Query 047225
Match_columns 287
No_of_seqs 131 out of 1631
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 15:38:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047225.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047225hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcw_A Chaperone protein CLPB; 100.0 1.8E-34 6.2E-39 250.9 30.3 274 3-276 33-308 (311)
2 1r6b_X CLPA protein; AAA+, N-t 100.0 5.2E-34 1.8E-38 275.7 27.8 270 3-276 474-747 (758)
3 1qvr_A CLPB protein; coiled co 100.0 2.2E-33 7.4E-38 274.1 28.5 273 3-275 574-848 (854)
4 3pxi_A Negative regulator of g 100.0 5.7E-32 2E-36 261.3 27.7 249 2-276 506-754 (758)
5 3hws_A ATP-dependent CLP prote 99.9 2.6E-23 8.9E-28 184.5 16.2 219 18-250 52-326 (363)
6 1um8_A ATP-dependent CLP prote 99.9 1.8E-22 6E-27 180.0 18.0 233 18-268 73-357 (376)
7 1ofh_A ATP-dependent HSL prote 99.9 4E-22 1.4E-26 172.6 18.3 214 19-271 52-294 (310)
8 1ojl_A Transcriptional regulat 99.9 8.6E-23 2.9E-27 176.7 11.9 203 19-244 27-233 (304)
9 2bjv_A PSP operon transcriptio 99.9 2.6E-22 8.7E-27 170.4 13.3 202 19-244 31-238 (265)
10 1ny5_A Transcriptional regulat 99.8 1.6E-20 5.3E-25 167.7 14.2 203 19-244 162-368 (387)
11 3dzd_A Transcriptional regulat 99.8 4.4E-20 1.5E-24 163.6 14.7 202 19-244 154-359 (368)
12 3syl_A Protein CBBX; photosynt 99.8 1.8E-19 6.2E-24 156.0 15.1 185 16-252 66-268 (309)
13 3m6a_A ATP-dependent protease 99.8 6.2E-19 2.1E-23 163.7 18.0 199 19-250 110-319 (543)
14 1g41_A Heat shock protein HSLU 99.8 2.3E-18 7.9E-23 154.5 20.7 149 89-267 250-424 (444)
15 3pfi_A Holliday junction ATP-d 99.8 2.1E-18 7.3E-23 151.2 19.9 170 17-244 55-232 (338)
16 4b4t_J 26S protease regulatory 99.8 8.2E-19 2.8E-23 155.0 17.0 170 19-247 184-370 (405)
17 3eie_A Vacuolar protein sortin 99.8 2.1E-18 7.3E-23 150.4 17.2 183 14-252 48-241 (322)
18 4b4t_I 26S protease regulatory 99.8 1.6E-18 5.6E-23 153.6 15.1 168 19-247 218-404 (437)
19 2qp9_X Vacuolar protein sortin 99.8 5.7E-18 1.9E-22 149.5 18.2 178 18-251 85-273 (355)
20 4b4t_M 26S protease regulatory 99.8 2.4E-18 8.1E-23 154.2 15.9 169 19-248 217-404 (434)
21 1xwi_A SKD1 protein; VPS4B, AA 99.8 1.5E-17 5.1E-22 144.9 19.5 180 18-252 46-236 (322)
22 4b4t_K 26S protease regulatory 99.8 6.7E-18 2.3E-22 151.1 17.5 168 19-247 208-395 (428)
23 4b4t_H 26S protease regulatory 99.8 8.1E-18 2.8E-22 150.5 17.4 168 19-247 245-431 (467)
24 4b4t_L 26S protease subunit RP 99.8 9.5E-18 3.2E-22 150.4 16.2 169 19-247 217-403 (437)
25 2zan_A Vacuolar protein sortin 99.8 3.8E-17 1.3E-21 148.4 19.7 180 18-252 168-358 (444)
26 1hqc_A RUVB; extended AAA-ATPa 99.7 2.8E-17 9.7E-22 143.1 15.7 166 19-242 40-214 (324)
27 3te6_A Regulatory protein SIR3 99.7 1.5E-17 5E-22 143.5 11.8 219 19-270 47-309 (318)
28 1g8p_A Magnesium-chelatase 38 99.7 8.9E-17 3E-21 141.4 16.8 133 89-244 144-300 (350)
29 3pvs_A Replication-associated 99.7 3.7E-17 1.3E-21 148.1 14.3 170 18-244 51-220 (447)
30 3cf0_A Transitional endoplasmi 99.7 1.3E-16 4.6E-21 137.7 16.9 176 19-252 51-242 (301)
31 3uk6_A RUVB-like 2; hexameric 99.7 4.9E-17 1.7E-21 144.1 14.1 192 18-246 71-310 (368)
32 3vfd_A Spastin; ATPase, microt 99.7 1.3E-16 4.4E-21 142.6 16.5 175 18-247 149-334 (389)
33 3d8b_A Fidgetin-like protein 1 99.7 2.9E-16 9.8E-21 138.8 18.5 175 19-248 119-304 (357)
34 1l8q_A Chromosomal replication 99.7 4.2E-17 1.4E-21 142.2 11.8 186 5-245 25-214 (324)
35 3u61_B DNA polymerase accessor 99.7 2.4E-16 8.1E-21 137.4 15.7 162 19-240 50-217 (324)
36 2qz4_A Paraplegin; AAA+, SPG7, 99.7 1.6E-16 5.6E-21 134.0 13.6 174 19-246 41-229 (262)
37 3h4m_A Proteasome-activating n 99.7 2.9E-16 1E-20 134.3 15.3 173 19-246 53-238 (285)
38 3b9p_A CG5977-PA, isoform A; A 99.7 6.4E-16 2.2E-20 133.0 17.2 175 19-247 56-241 (297)
39 2r44_A Uncharacterized protein 99.7 2.6E-16 8.8E-21 137.6 14.7 172 19-224 48-238 (331)
40 3n70_A Transport activator; si 99.7 1.6E-17 5.5E-22 128.0 5.6 119 19-185 26-145 (145)
41 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 4.4E-16 1.5E-20 142.4 15.0 201 19-255 43-271 (500)
42 2chg_A Replication factor C sm 99.7 2E-15 6.9E-20 123.5 16.7 162 19-243 40-208 (226)
43 3bos_A Putative DNA replicatio 99.7 4.3E-16 1.5E-20 129.4 12.0 167 19-246 54-224 (242)
44 2z4s_A Chromosomal replication 99.7 2.8E-16 9.7E-21 142.4 11.1 188 6-246 120-313 (440)
45 3hu3_A Transitional endoplasmi 99.7 6.2E-16 2.1E-20 141.5 13.2 172 19-248 240-424 (489)
46 3cf2_A TER ATPase, transitiona 99.7 8.9E-16 3E-20 146.8 14.5 175 19-251 240-427 (806)
47 1lv7_A FTSH; alpha/beta domain 99.7 3E-15 1E-19 126.1 16.2 170 19-247 47-233 (257)
48 3t15_A Ribulose bisphosphate c 99.6 9.7E-16 3.3E-20 131.7 12.4 145 12-198 32-199 (293)
49 2v1u_A Cell division control p 99.6 1.5E-15 5E-20 135.0 13.7 192 19-244 46-254 (387)
50 1sxj_D Activator 1 41 kDa subu 99.6 7.4E-16 2.5E-20 135.5 11.5 190 3-242 46-238 (353)
51 2chq_A Replication factor C sm 99.6 2.8E-15 9.7E-20 129.8 14.2 175 3-242 26-207 (319)
52 3cf2_A TER ATPase, transitiona 99.6 3.9E-16 1.3E-20 149.3 9.4 175 19-251 513-703 (806)
53 3co5_A Putative two-component 99.6 3.7E-17 1.3E-21 125.6 1.5 114 19-185 29-143 (143)
54 1njg_A DNA polymerase III subu 99.6 3E-15 1E-19 124.1 13.0 173 19-242 47-231 (250)
55 2ce7_A Cell division protein F 99.6 9.3E-15 3.2E-19 132.8 17.1 169 19-246 51-236 (476)
56 1fnn_A CDC6P, cell division co 99.6 2.3E-14 8E-19 127.4 19.0 191 19-244 46-252 (389)
57 1iqp_A RFCS; clamp loader, ext 99.6 3.4E-15 1.2E-19 129.8 13.2 160 19-241 48-214 (327)
58 2qby_B CDC6 homolog 3, cell di 99.6 7.7E-15 2.6E-19 130.5 14.2 184 19-243 47-249 (384)
59 3k1j_A LON protease, ATP-depen 99.6 3.9E-15 1.3E-19 140.1 12.8 133 85-243 197-352 (604)
60 3f9v_A Minichromosome maintena 99.6 6.3E-16 2.2E-20 144.8 6.7 202 19-244 329-565 (595)
61 1d2n_A N-ethylmaleimide-sensit 99.6 1.3E-14 4.4E-19 123.3 13.2 171 15-243 62-246 (272)
62 1sxj_B Activator 1 37 kDa subu 99.6 2.5E-14 8.6E-19 124.0 15.1 161 19-243 44-213 (323)
63 1jr3_A DNA polymerase III subu 99.6 3E-14 1E-18 126.2 15.4 176 19-243 40-225 (373)
64 1sxj_E Activator 1 40 kDa subu 99.6 6.7E-14 2.3E-18 123.2 16.8 104 89-240 134-238 (354)
65 1in4_A RUVB, holliday junction 99.6 1.9E-13 6.5E-18 119.5 19.1 169 18-244 52-228 (334)
66 2x8a_A Nuclear valosin-contain 99.6 6.6E-14 2.2E-18 119.0 15.7 179 19-251 46-238 (274)
67 2r62_A Cell division protease 99.6 6E-16 2.1E-20 131.2 3.0 169 19-244 46-231 (268)
68 2c9o_A RUVB-like 1; hexameric 99.6 8E-14 2.8E-18 127.0 17.1 102 91-225 297-398 (456)
69 1a5t_A Delta prime, HOLB; zinc 99.6 1.1E-13 3.6E-18 121.2 16.9 156 19-225 26-194 (334)
70 3pxg_A Negative regulator of g 99.6 1E-14 3.5E-19 133.2 9.9 153 18-225 202-361 (468)
71 2qby_A CDC6 homolog 1, cell di 99.5 5.6E-14 1.9E-18 124.6 13.8 188 19-244 47-250 (386)
72 1ixz_A ATP-dependent metallopr 99.5 1.4E-13 4.9E-18 115.6 15.2 170 19-247 51-237 (254)
73 1sxj_C Activator 1 40 kDa subu 99.5 2.4E-14 8.2E-19 125.6 10.4 147 19-225 48-201 (340)
74 1sxj_A Activator 1 95 kDa subu 99.5 6.4E-14 2.2E-18 129.5 11.8 168 18-240 78-253 (516)
75 1iy2_A ATP-dependent metallopr 99.5 4.9E-13 1.7E-17 113.9 16.0 169 19-246 75-260 (278)
76 2dhr_A FTSH; AAA+ protein, hex 99.5 5.6E-14 1.9E-18 128.4 10.3 166 19-245 66-250 (499)
77 1jbk_A CLPB protein; beta barr 99.5 6.4E-14 2.2E-18 111.8 7.9 134 19-193 45-194 (195)
78 2gno_A DNA polymerase III, gam 99.5 4.2E-13 1.4E-17 115.6 13.5 140 3-197 6-152 (305)
79 1qvr_A CLPB protein; coiled co 99.5 3.2E-13 1.1E-17 131.9 13.8 158 19-225 193-368 (854)
80 4akg_A Glutathione S-transfera 99.5 2.9E-13 1E-17 142.9 12.5 203 19-244 1269-1487(2695)
81 1ypw_A Transitional endoplasmi 99.4 4.3E-15 1.5E-19 143.8 -1.5 174 18-249 512-701 (806)
82 3pxi_A Negative regulator of g 99.4 3.5E-13 1.2E-17 130.1 10.1 153 18-225 202-361 (758)
83 3vkg_A Dynein heavy chain, cyt 99.4 9.6E-14 3.3E-18 147.3 6.4 200 19-244 1306-1525(3245)
84 1r6b_X CLPA protein; AAA+, N-t 99.4 9.5E-13 3.2E-17 127.2 12.1 158 18-225 208-385 (758)
85 2p65_A Hypothetical protein PF 99.4 5.4E-13 1.9E-17 106.0 8.1 126 19-185 45-187 (187)
86 3f8t_A Predicted ATPase involv 99.4 3.5E-12 1.2E-16 114.1 11.2 179 19-224 241-426 (506)
87 4akg_A Glutathione S-transfera 99.3 2.2E-11 7.5E-16 128.9 18.0 135 19-194 647-790 (2695)
88 3vkg_A Dynein heavy chain, cyt 99.3 1.4E-10 4.7E-15 123.7 18.6 173 20-240 607-794 (3245)
89 1w5s_A Origin recognition comp 99.3 7.2E-11 2.5E-15 105.7 13.9 194 19-243 52-270 (412)
90 1ypw_A Transitional endoplasmi 99.2 4.5E-11 1.5E-15 115.8 12.8 171 19-247 240-423 (806)
91 3ec2_A DNA replication protein 99.1 1.3E-10 4.3E-15 92.3 8.2 104 19-143 40-146 (180)
92 2kjq_A DNAA-related protein; s 99.1 1.5E-10 5.1E-15 89.1 7.6 91 19-143 38-128 (149)
93 1jr3_D DNA polymerase III, del 99.0 7.3E-09 2.5E-13 90.6 13.7 165 18-243 19-189 (343)
94 2w58_A DNAI, primosome compone 99.0 2.4E-10 8E-15 92.4 2.9 105 19-144 56-163 (202)
95 1tue_A Replication protein E1; 98.9 1.8E-09 6.2E-14 86.4 6.5 115 19-182 60-177 (212)
96 2qgz_A Helicase loader, putati 98.8 1.9E-09 6.7E-14 92.9 3.3 106 18-144 153-262 (308)
97 2qen_A Walker-type ATPase; unk 98.8 5.6E-08 1.9E-12 84.6 12.4 145 19-197 33-216 (350)
98 1u0j_A DNA replication protein 98.8 3.2E-08 1.1E-12 82.7 10.0 134 18-194 105-248 (267)
99 2fna_A Conserved hypothetical 98.7 1.5E-07 5E-12 82.1 13.0 149 19-198 32-223 (357)
100 2orw_A Thymidine kinase; TMTK, 98.6 6.7E-08 2.3E-12 76.8 7.8 96 19-115 5-102 (184)
101 2b8t_A Thymidine kinase; deoxy 98.5 8.8E-07 3E-11 72.4 10.2 98 18-115 13-115 (223)
102 2r2a_A Uncharacterized protein 98.5 7E-07 2.4E-11 71.7 9.0 131 19-184 7-153 (199)
103 1ye8_A Protein THEP1, hypothet 98.3 3.9E-06 1.3E-10 66.2 10.5 23 19-41 2-24 (178)
104 2vhj_A Ntpase P4, P4; non- hyd 98.2 2.8E-06 9.6E-11 72.8 7.9 70 19-103 125-196 (331)
105 2r8r_A Sensor protein; KDPD, P 98.2 1.2E-05 4.2E-10 65.4 10.7 149 18-192 7-172 (228)
106 1xx6_A Thymidine kinase; NESG, 98.2 4.5E-06 1.5E-10 66.6 7.8 96 19-115 10-107 (191)
107 3jvv_A Twitching mobility prot 98.1 7.4E-06 2.5E-10 71.7 7.5 97 16-116 122-221 (356)
108 2j9r_A Thymidine kinase; TK1, 98.0 1.4E-05 4.8E-10 64.4 8.2 99 16-115 27-127 (214)
109 1w4r_A Thymidine kinase; type 97.9 2.8E-05 9.7E-10 61.7 7.6 92 19-116 22-117 (195)
110 1g5t_A COB(I)alamin adenosyltr 97.9 1.6E-05 5.5E-10 63.2 5.7 35 18-52 29-63 (196)
111 3e1s_A Exodeoxyribonuclease V, 97.8 3E-05 1E-09 72.3 7.4 90 19-115 206-305 (574)
112 2a5y_B CED-4; apoptosis; HET: 97.8 0.00037 1.3E-08 64.6 14.5 85 18-102 153-256 (549)
113 3upu_A ATP-dependent DNA helic 97.8 3.9E-05 1.3E-09 69.6 7.6 94 19-114 47-153 (459)
114 2eyu_A Twitching motility prot 97.8 7.3E-05 2.5E-09 62.5 8.2 93 16-115 24-122 (261)
