-GG------------------------GS
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCC-----------CCCEEEEEEECChH------------------------HC
Confidence 35689999999999999999999999984 23667887776543 45
Q ss_pred ChhHHhccCceEEeCCCC
Q 047225 168 RPEFLNRIDEVIVFRQLN 185 (287)
Q Consensus 168 ~~~l~~r~~~~i~~~~~~ 185 (287)
.+.+.||+ ..+.|+|+|
T Consensus 146 l~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 146 LPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp -HHHHTTS-EEEEE----
T ss_pred hHHHHhhc-eEEecCCCC
Confidence 68999999 999999875
No 209
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.23 E-value=4.6e-11 Score=117.80 Aligned_cols=151 Identities=29% Similarity=0.401 Sum_probs=119.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCC-CCCC----cccchhhHHHHHHhCCcEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSP-PGYV----GFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~il 93 (287)
+++|-|.||+|||+++.+||+.. +.+++.+|.++..+ +.++||+. |+.. .+.. .++..+++.++ ++
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~t---G~kliRINLSeQTd---L~DLfGsd~Pve~~Gef~w~d-apfL~amr~G~--WV 1615 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKT---GKKLIRINLSEQTD---LCDLFGSDLPVEEGGEFRWMD-APFLHAMRDGG--WV 1615 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHh---cCceEEeeccccch---HHHHhCCCCCcccCceeEecc-cHHHHHhhcCC--EE
Confidence 49999999999999999999998 78999999998775 47788864 2222 2333 46777888776 99
Q ss_pred EEcCcccccHHHHHHHHHhhcCc-eeecCC-Cceeec-cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 94 LFDEIEKAHRDVLNVMLQLLDDG-RVTDGK-GQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 94 ~iDeid~~~~~~~~~L~~~l~~~-~~~~~~-g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
++||++.++..+++.|..-++.+ +.++++ +...+. +++.|+++-||...+. -++.++..
T Consensus 1616 lLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qgg------------------GRKgLPkS 1677 (4600)
T COG5271 1616 LLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGG------------------GRKGLPKS 1677 (4600)
T ss_pred EeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCC------------------CcccCCHH
Confidence 99999999999999999999865 455554 444444 7899999999865443 13468899
Q ss_pred HHhccCceEEeCCCCHHHHHHHHHHHH
Q 047225 171 FLNRIDEVIVFRQLNKMQLMEIVDIML 197 (287)
Q Consensus 171 l~~r~~~~i~~~~~~~~~~~~il~~~l 197 (287)
|++|| ..|.+..++.+++..|+.+..
T Consensus 1678 F~nRF-svV~~d~lt~dDi~~Ia~~~y 1703 (4600)
T COG5271 1678 FLNRF-SVVKMDGLTTDDITHIANKMY 1703 (4600)
T ss_pred Hhhhh-heEEecccccchHHHHHHhhC
Confidence 99999 899999999999988886554
No 210
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.22 E-value=3.8e-10 Score=94.31 Aligned_cols=111 Identities=23% Similarity=0.345 Sum_probs=85.9
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhh-ccCCchHHHHHHHHHHHhcCCh
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARE-SILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
+++||||++.++-+-...|.+.++..- ..++||++|.+-..+.+. +..+-+ .+++
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~i------------aPivifAsNrG~~~irGt~d~~sPh------------Gip~ 353 (456)
T KOG1942|consen 298 GVLFIDEVHMLDIECFTYLHKALESPI------------APIVIFASNRGMCTIRGTEDILSPH------------GIPP 353 (456)
T ss_pred cceEeeehhhhhhHHHHHHHHHhcCCC------------CceEEEecCCcceeecCCcCCCCCC------------CCCH
Confidence 899999999999999999999998632 236999999987665442 111111 3678
Q ss_pred hHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
+|++|+ .+|...+++.+++++|++...+.. .+.+++++++.++...- -+.+|.+++
T Consensus 354 dllDRl-~Iirt~~y~~~e~r~Ii~~Ra~~E---------~l~~~e~a~~~l~~~gt-----~tsLRy~vq 409 (456)
T KOG1942|consen 354 DLLDRL-LIIRTLPYDEEEIRQIIKIRAQVE---------GLQVEEEALDLLAEIGT-----STSLRYAVQ 409 (456)
T ss_pred HHhhhe-eEEeeccCCHHHHHHHHHHHHhhh---------cceecHHHHHHHHhhcc-----chhHHHHHH
Confidence 999999 999999999999999996654432 57999999999988642 256777776
No 211
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=5.5e-10 Score=103.11 Aligned_cols=178 Identities=20% Similarity=0.240 Sum_probs=115.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCC-CceEEeccccccccc--chhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSK-EAMVRIDMSEYMEKH--TVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
++++|.||+|+|||.|++++.+.+..+. .++..++|+...... ..+..+ ...+.+.+...| +|++
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------~~vfse~~~~~P-SiIv 499 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFL-----------NNVFSEALWYAP-SIIV 499 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHH-----------HHHHHHHHhhCC-cEEE
Confidence 4799999999999999999999985332 344577888766442 122222 234555666666 8999
Q ss_pred EcCcccccH---------H-----HHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHH
Q 047225 95 FDEIEKAHR---------D-----VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVA 160 (287)
Q Consensus 95 iDeid~~~~---------~-----~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
+|++|-+-. + ....|.+++.. +...+. ...+|++++.-.
T Consensus 500 LDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~---y~~~~~-----~ia~Iat~qe~q------------------- 552 (952)
T KOG0735|consen 500 LDDLDCLASASSNENGQDGVVSERLAAFLNQVIKI---YLKRNR-----KIAVIATGQELQ------------------- 552 (952)
T ss_pred EcchhhhhccCcccCCcchHHHHHHHHHHHHHHHH---HHccCc-----EEEEEEechhhh-------------------
Confidence 999995421 1 12223333332 111111 236777776421
Q ss_pred HHHHhcCChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHH
Q 047225 161 EELRRRFRPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRA 238 (287)
Q Consensus 161 ~~~~~~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~ 238 (287)
.+++-|. .+|+..+.+++|+..+..+|+...+.+.. ..+..+.++.++.. ..++.+.++...
T Consensus 553 -----tl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~---------~~~~~~dLd~ls~~--TEGy~~~DL~if 616 (952)
T KOG0735|consen 553 -----TLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNL---------SDITMDDLDFLSVK--TEGYLATDLVIF 616 (952)
T ss_pred -----hcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhh---------hhhhhHHHHHHHHh--cCCccchhHHHH
Confidence 1222222 37878899999999999999998887532 34455666776654 456788999999
Q ss_pred HHHHHHHHHHHH
Q 047225 239 IGRLLEDNLAEI 250 (287)
Q Consensus 239 i~~~~~~~~~~~ 250 (287)
+++++..+..+.
T Consensus 617 VeRai~~a~ler 628 (952)
T KOG0735|consen 617 VERAIHEAFLER 628 (952)
T ss_pred HHHHHHHHHHHH
Confidence 999999777433
No 212
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=2.3e-10 Score=100.66 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=93.7
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccch-----hhh--hCCCCCCCccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTV-----SKF--FGSPPGYVGFE 76 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~ 76 (287)
+.++..+.. ++..+.++|+||+|+||+++|+.+++.+.-....- ...|..-.....+ .++ +.......+.+
T Consensus 16 ~~L~~~~~~-~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~-~~~cg~C~~c~~~~~~~hpD~~~i~~~~~~i~id 93 (329)
T PRK08058 16 KMLQNSIAK-NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNG-VEPCGTCTNCKRIDSGNHPDVHLVAPDGQSIKKD 93 (329)
T ss_pred HHHHHHHHc-CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCcCHHHHHHhcCCCCCEEEeccccccCCHH
Confidence 344444443 33333579999999999999999999984321000 0011110000000 000 00000111222
Q ss_pred chhhHHHHHH----hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCc
Q 047225 77 NGGQLTEAVR----HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGS 152 (287)
Q Consensus 77 ~~~~~~~~~~----~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~ 152 (287)
+...+.+.+. .+++.|++|||+|+++...+++|++.+|+. .+++.+|++++...
T Consensus 94 ~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-----------p~~~~~Il~t~~~~----------- 151 (329)
T PRK08058 94 QIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP-----------SGGTTAILLTENKH----------- 151 (329)
T ss_pred HHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC-----------CCCceEEEEeCChH-----------
Confidence 2233333333 244679999999999999999999999983 23556777775432
Q ss_pred hHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHH
Q 047225 153 DQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDI 195 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~ 195 (287)
.+.+.+.||+ ..+.|+|++.+++.+++..
T Consensus 152 -------------~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 152 -------------QILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred -------------hCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 3457899999 9999999999998887753
No 213
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=1.3e-10 Score=101.74 Aligned_cols=72 Identities=17% Similarity=0.194 Sum_probs=59.5
Q ss_pred CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 88 RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 88 ~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
+++.|++||++|+++....++|++.+|+. .++++||++|+... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-----------p~~t~fiL~t~~~~------------------------~L 175 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEP-----------PPGTVFLLVSARID------------------------RL 175 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCC-----------CcCcEEEEEECChh------------------------hC
Confidence 44679999999999999999999999973 23566777765532 45
Q ss_pred ChhHHhccCceEEeCCCCHHHHHHHHHH
Q 047225 168 RPEFLNRIDEVIVFRQLNKMQLMEIVDI 195 (287)
Q Consensus 168 ~~~l~~r~~~~i~~~~~~~~~~~~il~~ 195 (287)
.|.+.||| ..+.|+|++.+++.+++..
T Consensus 176 LpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 176 LPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred cHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 68899999 9999999999999988854
No 214
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.2e-10 Score=112.51 Aligned_cols=181 Identities=25% Similarity=0.339 Sum_probs=120.2
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
+|. -++|+||||||||..|+++|..+..... -+.+.+..-.+. +...+|.. -.+...+++..+.....|+|
T Consensus 298 pPr-gvL~~GppGTGkTl~araLa~~~s~~~~-kisffmrkgaD~--lskwvgEa-----ERqlrllFeeA~k~qPSIIf 368 (1080)
T KOG0732|consen 298 PPR-GVLFHGPPGTGKTLMARALAAACSRGNR-KISFFMRKGADC--LSKWVGEA-----ERQLRLLFEEAQKTQPSIIF 368 (1080)
T ss_pred CCc-ceeecCCCCCchhHHHHhhhhhhccccc-ccchhhhcCchh--hccccCcH-----HHHHHHHHHHHhccCceEEe
Confidence 344 4999999999999999999999843222 222222221111 11111110 01124577788888889999
Q ss_pred EcCcccccH-----------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 95 FDEIEKAHR-----------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 95 iDeid~~~~-----------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
+||||.+.| .+...|+.+|+.-. +. +.+++|.++|.+..
T Consensus 369 fdeIdGlapvrSskqEqih~SIvSTLLaLmdGld---sR------gqVvvigATnRpda--------------------- 418 (1080)
T KOG0732|consen 369 FDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLD---SR------GQVVVIGATNRPDA--------------------- 418 (1080)
T ss_pred ccccccccccccchHHHhhhhHHHHHHHhccCCC---CC------CceEEEcccCCccc---------------------
Confidence 999996533 46667788887411 01 25678999998753
Q ss_pred HhcCChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHH
Q 047225 164 RRRFRPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 164 ~~~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
+.|+|. .||+..++|+-|+.+...+|+...-. .-...+....+.+++...- +++..+++..+..
T Consensus 419 ---~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtr---------kw~~~i~~~l~~~la~~t~--gy~gaDlkaLCTe 484 (1080)
T KOG0732|consen 419 ---IDPALRRPGRFDREFYFPLPDVDARAKILDIHTR---------KWEPPISRELLLWLAEETS--GYGGADLKALCTE 484 (1080)
T ss_pred ---cchhhcCCcccceeEeeeCCchHHHHHHHHHhcc---------CCCCCCCHHHHHHHHHhcc--ccchHHHHHHHHH
Confidence 356774 78999999999999999999843321 1235788899999988643 4455678888887
Q ss_pred HHHHHHH
Q 047225 242 LLEDNLA 248 (287)
Q Consensus 242 ~~~~~~~ 248 (287)
+...++-
T Consensus 485 Aal~~~~ 491 (1080)
T KOG0732|consen 485 AALIALR 491 (1080)
T ss_pred Hhhhhhc
Confidence 7776653
No 215
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.20 E-value=4.4e-11 Score=100.92 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=105.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC-C--CceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHH-------hC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS-K--EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVR-------HR 88 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 88 (287)
|++|+||||||||+...+.+..++.. + ......+.++......+.. ....+...+ ..
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rgid~vr~-------------qi~~fast~~~~~fst~~ 130 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRGIDPVRQ-------------QIHLFASTQQPTTYSTHA 130 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccCCcchHH-------------HHHHHHhhccceeccccC
Confidence 79999999999999999999998652 1 1112223332222111111 112222222 23
Q ss_pred CcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCC
Q 047225 89 PHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFR 168 (287)
Q Consensus 89 ~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
.+..+++||+|.+..+.|++|++.++... .++.|++.+|+... +.
T Consensus 131 ~fKlvILDEADaMT~~AQnALRRviek~t-----------~n~rF~ii~n~~~k------------------------i~ 175 (360)
T KOG0990|consen 131 AFKLVILDEADAMTRDAQNALRRVIEKYT-----------ANTRFATISNPPQK------------------------IH 175 (360)
T ss_pred ceeEEEecchhHhhHHHHHHHHHHHHHhc-----------cceEEEEeccChhh------------------------cC
Confidence 66899999999999999999999777532 25577788887654 35
Q ss_pred hhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 169 PEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 169 ~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
|++.+|| ..+.|.|++.......+.+.++.. ....+++....++.... .+++++++
T Consensus 176 pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e---------~~~~~~~~~~a~~r~s~------gDmr~a~n 231 (360)
T KOG0990|consen 176 PAQQSRC-TRFRFAPLTMAQQTERQSHIRESE---------QKETNPEGYSALGRLSV------GDMRVALN 231 (360)
T ss_pred chhhccc-ccCCCCCCChhhhhhHHHHHHhcc---------hhhcCHHHHHHHHHHhH------HHHHHHHH
Confidence 8999999 999999999988888887776542 23455565555555432 56666666
No 216
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=2.3e-10 Score=99.59 Aligned_cols=142 Identities=15% Similarity=0.233 Sum_probs=93.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc-----cc---hhhhhCCCCCCCcccchhhHHHHHHh--
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK-----HT---VSKFFGSPPGYVGFENGGQLTEAVRH-- 87 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-- 87 (287)
+.++|.||+|+||+++|+.+|+.+.-....- .-.|+.-... .. +..+........+.++.+.+.+.+..
T Consensus 25 HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 25 HALLFKADSGLGTEQLIRALAQWLMCQTPQG-DQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred eeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 3589999999999999999999883211100 0012111000 00 00000001112334444444444443
Q ss_pred --CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHh
Q 047225 88 --RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRR 165 (287)
Q Consensus 88 --~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (287)
+++.|++||++|+++....++|++.+|+. .+++.||++|+...
T Consensus 104 ~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-----------p~~~~fiL~t~~~~------------------------ 148 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTEAAANALLKTLEEP-----------RPNTYFLLQADLSA------------------------ 148 (325)
T ss_pred ccCCceEEEEechhhhCHHHHHHHHHHhcCC-----------CCCeEEEEEECChH------------------------
Confidence 44589999999999999999999999983 24567777776543
Q ss_pred cCChhHHhccCceEEeCCCCHHHHHHHHHHH
Q 047225 166 RFRPEFLNRIDEVIVFRQLNKMQLMEIVDIM 196 (287)
Q Consensus 166 ~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~ 196 (287)
.+.|.+.||| ..+.|+|++.+++.+.+...
T Consensus 149 ~llpTI~SRC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 149 ALLPTIYSRC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred hCchHHHhhc-eEEeCCCCCHHHHHHHHHHH
Confidence 3458899999 99999999999999888654
No 217
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.19 E-value=4.4e-10 Score=106.11 Aligned_cols=132 Identities=16% Similarity=0.231 Sum_probs=83.8
Q ss_pred HHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCc------ee---ec-cceEEEEeecCCchhhhhhccCCchH
Q 047225 85 VRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ------TV---DL-KNTIIIMTSNIGDSVIARESILGSDQ 154 (287)
Q Consensus 85 ~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~------~i---~~-~~~~iI~t~n~~~~~~~~~~~~~~~~ 154 (287)
+.....++|||||++.+++..|..|+++++++.+....+. .+ .. -++.+|+++|+..
T Consensus 213 L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~------------- 279 (608)
T TIGR00764 213 IHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD------------- 279 (608)
T ss_pred eEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH-------------
Confidence 3344558999999999999999999999999887764321 11 11 2778999998631
Q ss_pred HHHHHHHHHHhcCChhHHhccC---ceEEeCC---CCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccC-
Q 047225 155 MERGVAEELRRRFRPEFLNRID---EVIVFRQ---LNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYN- 227 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~r~~---~~i~~~~---~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~- 227 (287)
...+.++|.+||+ ..+.|++ .+.+...++++..... +...|....+++++++.+.+....
T Consensus 280 ---------l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~----~~r~G~l~~~s~~Av~~Li~~~~R~ 346 (608)
T TIGR00764 280 ---------LEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQE----VKKDGRIPHFTRDAVEEIVREAQRR 346 (608)
T ss_pred ---------HhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHH----HHHhCCCCcCCHHHHHHHHHHHHHH
Confidence 1246899999997 4555543 3455555554433322 222233357899999999754211
Q ss_pred ------CCCCchhHHHHHHHH
Q 047225 228 ------PSYGARPLRRAIGRL 242 (287)
Q Consensus 228 ------~~~~~r~l~~~i~~~ 242 (287)
-....|++.+.+..+
T Consensus 347 ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 347 AGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred HhcccccCCCHHHHHHHHHHH
Confidence 122345666655544
No 218
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=1.5e-10 Score=102.84 Aligned_cols=154 Identities=14% Similarity=0.248 Sum_probs=92.5
Q ss_pred hhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC---c-e----EEe-cccccccccch-----hhhh--CC-
Q 047225 6 ARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKE---A-M----VRI-DMSEYMEKHTV-----SKFF--GS- 68 (287)
Q Consensus 6 ~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~---~-~----~~~-~~~~~~~~~~~-----~~~~--~~- 68 (287)
++..+.+..-| +.++|+||+|+||+++|..+|+.+.-... . . ... .|........+ .++. ..
T Consensus 31 L~~~~~~~rl~-HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~ 109 (365)
T PRK07471 31 LLDAYRSGRLH-HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERS 109 (365)
T ss_pred HHHHHHcCCCC-ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecc
Confidence 44444443323 24999999999999999999999842211 0 0 000 01100000000 0000 00
Q ss_pred --CC-----CCCcccchhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEee
Q 047225 69 --PP-----GYVGFENGGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTS 137 (287)
Q Consensus 69 --~~-----~~~~~~~~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~ 137 (287)
.. ...+.++.+.+.+.+.. +.+.|++|||+|.++...++.|++.+++.. ++.+||++|
T Consensus 110 ~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp-----------~~~~~IL~t 178 (365)
T PRK07471 110 WNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPP-----------ARSLFLLVS 178 (365)
T ss_pred cccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCC-----------CCeEEEEEE
Confidence 00 11112222333333332 445799999999999999999999999731 244567666
Q ss_pred cCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHH
Q 047225 138 NIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIM 196 (287)
Q Consensus 138 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~ 196 (287)
+... .+.+.+.+|+ ..+.|+|++.+++.+++...
T Consensus 179 ~~~~------------------------~llpti~SRc-~~i~l~~l~~~~i~~~L~~~ 212 (365)
T PRK07471 179 HAPA------------------------RLLPTIRSRC-RKLRLRPLAPEDVIDALAAA 212 (365)
T ss_pred CCch------------------------hchHHhhccc-eEEECCCCCHHHHHHHHHHh
Confidence 5542 2346788999 99999999999999998764
No 219
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=7e-10 Score=104.29 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=46.7
Q ss_pred CChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEe-ChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 167 FRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTV-THTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 167 ~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i-~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
+.+++++ |+ ..|.|+|++...+.+.+...+......+. ....+ ++++++.|+..+. +++|.+|+.+
T Consensus 256 L~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~---~~~~~p~~~~l~~I~~~s~------GDiRsAIn~L 324 (637)
T TIGR00602 256 MNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNG---EKIKVPKKTSVELLCQGCS------GDIRSAINSL 324 (637)
T ss_pred cCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccc---cccccCCHHHHHHHHHhCC------ChHHHHHHHH
Confidence 4478887 55 67999999999999999888876433221 12223 5788888887543 6888888844
No 220
>PRK12377 putative replication protein; Provisional
Probab=99.18 E-value=3.6e-11 Score=100.90 Aligned_cols=106 Identities=19% Similarity=0.426 Sum_probs=72.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
.+++|+||||||||+|+.++++.+...+..+++++..+..... ...+.. + .....+...+...+ +|+|||
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l--~~~~~~-----~-~~~~~~l~~l~~~d--LLiIDD 171 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL--HESYDN-----G-QSGEKFLQELCKVD--LLVLDE 171 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH--HHHHhc-----c-chHHHHHHHhcCCC--EEEEcC
Confidence 3699999999999999999999997666777777776554321 111110 0 01123445555544 999999
Q ss_pred cc--cccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchh
Q 047225 98 IE--KAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSV 143 (287)
Q Consensus 98 id--~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~ 143 (287)
+. ..+...+..|..+++.+... ...+|+|||.....
T Consensus 172 lg~~~~s~~~~~~l~~ii~~R~~~----------~~ptiitSNl~~~~ 209 (248)
T PRK12377 172 IGIQRETKNEQVVLNQIIDRRTAS----------MRSVGMLTNLNHEA 209 (248)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhc----------CCCEEEEcCCCHHH
Confidence 94 56777888999999975322 12489999987543
No 221
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=1.9e-10 Score=99.98 Aligned_cols=141 Identities=17% Similarity=0.238 Sum_probs=89.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCC-ceEEecccccccccchhh--hhCCCCC--------CCcccchhhHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKE-AMVRIDMSEYMEKHTVSK--FFGSPPG--------YVGFENGGQLTEAVRH 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~ 87 (287)
.++|+||+|+||+++|..+|+.+.-... ..-...+-......+=.+ .+...+. ..+.+..+.+.+.+..
T Consensus 28 A~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~ 107 (319)
T PRK08769 28 GLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLAL 107 (319)
T ss_pred eEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHhh
Confidence 4999999999999999999998843221 100000000000000000 0000011 1122223334443333
Q ss_pred ----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 88 ----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 88 ----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
+++.|++||++|+++....++|++.+|+. .+++.||++++...
T Consensus 108 ~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-----------p~~~~fiL~~~~~~---------------------- 154 (319)
T PRK08769 108 TPQYGIAQVVIVDPADAINRAACNALLKTLEEP-----------SPGRYLWLISAQPA---------------------- 154 (319)
T ss_pred CcccCCcEEEEeccHhhhCHHHHHHHHHHhhCC-----------CCCCeEEEEECChh----------------------
Confidence 34579999999999999999999999983 23567777776543
Q ss_pred HhcCChhHHhccCceEEeCCCCHHHHHHHHHH
Q 047225 164 RRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDI 195 (287)
Q Consensus 164 ~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~ 195 (287)
.+.|.+.||| ..+.|++|+.++..+++..
T Consensus 155 --~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 155 --RLPATIRSRC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred --hCchHHHhhh-eEeeCCCcCHHHHHHHHHH
Confidence 3458899999 9999999999998888854
No 222
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=7.4e-10 Score=97.28 Aligned_cols=142 Identities=12% Similarity=0.116 Sum_probs=92.7
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccccc--------chhhhhCCCC-CCCcccchhhHHHHHHh
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKH--------TVSKFFGSPP-GYVGFENGGQLTEAVRH 87 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 87 (287)
.+.++|.||+|+||+++|..+|+.+.-.... -...|+.-.... .+..+..... ...+.++.+.+.+.+..
T Consensus 24 ~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~-~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 24 HHALLIQALPGMGDDALIYALSRWLMCQQPQ-GHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred ceEEeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 3459999999999999999999998321100 000222110000 0000111100 12333344445544443
Q ss_pred ----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 88 ----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 88 ----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
+++.|++||++|+|+....++|++.+|+. .++++||+.|+...
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-----------p~~t~fiL~t~~~~---------------------- 149 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTDAAANALLKTLEEP-----------PENTWFFLACREPA---------------------- 149 (334)
T ss_pred ccccCCceEEEEcchHhhCHHHHHHHHHHhcCC-----------CCCeEEEEEECChh----------------------
Confidence 45689999999999999999999999983 23567777776543
Q ss_pred HhcCChhHHhccCceEEeCCCCHHHHHHHHHH
Q 047225 164 RRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDI 195 (287)
Q Consensus 164 ~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~ 195 (287)
.+.|.+.||| ..+.|+|++.+++.+++..
T Consensus 150 --~lLpTIrSRC-q~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 150 --RLLATLRSRC-RLHYLAPPPEQYALTWLSR 178 (334)
T ss_pred --hChHHHHhcc-ccccCCCCCHHHHHHHHHH
Confidence 3458899999 7899999999999988854
No 223
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.17 E-value=1.5e-11 Score=108.17 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=86.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
.|++|+|.||||||.+.+.+++..+ .-++.+....... .+.......+...++. .-.+++.....+|++|||
T Consensus 58 ihiLlvGdpg~gKS~ll~~~~~~~p----r~v~~~g~~~s~~-gLta~~~~d~~~~~~~---leaGalvlad~GiccIDe 129 (331)
T PF00493_consen 58 IHILLVGDPGTGKSQLLKYVAKLAP----RSVYTSGKGSSAA-GLTASVSRDPVTGEWV---LEAGALVLADGGICCIDE 129 (331)
T ss_dssp --EEEECSCHHCHHHHHHCCCCT-S----SEEEEECCGSTCC-CCCEEECCCGGTSSEC---EEE-HHHHCTTSEEEECT
T ss_pred cceeeccchhhhHHHHHHHHHhhCC----ceEEECCCCcccC-CccceeccccccceeE---EeCCchhcccCceeeecc
Confidence 4799999999999999998865542 1222222111110 0000000000000011 112345555668999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCC-Cceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhcc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRI 175 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 175 (287)
+|+++.+....|.+.|+.+.++..+ |....++ ++.|++++||....+... ..+.+. -.++++|++||
T Consensus 130 ~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~-----~~~~~n------i~l~~~LLSRF 198 (331)
T PF00493_consen 130 FDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPN-----KSLSEN------INLPPPLLSRF 198 (331)
T ss_dssp TTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TT-----S-CGCC------T-S-CCCHCC-
T ss_pred cccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchh-----hhhHHh------cccchhhHhhc
Confidence 9999999999999999999999886 6555554 889999999975433111 111111 14778999999
Q ss_pred CceEE-eCCCCHHHHHHHHHHHH
Q 047225 176 DEVIV-FRQLNKMQLMEIVDIML 197 (287)
Q Consensus 176 ~~~i~-~~~~~~~~~~~il~~~l 197 (287)
|.++. ..+++.+.-..+..+.+
T Consensus 199 DLif~l~D~~d~~~D~~la~~il 221 (331)
T PF00493_consen 199 DLIFLLRDKPDEEEDERLAEHIL 221 (331)
T ss_dssp SEEECC--TTT-HHHHHHHHHHH
T ss_pred CEEEEeccccccccccccceEEE
Confidence 97754 57777655555555444
No 224
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=4.1e-10 Score=98.61 Aligned_cols=129 Identities=18% Similarity=0.323 Sum_probs=86.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCC-----CceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh----C
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSK-----EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH----R 88 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 88 (287)
+.++|+||+|+|||++|+.+++.+.... ..+..+... -| ...+.+....+.+.+.. +
T Consensus 27 ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~-----------~~---~~i~v~~ir~~~~~~~~~p~~~ 92 (313)
T PRK05564 27 HAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI-----------NK---KSIGVDDIRNIIEEVNKKPYEG 92 (313)
T ss_pred ceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc-----------cC---CCCCHHHHHHHHHHHhcCcccC
Confidence 3589999999999999999999873211 111112110 00 01111112222232222 3
Q ss_pred CcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCC
Q 047225 89 PHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFR 168 (287)
Q Consensus 89 ~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
++.|++||++|+++...+++|++.+++. ++++.+|++++... .+.
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEep-----------p~~t~~il~~~~~~------------------------~ll 137 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEP-----------PKGVFIILLCENLE------------------------QIL 137 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCC-----------CCCeEEEEEeCChH------------------------hCc
Confidence 4579999999999999999999999973 23556776664322 345
Q ss_pred hhHHhccCceEEeCCCCHHHHHHHHHHH
Q 047225 169 PEFLNRIDEVIVFRQLNKMQLMEIVDIM 196 (287)
Q Consensus 169 ~~l~~r~~~~i~~~~~~~~~~~~il~~~ 196 (287)
+.+.+|+ ..+.|++++.+++..++...
T Consensus 138 ~TI~SRc-~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 138 DTIKSRC-QIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred HHHHhhc-eeeeCCCcCHHHHHHHHHHH
Confidence 7899999 89999999999998888654
No 225
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=5.4e-10 Score=102.52 Aligned_cols=173 Identities=23% Similarity=0.303 Sum_probs=120.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCC-cEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRP-HSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~iDe 97 (287)
.++++||||||||.+++++++.. +..++.+++.+...+ . +|.... ..+..++...... ..++||||
T Consensus 220 g~Ll~gppg~Gkt~l~~aVa~e~---~a~~~~i~~peli~k-----~----~gEte~-~LR~~f~~a~k~~~psii~IdE 286 (693)
T KOG0730|consen 220 GLLLYGPPGTGKTFLVRAVANEY---GAFLFLINGPELISK-----F----PGETES-NLRKAFAEALKFQVPSIIFIDE 286 (693)
T ss_pred CccccCCCCCChHHHHHHHHHHh---CceeEecccHHHHHh-----c----ccchHH-HHHHHHHHHhccCCCeeEeHHh
Confidence 59999999999999999999998 677788888765432 1 111111 1134454444444 78999999
Q ss_pred ccccc----------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 98 IEKAH----------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 98 id~~~----------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
+|.+- ..+...|+++++.-. ..++.+++.++|.+. .+
T Consensus 287 ld~l~p~r~~~~~~e~Rv~sqlltL~dg~~---------~~~~vivl~atnrp~------------------------sl 333 (693)
T KOG0730|consen 287 LDALCPKREGADDVESRVVSQLLTLLDGLK---------PDAKVIVLAATNRPD------------------------SL 333 (693)
T ss_pred HhhhCCcccccchHHHHHHHHHHHHHhhCc---------CcCcEEEEEecCCcc------------------------cc
Confidence 99654 356778888888522 123567888888764 34
Q ss_pred ChhHHh-ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 047225 168 RPEFLN-RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDN 246 (287)
Q Consensus 168 ~~~l~~-r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~ 246 (287)
.+++.+ |||..+.+.-|+..+..+|++.....+ + .. ++..+..++..+. ++...++...+..+..++
T Consensus 334 d~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~-------~--~~-~~~~l~~iA~~th--GyvGaDL~~l~~ea~~~~ 401 (693)
T KOG0730|consen 334 DPALRRGRFDREVEIGIPGSDGRLDILRVLTKKM-------N--LL-SDVDLEDIAVSTH--GYVGADLAALCREASLQA 401 (693)
T ss_pred ChhhhcCCCcceeeecCCCchhHHHHHHHHHHhc-------C--Cc-chhhHHHHHHHcc--chhHHHHHHHHHHHHHHH
Confidence 577774 999999999999999999997776542 2 22 5677777776543 233468888877776666
Q ss_pred HHH
Q 047225 247 LAE 249 (287)
Q Consensus 247 ~~~ 249 (287)
..+
T Consensus 402 ~r~ 404 (693)
T KOG0730|consen 402 TRR 404 (693)
T ss_pred hhh
Confidence 555
No 226
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.14 E-value=7.6e-10 Score=92.77 Aligned_cols=118 Identities=20% Similarity=0.294 Sum_probs=89.9
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
+|+||||++.++-+-...|.+.+++.-.+ ++|+++|.+...+.+.+...-+ .+|-+
T Consensus 290 GVLFIDEvHMLDIEcFsFlNrAlE~d~~P------------iiimaTNrgit~iRGTn~~Sph------------GiP~D 345 (454)
T KOG2680|consen 290 GVLFIDEVHMLDIECFSFLNRALENDMAP------------IIIMATNRGITRIRGTNYRSPH------------GIPID 345 (454)
T ss_pred ceEEEeeehhhhhHHHHHHHHHhhhccCc------------EEEEEcCCceEEeecCCCCCCC------------CCcHH
Confidence 89999999999999999999999974322 5889999886655443221111 36778
Q ss_pred HHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHH
Q 047225 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNL 247 (287)
Q Consensus 171 l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~ 247 (287)
|++|. .+|...|++.+++++|+...+.+. ++.+++++++.+...... ..||.+++-+-...+
T Consensus 346 ~lDR~-lII~t~py~~~d~~~IL~iRc~EE---------dv~m~~~A~d~Lt~i~~~-----tsLRYai~Lit~a~~ 407 (454)
T KOG2680|consen 346 LLDRM-LIISTQPYTEEDIKKILRIRCQEE---------DVEMNPDALDLLTKIGEA-----TSLRYAIHLITAASL 407 (454)
T ss_pred Hhhhh-heeecccCcHHHHHHHHHhhhhhh---------ccccCHHHHHHHHHhhhh-----hhHHHHHHHHHHHHH
Confidence 99999 999999999999999998887653 688999999999887542 356677664433333
No 227
>PRK08116 hypothetical protein; Validated
Probab=99.14 E-value=1.6e-10 Score=98.57 Aligned_cols=108 Identities=18% Similarity=0.347 Sum_probs=71.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+|++|||||+|+.++++.+...+.++++++..++... +...+... +......+.+.+...+ +|+|||+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~--i~~~~~~~----~~~~~~~~~~~l~~~d--lLviDDl 187 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR--IKSTYKSS----GKEDENEIIRSLVNAD--LLILDDL 187 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--HHHHHhcc----ccccHHHHHHHhcCCC--EEEEecc
Confidence 49999999999999999999998655677777777654432 11111110 0011123455555554 9999999
Q ss_pred --ccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 99 --EKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 99 --d~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
+......+..|+.+++.+.-. ...+|+|||..+..+
T Consensus 188 g~e~~t~~~~~~l~~iin~r~~~----------~~~~IiTsN~~~~eL 225 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSRYRK----------GLPTIVTTNLSLEEL 225 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHC----------CCCEEEECCCCHHHH
Confidence 566777788899998864211 235999999876543
No 228
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=5.3e-10 Score=97.12 Aligned_cols=140 Identities=11% Similarity=0.163 Sum_probs=92.1
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc-----cchhhh--hCCC--CCCCcccchhhHHHHHHh-
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK-----HTVSKF--FGSP--PGYVGFENGGQLTEAVRH- 87 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~- 87 (287)
+.++|.||.|+||+++|+.+|+.+.-.... ...|+.-... ..-.++ +... ....+.++.+.+.+.+..
T Consensus 26 hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~--~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 26 GALLLQSDEGLGVESLVELFSRALLCQNYQ--SEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred eeEeeECCCCCCHHHHHHHHHHHHcCCCCC--CCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 469999999999999999999988322211 0112211100 000011 1000 111233333444444433
Q ss_pred ---CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 88 ---RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 88 ---~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
+++.|++||++|+++....++|++.+|+. .+++.||+.|+...
T Consensus 104 ~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-----------p~~t~fiL~t~~~~----------------------- 149 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMNESASNALLKTLEEP-----------APNCLFLLVTHNQK----------------------- 149 (319)
T ss_pred cccCCceEEEecchhhhCHHHHHHHHHHhcCC-----------CCCeEEEEEECChh-----------------------
Confidence 34689999999999999999999999983 24567787776543
Q ss_pred hcCChhHHhccCceEEeCCCCHHHHHHHHHH
Q 047225 165 RRFRPEFLNRIDEVIVFRQLNKMQLMEIVDI 195 (287)
Q Consensus 165 ~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~ 195 (287)
.+.|.+.||| ..+.|+||+.+++.+++..