115 2w0m_A SSO2452; RECA, SSPF, un 97.7 7.2E-05 2.5E-09 60.8 7.5 36 19-54 25-60 (235)
116 3cmu_A Protein RECA, recombina 97.7 4.3E-05 1.5E-09 79.6 6.5 82 19-101 1429-1517(2050)
117 1qhx_A CPT, protein (chloramph 97.6 3.6E-05 1.2E-09 60.1 4.0 33 19-54 5-37 (178)
118 1w36_D RECD, exodeoxyribonucle 97.6 0.00016 5.5E-09 67.8 8.9 24 19-42 166-189 (608)
119 3dm5_A SRP54, signal recogniti 97.6 0.00034 1.2E-08 62.7 10.4 94 18-111 101-206 (443)
120 2ewv_A Twitching motility prot 97.6 0.00013 4.4E-09 64.3 7.3 93 16-115 135-233 (372)
121 1nks_A Adenylate kinase; therm 97.6 5.1E-05 1.7E-09 59.9 4.0 36 19-54 3-38 (194)
122 1knq_A Gluconate kinase; ALFA/ 97.5 8.8E-05 3E-09 57.8 5.2 27 15-41 6-32 (175)
123 3kl4_A SRP54, signal recogniti 97.5 0.00017 5.9E-09 64.5 7.6 40 18-57 98-137 (433)
124 3trf_A Shikimate kinase, SK; a 97.5 5.5E-05 1.9E-09 59.5 4.0 23 19-41 7-29 (185)
125 1z6t_A APAF-1, apoptotic prote 97.5 0.00076 2.6E-08 62.9 12.3 22 18-39 148-169 (591)
126 2cdn_A Adenylate kinase; phosp 97.5 7.2E-05 2.5E-09 59.8 4.6 31 10-41 14-44 (201)
127 3kb2_A SPBC2 prophage-derived 97.5 7.6E-05 2.6E-09 57.8 4.5 23 19-41 3-25 (173)
128 1kht_A Adenylate kinase; phosp 97.5 7.2E-05 2.4E-09 59.0 3.9 36 19-54 5-40 (192)
129 2dr3_A UPF0273 protein PH0284; 97.5 0.00035 1.2E-08 57.3 8.2 37 19-55 25-61 (247)
130 3e2i_A Thymidine kinase; Zn-bi 97.5 0.00025 8.4E-09 57.1 6.8 95 19-115 30-127 (219)
131 3vaa_A Shikimate kinase, SK; s 97.5 7.7E-05 2.6E-09 59.6 3.9 23 19-41 27-49 (199)
132 2rhm_A Putative kinase; P-loop 97.5 9.9E-05 3.4E-09 58.3 4.5 23 19-41 7-29 (193)
133 2fz4_A DNA repair protein RAD2 97.5 0.0004 1.4E-08 57.1 8.2 23 19-41 110-132 (237)
134 2p5t_B PEZT; postsegregational 97.4 0.00013 4.4E-09 60.7 5.2 42 11-56 27-68 (253)
135 2i3b_A HCR-ntpase, human cance 97.4 5.9E-05 2E-09 59.9 3.0 24 19-42 3-26 (189)
136 1gvn_B Zeta; postsegregational 97.4 0.00013 4.5E-09 61.9 5.2 39 13-55 30-68 (287)
137 2iut_A DNA translocase FTSK; n 97.4 0.0025 8.7E-08 58.7 14.0 73 89-193 343-419 (574)
138 1zuh_A Shikimate kinase; alpha 97.4 9.4E-05 3.2E-09 57.2 3.9 23 19-41 9-31 (168)
139 4a74_A DNA repair and recombin 97.4 0.0004 1.4E-08 56.3 7.9 24 18-41 26-49 (231)
140 1via_A Shikimate kinase; struc 97.4 8.4E-05 2.9E-09 58.0 3.2 23 19-41 6-28 (175)
141 2orv_A Thymidine kinase; TP4A 97.4 0.00068 2.3E-08 55.2 8.6 92 19-114 21-113 (234)
142 3hr8_A Protein RECA; alpha and 97.4 0.00031 1.1E-08 61.3 7.0 83 19-102 63-152 (356)
143 2ze6_A Isopentenyl transferase 97.4 0.00015 5E-09 60.4 4.6 31 19-52 3-33 (253)
144 1kag_A SKI, shikimate kinase I 97.4 0.00013 4.4E-09 56.7 3.9 23 19-41 6-28 (173)
145 1y63_A LMAJ004144AAA protein; 97.3 0.00015 5E-09 57.2 4.2 22 19-40 12-33 (184)
146 3uie_A Adenylyl-sulfate kinase 97.3 0.00017 6E-09 57.5 4.7 35 19-53 27-61 (200)
147 2iyv_A Shikimate kinase, SK; t 97.3 0.00013 4.4E-09 57.3 3.7 23 19-41 4-26 (184)
148 2pt7_A CAG-ALFA; ATPase, prote 97.3 0.00028 9.5E-09 61.1 6.0 88 19-112 173-261 (330)
149 1zp6_A Hypothetical protein AT 97.3 0.00016 5.4E-09 57.1 4.1 34 19-55 11-44 (191)
150 3iij_A Coilin-interacting nucl 97.3 0.00012 4.2E-09 57.3 3.3 23 19-41 13-35 (180)
151 1zd8_A GTP:AMP phosphotransfer 97.3 0.00014 4.9E-09 59.3 3.8 23 19-41 9-31 (227)
152 1nlf_A Regulatory protein REPA 97.3 0.0013 4.4E-08 55.3 9.7 24 19-42 32-55 (279)
153 1xp8_A RECA protein, recombina 97.3 0.00098 3.4E-08 58.4 9.2 83 19-102 76-165 (366)
154 3lw7_A Adenylate kinase relate 97.3 0.00015 5.2E-09 56.0 3.6 22 19-41 3-24 (179)
155 2yvu_A Probable adenylyl-sulfa 97.3 0.00026 8.9E-09 55.7 5.0 36 18-53 14-49 (186)
156 2zr9_A Protein RECA, recombina 97.3 0.00038 1.3E-08 60.7 6.4 83 19-102 63-152 (349)
157 1aky_A Adenylate kinase; ATP:A 97.3 0.00017 5.9E-09 58.4 3.9 23 19-41 6-28 (220)
158 2vli_A Antibiotic resistance p 97.3 0.00014 4.8E-09 56.9 3.2 23 19-41 7-29 (183)
159 1tev_A UMP-CMP kinase; ploop, 97.3 0.00019 6.5E-09 56.6 4.0 23 19-41 5-27 (196)
160 3umf_A Adenylate kinase; rossm 97.3 0.00028 9.5E-09 57.2 4.9 33 19-56 31-63 (217)
161 1ukz_A Uridylate kinase; trans 97.3 0.00022 7.6E-09 56.9 4.3 27 14-41 13-39 (203)
162 2c95_A Adenylate kinase 1; tra 97.3 0.00021 7.4E-09 56.5 4.2 23 19-41 11-33 (196)
163 1n0w_A DNA repair protein RAD5 97.3 0.00044 1.5E-08 56.6 6.2 37 19-55 26-68 (243)
164 3t61_A Gluconokinase; PSI-biol 97.2 0.00021 7.3E-09 57.0 4.1 23 19-41 20-42 (202)
165 1e6c_A Shikimate kinase; phosp 97.2 0.00019 6.4E-09 55.7 3.6 23 19-41 4-26 (173)
166 3fb4_A Adenylate kinase; psych 97.2 0.00021 7.1E-09 57.7 4.0 23 19-41 2-24 (216)
167 3dl0_A Adenylate kinase; phosp 97.2 0.00019 6.6E-09 57.9 3.8 23 19-41 2-24 (216)
168 2pez_A Bifunctional 3'-phospho 97.2 0.00027 9.2E-09 55.3 4.4 34 19-52 7-40 (179)
169 3tlx_A Adenylate kinase 2; str 97.2 0.00025 8.4E-09 58.6 4.4 26 15-41 28-53 (243)
170 3cm0_A Adenylate kinase; ATP-b 97.2 0.00025 8.4E-09 55.7 4.2 23 19-41 6-28 (186)
171 3sr0_A Adenylate kinase; phosp 97.2 0.00027 9.4E-09 56.8 4.5 33 19-56 2-34 (206)
172 2pt5_A Shikimate kinase, SK; a 97.2 0.00024 8E-09 54.8 3.9 23 19-41 2-24 (168)
173 2cvh_A DNA repair and recombin 97.2 0.00037 1.3E-08 56.1 5.2 34 19-55 22-55 (220)
174 1u94_A RECA protein, recombina 97.2 0.00058 2E-08 59.7 6.7 83 19-102 65-154 (356)
175 1ak2_A Adenylate kinase isoenz 97.2 0.00028 9.4E-09 57.8 4.3 23 19-41 18-40 (233)
176 1qf9_A UMP/CMP kinase, protein 97.2 0.00032 1.1E-08 55.2 4.5 23 19-41 8-30 (194)
177 1ly1_A Polynucleotide kinase; 97.2 0.00021 7.4E-09 55.6 3.4 22 19-40 4-25 (181)
178 3vkw_A Replicase large subunit 97.2 0.0013 4.6E-08 58.7 8.7 91 17-115 161-260 (446)
179 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.00027 9.3E-09 59.0 4.0 36 19-54 6-41 (260)
180 3cmw_A Protein RECA, recombina 97.2 0.00046 1.6E-08 71.1 6.4 82 19-101 1084-1172(1706)
181 2bwj_A Adenylate kinase 5; pho 97.2 0.00027 9.1E-09 56.1 3.8 23 19-41 14-36 (199)
182 2wwf_A Thymidilate kinase, put 97.2 0.00032 1.1E-08 56.2 4.3 25 19-43 12-36 (212)
183 2pbr_A DTMP kinase, thymidylat 97.1 0.00031 1E-08 55.4 4.0 33 19-51 2-34 (195)
184 3c8u_A Fructokinase; YP_612366 97.1 0.00048 1.6E-08 55.3 5.2 25 18-42 23-47 (208)
185 2plr_A DTMP kinase, probable t 97.1 0.00043 1.5E-08 55.3 4.9 26 19-44 6-31 (213)
186 4eun_A Thermoresistant glucoki 97.1 0.00028 9.7E-09 56.3 3.6 23 19-41 31-53 (200)
187 3tau_A Guanylate kinase, GMP k 97.1 0.00032 1.1E-08 56.4 3.8 24 19-42 10-33 (208)
188 1nn5_A Similar to deoxythymidy 97.1 0.00041 1.4E-08 55.6 4.5 30 19-48 11-40 (215)
189 1e4v_A Adenylate kinase; trans 97.1 0.00035 1.2E-08 56.3 3.9 23 19-41 2-24 (214)
190 3be4_A Adenylate kinase; malar 97.1 0.0003 1E-08 57.0 3.3 23 19-41 7-29 (217)
191 2ius_A DNA translocase FTSK; n 97.1 0.0084 2.9E-07 54.7 13.2 74 89-194 297-374 (512)
192 1rz3_A Hypothetical protein rb 97.1 0.00054 1.8E-08 54.7 4.8 36 19-54 24-59 (201)
193 1zak_A Adenylate kinase; ATP:A 97.1 0.00033 1.1E-08 56.8 3.4 23 19-41 7-29 (222)
194 1kgd_A CASK, peripheral plasma 97.1 0.00041 1.4E-08 54.4 3.9 23 19-41 7-29 (180)
195 3zvl_A Bifunctional polynucleo 97.1 0.0044 1.5E-07 55.3 11.1 23 19-41 260-282 (416)
196 1cke_A CK, MSSA, protein (cyti 97.1 0.00049 1.7E-08 55.8 4.4 23 19-41 7-29 (227)
197 1uj2_A Uridine-cytidine kinase 97.0 0.00052 1.8E-08 56.9 4.7 39 19-57 24-67 (252)
198 1zu4_A FTSY; GTPase, signal re 97.0 0.00085 2.9E-08 57.7 6.0 39 18-56 106-144 (320)
199 3crm_A TRNA delta(2)-isopenten 97.0 0.00047 1.6E-08 59.2 4.2 31 19-52 7-37 (323)
200 2jaq_A Deoxyguanosine kinase; 97.0 0.00039 1.3E-08 55.3 3.6 23 19-41 2-24 (205)
201 3r20_A Cytidylate kinase; stru 97.0 0.00055 1.9E-08 56.1 4.4 23 19-41 11-33 (233)
202 1sq5_A Pantothenate kinase; P- 97.0 0.001 3.5E-08 56.9 6.3 38 19-56 82-121 (308)
203 2if2_A Dephospho-COA kinase; a 97.0 0.00042 1.4E-08 55.3 3.6 22 19-41 3-24 (204)
204 2z0h_A DTMP kinase, thymidylat 97.0 0.00047 1.6E-08 54.5 3.8 31 19-49 2-32 (197)
205 2qor_A Guanylate kinase; phosp 97.0 0.00037 1.3E-08 55.8 3.2 23 19-41 14-36 (204)
206 2v54_A DTMP kinase, thymidylat 97.0 0.00048 1.6E-08 54.8 3.8 23 19-41 6-28 (204)
207 3cmu_A Protein RECA, recombina 97.0 0.002 7E-08 67.3 9.0 82 19-102 1083-1172(2050)
208 3foz_A TRNA delta(2)-isopenten 97.0 0.00064 2.2E-08 57.9 4.5 31 19-52 12-42 (316)
209 1v5w_A DMC1, meiotic recombina 97.0 0.0021 7.1E-08 55.9 7.9 38 18-55 123-166 (343)
210 2bbw_A Adenylate kinase 4, AK4 97.0 0.00047 1.6E-08 56.9 3.6 23 19-41 29-51 (246)
211 3lda_A DNA repair protein RAD5 97.0 0.0021 7E-08 57.0 7.9 37 19-55 180-222 (400)
212 3tr0_A Guanylate kinase, GMP k 96.9 0.00047 1.6E-08 54.9 3.4 23 19-41 9-31 (205)
213 1rj9_A FTSY, signal recognitio 96.9 0.00095 3.3E-08 57.0 5.5 35 19-53 104-138 (304)
214 2xb4_A Adenylate kinase; ATP-b 96.9 0.0007 2.4E-08 55.0 4.4 23 19-41 2-24 (223)
215 3tqc_A Pantothenate kinase; bi 96.9 0.0013 4.3E-08 56.6 6.1 43 13-56 89-133 (321)
216 2yhs_A FTSY, cell division pro 96.9 0.0014 4.7E-08 59.5 6.4 37 18-54 294-330 (503)
217 3io5_A Recombination and repai 96.9 0.00084 2.9E-08 57.3 4.8 84 18-102 29-124 (333)
218 2bdt_A BH3686; alpha-beta prot 96.9 0.00054 1.8E-08 54.0 3.4 23 19-41 4-26 (189)
219 1uf9_A TT1252 protein; P-loop, 96.9 0.00062 2.1E-08 54.1 3.8 22 19-40 10-31 (203)
220 4e22_A Cytidylate kinase; P-lo 96.9 0.00083 2.8E-08 55.7 4.6 23 19-41 29-51 (252)
221 1m7g_A Adenylylsulfate kinase; 96.9 0.00068 2.3E-08 54.5 4.0 35 19-53 27-62 (211)
222 2j41_A Guanylate kinase; GMP, 96.9 0.00047 1.6E-08 54.9 3.0 23 19-41 8-30 (207)
223 3asz_A Uridine kinase; cytidin 96.9 0.00069 2.4E-08 54.3 3.9 24 19-42 8-31 (211)
224 3a8t_A Adenylate isopentenyltr 96.9 0.00057 1.9E-08 59.0 3.3 31 19-52 42-72 (339)
225 2grj_A Dephospho-COA kinase; T 96.9 0.00077 2.6E-08 53.6 3.9 33 19-56 14-46 (192)
226 1htw_A HI0065; nucleotide-bind 96.8 0.0012 4.1E-08 50.7 4.7 24 18-41 34-57 (158)
227 2xxa_A Signal recognition part 96.8 0.0021 7.3E-08 57.6 7.0 40 18-57 101-141 (433)
228 3a00_A Guanylate kinase, GMP k 96.8 0.00065 2.2E-08 53.5 3.2 24 19-42 3-26 (186)
229 2qt1_A Nicotinamide riboside k 96.8 0.00088 3E-08 53.6 4.0 35 18-56 22-56 (207)
230 1lvg_A Guanylate kinase, GMP k 96.8 0.00059 2E-08 54.4 2.9 23 19-41 6-28 (198)
231 1vma_A Cell division protein F 96.8 0.0011 3.7E-08 56.7 4.7 39 18-56 105-143 (306)
232 3ake_A Cytidylate kinase; CMP 96.8 0.0011 3.7E-08 52.9 4.3 23 19-41 4-26 (208)
233 3ney_A 55 kDa erythrocyte memb 96.8 0.00094 3.2E-08 53.2 3.8 23 19-41 21-43 (197)
234 1xjc_A MOBB protein homolog; s 96.8 0.0011 3.8E-08 51.4 4.1 35 19-53 6-40 (169)
235 3b9q_A Chloroplast SRP recepto 96.8 0.0013 4.4E-08 56.1 4.9 36 18-53 101-136 (302)
236 1ex7_A Guanylate kinase; subst 96.8 0.00069 2.4E-08 53.5 2.9 22 20-41 4-25 (186)
237 3nwj_A ATSK2; P loop, shikimat 96.7 0.00089 3.1E-08 55.5 3.6 23 19-41 50-72 (250)
238 1jjv_A Dephospho-COA kinase; P 96.7 0.00074 2.5E-08 53.9 3.0 21 19-39 4-24 (206)
239 4eaq_A DTMP kinase, thymidylat 96.7 0.0021 7E-08 52.5 5.7 30 19-49 28-57 (229)
240 1p9r_A General secretion pathw 96.7 0.0018 6E-08 57.8 5.6 80 16-99 166-246 (418)
241 2f6r_A COA synthase, bifunctio 96.7 0.0011 3.9E-08 55.8 4.1 26 13-39 72-97 (281)
242 3e70_C DPA, signal recognition 96.7 0.0015 5.3E-08 56.3 4.9 36 18-53 130-165 (328)
243 1znw_A Guanylate kinase, GMP k 96.7 0.001 3.5E-08 53.3 3.5 23 19-41 22-44 (207)
244 1vht_A Dephospho-COA kinase; s 96.7 0.0013 4.3E-08 53.1 4.0 21 19-39 6-26 (218)
245 1a7j_A Phosphoribulokinase; tr 96.7 0.00061 2.1E-08 57.8 2.1 39 19-57 7-45 (290)
246 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0014 4.9E-08 56.8 4.4 23 19-41 26-48 (359)
247 3d3q_A TRNA delta(2)-isopenten 96.7 0.0013 4.4E-08 56.9 4.1 23 19-41 9-31 (340)
248 3sfz_A APAF-1, apoptotic pepti 96.7 0.0091 3.1E-07 60.2 10.9 23 18-40 148-170 (1249)
249 1odf_A YGR205W, hypothetical 3 96.7 0.0015 5E-08 55.4 4.4 29 13-42 28-56 (290)
250 2oap_1 GSPE-2, type II secreti 96.6 0.0017 5.8E-08 59.5 5.0 32 19-51 262-293 (511)
251 2r6a_A DNAB helicase, replicat 96.6 0.0043 1.5E-07 56.0 7.7 36 19-54 205-241 (454)
252 3exa_A TRNA delta(2)-isopenten 96.6 0.0013 4.4E-08 56.1 3.9 23 19-41 5-27 (322)
253 1j8m_F SRP54, signal recogniti 96.6 0.0018 6.1E-08 55.1 4.8 39 18-56 99-137 (297)
254 1z6g_A Guanylate kinase; struc 96.6 0.0011 3.9E-08 53.6 3.2 23 19-41 25-47 (218)
255 2og2_A Putative signal recogni 96.6 0.0019 6.6E-08 56.3 4.9 36 18-53 158-193 (359)
256 1q3t_A Cytidylate kinase; nucl 96.6 0.002 6.9E-08 52.7 4.7 28 13-41 13-40 (236)
257 1tf7_A KAIC; homohexamer, hexa 96.6 0.0022 7.7E-08 59.0 5.5 36 19-54 283-318 (525)
258 3eph_A TRNA isopentenyltransfe 96.6 0.0018 6.1E-08 57.2 4.5 23 19-41 4-26 (409)
259 1gtv_A TMK, thymidylate kinase 96.6 0.00067 2.3E-08 54.4 1.6 24 19-42 2-25 (214)
260 1bif_A 6-phosphofructo-2-kinas 96.6 0.0035 1.2E-07 56.9 6.4 35 19-53 41-75 (469)
261 2px0_A Flagellar biosynthesis 96.5 0.0018 6.1E-08 55.1 4.2 38 19-56 107-145 (296)
262 4gp7_A Metallophosphoesterase; 96.5 0.0013 4.3E-08 51.1 3.0 19 19-37 11-29 (171)
263 1s96_A Guanylate kinase, GMP k 96.5 0.0014 4.9E-08 53.1 3.4 24 19-42 18-41 (219)
264 3llm_A ATP-dependent RNA helic 96.5 0.0088 3E-07 48.7 8.3 20 19-38 78-97 (235)
265 1svm_A Large T antigen; AAA+ f 96.5 0.0019 6.5E-08 56.8 4.4 23 19-41 171-193 (377)
266 2ehv_A Hypothetical protein PH 96.5 0.0016 5.5E-08 53.4 3.5 21 19-39 32-52 (251)
267 3cmw_A Protein RECA, recombina 96.4 0.0044 1.5E-07 64.0 6.9 83 19-102 734-823 (1706)
268 1ltq_A Polynucleotide kinase; 96.4 0.0018 6.3E-08 54.9 3.5 23 19-41 4-26 (301)
269 1vt4_I APAF-1 related killer D 96.4 0.0074 2.5E-07 59.6 8.0 22 19-40 152-173 (1221)
270 2jeo_A Uridine-cytidine kinase 96.4 0.0025 8.5E-08 52.5 4.1 23 19-41 27-49 (245)
271 1m8p_A Sulfate adenylyltransfe 96.4 0.0029 9.8E-08 58.8 4.9 48 6-53 385-433 (573)
272 3tif_A Uncharacterized ABC tra 96.4 0.0015 5E-08 53.7 2.7 26 19-44 33-58 (235)
273 2h92_A Cytidylate kinase; ross 96.4 0.002 6.7E-08 51.9 3.4 23 19-41 5-27 (219)
274 1np6_A Molybdopterin-guanine d 96.4 0.0027 9.2E-08 49.5 4.0 30 19-48 8-37 (174)
275 2v9p_A Replication protein E1; 96.4 0.0021 7.2E-08 54.8 3.6 23 19-41 128-150 (305)
276 2onk_A Molybdate/tungstate ABC 96.4 0.0018 6.1E-08 53.3 3.0 26 19-44 26-51 (240)
277 2qmh_A HPR kinase/phosphorylas 96.4 0.002 6.8E-08 51.2 3.1 23 19-41 36-58 (205)
278 3lnc_A Guanylate kinase, GMP k 96.3 0.0013 4.4E-08 53.6 2.1 23 19-41 29-52 (231)
279 1mv5_A LMRA, multidrug resista 96.3 0.0024 8.3E-08 52.6 3.7 29 18-46 29-57 (243)
280 2pcj_A ABC transporter, lipopr 96.3 0.0015 5E-08 53.2 2.4 26 19-44 32-57 (224)
281 4b3f_X DNA-binding protein smu 96.3 0.0048 1.6E-07 58.3 6.2 33 19-51 207-239 (646)
282 1g8f_A Sulfate adenylyltransfe 96.3 0.0021 7.2E-08 58.7 3.5 25 18-42 396-420 (511)
283 3aez_A Pantothenate kinase; tr 96.3 0.0029 9.9E-08 54.2 4.1 25 19-43 92-116 (312)
284 3sop_A Neuronal-specific septi 96.3 0.0024 8.3E-08 53.5 3.5 25 19-43 4-28 (270)
285 1cr0_A DNA primase/helicase; R 96.3 0.0032 1.1E-07 53.3 4.3 35 19-53 37-72 (296)
286 1x6v_B Bifunctional 3'-phospho 96.3 0.0037 1.3E-07 58.5 4.9 34 19-52 54-87 (630)
287 4edh_A DTMP kinase, thymidylat 96.3 0.0041 1.4E-07 50.2 4.6 31 19-49 8-38 (213)
288 3cr8_A Sulfate adenylyltranfer 96.2 0.0034 1.2E-07 58.0 4.5 38 18-55 370-408 (552)
289 2f1r_A Molybdopterin-guanine d 96.2 0.0023 7.8E-08 49.8 2.8 26 19-44 4-29 (171)
290 1b0u_A Histidine permease; ABC 96.2 0.002 6.8E-08 53.8 2.7 26 19-44 34-59 (262)
291 2axn_A 6-phosphofructo-2-kinas 96.2 0.0028 9.7E-08 58.2 3.9 36 19-54 37-72 (520)
292 4g1u_C Hemin import ATP-bindin 96.2 0.0024 8.3E-08 53.4 3.1 29 19-47 39-67 (266)
293 3fdi_A Uncharacterized protein 96.2 0.0042 1.4E-07 49.6 4.2 28 19-49 8-35 (201)
294 3llu_A RAS-related GTP-binding 96.2 0.067 2.3E-06 41.8 11.3 24 18-41 21-44 (196)
295 3fvq_A Fe(3+) IONS import ATP- 96.2 0.0024 8.1E-08 55.7 2.9 26 19-44 32-57 (359)
296 3gfo_A Cobalt import ATP-bindi 96.2 0.0021 7.1E-08 54.0 2.5 26 19-44 36-61 (275)
297 1g6h_A High-affinity branched- 96.2 0.0021 7.2E-08 53.4 2.5 26 19-44 35-60 (257)
298 2olj_A Amino acid ABC transpor 96.1 0.0022 7.6E-08 53.5 2.5 26 19-44 52-77 (263)
299 2v3c_C SRP54, signal recogniti 96.1 0.0018 6.1E-08 58.1 2.0 38 19-56 101-138 (432)
300 2ff7_A Alpha-hemolysin translo 96.1 0.0023 7.8E-08 52.9 2.5 26 19-44 37-62 (247)
301 1ji0_A ABC transporter; ATP bi 96.1 0.0023 8E-08 52.6 2.5 26 19-44 34-59 (240)
302 2z43_A DNA repair and recombin 96.1 0.0056 1.9E-07 52.6 5.0 37 19-55 109-151 (324)
303 1sgw_A Putative ABC transporte 96.1 0.0022 7.5E-08 51.8 2.2 26 19-44 37-62 (214)
304 3p32_A Probable GTPase RV1496/ 96.1 0.0043 1.5E-07 54.1 4.3 36 19-54 81-116 (355)
305 2pze_A Cystic fibrosis transme 96.1 0.0025 8.6E-08 52.0 2.5 26 19-44 36-61 (229)
306 3rlf_A Maltose/maltodextrin im 96.1 0.0029 1E-07 55.6 3.0 26 19-44 31-56 (381)
307 2ixe_A Antigen peptide transpo 96.1 0.0027 9.2E-08 53.3 2.7 26 19-44 47-72 (271)
308 2fn4_A P23, RAS-related protei 96.1 0.0051 1.7E-07 47.3 4.1 29 13-41 5-33 (181)
309 2gks_A Bifunctional SAT/APS ki 96.1 0.0045 1.5E-07 57.2 4.3 37 18-54 373-409 (546)
310 1z47_A CYSA, putative ABC-tran 96.0 0.0032 1.1E-07 54.8 3.0 26 19-44 43-68 (355)
311 2ihy_A ABC transporter, ATP-bi 96.0 0.0027 9.3E-08 53.5 2.5 26 19-44 49-74 (279)
312 2yyz_A Sugar ABC transporter, 96.0 0.0032 1.1E-07 54.9 3.0 26 19-44 31-56 (359)
313 1vpl_A ABC transporter, ATP-bi 96.0 0.0028 9.4E-08 52.7 2.5 26 19-44 43-68 (256)
314 3iev_A GTP-binding protein ERA 96.0 0.11 3.6E-06 44.2 12.5 28 13-40 6-33 (308)
315 3b85_A Phosphate starvation-in 96.0 0.0028 9.5E-08 51.0 2.4 26 19-45 24-49 (208)
316 2it1_A 362AA long hypothetical 96.0 0.0033 1.1E-07 54.9 3.0 25 19-43 31-55 (362)
317 2gza_A Type IV secretion syste 96.0 0.005 1.7E-07 53.9 4.1 33 19-52 177-209 (361)
318 2cbz_A Multidrug resistance-as 96.0 0.0034 1.2E-07 51.5 2.9 24 19-42 33-56 (237)
319 3d31_A Sulfate/molybdate ABC t 96.0 0.003 1E-07 54.9 2.5 26 19-44 28-53 (348)
320 1v43_A Sugar-binding transport 96.0 0.0035 1.2E-07 55.0 3.0 25 19-43 39-63 (372)
321 4ag6_A VIRB4 ATPase, type IV s 95.9 0.0054 1.8E-07 54.2 4.2 37 18-54 36-72 (392)
322 2v6i_A RNA helicase; membrane, 95.9 0.015 5.3E-07 52.0 7.2 16 19-34 4-19 (431)
323 2yz2_A Putative ABC transporte 95.9 0.0033 1.1E-07 52.5 2.7 25 19-43 35-59 (266)
324 3gmt_A Adenylate kinase; ssgci 95.9 0.0059 2E-07 49.7 4.0 23 19-41 10-32 (230)
325 1g29_1 MALK, maltose transport 95.9 0.0037 1.3E-07 54.9 3.0 26 19-44 31-56 (372)
326 1sky_E F1-ATPase, F1-ATP synth 95.9 0.021 7E-07 51.5 7.8 23 19-41 153-175 (473)
327 1pzn_A RAD51, DNA repair and r 95.9 0.0088 3E-07 52.0 5.4 38 18-55 132-175 (349)
328 2ocp_A DGK, deoxyguanosine kin 95.9 0.005 1.7E-07 50.4 3.6 23 19-41 4-26 (241)
329 3kta_A Chromosome segregation 95.9 0.0068 2.3E-07 47.1 4.2 25 19-43 28-52 (182)
330 1ky3_A GTP-binding protein YPT 95.9 0.0057 2E-07 47.1 3.7 24 18-41 9-32 (182)
331 2nq2_C Hypothetical ABC transp 95.9 0.0031 1.1E-07 52.3 2.2 26 19-44 33-58 (253)
332 2d2e_A SUFC protein; ABC-ATPas 95.9 0.0047 1.6E-07 51.1 3.2 22 19-40 31-52 (250)
333 1lw7_A Transcriptional regulat 95.9 0.0052 1.8E-07 53.8 3.7 26 18-43 171-196 (365)
334 2j37_W Signal recognition part 95.8 0.0066 2.2E-07 55.4 4.4 38 18-55 102-139 (504)
335 2qm8_A GTPase/ATPase; G protei 95.8 0.0077 2.6E-07 52.1 4.6 31 18-48 56-86 (337)
336 3nh6_A ATP-binding cassette SU 95.8 0.0033 1.1E-07 53.7 2.1 26 19-44 82-107 (306)
337 2qi9_C Vitamin B12 import ATP- 95.8 0.0037 1.3E-07 51.7 2.4 26 19-44 28-53 (249)
338 3bh0_A DNAB-like replicative h 95.8 0.0093 3.2E-07 51.1 5.0 36 19-54 70-105 (315)
339 2ffh_A Protein (FFH); SRP54, s 95.8 0.011 3.6E-07 52.8 5.4 39 18-56 99-137 (425)
340 2y8e_A RAB-protein 6, GH09086P 95.8 0.005 1.7E-07 47.3 2.9 29 11-40 9-37 (179)
341 2zu0_C Probable ATP-dependent 95.8 0.0056 1.9E-07 51.2 3.4 22 19-40 48-69 (267)
342 1moz_A ARL1, ADP-ribosylation 95.8 0.0056 1.9E-07 47.3 3.2 31 8-39 10-40 (183)
343 1ls1_A Signal recognition part 95.8 0.0076 2.6E-07 51.1 4.2 38 18-55 99-136 (295)
344 1oix_A RAS-related protein RAB 95.8 0.0053 1.8E-07 48.3 3.1 23 19-41 31-53 (191)
345 1oxx_K GLCV, glucose, ABC tran 95.8 0.0031 1.1E-07 55.0 1.8 26 19-44 33-58 (353)
346 2pjz_A Hypothetical protein ST 95.8 0.0041 1.4E-07 51.9 2.5 26 19-45 32-57 (263)
347 2f9l_A RAB11B, member RAS onco 95.8 0.0061 2.1E-07 48.1 3.4 23 19-41 7-29 (199)
348 1fzq_A ADP-ribosylation factor 95.7 0.0076 2.6E-07 46.8 3.9 31 9-40 9-39 (181)
349 1yrb_A ATP(GTP)binding protein 95.7 0.014 4.9E-07 48.0 5.7 37 18-55 15-51 (262)
350 2eyq_A TRCF, transcription-rep 95.7 0.076 2.6E-06 53.4 11.8 35 19-53 626-660 (1151)
351 2ged_A SR-beta, signal recogni 95.7 0.007 2.4E-07 47.3 3.6 23 19-41 50-72 (193)
352 2ghi_A Transport protein; mult 95.7 0.0051 1.7E-07 51.2 2.9 24 19-42 48-71 (260)
353 3v9p_A DTMP kinase, thymidylat 95.7 0.0063 2.2E-07 49.5 3.3 25 19-43 27-51 (227)
354 3lv8_A DTMP kinase, thymidylat 95.7 0.0084 2.9E-07 49.1 4.0 29 19-47 29-57 (236)
355 1z2a_A RAS-related protein RAB 95.7 0.007 2.4E-07 45.9 3.4 23 19-41 7-29 (168)
356 2dyk_A GTP-binding protein; GT 95.7 0.008 2.7E-07 45.2 3.6 23 19-41 3-25 (161)
357 3kkq_A RAS-related protein M-R 95.6 0.01 3.5E-07 45.9 4.2 27 15-41 16-42 (183)
358 2lkc_A Translation initiation 95.6 0.011 3.7E-07 45.4 4.3 23 19-41 10-32 (178)
359 3tui_C Methionine import ATP-b 95.6 0.0059 2E-07 53.3 3.0 26 19-44 56-81 (366)