T Consensus 150 -~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 150 -RLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred -hChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 3458899999 9999999999999888854
No 229
>PF13173 AAA_14: AAA domain
Probab=99.14 E-value=4.1e-10 Score=85.44 Aligned_cols=124 Identities=23% Similarity=0.348 Sum_probs=82.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|.||.|||||++++.+++.+. ....++++++.+.........-+ ...+.+... .+..++||||+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~i~iDEi 70 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLADPDL-----------LEYFLELIK-PGKKYIFIDEI 70 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhhhhh-----------HHHHHHhhc-cCCcEEEEehh
Confidence 599999999999999999999885 45678888887765421100000 012222211 24479999999
Q ss_pred ccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCce
Q 047225 99 EKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEV 178 (287)
Q Consensus 99 d~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~ 178 (287)
++++ ++...+..+.+.+ ++..+|+|++..... .......+..|. ..
T Consensus 71 q~~~-~~~~~lk~l~d~~------------~~~~ii~tgS~~~~l--------------------~~~~~~~l~gr~-~~ 116 (128)
T PF13173_consen 71 QYLP-DWEDALKFLVDNG------------PNIKIILTGSSSSLL--------------------SKDIAESLAGRV-IE 116 (128)
T ss_pred hhhc-cHHHHHHHHHHhc------------cCceEEEEccchHHH--------------------hhcccccCCCeE-EE
Confidence 9997 7888888888864 234566666542211 112235667887 78
Q ss_pred EEeCCCCHHHH
Q 047225 179 IVFRQLNKMQL 189 (287)
Q Consensus 179 i~~~~~~~~~~ 189 (287)
+.+.|++..|.
T Consensus 117 ~~l~Plsf~E~ 127 (128)
T PF13173_consen 117 IELYPLSFREF 127 (128)
T ss_pred EEECCCCHHHh
Confidence 99999998774
No 230
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.12 E-value=6.2e-11 Score=103.58 Aligned_cols=108 Identities=18% Similarity=0.298 Sum_probs=72.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
.+++|+||+|||||+|+.++++.+...+..+++++..++........ +. .........+.+...+ +|+|||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~-~~------~~~~~~~~~~~l~~~D--LLIIDD 254 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIR-FN------NDKELEEVYDLLINCD--LLIIDD 254 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHH-hc------cchhHHHHHHHhccCC--EEEEec
Confidence 46999999999999999999999977777888888776544311110 00 0000111234455554 999999
Q ss_pred ccc--ccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 98 IEK--AHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 98 id~--~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
+.. .++..+..|+.+++.+... +..+|+|||.++..+
T Consensus 255 lG~e~~t~~~~~~Lf~iin~R~~~----------~k~tIiTSNl~~~el 293 (329)
T PRK06835 255 LGTEKITEFSKSELFNLINKRLLR----------QKKMIISTNLSLEEL 293 (329)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHC----------CCCEEEECCCCHHHH
Confidence 964 4667778899998864321 124899999876543
No 231
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.10 E-value=7e-10 Score=92.92 Aligned_cols=199 Identities=18% Similarity=0.278 Sum_probs=133.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHh---cCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEY---FGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~ 94 (287)
+++|.||+|.|||.+++.+.+.- ..-+.+++.+||...........+||+..|. +|... .-...+++...+.+|
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~--~r~gllrsadggmlf 287 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARE--SREGLLRSADGGMLF 287 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchh--hhhhhhccCCCceEe
Confidence 69999999999999999988753 2235789999999988777788899887664 33332 334567777888999
Q ss_pred EcCcccccHHHHHHHHHhhcCcee-ecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHh
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDGRV-TDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLN 173 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~~~-~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (287)
+||+..+..+-|..|++.+++.++ +.+.++.+. +++.+|..+-. ++.+. .-+..|..+|..
T Consensus 288 ldeigelgadeqamllkaieekrf~pfgsdr~v~-sdfqliagtvr--------------dlrq~---vaeg~fredl~a 349 (531)
T COG4650 288 LDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVS-SDFQLIAGTVR--------------DLRQL---VAEGKFREDLYA 349 (531)
T ss_pred hHhhhhcCccHHHHHHHHHHhhccCCCCCccccc-cchHHhhhhHH--------------HHHHH---HhccchHHHHHH
Confidence 999999999999999999987654 343333331 35555554422 22222 234678899999
Q ss_pred ccC-ceEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh------ccCCCCCchhHHHHHHHH
Q 047225 174 RID-EVIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE------GYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 174 r~~-~~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~------~~~~~~~~r~l~~~i~~~ 242 (287)
|+. +++.+|-+. .+++..=+...|.+... ..|..+.+.-++...-..- .|.. +-|++...+.++
T Consensus 350 rinlwtf~lpgl~qr~ediepnldyelerha~---~~g~~vrfntearra~l~fa~spqa~w~g--nfrelsasvtrm 422 (531)
T COG4650 350 RINLWTFTLPGLRQRQEDIEPNLDYELERHAS---LTGDSVRFNTEARRAWLAFATSPQATWRG--NFRELSASVTRM 422 (531)
T ss_pred hhheeeeeccccccCccccCCCccHHHHHHHH---hhCceeeeehHHHHHHHHhccCcchhhcc--cHHHHhHHHHHH
Confidence 994 346666555 45555555556655433 2355677777776554432 3433 336776666654
No 232
>PRK08181 transposase; Validated
Probab=99.09 E-value=2.1e-10 Score=97.41 Aligned_cols=104 Identities=16% Similarity=0.249 Sum_probs=69.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||+|+.+++..+...+..+++++..+.......... . .....+...+... .+|+|||+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~--------~-~~~~~~l~~l~~~--dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARR--------E-LQLESAIAKLDKF--DLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHh--------C-CcHHHHHHHHhcC--CEEEEecc
Confidence 69999999999999999999988666677777777655443211100 0 0012334444444 49999999
Q ss_pred cccc--HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 99 EKAH--RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 99 d~~~--~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
...+ ...+..|+++++.+... ..+|+|||.+...+
T Consensus 177 g~~~~~~~~~~~Lf~lin~R~~~-----------~s~IiTSN~~~~~w 213 (269)
T PRK08181 177 AYVTKDQAETSVLFELISARYER-----------RSILITANQPFGEW 213 (269)
T ss_pred ccccCCHHHHHHHHHHHHHHHhC-----------CCEEEEcCCCHHHH
Confidence 8653 45567899999864221 24899999886554
No 233
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.08 E-value=8.4e-10 Score=84.18 Aligned_cols=92 Identities=26% Similarity=0.267 Sum_probs=57.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhh---hh-CCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK---FF-GSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
+++|+||||||||++++.++..+......++.++++.......... .. .......+......+...+......+++
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6999999999999999999999955444577888776544322110 01 0111111122223444555554457999
Q ss_pred EcCcccccHHHHHHHH
Q 047225 95 FDEIEKAHRDVLNVML 110 (287)
Q Consensus 95 iDeid~~~~~~~~~L~ 110 (287)
+||++.+.........
T Consensus 84 iDei~~~~~~~~~~~~ 99 (148)
T smart00382 84 LDEITSLLDAEQEALL 99 (148)
T ss_pred EECCcccCCHHHHHHH
Confidence 9999988776555443
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.08 E-value=1e-10 Score=93.63 Aligned_cols=104 Identities=21% Similarity=0.323 Sum_probs=69.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||+|||||++|.++++.+...+....+++..+..+..... .. ......+.+.+...+ +|+|||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~--~~-------~~~~~~~~~~l~~~d--lLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS--RS-------DGSYEELLKRLKRVD--LLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC--HC-------CTTHCHHHHHHHTSS--CEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc--cc-------ccchhhhcCcccccc--Eeccccc
Confidence 699999999999999999999887777888888877665432111 10 111234556666665 9999999
Q ss_pred ccc--cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 99 EKA--HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 99 d~~--~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
... +....+.|+++++.+.. +...|+|||.....+
T Consensus 118 G~~~~~~~~~~~l~~ii~~R~~-----------~~~tIiTSN~~~~~l 154 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDERYE-----------RKPTIITSNLSPSEL 154 (178)
T ss_dssp TSS---HHHHHCTHHHHHHHHH-----------T-EEEEEESS-HHHH
T ss_pred ceeeecccccccchhhhhHhhc-----------ccCeEeeCCCchhhH
Confidence 854 44566778888886531 124788999986544
No 235
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.08 E-value=2.3e-09 Score=106.37 Aligned_cols=151 Identities=30% Similarity=0.372 Sum_probs=117.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCC----CCCCcccchhhHHHHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSP----PGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
++++-||+.+|||+++..+|+.. +.+++.+|--+..+- ++.+|.. .|...+.+ +.+.++++.+- +++
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTdl---qeYiGTyvTdd~G~lsFkE-GvLVeAlR~Gy--WIV 960 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTDL---QEYIGTYVTDDDGSLSFKE-GVLVEALRRGY--WIV 960 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh---CccEEEecCcccchH---HHHhhceeecCCCceeeeh-hHHHHHHhcCc--EEE
Confidence 69999999999999999999998 788999988765543 4455543 33333444 57888888876 999
Q ss_pred EcCcccccHHHHHHHHHhhcC-ceeecCCCce--eeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhH
Q 047225 95 FDEIEKAHRDVLNVMLQLLDD-GRVTDGKGQT--VDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEF 171 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~-~~~~~~~g~~--i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (287)
+||++.++.+++++|.+++++ +.+.+++... ++.+++++++|-||+.... -++.++.+|
T Consensus 961 LDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~Yg------------------GRK~LSrAF 1022 (4600)
T COG5271 961 LDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYG------------------GRKGLSRAF 1022 (4600)
T ss_pred eeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcccc------------------chHHHHHHH
Confidence 999999999999999999986 5677776433 3346888888888764321 134677899
Q ss_pred HhccCceEEeCCCCHHHHHHHHHHHH
Q 047225 172 LNRIDEVIVFRQLNKMQLMEIVDIML 197 (287)
Q Consensus 172 ~~r~~~~i~~~~~~~~~~~~il~~~l 197 (287)
..|| -.+.|.....+++..|++..+
T Consensus 1023 RNRF-lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1023 RNRF-LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred Hhhh-HhhhcccCcHHHHHHHHhccC
Confidence 9999 889999999999999996544
No 236
>PF10431 ClpB_D2-small: C-terminal, D2-small domain, of ClpB protein ; InterPro: IPR019489 Most Clp ATPases form complexes with peptidase subunits and are involved in protein degradation, though some, such as ClpB, do not associate with peptidases and are involved in protein disaggregation []. This entry represents the C-terminal domain of Clp ATPases, often referred to as the D2-small domain, which forms a mixed alpha-beta structure. Compared with the adjacent AAA D1-small domain (IPR003959 from INTERPRO) it lacks the long coiled-coil insertion, and instead of helix C4 contains a beta-strand (e3) that is part of a three stranded beta-pleated sheet. In Thermophilus the whole protein forms a hexamer with the D1-small and D2-small domains located on the outside of the hexamer, with the long coiled-coil being exposed on the surface. The D2-small domain is essential for oligomerisation, forming a tight interface with the D2-large domain of a neighbouring subunit, thereby providing enough binding energy to stabilise the functional assembly [].; PDB: 3HWS_A 3HTE_F 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 3PXI_A 1R6B_X ....
Probab=99.06 E-value=1.8e-09 Score=75.01 Aligned_cols=81 Identities=46% Similarity=0.745 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEE
Q 047225 184 LNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVT 263 (287)
Q Consensus 184 ~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 263 (287)
++.+++.+|+...+.+...++...+..+.++++++++|+..++.+.+|+|++++++++.+.+.+++.++.+++.++++++
T Consensus 1 L~~~~l~~I~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~~i~~~la~~il~~~~~~g~~v~ 80 (81)
T PF10431_consen 1 LSEEDLEKIADLQLKKLNERLKEKGIELEFDDAVVDYLAEKGYDPEYGARPLRRIIEREIEPPLADAILSGKIKEGDTVR 80 (81)
T ss_dssp --HHHHHHHHHSHHHHHHHHHHHTTEEEEE-HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHHHHHHHSCSCTTCEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCeEEecHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcCEee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred E
Q 047225 264 M 264 (287)
Q Consensus 264 i 264 (287)
|
T Consensus 81 v 81 (81)
T PF10431_consen 81 V 81 (81)
T ss_dssp E
T ss_pred C
Confidence 5
No 237
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.05 E-value=2.9e-09 Score=100.42 Aligned_cols=115 Identities=13% Similarity=0.206 Sum_probs=74.7
Q ss_pred hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCC------cee---ec-cceEEEEeecCCchhhhhhccCCchHHH
Q 047225 87 HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKG------QTV---DL-KNTIIIMTSNIGDSVIARESILGSDQME 156 (287)
Q Consensus 87 ~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g------~~i---~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~ 156 (287)
....++|||||++.+++..|..|+++++++.+....+ ..+ .. -++.+|+++|+...
T Consensus 224 kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll-------------- 289 (637)
T PRK13765 224 KAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL-------------- 289 (637)
T ss_pred ECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH--------------
Confidence 4455899999999999999999999999988765322 111 11 26789999997421
Q ss_pred HHHHHHHHhcCChhHHhccC---ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh
Q 047225 157 RGVAEELRRRFRPEFLNRID---EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE 224 (287)
Q Consensus 157 ~~~~~~~~~~~~~~l~~r~~---~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~ 224 (287)
..+.|+|.+||. ..+.|..-.. +..+....++....+.....+....++.+++..+..+
T Consensus 290 --------~~~dpdL~~rfk~~~v~v~f~~~~~-d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~ 351 (637)
T PRK13765 290 --------ENMHPALRSRIKGYGYEVYMRDTME-DTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIRE 351 (637)
T ss_pred --------HhhhHHHHHHhccCeEEEEcccccC-CCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH
Confidence 123678888885 3455543332 3334444444444444443322457899999988865
No 238
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=2.4e-09 Score=94.79 Aligned_cols=191 Identities=21% Similarity=0.241 Sum_probs=117.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCC--CceEEecccccccccchh-hhhCCC-CCCCcccc----hhhHHHHHHh-C
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSK--EAMVRIDMSEYMEKHTVS-KFFGSP-PGYVGFEN----GGQLTEAVRH-R 88 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~----~~~~~~~~~~-~ 88 (287)
+.+++.|-||||||.+..-+...+.... ...++++|........+. .+++.. ....+... ...+...... .
T Consensus 176 gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k 255 (529)
T KOG2227|consen 176 GSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSK 255 (529)
T ss_pred cceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhccc
Confidence 3799999999999998887777663333 345889998766553322 122111 00011111 1122222222 2
Q ss_pred CcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCC
Q 047225 89 PHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFR 168 (287)
Q Consensus 89 ~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
..-++++||+|.+...-+..|..+++...++. +.+++|..+|.-. +..+|-
T Consensus 256 ~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~--------sr~iLiGiANslD---------------------lTdR~L 306 (529)
T KOG2227|consen 256 FMLLLVLDEMDHLITRSQTVLYTLFEWPKLPN--------SRIILIGIANSLD---------------------LTDRFL 306 (529)
T ss_pred ceEEEEechhhHHhhcccceeeeehhcccCCc--------ceeeeeeehhhhh---------------------HHHHHh
Confidence 34699999999999888888999998765444 3556777777532 122344
Q ss_pred hhHHhcc---CceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 169 PEFLNRI---DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 169 ~~l~~r~---~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
+.|..+. +..+.|+|++.+++.+|++..+.... ...+-..+++.++.......+++|.+-..+.++++.
T Consensus 307 prL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--------t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI 378 (529)
T KOG2227|consen 307 PRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--------TSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEI 378 (529)
T ss_pred hhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--------ccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 5555543 36699999999999999977765432 344555788888877555544444444444444443
No 239
>PF05729 NACHT: NACHT domain
Probab=99.04 E-value=4.2e-09 Score=83.10 Aligned_cols=144 Identities=13% Similarity=0.198 Sum_probs=85.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCC------CceEEeccccccccc---chhhhhCCCCCCCcccchhhHHHHHHhCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSK------EAMVRIDMSEYMEKH---TVSKFFGSPPGYVGFENGGQLTEAVRHRP 89 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~------~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (287)
.++++|+||+|||++++.++..+.... ...+.+.+....... .+...+..............+...+...+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 589999999999999999998874332 123355555554432 22333321111111111112334555566
Q ss_pred cEEEEEcCcccccHHH--------HHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHH
Q 047225 90 HSVILFDEIEKAHRDV--------LNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAE 161 (287)
Q Consensus 90 ~~il~iDeid~~~~~~--------~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~ 161 (287)
..+++||.+|.+.... .+.|..++... .++++.+++|+.+....
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~liit~r~~~~~------------------ 133 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQA----------LPPGVKLIITSRPRAFP------------------ 133 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhc----------cCCCCeEEEEEcCChHH------------------
Confidence 7899999999886632 23455566531 12356788888764321
Q ss_pred HHHhcCChhHHhccC--ceEEeCCCCHHHHHHHHHHHHH
Q 047225 162 ELRRRFRPEFLNRID--EVIVFRQLNKMQLMEIVDIMLK 198 (287)
Q Consensus 162 ~~~~~~~~~l~~r~~--~~i~~~~~~~~~~~~il~~~l~ 198 (287)
.+...+. ..+.+.|++.+++.++++.++.
T Consensus 134 --------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~f~ 164 (166)
T PF05729_consen 134 --------DLRRRLKQAQILELEPFSEEDIKQYLRKYFS 164 (166)
T ss_pred --------HHHHhcCCCcEEEECCCCHHHHHHHHHHHhh
Confidence 1222221 5699999999999999977764
No 240
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=1.3e-09 Score=95.38 Aligned_cols=142 Identities=16% Similarity=0.254 Sum_probs=88.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCC-----CceEEe-cccccccc--cchhhhhCC----CCC----CCcccchhhH
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSK-----EAMVRI-DMSEYMEK--HTVSKFFGS----PPG----YVGFENGGQL 81 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~-----~~~~~~-~~~~~~~~--~~~~~~~~~----~~~----~~~~~~~~~~ 81 (287)
+.++|+||+|+|||++|+.+|+.+.-.. .++-.+ +|..+... ..+..+... ..+ ..+.+..+.+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l 101 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREI 101 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHH
Confidence 3599999999999999999999983111 111110 00000000 000000000 001 1233334455
Q ss_pred HHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHH
Q 047225 82 TEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMER 157 (287)
Q Consensus 82 ~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~ 157 (287)
.+.+.. +++.|+++|+++.+++..++.|++.+++.. .+..+|++|+...
T Consensus 102 ~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-----------~~~~~Ilvth~~~---------------- 154 (325)
T PRK08699 102 IDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPP-----------PQVVFLLVSHAAD---------------- 154 (325)
T ss_pred HHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCc-----------CCCEEEEEeCChH----------------
Confidence 555554 446799999999999999999999999742 1334666554432
Q ss_pred HHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHH
Q 047225 158 GVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDI 195 (287)
Q Consensus 158 ~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~ 195 (287)
.+.+.+.+|| ..+.|+|++.++..+.+..
T Consensus 155 --------~ll~ti~SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 155 --------KVLPTIKSRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred --------hChHHHHHHh-hhhcCCCCCHHHHHHHHHh
Confidence 2357788999 9999999999999888854
No 241
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1e-08 Score=95.65 Aligned_cols=170 Identities=17% Similarity=0.259 Sum_probs=115.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
..++|.|+||||||++++.+|..+ +.+++.++|.+..+...-... +....++...+.+...|+|+-+
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~l---g~h~~evdc~el~~~s~~~~e----------tkl~~~f~~a~~~~pavifl~~ 498 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASEL---GLHLLEVDCYELVAESASHTE----------TKLQAIFSRARRCSPAVLFLRN 498 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHh---CCceEeccHHHHhhcccchhH----------HHHHHHHHHHhhcCceEEEEec
Confidence 469999999999999999999999 899999999887755311100 0012345566666778999998
Q ss_pred cccc--------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 98 IEKA--------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 98 id~~--------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
+|-+ +..++..+..++....+. .+.+..+||++++.- +.+++
T Consensus 499 ~dvl~id~dgged~rl~~~i~~~ls~e~~~------~~~~~~ivv~t~~s~------------------------~~lp~ 548 (953)
T KOG0736|consen 499 LDVLGIDQDGGEDARLLKVIRHLLSNEDFK------FSCPPVIVVATTSSI------------------------EDLPA 548 (953)
T ss_pred cceeeecCCCchhHHHHHHHHHHHhccccc------CCCCceEEEEecccc------------------------ccCCH
Confidence 8843 445666677766632211 223466788888753 25788
Q ss_pred hHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
.+.+.|.+.|.++.++.++..+|++-++... .++.++...-+.. ...+++.+++...+...
T Consensus 549 ~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~-----------~~n~~v~~k~~a~-~t~gfs~~~L~~l~~~~ 609 (953)
T KOG0736|consen 549 DIQSLFLHEIEVPALSEEQRLEILQWYLNHL-----------PLNQDVNLKQLAR-KTSGFSFGDLEALVAHS 609 (953)
T ss_pred HHHHhhhhhccCCCCCHHHHHHHHHHHHhcc-----------ccchHHHHHHHHH-hcCCCCHHHHHHHhcCc
Confidence 9999999999999999999999998777542 2443433332221 23445556666666555
No 242
>PRK06526 transposase; Provisional
Probab=99.02 E-value=3.3e-10 Score=95.72 Aligned_cols=104 Identities=19% Similarity=0.273 Sum_probs=66.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||+++.+++..+...+..+..+++.+.......... . + . .......+. ...+|+|||+
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~----~---~-~-~~~~l~~l~--~~dlLIIDD~ 168 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH----A---G-R-LQAELVKLG--RYPLLIVDEV 168 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh----c---C-c-HHHHHHHhc--cCCEEEEccc
Confidence 69999999999999999999988655566655555544332111100 0 0 0 012222222 3469999999
Q ss_pred cccc--HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 99 EKAH--RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 99 d~~~--~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
+..+ +.....|+++++.+.. +..+|+|||.+...+
T Consensus 169 g~~~~~~~~~~~L~~li~~r~~-----------~~s~IitSn~~~~~w 205 (254)
T PRK06526 169 GYIPFEPEAANLFFQLVSSRYE-----------RASLIVTSNKPFGRW 205 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHHh-----------cCCEEEEcCCCHHHH
Confidence 9764 6677788888875321 124888999886554
No 243
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.00 E-value=8.8e-10 Score=92.36 Aligned_cols=106 Identities=22% Similarity=0.302 Sum_probs=68.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+|+||||||+++.+++..+...+..+.+++..+..... ...+.. .. .....+.+.+... .+|+|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l--~~~~~~----~~-~~~~~~l~~l~~~--dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAM--KDTFSN----SE-TSEEQLLNDLSNV--DLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHH--HHHHhh----cc-ccHHHHHHHhccC--CEEEEeCC
Confidence 699999999999999999999996666777777765544321 111110 00 0112455555544 49999999
Q ss_pred ccccH--HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchh
Q 047225 99 EKAHR--DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSV 143 (287)
Q Consensus 99 d~~~~--~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~ 143 (287)
+.... -....|..+++.+... +..+|+|||.....
T Consensus 172 g~~~~s~~~~~~l~~Ii~~Ry~~----------~~~tiitSNl~~~~ 208 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRRSSS----------KRPTGMLTNSNMEE 208 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhC----------CCCEEEeCCCCHHH
Confidence 86532 3445778888864211 23589999987544
No 244
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.99 E-value=2.8e-10 Score=101.34 Aligned_cols=249 Identities=14% Similarity=0.173 Sum_probs=142.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchh-hhhCCCCCCCcccchhhHHHHHHhCCcEEEEEc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVS-KFFGSPPGYVGFENGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 96 (287)
-|++|.|.|||.||.+.+-+-+.. |+...+-+.-+....+. ....++.+..-+.+.+ ++...+.+|++||
T Consensus 365 INVLLLGDPgtAKSQlLKFvEkvs-----PIaVYTSGKGSSAAGLTASV~RD~~tReFylEGG----AMVLADgGVvCID 435 (729)
T KOG0481|consen 365 INVLLLGDPGTAKSQLLKFVEKVS-----PIAVYTSGKGSSAAGLTASVIRDPSTREFYLEGG----AMVLADGGVVCID 435 (729)
T ss_pred eeEEEecCCchhHHHHHHHHHhcC-----ceEEEecCCCcccccceeeEEecCCcceEEEecc----eEEEecCCEEEee
Confidence 479999999999999999885543 22222222111110000 1111111111111111 2233456799999
Q ss_pred CcccccHHHHHHHHHhhcCceeecCC-Cceeec-cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhc
Q 047225 97 EIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNR 174 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 174 (287)
|+|+|..+-.-++.+.|+...+.+.+ |...-+ +.+.|.+++|+..... .+....-++- -|.+.+++|
T Consensus 436 EFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRy--------Dd~Kt~~dNI---Df~~TILSR 504 (729)
T KOG0481|consen 436 EFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRY--------DDTKTGEDNI---DFMPTILSR 504 (729)
T ss_pred hhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccc--------cccCCccccc---chhhhHhhh
Confidence 99999999999999999998888776 655555 4778889999864432 2222111110 366889999
Q ss_pred cCceEEeCCCCHHHH-HHHHHHHHHHHHHHHH--hcC---cEEEeChhHHHHHHHh---ccCCCCCchhHHHHHHHHHHH
Q 047225 175 IDEVIVFRQLNKMQL-MEIVDIMLKEIYERLE--AKN---MELTVTHTFKKKLIEE---GYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 175 ~~~~i~~~~~~~~~~-~~il~~~l~~~~~~~~--~~~---~~~~i~~~~~~~l~~~---~~~~~~~~r~l~~~i~~~~~~ 245 (287)
||.++-+..--.++. ..|.++.++-...... ... ..-.++.+-+.....+ ...|.++....++.-.+.+..
T Consensus 505 FDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~ 584 (729)
T KOG0481|consen 505 FDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTM 584 (729)
T ss_pred ccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHH
Confidence 998876665543333 3344444432111000 000 1123455555544443 344666666666666655543
Q ss_pred HHHHHHHhccCCCCCEEEEEEcCCccEEEEEecCCcccccc
Q 047225 246 NLAEIILTGYIQVGDSVTMDCDSGGNVIMYRHRNGSMTVCA 286 (287)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 286 (287)
...-....++.....++.|+++..+-+.+..+.-++|++++
T Consensus 585 R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~ 625 (729)
T KOG0481|consen 585 RKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSP 625 (729)
T ss_pred HHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCc
Confidence 33222334445556788999988888777777777777664
No 245
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.99 E-value=1.7e-09 Score=82.20 Aligned_cols=109 Identities=19% Similarity=0.327 Sum_probs=72.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC-----CCceEEeccccccccc----chhhhhCCCCCC--CcccchhhHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS-----KEAMVRIDMSEYMEKH----TVSKFFGSPPGY--VGFENGGQLTEAVRH 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~-----~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 87 (287)
.++++||+|+|||++++.++..+... ..+++.+++....... .+...++..... ........+.+.+..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 69999999999999999999987421 4566777776555322 223333333222 111112345667777
Q ss_pred CCcEEEEEcCcccc-cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCC
Q 047225 88 RPHSVILFDEIEKA-HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIG 140 (287)
Q Consensus 88 ~~~~il~iDeid~~-~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~ 140 (287)
....+|+|||+|.+ +....+.|..+++. .++.+|+++.+.
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~~-------------~~~~vvl~G~~~ 126 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLNE-------------SNIKVVLVGTPE 126 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTCS-------------CBEEEEEEESST
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHhC-------------CCCeEEEEEChh
Confidence 77679999999999 98899999888883 245677777663
No 246
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.98 E-value=8.4e-09 Score=95.40 Aligned_cols=195 Identities=19% Similarity=0.188 Sum_probs=126.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc-------CCCCceEEecccccccccchhh-hhCCCCC-CCcccchh-hHHH-HH--
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF-------GSKEAMVRIDMSEYMEKHTVSK-FFGSPPG-YVGFENGG-QLTE-AV-- 85 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~-------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~-~~~~-~~-- 85 (287)
.+++.|-||||||.++..+-..+. -+...++.+|.........+.. ++..-.+ ..++..+- .+.. +.
T Consensus 424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~ 503 (767)
T KOG1514|consen 424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP 503 (767)
T ss_pred eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence 699999999999999999888774 2346667777766655433221 1111111 11111111 1111 11
Q ss_pred -HhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 86 -RHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 86 -~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
......||+|||+|.+-..-|+.|..++++..... +..+||+.+|.-.- .+
T Consensus 504 k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~--------sKLvvi~IaNTmdl--------------------PE 555 (767)
T KOG1514|consen 504 KPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKN--------SKLVVIAIANTMDL--------------------PE 555 (767)
T ss_pred CCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCC--------CceEEEEecccccC--------------------HH
Confidence 11334799999999999899999999999854443 35566666664211 12
Q ss_pred hcCChhHHhccCce-EEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 165 RRFRPEFLNRIDEV-IVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 165 ~~~~~~l~~r~~~~-i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
+.|....-+|++.. +.|.|++..++.+|+...|... -.+..++++.++..-..-.+++|....++.++.
T Consensus 556 r~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~----------~~f~~~aielvarkVAavSGDaRraldic~RA~ 625 (767)
T KOG1514|consen 556 RLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL----------DAFENKAIELVARKVAAVSGDARRALDICRRAA 625 (767)
T ss_pred HHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch----------hhcchhHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 23444566888755 9999999999999997776542 246788888888765555666777777777777
Q ss_pred HHHHHHHH
Q 047225 244 EDNLAEII 251 (287)
Q Consensus 244 ~~~~~~~~ 251 (287)
..+-.+..
T Consensus 626 Eia~~~~~ 633 (767)
T KOG1514|consen 626 EIAEERNV 633 (767)
T ss_pred HHhhhhcc
Confidence 76665444
No 247
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.95 E-value=4.4e-08 Score=90.60 Aligned_cols=75 Identities=20% Similarity=0.191 Sum_probs=51.1
Q ss_pred hcCChhHHhccC-ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 165 RRFRPEFLNRID-EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 165 ~~~~~~l~~r~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
..|+++++.... ..|.|.|....-+++.+...+.......... ....-..++++.|+..+. +|+|.+|..+-
T Consensus 193 ~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~-~~~p~~~~~l~~I~~~s~------GDIRsAIn~LQ 265 (519)
T PF03215_consen 193 RLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGK-NKVPDKQSVLDSIAESSN------GDIRSAINNLQ 265 (519)
T ss_pred hccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCC-ccCCChHHHHHHHHHhcC------chHHHHHHHHH
Confidence 367888887654 5599999999999999998887654433211 112223456888887653 68999988554
Q ss_pred HHH
Q 047225 244 EDN 246 (287)
Q Consensus 244 ~~~ 246 (287)
.-+
T Consensus 266 f~~ 268 (519)
T PF03215_consen 266 FWC 268 (519)
T ss_pred HHh
Confidence 433
No 248
>PRK06921 hypothetical protein; Provisional
Probab=98.93 E-value=4.1e-09 Score=89.82 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=65.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC-CCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS-KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 96 (287)
.+++|+||+|+|||+|+.++++.+... +...++++..+..... ...+ .........+... .+|+||
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l--~~~~---------~~~~~~~~~~~~~--dlLiID 184 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL--KDDF---------DLLEAKLNRMKKV--EVLFID 184 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH--HHHH---------HHHHHHHHHhcCC--CEEEEe
Confidence 369999999999999999999998655 5666777664433211 1101 0001223334344 499999
Q ss_pred Cccc-------ccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 97 EIEK-------AHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 97 eid~-------~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
|++. .+.-.+..|+.+++.+... +..+|+|||..+..+
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~~~----------~k~tIitsn~~~~el 229 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRYLN----------HKPILISSELTIDEL 229 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHHHC----------CCCEEEECCCCHHHH
Confidence 9943 3444566788888764221 124788999876544
No 249
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.93 E-value=1.1e-10 Score=105.88 Aligned_cols=241 Identities=14% Similarity=0.145 Sum_probs=129.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccch-hhhhCCCCCCCcccchhhH--HHHHHhCCcEEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTV-SKFFGSPPGYVGFENGGQL--TEAVRHRPHSVIL 94 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~il~ 94 (287)
.|++|+|.||||||...+.+++.... .++ ..+.-...-.+ ......+.+. .|. ..++-....+|++
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~R---AV~--tTGqGASavGLTa~v~KdPvtr------EWTLEaGALVLADkGvCl 551 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPR---AVF--TTGQGASAVGLTAYVRKDPVTR------EWTLEAGALVLADKGVCL 551 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcc---eeE--eccCCccccceeEEEeeCCccc------eeeeccCeEEEccCceEE
Confidence 47999999999999999999887521 111 11110000000 0000011000 111 1234445668999
Q ss_pred EcCcccccHHHHHHHHHhhcCceeecCC-Cceeec-cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHH
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFL 172 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (287)
|||+|+|...-...+.+.|++..+.+++ |....+ ..|.+|+++||-...... ...+.+-+ .+..+++
T Consensus 552 IDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~-----s~tFaqNV------~ltePIl 620 (854)
T KOG0477|consen 552 IDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNP-----SLTFAQNV------DLTEPIL 620 (854)
T ss_pred eehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCC-----ccchhhcc------ccccchh
Confidence 9999999999889999999999888876 654444 478999999994433211 11111211 4567899
Q ss_pred hccCceEEe-CCCCHHHHHHHHHHHHHHHHHHHHhcC--cEE----------EeChhHHHHHHHhccCCCCCchhHHHHH
Q 047225 173 NRIDEVIVF-RQLNKMQLMEIVDIMLKEIYERLEAKN--MEL----------TVTHTFKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 173 ~r~~~~i~~-~~~~~~~~~~il~~~l~~~~~~~~~~~--~~~----------~i~~~~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
+|||....+ ...+..+-.++.+..+......-.... -.+ .++.+++.....++-. -++-.+
T Consensus 621 SRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~------~v~PkL 694 (854)
T KOG0477|consen 621 SRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYARE------KVRPKL 694 (854)
T ss_pred hhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHH------hccccc
Confidence 999876444 344443333344333332211111110 001 1333333332222110 011111
Q ss_pred HHHHHHHHHHH--HHhccCCCCCEEEEEEcCCccEEEEEecCCcccccc
Q 047225 240 GRLLEDNLAEI--ILTGYIQVGDSVTMDCDSGGNVIMYRHRNGSMTVCA 286 (287)
Q Consensus 240 ~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 286 (287)
...=+...+.. .+..+....+++.|+++.-++++..+++-++|+++.
T Consensus 695 ~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~ 743 (854)
T KOG0477|consen 695 NQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLRE 743 (854)
T ss_pred ccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 11111112222 234666668889999998888888888878877764
No 250
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.90 E-value=1.2e-07 Score=83.34 Aligned_cols=133 Identities=15% Similarity=0.222 Sum_probs=78.1
Q ss_pred cEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH----h
Q 047225 90 HSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR----R 165 (287)
Q Consensus 90 ~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 165 (287)
+-|++|||+|+++++....++..+.. ..+.+++.+|++.++. .+...+..... .
T Consensus 173 ~iViiIDdLDR~~~~~i~~~l~~ik~---------~~~~~~i~~Il~~D~~-------------~l~~ai~~~~~~~~~~ 230 (325)
T PF07693_consen 173 RIVIIIDDLDRCSPEEIVELLEAIKL---------LLDFPNIIFILAFDPE-------------ILEKAIEKNYGEGFDE 230 (325)
T ss_pred eEEEEEcchhcCCcHHHHHHHHHHHH---------hcCCCCeEEEEEecHH-------------HHHHHHHhhcCccccc
Confidence 46999999999999866666665553 1123678899988752 11222222111 1
Q ss_pred cCChhHHhcc-CceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEe----------ChhHHHHHHHhccCCCCCchh
Q 047225 166 RFRPEFLNRI-DEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTV----------THTFKKKLIEEGYNPSYGARP 234 (287)
Q Consensus 166 ~~~~~l~~r~-~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i----------~~~~~~~l~~~~~~~~~~~r~ 234 (287)
....++++++ +..+.+|+++..++...+...+...............+ ....+..+....-....++|.
T Consensus 231 ~~~~~yLeKiiq~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ 310 (325)
T PF07693_consen 231 IDGREYLEKIIQVPFSLPPPSPSDLERYLNELLESLESETNESDDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRD 310 (325)
T ss_pred ccHHHHHHhhcCeEEEeCCCCHHHHHHHHHHHHHHhhhccccccchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHH
Confidence 2335677776 34499999999999888877766554433221110011 123333333322234568899
Q ss_pred HHHHHHHHHH
Q 047225 235 LRRAIGRLLE 244 (287)
Q Consensus 235 l~~~i~~~~~ 244 (287)
+++.++....