360 1c9k_A COBU, adenosylcobinamid 95.6 0.0085 2.9E-07 46.9 3.6 32 20-55 2-33 (180)
361 2wsm_A Hydrogenase expression/ 95.6 0.014 5E-07 46.6 5.1 24 19-42 32-55 (221)
362 3hdt_A Putative kinase; struct 95.6 0.0098 3.4E-07 48.3 4.1 23 19-41 16-38 (223)
363 1nrj_B SR-beta, signal recogni 95.6 0.0082 2.8E-07 48.0 3.6 23 19-41 14-36 (218)
364 1wms_A RAB-9, RAB9, RAS-relate 95.6 0.0086 2.9E-07 45.9 3.5 24 18-41 8-31 (177)
365 2wji_A Ferrous iron transport 95.6 0.0079 2.7E-07 45.9 3.2 22 19-40 5-26 (165)
366 2wjg_A FEOB, ferrous iron tran 95.5 0.0099 3.4E-07 46.1 3.8 22 19-40 9-30 (188)
367 2www_A Methylmalonic aciduria 95.5 0.012 4.1E-07 51.2 4.7 29 17-45 74-102 (349)
368 1p5z_B DCK, deoxycytidine kina 95.5 0.004 1.4E-07 51.7 1.6 23 19-41 26-48 (263)
369 2nzj_A GTP-binding protein REM 95.5 0.0099 3.4E-07 45.4 3.7 22 19-40 6-27 (175)
370 3tw8_B RAS-related protein RAB 95.5 0.0087 3E-07 45.9 3.4 23 18-40 10-32 (181)
371 2gk6_A Regulator of nonsense t 95.5 0.011 3.7E-07 55.6 4.5 24 19-42 197-220 (624)
372 1kao_A RAP2A; GTP-binding prot 95.5 0.0092 3.1E-07 45.0 3.4 23 19-41 5-27 (167)
373 2ce2_X GTPase HRAS; signaling 95.5 0.009 3.1E-07 45.0 3.3 23 19-41 5-27 (166)
374 3gd7_A Fusion complex of cysti 95.5 0.0074 2.5E-07 53.2 3.1 23 19-41 49-71 (390)
375 1rif_A DAR protein, DNA helica 95.5 0.022 7.6E-07 47.6 6.0 23 19-41 130-152 (282)
376 2zej_A Dardarin, leucine-rich 95.5 0.0064 2.2E-07 47.3 2.5 21 19-39 4-24 (184)
377 1u8z_A RAS-related protein RAL 95.4 0.012 4.2E-07 44.3 4.0 23 19-41 6-28 (168)
378 3t1o_A Gliding protein MGLA; G 95.4 0.046 1.6E-06 42.4 7.5 23 19-41 16-38 (198)
379 3ice_A Transcription terminati 95.4 0.041 1.4E-06 48.3 7.6 37 19-55 176-214 (422)
380 2hxs_A RAB-26, RAS-related pro 95.4 0.011 3.9E-07 45.2 3.8 23 19-41 8-30 (178)
381 3tqf_A HPR(Ser) kinase; transf 95.4 0.0082 2.8E-07 46.5 2.8 22 19-40 18-39 (181)
382 1vg8_A RAS-related protein RAB 95.4 0.011 3.7E-07 46.7 3.7 24 18-41 9-32 (207)
383 4dkx_A RAS-related protein RAB 95.4 0.044 1.5E-06 44.1 7.4 29 12-41 9-37 (216)
384 2zts_A Putative uncharacterize 95.4 0.0098 3.3E-07 48.5 3.6 36 19-54 32-68 (251)
385 3pqc_A Probable GTP-binding pr 95.4 0.011 3.8E-07 46.0 3.7 23 18-40 24-46 (195)
386 2yv5_A YJEQ protein; hydrolase 95.4 0.012 3.9E-07 50.2 4.0 23 19-42 167-189 (302)
387 1ek0_A Protein (GTP-binding pr 95.4 0.01 3.5E-07 45.0 3.4 23 19-41 5-27 (170)
388 1svi_A GTP-binding protein YSX 95.4 0.0099 3.4E-07 46.4 3.4 22 19-40 25-46 (195)
389 2hf9_A Probable hydrogenase ni 95.4 0.02 6.7E-07 46.0 5.3 25 19-43 40-64 (226)
390 3ld9_A DTMP kinase, thymidylat 95.4 0.013 4.3E-07 47.6 4.0 31 19-49 23-54 (223)
391 1ewq_A DNA mismatch repair pro 95.4 0.025 8.7E-07 54.2 6.7 23 19-41 578-600 (765)
392 2gj8_A MNME, tRNA modification 95.4 0.011 3.6E-07 45.6 3.4 22 19-40 6-27 (172)
393 1z0j_A RAB-22, RAS-related pro 95.3 0.011 3.7E-07 44.9 3.4 23 19-41 8-30 (170)
394 1g16_A RAS-related protein SEC 95.3 0.011 3.7E-07 44.9 3.3 23 19-41 5-27 (170)
395 2oil_A CATX-8, RAS-related pro 95.3 0.011 3.7E-07 46.2 3.4 23 19-41 27-49 (193)
396 2g6b_A RAS-related protein RAB 95.3 0.011 3.8E-07 45.4 3.4 23 19-41 12-34 (180)
397 2bov_A RAla, RAS-related prote 95.3 0.014 4.7E-07 46.0 4.0 24 18-41 15-38 (206)
398 3con_A GTPase NRAS; structural 95.3 0.012 4.1E-07 45.8 3.6 24 18-41 22-45 (190)
399 2vp4_A Deoxynucleoside kinase; 95.3 0.008 2.7E-07 48.9 2.6 23 18-40 21-43 (230)
400 1z08_A RAS-related protein RAB 95.3 0.012 4E-07 44.8 3.4 23 19-41 8-30 (170)
401 2i1q_A DNA repair and recombin 95.3 0.015 5.2E-07 49.8 4.4 24 18-41 99-122 (322)
402 2a9k_A RAS-related protein RAL 95.3 0.013 4.5E-07 45.1 3.7 24 18-41 19-42 (187)
403 2npi_A Protein CLP1; CLP1-PCF1 95.3 0.0058 2E-07 55.2 1.8 24 19-42 140-163 (460)
404 1c1y_A RAS-related protein RAP 95.3 0.012 4.1E-07 44.5 3.4 23 19-41 5-27 (167)
405 2bbs_A Cystic fibrosis transme 95.3 0.0088 3E-07 50.6 2.8 24 19-42 66-89 (290)
406 2bme_A RAB4A, RAS-related prot 95.2 0.016 5.3E-07 44.9 4.0 24 18-41 11-34 (186)
407 2erx_A GTP-binding protein DI- 95.2 0.011 3.7E-07 44.9 3.1 22 19-40 5-26 (172)
408 3q85_A GTP-binding protein REM 95.2 0.012 4E-07 44.7 3.2 21 19-39 4-24 (169)
409 2p67_A LAO/AO transport system 95.2 0.011 3.7E-07 51.2 3.3 35 18-52 57-91 (341)
410 1r8s_A ADP-ribosylation factor 95.2 0.013 4.3E-07 44.3 3.4 23 19-41 2-24 (164)
411 3tmk_A Thymidylate kinase; pho 95.2 0.012 3.9E-07 47.6 3.2 25 19-43 7-31 (216)
412 1r2q_A RAS-related protein RAB 95.2 0.013 4.4E-07 44.4 3.4 23 19-41 8-30 (170)
413 2fh5_B SR-beta, signal recogni 95.2 0.013 4.3E-07 46.7 3.4 23 19-41 9-31 (214)
414 2gf0_A GTP-binding protein DI- 95.2 0.015 5.2E-07 45.5 3.9 23 19-41 10-32 (199)
415 3euj_A Chromosome partition pr 95.2 0.015 5.3E-07 52.6 4.3 28 19-46 31-58 (483)
416 3q72_A GTP-binding protein RAD 95.2 0.011 3.8E-07 44.7 3.0 21 19-39 4-24 (166)
417 3bc1_A RAS-related protein RAB 95.1 0.013 4.5E-07 45.4 3.4 23 19-41 13-35 (195)
418 3clv_A RAB5 protein, putative; 95.1 0.017 5.9E-07 45.1 4.1 23 19-41 9-31 (208)
419 1upt_A ARL1, ADP-ribosylation 95.1 0.019 6.5E-07 43.5 4.2 23 19-41 9-31 (171)
420 4tmk_A Protein (thymidylate ki 95.1 0.013 4.3E-07 47.2 3.2 28 19-46 5-32 (213)
421 2obl_A ESCN; ATPase, hydrolase 95.1 0.015 5.3E-07 50.4 4.0 26 19-44 73-98 (347)
422 3ihw_A Centg3; RAS, centaurin, 95.1 0.019 6.5E-07 44.7 4.1 24 18-41 21-44 (184)
423 3hjn_A DTMP kinase, thymidylat 95.1 0.017 6E-07 45.8 3.9 30 20-49 3-32 (197)
424 4dsu_A GTPase KRAS, isoform 2B 95.0 0.016 5.4E-07 44.8 3.6 23 19-41 6-28 (189)
425 2fwr_A DNA repair protein RAD2 95.0 0.046 1.6E-06 49.2 7.1 23 19-41 110-132 (472)
426 1z0f_A RAB14, member RAS oncog 95.0 0.015 5.1E-07 44.5 3.4 24 18-41 16-39 (179)
427 1f2t_A RAD50 ABC-ATPase; DNA d 95.0 0.019 6.5E-07 43.3 3.9 25 19-43 25-49 (149)
428 3t5g_A GTP-binding protein RHE 95.0 0.014 4.9E-07 44.9 3.3 22 19-40 8-29 (181)
429 4a1f_A DNAB helicase, replicat 95.0 0.017 6E-07 49.8 4.1 36 19-54 48-83 (338)
430 1m7b_A RND3/RHOE small GTP-bin 95.0 0.015 5E-07 45.2 3.3 23 19-41 9-31 (184)
431 3lxx_A GTPase IMAP family memb 95.0 0.015 5.3E-07 47.3 3.6 24 18-41 30-53 (239)
432 3h1t_A Type I site-specific re 95.0 0.03 1E-06 52.1 5.9 23 19-41 200-222 (590)
433 2qu8_A Putative nucleolar GTP- 95.0 0.021 7E-07 46.1 4.3 23 18-40 30-52 (228)
434 1tq4_A IIGP1, interferon-induc 95.0 0.014 4.6E-07 52.0 3.3 24 18-41 70-93 (413)
435 1z06_A RAS-related protein RAB 95.0 0.018 6.1E-07 44.8 3.7 24 18-41 21-44 (189)
436 2dpy_A FLII, flagellum-specifi 95.0 0.017 5.9E-07 51.8 4.0 26 19-44 159-184 (438)
437 1yks_A Genome polyprotein [con 95.0 0.041 1.4E-06 49.3 6.5 16 19-34 10-25 (440)
438 4bas_A ADP-ribosylation factor 95.0 0.016 5.4E-07 45.4 3.4 27 15-41 15-41 (199)
439 3bwd_D RAC-like GTP-binding pr 95.0 0.019 6.4E-07 44.2 3.7 23 19-41 10-32 (182)
440 3oes_A GTPase rhebl1; small GT 94.9 0.018 6.1E-07 45.4 3.6 24 18-41 25-48 (201)
441 1gwn_A RHO-related GTP-binding 94.9 0.018 6.1E-07 45.8 3.6 24 18-41 29-52 (205)
442 1pui_A ENGB, probable GTP-bind 94.9 0.01 3.4E-07 47.1 2.1 23 18-40 27-49 (210)
443 2cxx_A Probable GTP-binding pr 94.9 0.015 5.2E-07 45.0 3.1 22 19-40 3-24 (190)
444 2qag_B Septin-6, protein NEDD5 94.9 0.012 4.1E-07 52.4 2.8 23 19-41 44-66 (427)
445 2efe_B Small GTP-binding prote 94.9 0.017 5.8E-07 44.4 3.4 23 19-41 14-36 (181)
446 3k53_A Ferrous iron transport 94.9 0.017 5.8E-07 48.2 3.5 22 19-40 5-26 (271)
447 2oca_A DAR protein, ATP-depend 94.9 0.036 1.2E-06 50.4 6.0 23 19-41 130-152 (510)
448 1m2o_B GTP-binding protein SAR 94.9 0.017 5.8E-07 45.2 3.3 22 19-40 25-46 (190)
449 2wjy_A Regulator of nonsense t 94.9 0.022 7.5E-07 55.1 4.6 25 19-43 373-397 (800)
450 2ew1_A RAS-related protein RAB 94.9 0.016 5.5E-07 45.9 3.2 23 19-41 28-50 (201)
451 1u0l_A Probable GTPase ENGC; p 94.9 0.012 4.1E-07 50.0 2.5 24 19-42 171-194 (301)
452 1mh1_A RAC1; GTP-binding, GTPa 94.8 0.018 6.2E-07 44.4 3.4 23 19-41 7-29 (186)
453 2rcn_A Probable GTPase ENGC; Y 94.8 0.016 5.3E-07 50.5 3.2 23 19-41 217-239 (358)
454 3b5x_A Lipid A export ATP-bind 94.8 0.019 6.4E-07 53.5 4.0 28 19-46 371-398 (582)
455 1nij_A Hypothetical protein YJ 94.8 0.017 5.7E-07 49.5 3.4 25 17-41 4-28 (318)
456 1qzm_A ATP-dependent protease 94.8 0.16 5.4E-06 34.9 7.6 81 183-269 2-85 (94)
457 2atv_A RERG, RAS-like estrogen 94.8 0.022 7.4E-07 44.6 3.8 23 19-41 30-52 (196)
458 1x3s_A RAS-related protein RAB 94.8 0.017 5.8E-07 45.0 3.1 23 19-41 17-39 (195)
459 1zd9_A ADP-ribosylation factor 94.8 0.022 7.6E-07 44.3 3.7 24 18-41 23-46 (188)
460 2xtp_A GTPase IMAP family memb 94.8 0.019 6.5E-07 47.4 3.5 24 17-40 22-45 (260)
461 2fg5_A RAB-22B, RAS-related pr 94.7 0.019 6.5E-07 44.9 3.3 23 19-41 25-47 (192)
462 1qhl_A Protein (cell division 94.7 0.0092 3.2E-07 48.5 1.5 27 20-46 30-56 (227)
463 3c5c_A RAS-like protein 12; GD 94.7 0.02 6.8E-07 44.6 3.4 23 19-41 23-45 (187)
464 3tkl_A RAS-related protein RAB 94.7 0.025 8.5E-07 44.1 4.0 23 19-41 18-40 (196)
465 2gf9_A RAS-related protein RAB 94.7 0.029 9.9E-07 43.6 4.3 24 18-41 23-46 (189)
466 3thx_B DNA mismatch repair pro 94.7 0.065 2.2E-06 52.4 7.5 22 19-40 675-696 (918)
467 1e9r_A Conjugal transfer prote 94.7 0.017 5.8E-07 51.7 3.2 37 18-54 54-90 (437)
468 3cbq_A GTP-binding protein REM 94.7 0.017 5.7E-07 45.5 2.9 22 18-39 24-45 (195)
469 2iwr_A Centaurin gamma 1; ANK 94.7 0.02 7E-07 43.9 3.3 23 19-41 9-31 (178)
470 2q6t_A DNAB replication FORK h 94.7 0.024 8.4E-07 50.9 4.2 36 19-54 202-238 (444)
471 2il1_A RAB12; G-protein, GDP, 94.7 0.022 7.5E-07 44.5 3.5 23 18-40 27-49 (192)
472 3bgw_A DNAB-like replicative h 94.7 0.026 8.7E-07 50.8 4.3 37 19-55 199-235 (444)
473 3dz8_A RAS-related protein RAB 94.7 0.022 7.4E-07 44.5 3.5 23 19-41 25-47 (191)
474 2a5j_A RAS-related protein RAB 94.7 0.021 7.2E-07 44.5 3.4 23 19-41 23-45 (191)
475 3ozx_A RNAse L inhibitor; ATP 94.7 0.021 7.1E-07 52.7 3.7 34 10-44 19-52 (538)
476 3cio_A ETK, tyrosine-protein k 94.7 0.012 4E-07 50.1 1.9 37 19-55 106-143 (299)
477 2qnr_A Septin-2, protein NEDD5 94.6 0.017 5.7E-07 49.1 2.9 22 19-40 20-41 (301)
478 1zbd_A Rabphilin-3A; G protein 94.6 0.019 6.5E-07 45.2 3.1 23 19-41 10-32 (203)
479 3reg_A RHO-like small GTPase; 94.6 0.022 7.5E-07 44.5 3.4 23 19-41 25-47 (194)
480 2o52_A RAS-related protein RAB 94.6 0.018 6.1E-07 45.4 2.9 22 19-40 27-48 (200)
481 2p5s_A RAS and EF-hand domain 94.6 0.024 8.3E-07 44.5 3.7 24 18-41 29-52 (199)
482 2bcg_Y Protein YP2, GTP-bindin 94.6 0.021 7.2E-07 45.1 3.3 23 19-41 10-32 (206)
483 2zpa_A Uncharacterized protein 94.6 0.11 3.7E-06 48.9 8.5 85 18-111 193-277 (671)
484 2b6h_A ADP-ribosylation factor 94.6 0.027 9.1E-07 44.1 3.8 21 19-39 31-51 (192)
485 1q57_A DNA primase/helicase; d 94.6 0.032 1.1E-06 50.9 4.8 37 19-55 244-281 (503)
486 1zj6_A ADP-ribosylation factor 94.6 0.027 9.4E-07 43.6 3.8 22 19-40 18-39 (187)
487 3a1s_A Iron(II) transport prot 94.5 0.018 6.2E-07 47.7 2.8 22 19-40 7-28 (258)
488 4hlc_A DTMP kinase, thymidylat 94.5 0.024 8.2E-07 45.3 3.3 24 19-42 4-27 (205)
489 1f6b_A SAR1; gtpases, N-termin 94.5 0.027 9.3E-07 44.3 3.6 21 19-39 27-47 (198)
490 2h17_A ADP-ribosylation factor 94.5 0.022 7.5E-07 44.0 3.0 23 18-40 22-44 (181)
491 3b60_A Lipid A export ATP-bind 94.5 0.017 5.9E-07 53.8 2.8 26 19-44 371-396 (582)
492 1ksh_A ARF-like protein 2; sma 94.5 0.026 9E-07 43.6 3.4 22 19-40 20-41 (186)
493 2fu5_C RAS-related protein RAB 94.4 0.017 5.9E-07 44.5 2.3 22 19-40 10-31 (183)
494 2q3h_A RAS homolog gene family 94.4 0.028 9.4E-07 44.1 3.5 23 18-40 21-43 (201)
495 3cph_A RAS-related protein SEC 94.4 0.026 9E-07 44.6 3.4 22 19-40 22-43 (213)
496 2wv9_A Flavivirin protease NS2 94.4 0.071 2.4E-06 50.5 6.8 15 19-33 243-257 (673)
497 2cjw_A GTP-binding protein GEM 94.4 0.025 8.6E-07 44.3 3.2 22 19-40 8-29 (192)
498 3bfv_A CAPA1, CAPB2, membrane 94.4 0.027 9.2E-07 47.1 3.5 39 18-56 83-122 (271)
499 4i1u_A Dephospho-COA kinase; s 94.3 0.028 9.7E-07 45.0 3.4 22 19-41 11-32 (210)
500 3qf7_A RAD50; ABC-ATPase, ATPa 94.3 0.036 1.2E-06 48.4 4.3 26 19-44 25-50 (365)
No 1
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=100.00 E-value=1.8e-34 Score=250.87 Aligned_cols=274 Identities=56% Similarity=0.914 Sum_probs=239.7
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHH
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLT 82 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
+.+.+.++..|++|..+++|+||||||||++|+++++.+.....+++.++|+.+........++|...++.++.....+.
T Consensus 33 i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 112 (311)
T 4fcw_A 33 IRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLT 112 (311)
T ss_dssp HHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHH
T ss_pred HHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCccccccccchHH
Confidence 45556677888889888999999999999999999999977778899999998887777788899888888887767888
Q ss_pred HHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhc--cCCchHHHHHHH
Q 047225 83 EAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARES--ILGSDQMERGVA 160 (287)
Q Consensus 83 ~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~--~~~~~~~~~~~~ 160 (287)
+.+...+++++||||+|++++..++.|+++++++.+....+..+.+.++++|+|+|.+...+.... ...+.++.+.+.
T Consensus 113 ~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~ 192 (311)
T 4fcw_A 113 EAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVF 192 (311)
T ss_dssp HHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTH
T ss_pred HHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHH
Confidence 888888889999999999999999999999999998877788899999999999999755443321 111446667777
Q ss_pred HHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 161 EELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
+.+...|+++|++||+..+.|+||+.+++..|+..++.++...+...+..+.++++++++++.+.|....++|+++++++
T Consensus 193 ~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~ 272 (311)
T 4fcw_A 193 KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQ 272 (311)
T ss_dssp HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHH
T ss_pred HHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHHH
Confidence 66778899999999999999999999999999999999988888765668999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEEEEcCCccEEEEE
Q 047225 241 RLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYR 276 (287)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 276 (287)
+++..++++.++.+++.+++++.+++++++.++.+.
T Consensus 273 ~~~~~~~~~~i~~~~~~~~~~i~i~~~~~~~~~~~~ 308 (311)
T 4fcw_A 273 RELETPLAQKILAGEVKEGDRVQVDVGPAGLVFAVP 308 (311)
T ss_dssp HHTHHHHHHHHHHTSSCTTCEEEEEECSSSEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEEECCeEEEEec
Confidence 999999999999999999999999999988877653
No 2
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=5.2e-34 Score=275.73 Aligned_cols=270 Identities=41% Similarity=0.723 Sum_probs=232.9
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHH
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLT 82 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
++..+.++..|++|.++++|+||||||||++|+++++.+ +.+++.++|+++.+...+..++|.+++++|+...+.+.
T Consensus 474 i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~ 550 (758)
T 1r6b_X 474 IKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLT 550 (758)
T ss_dssp HHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHH
T ss_pred HHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHH
Confidence 556677888999999899999999999999999999999 67899999999998888899999999999988888888
Q ss_pred HHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchH--HHHHHH
Q 047225 83 EAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQ--MERGVA 160 (287)
Q Consensus 83 ~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~--~~~~~~ 160 (287)
+.+...+++||||||++++++++++.|+++++++.+....|..+++.+++||+|+|++...+.. ..+||.. ....+.
T Consensus 551 ~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~-~~~g~~~~~~~~~~~ 629 (758)
T 1r6b_X 551 DAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETER-KSIGLIHQDNSTDAM 629 (758)
T ss_dssp HHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC------------------CH
T ss_pred HHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhh-cccCccccchHHHHH
Confidence 9999999999999999999999999999999999999888999999999999999997644322 1222221 123445
Q ss_pred HHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 161 EELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
..+++.|+|+|++||+..|.|+|++.+++..|+...+.++...+...+..+.++++++++++...|.+++|+|+++++++
T Consensus 630 ~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~ 709 (758)
T 1r6b_X 630 EEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_dssp HHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHH
T ss_pred HHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHHHH
Confidence 56667899999999999999999999999999999999888888776667899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEEEEcCCc--cEEEEE
Q 047225 241 RLLEDNLAEIILTGYIQVGDSVTMDCDSGG--NVIMYR 276 (287)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~ 276 (287)
+.+..++++.++.+++..++++.+++++++ ..+...
T Consensus 710 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 747 (758)
T 1r6b_X 710 DNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQ 747 (758)
T ss_dssp HHHTHHHHHHHHHSTTTTCEEEEEEEEGGGTEEEEEEE
T ss_pred HHHHHHHHHHHHcCcCCCCCEEEEEEeCCceeEEEEEc
Confidence 999999999999999999999999998765 455544
No 3
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=2.2e-33 Score=274.08 Aligned_cols=273 Identities=56% Similarity=0.924 Sum_probs=229.2
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHH
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLT 82 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (287)
+.+.+.++..|++|.++++|+||||||||++|+++++.+...+.+++.++|+++........++|.++++.|+...+.+.
T Consensus 574 i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~ 653 (854)
T 1qvr_A 574 IRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLT 653 (854)
T ss_dssp HHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHH
T ss_pred HHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHH
Confidence 56677788889999889999999999999999999999987788999999999998878888999999999998877888
Q ss_pred HHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccC--CchHHHHHHH
Q 047225 83 EAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESIL--GSDQMERGVA 160 (287)
Q Consensus 83 ~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~--~~~~~~~~~~ 160 (287)
+.+...++++|||||++++++++++.|+++++++.+....|..+++.+++||+|||.+...+...... .+..+.+.+.
T Consensus 654 ~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~ 733 (854)
T 1qvr_A 654 EAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVF 733 (854)
T ss_dssp HHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHH
Confidence 99999889999999999999999999999999999998889999999999999999976554321000 1344666666
Q ss_pred HHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 161 EELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
...+..|.|+|++||+..+.|+||+.+++..|+..++.++..++...+..+.++++++++|+.+.|.+.+|+|+++++|+
T Consensus 734 ~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~ 813 (854)
T 1qvr_A 734 KVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQ 813 (854)
T ss_dssp HHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHH
T ss_pred HHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHH
Confidence 67788999999999999999999999999999999999988888766667899999999999999988899999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCEEEEEEcCCccEEEE
Q 047225 241 RLLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMY 275 (287)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 275 (287)
+.+..++++.++.+++.+++++.+++++++..+..
T Consensus 814 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 848 (854)
T 1qvr_A 814 RELETPLAQKILAGEVKEGDRVQVDVGPAGLVFAV 848 (854)
T ss_dssp HHTHHHHHHHHHHTSSCSSCEEEEECCTTSCEEES
T ss_pred HHHHHHHHHHHHhCcCCCCCEEEEEEECCEEEEEe
Confidence 99999999999999999999999999877655543
No 4
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=5.7e-32 Score=261.29 Aligned_cols=249 Identities=56% Similarity=0.914 Sum_probs=211.9
Q ss_pred chhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhH
Q 047225 2 TLERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQL 81 (287)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (287)
++.+.+.++..|++|.++++|+||||||||++|+++++.+.....+++.++|+++.+..... .+.+
T Consensus 506 ~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~--------------~~~l 571 (758)
T 3pxi_A 506 AVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS--------------GGQL 571 (758)
T ss_dssp HHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-----------------C
T ss_pred HHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc--------------cchh
Confidence 35667778888999998999999999999999999999998878999999999988653222 2456
Q ss_pred HHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHH
Q 047225 82 TEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAE 161 (287)
Q Consensus 82 ~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~ 161 (287)
.+.+...++++|||||++++++++++.|++++++|.+....|..+.+.++++|+|||.+... ...+..