T Consensus 311 ikr~iN~~~~ 320 (325)
T PF07693_consen 311 IKRFINSLSL 320 (325)
T ss_pred HHHHHHHHHH
Confidence 9999986543
No 251
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.88 E-value=3.5e-09 Score=89.54 Aligned_cols=105 Identities=23% Similarity=0.392 Sum_probs=70.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||+|+.++++.+...+..+..++..+..... ...+.. + .....+...+...+ +|+|||+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L--k~~~~~-----~-~~~~~l~~~l~~~d--lLIiDDl 176 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL--KAAFDE-----G-RLEEKLLRELKKVD--LLIIDDI 176 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--HHHHhc-----C-chHHHHHHHhhcCC--EEEEecc
Confidence 699999999999999999999997556788888887765432 111110 0 01134555565555 9999999
Q ss_pred cccc--HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 99 EKAH--RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 99 d~~~--~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
-..+ ....+.+++++..+.... .. |+|+|.+...+
T Consensus 177 G~~~~~~~~~~~~~q~I~~r~~~~----------~~-~~tsN~~~~~~ 213 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRRYESR----------SL-IITSNLSFGEW 213 (254)
T ss_pred cCccCCHHHHHHHHHHHHHHHhhc----------cc-eeecCCChHHH
Confidence 9754 445566777776543222 13 99999875443
No 252
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.84 E-value=2.5e-08 Score=83.13 Aligned_cols=185 Identities=23% Similarity=0.341 Sum_probs=92.0
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccc-------------hhhhhCCC
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT-------------VSKFFGSP 69 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~ 69 (287)
+++++..+... +..+++++||.|+|||++++.+...+...+...++++......... +...++..
T Consensus 8 l~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (234)
T PF01637_consen 8 LEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGIS 85 (234)
T ss_dssp HHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHH
T ss_pred HHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444444432 1236999999999999999999998844333333333322111110 00111110
Q ss_pred -CC-----------CCcccchhhHHHHHHhCC-cEEEEEcCccccc------HHHHHHHHHhhcCceeecCCCceeeccc
Q 047225 70 -PG-----------YVGFENGGQLTEAVRHRP-HSVILFDEIEKAH------RDVLNVMLQLLDDGRVTDGKGQTVDLKN 130 (287)
Q Consensus 70 -~~-----------~~~~~~~~~~~~~~~~~~-~~il~iDeid~~~------~~~~~~L~~~l~~~~~~~~~g~~i~~~~ 130 (287)
+. .........+.+.+.... ..+|+|||++.+. ......|..+++.... ..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 156 (234)
T PF01637_consen 86 IPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS---------QQN 156 (234)
T ss_dssp CCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-------------TT
T ss_pred cccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc---------cCC
Confidence 00 011122234455555432 3799999999988 5667777777765111 123
Q ss_pred eEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcE
Q 047225 131 TIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNME 210 (287)
Q Consensus 131 ~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~ 210 (287)
..+|+++....- ... +... ..++..|+.. +.++|++.++..+++.....+. ..
T Consensus 157 ~~~v~~~S~~~~----------------~~~-~~~~-~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~--------~~ 209 (234)
T PF01637_consen 157 VSIVITGSSDSL----------------MEE-FLDD-KSPLFGRFSH-IELKPLSKEEAREFLKELFKEL--------IK 209 (234)
T ss_dssp EEEEEEESSHHH----------------HHH-TT-T-TSTTTT---E-EEE----HHHHHHHHHHHHHCC----------
T ss_pred ceEEEECCchHH----------------HHH-hhcc-cCccccccce-EEEeeCCHHHHHHHHHHHHHHh--------hc
Confidence 334444432110 000 0011 2457788855 9999999999999997765432 01
Q ss_pred EEeChhHHHHHHHhc
Q 047225 211 LTVTHTFKKKLIEEG 225 (287)
Q Consensus 211 ~~i~~~~~~~l~~~~ 225 (287)
+..+++.++.+....
T Consensus 210 ~~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 210 LPFSDEDIEEIYSLT 224 (234)
T ss_dssp ----HHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHh
Confidence 245888888887764
No 253
>PRK09183 transposase/IS protein; Provisional
Probab=98.84 E-value=1.5e-08 Score=86.07 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=64.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||+++.+++......+..+.++++.+..........- +. ...+.... .....+++|||+
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~----~~-----~~~~~~~~-~~~~dlLiiDdl 173 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQ----GR-----YKTTLQRG-VMAPRLLIIDEI 173 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHC----Cc-----HHHHHHHH-hcCCCEEEEccc
Confidence 699999999999999999988765555666666655443221100000 00 01122111 123359999999
Q ss_pred ccc--cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 99 EKA--HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 99 d~~--~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
... +....+.|+++++.+... ..+|+|||.+...+
T Consensus 174 g~~~~~~~~~~~lf~li~~r~~~-----------~s~iiTsn~~~~~w 210 (259)
T PRK09183 174 GYLPFSQEEANLFFQVIAKRYEK-----------GSMILTSNLPFGQW 210 (259)
T ss_pred ccCCCChHHHHHHHHHHHHHHhc-----------CcEEEecCCCHHHH
Confidence 964 445666788888753211 13788999986654
No 254
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=7.1e-08 Score=82.41 Aligned_cols=129 Identities=18% Similarity=0.242 Sum_probs=81.8
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc--cchhhhhCCCCC-CCcccchhhHHHHHHh----CCc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK--HTVSKFFGSPPG-YVGFENGGQLTEAVRH----RPH 90 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~ 90 (287)
+.++|+||.|+||+++|..+|..+.-...+ -.|..+... ..+..+.....+ ..+.++.+.+.+.+.. +++
T Consensus 20 HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~---~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 20 SAIILHGQDLSNLSARAYELASLILKETSP---EAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred eeEeeECCCCCcHHHHHHHHHHHHhCCCCc---cHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 459999999999999999999988432111 011100000 000001111111 1233333445454443 445
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
.|++||++|++..+.+++|++.+|+. +++++||+.|+... .+.|.
T Consensus 97 kv~ii~~ad~mt~~AaNaLLK~LEEP-----------p~~~~fiL~~~~~~------------------------~ll~T 141 (290)
T PRK05917 97 KIYIIHEADRMTLDAISAFLKVLEDP-----------PQHGVIILTSAKPQ------------------------RLPPT 141 (290)
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcC-----------CCCeEEEEEeCChh------------------------hCcHH
Confidence 79999999999999999999999983 23556776665432 45688
Q ss_pred HHhccCceEEeCCCC
Q 047225 171 FLNRIDEVIVFRQLN 185 (287)
Q Consensus 171 l~~r~~~~i~~~~~~ 185 (287)
+.||| ..+.|+|+.
T Consensus 142 I~SRc-q~~~~~~~~ 155 (290)
T PRK05917 142 IRSRS-LSIHIPMEE 155 (290)
T ss_pred HHhcc-eEEEccchh
Confidence 99999 999999875
No 255
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.2e-08 Score=91.60 Aligned_cols=179 Identities=22% Similarity=0.324 Sum_probs=103.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc------cchhhhhCCCCCCCcccchhhHHHHHHhCCcEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK------HTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSV 92 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 92 (287)
.++|+||||||||.+||.+...+.....+++ |..+..+. ..+..+|.+.. ..-...=......|
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePKIV--NGPeIL~KYVGeSE~NvR~LFaDAE--------eE~r~~g~~SgLHI 327 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPKIV--NGPEILNKYVGESEENVRKLFADAE--------EEQRRLGANSGLHI 327 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCccc--CcHHHHHHhhcccHHHHHHHHHhHH--------HHHHhhCccCCceE
Confidence 4999999999999999999999965444433 32222211 12222221100 00000000122359
Q ss_pred EEEcCccc-------------ccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHH
Q 047225 93 ILFDEIEK-------------AHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGV 159 (287)
Q Consensus 93 l~iDeid~-------------~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~ 159 (287)
++|||+|- ....+.+.|+.-|+. .. .+.|+.+|.-||...-
T Consensus 328 IIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG-Ve--------qLNNILVIGMTNR~Dl----------------- 381 (744)
T KOG0741|consen 328 IIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG-VE--------QLNNILVIGMTNRKDL----------------- 381 (744)
T ss_pred EEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc-HH--------hhhcEEEEeccCchhh-----------------
Confidence 99999994 344577788877763 11 1357788888887421
Q ss_pred HHHHHhcCChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHH
Q 047225 160 AEELRRRFRPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRR 237 (287)
Q Consensus 160 ~~~~~~~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~ 237 (287)
++++|+ .|+--.+.+.-|++....+|++.+-.++...- .+.-+++ ++.|+.. ..+++.-++.-
T Consensus 382 -------IDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~---~l~~dVd---l~elA~l--TKNfSGAEleg 446 (744)
T KOG0741|consen 382 -------IDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENN---KLSADVD---LKELAAL--TKNFSGAELEG 446 (744)
T ss_pred -------HHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcC---CCCCCcC---HHHHHHH--hcCCchhHHHH
Confidence 233444 78866699999999999999876655443221 1122333 3344443 33455567777
Q ss_pred HHHHHHHHHHH
Q 047225 238 AIGRLLEDNLA 248 (287)
Q Consensus 238 ~i~~~~~~~~~ 248 (287)
.+..+...++-
T Consensus 447 lVksA~S~A~n 457 (744)
T KOG0741|consen 447 LVKSAQSFAMN 457 (744)
T ss_pred HHHHHHHHHHH
Confidence 77665555543
No 256
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.81 E-value=1.1e-08 Score=91.37 Aligned_cols=210 Identities=14% Similarity=0.170 Sum_probs=119.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHH--HHHHhCCcEEEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLT--EAVRHRPHSVILF 95 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~il~i 95 (287)
-|+||.|.||+.||.|.+.+.+..+.. .+.+-..|.-.. .+ .....++.. | +... .++-....+|.+|
T Consensus 376 INicLmGDPGVAKSQLLkyi~rlapRg--vYTTGrGSSGVG-LT-AAVmkDpvT--g----EM~LEGGALVLAD~GICCI 445 (721)
T KOG0482|consen 376 INICLMGDPGVAKSQLLKYISRLAPRG--VYTTGRGSSGVG-LT-AAVMKDPVT--G----EMVLEGGALVLADGGICCI 445 (721)
T ss_pred eeEEecCCCchhHHHHHHHHHhcCccc--ceecCCCCCccc-cc-hhhhcCCCC--C----eeEeccceEEEccCceEee
Confidence 479999999999999999998765321 111111110000 00 000000000 0 0011 1333345689999
Q ss_pred cCcccccHHHHHHHHHhhcCceeecCC-Cceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHh
Q 047225 96 DEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLN 173 (287)
Q Consensus 96 Deid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (287)
||+|+++..-..++.++|+...+++++ |....++ .+.|++++||-....+.. .+..+- =.++++|++
T Consensus 446 DEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnpr-----rs~e~N------I~LPaALLS 514 (721)
T KOG0482|consen 446 DEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPR-----RSPEQN------INLPAALLS 514 (721)
T ss_pred hhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcc-----cChhHh------cCCcHHHHH
Confidence 999999999999999999999888876 7666664 678888999864433211 111111 158899999
Q ss_pred ccCce-EEeCCCCHHHHHHHHHH---------------------HHHHHHHHHHhcCcEEEeChhHHHHHHHh-------
Q 047225 174 RIDEV-IVFRQLNKMQLMEIVDI---------------------MLKEIYERLEAKNMELTVTHTFKKKLIEE------- 224 (287)
Q Consensus 174 r~~~~-i~~~~~~~~~~~~il~~---------------------~l~~~~~~~~~~~~~~~i~~~~~~~l~~~------- 224 (287)
|||.. +....|+.+.-..+.++ .+.++....+. ..+.++++..+++...
T Consensus 515 RFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~--~~P~vp~~l~dyi~~AYv~~Rre 592 (721)
T KOG0482|consen 515 RFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKR--KNPVVPEALADYITGAYVELRRE 592 (721)
T ss_pred hhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHH
Confidence 99755 44455554433333321 22333333332 2467888888888642
Q ss_pred ccCC----CCCchhHHHHHHHHHHHHHHHHHH
Q 047225 225 GYNP----SYGARPLRRAIGRLLEDNLAEIIL 252 (287)
Q Consensus 225 ~~~~----~~~~r~l~~~i~~~~~~~~~~~~~ 252 (287)
+|.+ ..++|.+-.++. +..++++..+
T Consensus 593 a~~~~~~t~ttpRtLL~IlR--ls~AlarLRl 622 (721)
T KOG0482|consen 593 ARSSKDFTYTTPRTLLGILR--LSTALARLRL 622 (721)
T ss_pred hhccCCCcccCHHHHHHHHH--HHHHHHHhhh
Confidence 2322 456666665555 3344444433
No 257
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.76 E-value=4.2e-08 Score=85.19 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=66.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||+|||||+|+.++++.+...+.....+.+.++.... ...++. .......+.+...+ +|+|||+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l--k~~~~~-------~~~~~~l~~l~~~d--lLiIDDi 226 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL--KNSISD-------GSVKEKIDAVKEAP--VLMLDDI 226 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH--HHHHhc-------CcHHHHHHHhcCCC--EEEEecC
Confidence 699999999999999999999997666777777766544321 111111 01124445555555 9999999
Q ss_pred ccc--cHHHHH-HHHHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 99 EKA--HRDVLN-VMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 99 d~~--~~~~~~-~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
... ++-..+ .|..+++.+.. .+...|+|||.....+
T Consensus 227 G~e~~s~~~~~~ll~~Il~~R~~----------~~~~ti~TSNl~~~el 265 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQYRMQ----------EELPTFFTSNFDFDEL 265 (306)
T ss_pred CCccccHHHHHHHHHHHHHHHHH----------CCCeEEEECCCCHHHH
Confidence 854 333333 34445554311 1236999999875543
No 258
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.76 E-value=4.4e-07 Score=74.90 Aligned_cols=197 Identities=20% Similarity=0.141 Sum_probs=123.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhh---hhCCCCCCC----cccchhhHHHHHHhCCc-
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSK---FFGSPPGYV----GFENGGQLTEAVRHRPH- 90 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~- 90 (287)
.+.++|+.|+|||.++|++...+..+....++++.....+...... -+...+... .....+.+......+.+
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 6899999999999999977777754434444555544444322211 122211111 11112345556666666
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
-++++||++.+..+..+.|+.+.+--.-. . ....++..+.|.-... ++..--.+
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~nl~~~~------~--~~l~ivL~Gqp~L~~~------------------lr~~~l~e 186 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTNLEEDS------S--KLLSIVLIGQPKLRPR------------------LRLPVLRE 186 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHhhcccc------c--CceeeeecCCcccchh------------------hchHHHHh
Confidence 79999999999999999998887731100 0 0134555555432211 11111146
Q ss_pred HHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHH
Q 047225 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNLAEI 250 (287)
Q Consensus 171 l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~~~~ 250 (287)
+-.|++..|.++|++.++....++..++.. .....-++++++..+.... +.+.+.++..+..++...
T Consensus 187 ~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a------~~~~~l~~~~a~~~i~~~s-------qg~P~lin~~~~~Al~~a 253 (269)
T COG3267 187 LEQRIDIRIELPPLTEAETGLYLRHRLEGA------GLPEPLFSDDALLLIHEAS-------QGIPRLINNLATLALDAA 253 (269)
T ss_pred hhheEEEEEecCCcChHHHHHHHHHHHhcc------CCCcccCChhHHHHHHHHh-------ccchHHHHHHHHHHHHHH
Confidence 778996669999999999999998888764 1223568899999998764 346677887777777666
Q ss_pred HHhc
Q 047225 251 ILTG 254 (287)
Q Consensus 251 ~~~~ 254 (287)
+.-+
T Consensus 254 ~~a~ 257 (269)
T COG3267 254 YSAG 257 (269)
T ss_pred HHcC
Confidence 5543
No 259
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=98.75 E-value=3.2e-08 Score=89.71 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=100.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCccc---chhhHHHHHHhCCcEEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE---NGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~il~ 94 (287)
.|++++|.|.+.||.|.|.+.+.-+. .+. +.+.-+ + -.|..+..+.-. +-+.-..++-...++|+|
T Consensus 335 INiLlvGDPSvAKSQLLRyVLntApl---AI~--TTGRGS--S----GVGLTAAVTtD~eTGERRLEAGAMVLADRGVVC 403 (818)
T KOG0479|consen 335 INILLVGDPSVAKSQLLRYVLNTAPL---AIA--TTGRGS--S----GVGLTAAVTTDQETGERRLEAGAMVLADRGVVC 403 (818)
T ss_pred eeEEEecCchHHHHHHHHHHHhcccc---ccc--ccCCCC--C----CccceeEEeeccccchhhhhcCceEEccCceEE
Confidence 37999999999999999999876521 110 000000 0 000000000000 001123355556778999
Q ss_pred EcCcccccHHHHHHHHHhhcCceeecCC-Cceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHH
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFL 172 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (287)
|||||+|+.--.-++.++|+++.+++++ |..-.++ .|.|++++||-... |.......++. .++..|+
T Consensus 404 IDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~--------Yd~~k~P~eNI---gLpDSLL 472 (818)
T KOG0479|consen 404 IDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQ--------YDQSKTPMENI---GLPDSLL 472 (818)
T ss_pred ehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccc--------cCCCCChhhcc---CCcHHHH
Confidence 9999999998889999999999999987 7766665 79999999996543 22222222221 5778999
Q ss_pred hccCce-EEeCCCCHHHHHHHHHHHH
Q 047225 173 NRIDEV-IVFRQLNKMQLMEIVDIML 197 (287)
Q Consensus 173 ~r~~~~-i~~~~~~~~~~~~il~~~l 197 (287)
+|||.. |.+...+.+--..|..+.|
T Consensus 473 SRFDLlFv~lD~~d~~~D~~iSeHVL 498 (818)
T KOG0479|consen 473 SRFDLLFVVLDDIDADIDRMISEHVL 498 (818)
T ss_pred hhhcEEEEEeccccchHHHHHHHHHH
Confidence 999866 6666666555455554444
No 260
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.74 E-value=2.5e-07 Score=83.67 Aligned_cols=190 Identities=15% Similarity=0.193 Sum_probs=96.2
Q ss_pred CCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc-cccccc---cchhhhhCCCCCCCc-ccchhhHHHHH-
Q 047225 12 DPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM-SEYMEK---HTVSKFFGSPPGYVG-FENGGQLTEAV- 85 (287)
Q Consensus 12 ~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~- 85 (287)
.|+-+...++|+||+||||||+++.|++.+ +..++.+.- ...... .......+. .+.. ...-..+....
T Consensus 105 ~~~l~~~iLLltGPsGcGKSTtvkvLskel---g~~~~Ew~Npi~~~~~~~~h~~t~~~~~--~~~s~L~~fesFler~~ 179 (634)
T KOG1970|consen 105 TPKLGSRILLLTGPSGCGKSTTVKVLSKEL---GYQLIEWSNPINLKEPENLHNETSFLMF--PYQSQLAVFESFLLRAT 179 (634)
T ss_pred ccCCCceEEEEeCCCCCCchhHHHHHHHhh---CceeeeecCCccccccccccccchhccc--chhhHHHHHHHHHHHHH
Confidence 455555579999999999999999999999 444443321 100000 000000000 0000 00000011111
Q ss_pred -----Hh------CCcEEEEEcCcccccHH-----HHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhcc
Q 047225 86 -----RH------RPHSVILFDEIEKAHRD-----VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESI 149 (287)
Q Consensus 86 -----~~------~~~~il~iDeid~~~~~-----~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~ 149 (287)
.. +...+|++||+...... .++.|..+...|.++. |++.|+.........
T Consensus 180 kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~Pl------------If~iTd~~~~g~nnq-- 245 (634)
T KOG1970|consen 180 KYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPL------------IFIITDSLSNGNNNQ-- 245 (634)
T ss_pred hhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcE------------EEEEeccccCCCcch--
Confidence 00 11248999999855332 3444554455444332 333333322111111
Q ss_pred CCchHHHHHHHHHHHhcCChhHH--hccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccC
Q 047225 150 LGSDQMERGVAEELRRRFRPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYN 227 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 227 (287)
+. .|+.++. -|+ ..|.|.|....-+++.+...+........ +.++.. ...++.++..+-
T Consensus 246 --~r------------lf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s--~~k~~~-~~~v~~i~~~s~- 306 (634)
T KOG1970|consen 246 --DR------------LFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKS--GIKVPD-TAEVELICQGSG- 306 (634)
T ss_pred --hh------------hchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhccccc--CCcCch-hHHHHHHHHhcC-
Confidence 11 2333333 344 66999999999999999888876544432 112222 334444544432
Q ss_pred CCCCchhHHHHHHHHHH
Q 047225 228 PSYGARPLRRAIGRLLE 244 (287)
Q Consensus 228 ~~~~~r~l~~~i~~~~~ 244 (287)
+++|.+|+.+-.
T Consensus 307 -----GDIRsAInsLQl 318 (634)
T KOG1970|consen 307 -----GDIRSAINSLQL 318 (634)
T ss_pred -----ccHHHHHhHhhh
Confidence 689999985443
No 261
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.74 E-value=3.5e-07 Score=77.95 Aligned_cols=200 Identities=16% Similarity=0.188 Sum_probs=111.4
Q ss_pred hhhhhccCCCCCCCc-EEEEEeccCCChHHHHHHHHHHHhcCC------CCceEEeccccccccc----chhhhhCCCCC
Q 047225 3 LERARVGIRDPNRPI-SSFLFTGPTGVGKTELANALAFEYFGS------KEAMVRIDMSEYMEKH----TVSKFFGSPPG 71 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~ill~Gp~GtGKT~la~~la~~l~~~------~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 71 (287)
++++...+..|.+.. ++++|+|++|.|||++++......... ..+++.+.+....+.. .+...+|.+..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 444555556665444 469999999999999999998876321 2356666654433332 22334444422
Q ss_pred CCc--ccchhhHHHHHHhCCcEEEEEcCcccc-------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCch
Q 047225 72 YVG--FENGGQLTEAVRHRPHSVILFDEIEKA-------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDS 142 (287)
Q Consensus 72 ~~~--~~~~~~~~~~~~~~~~~il~iDeid~~-------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~ 142 (287)
... ......+...++..+-.+|+|||++.+ ...+.+.|..+-++-.+ .+|+.+...+.
T Consensus 126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~i-------------piV~vGt~~A~ 192 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQI-------------PIVGVGTREAY 192 (302)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCC-------------CeEEeccHHHH
Confidence 211 111233456777777789999999975 22345555555444222 24444433222
Q ss_pred hhhhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHH-HHHHHHHHHHHHHHHHHHh-cCcEEEeChhHHHH
Q 047225 143 VIARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKM-QLMEIVDIMLKEIYERLEA-KNMELTVTHTFKKK 220 (287)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~-~~~~il~~~l~~~~~~~~~-~~~~~~i~~~~~~~ 220 (287)
.. + .-++++.+|| ..+.+|+-..+ +...++..+ ...+.- +...+ -+.+...+
T Consensus 193 ~a--------------l------~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~----e~~LPLr~~S~l-~~~~la~~ 246 (302)
T PF05621_consen 193 RA--------------L------RTDPQLASRF-EPFELPRWELDEEFRRLLASF----ERALPLRKPSNL-ASPELARR 246 (302)
T ss_pred HH--------------h------ccCHHHHhcc-CCccCCCCCCCcHHHHHHHHH----HHhCCCCCCCCC-CCHHHHHH
Confidence 11 1 2258899999 88888888844 444444333 222221 11112 24566677
Q ss_pred HHHhccCCCCCchhHHHHHHHHHH
Q 047225 221 LIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 221 l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
|.+.+. +....+.+.++.+..
T Consensus 247 i~~~s~---G~iG~l~~ll~~aA~ 267 (302)
T PF05621_consen 247 IHERSE---GLIGELSRLLNAAAI 267 (302)
T ss_pred HHHHcC---CchHHHHHHHHHHHH
Confidence 776643 334577777765555
No 262
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=3.3e-07 Score=79.20 Aligned_cols=140 Identities=13% Similarity=0.190 Sum_probs=90.7
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcC--------CCCc--eEEecccccccccchhhhhCCCCCCC
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFG--------SKEA--MVRIDMSEYMEKHTVSKFFGSPPGYV 73 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (287)
+.++..++. ++-.+.++|+|+.|.||+++++.+++.+.- ...+ +..++.. | ...
T Consensus 6 ~~l~~~i~~-~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~------------g---~~i 69 (299)
T PRK07132 6 KFLDNSATQ-NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF------------D---KDL 69 (299)
T ss_pred HHHHHHHHh-CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC------------C---CcC
Confidence 334444433 233345889999999999999999998721 1111 1112100 0 001
Q ss_pred cccchhhHHHHHH-----hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhc
Q 047225 74 GFENGGQLTEAVR-----HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARES 148 (287)
Q Consensus 74 ~~~~~~~~~~~~~-----~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~ 148 (287)
+.++...+.+.+. .+++.|++||+++++....+++|++.+++. ++++.+|+.++.. .
T Consensus 70 ~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEP-----------p~~t~~il~~~~~-~------ 131 (299)
T PRK07132 70 SKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEP-----------PKDTYFLLTTKNI-N------ 131 (299)
T ss_pred CHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCC-----------CCCeEEEEEeCCh-H------
Confidence 1111122222221 136689999999999999999999999983 2356777766532 1
Q ss_pred cCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHH
Q 047225 149 ILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDI 195 (287)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~ 195 (287)
.+.+.+.+|+ ..+.|.|++.+++.+++..
T Consensus 132 -----------------kll~TI~SRc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 132 -----------------KVLPTIVSRC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----------------hChHHHHhCe-EEEECCCCCHHHHHHHHHH
Confidence 3457889999 9999999999999887754
No 263
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.73 E-value=4.2e-07 Score=80.92 Aligned_cols=142 Identities=18% Similarity=0.259 Sum_probs=82.2
Q ss_pred EEEEeccCCChHHHHHHHHHHH-hcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFE-YFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
|+++.||+|||||+++.+++.. ....+ ..++ ...++.. ......+.+ +...+|+|||
T Consensus 211 Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T---------~a~Lf~~--------L~~~~lg~v--~~~DlLI~DE 268 (449)
T TIGR02688 211 NLIELGPKGTGKSYIYNNLSPYVILISG---GTIT---------VAKLFYN--------ISTRQIGLV--GRWDVVAFDE 268 (449)
T ss_pred cEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCc---------HHHHHHH--------HHHHHHhhh--ccCCEEEEEc
Confidence 7999999999999999998876 21111 1111 1111110 001112222 2346999999
Q ss_pred cccc----cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhh-hccCCchHHHHHHHHHHHhcCChhHH
Q 047225 98 IEKA----HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIAR-ESILGSDQMERGVAEELRRRFRPEFL 172 (287)
Q Consensus 98 id~~----~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (287)
+..+ +.+.+..|...|+.|.+.-+. .....++-+++.+|.....-.. ...--+..+|+... ..+|+
T Consensus 269 vgylp~~~~~~~v~imK~yMesg~fsRG~--~~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~-------DsAfl 339 (449)
T TIGR02688 269 VATLKFAKPKELIGILKNYMESGSFTRGD--ETKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMR-------DSAFL 339 (449)
T ss_pred CCCCcCCchHHHHHHHHHHHHhCceeccc--eeeeeeeEEEEEcccCCcchhhcCcccccccCChhhh-------hhHHH
Confidence 9974 335778899999999887643 2233566777777765321100 00000333444433 36899
Q ss_pred hccCce---EEeCCCCHHHHHH
Q 047225 173 NRIDEV---IVFRQLNKMQLME 191 (287)
Q Consensus 173 ~r~~~~---i~~~~~~~~~~~~ 191 (287)
+||+.. ..+|-++.+...+
T Consensus 340 DRiH~yiPGWeipk~~~e~~t~ 361 (449)
T TIGR02688 340 DRIHGYLPGWEIPKIRKEMFSN 361 (449)
T ss_pred HhhhccCCCCcCccCCHHHccc
Confidence 999644 6778887665433
No 264
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=9e-08 Score=82.02 Aligned_cols=150 Identities=16% Similarity=0.273 Sum_probs=89.2
Q ss_pred hhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC----CceEEe-cccccccccchhh--hhCCCCCCCccc
Q 047225 4 ERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK----EAMVRI-DMSEYMEKHTVSK--FFGSPPGYVGFE 76 (287)
Q Consensus 4 ~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~----~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~ 76 (287)
+.++..+... +-.+.++|+|| +||+++|+.+|+.+.-.+ .++-.. +|..... ..-.+ .+.......+.+
T Consensus 12 ~~L~~~~~~~-rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~-~~HPD~~~i~p~~~~I~id 87 (290)
T PRK07276 12 QRFQTILEQD-RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQ-GEFSDVTVIEPQGQVIKTD 87 (290)
T ss_pred HHHHHHHHcC-CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhc-CCCCCeeeecCCCCcCCHH
Confidence 3444444443 33346899996 689999999999883221 111100 0110000 00000 010111112233
Q ss_pred chhhHHHHHHh----CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCc
Q 047225 77 NGGQLTEAVRH----RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGS 152 (287)
Q Consensus 77 ~~~~~~~~~~~----~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~ 152 (287)
+.+.+...+.. +++.|++||++|++.....++|++.+|+. .+++++|++|+...
T Consensus 88 qIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEP-----------p~~t~~iL~t~~~~----------- 145 (290)
T PRK07276 88 TIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEP-----------QSEIYIFLLTNDEN----------- 145 (290)
T ss_pred HHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCC-----------CCCeEEEEEECChh-----------
Confidence 33444444443 44689999999999999999999999983 23567777775432
Q ss_pred hHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHH
Q 047225 153 DQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVD 194 (287)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~ 194 (287)
.+.|.+.||| ..+.|++ +.+++.+++.
T Consensus 146 -------------~lLpTI~SRc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 146 -------------KVLPTIKSRT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred -------------hCchHHHHcc-eeeeCCC-cHHHHHHHHH
Confidence 3458899999 9999977 6777666663
No 265
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=2.7e-07 Score=77.27 Aligned_cols=128 Identities=15% Similarity=0.122 Sum_probs=81.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccch-----hhh--hCCCCCCCcccchhhHHHHHHh----
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTV-----SKF--FGSPPGYVGFENGGQLTEAVRH---- 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~---- 87 (287)
.++|+||.|+||..+|..+|+.+.-.... -.|+.-...... .++ +.......+.++.+.+.+.+..
T Consensus 9 A~Lf~G~~G~G~~~lA~~~A~~llC~~~~---~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 9 PLLLIERKGSFLKPFLYEYLTSIVCTKAN---GFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred ceeeeCCCCCcHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 59999999999999999999987322111 012211110000 000 0011112333334444443332
Q ss_pred -CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 88 -RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 88 -~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
+++.|++|+++|++.....++|++.+|+. ++++++|+.|+... .
T Consensus 86 ~~~~KV~II~~ae~m~~~AaNaLLK~LEEP-----------p~~t~fiLit~~~~------------------------~ 130 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNKQSANSLLKLIEEP-----------PKNTYGIFTTRNEN------------------------N 130 (261)
T ss_pred cCCCEEEEeccHhhhCHHHHHHHHHhhcCC-----------CCCeEEEEEECChH------------------------h
Confidence 34689999999999999999999999983 34667777776542 3
Q ss_pred CChhHHhccCceEEeCCCC
Q 047225 167 FRPEFLNRIDEVIVFRQLN 185 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~ 185 (287)
+.|.+.||+ +.+.|+++.
T Consensus 131 lLpTI~SRC-q~~~~~~~~ 148 (261)
T PRK05818 131 ILNTILSRC-VQYVVLSKE 148 (261)
T ss_pred CchHhhhhe-eeeecCChh
Confidence 458899999 888898883
No 266
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.70 E-value=2e-07 Score=85.83 Aligned_cols=90 Identities=21% Similarity=0.267 Sum_probs=65.9
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCc-eeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQ-TVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~-~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
+++=|=|+-+.+.+.+..|+.+.++|.+...+|- .+. -+.+||+.||.. +.+.-......+
T Consensus 257 Gl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~-~D~vIiaHsNE~-----------------E~~~F~~nk~nE 318 (644)
T PRK15455 257 GLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIP-FDGIILAHSNES-----------------EWQTFRNNKNNE 318 (644)
T ss_pred CcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceec-cceeEEecCCHH-----------------HHHHHhcCccch
Confidence 6666668888899999999999999988765553 343 356888888863 333333456678
Q ss_pred hHHhccCceEEeCCCC-HHHHHHHHHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLN-KMQLMEIVDIMLKE 199 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~-~~~~~~il~~~l~~ 199 (287)
+|++|+ ..|.+|..- ..+..+|.++.+..
T Consensus 319 A~~DRi-~~V~VPY~lr~~eE~kIYeKll~~ 348 (644)
T PRK15455 319 AFLDRI-YIVKVPYCLRVSEEIKIYEKLLRN 348 (644)
T ss_pred hhhceE-EEEeCCccCChhHHHHHHHHHhcC
Confidence 999999 999999887 45667788766643
No 267
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.62 E-value=1.3e-07 Score=69.32 Aligned_cols=93 Identities=18% Similarity=0.391 Sum_probs=55.6
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCC-----CceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSK-----EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
|+|+||||+|||++++.|+..+.... ..++..+. ...+..-.. +..+++
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~------------------------~~~~w~gY~--~q~vvi 54 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNP------------------------GDKFWDGYQ--GQPVVI 54 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCC------------------------ccchhhccC--CCcEEE
Confidence 57999999999999999998873210 11111111 012222222 225999
Q ss_pred EcCcccccHH----HHHHHHHhhcCceeecCC----CceeeccceEEEEeec
Q 047225 95 FDEIEKAHRD----VLNVMLQLLDDGRVTDGK----GQTVDLKNTIIIMTSN 138 (287)
Q Consensus 95 iDeid~~~~~----~~~~L~~~l~~~~~~~~~----g~~i~~~~~~iI~t~n 138 (287)
+||+...... ....+.+++....+...- .....+.-.+||+|||
T Consensus 55 ~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN 106 (107)
T PF00910_consen 55 IDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSN 106 (107)
T ss_pred EeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCC
Confidence 9999987754 667788888865544321 1112233457788877
No 268
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.59 E-value=3e-07 Score=79.40 Aligned_cols=155 Identities=17% Similarity=0.272 Sum_probs=80.7
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHH--hcCCCCceEEecccccccc----cchhhhhCCCCCCC-cc
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFE--YFGSKEAMVRIDMSEYMEK----HTVSKFFGSPPGYV-GF 75 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~--l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~ 75 (287)
+++....+.........+.++|++|+|||++|+.+++. .......++.++++..... ..+...++...... ..
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 84 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDP 84 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCC
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34444444443344568999999999999999999988 4333333444555443322 12233333332111 11
Q ss_pred cc----hhhHHHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCC
Q 047225 76 EN----GGQLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILG 151 (287)
Q Consensus 76 ~~----~~~~~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~ 151 (287)
.. ...+.+.+... +.+++||+++... ..+.+...+... ..++.+|+||....-
T Consensus 85 ~~~~~~~~~l~~~L~~~-~~LlVlDdv~~~~--~~~~l~~~~~~~-----------~~~~kilvTTR~~~v--------- 141 (287)
T PF00931_consen 85 KDIEELQDQLRELLKDK-RCLLVLDDVWDEE--DLEELREPLPSF-----------SSGSKILVTTRDRSV--------- 141 (287)
T ss_dssp SSHHHHHHHHHHHHCCT-SEEEEEEEE-SHH--HH-------HCH-----------HSS-EEEEEESCGGG---------
T ss_pred cccccccccchhhhccc-cceeeeeeecccc--cccccccccccc-----------ccccccccccccccc---------
Confidence 11 22344455555 6899999998655 333333333221 024568888854210
Q ss_pred chHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHH
Q 047225 152 SDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIML 197 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l 197 (287)
......-...+.+.+++.++..+++....