T Consensus 572 ~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~------------~~~~~~ 639 (758)
T 3pxi_A 572 TEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE------------KDKVMG 639 (758)
T ss_dssp HHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTC------------CHHHHH
T ss_pred hHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhh------------HHHHHH
Confidence 67778888899999999999999999999999999998888888999999999999987542 133445
Q ss_pred HHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHH
Q 047225 162 ELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 162 ~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
.+++.|+|+|++||+..|.|+||+.+++.+|+...+.++..++...+..+.++++++++|+...|...+|+|+++++|++
T Consensus 640 ~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~~ 719 (758)
T 3pxi_A 640 ELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQK 719 (758)
T ss_dssp HHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHHH
T ss_pred HHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHHH
Confidence 55667999999999999999999999999999999999988888777789999999999999888889999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCEEEEEEcCCccEEEEE
Q 047225 242 LLEDNLAEIILTGYIQVGDSVTMDCDSGGNVIMYR 276 (287)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 276 (287)
.+...+++.++.+.+.+++++.+++++++.++...
T Consensus 720 ~v~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 754 (758)
T 3pxi_A 720 HVEDRLSEELLRGNIHKGQHIVLDVEDGEFVVKTT 754 (758)
T ss_dssp HTHHHHHHHHHTTCSCSSSEEEEEESSSSEEEEEC
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEEECCEEEEEEe
Confidence 99999999999999999999999999887766554
No 5
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.90 E-value=2.6e-23 Score=184.48 Aligned_cols=219 Identities=21% Similarity=0.347 Sum_probs=149.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHH-------HhCCc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAV-------RHRPH 90 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 90 (287)
.+++|+||||||||++|+++|+.+ +.+++.++|+...... ++ |......+.... ...+.
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~~~~l~~~~----~~-------g~~~~~~~~~~~~~~~~~~~~~~~ 117 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL---DVPFTMADATTLTEAG----YV-------GEDVENIIQKLLQKCDYDVQKAQR 117 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHTTCH----HH-------HHHHTHHHHHHHHHTTTCHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc---CCCEEEechHHhcccc----cc-------cccHHHHHHHHHHHhhhhHHhcCC
Confidence 469999999999999999999998 6789999998654321 11 111112222222 22245
Q ss_pred EEEEEcCcccccHH--------------HHHHHHHhhcCceeec--CCCc--------eeeccceEEEEeecCC-chhhh
Q 047225 91 SVILFDEIEKAHRD--------------VLNVMLQLLDDGRVTD--GKGQ--------TVDLKNTIIIMTSNIG-DSVIA 145 (287)
Q Consensus 91 ~il~iDeid~~~~~--------------~~~~L~~~l~~~~~~~--~~g~--------~i~~~~~~iI~t~n~~-~~~~~ 145 (287)
++|||||+|++++. +++.|+++++...... ..|. .+...+.++|+++|.. .....
T Consensus 118 ~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i 197 (363)
T 3hws_A 118 GIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVI 197 (363)
T ss_dssp CEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHH
T ss_pred cEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHH
Confidence 79999999998776 9999999999322211 1222 3344567777777752 21111
Q ss_pred hh-----ccCCchH-------------HHHHH--HHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHH----HHHHHH
Q 047225 146 RE-----SILGSDQ-------------MERGV--AEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDI----MLKEIY 201 (287)
Q Consensus 146 ~~-----~~~~~~~-------------~~~~~--~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~----~l~~~~ 201 (287)
.. ..+||.. +...+ .+..+..|.|+|++||+.++.|+||+.+++.+|+.. .+.++.
T Consensus 198 ~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~ 277 (363)
T 3hws_A 198 SHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQ 277 (363)
T ss_dssp HHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHH
T ss_pred HHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 10 1112111 11100 111233489999999999999999999999999987 777777
Q ss_pred HHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHH
Q 047225 202 ERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNLAEI 250 (287)
Q Consensus 202 ~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~~~~ 250 (287)
..+...+..+.++++++++|+..+|..++|+|++++++++++..++.+.
T Consensus 278 ~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 278 ALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp HHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred HHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 7776667789999999999999888889999999999999999877644
No 6
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.89 E-value=1.8e-22 Score=179.97 Aligned_cols=233 Identities=22% Similarity=0.368 Sum_probs=151.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHH-------HhCCc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAV-------RHRPH 90 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 90 (287)
.+++|+||||||||++|+++++.+ +.+++.++|...... ++.|......+...+ ...+.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~ 138 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDATSLTEA-----------GYVGEDVENILTRLLQASDWNVQKAQK 138 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEGGGCC-------------------CTHHHHHHHHHTTTCHHHHTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecchhhhhc-----------CcCCccHHHHHHHHHhhccchhhhcCC
Confidence 369999999999999999999998 678888888765421 112222112222222 22345
Q ss_pred EEEEEcCcccccHH--------------HHHHHHHhhcCceeecC--CCce--------eeccceEEEEeecCCch--hh
Q 047225 91 SVILFDEIEKAHRD--------------VLNVMLQLLDDGRVTDG--KGQT--------VDLKNTIIIMTSNIGDS--VI 144 (287)
Q Consensus 91 ~il~iDeid~~~~~--------------~~~~L~~~l~~~~~~~~--~g~~--------i~~~~~~iI~t~n~~~~--~~ 144 (287)
+++||||++++... +++.|+++++.+.+..+ .+.. +...+.++|+++|...- .+
T Consensus 139 ~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l 218 (376)
T 1um8_A 139 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEII 218 (376)
T ss_dssp SEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHT
T ss_pred eEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHH
Confidence 79999999999887 99999999997654322 1222 33356677777763110 00
Q ss_pred hhh---ccCCchHH-----------HHHHHHH-HHhcCChhHHhccCceEEeCCCCHHHHHHHHH----HHHHHHHHHHH
Q 047225 145 ARE---SILGSDQM-----------ERGVAEE-LRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVD----IMLKEIYERLE 205 (287)
Q Consensus 145 ~~~---~~~~~~~~-----------~~~~~~~-~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~ 205 (287)
.+. ..+||... ....... .+..|.|+|++||+..+.|+|++.+++..++. ..+.++...+.
T Consensus 219 ~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~ 298 (376)
T 1um8_A 219 KKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFK 298 (376)
T ss_dssp TTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHH
T ss_pred HHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 000 00111110 0001111 13468899999999999999999999999997 45666666665
Q ss_pred hcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEEEcC
Q 047225 206 AKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDS 268 (287)
Q Consensus 206 ~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 268 (287)
..+..+.++++++++|+..+|....++|.+++++++++..++.+.... ..+.+.|+.++
T Consensus 299 ~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~----~~~~~~i~~~~ 357 (376)
T 1um8_A 299 MDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDLPKL----KGSEVRITKDC 357 (376)
T ss_dssp TTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGG----TTSEEEECHHH
T ss_pred hcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhccCC----CCCEEEEeHHH
Confidence 556689999999999999999888899999999999999777654322 34566666443
No 7
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.89 E-value=4e-22 Score=172.62 Aligned_cols=214 Identities=22% Similarity=0.386 Sum_probs=152.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHH-------h-CCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVR-------H-RPH 90 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~ 90 (287)
+++|+||||||||++++++++.+ +.+++.++|+.+... ++.+......+.+... . .+.
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQN 117 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGGSSC-----------CSGGGSTTHHHHHHHHTTTTCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcchhcccC-----------CccCccHHHHHHHHHHHhhHHHhhccCC
Confidence 69999999999999999999998 668889999876542 1112111111222111 1 124
Q ss_pred EEEEEcCcccccHHH------------HHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHH
Q 047225 91 SVILFDEIEKAHRDV------------LNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERG 158 (287)
Q Consensus 91 ~il~iDeid~~~~~~------------~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~ 158 (287)
++|||||+|++.... ++.|+++++.+.+....+ .....++++|+++|.....
T Consensus 118 ~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~-~~~~~~~~~i~~~~~~~~~--------------- 181 (310)
T 1ofh_A 118 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHG-MVKTDHILFIASGAFQVAR--------------- 181 (310)
T ss_dssp CEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTE-EEECTTCEEEEEECCSSSC---------------
T ss_pred CEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccc-cccCCcEEEEEcCCcccCC---------------
Confidence 699999999987654 889999999876655444 3445577888887542111
Q ss_pred HHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHH----HHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCC-----C
Q 047225 159 VAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVD----IMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNP-----S 229 (287)
Q Consensus 159 ~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~-----~ 229 (287)
...+.++|.+||+..+.|+||+.+++.+|+. ..+.++...+...+..+.++++++++++..+|.. .
T Consensus 182 -----~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~ 256 (310)
T 1ofh_A 182 -----PSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTEN 256 (310)
T ss_dssp -----GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCC
T ss_pred -----cccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccc
Confidence 0246799999998789999999999999998 4555555555555667899999999999988753 5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEEEcCCcc
Q 047225 230 YGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGGN 271 (287)
Q Consensus 230 ~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 271 (287)
.++|.+.+.+++++..+. +......++.+.|+.++...
T Consensus 257 g~~R~l~~~l~~~~~~~~----~~~~~~~~~~~~i~~~~v~~ 294 (310)
T 1ofh_A 257 IGARRLHTVMERLMDKIS----FSASDMNGQTVNIDAAYVAD 294 (310)
T ss_dssp CTTHHHHHHHHHHSHHHH----HHGGGCTTCEEEECHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhh----cCCccccCCEEEEeeHHHHH
Confidence 788999999998877543 33333446667777665443
No 8
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.88 E-value=8.6e-23 Score=176.66 Aligned_cols=203 Identities=20% Similarity=0.225 Sum_probs=150.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++|+||||||||++|+++++.....+.+++.++|+..........+||...+. .|... .....+.....++|||||
T Consensus 27 ~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~--~~~g~~~~a~~g~L~LDE 104 (304)
T 1ojl_A 27 TVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK--RREGRFVEADGGTLFLDE 104 (304)
T ss_dssp CEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C--CCCCHHHHHTTSEEEEES
T ss_pred cEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh--hhcCHHHhcCCCEEEEec
Confidence 699999999999999999999887667899999999887655556778765442 22211 111122222346999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE 177 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 177 (287)
++.++...+..|+++++++.+....+......++.+|++||...... .-...|.++|.+||..
T Consensus 105 i~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~-----------------v~~g~fr~~L~~Rl~~ 167 (304)
T 1ojl_A 105 IGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEE-----------------VSAGRFRQDLYYRLNV 167 (304)
T ss_dssp CTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHH-----------------HHHTSSCHHHHHHHSS
T ss_pred cccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHH-----------------HHhCCcHHHHHhhcCe
Confidence 99999999999999999886543222222234789999999863221 1134789999999954
Q ss_pred -eEEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 178 -VIVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 178 -~i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
.+.+||++ .+++..++.+++.++....... ...+++++++.+..+.|+. ++|++++.+++++.
T Consensus 168 ~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~--~~~~s~~a~~~L~~~~wpG--nvReL~~~l~~~~~ 233 (304)
T 1ojl_A 168 VAIEMPSLRQRREDIPLLADHFLRRFAERNRKV--VKGFTPQAMDLLIHYDWPG--NIRELENAIERAVV 233 (304)
T ss_dssp EEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCC--CCCBCHHHHHHHHHCCCSS--HHHHHHHHHHHHHH
T ss_pred eEEeccCHHHhHhhHHHHHHHHHHHHHHHhccC--ccCCCHHHHHHHHcCCCCC--CHHHHHHHHHHHHH
Confidence 48899999 7899999999998776655321 3579999999999998854 67999999997765
No 9
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.88 E-value=2.6e-22 Score=170.45 Aligned_cols=202 Identities=16% Similarity=0.290 Sum_probs=144.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++|+||||||||++|+++++.+.....+++.++|+.+........++|...+. .|... .....+.....++|||||
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~g~~~~~~~g~~~--~~~~~l~~a~~~~l~lDE 108 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQK--RHPGRFERADGGTLFLDE 108 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHHCCC-----------CCCCHHHHTTTSEEEEES
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhcCCcccccccccc--cccchhhhcCCcEEEEec
Confidence 699999999999999999999886666889999999876544445566654331 12111 011223333457999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC-
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID- 176 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~- 176 (287)
++.++.+.+..|+++++++.+....+......++.+|+++|.+..... -+..|.++|.+||.
T Consensus 109 i~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~-----------------~~~~~~~~L~~Rl~~ 171 (265)
T 2bjv_A 109 LATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV-----------------NEGTFRADLLDALAF 171 (265)
T ss_dssp GGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHH-----------------HHTSSCHHHHHHHCS
T ss_pred hHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHH-----------------HcCCccHHHHHhhcC
Confidence 999999999999999998865432232223347889999998643221 12468899999995
Q ss_pred ceEEeCCCCH--HHHHHHHHHHHHHHHHHHHhcCcE--EEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 177 EVIVFRQLNK--MQLMEIVDIMLKEIYERLEAKNME--LTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 177 ~~i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~--~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
..+.+||++. +++..++.+++.+..... +.. ..+++++++.+..+.|.. ++|++++.+++++.
T Consensus 172 ~~i~lp~L~~R~~di~~l~~~~l~~~~~~~---~~~~~~~~~~~a~~~L~~~~~~g--n~reL~~~l~~~~~ 238 (265)
T 2bjv_A 172 DVVQLPPLRERESDIMLMAEYFAIQMCREI---KLPLFPGFTERARETLLNYRWPG--NIRELKNVVERSVY 238 (265)
T ss_dssp EEEECCCGGGCHHHHHHHHHHHHHHHHHHT---TCSSCCCBCHHHHHHHHHSCCTT--HHHHHHHHHHHHHH
T ss_pred cEEeCCChhhhhHHHHHHHHHHHHHHHHHh---CCCcccCcCHHHHHHHHhCCCCC--CHHHHHHHHHHHHH
Confidence 4589999985 788889888887765544 222 368999999999888854 67899999987664
No 10
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.84 E-value=1.6e-20 Score=167.73 Aligned_cols=203 Identities=19% Similarity=0.266 Sum_probs=159.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++++|++||||+++++.++........+++.+||+.+.+......+||...|. +|.... -...+.....++|||||
T Consensus 162 ~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~--~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 162 PVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS--KEGFFELADGGTLFLDE 239 (387)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC--BCCHHHHTTTSEEEEES
T ss_pred CeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc--cCCceeeCCCcEEEEcC
Confidence 589999999999999999999887777899999999988776677889876553 332221 12233444557999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE 177 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 177 (287)
++.++++.|..|+++++++.+....+......++.+|++||.+.... .-++.|.++|..|+..
T Consensus 240 i~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~-----------------~~~g~fr~dl~~rl~~ 302 (387)
T 1ny5_A 240 IGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKEL-----------------VKEGKFREDLYYRLGV 302 (387)
T ss_dssp GGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHH-----------------HHTTSSCHHHHHHHTT
T ss_pred hhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHH-----------------HHcCCccHHHHHhhcC
Confidence 99999999999999999988765444444446889999999864322 1245799999999964
Q ss_pred e-EEeCCCC--HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 178 V-IVFRQLN--KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 178 ~-i~~~~~~--~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
. +.+||+. .+|+..++.+++.++..+.... ...+++++++.+..+.|+. ++|++++.+++++.
T Consensus 303 ~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~l~~~~wpG--NvreL~~~i~~~~~ 368 (387)
T 1ny5_A 303 IEIEIPPLRERKEDIIPLANHFLKKFSRKYAKE--VEGFTKSAQELLLSYPWYG--NVRELKNVIERAVL 368 (387)
T ss_dssp EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCC--CCEECHHHHHHHHHSCCTT--HHHHHHHHHHHHHH
T ss_pred CeecCCcchhccccHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHhCCCCc--HHHHHHHHHHHHHH
Confidence 4 8999998 5899999999998887766432 2479999999999999955 66999999998775
No 11
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.83 E-value=4.4e-20 Score=163.63 Aligned_cols=202 Identities=19% Similarity=0.279 Sum_probs=156.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC-CcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY-VGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++++|++||||+.+++.++......+ .++.+||..+.+......+||...|. .|.... -...+.....++|||||
T Consensus 154 ~vli~GesGtGKe~lAr~ih~~s~r~~-~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~--~~g~~~~a~~gtlflde 230 (368)
T 3dzd_A 154 PVLITGESGTGKEIVARLIHRYSGRKG-AFVDLNCASIPQELAESELFGHEKGAFTGALTR--KKGKLELADQGTLFLDE 230 (368)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHCCCS-CEEEEESSSSCTTTHHHHHHEECSCSSSSCCCC--EECHHHHTTTSEEEEET
T ss_pred hheEEeCCCchHHHHHHHHHHhccccC-CcEEEEcccCChHHHHHHhcCccccccCCcccc--cCChHhhcCCCeEEecC
Confidence 599999999999999999998875543 49999999988777778889876553 333221 11223333456999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE 177 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 177 (287)
++.+++..|..|+++++++.+....+......++.+|++||.+... ...++.|.++|..|+..
T Consensus 231 i~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~-----------------~v~~g~fr~dL~~rl~~ 293 (368)
T 3dzd_A 231 VGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEE-----------------EIKKGNFREDLYYRLSV 293 (368)
T ss_dssp GGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHH-----------------HHHTTSSCHHHHHHHTS
T ss_pred hhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHH-----------------HHHcCCccHHHHHHhCC
Confidence 9999999999999999998876544443344578999999976432 12245899999999965
Q ss_pred e-EEeCCCCH--HHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 178 V-IVFRQLNK--MQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 178 ~-i~~~~~~~--~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
. |.+||+.. +|+..++.+++.++....... ...+++++++.+..+.|+. ++|++++.+++++.
T Consensus 294 ~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~~~wpG--NvreL~n~i~~~~~ 359 (368)
T 3dzd_A 294 FQIYLPPLRERGKDVILLAEYFLKKFAKEYKKN--CFELSEETKEYLMKQEWKG--NVRELKNLIERAVI 359 (368)
T ss_dssp EEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCC--CCCBCHHHHHHHHTCCCTT--HHHHHHHHHHHHHH
T ss_pred eEEeCCChhhchhhHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHHhCCCCc--HHHHHHHHHHHHHH
Confidence 4 88999996 899999999998887766432 3579999999999999966 45999999997764
No 12
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.82 E-value=1.8e-19 Score=156.01 Aligned_cols=185 Identities=21% Similarity=0.298 Sum_probs=133.6
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCC----CCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcE
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGS----KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHS 91 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (287)
+..+++|+||||||||++|+++++.+... ..+++.+++++.... ++ |... ..+...+.....+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~-----~~-------g~~~-~~~~~~~~~~~~~ 132 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQ-----YI-------GHTA-PKTKEVLKRAMGG 132 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCS-----ST-------TCHH-HHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhh-----cc-------cccH-HHHHHHHHhcCCC
Confidence 34479999999999999999999988432 337788887654321 11 1111 2233444443557
Q ss_pred EEEEcCcccc---------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 92 VILFDEIEKA---------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 92 il~iDeid~~---------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
+|||||+|.+ +...++.|+++++.+. .++++|+++|......
T Consensus 133 vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~-----------~~~~~i~~~~~~~~~~------------------ 183 (309)
T 3syl_A 133 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR-----------DDLVVILAGYADRMEN------------------ 183 (309)
T ss_dssp EEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT-----------TTCEEEEEECHHHHHH------------------
T ss_pred EEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC-----------CCEEEEEeCChHHHHH------------------
Confidence 9999999977 8899999999998642 3557888888642111
Q ss_pred HHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhcc-----CCCCCchhHHH
Q 047225 163 LRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGY-----NPSYGARPLRR 237 (287)
Q Consensus 163 ~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-----~~~~~~r~l~~ 237 (287)
-..+.|+|.+||+..+.|+||+.+++.+|+...+.+. .+.+++++++.++.... ....++|.+++
T Consensus 184 -~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~ 253 (309)
T 3syl_A 184 -FFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ---------NYQMTPEAETALRAYIGLRRNQPHFANARSIRN 253 (309)
T ss_dssp -HHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHT---------TCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHH
T ss_pred -HHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHH
Confidence 0123589999999999999999999999998887652 35799999999987621 22345899999
Q ss_pred HHHHHHHHHHHHHHH
Q 047225 238 AIGRLLEDNLAEIIL 252 (287)
Q Consensus 238 ~i~~~~~~~~~~~~~ 252 (287)
.+++++..+..+...
T Consensus 254 ~l~~a~~~~~~r~~~ 268 (309)
T 3syl_A 254 ALDRARLRQANRLFT 268 (309)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999877766544
No 13
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.81 E-value=6.2e-19 Score=163.75 Aligned_cols=199 Identities=27% Similarity=0.396 Sum_probs=131.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhC--CcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHR--PHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~il~iD 96 (287)
+++|+||||||||+++++++..+ ..++..++|+...+. ..+++....+.|.... .+...+... ..+++|||
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l---~~~~~~i~~~~~~~~---~~~~g~~~~~ig~~~~-~~~~~~~~a~~~~~vl~lD 182 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSL---GRKFVRISLGGVRDE---SEIRGHRRTYVGAMPG-RIIQGMKKAGKLNPVFLLD 182 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHH---TCEEEEECCCC------------------------CHHHHHHTTCSSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEEEecccchh---hhhhhHHHHHhccCch-HHHHHHHHhhccCCEEEEh
Confidence 79999999999999999999999 667888888775543 2233333334443332 222233222 34699999
Q ss_pred CcccccHH----HHHHHHHhhcCce---eecC-CCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCC
Q 047225 97 EIEKAHRD----VLNVMLQLLDDGR---VTDG-KGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFR 168 (287)
Q Consensus 97 eid~~~~~----~~~~L~~~l~~~~---~~~~-~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
|+|++.++ .++.|+++++.+. +... .+..+++.+++||+|+|... .++
T Consensus 183 Eid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~------------------------~l~ 238 (543)
T 3m6a_A 183 EIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA------------------------TIP 238 (543)
T ss_dssp ESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT------------------------TSC
T ss_pred hhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc------------------------cCC
Confidence 99999887 4588899987543 2222 24556667899999999853 568
Q ss_pred hhHHhccCceEEeCCCCHHHHHHHHHHHHHHHH-HHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHH
Q 047225 169 PEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIY-ERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNL 247 (287)
Q Consensus 169 ~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~-~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~ 247 (287)
++|++|| ..+.|++|+.++..+|+..++.... .........+.++++++..++.. |....|+|.+++.+++++..+.
T Consensus 239 ~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~-~~~~~~vR~L~~~i~~~~~~aa 316 (543)
T 3m6a_A 239 GPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRY-YTREAGVRSLERQLAAICRKAA 316 (543)
T ss_dssp HHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHh-CChhhchhHHHHHHHHHHHHHH
Confidence 9999999 6899999999999999988774322 11111112578999999998873 4445688999999999888665
Q ss_pred HHH
Q 047225 248 AEI 250 (287)
Q Consensus 248 ~~~ 250 (287)
.+.
T Consensus 317 ~~~ 319 (543)
T 3m6a_A 317 KAI 319 (543)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 14
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.81 E-value=2.3e-18 Score=154.50 Aligned_cols=149 Identities=19% Similarity=0.325 Sum_probs=113.3
Q ss_pred CcEEEEEcCcccccH------------HHHHHHHHhhcCceeecCCCceeeccceEEEEee-----cCCchhhhhhccCC
Q 047225 89 PHSVILFDEIEKAHR------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTS-----NIGDSVIARESILG 151 (287)
Q Consensus 89 ~~~il~iDeid~~~~------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~-----n~~~~~~~~~~~~~ 151 (287)
+++++++||+|++.. .+|.+|+++++......+ -..++..+++||+++ |+.
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~-~~~~d~~~ilfI~~gaf~~~~~~----------- 317 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTK-HGMVKTDHILFIASGAFQVARPS----------- 317 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEET-TEEEECTTCEEEEEECCSSCCGG-----------
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccc-cceecCCcEEEEeccccccCChh-----------
Confidence 456999999998743 388899999997655442 245677889999987 332
Q ss_pred chHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHH----HHHHHHHHHHHhcCcEEEeChhHHHHHHHhcc-
Q 047225 152 SDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVD----IMLKEIYERLEAKNMELTVTHTFKKKLIEEGY- 226 (287)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~----~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~- 226 (287)
.+-|+|++||+..+.|++++.+++..|+. ..+.++...+...+..+.++++++.+|+..++
T Consensus 318 --------------dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~ 383 (444)
T 1g41_A 318 --------------DLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFR 383 (444)
T ss_dssp --------------GSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH
T ss_pred --------------hcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHH
Confidence 13489999998889999999999999994 34555556666667889999999999998644
Q ss_pred ----CCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEEEc
Q 047225 227 ----NPSYGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCD 267 (287)
Q Consensus 227 ----~~~~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 267 (287)
..+.|+|.+++.+++++.....+... ..++++.|+.+
T Consensus 384 ~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~----~~~~~~~i~~~ 424 (444)
T 1g41_A 384 VNEKTENIGARRLHTVMERLMDKISFSASD----MNGQTVNIDAA 424 (444)
T ss_dssp HHHHSCCCGGGHHHHHHHHHHHHHHHHGGG----CTTCEEEECHH
T ss_pred hccCCccCCchHHHHHHHHHHHHHHhhccc----cCCCeEEEeHH
Confidence 47899999999999999976655432 12355665543
No 15
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.81 E-value=2.1e-18 Score=151.21 Aligned_cols=170 Identities=18% Similarity=0.279 Sum_probs=128.1
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh-CCcEEEEE
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH-RPHSVILF 95 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~i 95 (287)
..+++|+||||||||++|+.+++.+ +.+++.++|...... +.+...+.. ...++|||
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~vl~l 112 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEKS-------------------GDLAAILTNLSEGDILFI 112 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCSH-------------------HHHHHHHHTCCTTCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccch-------------------hHHHHHHHhccCCCEEEE
Confidence 3469999999999999999999998 667888888654321 233333332 45579999
Q ss_pred cCcccccHHHHHHHHHhhcCceeecC-------CCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCC
Q 047225 96 DEIEKAHRDVLNVMLQLLDDGRVTDG-------KGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFR 168 (287)
Q Consensus 96 Deid~~~~~~~~~L~~~l~~~~~~~~-------~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
||++.+++..++.|++.++++.+..- ....+..+.+++|+++|... .+.
T Consensus 113 DEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~------------------------~l~ 168 (338)
T 3pfi_A 113 DEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAG------------------------MLS 168 (338)
T ss_dssp ETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGG------------------------GSC
T ss_pred echhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCcc------------------------ccC
Confidence 99999999999999999998764321 12233445688999998742 467
Q ss_pred hhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 169 PEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 169 ~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
++|.+||+..+.+++|+.+++..++...+... .+.+++++++.++. .|. .++|.+.+.+++++.
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~---------~~~~~~~~~~~l~~-~~~--G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQKAALKL---------NKTCEEKAALEIAK-RSR--STPRIALRLLKRVRD 232 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT---------TCEECHHHHHHHHH-TTT--TCHHHHHHHHHHHHH
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHH-HHC--cCHHHHHHHHHHHHH
Confidence 89999999999999999999999987666432 35789999999998 453 456888888776543
No 16
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=8.2e-19 Score=155.01 Aligned_cols=170 Identities=27% Similarity=0.330 Sum_probs=121.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||++|+++|..+ +.+++.+++++..... .| . +....+.++..++....+||||||+
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~sk~-----vG----e-se~~vr~lF~~Ar~~aP~IIFiDEi 250 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQKY-----IG----E-GSRMVRELFVMAREHAPSIIFMDEI 250 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSCSS-----TT----H-HHHHHHHHHHHHHHTCSEEEEEESS
T ss_pred ceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhccc-----cc----h-HHHHHHHHHHHHHHhCCceEeeecc
Confidence 49999999999999999999999 7899999988765431 00 0 0011245677777777799999999
Q ss_pred cccc-----------HH---HHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 99 EKAH-----------RD---VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 99 d~~~-----------~~---~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|.+- .. +...|+..|+.-. ...+++||+|||.+.
T Consensus 251 Dai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---------~~~~V~vIaATNrpd----------------------- 298 (405)
T 4b4t_J 251 DSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE---------TSKNIKIIMATNRLD----------------------- 298 (405)
T ss_dssp SCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT---------CCCCEEEEEEESCSS-----------------------
T ss_pred hhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC---------CCCCeEEEeccCChh-----------------------
Confidence 9542 12 3445555555311 013568999999874
Q ss_pred hcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChh-HHHHHHHhccCCCCCchhHHHHHHH
Q 047225 165 RRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHT-FKKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 165 ~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~-~~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
.++++|++ ||+..|.|++|+.++..+|++.++.+. .++.+ -++.++..+ .+++..+++..+..
T Consensus 299 -~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-----------~l~~dvdl~~lA~~t--~G~SGADi~~l~~e 364 (405)
T 4b4t_J 299 -ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM-----------NLTRGINLRKVAEKM--NGCSGADVKGVCTE 364 (405)
T ss_dssp -SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-----------BCCSSCCHHHHHHHC--CSCCHHHHHHHHHH
T ss_pred -hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC-----------CCCccCCHHHHHHHC--CCCCHHHHHHHHHH
Confidence 46899997 999999999999999999997665421 12222 266777653 46788999999998
Q ss_pred HHHHHH
Q 047225 242 LLEDNL 247 (287)
Q Consensus 242 ~~~~~~ 247 (287)
+...++
T Consensus 365 A~~~Ai 370 (405)
T 4b4t_J 365 AGMYAL 370 (405)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
No 17
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.80 E-value=2.1e-18 Score=150.36 Aligned_cols=183 Identities=19% Similarity=0.252 Sum_probs=133.6
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEE
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 93 (287)
..|..+++|+||||||||++|+++++.+ +.+++.+++++..... .|. . ......++........++|
T Consensus 48 ~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~~-----~g~----~-~~~~~~~f~~a~~~~~~vl 114 (322)
T 3eie_A 48 RKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSKW-----MGE----S-EKLVKQLFAMARENKPSII 114 (322)
T ss_dssp CCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHTTT-----GGG----H-HHHHHHHHHHHHHTSSEEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhhcc-----cch----H-HHHHHHHHHHHHhcCCeEE
Confidence 3444479999999999999999999998 7788899887654321 100 0 0011345555666666899
Q ss_pred EEcCcccccH-----------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 94 LFDEIEKAHR-----------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 94 ~iDeid~~~~-----------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
||||+|.+.. .++..|+..++.-.. ...+++||+++|.+.