T Consensus 142 -----------------~~~~~~~~~~~~l~~L~~~ea~~L~~~~~ 170 (287)
T PF00931_consen 142 -----------------AGSLGGTDKVIELEPLSEEEALELFKKRA 170 (287)
T ss_dssp -----------------GTTHHSCEEEEECSS--HHHHHHHHHHHH
T ss_pred -----------------ccccccccccccccccccccccccccccc
Confidence 01112213679999999999999887664
No 269
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.5e-06 Score=78.43 Aligned_cols=136 Identities=27% Similarity=0.414 Sum_probs=79.0
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc-ccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEE
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS-EYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 93 (287)
.|+-.++|.||||+|||+||..+|... ..|++.+--. +..--+.....- . ...+++-.-..+.+++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S---~FPFvKiiSpe~miG~sEsaKc~---------~-i~k~F~DAYkS~lsii 602 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSS---DFPFVKIISPEDMIGLSESAKCA---------H-IKKIFEDAYKSPLSII 602 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhc---CCCeEEEeChHHccCccHHHHHH---------H-HHHHHHHhhcCcceEE
Confidence 445579999999999999999999877 6777755321 111100000000 0 0123332333466899
Q ss_pred EEcCcccc----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 94 LFDEIEKA----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 94 ~iDeid~~----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
++|+++++ +.-++.+|+-++.... +.| +-++|++|.....-+.+
T Consensus 603 vvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~p---pkg------~kLli~~TTS~~~vL~~----------------- 656 (744)
T KOG0741|consen 603 VVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQP---PKG------RKLLIFGTTSRREVLQE----------------- 656 (744)
T ss_pred EEcchhhhhcccccCchhhHHHHHHHHHHhccCC---CCC------ceEEEEecccHHHHHHH-----------------
Confidence 99999965 2245556666666421 122 22455554432211111
Q ss_pred HhcCChhHHhccCceEEeCCCCH-HHHHHHHH
Q 047225 164 RRRFRPEFLNRIDEVIVFRQLNK-MQLMEIVD 194 (287)
Q Consensus 164 ~~~~~~~l~~r~~~~i~~~~~~~-~~~~~il~ 194 (287)
=.+++.|+..+.+|.++. +++.+++.
T Consensus 657 -----m~i~~~F~~~i~Vpnl~~~~~~~~vl~ 683 (744)
T KOG0741|consen 657 -----MGILDCFSSTIHVPNLTTGEQLLEVLE 683 (744)
T ss_pred -----cCHHHhhhheeecCccCchHHHHHHHH
Confidence 256788888899999996 77777773
No 270
>PRK04296 thymidine kinase; Provisional
Probab=98.47 E-value=1.5e-06 Score=70.55 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=54.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc--cccccccchhhhhCCCCCCCcccchhhHHHHHH--hCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM--SEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVR--HRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~il~ 94 (287)
..+++||+|+|||+++..++..+...+...+.+.. ........+...+|.............+...+. .....+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 57899999999999998888887555666665633 111111112222221111011112223333332 34557999
Q ss_pred EcCcccccHHHHHHHHHhhc
Q 047225 95 FDEIEKAHRDVLNVMLQLLD 114 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~ 114 (287)
|||++.++.+.+..|.+.+.
T Consensus 84 IDEaq~l~~~~v~~l~~~l~ 103 (190)
T PRK04296 84 IDEAQFLDKEQVVQLAEVLD 103 (190)
T ss_pred EEccccCCHHHHHHHHHHHH
Confidence 99999998774444555543
No 271
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.46 E-value=2.6e-07 Score=94.41 Aligned_cols=147 Identities=28% Similarity=0.403 Sum_probs=101.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhC----CCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFG----SPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
+++|.||+|+|||++++.+|... +..++.++--+..+- ++.+| ...+...+.+ +.+..++..+. +++
T Consensus 442 pillqG~tssGKtsii~~la~~~---g~~~vrinnhehtd~---qeyig~y~~~~~g~l~fre-g~LV~Alr~G~--~~v 512 (1856)
T KOG1808|consen 442 PILLQGPTSSGKTSIIKELARAT---GKNIVRINNHEHTDL---QEYIGTYVADDNGDLVFRE-GVLVQALRNGD--WIV 512 (1856)
T ss_pred CeEEecCcCcCchhHHHHHHHHh---ccCceehhccccchH---HHHHHhhhcCCCCCeeeeh-hHHHHHHHhCC--EEE
Confidence 59999999999999999999998 666777766544433 33444 3344444444 56777777775 999
Q ss_pred EcCcccccHHHHHHHHHhhcC-ceeecCCCceeec--cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhH
Q 047225 95 FDEIEKAHRDVLNVMLQLLDD-GRVTDGKGQTVDL--KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEF 171 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~-~~~~~~~g~~i~~--~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (287)
+||++.++.+++++|.+++++ +++.++++..+-. +++++++|=|++..... ++.+..+|
T Consensus 513 lD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~g------------------rk~lsRa~ 574 (1856)
T KOG1808|consen 513 LDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGG------------------RKILSRAL 574 (1856)
T ss_pred eccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccch------------------hhhhhhcc
Confidence 999999999999999999998 8888887644333 46677777777532211 12344567
Q ss_pred HhccCceEEeCCCCHHHHHHHH
Q 047225 172 LNRIDEVIVFRQLNKMQLMEIV 193 (287)
Q Consensus 172 ~~r~~~~i~~~~~~~~~~~~il 193 (287)
++|| ..+.|....++++..++
T Consensus 575 ~~rf-~e~~f~~~~e~e~~~i~ 595 (1856)
T KOG1808|consen 575 RNRF-IELHFDDIGEEELEEIL 595 (1856)
T ss_pred cccc-hhhhhhhcCchhhhhhh
Confidence 7777 55555555555555554
No 272
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.45 E-value=4.1e-07 Score=67.49 Aligned_cols=76 Identities=21% Similarity=0.361 Sum_probs=47.3
Q ss_pred CCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC--CceEEeccc--ccccccchhhhhCCCCCCCcccchhhHHHHHH
Q 047225 11 RDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK--EAMVRIDMS--EYMEKHTVSKFFGSPPGYVGFENGGQLTEAVR 86 (287)
Q Consensus 11 ~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (287)
.+|++|+ ++.|.||||||||.+++.||+.++..+ .+++..-.+ .+.....+.. .......++.+.+.
T Consensus 48 ~~p~KpL-VlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~--------Yk~~L~~~I~~~v~ 118 (127)
T PF06309_consen 48 PNPRKPL-VLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDE--------YKEQLKSWIRGNVS 118 (127)
T ss_pred CCCCCCE-EEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHH--------HHHHHHHHHHHHHH
Confidence 4689998 899999999999999999999986543 333322221 1111111100 00011356777888
Q ss_pred hCCcEEEEE
Q 047225 87 HRPHSVILF 95 (287)
Q Consensus 87 ~~~~~il~i 95 (287)
.+++++++|
T Consensus 119 ~C~rslFIF 127 (127)
T PF06309_consen 119 RCPRSLFIF 127 (127)
T ss_pred hCCcCeeeC
Confidence 888877664
No 273
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.43 E-value=1e-06 Score=78.15 Aligned_cols=113 Identities=18% Similarity=0.266 Sum_probs=61.3
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc--cchhhhhCCCCCCCcccchhhHHHHHHhCCcE
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK--HTVSKFFGSPPGYVGFENGGQLTEAVRHRPHS 91 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (287)
..|. .++|+||+|+|||.|.-...+.+..... ..+..-.+... ..+...-+. .+....+.+.+.... .
T Consensus 60 ~~~~-GlYl~G~vG~GKT~Lmd~f~~~lp~~~k--~R~HFh~Fm~~vh~~l~~~~~~------~~~l~~va~~l~~~~-~ 129 (362)
T PF03969_consen 60 PPPK-GLYLWGPVGRGKTMLMDLFYDSLPIKRK--RRVHFHEFMLDVHSRLHQLRGQ------DDPLPQVADELAKES-R 129 (362)
T ss_pred CCCc-eEEEECCCCCchhHHHHHHHHhCCcccc--ccccccHHHHHHHHHHHHHhCC------CccHHHHHHHHHhcC-C
Confidence 3455 5999999999999999999999854221 11111111111 111111111 111123343333332 4
Q ss_pred EEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhh
Q 047225 92 VILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIAR 146 (287)
Q Consensus 92 il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~ 146 (287)
+|||||+.--+..---.|.++++.- . ..++++|+|||..+..+..
T Consensus 130 lLcfDEF~V~DiaDAmil~rLf~~l--~--------~~gvvlVaTSN~~P~~Ly~ 174 (362)
T PF03969_consen 130 LLCFDEFQVTDIADAMILKRLFEAL--F--------KRGVVLVATSNRPPEDLYK 174 (362)
T ss_pred EEEEeeeeccchhHHHHHHHHHHHH--H--------HCCCEEEecCCCChHHHcC
Confidence 9999999866554333333333310 0 0245799999998877643
No 274
>PHA00729 NTP-binding motif containing protein
Probab=98.38 E-value=2.7e-06 Score=70.05 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
+++|+|+||||||++|.+|++.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999987
No 275
>PHA02774 E1; Provisional
Probab=98.36 E-value=3.1e-06 Score=78.10 Aligned_cols=98 Identities=17% Similarity=0.229 Sum_probs=59.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+.++|+||||||||+++.+|.+.+.+ ..+..+|.. . +.-.+.+... .++++||
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G--~vi~fvN~~--s---------------------~FwLqpl~d~--ki~vlDD 487 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKG--KVISFVNSK--S---------------------HFWLQPLADA--KIALLDD 487 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC--CEEEEEECc--c---------------------ccccchhccC--CEEEEec
Confidence 47999999999999999999999842 233334431 0 0112222233 3999999
Q ss_pred ccccc-HHHHHHHHHhhcCceeecCC--CceeeccceEEEEeecCCch
Q 047225 98 IEKAH-RDVLNVMLQLLDDGRVTDGK--GQTVDLKNTIIIMTSNIGDS 142 (287)
Q Consensus 98 id~~~-~~~~~~L~~~l~~~~~~~~~--g~~i~~~~~~iI~t~n~~~~ 142 (287)
+...- .-....|+.+++...+.... ...+...-..+|+|||....
T Consensus 488 ~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~ 535 (613)
T PHA02774 488 ATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVK 535 (613)
T ss_pred CcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcc
Confidence 94332 22334688888865444321 22232334469999997644
No 276
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.32 E-value=2.3e-06 Score=66.97 Aligned_cols=38 Identities=39% Similarity=0.533 Sum_probs=31.5
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM 57 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 57 (287)
++++||||+|||+++..++......+.+++++++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 78999999999999999999886666777777775443
No 277
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.30 E-value=5.6e-06 Score=74.73 Aligned_cols=120 Identities=21% Similarity=0.295 Sum_probs=77.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEec-ccccccccchhhhhCCCCCCCcccchhhHHHHHHhC--CcEEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRID-MSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHR--PHSVILF 95 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~il~i 95 (287)
.+++.||.+|||||+++.+.+.+... .++++ |....+.....+ .+....... ....+|+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d---------------~~~~~~~~~~~~~~yifL 100 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLD---------------LLRAYIELKEREKSYIFL 100 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHH---------------HHHHHHHhhccCCceEEE
Confidence 69999999999999999988887443 44444 333332221111 111111111 3369999
Q ss_pred cCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhcc
Q 047225 96 DEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRI 175 (287)
Q Consensus 96 Deid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 175 (287)
||++.++ ++...+..+.+.+.. . ++|.+++..-.. ....+.|..|.
T Consensus 101 DEIq~v~-~W~~~lk~l~d~~~~-~-----------v~itgsss~ll~---------------------~~~~~~L~GR~ 146 (398)
T COG1373 101 DEIQNVP-DWERALKYLYDRGNL-D-----------VLITGSSSSLLS---------------------KEISESLAGRG 146 (398)
T ss_pred ecccCch-hHHHHHHHHHccccc-e-----------EEEECCchhhhc---------------------cchhhhcCCCc
Confidence 9999876 688999999987643 1 355544432111 12345677886
Q ss_pred CceEEeCCCCHHHHHH
Q 047225 176 DEVIVFRQLNKMQLME 191 (287)
Q Consensus 176 ~~~i~~~~~~~~~~~~ 191 (287)
..+.+.|+|..|...
T Consensus 147 -~~~~l~PlSF~Efl~ 161 (398)
T COG1373 147 -KDLELYPLSFREFLK 161 (398)
T ss_pred -eeEEECCCCHHHHHh
Confidence 889999999888865
No 278
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.29 E-value=1.6e-05 Score=69.27 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=68.6
Q ss_pred EEEEcCcccccHHHHHHHHHhhcCceeecCC-CceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 92 VILFDEIEKAHRDVLNVMLQLLDDGRVTDGK-GQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 92 il~iDeid~~~~~~~~~L~~~l~~~~~~~~~-g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
++=+-|+-+.+.+.+..|+.+.++|.+...+ ...+ .-+.+||+.+|+... +........++
T Consensus 236 i~ef~E~~K~~~~~L~~LL~~tqEg~ik~~~~~~~i-~~D~liiAhsNe~E~-----------------~~f~~~~~~eA 297 (358)
T PF08298_consen 236 IMEFVEMLKAPIEFLHPLLTATQEGNIKVDEDFGMI-PFDELIIAHSNEEEY-----------------NKFKNNKNNEA 297 (358)
T ss_pred hHHHHHHhcCcHHHHHHHhcchhcCceecCCccccc-ccceeEEecCCHHHH-----------------HHHhccccchh
Confidence 3333344466777888888888888777632 2222 235688888996422 11111233579
Q ss_pred HHhccCceEEeCCCC-HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh
Q 047225 171 FLNRIDEVIVFRQLN-KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE 224 (287)
Q Consensus 171 l~~r~~~~i~~~~~~-~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~ 224 (287)
|.+|+ ..|.+|++- ..+..+|.++.+.+. .+ .+..+.+.+++.++..
T Consensus 298 f~DRi-~~I~VPY~L~~s~E~kIY~k~~~~s--~l----~~~h~aP~~L~~aA~f 345 (358)
T PF08298_consen 298 FKDRI-EVIKVPYCLRVSEEVKIYEKLIGKS--DL----RDAHIAPHTLEMAARF 345 (358)
T ss_pred hhhhe-EEEeccccCCHHHHHHHHHHHhhhc--cc----cccccCchHHHHHHHH
Confidence 99999 999999866 667788887777431 11 1346777777777654
No 279
>PHA01747 putative ATP-dependent protease
Probab=98.22 E-value=2.2e-05 Score=68.34 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=84.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCC-CCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPP-GYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
|++=.||.|||||++-+.+.... +..+ ..+ ..+++.+|.... +..| .+ +.+.+|+|||
T Consensus 192 NliELgPRGTGKS~~f~eis~fs-----p~~i-SGG----~~TvA~LFyN~~t~~~G---------LV--g~~D~VaFDE 250 (425)
T PHA01747 192 HIIELSNRGTGKTTTFVILQELF-----NFRY-YTE----PPTYANLVYDAKTNALG---------LV--FLSNGLIFDE 250 (425)
T ss_pred eEEEecCCCCChhhHHHHhhhcC-----Ccee-eCC----CCchHHheEecCCCcee---------EE--eeccEEEEEc
Confidence 69999999999999999986533 1111 111 122233332111 1111 00 1236999999
Q ss_pred ccccc----HHHHHHHHHhhcCceeecCCCceee----ccceEEEEeecCCchhhhhhccCCchH-HHHHHHH-HHHhcC
Q 047225 98 IEKAH----RDVLNVMLQLLDDGRVTDGKGQTVD----LKNTIIIMTSNIGDSVIARESILGSDQ-MERGVAE-ELRRRF 167 (287)
Q Consensus 98 id~~~----~~~~~~L~~~l~~~~~~~~~g~~i~----~~~~~iI~t~n~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~ 167 (287)
+.... .+....+...|+.|.+.-+.+...+ ...+-+|+.+|.....+.. .+..+ +.+-+.. .+....
T Consensus 251 Va~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~asiVf~GNin~~~l~~---~~~~~~l~~~Lp~~~~~r~~ 327 (425)
T PHA01747 251 IQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIPIIFAGNPDSSTLDT---YQTPNYIKNYLVSYELFQSL 327 (425)
T ss_pred cccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhccceeEEEecCCCCccccc---cccchhHHHhcchhhhhccc
Confidence 99753 5788899999999988876542222 1367888888887432211 11111 2222211 011112
Q ss_pred ChhHHhccCce-EEeCCCCHHHHHH
Q 047225 168 RPEFLNRIDEV-IVFRQLNKMQLME 191 (287)
Q Consensus 168 ~~~l~~r~~~~-i~~~~~~~~~~~~ 191 (287)
.++|++||... +.+|.++.+++..
T Consensus 328 ~sA~LDRIhi~g~~~pkIs~d~~~s 352 (425)
T PHA01747 328 TKAILDRIAIIIVNEKKITYDDIIS 352 (425)
T ss_pred chHHhhhhhhcccccCcCCHHHhcc
Confidence 68999999522 5566667666544
No 280
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=0.00022 Score=58.99 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=91.4
Q ss_pred cEEEEEeccCC-ChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhh--CCCCCCCcccchhhHHHHHHh----CC
Q 047225 17 ISSFLFTGPTG-VGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFF--GSPPGYVGFENGGQLTEAVRH----RP 89 (287)
Q Consensus 17 ~~~ill~Gp~G-tGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~ 89 (287)
.+..+|.|..+ +||..++..++..+...+ +......+...+..-- +......+.++.+.+.+.+.. ++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~-----i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~ 89 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNS-----IPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISG 89 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccC-----cccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCC
Confidence 34699999998 999999999988873321 1111111111100000 000112333444555555543 45
Q ss_pred cEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 90 HSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 90 ~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
+.|++|+++|++.....++|++.+|+. +++..+|+.++... .+.|
T Consensus 90 ~KViII~~ae~mt~~AANALLKtLEEP-----------P~~t~fILit~~~~------------------------~LLp 134 (263)
T PRK06581 90 YKVAIIYSAELMNLNAANSCLKILEDA-----------PKNSYIFLITSRAA------------------------SIIS 134 (263)
T ss_pred cEEEEEechHHhCHHHHHHHHHhhcCC-----------CCCeEEEEEeCChh------------------------hCch
Confidence 679999999999999999999999984 23556776554432 3468
Q ss_pred hHHhccCceEEeCCCCHHHHHHHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLNKMQLMEIVDIML 197 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~~~~~~~il~~~l 197 (287)
.+.||| ..+.++.++.....+++...+
T Consensus 135 TIrSRC-q~i~~~~p~~~~~~e~~~~~~ 161 (263)
T PRK06581 135 TIRSRC-FKINVRSSILHAYNELYSQFI 161 (263)
T ss_pred hHhhce-EEEeCCCCCHHHHHHHHHHhc
Confidence 899999 999999999988888775443
No 281
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.20 E-value=6.2e-05 Score=58.08 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=25.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCce
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAM 48 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 48 (287)
.++++|+||+||||++..+++.+...+...
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 599999999999999999999986554444
No 282
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.18 E-value=9.1e-06 Score=66.14 Aligned_cols=114 Identities=21% Similarity=0.318 Sum_probs=63.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccc--c---cchhhhhCCCCC--CCcccchhhH---HHHHHhC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYME--K---HTVSKFFGSPPG--YVGFENGGQL---TEAVRHR 88 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~ 88 (287)
.++|+||+|+||||++-.||..+...+..+..+++..+.- . ....+.++-+.. ....+....+ .+.....
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhhc
Confidence 7999999999999998888888754455565555554432 1 223344442211 1111111222 2333444
Q ss_pred CcEEEEEcCcccccH--HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCch
Q 047225 89 PHSVILFDEIEKAHR--DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDS 142 (287)
Q Consensus 89 ~~~il~iDeid~~~~--~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~ 142 (287)
...+++||-..+.+. +....|..+++.- ......++++++.+..
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~----------~~~~~~LVlsa~~~~~ 128 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEAL----------NPDEVHLVLSATMGQE 128 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHH----------SSSEEEEEEEGGGGGH
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhc----------CCccceEEEecccChH
Confidence 557999999887654 4555666655531 1124567777776644
No 283
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.17 E-value=8.7e-06 Score=66.33 Aligned_cols=102 Identities=21% Similarity=0.283 Sum_probs=57.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc----------cchhhhhCCCCCCCcccchhhHHHHHHhC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK----------HTVSKFFGSPPGYVGFENGGQLTEAVRHR 88 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (287)
..++.||||||||++++.+...+...+..++....+.-... .++..++........... .. ..
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~-~~------~~ 92 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGR-PE------LP 92 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSS-CC-------T
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCccccccc-cc------CC
Confidence 58889999999999999998888555555554444321111 112222211111000000 00 12
Q ss_pred CcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCC
Q 047225 89 PHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIG 140 (287)
Q Consensus 89 ~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~ 140 (287)
...+++|||+..++......|+..+.. .+..+|+..++.
T Consensus 93 ~~~vliVDEasmv~~~~~~~ll~~~~~-------------~~~klilvGD~~ 131 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSRQLARLLRLAKK-------------SGAKLILVGDPN 131 (196)
T ss_dssp STSEEEESSGGG-BHHHHHHHHHHS-T--------------T-EEEEEE-TT
T ss_pred cccEEEEecccccCHHHHHHHHHHHHh-------------cCCEEEEECCcc
Confidence 335999999999999999999988875 133577766653
No 284
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.15 E-value=1.3e-05 Score=65.51 Aligned_cols=95 Identities=23% Similarity=0.369 Sum_probs=52.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC-CCceEEecc-cccccccchhhhhCC-CCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS-KEAMVRIDM-SEYMEKHTVSKFFGS-PPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
+.++++||+|+||||+++++...+... ...++.+.. .++..... ...+.. ..+.........+...+...+ .+++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~-~~~i~q~~vg~~~~~~~~~i~~aLr~~p-d~ii 79 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESK-RSLINQREVGLDTLSFENALKAALRQDP-DVIL 79 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCc-cceeeecccCCCccCHHHHHHHHhcCCc-CEEE
Confidence 369999999999999999998887532 233343322 22211110 001100 011111112233445555544 7999
Q ss_pred EcCcccccHHHHHHHHHhhcCc
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~ 116 (287)
+||+. +++....+++....|
T Consensus 80 ~gEir--d~e~~~~~l~~a~~G 99 (198)
T cd01131 80 VGEMR--DLETIRLALTAAETG 99 (198)
T ss_pred EcCCC--CHHHHHHHHHHHHcC
Confidence 99995 555666666666654
No 285
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.15 E-value=1.5e-06 Score=69.85 Aligned_cols=53 Identities=28% Similarity=0.400 Sum_probs=31.1
Q ss_pred hhhhhccC--CCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 3 LERARVGI--RDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 3 ~~~~~~~~--~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
++++...+ ...+.+ .+++++|++|+|||++++.+...+.....-++.+++...
T Consensus 9 ~~~l~~~l~~~~~~~~-~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 9 IERLRDLLDAAQSGSP-RNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp HHHHHHTTGGTSS------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred HHHHHHHHHHHHcCCC-cEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 34444444 233333 379999999999999999998888443323667776655
No 286
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.13 E-value=1.7e-05 Score=68.63 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=62.2
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHhcCCCC-ceEEecccccccccchhhhhCCCCCCCcccchhhHH-HHHHhCCcE
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEYFGSKE-AMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLT-EAVRHRPHS 91 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 91 (287)
..+. .++|+|+-|.|||.|.-...+.++.... .....+...... ..+..+-|.. +....+. +...+..
T Consensus 63 ~~~~-GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH-~~l~~l~g~~------dpl~~iA~~~~~~~~-- 132 (367)
T COG1485 63 GPVR-GLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVH-QRLHTLQGQT------DPLPPIADELAAETR-- 132 (367)
T ss_pred CCCc-eEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHH-HHHHHHcCCC------CccHHHHHHHHhcCC--
Confidence 3344 5999999999999999999999965431 111111111110 1122222322 1112333 3344444
Q ss_pred EEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhh
Q 047225 92 VILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIA 145 (287)
Q Consensus 92 il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~ 145 (287)
+|||||+.--+..---.|.++++.- =..++.+++|||..+..+.
T Consensus 133 vLCfDEF~VtDI~DAMiL~rL~~~L----------f~~GV~lvaTSN~~P~~LY 176 (367)
T COG1485 133 VLCFDEFEVTDIADAMILGRLLEAL----------FARGVVLVATSNTAPDNLY 176 (367)
T ss_pred EEEeeeeeecChHHHHHHHHHHHHH----------HHCCcEEEEeCCCChHHhc
Confidence 9999999976665333333333320 0024578899999887663
No 287
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.09 E-value=1.3e-05 Score=77.99 Aligned_cols=169 Identities=18% Similarity=0.211 Sum_probs=109.4
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCC--CC-cccchhhHHHHHHhCCcEEEEEc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPG--YV-GFENGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~il~iD 96 (287)
++++||||+|||+.+...+..+ +..++.+|.++......+...++...+ .+ ++....... .-....+.+|++|
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~---g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~-~~~~~~~~vil~d 435 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKEL---GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNR-QSLNSDHFLILMD 435 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhc---ccceeecCccccccccHHHhhhhccccccchhhhhcccccc-cccccceeEEEEe
Confidence 6899999999999999999999 778888888876654444444432211 01 111000000 0111344699999
Q ss_pred CcccccH---HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHh
Q 047225 97 EIEKAHR---DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLN 173 (287)
Q Consensus 97 eid~~~~---~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (287)
|+|.+.. +.+..+..++.. ...-+|++||--.- -....++
T Consensus 436 evD~~~~~dRg~v~~l~~l~~k-------------s~~Piv~~cndr~~------------------------p~sr~~~ 478 (871)
T KOG1968|consen 436 EVDGMFGEDRGGVSKLSSLCKK-------------SSRPLVCTCNDRNL------------------------PKSRALS 478 (871)
T ss_pred ccccccchhhhhHHHHHHHHHh-------------ccCCeEEEecCCCC------------------------ccccchh
Confidence 9998865 566667777763 12247777775311 1122344
Q ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 174 RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 174 r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
+-...+.|+-|+...+..-+...+... .+.|+++.++.+....+ .++|+.+..+-.
T Consensus 479 ~~~~~l~f~kP~~~~i~~ri~si~~se---------~~ki~~~~l~~~s~~~~------~DiR~~i~~lq~ 534 (871)
T KOG1968|consen 479 RACSDLRFSKPSSELIRSRIMSICKSE---------GIKISDDVLEEISKLSG------GDIRQIIMQLQF 534 (871)
T ss_pred hhcceeeecCCcHHHHHhhhhhhhccc---------ceecCcHHHHHHHHhcc------cCHHHHHHHHhh
Confidence 444779999999998888776665432 46799999999998765 577777765444
No 288
>PRK10536 hypothetical protein; Provisional
Probab=98.09 E-value=1.9e-05 Score=66.15 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=28.2
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCC
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIG 140 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~ 140 (287)
++|++||++.+++.....+++-+.. ++.+|+++++.
T Consensus 178 ~~vIvDEaqn~~~~~~k~~ltR~g~--------------~sk~v~~GD~~ 213 (262)
T PRK10536 178 AVVILDEAQNVTAAQMKMFLTRLGE--------------NVTVIVNGDIT 213 (262)
T ss_pred CEEEEechhcCCHHHHHHHHhhcCC--------------CCEEEEeCChh
Confidence 7999999999999888777766653 44677777664
No 289
>PRK14974 cell division protein FtsY; Provisional
Probab=98.05 E-value=4.8e-05 Score=66.88 Aligned_cols=99 Identities=17% Similarity=0.298 Sum_probs=59.6
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc-----cchhhhhCCC--CCCCcccchhhHHH---H
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK-----HTVSKFFGSP--PGYVGFENGGQLTE---A 84 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~~~~~~~~~~~~---~ 84 (287)
+|. .++|+||+|+||||++..++..+...+..+..+++..+... ......+|-+ ....+......+.+ .
T Consensus 139 ~~~-vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 139 KPV-VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CCe-EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 344 79999999999999999999888655566666666544321 1112222221 11122221122222 2
Q ss_pred HHhCCcEEEEEcCccccc--HHHHHHHHHhhc
Q 047225 85 VRHRPHSVILFDEIEKAH--RDVLNVMLQLLD 114 (287)
Q Consensus 85 ~~~~~~~il~iDeid~~~--~~~~~~L~~~l~ 114 (287)
.......+++||...+++ ......|..+..
T Consensus 218 ~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~ 249 (336)
T PRK14974 218 AKARGIDVVLIDTAGRMHTDANLMDELKKIVR 249 (336)
T ss_pred HHhCCCCEEEEECCCccCCcHHHHHHHHHHHH
Confidence 233455799999999884 566677766654
No 290
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.04 E-value=3.1e-05 Score=61.36 Aligned_cols=25 Identities=40% Similarity=0.565 Sum_probs=21.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
+++|+|+||+||||+++.+.+.+..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc
Confidence 5899999999999999999998843
No 291
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.03 E-value=6.2e-06 Score=61.54 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+++.|+||+||||+++.|++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999998
No 292
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.03 E-value=2.3e-05 Score=69.47 Aligned_cols=97 Identities=24% Similarity=0.344 Sum_probs=53.9
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhcCC-CCceEEec-ccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYFGS-KEAMVRID-MSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
.+.++++||+|+||||+.+++...+... ...++++. ..++..........-...+....+....+...++..+ .+++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~p-d~i~ 200 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDP-DVIL 200 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCC-CEEE
Confidence 3579999999999999999999877432 33444432 2222211100000001111111122233445555544 8999
Q ss_pred EcCcccccHHHHHHHHHhhcCc
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~ 116 (287)
+||+. +++......+....|
T Consensus 201 vgEir--d~~~~~~~l~aa~tG 220 (343)
T TIGR01420 201 IGEMR--DLETVELALTAAETG 220 (343)
T ss_pred EeCCC--CHHHHHHHHHHHHcC
Confidence 99997 666656656666655
No 293
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.02 E-value=3.2e-05 Score=69.24 Aligned_cols=113 Identities=27% Similarity=0.311 Sum_probs=62.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC----CCCceEEecccccccc--c---chhhhhCCCCCCCcccchhhHHHHHH-hC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG----SKEAMVRIDMSEYMEK--H---TVSKFFGSPPGYVGFENGGQLTEAVR-HR 88 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~----~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 88 (287)
.++|+||+|+||||++..+|..+.. .+..+..+++..+... . .....++-+.. .... ...+...+. ..
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~-~~~~-~~~l~~~L~~~~ 253 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK-AIES-FKDLKEEITQSK 253 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE-eeCc-HHHHHHHHHHhC
Confidence 7999999999999999999987732 2344555555444321 1 11222222211 1111 123333222 24
Q ss_pred CcEEEEEcCcccccHHH--HHHHHHhhcCceeecCCCceeeccceEEEEeecCCch
Q 047225 89 PHSVILFDEIEKAHRDV--LNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDS 142 (287)
Q Consensus 89 ~~~il~iDeid~~~~~~--~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~ 142 (287)
...+++||.+.+.+.+. +..+..+++.... .....+++.++.+..
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~---------~~e~~LVlsat~~~~ 300 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGR---------DAEFHLAVSSTTKTS 300 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCC---------CCeEEEEEcCCCCHH
Confidence 55799999999887543 3455566553110 013467777766543
No 294
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.02 E-value=7.5e-05 Score=67.80 Aligned_cols=97 Identities=28% Similarity=0.359 Sum_probs=64.7
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEe-cccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEE
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRI-DMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 93 (287)
+|.+-++++||+|+||||+..++...+......++++ |.-+|.-+.-.+- ..+...|.+....+...++..| +|+
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~---qVN~k~gltfa~~LRa~LRqDP-DvI 331 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQV---QVNPKIGLTFARALRAILRQDP-DVI 331 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCccee---ecccccCCCHHHHHHHHhccCC-CeE
Confidence 4456799999999999999999999886555555544 3444432211110 1233456666666777777766 899
Q ss_pred EEcCcccccHHHHHHHHHhhcCce
Q 047225 94 LFDEIEKAHRDVLNVMLQLLDDGR 117 (287)
Q Consensus 94 ~iDeid~~~~~~~~~L~~~l~~~~ 117 (287)
++.||- +.+......+...+|.
T Consensus 332 mVGEIR--D~ETAeiavqAalTGH 353 (500)
T COG2804 332 MVGEIR--DLETAEIAVQAALTGH 353 (500)
T ss_pred EEeccC--CHHHHHHHHHHHhcCC
Confidence 999998 5555566666666664
No 295
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.02 E-value=2.9e-05 Score=66.13 Aligned_cols=150 Identities=19% Similarity=0.288 Sum_probs=88.8
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHH----HHHhCCc
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTE----AVRHRPH 90 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 90 (287)
.|.+|.+|+|.+|+||+++++..+... +..++.+..+.-.. ..++ ...+.. +--.+..
T Consensus 29 ~~~Gh~LLvG~~GsGr~sl~rLaa~i~---~~~~~~i~~~~~y~---~~~f------------~~dLk~~~~~ag~~~~~ 90 (268)
T PF12780_consen 29 QPRGHALLVGVGGSGRQSLARLAAFIC---GYEVFQIEITKGYS---IKDF------------KEDLKKALQKAGIKGKP 90 (268)
T ss_dssp STTEEEEEECTTTSCHHHHHHHHHHHT---TEEEE-TTTSTTTH---HHHH------------HHHHHHHHHHHHCS-S-
T ss_pred CCCCCeEEecCCCccHHHHHHHHHHHh---ccceEEEEeeCCcC---HHHH------------HHHHHHHHHHHhccCCC
Confidence 345799999999999999999887766 56666665533111 1111 012222 2223445
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecC-------------------CCc------eee------ccceEEEEeecC
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDG-------------------KGQ------TVD------LKNTIIIMTSNI 139 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~-------------------~g~------~i~------~~~~~iI~t~n~ 139 (287)
.+++++|-+-.+...++.+..++..|+++.= .|. ... -.+.-||++.+|
T Consensus 91 ~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rvr~nLHivl~~sp 170 (268)
T PF12780_consen 91 TVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERVRKNLHIVLCMSP 170 (268)
T ss_dssp EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHHCCCEEEEEEEST
T ss_pred eEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHHHhheeEEEEECC
Confidence 7889999887666666666666666653310 010 000 135566777766
Q ss_pred CchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHH
Q 047225 140 GDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEI 200 (287)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~ 200 (287)
....+. ..... -|+|++++ .+..+.+-+.+.+..+....+...
T Consensus 171 ~~~~~r-----------~~~~~------fPaL~~~c-tIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 171 VGPNFR-----------DRCRS------FPALVNCC-TIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp TTTCCC-----------HHHHH------HCCHHHHS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred CCchHH-----------HHHHh------Ccchhccc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence 544321 11111 27888888 889999999999999998887653
No 296
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.99 E-value=4.8e-06 Score=83.05 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=94.2
Q ss_pred EEEEeccCCChHHHHH-HHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccc-hhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELA-NALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFEN-GGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la-~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~il~iD 96 (287)
.++++||||+|||.+. -+|-..+ ...++++|.+.-.........+.....|...+- .....+-.. ...|+|+|
T Consensus 1496 ~~i~cGppGSgK~mlM~~sLrs~~---~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~v--K~lVLFcD 1570 (3164)
T COG5245 1496 SYIYCGPPGSGKEMLMCPSLRSEL---ITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVV--KDLVLFCD 1570 (3164)
T ss_pred eEEEECCCCCccchhcchhhhhhh---heeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcch--hheEEEee
Confidence 5999999999999854 3443333 456677777654433222222222211111000 000111000 12599999
Q ss_pred Cccc------ccHHHHHHHHHhhcCceeecC-CCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 97 EIEK------AHRDVLNVMLQLLDDGRVTDG-KGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 97 eid~------~~~~~~~~L~~~l~~~~~~~~-~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
||+. .++.++-.|+++++...+.-+ ...++...+.+++.+|||+.+.. +-.++.
T Consensus 1571 eInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~g-------------------Rv~~~e 1631 (3164)
T COG5245 1571 EINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEG-------------------RVKYYE 1631 (3164)
T ss_pred ccCCccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcc-------------------cCccHH
Confidence 9992 355677788899987554433 35566667889999999986653 113556
Q ss_pred hHHhccCceEEeCCCCHHHHHHHHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLK 198 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~~~~~~~il~~~l~ 198 (287)
.|+++- ..+.+..|+-..+.+|+...+.
T Consensus 1632 Rf~r~~-v~vf~~ype~~SL~~Iyea~l~ 1659 (3164)
T COG5245 1632 RFIRKP-VFVFCCYPELASLRNIYEAVLM 1659 (3164)
T ss_pred HHhcCc-eEEEecCcchhhHHHHHHHHHH
Confidence 666666 7788889998888888876554
No 297
>PHA02624 large T antigen; Provisional
Probab=97.97 E-value=3.5e-05 Score=71.62 Aligned_cols=126 Identities=20% Similarity=0.239 Sum_probs=73.8
Q ss_pred hhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHH
Q 047225 6 ARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAV 85 (287)
Q Consensus 6 ~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (287)
++..+.+..+. +.++|+||||||||+++++|.+.+.+ ..+.+++.... +. -++ +-+
T Consensus 421 lk~~l~giPKk-~~il~~GPpnTGKTtf~~sLl~~L~G---~vlsVNsPt~k----s~---------------FwL-~pl 476 (647)
T PHA02624 421 LKLIVENVPKR-RYWLFKGPVNSGKTTLAAALLDLCGG---KSLNVNCPPDK----LN---------------FEL-GCA 476 (647)
T ss_pred HHHHHhcCCCC-eEEEEECCCCCCHHHHHHHHHHHcCC---eEEEeeCCcch----hH---------------HHh-hhh
Confidence 44445553333 36999999999999999999999943 33334432211 00 011 111
Q ss_pred HhCCcEEEEEcCcccc-------cH----HHHHHHHHhhcCc-eeecCC----CceeeccceEEEEeecCCchhhhhhcc
Q 047225 86 RHRPHSVILFDEIEKA-------HR----DVLNVMLQLLDDG-RVTDGK----GQTVDLKNTIIIMTSNIGDSVIARESI 149 (287)
Q Consensus 86 ~~~~~~il~iDeid~~-------~~----~~~~~L~~~l~~~-~~~~~~----g~~i~~~~~~iI~t~n~~~~~~~~~~~ 149 (287)
. ...+++|||+... ++ +-...|+..++.. .+.... ...+.+| -.|+|||..
T Consensus 477 ~--D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~P--PlliT~Ney--------- 543 (647)
T PHA02624 477 I--DQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFP--PGIVTMNEY--------- 543 (647)
T ss_pred h--hceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCC--CeEEeecCc---------
Confidence 1 1248999999632 22 2346788888754 333211 1112222 478899963
Q ss_pred CCchHHHHHHHHHHHhcCChhHHhccCceEEeCCC
Q 047225 150 LGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQL 184 (287)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~ 184 (287)
.++..+.-||-..+.|.+=
T Consensus 544 ----------------~iP~T~~~Rf~~~~~F~~k 562 (647)
T PHA02624 544 ----------------LIPQTVKARFAKVLDFKPK 562 (647)
T ss_pred ----------------ccchhHHHHHHHhcccccc
Confidence 5677788888666777653
No 298
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=97.97 E-value=6.5e-05 Score=67.56 Aligned_cols=141 Identities=20% Similarity=0.290 Sum_probs=82.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
|++=.||.|||||++=+.+.... ..++.+.. +.+.+|...... -...+ +.+++|+|||+
T Consensus 210 NliELgPrGTGKS~vy~eiSp~~-------~liSGG~~----T~A~LFyn~~~~--------~~GlV--~~~D~VafDEv 268 (457)
T PF13337_consen 210 NLIELGPRGTGKSYVYKEISPYG-------ILISGGQV----TVAKLFYNMSTG--------QIGLV--GRWDVVAFDEV 268 (457)
T ss_pred ceEEEcCCCCCceeehhhcCccc-------EEEECCCc----chHHheeeccCC--------cceee--eeccEEEEEec
Confidence 69999999999999876664332 22222221 223333211110 00011 12369999999
Q ss_pred cccc---HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhcc--CCchHHHHHHHHHHHhcCChhHHh
Q 047225 99 EKAH---RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESI--LGSDQMERGVAEELRRRFRPEFLN 173 (287)
Q Consensus 99 d~~~---~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 173 (287)
.... ++.+..|...|+.|.+..+.. -...++-+++.+|.... +..... --+..+++... ..+|++
T Consensus 269 ~~i~f~d~d~i~imK~YMesG~fsRG~~--~i~a~as~vf~GNi~~~-v~~~~~~~~lf~~lP~~~~-------DsAflD 338 (457)
T PF13337_consen 269 AGIKFKDKDEIQIMKDYMESGSFSRGKE--EINADASMVFVGNINQS-VENMLKTSHLFEPLPEEMR-------DSAFLD 338 (457)
T ss_pred cCcccCChHHHHHHHHHHhccceeeccc--ccccceeEEEEcCcCCc-chhccccchhhhhcCHHHH-------HHHHHh
Confidence 9663 677799999999998886542 22246678888887622 111100 11333344333 469999
Q ss_pred ccCceE---EeCCCCHHHHH
Q 047225 174 RIDEVI---VFRQLNKMQLM 190 (287)
Q Consensus 174 r~~~~i---~~~~~~~~~~~ 190 (287)
||...+ .+|.++.+...
T Consensus 339 RiH~~iPGWeiPk~~~e~~t 358 (457)
T PF13337_consen 339 RIHGYIPGWEIPKIRPEMFT 358 (457)
T ss_pred HhheeccCccccccCHHHcc
Confidence 997664 57888766433
No 299
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.95 E-value=3.7e-05 Score=61.89 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=29.0
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
+++.||||||||+++..++......+.+..+++..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 789999999999999988777655566777777644
No 300
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.92 E-value=4.4e-05 Score=64.76 Aligned_cols=100 Identities=25% Similarity=0.382 Sum_probs=62.0
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhc-CCCCceEEe-cccccccccchhhhhC-CCCCCCcccchhhHHHHHHhCCcEE
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYF-GSKEAMVRI-DMSEYMEKHTVSKFFG-SPPGYVGFENGGQLTEAVRHRPHSV 92 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~-~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i 92 (287)
|.+-++++||+|+||||+..++-..+. ....+++++ |.-+|...+.- .++. ...|.........+..++++.| +|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skk-slI~QREvG~dT~sF~~aLraALReDP-DV 201 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKK-SLINQREVGRDTLSFANALRAALREDP-DV 201 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchH-hhhhHHHhcccHHHHHHHHHHHhhcCC-CE
Confidence 345699999999999988777777762 223455554 44555433211 1111 1111111112345666777766 89
Q ss_pred EEEcCcccccHHHHHHHHHhhcCceee
Q 047225 93 ILFDEIEKAHRDVLNVMLQLLDDGRVT 119 (287)
Q Consensus 93 l~iDeid~~~~~~~~~L~~~l~~~~~~ 119 (287)
+++-|+- +.+.+..-++..++|.+.
T Consensus 202 IlvGEmR--D~ETi~~ALtAAETGHLV 226 (353)
T COG2805 202 ILVGEMR--DLETIRLALTAAETGHLV 226 (353)
T ss_pred EEEeccc--cHHHHHHHHHHHhcCCEE
Confidence 9999987 677888888999987543
No 301
>PRK13695 putative NTPase; Provisional
Probab=97.91 E-value=0.0002 Score=57.08 Aligned_cols=24 Identities=42% Similarity=0.454 Sum_probs=21.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.++|+|++|+||||+++.++..+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999988764
No 302
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=8.7e-05 Score=65.99 Aligned_cols=95 Identities=22% Similarity=0.313 Sum_probs=58.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc--cccch---hhhhCCCCCCCcccchhhHHHHHHh----CC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM--EKHTV---SKFFGSPPGYVGFENGGQLTEAVRH----RP 89 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 89 (287)
.++|+||+|+||||++..||..+...+..+..+++..+. ....+ ....+-+ -.... ....+.+.+.. ..
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgip-v~v~~-d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-VIAVR-DEAAMTRALTYFKEEAR 320 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCc-EEecC-CHHHHHHHHHHHHhccC
Confidence 699999999999999999999886656666667766554 11111 1122211 11111 12334444432 23
Q ss_pred cEEEEEcCccccc--HHHHHHHHHhhcC
Q 047225 90 HSVILFDEIEKAH--RDVLNVMLQLLDD 115 (287)
Q Consensus 90 ~~il~iDeid~~~--~~~~~~L~~~l~~ 115 (287)
..++|||-..+.+ ...+..|..+++.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~ 348 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQ 348 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhh
Confidence 5799999998765 4456667777653
No 303
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.90 E-value=6.9e-05 Score=63.94 Aligned_cols=93 Identities=23% Similarity=0.315 Sum_probs=55.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEec-ccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRID-MSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 96 (287)
+.++|.||+|+||||+.+++...+......++++. ..++.-.......+ ....+.+....+...++..+ ++++++
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v---~~~~~~~~~~~l~~~lR~~P-D~i~vg 156 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQV---NEKAGLTFARGLRAILRQDP-DIIMVG 156 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEe---CCcCCcCHHHHHHHHhccCC-CEEEec
Confidence 46999999999999999999888754444555553 22322111000000 11123333345556666555 899999
Q ss_pred CcccccHHHHHHHHHhhcCc
Q 047225 97 EIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~~ 116 (287)
|+.. ++....+.+....|
T Consensus 157 EiR~--~e~a~~~~~aa~tG 174 (264)
T cd01129 157 EIRD--AETAEIAVQAALTG 174 (264)
T ss_pred cCCC--HHHHHHHHHHHHcC
Confidence 9984 44455566666665
No 304
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.87 E-value=0.00014 Score=67.25 Aligned_cols=94 Identities=22% Similarity=0.352 Sum_probs=57.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEec-ccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRID-MSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 96 (287)
+.++++||+|+||||+..++...+......++++. ..++.-.. +.+. ......|.+....+...++..| +++++.
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~-~~q~--~v~~~~g~~f~~~lr~~LR~dP-DvI~vG 318 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEG-IGQI--QVNPKIGLTFAAGLRAILRQDP-DIIMVG 318 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCC-CceE--EEccccCccHHHHHHHHHhcCC-CEEEEe
Confidence 46999999999999999988777754445555543 33332111 1000 0111223444456667777666 899999
Q ss_pred CcccccHHHHHHHHHhhcCce
Q 047225 97 EIEKAHRDVLNVMLQLLDDGR 117 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~~~ 117 (287)
|+. +.+......+...+|.
T Consensus 319 EiR--d~eta~~a~~aa~tGH 337 (486)
T TIGR02533 319 EIR--DLETAQIAIQASLTGH 337 (486)
T ss_pred CCC--CHHHHHHHHHHHHhCC
Confidence 998 4455555666666664
No 305
>PLN02674 adenylate kinase
Probab=97.87 E-value=0.00013 Score=61.28 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=27.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM 57 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 57 (287)
..++|.||||+||+|.++.|++.+ + +..+++++..
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~---~--~~his~Gdll 66 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY---C--LCHLATGDML 66 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc---C--CcEEchhHHH
Confidence 369999999999999999999987 2 4455555544
No 306
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.85 E-value=0.00016 Score=65.89 Aligned_cols=113 Identities=24% Similarity=0.375 Sum_probs=65.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc--CCCCceEEecccccccc-----cchhhhhCCCCCCCcccchhhHHHHHHh-CCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF--GSKEAMVRIDMSEYMEK-----HTVSKFFGSPPGYVGFENGGQLTEAVRH-RPH 90 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 90 (287)
.++|+||+|+||||++..||..+. ..+..+..+++..+... .......+-+. ..... ...+...+.. ...
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~-~~~~~-~~~l~~~l~~~~~~ 300 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV-EVVYD-PKELAKALEQLRDC 300 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCce-EccCC-HHhHHHHHHHhCCC
Confidence 699999999999999999988774 33566777777665321 11112222111 11111 1234444433 345
Q ss_pred EEEEEcCcccc--cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCch
Q 047225 91 SVILFDEIEKA--HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDS 142 (287)
Q Consensus 91 ~il~iDeid~~--~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~ 142 (287)
.+|+||..-.. +......|..+++.... .....++++++....
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~---------~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGE---------PIDVYLVLSATTKYE 345 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCC---------CCeEEEEEECCCCHH
Confidence 79999987654 44556677777762100 013467777776543
No 307
>PRK07261 topology modulation protein; Provisional
Probab=97.85 E-value=0.00029 Score=56.08 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|+||+||||+++.|+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 308
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.85 E-value=7.6e-05 Score=65.60 Aligned_cols=121 Identities=18% Similarity=0.306 Sum_probs=63.6
Q ss_pred CCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc-----cchhhhhCC-CCCCC-c--ccchhhHHH
Q 047225 13 PNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK-----HTVSKFFGS-PPGYV-G--FENGGQLTE 83 (287)
Q Consensus 13 ~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~-~--~~~~~~~~~ 83 (287)
|+.|. .++|+|..|||||+|.-.....+.+. ...-.+...++.-. ..+...-|. .+++. + ++....+.+
T Consensus 111 ~~~Pk-GlYlYG~VGcGKTmLMDlFy~~~~~i-~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~ 188 (467)
T KOG2383|consen 111 PGPPK-GLYLYGSVGCGKTMLMDLFYDALPPI-WRKQRVHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVAD 188 (467)
T ss_pred CCCCc-eEEEecccCcchhHHHHHHhhcCCch-hhhhhhhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHH
Confidence 44466 49999999999999999998776331 11111111111110 011111111 11111 1 122334554
Q ss_pred HHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhh
Q 047225 84 AVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIAR 146 (287)
Q Consensus 84 ~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~ 146 (287)
.+.+.. .+|+|||+.-.+-...-.|.++++.- + . ..+++++|+|..+..+..
T Consensus 189 eIa~ea-~lLCFDEfQVTDVADAmiL~rLf~~L-f--~-------~GvVlvATSNR~P~dLYk 240 (467)
T KOG2383|consen 189 EIAEEA-ILLCFDEFQVTDVADAMILKRLFEHL-F--K-------NGVVLVATSNRAPEDLYK 240 (467)
T ss_pred HHhhhc-eeeeechhhhhhHHHHHHHHHHHHHH-H--h-------CCeEEEEeCCCChHHHhh
Confidence 444433 59999999865554444444444420 0 0 134788899998877644
No 309
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.84 E-value=7.1e-05 Score=66.98 Aligned_cols=94 Identities=26% Similarity=0.390 Sum_probs=55.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccc-----ccchhhhhCCCCCCCccc-----chhhHHHHHHhC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYME-----KHTVSKFFGSPPGYVGFE-----NGGQLTEAVRHR 88 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 88 (287)
++++.||.|||||++.++|.+.+...+..+...-.+.... -.++...|+-+....... ......+.++..
T Consensus 24 ~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~~ 103 (364)
T PF05970_consen 24 NFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERLRKA 103 (364)
T ss_pred EEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhhhhh
Confidence 6999999999999999999998854333333222222111 122333444332211111 112233444444
Q ss_pred CcEEEEEcCcccccHHHHHHHHHhhc
Q 047225 89 PHSVILFDEIEKAHRDVLNVMLQLLD 114 (287)
Q Consensus 89 ~~~il~iDeid~~~~~~~~~L~~~l~ 114 (287)
.+|++||+..++......+-+.+.
T Consensus 104 --~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 104 --DVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred --eeeecccccchhHHHHHHHHHhhh
Confidence 499999999999998887765554
No 310
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.84 E-value=2.4e-05 Score=60.81 Aligned_cols=90 Identities=19% Similarity=0.274 Sum_probs=55.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccc---------hhhHHHHHHhCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFEN---------GGQLTEAVRHRP 89 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~ 89 (287)
.++|+|.+|+||||+|++|.+.+...+.+.+.++........ ... .++.. ...+...+...+
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l------~~d---l~fs~~dR~e~~rr~~~~A~ll~~~G 74 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL------NAD---LGFSKEDREENIRRIAEVAKLLADQG 74 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT------TTT-----SSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc------CCC---CCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 699999999999999999999998778888888876554321 111 11111 123344444444
Q ss_pred cEEEEEcCcccccHHHHHHHHHhhcCceee
Q 047225 90 HSVILFDEIEKAHRDVLNVMLQLLDDGRVT 119 (287)
Q Consensus 90 ~~il~iDeid~~~~~~~~~L~~~l~~~~~~ 119 (287)
.++++. +--...+..+..++.+..+.+.
T Consensus 75 -~ivIva-~isp~~~~R~~~R~~~~~~~f~ 102 (156)
T PF01583_consen 75 -IIVIVA-FISPYREDREWARELIPNERFI 102 (156)
T ss_dssp -SEEEEE-----SHHHHHHHHHHHHTTEEE
T ss_pred -CeEEEe-eccCchHHHHHHHHhCCcCceE
Confidence 355555 3334567778888888865444
No 311
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.84 E-value=9.9e-05 Score=60.34 Aligned_cols=92 Identities=26% Similarity=0.300 Sum_probs=54.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC-----CCceEEecccccccccchh-hhhCCCCCCCc--------ccchhhHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS-----KEAMVRIDMSEYMEKHTVS-KFFGSPPGYVG--------FENGGQLTE 83 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~ 83 (287)
.|.++.|||||||||+.+-+|..+... ......+|-+. .+. -+.|.+.-..| --...-+..
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDers-----EIag~~~gvpq~~~g~R~dVld~cpk~~gmmm 212 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERS-----EIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMM 212 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccc-----hhhccccCCchhhhhhhhhhcccchHHHHHHH
Confidence 369999999999999999999987321 22333333321 111 11111110001 001223556
Q ss_pred HHHhCCcEEEEEcCcccccHHHHHHHHHhhcCc
Q 047225 84 AVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 84 ~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~ 116 (287)
++++....|+++||+.... -..++++.++.|
T Consensus 213 aIrsm~PEViIvDEIGt~~--d~~A~~ta~~~G 243 (308)
T COG3854 213 AIRSMSPEVIIVDEIGTEE--DALAILTALHAG 243 (308)
T ss_pred HHHhcCCcEEEEeccccHH--HHHHHHHHHhcC
Confidence 7777777899999998653 334567777764
No 312
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.82 E-value=1.4e-05 Score=60.62 Aligned_cols=40 Identities=33% Similarity=0.513 Sum_probs=31.4
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK 59 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 59 (287)
+-.++++++|-|||||||++..||... .+-+++++++...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~-----~~~~i~isd~vkE 44 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKT-----GLEYIEISDLVKE 44 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHh-----CCceEehhhHHhh
Confidence 334479999999999999999999876 3446677776654
No 313
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.81 E-value=0.00098 Score=55.64 Aligned_cols=137 Identities=22% Similarity=0.332 Sum_probs=74.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhh-hCCCCCC-Ccccc--------hhhHHHHHH--
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKF-FGSPPGY-VGFEN--------GGQLTEAVR-- 86 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~--------~~~~~~~~~-- 86 (287)
.+++.|++|||||+++..|...+......++.+ +..... ..... +...... ...++ ...+.+...
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~-t~~~n~--~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI-TPEYNN--EYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE-ecCCch--hhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 599999999999999999988774433333333 222111 11111 1110000 00000 011112222
Q ss_pred --h--CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 87 --H--RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 87 --~--~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
. .++.++++||+..- .--...+..++..|+.. ++.+|+++...-
T Consensus 92 ~~~k~~~~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~----------~is~i~l~Q~~~--------------------- 139 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK-KLKSKILRQFFNNGRHY----------NISIIFLSQSYF--------------------- 139 (241)
T ss_pred cccCCCCCeEEEEeCCCCc-hhhhHHHHHHHhccccc----------ceEEEEEeeecc---------------------
Confidence 0 23579999998642 11233477777766543 346777776531
Q ss_pred HHhcCChhHHhccCceEEeCCCCHHHHHHHHH
Q 047225 163 LRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVD 194 (287)
Q Consensus 163 ~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~ 194 (287)
.+++.+..-++..+.++ .+..++..++.
T Consensus 140 ---~lp~~iR~n~~y~i~~~-~s~~dl~~i~~ 167 (241)
T PF04665_consen 140 ---HLPPNIRSNIDYFIIFN-NSKRDLENIYR 167 (241)
T ss_pred ---cCCHHHhhcceEEEEec-CcHHHHHHHHH
Confidence 45677767776666664 68888777764
No 314
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.81 E-value=0.00033 Score=61.34 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=37.8
Q ss_pred hhhhhccCCCCCCCcE-EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc
Q 047225 3 LERARVGIRDPNRPIS-SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM 57 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 57 (287)
++++...+.+.....+ +++|+|-+|||||.+++.+-+.. +.+.+.++|-+.-
T Consensus 15 i~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~---n~~~vw~n~~ecf 67 (438)
T KOG2543|consen 15 IRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL---NLENVWLNCVECF 67 (438)
T ss_pred HHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc---CCcceeeehHHhc
Confidence 4555555555444232 47999999999999999999988 6677777775433
No 315
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.81 E-value=0.00024 Score=56.46 Aligned_cols=80 Identities=21% Similarity=0.289 Sum_probs=46.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhh----hCCCCCCCcccchhhHHHHHHh--CCcEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKF----FGSPPGYVGFENGGQLTEAVRH--RPHSV 92 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~i 92 (287)
.+++.|+||+|||++|..++..+ +.+.+++......+.....+. ...+.++...+....+.+.+.. ....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~ 79 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRC 79 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCE
Confidence 58999999999999999999886 345556655443332111111 1112233223332345555444 22358
Q ss_pred EEEcCcccc
Q 047225 93 ILFDEIEKA 101 (287)
Q Consensus 93 l~iDeid~~ 101 (287)
++||-+...
T Consensus 80 VlID~Lt~~ 88 (170)
T PRK05800 80 VLVDCLTTW 88 (170)
T ss_pred EEehhHHHH
Confidence 999987744
No 316
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.80 E-value=0.00014 Score=66.16 Aligned_cols=97 Identities=19% Similarity=0.244 Sum_probs=55.2
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc--c---chhhhhCCCCCC--CcccchhhHHHHHHh
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK--H---TVSKFFGSPPGY--VGFENGGQLTEAVRH 87 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 87 (287)
+|. .++|+|++|+||||++..||..+...+..+..+++..+... . .+....+.+... ...+....+.+.+..
T Consensus 94 ~p~-vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 94 KPQ-TIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCe-EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 344 79999999999999999999988665667777777665431 1 111222211100 001111112233322
Q ss_pred -CCcEEEEEcCccccc--HHHHHHHHHh
Q 047225 88 -RPHSVILFDEIEKAH--RDVLNVMLQL 112 (287)
Q Consensus 88 -~~~~il~iDeid~~~--~~~~~~L~~~ 112 (287)
....+|+||...+.+ ....+.|..+
T Consensus 173 ~~~~DvVIIDTAGr~~~d~~lm~El~~l 200 (437)
T PRK00771 173 FKKADVIIVDTAGRHALEEDLIEEMKEI 200 (437)
T ss_pred hhcCCEEEEECCCcccchHHHHHHHHHH
Confidence 223699999997654 3444444444
No 317
>PF14516 AAA_35: AAA-like domain
Probab=97.80 E-value=0.00063 Score=60.08 Aligned_cols=49 Identities=22% Similarity=0.188 Sum_probs=39.1
Q ss_pred hhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc
Q 047225 6 ARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM 57 (287)
Q Consensus 6 ~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 57 (287)
|-..+..|+. .+.+.||..+|||++...+.+.+...+...+++++....
T Consensus 23 ~~~~i~~~G~---~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~ 71 (331)
T PF14516_consen 23 CYQEIVQPGS---YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLG 71 (331)
T ss_pred HHHHHhcCCC---EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCC
Confidence 3444555543 699999999999999999998887678889999998653
No 318
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.79 E-value=6.4e-05 Score=62.02 Aligned_cols=20 Identities=35% Similarity=0.547 Sum_probs=18.7
Q ss_pred EEEEeccCCChHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALA 38 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la 38 (287)
.++|+|+||+|||++|+.++
T Consensus 14 ~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred EEEEECCCCCCHHHHHHhcC
Confidence 69999999999999999885
No 319
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.79 E-value=0.00016 Score=65.37 Aligned_cols=96 Identities=17% Similarity=0.301 Sum_probs=57.1
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhh--hCCCCC---CCcccchhh------HHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKF--FGSPPG---YVGFENGGQ------LTEAVR 86 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~------~~~~~~ 86 (287)
..++|+|++|+||||++..||..+...+..+..+++..+... ....+ ++...+ +.......+ ..+.+.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~a-A~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAG-AFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchh-HHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999988655667777777665531 11111 111111 111111111 122333
Q ss_pred hCCcEEEEEcCcccccH--HHHHHHHHhhc
Q 047225 87 HRPHSVILFDEIEKAHR--DVLNVMLQLLD 114 (287)
Q Consensus 87 ~~~~~il~iDeid~~~~--~~~~~L~~~l~ 114 (287)
...+.+|++|=..+.+. .....|..+.+
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~ 209 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAE 209 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhh
Confidence 34568999999987755 45555655543
No 320
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.79 E-value=0.00014 Score=59.31 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=22.5
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCC
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIG 140 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~ 140 (287)
+++++||+..+++.....+++-+.+ ++.+|+++++.
T Consensus 121 ~~iIvDEaQN~t~~~~k~ilTR~g~--------------~skii~~GD~~ 156 (205)
T PF02562_consen 121 AFIIVDEAQNLTPEELKMILTRIGE--------------GSKIIITGDPS 156 (205)
T ss_dssp EEEEE-SGGG--HHHHHHHHTTB-T--------------T-EEEEEE---
T ss_pred eEEEEecccCCCHHHHHHHHcccCC--------------CcEEEEecCce
Confidence 8999999999999987777665553 45688877764
No 321
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.79 E-value=0.00016 Score=62.36 Aligned_cols=150 Identities=17% Similarity=0.237 Sum_probs=77.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEe--cccccccccchhhhhC--------CCCCCCccc-chhhHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRI--DMSEYMEKHTVSKFFG--------SPPGYVGFE-NGGQLTEAVRH 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~ 87 (287)
.++++||.|+|||.+...........+..++.+ |..-..+...+..+.. .......++ .-..+...+++
T Consensus 51 sviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~ 130 (408)
T KOG2228|consen 51 SVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKK 130 (408)
T ss_pred ceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhc
Confidence 699999999999987655444422223444444 4332222211111100 000000111 12345555555
Q ss_pred CCc-----EEEEEcCccc-ccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHH
Q 047225 88 RPH-----SVILFDEIEK-AHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAE 161 (287)
Q Consensus 88 ~~~-----~il~iDeid~-~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~ 161 (287)
+.. -++++||+|. ++..-|-.|..+++--. .-..|-+++-+||....- +.+..
T Consensus 131 ~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisq-------s~r~Piciig~Ttrld~l--------------E~LEK 189 (408)
T KOG2228|consen 131 GDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQ-------SARAPICIIGVTTRLDIL--------------ELLEK 189 (408)
T ss_pred CCCCCCceEEEEeehhhccccchhhHHHHHHHHHHh-------hcCCCeEEEEeeccccHH--------------HHHHH
Confidence 321 3667789995 45666777777776311 011234566667765322 12222
Q ss_pred HHHhcCChhHHhccCce--EEeCCCCHHHHHHHHHHHH
Q 047225 162 ELRRRFRPEFLNRIDEV--IVFRQLNKMQLMEIVDIML 197 (287)
Q Consensus 162 ~~~~~~~~~l~~r~~~~--i~~~~~~~~~~~~il~~~l 197 (287)
...+||.+. +.+|+++.++..++++..+
T Consensus 190 --------RVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 190 --------RVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred --------HHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 445677654 4445566888888887776
No 322
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.78 E-value=0.00035 Score=56.11 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=34.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchh
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVS 63 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 63 (287)
.+-+.||.|.||||+.|.||..+.++...+..-.++...++..+.
T Consensus 30 i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vr 74 (245)
T COG4555 30 ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVR 74 (245)
T ss_pred EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHh
Confidence 688999999999999999999998776666555555544444333
No 323
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00011 Score=71.40 Aligned_cols=138 Identities=17% Similarity=0.240 Sum_probs=82.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCC-------CceEEecccccccccchhhhhCCCCCCCcccchhhHHHHH---H-
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSK-------EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAV---R- 86 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~- 86 (287)
+|-+|+|.||+|||.++..+++.+.... ..++.+++...... ..+.|..+ ..+...+ .
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aG----------a~~rge~E-~rlk~l~k~v~~ 277 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAG----------AKRRGEFE-ERLKELLKEVES 277 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccC----------cccchHHH-HHHHHHHHHHhc
Confidence 4688999999999999999999883322 33344444331111 11111111 2233333 2
Q ss_pred hCCcEEEEEcCcccc--------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHH
Q 047225 87 HRPHSVILFDEIEKA--------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERG 158 (287)
Q Consensus 87 ~~~~~il~iDeid~~--------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~ 158 (287)
.++.-|||+||++-+ --+..+.|...+..|. ..+|.|+.. +.
T Consensus 278 ~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~-------------l~~IGatT~-----------------e~ 327 (898)
T KOG1051|consen 278 GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGG-------------LWCIGATTL-----------------ET 327 (898)
T ss_pred CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCC-------------eEEEecccH-----------------HH
Confidence 456679999999943 2256667777777654 246665542 12
Q ss_pred HHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHH
Q 047225 159 VAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKE 199 (287)
Q Consensus 159 ~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~ 199 (287)
+....++ .|+|-.|| ..+.++-|+.++...|+...-.+
T Consensus 328 Y~k~iek--dPalErrw-~l~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 328 YRKCIEK--DPALERRW-QLVLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred HHHHHhh--CcchhhCc-ceeEeccCcccchhhhhhhhhhh
Confidence 2222221 47888888 88899999988877777555443
No 324
>PRK08118 topology modulation protein; Reviewed
Probab=97.77 E-value=2.5e-05 Score=61.92 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=25.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEec
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRID 52 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 52 (287)
.++++||||+||||+|+.|++.+ +.+++.+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l---~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL---NIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCceecc
Confidence 48999999999999999999998 44444433
No 325
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.76 E-value=0.00033 Score=62.19 Aligned_cols=111 Identities=24% Similarity=0.380 Sum_probs=62.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhc--CCCCceEEecccccc--cc---cchhhhhCCCCCCCcccchhhHHHHHHh-CC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYF--GSKEAMVRIDMSEYM--EK---HTVSKFFGSPPGYVGFENGGQLTEAVRH-RP 89 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~--~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 89 (287)
.++.|+||+|+||||+.-.||..+. .....+..++...|. .. ..+.++.+-+... ......+.+++.. ..
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v--v~~~~el~~ai~~l~~ 281 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV--VYSPKELAEAIEALRD 281 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE--ecCHHHHHHHHHHhhc
Confidence 4799999999999987777777664 223333334443333 22 2233444332111 1112344433333 23
Q ss_pred cEEEEEcCcccccH--HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCC
Q 047225 90 HSVILFDEIEKAHR--DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIG 140 (287)
Q Consensus 90 ~~il~iDeid~~~~--~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~ 140 (287)
..+|++|=+.+-+. .....|..+++.. ..+ +..++++++..
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~-~~i---------~~~Lvlsat~K 324 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVS-HSI---------EVYLVLSATTK 324 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhcc-ccc---------eEEEEEecCcc
Confidence 35999999987644 5666788888753 111 34566666655
No 326
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.76 E-value=7.5e-05 Score=58.97 Aligned_cols=94 Identities=14% Similarity=0.135 Sum_probs=52.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC----Ccccchh-hHHHHHHhCCcEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY----VGFENGG-QLTEAVRHRPHSVI 93 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~il 93 (287)
.+.|.||+|+||||+.+.++....+....+ .++........ .........++ .+..... .+..++...+ .++
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v-~~~g~~~~~~~-~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p-~il 104 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSGEI-LVDGKEVSFAS-PRDARRAGIAMVYQLSVGERQMVEIARALARNA-RLL 104 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECCEECCcCC-HHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCC-CEE
Confidence 689999999999999999998875544433 33322211100 00000001111 1111111 1233444443 799
Q ss_pred EEcCcc-cccHHHHHHHHHhhcC
Q 047225 94 LFDEIE-KAHRDVLNVMLQLLDD 115 (287)
Q Consensus 94 ~iDeid-~~~~~~~~~L~~~l~~ 115 (287)
++||-. .+++.....+.+++.+
T Consensus 105 llDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 105 ILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred EEECCCcCCCHHHHHHHHHHHHH
Confidence 999976 6787777777776653
No 327
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.76 E-value=0.00023 Score=60.73 Aligned_cols=95 Identities=21% Similarity=0.278 Sum_probs=51.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc---cccchhhhhCC-CCCCC--------cccchhhHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM---EKHTVSKFFGS-PPGYV--------GFENGGQLTEAV 85 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~ 85 (287)
.+++++||+|+||||+.+.++..+......+ .++..+.. +...+...+.. +.... +......+...+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i-~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i 190 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQL-GLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLI 190 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceE-EECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHH
Confidence 3799999999999999999999885433222 12211111 01111111111 10111 111123355566
Q ss_pred HhCCcEEEEEcCcccccHHHHHHHHHhhcC
Q 047225 86 RHRPHSVILFDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 86 ~~~~~~il~iDeid~~~~~~~~~L~~~l~~ 115 (287)
......++++||+.. .+....+.+.++.
T Consensus 191 ~~~~P~villDE~~~--~e~~~~l~~~~~~ 218 (270)
T TIGR02858 191 RSMSPDVIVVDEIGR--EEDVEALLEALHA 218 (270)
T ss_pred HhCCCCEEEEeCCCc--HHHHHHHHHHHhC
Confidence 655668999999753 3444445555543
No 328
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.75 E-value=0.00056 Score=54.15 Aligned_cols=96 Identities=23% Similarity=0.307 Sum_probs=53.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEE--------ecccccccccchhhhhC--CCCCCCcccchh-hHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVR--------IDMSEYMEKHTVSKFFG--SPPGYVGFENGG-QLTEAVRH 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~ 87 (287)
.+.+.||.|+||||+++.++..+......+.. +.-.......++.+.+. ......+..... .+..++..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 29 RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999987544332221 11000000111211111 111111111111 12333433
Q ss_pred CCcEEEEEcCcc-cccHHHHHHHHHhhcC
Q 047225 88 RPHSVILFDEIE-KAHRDVLNVMLQLLDD 115 (287)
Q Consensus 88 ~~~~il~iDeid-~~~~~~~~~L~~~l~~ 115 (287)
.+ .++++||-. .+++.....+.+++.+
T Consensus 109 ~p-~~lllDEPt~~LD~~~~~~l~~~l~~ 136 (166)
T cd03223 109 KP-KFVFLDEATSALDEESEDRLYQLLKE 136 (166)
T ss_pred CC-CEEEEECCccccCHHHHHHHHHHHHH
Confidence 33 799999977 6788888888888875
No 329
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.75 E-value=0.00059 Score=70.07 Aligned_cols=26 Identities=31% Similarity=0.380 Sum_probs=23.1
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhc
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
...+.++|++|+||||+|+++++.+.
T Consensus 207 ~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 207 VRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 34799999999999999999988873
No 330
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.74 E-value=9.8e-05 Score=57.85 Aligned_cols=94 Identities=20% Similarity=0.315 Sum_probs=57.9
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccc---------hhhHHHHH
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFEN---------GGQLTEAV 85 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 85 (287)
+|. .++|+|.+|+||||+|.+|.+.+...+...+..|......... . ..|+.. ...+.+.+
T Consensus 22 ~~~-viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~--~-------dLgFs~edR~eniRRvaevAkll 91 (197)
T COG0529 22 KGA-VIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN--R-------DLGFSREDRIENIRRVAEVAKLL 91 (197)
T ss_pred CCe-EEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc--C-------CCCCChHHHHHHHHHHHHHHHHH
Confidence 444 7999999999999999999999988888888887765443211 0 112221 11234444
Q ss_pred HhCCcEEEEEcCcccccHHHHHHHHHhhcCceeec
Q 047225 86 RHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTD 120 (287)
Q Consensus 86 ~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~ 120 (287)
...+ +++|=-+=-...+..+..++++..+.+..
T Consensus 92 ~daG--~iviva~ISP~r~~R~~aR~~~~~~~FiE 124 (197)
T COG0529 92 ADAG--LIVIVAFISPYREDRQMARELLGEGEFIE 124 (197)
T ss_pred HHCC--eEEEEEeeCccHHHHHHHHHHhCcCceEE
Confidence 4443 44443333333455566677777765554
No 331
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=0.00023 Score=55.74 Aligned_cols=95 Identities=22% Similarity=0.282 Sum_probs=52.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc--cchhhhhCCCCCCCcccchh-hHHHHHHhCCcEEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK--HTVSKFFGSPPGYVGFENGG-QLTEAVRHRPHSVILF 95 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~il~i 95 (287)
.+.|.||+|+|||++.+.++..+......+ +++....... ......++......+..... .+..++... ..++++
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~-~~i~il 104 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPTSGEI-LIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLN-PDLLLL 104 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence 689999999999999999998875433333 3333222110 00000010000011111111 123333333 379999
Q ss_pred cCcc-cccHHHHHHHHHhhcC
Q 047225 96 DEIE-KAHRDVLNVMLQLLDD 115 (287)
Q Consensus 96 Deid-~~~~~~~~~L~~~l~~ 115 (287)
||.. .++......+.+++..
T Consensus 105 DEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 105 DEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred eCCCcCCCHHHHHHHHHHHHH
Confidence 9988 6777777777777663
No 332
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.70 E-value=0.00031 Score=62.53 Aligned_cols=84 Identities=29% Similarity=0.445 Sum_probs=46.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC-C-CceEEeccccccc--c---cchhhhhCCCCCCCcccchhhHHHHHH-hCC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS-K-EAMVRIDMSEYME--K---HTVSKFFGSPPGYVGFENGGQLTEAVR-HRP 89 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~-~-~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 89 (287)
.+++|+||+|+||||++..|+..+... + ..+..+++..+.. . ......++-+... ......+...+. ...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~--~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA--VKDGGDLQLALAELRN 215 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe--cCCcccHHHHHHHhcC
Confidence 379999999999999999999876322 2 3455555554421 1 1112233322111 111122333222 234
Q ss_pred cEEEEEcCcccccH
Q 047225 90 HSVILFDEIEKAHR 103 (287)
Q Consensus 90 ~~il~iDeid~~~~ 103 (287)
..+++||.....+.
T Consensus 216 ~DlVLIDTaG~~~~ 229 (374)
T PRK14722 216 KHMVLIDTIGMSQR 229 (374)
T ss_pred CCEEEEcCCCCCcc
Confidence 46999999987653
No 333
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.69 E-value=0.00035 Score=65.36 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=30.4
Q ss_pred cEEEEEcCcc-cccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecC
Q 047225 90 HSVILFDEIE-KAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNI 139 (287)
Q Consensus 90 ~~il~iDeid-~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~ 139 (287)
+.++|+||.- .++++....+.+++++. ++++.+|-.+..
T Consensus 534 P~~v~LDEATsALDe~~e~~l~q~l~~~-----------lp~~tvISV~Hr 573 (604)
T COG4178 534 PKWVFLDEATSALDEETEDRLYQLLKEE-----------LPDATVISVGHR 573 (604)
T ss_pred CCEEEEecchhccChHHHHHHHHHHHhh-----------CCCCEEEEeccc
Confidence 3899999987 67999999999999862 345667776654
No 334
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=0.00025 Score=58.81 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=23.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.+.||+||||||+.+.+|....+.
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 58999999999999999999987443
No 335
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.68 E-value=0.00021 Score=56.86 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=32.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM 57 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 57 (287)
.+++.|+||+|||+++..++..+...+..+..+++..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 478999999999999999999886556677778876553
No 336
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.68 E-value=0.00049 Score=65.09 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=59.3
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEe-cccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEE
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRI-DMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILF 95 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 95 (287)
.+.++++||+|+||||+..++.+.+......++++ |..++.-..-.+..+ ....|.+....+...++..| .++++
T Consensus 316 ~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q~~v---~~~~g~~~~~~l~~~LR~dP-DvI~v 391 (564)
T TIGR02538 316 QGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQVNV---NPKIGLTFAAALRSFLRQDP-DIIMV 391 (564)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceEEEe---ccccCCCHHHHHHHHhccCC-CEEEe
Confidence 35799999999999999988877775444455544 333333211101000 11223444445666777666 89999
Q ss_pred cCcccccHHHHHHHHHhhcCce
Q 047225 96 DEIEKAHRDVLNVMLQLLDDGR 117 (287)
Q Consensus 96 Deid~~~~~~~~~L~~~l~~~~ 117 (287)
.|+. +.+......+...+|.
T Consensus 392 GEiR--d~eta~~a~~aa~tGH 411 (564)
T TIGR02538 392 GEIR--DLETAEIAIKAAQTGH 411 (564)
T ss_pred CCCC--CHHHHHHHHHHHHcCC
Confidence 9998 6666666677777664
No 337
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.67 E-value=6e-05 Score=59.86 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMV 49 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 49 (287)
.++|+|+||||||++++.|++.+ +.+++
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l---~~~~~ 33 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRL---GYDFI 33 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEE
Confidence 69999999999999999999998 44444
No 338
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.66 E-value=0.00019 Score=63.97 Aligned_cols=96 Identities=19% Similarity=0.225 Sum_probs=51.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh--cCCCCceEEecccccccccchhhhhCCCC--CCC--cccchhhHHHHHH-----h
Q 047225 19 SFLFTGPTGVGKTELANALAFEY--FGSKEAMVRIDMSEYMEKHTVSKFFGSPP--GYV--GFENGGQLTEAVR-----H 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~-----~ 87 (287)
.+++.|.||||||.++-.++..+ ...+.....+....... ..+...+.... ... .......+...+. .
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~-~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 81 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLR-NKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEK 81 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHH-HHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccC
Confidence 68999999999999999999988 33333333333222111 11122221111 000 0011112222222 2
Q ss_pred CCcEEEEEcCcccccHH--------HHHHHHHhhcC
Q 047225 88 RPHSVILFDEIEKAHRD--------VLNVMLQLLDD 115 (287)
Q Consensus 88 ~~~~il~iDeid~~~~~--------~~~~L~~~l~~ 115 (287)
....+|++||++++... ..+.|..++..
T Consensus 82 ~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 82 NKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred CcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 34679999999998772 23556666665
No 339
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=97.65 E-value=0.00032 Score=65.81 Aligned_cols=139 Identities=18% Similarity=0.323 Sum_probs=79.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhC----CCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFG----SPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
|++=.||.|||||++=+.+.-.. ..++.++.+ ...+|- ...|.+| .+++++
T Consensus 218 Nl~ELgPrgTGKS~~y~eiSp~~-------~liSGG~~T----~A~LFyn~~~~~~GlVg--------------~~D~Va 272 (675)
T TIGR02653 218 NLCELGPRGTGKSHVYKECSPNS-------ILMSGGQTT----VANLFYNMSTRQIGLVG--------------MWDVVA 272 (675)
T ss_pred ceEEECCCCCCcceeeeccCCce-------EEEECCccc----hhHeeEEcCCCceeEEe--------------eccEEE
Confidence 68999999999999877554221 222222221 122221 1111121 346999
Q ss_pred EcCcccc---cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCch--hhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 95 FDEIEKA---HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDS--VIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 95 iDeid~~---~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
|||+... +++.+..+...|+.|.+..+. ..+ ..++-+++-.|.... ...+ ..--+..+++... -..
T Consensus 273 FDEva~i~f~d~d~v~imK~YM~sG~FsRG~-~~~-~a~as~vfvGNi~~~v~~~~k-~~~lf~~lP~~~~------~Ds 343 (675)
T TIGR02653 273 FDEVAGIEFKDKDGVQIMKDYMASGSFARGK-ESI-EGKASIVFVGNINQSVETLVK-TSHLFAPFPEAMR------IDT 343 (675)
T ss_pred EeeccccccCCHHHHHHHHHHhhcCcccccc-ccc-ccceeEEEEcccCCchHHHhh-cccccccCChhhc------ccc
Confidence 9999854 667888999999999887644 222 256677777776522 1101 0000222333321 146
Q ss_pred hHHhccCce---EEeCCCCHHHHHH
Q 047225 170 EFLNRIDEV---IVFRQLNKMQLME 191 (287)
Q Consensus 170 ~l~~r~~~~---i~~~~~~~~~~~~ 191 (287)
+|++||+.. ..+|-++.+.+.+
T Consensus 344 AflDRiH~yiPGWeiPk~~~e~~t~ 368 (675)
T TIGR02653 344 AFFDRFHYYIPGWEIPKMRPEYFTN 368 (675)
T ss_pred hHHHHhhccCcCCcCccCCHHHccc
Confidence 899999644 6788887764433
No 340
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.65 E-value=7.5e-05 Score=64.01 Aligned_cols=92 Identities=29% Similarity=0.376 Sum_probs=52.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEec-ccccccccch-hhhhCCCCCCCcccchhhHHHHHHhCCcEEEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRID-MSEYMEKHTV-SKFFGSPPGYVGFENGGQLTEAVRHRPHSVILF 95 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 95 (287)
+++++.||+|+||||+.+++...+......++++. ..++.-.... ..+... ....+....+...++..| +++++
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~---~~~~~~~~~l~~~LR~~p-D~iii 203 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTR---RDEISYEDLLKSALRQDP-DVIII 203 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEE---TTTBSHHHHHHHHTTS---SEEEE
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEee---cCcccHHHHHHHHhcCCC-Ccccc
Confidence 47999999999999999999998866535555543 2332211100 000000 011222233445555554 79999
Q ss_pred cCcccccHHHHHHHHHhhcCc
Q 047225 96 DEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 96 Deid~~~~~~~~~L~~~l~~~ 116 (287)
+|+... +.... .+.++.|
T Consensus 204 gEiR~~--e~~~~-~~a~~tG 221 (270)
T PF00437_consen 204 GEIRDP--EAAEA-IQAANTG 221 (270)
T ss_dssp SCE-SC--HHHHH-HHHHHTT
T ss_pred cccCCH--hHHHH-HHhhccC
Confidence 999954 55555 7777765
No 341
>PRK10867 signal recognition particle protein; Provisional
Probab=97.64 E-value=0.00038 Score=63.32 Aligned_cols=97 Identities=19% Similarity=0.289 Sum_probs=56.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC-CCceEEeccccccccc--ch---hhhhCCC--CCCCcccchhhH---HHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS-KEAMVRIDMSEYMEKH--TV---SKFFGSP--PGYVGFENGGQL---TEAVR 86 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~--~~---~~~~~~~--~~~~~~~~~~~~---~~~~~ 86 (287)
..++++|++|+||||++..||..+... +..+..+++..+.... .+ ....+-+ ....+.+..... .+...
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~a~ 180 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEEAK 180 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHHHH
Confidence 379999999999999999999887555 5677777777655321 11 1111111 000111111112 22334
Q ss_pred hCCcEEEEEcCccccc--HHHHHHHHHhhc
Q 047225 87 HRPHSVILFDEIEKAH--RDVLNVMLQLLD 114 (287)
Q Consensus 87 ~~~~~il~iDeid~~~--~~~~~~L~~~l~ 114 (287)
...+.++++|=.-+.+ ......|..+.+
T Consensus 181 ~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~ 210 (433)
T PRK10867 181 ENGYDVVIVDTAGRLHIDEELMDELKAIKA 210 (433)
T ss_pred hcCCCEEEEeCCCCcccCHHHHHHHHHHHH
Confidence 4556799999998774 445555544443
No 342
>PRK10436 hypothetical protein; Provisional
Probab=97.63 E-value=0.00028 Score=64.77 Aligned_cols=96 Identities=22% Similarity=0.273 Sum_probs=57.4
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEe-cccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRI-DMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
|.+.++++||+|+||||+..++...+......++++ |..++.-..-.+.-+ ....|.+....+...++..| ++++
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q~~v---~~~~g~~f~~~lr~~LR~dP-DvI~ 292 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQTQI---HPKAGLTFQRVLRALLRQDP-DVIM 292 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcceEee---CCccCcCHHHHHHHHhcCCC-CEEE
Confidence 345799999999999999888777774444455444 233332211001001 11123334445666676666 8999
Q ss_pred EcCcccccHHHHHHHHHhhcCce
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDGR 117 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~~ 117 (287)
+.|+- +.+......+...+|.
T Consensus 293 vGEIR--D~eta~~al~AA~TGH 313 (462)
T PRK10436 293 VGEIR--DGETAEIAIKAAQTGH 313 (462)
T ss_pred ECCCC--CHHHHHHHHHHHHcCC
Confidence 99998 4555555566666654
No 343
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.63 E-value=0.00031 Score=56.42 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=62.3
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc--cc--cccccchhhh-------hCCCCCCCcccc--------
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM--SE--YMEKHTVSKF-------FGSPPGYVGFEN-------- 77 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~--~~--~~~~~~~~~~-------~~~~~~~~~~~~-------- 77 (287)
.+.+.++|++|.|||++|-.++-+..+.+.++..+.. +. +.+...+..+ +|..........
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~ 101 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAAR 101 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHH
Confidence 3579999999999999999999887666655544433 22 1111112111 011001110000
Q ss_pred --hhhHHHHHHhCCcEEEEEcCcccccH-H--HHHHHHHhhcCceeecCCCceeeccceEEEEeecCC
Q 047225 78 --GGQLTEAVRHRPHSVILFDEIEKAHR-D--VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIG 140 (287)
Q Consensus 78 --~~~~~~~~~~~~~~il~iDeid~~~~-~--~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~ 140 (287)
-....+.+..+.+++|++||+..+-. + ..+.+..+++.+. ++.-+|+|....
T Consensus 102 ~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp-----------~~~evVlTGR~~ 158 (191)
T PRK05986 102 EGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARP-----------GMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCC-----------CCCEEEEECCCC
Confidence 01123455567789999999985422 1 2234555665432 234588888644
No 344
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.62 E-value=0.00036 Score=54.54 Aligned_cols=111 Identities=18% Similarity=0.218 Sum_probs=60.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc--c--ccccccchhhh-------hCCCCCCCcccc----------
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM--S--EYMEKHTVSKF-------FGSPPGYVGFEN---------- 77 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~--~--~~~~~~~~~~~-------~~~~~~~~~~~~---------- 77 (287)
-+.+++++|.|||++|-.++-+..+.+.....+.. + .+.+...+..+ +|..........
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 47888899999999999998887665655544322 2 11111111111 010000000000
Q ss_pred hhhHHHHHHhCCcEEEEEcCcccc-cHH--HHHHHHHhhcCceeecCCCceeeccceEEEEeecCC
Q 047225 78 GGQLTEAVRHRPHSVILFDEIEKA-HRD--VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIG 140 (287)
Q Consensus 78 ~~~~~~~~~~~~~~il~iDeid~~-~~~--~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~ 140 (287)
-....+.+....+++|++||+..+ +.+ ..+.+.++++.+. ++.-+|+|+...
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp-----------~~~evIlTGr~~ 138 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKP-----------EDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCC-----------CCCEEEEECCCC
Confidence 011234555577889999999965 222 2345677777542 233588888643
No 345
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.61 E-value=0.00051 Score=61.44 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=52.1
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccccc-chhhhhCCCCCC---CcccchhhHHHHHHhCCcEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKH-TVSKFFGSPPGY---VGFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~il 93 (287)
..+++.|+||+|||+++..++..+...+.+.++++..+..... .....++..... ........+.+.+......++
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~~lV 162 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKPDLV 162 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCCcEE
Confidence 3699999999999999999998875555677777765432211 001122211110 111223456666666667899
Q ss_pred EEcCcccc
Q 047225 94 LFDEIEKA 101 (287)
Q Consensus 94 ~iDeid~~ 101 (287)
+||++..+
T Consensus 163 VIDSIq~l 170 (372)
T cd01121 163 IIDSIQTV 170 (372)
T ss_pred EEcchHHh
Confidence 99999755
No 346
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.60 E-value=0.00013 Score=60.96 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=44.6
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCcc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIE 99 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid 99 (287)
+++.|+||+|||++++.+.... .......-.+..+.... .......+..................++|||+.
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~--~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~s~~~~~~~~~~~~~liiDE~~ 72 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR--LVVTVISPTIELYTEWL------PDPPSKSVRTVDSFLKALVKPKSYDTLIIDEAQ 72 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc--cccccccccceeccccc------cccCCccccEEeEhhhcccccCcCCEEEEeccc
Confidence 4689999999999999998873 00000000011111110 000111111111111111111235699999999
Q ss_pred cccHHHHHHHHHhhc
Q 047225 100 KAHRDVLNVMLQLLD 114 (287)
Q Consensus 100 ~~~~~~~~~L~~~l~ 114 (287)
.+++..+..+.....
T Consensus 73 ~~~~g~l~~l~~~~~ 87 (234)
T PF01443_consen 73 LLPPGYLLLLLSLSP 87 (234)
T ss_pred cCChHHHHHHHhhcc
Confidence 999988777655544
No 347
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.59 E-value=0.00022 Score=58.02 Aligned_cols=94 Identities=17% Similarity=0.368 Sum_probs=61.8
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
..++|.|+-|+|||+..+.|....+... ..... .......+.... ++.+||
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~~~d~-------~~~~~--------------------~kd~~~~l~~~~--iveldE 103 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEYFSDS-------INDFD--------------------DKDFLEQLQGKW--IVELDE 103 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHhccCc-------cccCC--------------------CcHHHHHHHHhH--heeHHH
Confidence 3699999999999999999965542211 00000 012333343333 899999
Q ss_pred cccccHHHHHHHHHhhcCceee--cCCC-ceeecc-ceEEEEeecCC
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVT--DGKG-QTVDLK-NTIIIMTSNIG 140 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~--~~~g-~~i~~~-~~~iI~t~n~~ 140 (287)
++.+....++.|..++...... .+.+ .....+ .++||+|+|..
T Consensus 104 l~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 104 LDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred HhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence 9999988889999998865433 2223 233344 57889999974
No 348
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.57 E-value=0.00024 Score=57.99 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=33.1
Q ss_pred CCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 12 DPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 12 ~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
.+.+|. .+.|+|++|+||||+++.|+..+...+...+.++....
T Consensus 20 ~~~~~~-~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 20 HGHKGV-VLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred cCCCCE-EEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 344555 69999999999999999999988655555566655443
No 349
>PRK03839 putative kinase; Provisional
Probab=97.57 E-value=8.1e-05 Score=59.71 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999998
No 350
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.57 E-value=0.00013 Score=48.75 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.8
Q ss_pred EEEeccCCChHHHHHHHHHHHh
Q 047225 20 FLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l 41 (287)
+++.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999987
No 351
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.57 E-value=0.00017 Score=60.90 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.++|+||+|+|||++++.+++.+...
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccc
Confidence 59999999999999999999988543
No 352
>PRK13947 shikimate kinase; Provisional
Probab=97.56 E-value=8.9e-05 Score=58.88 Aligned_cols=29 Identities=21% Similarity=0.364 Sum_probs=25.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVR 50 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~ 50 (287)
+++|+|+||||||++++.||+.+ +.+++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l---g~~~id 31 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL---SFGFID 31 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 59999999999999999999998 555543
No 353
>PRK00625 shikimate kinase; Provisional
Probab=97.56 E-value=8.9e-05 Score=59.06 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=25.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEe
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRI 51 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 51 (287)
+++|+|.||+||||+++.|++.+ +.+++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l---~~~~id~ 31 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL---SLPFFDT 31 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEEh
Confidence 59999999999999999999998 4444433
No 354
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.56 E-value=0.00041 Score=61.90 Aligned_cols=96 Identities=20% Similarity=0.266 Sum_probs=55.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcC--CCCceEEec-ccccccccchhhhhCCCCCCCcc---cchhhHHHHHHhCCcE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFG--SKEAMVRID-MSEYMEKHTVSKFFGSPPGYVGF---ENGGQLTEAVRHRPHS 91 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 91 (287)
+.++++||+|+||||+.+++...+.. ....++++. ..++.-... ...........+. .....+..+++..| +
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~-~~~~~~~q~evg~~~~~~~~~l~~aLR~~P-D 227 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSP-DDLLPPAQSQIGRDVDSFANGIRLALRRAP-K 227 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCC-ceeecccccccCCCccCHHHHHHHhhccCC-C
Confidence 46999999999999999999888742 233455442 233321110 0000000111111 11234455666655 8
Q ss_pred EEEEcCcccccHHHHHHHHHhhcCce
Q 047225 92 VILFDEIEKAHRDVLNVMLQLLDDGR 117 (287)
Q Consensus 92 il~iDeid~~~~~~~~~L~~~l~~~~ 117 (287)
++++.|+- +.+.....++..+.|.
T Consensus 228 ~I~vGEiR--d~et~~~al~aa~TGH 251 (372)
T TIGR02525 228 IIGVGEIR--DLETFQAAVLAGQSGH 251 (372)
T ss_pred EEeeCCCC--CHHHHHHHHHHHhcCC
Confidence 99999998 5566666677888763
No 355
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.54 E-value=0.0003 Score=66.59 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.0
Q ss_pred CcEEEEEcCcccccHHHHHHHHHhhcC
Q 047225 89 PHSVILFDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 89 ~~~il~iDeid~~~~~~~~~L~~~l~~ 115 (287)
+..+|+|||+..++......|++.+..
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al~~ 285 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKALPP 285 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhcCC
Confidence 457999999999999998888887764
No 356
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.54 E-value=7.5e-05 Score=57.30 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=21.0
Q ss_pred EEEeccCCChHHHHHHHHHHHh
Q 047225 20 FLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l 41 (287)
++++||||+||||+++.++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 7899999999999999999887
No 357
>PRK06696 uridine kinase; Validated
Probab=97.53 E-value=0.00012 Score=60.88 Aligned_cols=46 Identities=26% Similarity=0.415 Sum_probs=36.1
Q ss_pred CCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc
Q 047225 13 PNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK 59 (287)
Q Consensus 13 ~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 59 (287)
+++|. .|.+.|++|+||||+|+.|++.+...+.+.+.+.+.++...
T Consensus 19 ~~~~~-iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 19 LTRPL-RVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CCCce-EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 34555 69999999999999999999999655556677777776643
No 358
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.53 E-value=0.00021 Score=62.90 Aligned_cols=128 Identities=17% Similarity=0.213 Sum_probs=70.0
Q ss_pred hhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHH
Q 047225 6 ARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAV 85 (287)
Q Consensus 6 ~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (287)
+|.-++.-.+.. .++|+|||.||||..+..|.+.+. ..++.+--+. + +.-..-+
T Consensus 252 lk~~Lkg~PKKn-Clvi~GPPdTGKS~F~~SLi~Fl~---GkViSf~Ns~-S---------------------hFWLqPL 305 (432)
T PF00519_consen 252 LKQFLKGIPKKN-CLVIYGPPDTGKSMFCMSLIKFLK---GKVISFVNSK-S---------------------HFWLQPL 305 (432)
T ss_dssp HHHHHHTBTTSS-EEEEESSCCCSHHHHHHHHHHHHT---SEEE-GGGTT-S---------------------CGGGGGG
T ss_pred HHHHHhCCCccc-EEEEECCCCCchhHHHHHHHHHhC---CEEEEecCCC-C---------------------cccccch
Confidence 344444422333 599999999999999999999883 3333221110 0 1111222
Q ss_pred HhCCcEEEEEcCcccccHHHHHH-HHHhhcCceeecC--CCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 86 RHRPHSVILFDEIEKAHRDVLNV-MLQLLDDGRVTDG--KGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 86 ~~~~~~il~iDeid~~~~~~~~~-L~~~l~~~~~~~~--~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
.++. +.+|||+-..-=+..+. |+.+++...+... ....+...-..+++|||.....-.
T Consensus 306 ~d~K--i~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~----------------- 366 (432)
T PF00519_consen 306 ADAK--IALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDD----------------- 366 (432)
T ss_dssp CT-S--SEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSC-----------------
T ss_pred hcCc--EEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcch-----------------
Confidence 2223 89999998766666654 6777876554432 233333333468899998654321
Q ss_pred HHhcCChhHHhccCceEEeCC
Q 047225 163 LRRRFRPEFLNRIDEVIVFRQ 183 (287)
Q Consensus 163 ~~~~~~~~l~~r~~~~i~~~~ 183 (287)
.+ .-|.+|+ ..+.|+.
T Consensus 367 ---~~-~YLhSRi-~~f~F~n 382 (432)
T PF00519_consen 367 ---RW-KYLHSRI-TCFEFPN 382 (432)
T ss_dssp ---CC-HHHCTTE-EEEE--S
T ss_pred ---hh-hhhhheE-EEEEcCC
Confidence 12 3467898 7777753
No 359
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.53 E-value=0.00032 Score=68.20 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=52.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCC--CceEEeccccccc----------ccchhhhhCCCCCCCcccchhhHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSK--EAMVRIDMSEYME----------KHTVSKFFGSPPGYVGFENGGQLTEAVR 86 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (287)
.+++.|+||||||++++.+.+.+...+ ..+...-.+.-.. ..++..+++..... .......
T Consensus 340 ~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~-------~~~~~~~ 412 (720)
T TIGR01448 340 VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDT-------FRHNHLE 412 (720)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCc-------cchhhhh
Confidence 699999999999999999988774433 3333222221110 01222222211110 0000001
Q ss_pred -hCCcEEEEEcCcccccHHHHHHHHHhhcC
Q 047225 87 -HRPHSVILFDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 87 -~~~~~il~iDeid~~~~~~~~~L~~~l~~ 115 (287)
.....+|++||+..++......|++.+..
T Consensus 413 ~~~~~~llIvDEaSMvd~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 413 DPIDCDLLIVDESSMMDTWLALSLLAALPD 442 (720)
T ss_pred ccccCCEEEEeccccCCHHHHHHHHHhCCC
Confidence 12346999999999999998888887654
No 360
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.53 E-value=0.00021 Score=57.76 Aligned_cols=93 Identities=30% Similarity=0.428 Sum_probs=49.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc-ccccccc-chhhhhCCCC---CCCcccchhhHHHHHHhCCcEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM-SEYMEKH-TVSKFFGSPP---GYVGFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~il 93 (287)
+++|.||+|+||||+.+++...+... ...+.+.. .+..... ....+..... .....+....+...++..+ .++
T Consensus 27 ~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~p-d~i 104 (186)
T cd01130 27 NILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRP-DRI 104 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCC-CEE
Confidence 69999999999999999999887543 33444322 1211100 0000100000 0111112222333444444 899
Q ss_pred EEcCcccccHHHHHHHHHhhcCc
Q 047225 94 LFDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 94 ~iDeid~~~~~~~~~L~~~l~~~ 116 (287)
+++|+-. ++... +++.+..|
T Consensus 105 ~igEir~--~ea~~-~~~a~~tG 124 (186)
T cd01130 105 IVGEVRG--GEALD-LLQAMNTG 124 (186)
T ss_pred EEEccCc--HHHHH-HHHHHhcC
Confidence 9999985 34444 45556654
No 361
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.52 E-value=0.00024 Score=58.41 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=31.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
.+.++||||+|||+++..++......+...+++++..
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 6999999999999999999887755567888888865
No 362
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.51 E-value=0.00077 Score=61.29 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=55.6
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhc-CCCCceEEecccccccc--c---chhhhhCCCCCCCc--ccch---hhHHH
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYF-GSKEAMVRIDMSEYMEK--H---TVSKFFGSPPGYVG--FENG---GQLTE 83 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~--~~~~---~~~~~ 83 (287)
+|. .++++|++|+||||++..+|..+. ..+..+..++|..+... . ......+.+.-..+ .... ....+
T Consensus 98 ~p~-vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPT-VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCE-EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 344 799999999999999999998874 34667777888765532 1 11111221111111 1111 11222
Q ss_pred HHHhCCcEEEEEcCccccc--HHHHHHHHHh
Q 047225 84 AVRHRPHSVILFDEIEKAH--RDVLNVMLQL 112 (287)
Q Consensus 84 ~~~~~~~~il~iDeid~~~--~~~~~~L~~~ 112 (287)
.+....+.++++|-..+.+ ......|..+
T Consensus 177 ~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i 207 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQIDEELMEELAAI 207 (428)
T ss_pred HHHhcCCCEEEEeCCCccccCHHHHHHHHHH
Confidence 3334556799999988764 4444444443
No 363
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.50 E-value=0.0026 Score=55.57 Aligned_cols=123 Identities=19% Similarity=0.218 Sum_probs=68.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
.-++|+|+.|+|||++.+.|...++.... ....+... .. +.. .. +......+..++++||
T Consensus 77 ~~~~l~G~g~nGKStl~~~l~~l~G~~~~---~~~~~~~~-----~~-~~~----------~~-f~~a~l~gk~l~~~~E 136 (304)
T TIGR01613 77 KLFFLYGNGGNGKSTFQNLLSNLLGDYAT---TAVASLKM-----NE-FQE----------HR-FGLARLEGKRAVIGDE 136 (304)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhChhhc---cCCcchhh-----hh-ccC----------CC-chhhhhcCCEEEEecC
Confidence 35999999999999999999877733221 11111000 00 000 01 1111122335899999
Q ss_pred cccccHHHHHHHHHhhcCceeecCC--Cceeec-cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGK--GQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNR 174 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~--g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r 174 (287)
++.-.....+.|..+.....+.... ...+.+ +.+.+|+++|..+..- ..+.++.+|
T Consensus 137 ~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~---------------------~~~~a~~RR 195 (304)
T TIGR01613 137 VQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR---------------------GFDGGIKRR 195 (304)
T ss_pred CCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC---------------------CCChhheee
Confidence 9854433445666666544444331 233333 3678888998754321 124678889
Q ss_pred cCceEEeC
Q 047225 175 IDEVIVFR 182 (287)
Q Consensus 175 ~~~~i~~~ 182 (287)
+ .+|+|+
T Consensus 196 ~-~vi~f~ 202 (304)
T TIGR01613 196 L-RIIPFT 202 (304)
T ss_pred E-EEEecc
Confidence 8 777764
No 364
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.49 E-value=0.0016 Score=51.90 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=51.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc--cchhh---hhCCCCCC----------Ccccchh-hHH
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK--HTVSK---FFGSPPGY----------VGFENGG-QLT 82 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~----------~~~~~~~-~~~ 82 (287)
.+.|.||.|+||||+.+.|+..+.+....+. ++..+.... ..... .....+.. .+..... .+.
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~qrv~la 108 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLRPTSGRVR-LDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQRQRLGLA 108 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEE-ECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHHHHHHHH
Confidence 5899999999999999999998755444332 222111100 00000 00111110 0001011 122
Q ss_pred HHHHhCCcEEEEEcCcc-cccHHHHHHHHHhhcC
Q 047225 83 EAVRHRPHSVILFDEIE-KAHRDVLNVMLQLLDD 115 (287)
Q Consensus 83 ~~~~~~~~~il~iDeid-~~~~~~~~~L~~~l~~ 115 (287)
.++.. +..++++||-. .+++.....+.+++..
T Consensus 109 ~al~~-~p~~lllDEPt~~LD~~~~~~l~~~l~~ 141 (173)
T cd03246 109 RALYG-NPRILVLDEPNSHLDVEGERALNQAIAA 141 (173)
T ss_pred HHHhc-CCCEEEEECCccccCHHHHHHHHHHHHH
Confidence 33333 33799999976 6788877777777753
No 365
>PF13479 AAA_24: AAA domain
Probab=97.49 E-value=0.00027 Score=58.41 Aligned_cols=83 Identities=22% Similarity=0.230 Sum_probs=43.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHH--HhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAV--RHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~il~iD 96 (287)
.++++|+||+|||+++..+- ..+.+++..-........ -+.......+..-....+.+ ...++.+|+||
T Consensus 5 ~~lIyG~~G~GKTt~a~~~~--------k~l~id~E~g~~~~~~~~-~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVID 75 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASLP--------KPLFIDTENGSDSLKFLD-DGDVIPITSWEDFLEALDELEEDEADYDTIVID 75 (213)
T ss_pred EEEEECCCCCCHHHHHHhCC--------CeEEEEeCCCccchhhhc-CCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEE
Confidence 59999999999999998882 233444432211100000 00000001111111222222 22567899999
Q ss_pred CcccccHHHHHHHH
Q 047225 97 EIEKAHRDVLNVML 110 (287)
Q Consensus 97 eid~~~~~~~~~L~ 110 (287)
.++.+.......+.
T Consensus 76 sis~~~~~~~~~~~ 89 (213)
T PF13479_consen 76 SISWLEDMCLEYIC 89 (213)
T ss_pred CHHHHHHHHHHHHh
Confidence 99988665544444
No 366
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.49 E-value=0.00096 Score=53.85 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||+|+|||++++.|.+..
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 69999999999999999998875
No 367
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.49 E-value=9.3e-05 Score=55.50 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.8
Q ss_pred EEEeccCCChHHHHHHHHHHHh
Q 047225 20 FLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l 41 (287)
|+|.|+|||||||+++.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999996
No 368
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.49 E-value=0.00011 Score=57.10 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
+++|+|+||+|||++++.|++.+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999988
No 369
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.49 E-value=0.00086 Score=61.66 Aligned_cols=86 Identities=24% Similarity=0.326 Sum_probs=49.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC-C-CceEEecccccccc-----cchhhhhCCCCCCCcccchhhHHHHHHhCCc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS-K-EAMVRIDMSEYMEK-----HTVSKFFGSPPGYVGFENGGQLTEAVRHRPH 90 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~-~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (287)
..++|+||+|+||||++..|+..+... + ..+..+++..+.-. ......+|.+. ...................
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv-~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV-HAVKDAADLRLALSELRNK 335 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe-eccCCchhHHHHHHhccCC
Confidence 379999999999999999999877322 2 24555555544211 11223333211 1111222223333444455
Q ss_pred EEEEEcCcccccHH
Q 047225 91 SVILFDEIEKAHRD 104 (287)
Q Consensus 91 ~il~iDeid~~~~~ 104 (287)
.+++||...+.+.+
T Consensus 336 d~VLIDTaGr~~~d 349 (484)
T PRK06995 336 HIVLIDTIGMSQRD 349 (484)
T ss_pred CeEEeCCCCcChhh
Confidence 69999998876654
No 370
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.48 E-value=0.00028 Score=54.86 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=27.2
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
++++|+||+|||++++.|+..+...+...+.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 7899999999999999999998544445555553
No 371
>PRK14532 adenylate kinase; Provisional
Probab=97.48 E-value=0.00013 Score=59.04 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
++++.||||+||||+++.|++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 372
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.48 E-value=0.00039 Score=55.48 Aligned_cols=37 Identities=32% Similarity=0.384 Sum_probs=30.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
.++|.|+||+||||+++.|+..+...+..+..++...
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 6999999999999999999999865555566666543
No 373
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.47 E-value=0.00065 Score=60.48 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=55.7
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhcC---CCCceEEe-cccccccccchh---hhhCC-CCCCCcccchhhHHHHHHhC
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYFG---SKEAMVRI-DMSEYMEKHTVS---KFFGS-PPGYVGFENGGQLTEAVRHR 88 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~~---~~~~~~~~-~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~ 88 (287)
.+.++++||+|+||||+++++...+.. .+..++++ +..++.-.. .. ..+.. ..+.........+...++..
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~-~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~ 212 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDE-IETISASVCQSEIPRHLNNFAAGVRNALRRK 212 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccc-cccccceeeeeeccccccCHHHHHHHHhccC
Confidence 357999999999999999999988732 22334433 222222110 00 00000 00001112223455666665
Q ss_pred CcEEEEEcCcccccHHHHHHHHHhhcCce
Q 047225 89 PHSVILFDEIEKAHRDVLNVMLQLLDDGR 117 (287)
Q Consensus 89 ~~~il~iDeid~~~~~~~~~L~~~l~~~~ 117 (287)
| .++++.|+. +.+.....++....|.
T Consensus 213 P-d~i~vGEiR--d~et~~~al~aa~tGh 238 (358)
T TIGR02524 213 P-HAILVGEAR--DAETISAALEAALTGH 238 (358)
T ss_pred C-CEEeeeeeC--CHHHHHHHHHHHHcCC
Confidence 5 799999977 6677777777777763
No 374
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.47 E-value=0.00063 Score=51.15 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=20.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
++++.||+|+|||+++-.++....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 589999999999998888777764
No 375
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.00053 Score=61.68 Aligned_cols=114 Identities=19% Similarity=0.296 Sum_probs=63.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh-cCCCCceEEeccccccccc--ch---hhhhCCCCCCCcccchhhHHHHHHhCCcEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEY-FGSKEAMVRIDMSEYMEKH--TV---SKFFGSPPGYVGFENGGQLTEAVRHRPHSV 92 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 92 (287)
.++|+||+|+||||++..||..+ ...+..+..+++..+.... .+ ....+-+ .........+.+.+......+
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp--~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMP--FYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCC--eeehHHHHHHHHHHHhCCCCE
Confidence 69999999999999999999765 3334556666665544321 11 1111111 111111234455555556679
Q ss_pred EEEcCcccc--cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCc
Q 047225 93 ILFDEIEKA--HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGD 141 (287)
Q Consensus 93 l~iDeid~~--~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~ 141 (287)
++||=..+. +......|..++..-... ......+++.++.+.
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~-------~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEK-------DSVENLLVLSSTSSY 346 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCC-------CCCeEEEEEeCCCCH
Confidence 999966554 345666666666431000 012346777776654
No 376
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.46 E-value=0.0003 Score=60.63 Aligned_cols=38 Identities=32% Similarity=0.481 Sum_probs=29.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC--CCceEEeccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS--KEAMVRIDMSEY 56 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~ 56 (287)
.++|+||+|+||||++..|+..+... +..+..+++..+
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 79999999999999999999887433 256666666554
No 377
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.45 E-value=0.00055 Score=54.75 Aligned_cols=87 Identities=18% Similarity=0.112 Sum_probs=49.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchh-hHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGG-QLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~il~iDe 97 (287)
.+.|.||.|+||||+.+.++..+.+....+. ++..... ... ......+..... .+..++...+ .++++||
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~i~---~~~----q~~~LSgGq~qrv~laral~~~p-~lllLDE 97 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNGDNDE-WDGITPV---YKP----QYIDLSGGELQRVAIAAALLRNA-TFYLFDE 97 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCCcEEE-ECCEEEE---EEc----ccCCCCHHHHHHHHHHHHHhcCC-CEEEEEC
Confidence 6999999999999999999988755444432 2211100 000 000011111111 2333444434 7999999
Q ss_pred cc-cccHHHHHHHHHhhc
Q 047225 98 IE-KAHRDVLNVMLQLLD 114 (287)
Q Consensus 98 id-~~~~~~~~~L~~~l~ 114 (287)
-. .+++.....+.+++.
T Consensus 98 Pts~LD~~~~~~l~~~l~ 115 (177)
T cd03222 98 PSAYLDIEQRLNAARAIR 115 (177)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 76 677777666666554
No 378
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.44 E-value=0.00023 Score=56.89 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=27.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEec
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRID 52 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 52 (287)
.++|.|++|+||||+++.+++.+.......+.++
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 6999999999999999999999854334444443
No 379
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.44 E-value=0.00056 Score=66.77 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=52.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHH----HhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAV----RHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~ 94 (287)
.++|.|+||||||++++.+...+...+..+..+-.+.... ..+....|.. ..+....+.... ...+..+|+
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa-~~L~~~~g~~----a~Ti~~~~~~~~~~~~~~~~~~llI 444 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAA-EGLQAESGIE----SRTLASLEYAWANGRDLLSDKDVLV 444 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHH-HHHHhccCCc----eeeHHHHHhhhccCcccCCCCcEEE
Confidence 5899999999999999999887754444444333322111 1111111111 111111111110 112457999
Q ss_pred EcCcccccHHHHHHHHHhhc
Q 047225 95 FDEIEKAHRDVLNVMLQLLD 114 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~ 114 (287)
+||+..++......|+....
T Consensus 445 vDEasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 445 IDEAGMVGSRQMARVLKEAE 464 (744)
T ss_pred EECcccCCHHHHHHHHHHHH
Confidence 99999999988887777554
No 380
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.44 E-value=0.00097 Score=55.73 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=27.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
.+++.||+|||||+++..++......+....+++..+
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~ 62 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQL 62 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 6999999999999997555554434456667776544
No 381
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.43 E-value=0.00013 Score=58.20 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 69999999999999999999987
No 382
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.43 E-value=0.00015 Score=58.28 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=21.1
Q ss_pred EEEeccCCChHHHHHHHHHHHh
Q 047225 20 FLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l 41 (287)
++++||||+||||+++.|++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999988
No 383
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.43 E-value=0.00065 Score=56.90 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=30.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
.++++|+||+|||+++..++......+.+..+++..+.
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 69999999999999999997665445677777777543
No 384
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.43 E-value=0.00053 Score=60.07 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=31.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
..++|+||+|+||||++..||..+...+..+..+++..+
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 479999999999999999999998666666666666543
No 385
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.43 E-value=0.0022 Score=51.30 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=52.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc-cchhhhh---CCCC------------C-CCcccchh-h
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK-HTVSKFF---GSPP------------G-YVGFENGG-Q 80 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~------------~-~~~~~~~~-~ 80 (287)
.+.+.||+|+||||+++.|+.........+ .++....... ......+ ...+ . ..+..... .
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~ 108 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDLKPQQGEI-TLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA 108 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHH
Confidence 689999999999999999999875544433 2332211100 0000000 0000 0 00111111 1
Q ss_pred HHHHHHhCCcEEEEEcCcc-cccHHHHHHHHHhhcC
Q 047225 81 LTEAVRHRPHSVILFDEIE-KAHRDVLNVMLQLLDD 115 (287)
Q Consensus 81 ~~~~~~~~~~~il~iDeid-~~~~~~~~~L~~~l~~ 115 (287)
+..++...+ .++++||-. .+++.....+.+++.+
T Consensus 109 laral~~~p-~~lllDEP~~~LD~~~~~~l~~~l~~ 143 (178)
T cd03247 109 LARILLQDA-PIVLLDEPTVGLDPITERQLLSLIFE 143 (178)
T ss_pred HHHHHhcCC-CEEEEECCcccCCHHHHHHHHHHHHH
Confidence 233333333 799999976 6788888888777764
No 386
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.42 E-value=0.0079 Score=54.29 Aligned_cols=144 Identities=21% Similarity=0.215 Sum_probs=80.2
Q ss_pred EEEEEcCcccc---cH-----HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 91 SVILFDEIEKA---HR-----DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 91 ~il~iDeid~~---~~-----~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
-+|+|||++.+ +. ...+.|++++++-. .| .+++..+++++.|.--.-.+.....|..+.+-+...
T Consensus 241 LlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~----~G---~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~ 313 (416)
T PF10923_consen 241 LLILLDELENLYKLRNDQAREKNYEALRQLIDDID----QG---RAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEE 313 (416)
T ss_pred eEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHh----cC---CCCceEEEEeeCHHHhhCccccccccHHHHHHHhcc
Confidence 59999999954 22 24566777776410 11 134667888876632211011111244444433322
Q ss_pred HHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCC--chhHHHHHH
Q 047225 163 LRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYG--ARPLRRAIG 240 (287)
Q Consensus 163 ~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~--~r~l~~~i~ 240 (287)
... .+.+.+.....|.++|++.+++..++.+...-+.... +....++++.+..++......-.+ ....|..+.
T Consensus 314 ~~~--~~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~---~~~~~v~d~~l~~~~~~~~~r~G~~~~~tPR~~ik 388 (416)
T PF10923_consen 314 FFA--DDGFDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAY---GYESRVDDEELKAFAQHVAGRLGGDVFVTPREFIK 388 (416)
T ss_pred ccc--cccccCccCceecCCCCCHHHHHHHHHHHHHHHHhhC---CCCCCCCHHHHHHHHHHHHhccCcccccCHHHHHH
Confidence 100 2334444457799999999999988877665544443 334689999999998765443111 123355555
Q ss_pred HHHHHHH
Q 047225 241 RLLEDNL 247 (287)
Q Consensus 241 ~~~~~~~ 247 (287)
+.+ ..|
T Consensus 389 ~fv-~~L 394 (416)
T PF10923_consen 389 DFV-DVL 394 (416)
T ss_pred HHH-HHH
Confidence 554 344
No 387
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.42 E-value=0.0023 Score=51.99 Aligned_cols=29 Identities=34% Similarity=0.343 Sum_probs=24.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEA 47 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~ 47 (287)
.|.+.||+|+||||+|+.|+..+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~ 29 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIP 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcC
Confidence 37899999999999999999999654444
No 388
>PRK13949 shikimate kinase; Provisional
Probab=97.42 E-value=0.00016 Score=57.45 Aligned_cols=23 Identities=43% Similarity=0.596 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+|+||+|||++++.|++.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 59999999999999999999998
No 389
>PRK06217 hypothetical protein; Validated
Probab=97.41 E-value=0.00018 Score=57.87 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.|+|.|++|+||||+++.|++.+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 59999999999999999999998
No 390
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.0021 Score=51.06 Aligned_cols=95 Identities=20% Similarity=0.317 Sum_probs=52.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc--cchhhhhC---CCCCC----------Ccccch-hhHH
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK--HTVSKFFG---SPPGY----------VGFENG-GQLT 82 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~----------~~~~~~-~~~~ 82 (287)
.+.+.||+|+||||+.+.++..+......+. ++....... ......++ ..+.. .+.... -.+.
T Consensus 30 ~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la 108 (171)
T cd03228 30 KVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-IDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIA 108 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCEEE-ECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHHH
Confidence 6999999999999999999998755444432 332211100 00000000 00000 000000 0123
Q ss_pred HHHHhCCcEEEEEcCcc-cccHHHHHHHHHhhcC
Q 047225 83 EAVRHRPHSVILFDEIE-KAHRDVLNVMLQLLDD 115 (287)
Q Consensus 83 ~~~~~~~~~il~iDeid-~~~~~~~~~L~~~l~~ 115 (287)
.++...+ .++++||-. .+++.....+.+++.+
T Consensus 109 ~al~~~p-~llllDEP~~gLD~~~~~~l~~~l~~ 141 (171)
T cd03228 109 RALLRDP-PILILDEATSALDPETEALILEALRA 141 (171)
T ss_pred HHHhcCC-CEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 3333333 799999966 6788888778777764
No 391
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.41 E-value=0.00053 Score=65.14 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.7
Q ss_pred cEEEEEcCcccccHHHHHHHHHhhcC
Q 047225 90 HSVILFDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 90 ~~il~iDeid~~~~~~~~~L~~~l~~ 115 (287)
..++++||+..++-.....|++.+..
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al~~ 291 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDALPP 291 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhccc
Confidence 36999999999999999988888764
No 392
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.40 E-value=0.00098 Score=61.21 Aligned_cols=83 Identities=16% Similarity=0.247 Sum_probs=51.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccccc-chhhhhCCCCC---CCcccchhhHHHHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKH-TVSKFFGSPPG---YVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
.+++.|+||+|||+++..++......+.+.++++..+..... .....++.... .........+.+.+......+++
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~~lVV 161 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKPDLVV 161 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCCCEEE
Confidence 689999999999999999998875445677777765433211 00111221100 00111234556666666668999
Q ss_pred EcCcccc
Q 047225 95 FDEIEKA 101 (287)
Q Consensus 95 iDeid~~ 101 (287)
||++..+
T Consensus 162 IDSIq~l 168 (446)
T PRK11823 162 IDSIQTM 168 (446)
T ss_pred Eechhhh
Confidence 9999854
No 393
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.40 E-value=0.0023 Score=64.11 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+++.||+|.||||++....+..
T Consensus 34 ~~~v~apaG~GKTtl~~~~~~~~ 56 (903)
T PRK04841 34 LVLVTSPAGYGKTTLISQWAAGK 56 (903)
T ss_pred eEEEECCCCCCHHHHHHHHHHhC
Confidence 59999999999999999988654
No 394
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.39 E-value=0.00018 Score=55.51 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=23.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMV 49 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 49 (287)
.+.+.|||||||||+++.||+.+ +.+++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~---gl~~v 29 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL---GLKLV 29 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh---CCcee
Confidence 37799999999999999999999 44443
No 395
>PRK14530 adenylate kinase; Provisional
Probab=97.38 E-value=0.0002 Score=59.20 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||||+||||+++.|++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999998
No 396
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.38 E-value=0.00035 Score=61.68 Aligned_cols=94 Identities=24% Similarity=0.382 Sum_probs=51.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEec-ccccccc--cchhhhhCC-CCCCCcccchhhHHHHHHhCCcEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRID-MSEYMEK--HTVSKFFGS-PPGYVGFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~-~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~il 93 (287)
.++++.||+|+||||++++|...+... ..++++. ..++.-. ..+...+.. ..+..+.+....+...++..+ ..+
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~-~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~p-D~I 240 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQ-ERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRP-DRI 240 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCC-CCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCC-CeE
Confidence 479999999999999999999988543 3444443 2222211 000000000 011111222233445566555 899
Q ss_pred EEcCcccccHHHHHHHHHhhcCc
Q 047225 94 LFDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 94 ~iDeid~~~~~~~~~L~~~l~~~ 116 (287)
++.|+-. .+... +++.+..|
T Consensus 241 ivGEiR~--~ea~~-~l~a~~tG 260 (344)
T PRK13851 241 LLGEMRD--DAAWA-YLSEVVSG 260 (344)
T ss_pred EEEeeCc--HHHHH-HHHHHHhC
Confidence 9999985 34554 44555543
No 397
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.37 E-value=0.00044 Score=53.35 Aligned_cols=86 Identities=17% Similarity=0.227 Sum_probs=51.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccc-hhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFEN-GGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~il~iDe 97 (287)
.+.+.||+|+||||+.+.++..+......+ .++... ...-+.+ ..+... .-.+..++...+ .++++||
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~~~~--~i~~~~~-------lS~G~~~rv~laral~~~p-~illlDE 96 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDEGIV-TWGSTV--KIGYFEQ-------LSGGEKMRLALAKLLLENP-NLLLLDE 96 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCeE--EEEEEcc-------CCHHHHHHHHHHHHHhcCC-CEEEEeC
Confidence 689999999999999999998875443332 222110 0000000 111111 112333444434 6999999
Q ss_pred cc-cccHHHHHHHHHhhcC
Q 047225 98 IE-KAHRDVLNVMLQLLDD 115 (287)
Q Consensus 98 id-~~~~~~~~~L~~~l~~ 115 (287)
-. .+++.....+.+++.+
T Consensus 97 P~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 97 PTNHLDLESIEALEEALKE 115 (144)
T ss_pred CccCCCHHHHHHHHHHHHH
Confidence 76 6788888888887764
No 398
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.35 E-value=0.00034 Score=57.54 Aligned_cols=39 Identities=31% Similarity=0.449 Sum_probs=29.1
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
++. .+.+.|++||||||+++.|+..+. ...+..++...+
T Consensus 5 ~~~-iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPI-IIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSY 43 (209)
T ss_pred CCE-EEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcc
Confidence 344 799999999999999999999883 234444555444
No 399
>PF13245 AAA_19: Part of AAA domain
Probab=97.34 E-value=0.00027 Score=48.14 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=16.6
Q ss_pred EEEEeccCCChHHH-HHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTE-LANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~-la~~la~~l 41 (287)
.+++.||||||||+ +++.++..+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 47779999999995 455555444
No 400
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.34 E-value=0.00067 Score=60.59 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=23.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.++++||+|+|||++++.+++.+...
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhccc
Confidence 58999999999999999999987443
No 401
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.34 E-value=0.001 Score=59.02 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=57.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc-----cchhhhhCCCCCCCcccchhhHHHHHHh----C
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK-----HTVSKFFGSPPGYVGFENGGQLTEAVRH----R 88 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 88 (287)
..++|+||+|+||||++..|+..+...+..+..+++..+... .......+-+ -+... ....+.+++.. .
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvp-v~~~~-dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVE-LIVAT-SPAELEEAVQYMTYVN 284 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCC-EEecC-CHHHHHHHHHHHHhcC
Confidence 479999999999999999999877555566667777665431 1112222211 11111 22344444332 2
Q ss_pred CcEEEEEcCccccc--HHHHHHHHHhhc
Q 047225 89 PHSVILFDEIEKAH--RDVLNVMLQLLD 114 (287)
Q Consensus 89 ~~~il~iDeid~~~--~~~~~~L~~~l~ 114 (287)
...+|+||=..+.+ .+....|..+.+
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~ 312 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTD 312 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhh
Confidence 45799999998754 455666666554
No 402
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.33 E-value=0.0011 Score=58.07 Aligned_cols=94 Identities=23% Similarity=0.425 Sum_probs=50.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEec-cccccccc-chhhhhCCC--CCCCcccchhhHHHHHHhCCcEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRID-MSEYMEKH-TVSKFFGSP--PGYVGFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il 93 (287)
.++++.||+|+||||+++++...+... ..++.+. ..++.-.. ....++-.. .+....+....+...++..+ .++
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~-~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~p-d~i 222 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKD-ERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRP-DRI 222 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCcc-ccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCC-CeE
Confidence 379999999999999999999887543 3344443 22211110 000111010 11111222223444555444 799
Q ss_pred EEcCcccccHHHHHHHHHhhcCc
Q 047225 94 LFDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 94 ~iDeid~~~~~~~~~L~~~l~~~ 116 (287)
++||+-. .+... +++.+..|
T Consensus 223 i~gE~r~--~e~~~-~l~a~~~g 242 (308)
T TIGR02788 223 ILGELRG--DEAFD-FIRAVNTG 242 (308)
T ss_pred EEeccCC--HHHHH-HHHHHhcC
Confidence 9999995 44444 45555443
No 403
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.33 E-value=0.00022 Score=55.27 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=20.7
Q ss_pred EEEeccCCChHHHHHHHHHHHh
Q 047225 20 FLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l 41 (287)
++|+|+||+||||+++.|++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999999986
No 404
>PRK06762 hypothetical protein; Provisional
Probab=97.32 E-value=0.00024 Score=56.18 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=25.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
.++|+|+||+||||+|+.|++.+. ..++.++.
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~~ 35 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLG---RGTLLVSQ 35 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCeEEecH
Confidence 589999999999999999999982 23445544
No 405
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0019 Score=59.76 Aligned_cols=87 Identities=20% Similarity=0.287 Sum_probs=47.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC--CCceEEecccccccccc-hhhhhCCCCCC--CcccchhhHHHHHHh-CCcE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS--KEAMVRIDMSEYMEKHT-VSKFFGSPPGY--VGFENGGQLTEAVRH-RPHS 91 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~ 91 (287)
..+.|+||+|+||||++..|+..+... +..+..+++..+..... -...++...+. ........+...+.. ..+.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~D 430 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYK 430 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccCC
Confidence 479999999999999999998876322 23455555544332100 00111111110 011112234444433 3457
Q ss_pred EEEEcCcccccHH
Q 047225 92 VILFDEIEKAHRD 104 (287)
Q Consensus 92 il~iDeid~~~~~ 104 (287)
+|+||..-..+.+
T Consensus 431 LVLIDTaG~s~~D 443 (559)
T PRK12727 431 LVLIDTAGMGQRD 443 (559)
T ss_pred EEEecCCCcchhh
Confidence 9999999876543
No 406
>PRK06547 hypothetical protein; Provisional
Probab=97.32 E-value=0.00029 Score=56.06 Aligned_cols=27 Identities=44% Similarity=0.549 Sum_probs=23.2
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHh
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..+. .+++.|++|+|||++++.|++.+
T Consensus 13 ~~~~-~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMI-TVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHh
Confidence 3344 68899999999999999999986
No 407
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.0014 Score=52.20 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=23.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKE 46 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~ 46 (287)
.+.++||+|+||||+.+.|+..+.+...
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~G 55 (173)
T cd03230 28 IYGLLGPNGAGKTTLIKIILGLLKPDSG 55 (173)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 6899999999999999999987744333
No 408
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.31 E-value=0.0004 Score=57.60 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=17.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++.||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48999999999998776666666
No 409
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.31 E-value=0.00046 Score=58.97 Aligned_cols=35 Identities=23% Similarity=0.170 Sum_probs=25.2
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
++|+|-||+|||++++.|...+.........++..
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~ 38 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD 38 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 89999999999999999999986655666666643
No 410
>PRK14531 adenylate kinase; Provisional
Probab=97.30 E-value=0.00029 Score=56.69 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++||||+||||+++.|++.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999988
No 411
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.30 E-value=0.0011 Score=57.87 Aligned_cols=82 Identities=22% Similarity=0.220 Sum_probs=49.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhC--------CCCCCCcccchhhHHHHHHhCCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFG--------SPPGYVGFENGGQLTEAVRHRPH 90 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 90 (287)
.+.++||||||||+++-.++......+...++++.....+.. ....+| ..+. .+-.....+...++....
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~-~a~~lGvd~~~l~v~~p~-~~eq~l~~~~~li~~~~~ 134 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV-YARKLGVDIDNLLVSQPD-TGEQALEIAETLVRSGAV 134 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH-HHHHcCCCHHHeEEecCC-CHHHHHHHHHHHhhccCC
Confidence 689999999999999988777765567788888876544321 111111 1111 110011112233444556
Q ss_pred EEEEEcCccccc
Q 047225 91 SVILFDEIEKAH 102 (287)
Q Consensus 91 ~il~iDeid~~~ 102 (287)
.+++||-+..+.
T Consensus 135 ~lIVIDSv~al~ 146 (321)
T TIGR02012 135 DIIVVDSVAALV 146 (321)
T ss_pred cEEEEcchhhhc
Confidence 799999988553
No 412
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.30 E-value=0.00022 Score=57.07 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.||||+||||+|+.|++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999996
No 413
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00022 Score=56.12 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMV 49 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 49 (287)
+++|+|++|+||||+.+.||+.+ +.+++
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L---~~~F~ 31 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKAL---NLPFI 31 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHc---CCCcc
Confidence 69999999999999999999999 55554
No 414
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.28 E-value=0.00025 Score=57.47 Aligned_cols=22 Identities=45% Similarity=0.718 Sum_probs=21.1
Q ss_pred EEEeccCCChHHHHHHHHHHHh
Q 047225 20 FLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l 41 (287)
++++||||+||||+++.|++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7999999999999999999987
No 415
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.28 E-value=0.00029 Score=54.24 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=21.1
Q ss_pred EEEeccCCChHHHHHHHHHHHh
Q 047225 20 FLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l 41 (287)
+++.|+||||||++++.|++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999988
No 416
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.28 E-value=0.0029 Score=61.83 Aligned_cols=115 Identities=24% Similarity=0.381 Sum_probs=59.0
Q ss_pred EEEEeccCCChHHHHH-HHHHHHhcCCCCceEEecccccccc---cchhhhhCCCCC-CCcc----------------cc
Q 047225 19 SFLFTGPTGVGKTELA-NALAFEYFGSKEAMVRIDMSEYMEK---HTVSKFFGSPPG-YVGF----------------EN 77 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la-~~la~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~----------------~~ 77 (287)
.++|.||+|+||||-. +.+.+........+..-..-..... ..+.+.++...| .+|| .-
T Consensus 67 vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mT 146 (845)
T COG1643 67 VVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMT 146 (845)
T ss_pred EEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEec
Confidence 7999999999999855 4444444322222222222221111 223344444322 1221 11
Q ss_pred hhhHHHHHHh----CCcEEEEEcCccc--ccHHHH-HHHHHhhcCceeecCCCceeeccce-EEEEeecCCchhh
Q 047225 78 GGQLTEAVRH----RPHSVILFDEIEK--AHRDVL-NVMLQLLDDGRVTDGKGQTVDLKNT-IIIMTSNIGDSVI 144 (287)
Q Consensus 78 ~~~~~~~~~~----~~~~il~iDeid~--~~~~~~-~~L~~~l~~~~~~~~~g~~i~~~~~-~iI~t~n~~~~~~ 144 (287)
.+.+...+.. ..+++++|||++. ++.++. ..|.+++...+ ++. ++|++++.....+
T Consensus 147 dGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr-----------~DLKiIimSATld~~rf 210 (845)
T COG1643 147 DGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRR-----------DDLKLIIMSATLDAERF 210 (845)
T ss_pred cHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcC-----------CCceEEEEecccCHHHH
Confidence 3445555553 4568999999995 344443 34444455432 112 5667777765544
No 417
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.28 E-value=0.0021 Score=51.35 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=18.6
Q ss_pred EEEEeccCCChHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALA 38 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la 38 (287)
.+.|.||.|+|||||.+.+.
T Consensus 23 ~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 23 LVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999999985
No 418
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.28 E-value=0.0004 Score=58.00 Aligned_cols=45 Identities=27% Similarity=0.368 Sum_probs=32.8
Q ss_pred CCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEE-ecccccc
Q 047225 12 DPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVR-IDMSEYM 57 (287)
Q Consensus 12 ~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~-~~~~~~~ 57 (287)
.++++. .+.|.||+|+||||+++.|+..+...+..... +.+.++.
T Consensus 29 ~~~~~~-iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 29 EPQRRT-IVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred cCCCCE-EEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 445555 69999999999999999999998655444333 4444443
No 419
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.27 E-value=0.00024 Score=55.97 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=20.5
Q ss_pred EEEeccCCChHHHHHHHHHHHh
Q 047225 20 FLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l 41 (287)
++++||+|+||||+++.|++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999988
No 420
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.27 E-value=0.002 Score=51.59 Aligned_cols=95 Identities=23% Similarity=0.258 Sum_probs=52.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc--cc----------hhhhhC------CCCCC-Ccccchh
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK--HT----------VSKFFG------SPPGY-VGFENGG 79 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~----------~~~~~~------~~~~~-~~~~~~~ 79 (287)
.+.|.||+|+||||+.+.++..+.+....+ .++....... .. ....++ ..... .+.....
T Consensus 27 ~~~l~G~nGsGKStLl~~i~G~~~~~~G~v-~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qr 105 (180)
T cd03214 27 IVGILGPNGAGKSTLLKTLAGLLKPSSGEI-LLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQR 105 (180)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEE-EECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHH
Confidence 689999999999999999998875544443 3332221110 00 011111 11111 1111111
Q ss_pred -hHHHHHHhCCcEEEEEcCcc-cccHHHHHHHHHhhcC
Q 047225 80 -QLTEAVRHRPHSVILFDEIE-KAHRDVLNVMLQLLDD 115 (287)
Q Consensus 80 -~~~~~~~~~~~~il~iDeid-~~~~~~~~~L~~~l~~ 115 (287)
.+..++.. +..++++||-. .+++.....+.+++..
T Consensus 106 l~laral~~-~p~llllDEP~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 106 VLLARALAQ-EPPILLLDEPTSHLDIAHQIELLELLRR 142 (180)
T ss_pred HHHHHHHhc-CCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 12233333 33799999976 6788877777777764
No 421
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.27 E-value=0.00031 Score=56.35 Aligned_cols=39 Identities=28% Similarity=0.391 Sum_probs=31.3
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYME 58 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 58 (287)
+.+.|++|+||||+++.|+..+...+.....++..++..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 689999999999999999999854445666677666653
No 422
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.27 E-value=0.0012 Score=52.97 Aligned_cols=29 Identities=31% Similarity=0.174 Sum_probs=24.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEA 47 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~ 47 (287)
.+.|.||+|+||||+.+.|+..+.+....
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 56 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLRPPASGE 56 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 68999999999999999999987554443
No 423
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.27 E-value=0.00057 Score=60.21 Aligned_cols=94 Identities=21% Similarity=0.376 Sum_probs=53.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEec-cccccc-c-cchhhhhCCC--CCCCcccchhhHHHHHHhCCcEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRID-MSEYME-K-HTVSKFFGSP--PGYVGFENGGQLTEAVRHRPHSV 92 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~-~~~~~~-~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i 92 (287)
.+++++|++|+||||+.++|...+.. ...++++. ..++.- . .....++... .+....+....+...++..| +.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~-~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~P-D~ 238 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPA-IERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRP-DR 238 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCC-CCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCC-Ce
Confidence 37999999999999999999988854 34455542 222221 0 0001111111 11112222233445555555 89
Q ss_pred EEEcCcccccHHHHHHHHHhhcCc
Q 047225 93 ILFDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 93 l~iDeid~~~~~~~~~L~~~l~~~ 116 (287)
+++.|+-.. +... +++.+..|
T Consensus 239 IivGEiR~~--ea~~-~l~a~~tG 259 (332)
T PRK13900 239 IIVGELRGA--EAFS-FLRAINTG 259 (332)
T ss_pred EEEEecCCH--HHHH-HHHHHHcC
Confidence 999999953 4444 46667765
No 424
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.26 E-value=0.0011 Score=59.34 Aligned_cols=50 Identities=22% Similarity=0.427 Sum_probs=35.6
Q ss_pred chhhhhccCCCCCCCcEEEEEeccCCChHHHHH--HHHHHHhcCCCCceEEeccccccc
Q 047225 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELA--NALAFEYFGSKEAMVRIDMSEYME 58 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la--~~la~~l~~~~~~~~~~~~~~~~~ 58 (287)
.+++++.-+.....+ .+++.||.|+||+.++ +.|.. .....++||.....
T Consensus 4 ~~~~L~~wL~e~~~T--FIvV~GPrGSGK~elV~d~~L~~-----r~~vL~IDC~~i~~ 55 (431)
T PF10443_consen 4 AIEQLKSWLNENPNT--FIVVQGPRGSGKRELVMDHVLKD-----RKNVLVIDCDQIVK 55 (431)
T ss_pred HHHHHHHHHhcCCCe--EEEEECCCCCCccHHHHHHHHhC-----CCCEEEEEChHhhh
Confidence 356666666665444 4999999999999999 44433 34488999987655
No 425
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.26 E-value=0.00055 Score=60.93 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
..+++||+|+|||++++.+++.+..
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHh
Confidence 4889999999999999999998843
No 426
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.25 E-value=0.0034 Score=57.19 Aligned_cols=39 Identities=28% Similarity=0.405 Sum_probs=26.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM 57 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 57 (287)
..+-++||+|+|||||+|.+.....+. .=.+.+|..++.
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~-~G~VRLDga~l~ 401 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVGIWPPT-SGSVRLDGADLR 401 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHcccccC-CCcEEecchhhh
Confidence 358899999999999999998776332 222344444433
No 427
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.25 E-value=0.00033 Score=58.42 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||||+||||+++.|++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 49999999999999999999988
No 428
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.25 E-value=0.0007 Score=58.82 Aligned_cols=91 Identities=29% Similarity=0.375 Sum_probs=51.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC--CCceEEecc-cccccc-cchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS--KEAMVRIDM-SEYMEK-HTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~--~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
+++++||+|+||||++++|...+... ...++++.. .++.-. .....+. ...+ .+ .....+...++..+ ..++
T Consensus 134 ~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~-~~~~-~~-~~~~~l~~aLR~~p-D~ii 209 (299)
T TIGR02782 134 NILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLR-TSDD-AI-SMTRLLKATLRLRP-DRII 209 (299)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEE-ecCC-CC-CHHHHHHHHhcCCC-CEEE
Confidence 79999999999999999999887432 344444432 222110 0000110 0001 11 22233445555554 8999
Q ss_pred EcCcccccHHHHHHHHHhhcCc
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~ 116 (287)
+.|+-. ++... +++.+..|
T Consensus 210 vGEiR~--~ea~~-~l~a~~tG 228 (299)
T TIGR02782 210 VGEVRG--GEALD-LLKAWNTG 228 (299)
T ss_pred EeccCC--HHHHH-HHHHHHcC
Confidence 999985 34443 46677665
No 429
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.24 E-value=0.00037 Score=56.07 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+++.||||+||||+++.|++.+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999887
No 430
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.23 E-value=0.0015 Score=56.52 Aligned_cols=100 Identities=21% Similarity=0.372 Sum_probs=65.4
Q ss_pred CCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccccc--ch---hhhhCCC--CCCCcccchhhHHHHH
Q 047225 13 PNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKH--TV---SKFFGSP--PGYVGFENGGQLTEAV 85 (287)
Q Consensus 13 ~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~--~~~~~~~~~~~~~~~~ 85 (287)
.++|. +++|+|-.|+||||.+-.||+.+...+..++..-+..+...- .+ ....|-. .+..|.+...-+++++
T Consensus 136 ~~~p~-Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi 214 (340)
T COG0552 136 EKKPF-VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAI 214 (340)
T ss_pred CCCcE-EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHH
Confidence 34565 899999999999999999999998777887777776665421 11 1111211 1113555554555544
Q ss_pred H---hCCcEEEEEcCcccccH--HHHHHHHHhh
Q 047225 86 R---HRPHSVILFDEIEKAHR--DVLNVMLQLL 113 (287)
Q Consensus 86 ~---~~~~~il~iDeid~~~~--~~~~~L~~~l 113 (287)
+ ....++|++|=+.+++. .+.+.|.++.
T Consensus 215 ~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~ 247 (340)
T COG0552 215 QAAKARGIDVVLIDTAGRLHNKKNLMDELKKIV 247 (340)
T ss_pred HHHHHcCCCEEEEeCcccccCchhHHHHHHHHH
Confidence 4 46678999999999865 3555554443
No 431
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.23 E-value=0.00058 Score=60.49 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
..+++||+|||||++++.+++.+..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999998844
No 432
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=97.23 E-value=0.0024 Score=66.57 Aligned_cols=153 Identities=18% Similarity=0.242 Sum_probs=98.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCC-CCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSP-PGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
.++++||+|+|||.++.............. ++.+.+.........+-.. ..+.+.. -.-.....-++|+||
T Consensus 129 ~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~--~~fs~~ts~~~~q~~~~~~~~k~~~~~------~~~~~~~~~~~f~dd 200 (1395)
T KOG3595|consen 129 PVLLVGPTGTGKTVLVLSELRSLQDREVYL--LNFSSVTSSELLQEIIESKLDKRRSGN------YGPPLGKKLVLFVDD 200 (1395)
T ss_pred eEEEEcCCCCCeeeehHHHHHhcccchheE--EeeeeeccHHHHHHHHHHHHHHhcccC------CCCCCCceeEEEEec
Confidence 589999999999988877776653322222 4444444332222211100 0000000 000011235999999
Q ss_pred cccc------cHHHHHHHHHhhcCceeecCC-CceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 98 IEKA------HRDVLNVMLQLLDDGRVTDGK-GQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 98 id~~------~~~~~~~L~~~l~~~~~~~~~-g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
++.. .......+++.++.+.+.... +.++...++.++.+++++..+. ..+++.
T Consensus 201 inmp~~~~yg~q~~~~~lrq~~e~~g~~~~~~~~~~~i~~i~~~~a~~~~~~gr--------------------~~i~~r 260 (1395)
T KOG3595|consen 201 INMPALDKYGDQPPIELLRQMLEHGGFYDRKKSEWVEIENVQLVGAMNPPGGGR--------------------NDITER 260 (1395)
T ss_pred cCCchhhhcCCccHHHHHHHHHHhceeecccccceeEEeeeEEEeecCCCCCcc--------------------CcccHH
Confidence 9954 335778899999988777654 5777778999999999743321 246788
Q ss_pred HHhccCceEEeCCCCHHHHHHHHHHHHHHH
Q 047225 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEI 200 (287)
Q Consensus 171 l~~r~~~~i~~~~~~~~~~~~il~~~l~~~ 200 (287)
|.++| ..+.+..++.+.+..|...++...
T Consensus 261 ~~r~f-~~~~~~~~~~~sl~~if~~~~~~~ 289 (1395)
T KOG3595|consen 261 FLRHF-LIVSLNYPSQESLTQIFNTILTGH 289 (1395)
T ss_pred HHHHe-eeEeeCCCChhhHHHHHHHHHhcc
Confidence 88889 999999999999999998777543
No 433
>PRK13946 shikimate kinase; Provisional
Probab=97.22 E-value=0.00041 Score=55.88 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=25.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVR 50 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~ 50 (287)
+++|+|.+|+|||++++.|++.+ +.+++-
T Consensus 12 ~I~l~G~~GsGKsti~~~LA~~L---g~~~id 40 (184)
T PRK13946 12 TVVLVGLMGAGKSTVGRRLATML---GLPFLD 40 (184)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCCeEC
Confidence 69999999999999999999998 555443
No 434
>PRK13948 shikimate kinase; Provisional
Probab=97.22 E-value=0.00045 Score=55.47 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=26.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEec
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRID 52 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 52 (287)
+++|+|.+|+||||+++.|++.+ +.+++-.|
T Consensus 12 ~I~LiG~~GsGKSTvg~~La~~l---g~~~iD~D 42 (182)
T PRK13948 12 WVALAGFMGTGKSRIGWELSRAL---MLHFIDTD 42 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCCEEECC
Confidence 79999999999999999999998 55555333
No 435
>PTZ00202 tuzin; Provisional
Probab=97.21 E-value=0.0019 Score=58.28 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=27.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.+.|+|++|||||++++.+...+ +...+..|..
T Consensus 288 ivvLtG~~G~GKTTLlR~~~~~l---~~~qL~vNpr 320 (550)
T PTZ00202 288 IVVFTGFRGCGKSSLCRSAVRKE---GMPAVFVDVR 320 (550)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC---CceEEEECCC
Confidence 68999999999999999999877 3445566665
No 436
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.21 E-value=0.0011 Score=52.61 Aligned_cols=77 Identities=25% Similarity=0.386 Sum_probs=45.6
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccc---hhhhhC-CCCCCCcccchhhHHHHHHhC-CcEEEE
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHT---VSKFFG-SPPGYVGFENGGQLTEAVRHR-PHSVIL 94 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~il~ 94 (287)
+++.|++|+|||++|..++... +.+.+++....-.+... +..... .+......+....+.+.+... ..++++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~---~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VL 78 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL---GGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVL 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc---CCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEE
Confidence 6899999999999999998763 45666665544333211 111111 122233333334566666543 346899
Q ss_pred EcCcc
Q 047225 95 FDEIE 99 (287)
Q Consensus 95 iDeid 99 (287)
||-+.
T Consensus 79 IDclt 83 (169)
T cd00544 79 IDCLT 83 (169)
T ss_pred EEcHh
Confidence 99876
No 437
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.21 E-value=0.00074 Score=59.07 Aligned_cols=90 Identities=24% Similarity=0.389 Sum_probs=51.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc--CCCCceEEec-cccccccc-chhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF--GSKEAMVRID-MSEYMEKH-TVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~--~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
+++++|++|+||||++++|...+. ..+..++++. ..++.... ....+.. ..+.+....+...++..| ..++
T Consensus 146 nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~----~~~~~~~~lv~~aLR~~P-D~Ii 220 (323)
T PRK13833 146 NIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHT----SDTVDMARLLKSTMRLRP-DRII 220 (323)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEecc----CCCcCHHHHHHHHhCCCC-CEEE
Confidence 699999999999999999998873 2234444443 22222110 0001100 011222233445555555 8999
Q ss_pred EcCcccccHHHHHHHHHhhcCc
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~ 116 (287)
+.|+-.. +... +++.+..|
T Consensus 221 vGEiRg~--ea~~-~l~a~~tG 239 (323)
T PRK13833 221 VGEVRDG--AALT-LLKAWNTG 239 (323)
T ss_pred EeecCCH--HHHH-HHHHHcCC
Confidence 9999853 4444 56666654
No 438
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.21 E-value=0.0015 Score=65.16 Aligned_cols=92 Identities=13% Similarity=0.063 Sum_probs=51.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHH----HhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAV----RHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~ 94 (287)
.+++.|++|||||++.+.+.......+..++.+-.+.... ..+....+....+....+..+- ...+..+|+
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA-----~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlI 438 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAA-----ENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLV 438 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHH-----HHHhhccCcchhhHHHHHhhhcccccccccCcEEE
Confidence 5789999999999999988776644344444333222111 1111111111111111111100 012346999
Q ss_pred EcCcccccHHHHHHHHHhhcC
Q 047225 95 FDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~ 115 (287)
|||+-.++......|++....
T Consensus 439 VDEASMv~~~~m~~LL~~a~~ 459 (988)
T PRK13889 439 IDEAGMVGTRQLERVLSHAAD 459 (988)
T ss_pred EECcccCCHHHHHHHHHhhhh
Confidence 999999999988888776643
No 439
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.20 E-value=0.00077 Score=59.02 Aligned_cols=90 Identities=27% Similarity=0.405 Sum_probs=51.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc--CCCCceEEec-cccccccc-chhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF--GSKEAMVRID-MSEYMEKH-TVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~--~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
+++++|++|+||||++++|...+. .....++++. ..++.... ....+.. ....+....+...++..| +.++
T Consensus 150 ~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~----~~~~~~~~ll~~aLR~~P-D~Ii 224 (319)
T PRK13894 150 NILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHT----SIDVNMTALLKTTLRMRP-DRIL 224 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEec----CCCCCHHHHHHHHhcCCC-CEEE
Confidence 799999999999999999998752 2234444443 22322110 0001100 011222234445555555 8999
Q ss_pred EcCcccccHHHHHHHHHhhcCc
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~ 116 (287)
+.|+-.. +... +++.+..|
T Consensus 225 vGEiR~~--Ea~~-~l~A~~tG 243 (319)
T PRK13894 225 VGEVRGP--EALD-LLMAWNTG 243 (319)
T ss_pred EeccCCH--HHHH-HHHHHHcC
Confidence 9999954 4443 56777765
No 440
>PRK14528 adenylate kinase; Provisional
Probab=97.20 E-value=0.00043 Score=55.90 Aligned_cols=23 Identities=35% Similarity=0.616 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
++++.||||+||||+++.|++.+
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 441
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.20 E-value=0.00044 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
+++|+|++|+|||++++.|++.+
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc
Confidence 69999999999999999999987
No 442
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00032 Score=54.84 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|.|||||||+++.|+ .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 48999999999999999999 55
No 443
>PRK07667 uridine kinase; Provisional
Probab=97.20 E-value=0.00056 Score=55.57 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=32.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM 57 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 57 (287)
.|.+.|++|+||||+++.|++.+...+.+...++..++.
T Consensus 19 iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~ 57 (193)
T PRK07667 19 ILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYI 57 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCccc
Confidence 699999999999999999999986555666666666654
No 444
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.19 E-value=0.0022 Score=54.73 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=55.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccc--ccchhh---hhCCCCCCCcccchhhHHHHH---Hh-C
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYME--KHTVSK---FFGSPPGYVGFENGGQLTEAV---RH-R 88 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~-~ 88 (287)
..++|+||+|+|||++++.++..+.........+++..+.- ...+.. ..+-+ -..... ...+.+.+ .. .
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~-~~~~~~-~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-VIAVRD-EAAMTRALTYFKEEA 153 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCce-EEecCC-HHHHHHHHHHHHhcC
Confidence 37999999999999999999988754445555566544321 111111 11100 001111 12333333 22 3
Q ss_pred CcEEEEEcCccccc--HHHHHHHHHhhc
Q 047225 89 PHSVILFDEIEKAH--RDVLNVMLQLLD 114 (287)
Q Consensus 89 ~~~il~iDeid~~~--~~~~~~L~~~l~ 114 (287)
+..+++||..-+.+ ...+..|.++++
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~ 181 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMG 181 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHh
Confidence 56799999998874 456666776665
No 445
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.19 E-value=0.0011 Score=54.10 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=19.1
Q ss_pred EEEEeccCCChHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALA 38 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la 38 (287)
.++|+||.|+||||+.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999998
No 446
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.19 E-value=0.0065 Score=54.41 Aligned_cols=118 Identities=19% Similarity=0.329 Sum_probs=70.1
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc--cc---hhh-----hhCCCCCCCcccchhhHHH
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK--HT---VSK-----FFGSPPGYVGFENGGQLTE 83 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~---~~~-----~~~~~~~~~~~~~~~~~~~ 83 (287)
.+|. .++++|--|+||||++-.||..+...+.....+.|..|... .. +.. +|+...+.....-...-.+
T Consensus 98 ~~P~-vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 98 KPPT-VILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCe-EEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 3454 79999999999999999999999776777777777766543 11 111 2222111111111122334
Q ss_pred HHHhCCcEEEEEcCcccccH--HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCch
Q 047225 84 AVRHRPHSVILFDEIEKAHR--DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDS 142 (287)
Q Consensus 84 ~~~~~~~~il~iDeid~~~~--~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~ 142 (287)
..+...+.++++|-+.+++- +..+.+..+-+. +.+..+++|+-+-.+..
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~----------~~P~E~llVvDam~GQd 227 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEV----------INPDETLLVVDAMIGQD 227 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhh----------cCCCeEEEEEecccchH
Confidence 55556678999999987644 455555544432 22334556665555433
No 447
>PRK02496 adk adenylate kinase; Provisional
Probab=97.19 E-value=0.00042 Score=55.78 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++||||+||||+++.|++.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 448
>PRK08233 hypothetical protein; Provisional
Probab=97.18 E-value=0.00053 Score=54.84 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=22.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.+.|+||+||||+++.|+..+.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 689999999999999999999883
No 449
>COG4240 Predicted kinase [General function prediction only]
Probab=97.18 E-value=0.027 Score=46.31 Aligned_cols=196 Identities=15% Similarity=0.206 Sum_probs=94.5
Q ss_pred CCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC-CceEEeccccccccc----chhhhh-----C-CCCCCCcccchhh
Q 047225 12 DPNRPISSFLFTGPTGVGKTELANALAFEYFGSK-EAMVRIDMSEYMEKH----TVSKFF-----G-SPPGYVGFENGGQ 80 (287)
Q Consensus 12 ~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~----~~~~~~-----~-~~~~~~~~~~~~~ 80 (287)
..++|+ .+.++||-|||||+++..|...+...+ ....+.+..++.-.. .+.+-+ + ..+|.-..+....
T Consensus 46 e~grPl-i~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgln 124 (300)
T COG4240 46 ERGRPL-IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN 124 (300)
T ss_pred hcCCce-EEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence 345687 699999999999999999988886555 366666665543221 111110 0 1122211222223
Q ss_pred HHHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEe-----ecCCchhhhhh--ccCC--
Q 047225 81 LTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMT-----SNIGDSVIARE--SILG-- 151 (287)
Q Consensus 81 ~~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t-----~n~~~~~~~~~--~~~~-- 151 (287)
+.+.+..+... +.+=-+||.... -.| -..+.+.++..+--++|+- .+|-....... +.+.
T Consensus 125 VLnai~~g~~~-V~lPrfDKS~f~---------gag-DR~p~~q~ik~~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ 193 (300)
T COG4240 125 VLNAIARGGPT-VPLPRFDKSAFA---------GAG-DRAPQTQWIKFEVDIVILEGWFVGFRPIDPELLAAPVNALEAA 193 (300)
T ss_pred HHHHHhcCCCC-cccccccchhcc---------CCC-CCCCcccceecceeEEEEeeeeeecccCCHHHhCCCCccchhh
Confidence 34444444322 333333332110 000 0111233444443344442 12211111000 0000
Q ss_pred -chHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhcc
Q 047225 152 -SDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGY 226 (287)
Q Consensus 152 -~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~ 226 (287)
.....--++..+ ..=.+|+.|++..|.+.+++......+=...-.++..++.+ ..+++.+....++.+
T Consensus 194 ed~a~~~dvN~kL--a~Y~pL~~rIdsLillta~din~vy~WRlQqEhkliAr~~k-----gmsdeqv~efvn~ym 262 (300)
T COG4240 194 EDGAWRADVNDKL--APYRPLFDRIDSLILLTAPDINTVYAWRLQQEHKLIARLAK-----GMSDEQVSEFVNAYM 262 (300)
T ss_pred ccccHHHHHHhhh--hhhHHHHHHhhheeEecccchHHHHHHHHHHHHHHHHHHhc-----cCcHHHHHHHHHHHH
Confidence 000011111111 12256889999999999999887777655444444444433 357788887777654
No 450
>PLN02200 adenylate kinase family protein
Probab=97.18 E-value=0.00054 Score=57.37 Aligned_cols=34 Identities=12% Similarity=0.270 Sum_probs=27.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM 57 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 57 (287)
.++++|+||+||||+++.|++.+ + +..+++++..
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~---g--~~his~gdll 78 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETF---G--FKHLSAGDLL 78 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEEccHHH
Confidence 68999999999999999999987 3 3355555544
No 451
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.17 E-value=0.00041 Score=58.73 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.2
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
++|+|+||+||||+|+.|++.+...+..++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 7899999999999999999988544455555543
No 452
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.17 E-value=0.00053 Score=55.84 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=27.3
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM 57 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 57 (287)
+.+.||+|+||||+++.|+..+. +.....+.+..+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~--~~~~~v~~~D~~~ 37 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG--NPKVVIISQDSYY 37 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCCeEEEEecccc
Confidence 67999999999999999999872 3344555555544
No 453
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.004 Score=56.39 Aligned_cols=24 Identities=42% Similarity=0.619 Sum_probs=21.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..+.|+||+|+||||++..|+..+
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999998764
No 454
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.16 E-value=0.0043 Score=50.73 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=23.3
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHh
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..|. .+.|+|+.||||||+++.+++.+
T Consensus 4 ~~~~-~IglTG~iGsGKStv~~~l~~~l 30 (204)
T PRK14733 4 INTY-PIGITGGIASGKSTATRILKEKL 30 (204)
T ss_pred CceE-EEEEECCCCCCHHHHHHHHHHHc
Confidence 3454 59999999999999999999876
No 455
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.16 E-value=0.00054 Score=54.39 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMV 49 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 49 (287)
+++|+|++|+|||++++.|++.+ +.+++
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~l---g~~~~ 31 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQAL---GYRFV 31 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 58899999999999999999998 45554
No 456
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0015 Score=55.00 Aligned_cols=96 Identities=21% Similarity=0.237 Sum_probs=52.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc--cc-----ccc-ccchhhhhCCC-------C-CCCcccchhh-H
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM--SE-----YME-KHTVSKFFGSP-------P-GYVGFENGGQ-L 81 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~--~~-----~~~-~~~~~~~~~~~-------~-~~~~~~~~~~-~ 81 (287)
.+-|+|++||||||+++.+.....+....++.-.. .. ..+ -..+....|.. + ...|....+- +
T Consensus 41 ~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~I 120 (268)
T COG4608 41 TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGI 120 (268)
T ss_pred EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHH
Confidence 58899999999999999999988655544432211 11 111 01111222211 1 1112222222 3
Q ss_pred HHHHHhCCcEEEEEcCcc-cccHHHHHHHHHhhcC
Q 047225 82 TEAVRHRPHSVILFDEIE-KAHRDVLNVMLQLLDD 115 (287)
Q Consensus 82 ~~~~~~~~~~il~iDeid-~~~~~~~~~L~~~l~~ 115 (287)
..++...| .+++.||.- .++..++..++.++.+
T Consensus 121 ARALal~P-~liV~DEpvSaLDvSiqaqIlnLL~d 154 (268)
T COG4608 121 ARALALNP-KLIVADEPVSALDVSVQAQILNLLKD 154 (268)
T ss_pred HHHHhhCC-cEEEecCchhhcchhHHHHHHHHHHH
Confidence 34444444 799999977 4466666666665543
No 457
>PRK13764 ATPase; Provisional
Probab=97.15 E-value=0.00089 Score=63.17 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=26.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEe
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRI 51 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 51 (287)
+++++||||+||||++++++..+...+..+.++
T Consensus 259 ~ILIsG~TGSGKTTll~AL~~~i~~~~riV~Ti 291 (602)
T PRK13764 259 GILIAGAPGAGKSTFAQALAEFYADMGKIVKTM 291 (602)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEE
Confidence 699999999999999999999986544444344
No 458
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.15 E-value=0.0017 Score=52.26 Aligned_cols=37 Identities=27% Similarity=0.324 Sum_probs=29.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
.+++.|++|+|||++++.|+..+...+...+.++...
T Consensus 20 ~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~ 56 (184)
T TIGR00455 20 VIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN 56 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH
Confidence 6999999999999999999999854444455555443
No 459
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.15 E-value=0.00048 Score=56.59 Aligned_cols=30 Identities=27% Similarity=0.649 Sum_probs=24.7
Q ss_pred CCCCCCCcEEEEEeccCCChHHHHHHHHHHH
Q 047225 10 IRDPNRPISSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 10 ~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 40 (287)
...|+++. .++|+||+|+||||+++.|.+.
T Consensus 7 ~~~~~~~~-~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 7 FNKPAKPL-LVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cCCCCCCe-EEEEECcCCCCHHHHHHHHHhc
Confidence 34566665 6999999999999999999765
No 460
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.13 E-value=0.002 Score=56.16 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=29.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
..+.|.|++|+||||++..++..+...+..+..+++.
T Consensus 35 ~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D 71 (300)
T TIGR00750 35 HRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVD 71 (300)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3699999999999999999999886555666555544
No 461
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.0012 Score=62.43 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=24.3
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
|.-++.|+||+|+||||++..|-+.+.+.
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~Pt 521 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPT 521 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 33479999999999999999998887554
No 462
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.00035 Score=56.20 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=22.3
Q ss_pred EEEeccCCChHHHHHHHHHHHhcC
Q 047225 20 FLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
++|+|+||+||||+|+.|++.+..
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 899999999999999999999944
No 463
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=97.12 E-value=0.0042 Score=54.96 Aligned_cols=94 Identities=30% Similarity=0.446 Sum_probs=54.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEec-cccccccc-chhhhhCCC---CCCCcccchhhHHHHHHhCCcEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRID-MSEYMEKH-TVSKFFGSP---PGYVGFENGGQLTEAVRHRPHSV 92 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i 92 (287)
.++++.|++|+|||++.+++...+... ..++.+. ..++.... ....+.... .+..+.+....+...++..| ..
T Consensus 179 ~~ili~G~tGsGKTTll~al~~~i~~~-~riv~iEd~~El~~~~~~~~~l~~r~~~~~g~~~~t~~~ll~~aLR~~P-D~ 256 (340)
T TIGR03819 179 LAFLISGGTGSGKTTLLSALLALVAPD-ERIVLVEDAAELRPDHPHVVRLEARPANVEGAGAVTLTDLVRQALRMRP-DR 256 (340)
T ss_pred CeEEEECCCCCCHHHHHHHHHccCCCC-CcEEEECCcceecCCCCCeeeEEeccccccCcCccCHHHHHHHHhccCC-Ce
Confidence 379999999999999999999887554 3344443 33332111 111111111 01112222334555666655 79
Q ss_pred EEEcCcccccHHHHHHHHHhhcCc
Q 047225 93 ILFDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 93 l~iDeid~~~~~~~~~L~~~l~~~ 116 (287)
+++.|+-. ++... +++.+..|
T Consensus 257 IivGEiRg--~Ea~~-~l~a~~tG 277 (340)
T TIGR03819 257 IVVGEVRG--AEVVD-LLAALNTG 277 (340)
T ss_pred EEEeCcCc--HHHHH-HHHHHHcC
Confidence 99999994 45544 46777765
No 464
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.12 E-value=0.0014 Score=56.08 Aligned_cols=67 Identities=13% Similarity=0.284 Sum_probs=53.4
Q ss_pred CChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 167 FRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
+.++|+||+ ..+.+.|++.+++..++++.+... ..+. ...+.++++++++|+..+. ++.|++++ .++
T Consensus 23 vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~-~~~~--~~~~~i~~~al~~ia~~a~------GDaR~aLN-~LE 89 (300)
T PRK14700 23 LNDALVSRL-FILRLKRLSLVATQKLIEKALSQD-EVLA--KHKFKIDDGLYNAMHNYNE------GDCRKILN-LLE 89 (300)
T ss_pred ecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhh-hccC--CcCCCcCHHHHHHHHHhcC------CHHHHHHH-HHH
Confidence 568999999 999999999999999999988752 1121 2247899999999999865 57888877 444
No 465
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.11 E-value=0.0015 Score=53.10 Aligned_cols=29 Identities=38% Similarity=0.509 Sum_probs=24.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHh--cCCCCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEY--FGSKEA 47 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l--~~~~~~ 47 (287)
.+.|.||+|+||||+.+.|+..+ ......
T Consensus 37 ~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~ 67 (194)
T cd03213 37 LTAIMGPSGAGKSTLLNALAGRRTGLGVSGE 67 (194)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCceE
Confidence 69999999999999999999887 544333
No 466
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.11 E-value=0.00095 Score=57.52 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=31.2
Q ss_pred CCCCcEEEEEeccCCChHHHHHHHHHHHhc--CCCCceEEecccccc
Q 047225 13 PNRPISSFLFTGPTGVGKTELANALAFEYF--GSKEAMVRIDMSEYM 57 (287)
Q Consensus 13 ~~~~~~~ill~Gp~GtGKT~la~~la~~l~--~~~~~~~~~~~~~~~ 57 (287)
++.|. .+.+.||+|+||||+++.|...+. +....+..+.+..+.
T Consensus 59 ~~~p~-IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 59 AKIPY-IISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCCE-EEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 45565 699999999999999999988874 223344445554444
No 467
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.09 E-value=0.0007 Score=55.60 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=22.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|.||+|+||||+++.|+..+.
T Consensus 8 vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999874
No 468
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.09 E-value=0.00055 Score=57.48 Aligned_cols=37 Identities=22% Similarity=0.347 Sum_probs=27.1
Q ss_pred EeccCCChHHHHHHHHHHHhcCCCCceEEeccccccc
Q 047225 22 FTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYME 58 (287)
Q Consensus 22 l~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 58 (287)
++||+|+||||+++.+.+.+...+.+...+|+..-.+
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~ 37 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVE 37 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhc
Confidence 4799999999999999999977777888888765443
No 469
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.011 Score=52.43 Aligned_cols=32 Identities=34% Similarity=0.733 Sum_probs=24.7
Q ss_pred CCCCCCCcEEEEEeccCCChHH-HHHHHHHHHh
Q 047225 10 IRDPNRPISSFLFTGPTGVGKT-ELANALAFEY 41 (287)
Q Consensus 10 ~~~~~~~~~~ill~Gp~GtGKT-~la~~la~~l 41 (287)
..++..|...++|+|++||||| +|+++++-..
T Consensus 172 ~~d~~~P~~r~vL~Ge~GtGKSiaL~qa~h~a~ 204 (461)
T KOG3928|consen 172 LVDPMHPVKRFVLDGEPGTGKSIALAQAVHYAA 204 (461)
T ss_pred hccccCcceEEEEeCCCCCchhhHHHHHHHHHh
Confidence 3455677778999999999999 5666666655
No 470
>PTZ00293 thymidine kinase; Provisional
Probab=97.08 E-value=0.0042 Score=50.80 Aligned_cols=93 Identities=18% Similarity=0.151 Sum_probs=48.3
Q ss_pred EEEEeccCCChHHH-HHHHHHHHhcCCCCceEEeccc---ccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTE-LANALAFEYFGSKEAMVRIDMS---EYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~-la~~la~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
.-+++||-++|||+ |.+.+.+.... +.+...+... .+.....+....|.............+.+.+ .+..+|+
T Consensus 6 i~vi~GpMfSGKTteLLr~i~~y~~a-g~kv~~~kp~~DtR~~~~~~I~Sh~g~~~~a~~v~~~~e~~~~~--~~~dvI~ 82 (211)
T PTZ00293 6 ISVIIGPMFSGKTTELMRLVKRFTYS-EKKCVVIKYSKDTRYSDEQNISSHDKQMLKAIKVSKLKEVLETA--KNYDVIA 82 (211)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHc-CCceEEEEecccccCCCCCcEEecCCCcceeEEcCCHHHHHHhc--cCCCEEE
Confidence 36789999999998 99988776533 3344433322 2201111111111111111111222333333 3446999
Q ss_pred EcCcccccHHHHHHHHHhhcC
Q 047225 95 FDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~ 115 (287)
|||+..++ ++......+.+.
T Consensus 83 IDEaQFf~-~i~~~~~~l~~~ 102 (211)
T PTZ00293 83 IDEGQFFP-DLVEFSEAAANL 102 (211)
T ss_pred EEchHhhH-hHHHHHHHHHHC
Confidence 99999985 455555555443
No 471
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.08 E-value=0.00069 Score=56.21 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=28.4
Q ss_pred EEEeccCCChHHHHHHHHHHHhcC--CCCceEEecccccc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFG--SKEAMVRIDMSEYM 57 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~--~~~~~~~~~~~~~~ 57 (287)
+.|.||+|+||||+++.|+..+.. .+..+..+.+..+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 578999999999999999998843 23445555555543
No 472
>PRK04040 adenylate kinase; Provisional
Probab=97.08 E-value=0.00068 Score=54.82 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=22.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.++++|+|||||||+++.+++.+.
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 699999999999999999999983
No 473
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.08 E-value=0.00056 Score=56.35 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.9
Q ss_pred EEEeccCCChHHHHHHHHHHHh
Q 047225 20 FLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l 41 (287)
++++||||+||||+++.|++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999887
No 474
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.07 E-value=0.0019 Score=64.90 Aligned_cols=92 Identities=13% Similarity=0.079 Sum_probs=54.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHH----HHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEA----VRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~ 94 (287)
..++.|++|||||++.+.+.......+..++-.-.+.-.. ..+....|. .+.+....+... -......+|+
T Consensus 399 ~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA-~~L~e~~Gi----~a~TIas~ll~~~~~~~~l~~~~vlV 473 (1102)
T PRK13826 399 IAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAA-EGLEKEAGI----QSRTLSSWELRWNQGRDQLDNKTVFV 473 (1102)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHH-HHHHHhhCC----CeeeHHHHHhhhccCccCCCCCcEEE
Confidence 6899999999999999999887755455554433321111 111111111 111111111111 0112346999
Q ss_pred EcCcccccHHHHHHHHHhhcC
Q 047225 95 FDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~ 115 (287)
|||+..++......|++.++.
T Consensus 474 IDEAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 474 LDEAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred EECcccCCHHHHHHHHHHHHh
Confidence 999999999999988888763
No 475
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.06 E-value=0.0037 Score=49.67 Aligned_cols=25 Identities=44% Similarity=0.565 Sum_probs=21.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
+++|.+|+|+|||.++-.++..+..
T Consensus 27 ~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 27 RVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCcChhhhhhhhcccc
Confidence 6999999999999999877666644
No 476
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.05 E-value=0.0093 Score=47.25 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=26.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEe
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRI 51 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 51 (287)
-+.+++++|.|||++|-.++-+....+.++..+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 588999999999999999998886666666433
No 477
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.0032 Score=50.39 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=24.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEA 47 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~ 47 (287)
.+.|.||.|+||||+++.|+..+......
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 56 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLEEPDSGS 56 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 68899999999999999999877544333
No 478
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.05 E-value=0.00075 Score=55.79 Aligned_cols=23 Identities=35% Similarity=0.645 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++||||+||||+++.|++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 479
>PRK09354 recA recombinase A; Provisional
Probab=97.04 E-value=0.0047 Score=54.50 Aligned_cols=82 Identities=23% Similarity=0.214 Sum_probs=50.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhC--------CCCCCCcccchhhHHHHHHhCCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFG--------SPPGYVGFENGGQLTEAVRHRPH 90 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 90 (287)
.+.++||+|||||+++-.++......+...++++.....+.. ....+| ..+. .+-.....+...+++...
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~-~a~~lGvdld~lli~qp~-~~Eq~l~i~~~li~s~~~ 139 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV-YAKKLGVDIDNLLVSQPD-TGEQALEIADTLVRSGAV 139 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH-HHHHcCCCHHHeEEecCC-CHHHHHHHHHHHhhcCCC
Confidence 688999999999999988877765667788888886544331 111111 1111 110111122234455566
Q ss_pred EEEEEcCccccc
Q 047225 91 SVILFDEIEKAH 102 (287)
Q Consensus 91 ~il~iDeid~~~ 102 (287)
.+|+||-+-.+.
T Consensus 140 ~lIVIDSvaaL~ 151 (349)
T PRK09354 140 DLIVVDSVAALV 151 (349)
T ss_pred CEEEEeChhhhc
Confidence 899999887554
No 480
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.04 E-value=0.0022 Score=53.77 Aligned_cols=94 Identities=24% Similarity=0.448 Sum_probs=55.5
Q ss_pred EEEEEeccCCChHHHHH-HHHHHHhcCCCCceEEe-cccccccccchhhhhCCCCCCCcccch---hhHHHHHHhCCcEE
Q 047225 18 SSFLFTGPTGVGKTELA-NALAFEYFGSKEAMVRI-DMSEYMEKHTVSKFFGSPPGYVGFENG---GQLTEAVRHRPHSV 92 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la-~~la~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i 92 (287)
+-++++|++|+||||.. ..+..+-..+..+++++ |.-+|.....-.-.. ...+|.+-. ..+...++..| ++
T Consensus 128 GLviiVGaTGSGKSTtmAaMi~yRN~~s~gHIiTIEDPIEfih~h~~CIvT---QREvGvDTesw~~AlkNtlRQap-Dv 203 (375)
T COG5008 128 GLVIIVGATGSGKSTTMAAMIGYRNKNSTGHIITIEDPIEFIHKHKRCIVT---QREVGVDTESWEVALKNTLRQAP-DV 203 (375)
T ss_pred ceEEEECCCCCCchhhHHHHhcccccCCCCceEEecChHHHHhcccceeEE---eeeeccchHHHHHHHHHHHhcCC-Ce
Confidence 46999999999998654 44444434444566655 334443321111000 111232221 23556777766 79
Q ss_pred EEEcCcccccHHHHHHHHHhhcCce
Q 047225 93 ILFDEIEKAHRDVLNVMLQLLDDGR 117 (287)
Q Consensus 93 l~iDeid~~~~~~~~~L~~~l~~~~ 117 (287)
++|-|+- +.+..+.-..+.++|.
T Consensus 204 I~IGEvR--sretMeyAi~fAeTGH 226 (375)
T COG5008 204 ILIGEVR--SRETMEYAIQFAETGH 226 (375)
T ss_pred EEEeecc--cHhHHHHHHHHHhcCc
Confidence 9999997 6677777788888874
No 481
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.04 E-value=0.0048 Score=49.24 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=24.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCce
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAM 48 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 48 (287)
-++++||+|.||||+.+.|.....+....+
T Consensus 30 f~fl~GpSGAGKSTllkLi~~~e~pt~G~i 59 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHhhhcCCCceE
Confidence 489999999999999999999875554433
No 482
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.03 E-value=0.0019 Score=56.76 Aligned_cols=39 Identities=21% Similarity=0.376 Sum_probs=29.9
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
+++. .+.|.|+||+||||++..+...+...+..+..+..
T Consensus 54 ~~~~-~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~ 92 (332)
T PRK09435 54 GNAL-RIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAV 92 (332)
T ss_pred CCcE-EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 4444 69999999999999999999988655555554443
No 483
>PRK15453 phosphoribulokinase; Provisional
Probab=97.02 E-value=0.0011 Score=56.38 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=31.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM 57 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 57 (287)
.+.+.|+||+||||+++.+++.+...+.....++...|.
T Consensus 7 iI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh 45 (290)
T PRK15453 7 IIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFH 45 (290)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccc
Confidence 699999999999999999999885444455566666555
No 484
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.02 E-value=0.00057 Score=53.83 Aligned_cols=21 Identities=43% Similarity=0.556 Sum_probs=18.2
Q ss_pred EEEeccCCChHHHHHHHHHHH
Q 047225 20 FLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~ 40 (287)
|+|+|++|||||||++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999988
No 485
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.02 E-value=0.00071 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=22.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.++|.|+.|+|||++++.+++.+.
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 799999999999999999999984
No 486
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.02 E-value=0.0006 Score=54.53 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+++.||+|+||||+++.|+..+.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999874
No 487
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.01 E-value=0.0012 Score=56.62 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=54.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc--cc---hhhhhCCC--CCCCcccchhhHHH---HHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK--HT---VSKFFGSP--PGYVGFENGGQLTE---AVRH 87 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~--~~~~~~~~~~~~~~---~~~~ 87 (287)
..++|+||+|+||||++..||..+...+..+..+++..+... .. .....+.+ ....+.+......+ ....
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~ 152 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA 152 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 379999999999999999999888665666767776654321 11 11111110 00011111112222 2234
Q ss_pred CCcEEEEEcCcccccH--HHHHHHHHhh
Q 047225 88 RPHSVILFDEIEKAHR--DVLNVMLQLL 113 (287)
Q Consensus 88 ~~~~il~iDeid~~~~--~~~~~L~~~l 113 (287)
..+.+++||=..+.+. ..+..|..+.
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~ 180 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIK 180 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHH
Confidence 5567999998877653 3444455444
No 488
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.0054 Score=56.44 Aligned_cols=86 Identities=15% Similarity=0.252 Sum_probs=46.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC-----CCceEEecccc-cccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS-----KEAMVRIDMSE-YMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSV 92 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 92 (287)
.+.++||||||||||.+.|-+.+... ..++..+..-. ..+ ++. .....+.+.+..+-...-+
T Consensus 71 IvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiT------flE------cp~Dl~~miDvaKIaDLVl 138 (1077)
T COG5192 71 IVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRIT------FLE------CPSDLHQMIDVAKIADLVL 138 (1077)
T ss_pred EEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEE------EEe------ChHHHHHHHhHHHhhheeE
Confidence 46799999999999999998876211 11221111100 000 000 0011134444444445457
Q ss_pred EEEcCcccccHHHHHHHHHhhcCc
Q 047225 93 ILFDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 93 l~iDeid~~~~~~~~~L~~~l~~~ 116 (287)
|+||.--.+..+..+.|.-++..|
T Consensus 139 LlIdgnfGfEMETmEFLnil~~HG 162 (1077)
T COG5192 139 LLIDGNFGFEMETMEFLNILISHG 162 (1077)
T ss_pred EEeccccCceehHHHHHHHHhhcC
Confidence 777876666666666665555543
No 489
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.99 E-value=0.00053 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||+|+||||+++.|+..+
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999998876
No 490
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.98 E-value=0.0006 Score=60.04 Aligned_cols=28 Identities=32% Similarity=0.291 Sum_probs=23.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKE 46 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~ 46 (287)
.+.|.||+||||||+.|+||....+++.
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGfe~p~~G 60 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGFEQPSSG 60 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4889999999999999999988755443
No 491
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.98 E-value=0.00083 Score=54.96 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||+|+|||++++.|+..+
T Consensus 7 ~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 7 LIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 69999999999999999999986
No 492
>PRK14527 adenylate kinase; Provisional
Probab=96.98 E-value=0.00079 Score=54.53 Aligned_cols=23 Identities=43% Similarity=0.663 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++||||+||||+++.|++.+
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999887
No 493
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.97 E-value=0.0024 Score=58.81 Aligned_cols=84 Identities=18% Similarity=0.258 Sum_probs=51.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccch-hhhhCCCCC---CCcccchhhHHHHHHhCCcEEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTV-SKFFGSPPG---YVGFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~il 93 (287)
..+++.|+||+|||+++..++..+...+.+.++++..+....... ...++.... .........+.+.+......++
T Consensus 95 svilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~~~v 174 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENPQAC 174 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCCcEE
Confidence 369999999999999999998877555567777776543221100 111221100 0111223456666766667899
Q ss_pred EEcCcccc
Q 047225 94 LFDEIEKA 101 (287)
Q Consensus 94 ~iDeid~~ 101 (287)
+||.+..+
T Consensus 175 VIDSIq~l 182 (454)
T TIGR00416 175 VIDSIQTL 182 (454)
T ss_pred EEecchhh
Confidence 99998754
No 494
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.96 E-value=0.0012 Score=42.68 Aligned_cols=26 Identities=38% Similarity=0.696 Sum_probs=23.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
..+|+||.|+||||+..++.-.+.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 69999999999999999999888654
No 495
>PRK05439 pantothenate kinase; Provisional
Probab=96.96 E-value=0.0014 Score=57.05 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=33.4
Q ss_pred CCCCCcEEEEEeccCCChHHHHHHHHHHHhcC--CCCceEEecccccc
Q 047225 12 DPNRPISSFLFTGPTGVGKTELANALAFEYFG--SKEAMVRIDMSEYM 57 (287)
Q Consensus 12 ~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~--~~~~~~~~~~~~~~ 57 (287)
..++|. .|.+.|+||+||||+++.|+..+.. .+.....+.+.++.
T Consensus 82 ~~~~~~-iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 82 GQKVPF-IIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCCE-EEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 445665 6999999999999999999998743 23445566666655
No 496
>PLN02165 adenylate isopentenyltransferase
Probab=96.96 E-value=0.0009 Score=58.45 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=22.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||+|+|||+++..||..+
T Consensus 45 iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 45 VVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHHc
Confidence 69999999999999999999998
No 497
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.94 E-value=0.0041 Score=48.98 Aligned_cols=24 Identities=29% Similarity=0.553 Sum_probs=21.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
..+++||.|+|||++.++++-.+.
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 699999999999999999877663
No 498
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=96.94 E-value=0.0039 Score=58.31 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=22.4
Q ss_pred EEEEeccCCChHHH-HHHHHHHHhcCCCCc
Q 047225 19 SFLFTGPTGVGKTE-LANALAFEYFGSKEA 47 (287)
Q Consensus 19 ~ill~Gp~GtGKT~-la~~la~~l~~~~~~ 47 (287)
.+++.|++|||||| +.+.|++..+.....
T Consensus 68 vlIviGeTGsGKSTQipQyL~eaG~~~~g~ 97 (674)
T KOG0922|consen 68 VLIVIGETGSGKSTQIPQYLAEAGFASSGK 97 (674)
T ss_pred EEEEEcCCCCCccccHhHHHHhcccccCCc
Confidence 69999999999987 777777776544433
No 499
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.00066 Score=59.43 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=23.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKE 46 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~ 46 (287)
.+.|+||+||||||+.+.||.....++.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe~~~~G 58 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLEEPTSG 58 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 5899999999999999999988754433
No 500
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.94 E-value=0.02 Score=46.06 Aligned_cols=23 Identities=39% Similarity=0.681 Sum_probs=21.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||+|+||+++++.|.+..
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 59999999999999999998886
Done!