T Consensus 115 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~v~vi~atn~~~--------------------- 165 (322)
T 3eie_A 115 FIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN--------DSQGVLVLGATNIPW--------------------- 165 (322)
T ss_dssp EEECGGGGSCC------CCTHHHHHHHHHHHGGGGT--------SCCCEEEEEEESCGG---------------------
T ss_pred EechhhhhhccCCCCcchHHHHHHHHHHHHhccccc--------cCCceEEEEecCChh---------------------
Confidence 9999998743 456777777763210 113568888998753
Q ss_pred HHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 163 LRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 163 ~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
.+++++.+||+..+.+++|+.++..+|++..+.. ....+++..++.++..+. +++.++++..++.+
T Consensus 166 ---~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~---------~~~~~~~~~l~~la~~t~--g~sg~di~~l~~~a 231 (322)
T 3eie_A 166 ---QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD---------TPCVLTKEDYRTLGAMTE--GYSGSDIAVVVKDA 231 (322)
T ss_dssp ---GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT---------CCCCCCHHHHHHHHHTTT--TCCHHHHHHHHHHH
T ss_pred ---hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc---------CCCCCCHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 3578999999999999999999999999776542 234678899999988643 56779999999999
Q ss_pred HHHHHHHHHH
Q 047225 243 LEDNLAEIIL 252 (287)
Q Consensus 243 ~~~~~~~~~~ 252 (287)
...++.+..-
T Consensus 232 ~~~a~r~~~~ 241 (322)
T 3eie_A 232 LMQPIRKIQS 241 (322)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9888876643
No 18
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.6e-18 Score=153.59 Aligned_cols=168 Identities=23% Similarity=0.320 Sum_probs=120.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~iD 96 (287)
.++|+||||||||++|+++|..+ +.+++.+++++..... .|-. ..+.++..++....+|||||
T Consensus 218 GvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~sk~------------vGesek~ir~lF~~Ar~~aP~IIfiD 282 (437)
T 4b4t_I 218 GVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQKY------------LGDGPRLCRQIFKVAGENAPSIVFID 282 (437)
T ss_dssp EEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCCSS------------SSHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhhcc------------CchHHHHHHHHHHHHHhcCCcEEEEe
Confidence 59999999999999999999999 7889999887765431 1111 12456677777777999999
Q ss_pred Ccccc-----------cHHHHH---HHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 97 EIEKA-----------HRDVLN---VMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 97 eid~~-----------~~~~~~---~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
|+|.+ +..... .|+..++.- . ...+++||+|||.+.
T Consensus 283 EiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~---~------~~~~ViVIaATNrpd--------------------- 332 (437)
T 4b4t_I 283 EIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF---D------DRGDVKVIMATNKIE--------------------- 332 (437)
T ss_dssp EESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC---C------CSSSEEEEEEESCST---------------------
T ss_pred hhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc---C------CCCCEEEEEeCCChh---------------------
Confidence 99954 112333 344444321 0 113568999999864
Q ss_pred HHhcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChh-HHHHHHHhccCCCCCchhHHHHH
Q 047225 163 LRRRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHT-FKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 163 ~~~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~-~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
.++++|++ ||+..|.|+.|+.++..+|++.++.+. .++++ -++.++..+ .+++..+++.++
T Consensus 333 ---~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-----------~l~~dvdl~~LA~~T--~GfSGADI~~l~ 396 (437)
T 4b4t_I 333 ---TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-----------NLSEDVNLETLVTTK--DDLSGADIQAMC 396 (437)
T ss_dssp ---TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-----------CBCSCCCHHHHHHHC--CSCCHHHHHHHH
T ss_pred ---hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-----------CCCCcCCHHHHHHhC--CCCCHHHHHHHH
Confidence 46789987 999999999999999999997666431 22222 266777653 467889999999
Q ss_pred HHHHHHHH
Q 047225 240 GRLLEDNL 247 (287)
Q Consensus 240 ~~~~~~~~ 247 (287)
..+...++
T Consensus 397 ~eA~~~Ai 404 (437)
T 4b4t_I 397 TEAGLLAL 404 (437)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98877655
No 19
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.78 E-value=5.7e-18 Score=149.51 Aligned_cols=178 Identities=19% Similarity=0.250 Sum_probs=129.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
.+++|+||||||||++|+++++.+ +.+++.+++++.... ..| .. ......++........+||||||
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~~-----~~g----~~-~~~~~~~f~~a~~~~~~vl~iDE 151 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK-----WMG----ES-EKLVKQLFAMARENKPSIIFIDQ 151 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHSC-----C-------C-HHHHHHHHHHHHHTSSEEEEEEC
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhhh-----hcc----hH-HHHHHHHHHHHHHcCCeEEEEec
Confidence 369999999999999999999999 678888888754322 111 00 00113445555556668999999
Q ss_pred cccccH-----------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 98 IEKAHR-----------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 98 id~~~~-----------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
+|.+.. .+++.|+..++.-.. ...+++||+++|.+. .
T Consensus 152 id~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~v~vI~atn~~~------------------------~ 199 (355)
T 2qp9_X 152 VDALTGTRGEGESEASRRIKTELLVQMNGVGN--------DSQGVLVLGATNIPW------------------------Q 199 (355)
T ss_dssp GGGGTC------CTHHHHHHHHHHHHHHHCC-----------CCEEEEEEESCGG------------------------G
T ss_pred hHhhcccCCCCcchHHHHHHHHHHHHhhcccc--------cCCCeEEEeecCCcc------------------------c
Confidence 998753 356677777763110 113568888998753 3
Q ss_pred CChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 047225 167 FRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDN 246 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~ 246 (287)
+++++++||+..+.+++|+.++..+|+...+.. ....+++..++.|+..+ .+++.+++..++++++..+
T Consensus 200 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~---------~~~~~~~~~l~~la~~t--~G~sg~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 200 LDSAIRRRFERRIYIPLPDLAARTTMFEINVGD---------TPSVLTKEDYRTLGAMT--EGYSGSDIAVVVKDALMQP 268 (355)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT---------SCBCCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh---------CCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999776542 13456888999998864 3567799999999999988
Q ss_pred HHHHH
Q 047225 247 LAEII 251 (287)
Q Consensus 247 ~~~~~ 251 (287)
+.+..
T Consensus 269 ~~~~~ 273 (355)
T 2qp9_X 269 IRKIQ 273 (355)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 20
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=2.4e-18 Score=154.15 Aligned_cols=169 Identities=20% Similarity=0.275 Sum_probs=120.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~iD 96 (287)
.++|+||||||||++|+++|..+ +.+++.+++++..... .|.. ..+.++........+|||||
T Consensus 217 GvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~~~------------vGese~~ir~lF~~A~~~aP~IifiD 281 (434)
T 4b4t_M 217 GALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQMY------------IGEGAKLVRDAFALAKEKAPTIIFID 281 (434)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCSSC------------SSHHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred eeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhhcc------------cchHHHHHHHHHHHHHhcCCeEEeec
Confidence 59999999999999999999999 7889999987765431 1111 12355666666666999999
Q ss_pred Ccccc-----------cHHH---HHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 97 EIEKA-----------HRDV---LNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 97 eid~~-----------~~~~---~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
|+|.+ +... ...|+..++.-. ...+++||+|||.+.
T Consensus 282 EiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~---------~~~~ViVIaaTNrp~--------------------- 331 (434)
T 4b4t_M 282 ELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS---------SDDRVKVLAATNRVD--------------------- 331 (434)
T ss_dssp CTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC---------SSCSSEEEEECSSCC---------------------
T ss_pred chhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC---------CCCCEEEEEeCCCch---------------------
Confidence 99953 1223 344555554310 013568999999864
Q ss_pred HHhcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChh-HHHHHHHhccCCCCCchhHHHHH
Q 047225 163 LRRRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHT-FKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 163 ~~~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~-~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
.++++|++ ||+..|.|++|+.++..+|++.++.+. . ++.+ -++.++.. ..+++..+++.++
T Consensus 332 ---~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-------~----~~~dvdl~~lA~~--t~G~sGADi~~l~ 395 (434)
T 4b4t_M 332 ---VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM-------T----TDDDINWQELARS--TDEFNGAQLKAVT 395 (434)
T ss_dssp ---CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS-------C----BCSCCCHHHHHHH--CSSCCHHHHHHHH
T ss_pred ---hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC-------C----CCCcCCHHHHHHh--CCCCCHHHHHHHH
Confidence 46789987 999999999999999999998776542 1 2222 25667765 3467889999999
Q ss_pred HHHHHHHHH
Q 047225 240 GRLLEDNLA 248 (287)
Q Consensus 240 ~~~~~~~~~ 248 (287)
..+...++.
T Consensus 396 ~eA~~~a~r 404 (434)
T 4b4t_M 396 VEAGMIALR 404 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988776653
No 21
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.78 E-value=1.5e-17 Score=144.91 Aligned_cols=180 Identities=19% Similarity=0.245 Sum_probs=130.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
.+++|+||||||||++|+++++.+. ..+++.+++++.... ..| .. ......++........++|||||
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~~-----~~g----~~-~~~~~~lf~~a~~~~~~vl~iDE 113 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK-----WLG----ES-EKLVKNLFQLARENKPSIIFIDE 113 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCS-----SCC----SC-HHHHHHHHHHHHHTSSEEEEEET
T ss_pred ceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHhh-----hhh----HH-HHHHHHHHHHHHhcCCcEEEeec
Confidence 3699999999999999999999872 457788887654422 111 00 01123455556666678999999
Q ss_pred ccccc-----------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 98 IEKAH-----------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 98 id~~~-----------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
+|.+. ..+++.|+..++.-. ....+++||+++|.+. .
T Consensus 114 id~l~~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~~v~vI~atn~~~------------------------~ 161 (322)
T 1xwi_A 114 IDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDGILVLGATNIPW------------------------V 161 (322)
T ss_dssp TTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS--------SCCTTEEEEEEESCTT------------------------T
T ss_pred HHHhccccccccchHHHHHHHHHHHHHhccc--------ccCCCEEEEEecCCcc------------------------c
Confidence 99872 245566666665321 1123678899998763 3
Q ss_pred CChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 047225 167 FRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDN 246 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~ 246 (287)
+++++++||+..+.+++|+.++..+|++..+.. ....+++..++.++..+ .+++.+++...++.+...+
T Consensus 162 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~---------~~~~l~~~~l~~la~~t--~G~sgadl~~l~~~A~~~a 230 (322)
T 1xwi_A 162 LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT---------TQNSLTEADFRELGRKT--DGYSGADISIIVRDALMQP 230 (322)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT---------CCBCCCHHHHHHHHHTC--TTCCHHHHHHHHHHHHTHH
T ss_pred CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc---------CCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999776542 23457888999998864 4667799999999999988
Q ss_pred HHHHHH
Q 047225 247 LAEIIL 252 (287)
Q Consensus 247 ~~~~~~ 252 (287)
+.+...
T Consensus 231 ~r~~~~ 236 (322)
T 1xwi_A 231 VRKVQS 236 (322)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876654
No 22
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=6.7e-18 Score=151.12 Aligned_cols=168 Identities=24% Similarity=0.333 Sum_probs=120.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~iD 96 (287)
.++|+||||||||++|+++|+.+ +.+++.+++++..... .|.. ..+.++..++....+|+|||
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~~~------------~Ge~e~~ir~lF~~A~~~aP~IifiD 272 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVHKY------------LGEGPRMVRDVFRLARENAPSIIFID 272 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCCSS------------CSHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhccc------------cchhHHHHHHHHHHHHHcCCCeeech
Confidence 59999999999999999999999 7899999987755321 1111 12456666777777999999
Q ss_pred Cccccc--------------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 97 EIEKAH--------------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 97 eid~~~--------------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
|+|.+- ..+...|+..++.-. ...+++||+|||.+.
T Consensus 273 EiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~---------~~~~v~vI~aTN~~~--------------------- 322 (428)
T 4b4t_K 273 EVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD---------QSTNVKVIMATNRAD--------------------- 322 (428)
T ss_dssp CTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC---------SSCSEEEEEEESCSS---------------------
T ss_pred hhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC---------CCCCEEEEEecCChh---------------------
Confidence 999431 134555665555210 113568999999864
Q ss_pred HHhcCChhHHh--ccCceEEeC-CCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChh-HHHHHHHhccCCCCCchhHHHH
Q 047225 163 LRRRFRPEFLN--RIDEVIVFR-QLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHT-FKKKLIEEGYNPSYGARPLRRA 238 (287)
Q Consensus 163 ~~~~~~~~l~~--r~~~~i~~~-~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~-~~~~l~~~~~~~~~~~r~l~~~ 238 (287)
.++|+|++ ||+..|.|| +|+.++...|++.++.+. .+..+ -++.++..+ .+++..+++..
T Consensus 323 ---~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~-----------~l~~~~dl~~lA~~t--~G~sgadi~~l 386 (428)
T 4b4t_K 323 ---TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM-----------SLAPEADLDSLIIRN--DSLSGAVIAAI 386 (428)
T ss_dssp ---SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS-----------CBCTTCCHHHHHHHT--TTCCHHHHHHH
T ss_pred ---hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC-----------CCCcccCHHHHHHHC--CCCCHHHHHHH
Confidence 46899997 999999997 789999999997766431 12222 267777653 46678999999
Q ss_pred HHHHHHHHH
Q 047225 239 IGRLLEDNL 247 (287)
Q Consensus 239 i~~~~~~~~ 247 (287)
++.+...++
T Consensus 387 ~~eA~~~a~ 395 (428)
T 4b4t_K 387 MQEAGLRAV 395 (428)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998877654
No 23
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=8.1e-18 Score=150.53 Aligned_cols=168 Identities=24% Similarity=0.289 Sum_probs=119.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~iD 96 (287)
.++|+||||||||++|+++|..+ +.+++.+++++..... .|.. ..+.++...+....+|||||
T Consensus 245 GILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~sk~------------vGesek~ir~lF~~Ar~~aP~IIfiD 309 (467)
T 4b4t_H 245 GILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQKY------------VGEGARMVRELFEMARTKKACIIFFD 309 (467)
T ss_dssp EEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCCCS------------SSHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred ceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhccc------------CCHHHHHHHHHHHHHHhcCCceEeec
Confidence 59999999999999999999999 7889999987765431 1111 12456666777777999999
Q ss_pred Cccccc-----------HH---HHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 97 EIEKAH-----------RD---VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 97 eid~~~-----------~~---~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
|+|.+- .. ....|+..|+... ...+++||+|||.+.
T Consensus 310 EiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---------~~~~ViVIaATNrpd--------------------- 359 (467)
T 4b4t_H 310 EIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD---------PRGNIKVMFATNRPN--------------------- 359 (467)
T ss_dssp CCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC---------CTTTEEEEEECSCTT---------------------
T ss_pred ccccccccccCcCCCccHHHHHHHHHHHHHhhccC---------CCCcEEEEeCCCCcc---------------------
Confidence 999541 12 3334444444210 113568999999864
Q ss_pred HHhcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChh-HHHHHHHhccCCCCCchhHHHHH
Q 047225 163 LRRRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHT-FKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 163 ~~~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~-~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
.++++|++ ||+..|.|+.|+.++..+|++.++... .++.+ -++.|+..+ .+++..+++.+|
T Consensus 360 ---~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~-----------~l~~dvdl~~LA~~T--~GfSGADI~~l~ 423 (467)
T 4b4t_H 360 ---TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM-----------SVERGIRWELISRLC--PNSTGAELRSVC 423 (467)
T ss_dssp ---SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS-----------CBCSSCCHHHHHHHC--CSCCHHHHHHHH
T ss_pred ---cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC-----------CCCCCCCHHHHHHHC--CCCCHHHHHHHH
Confidence 46789987 999999999999999999997665431 12222 256666653 466789999999
Q ss_pred HHHHHHHH
Q 047225 240 GRLLEDNL 247 (287)
Q Consensus 240 ~~~~~~~~ 247 (287)
..+...++
T Consensus 424 ~eAa~~Ai 431 (467)
T 4b4t_H 424 TEAGMFAI 431 (467)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
No 24
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=9.5e-18 Score=150.38 Aligned_cols=169 Identities=22% Similarity=0.281 Sum_probs=120.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~iD 96 (287)
.++|+||||||||++|+++|+.+ +.+++.+++++..... .|-. ....++........+|||||
T Consensus 217 GvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~sk~------------~Gese~~ir~~F~~A~~~~P~IifiD 281 (437)
T 4b4t_L 217 GVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVDKY------------IGESARIIREMFAYAKEHEPCIIFMD 281 (437)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCCSS------------SSHHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhcccc------------chHHHHHHHHHHHHHHhcCCceeeee
Confidence 59999999999999999999999 7889999987765431 1111 12456666777777999999
Q ss_pred Cccccc-----------H---HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 97 EIEKAH-----------R---DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 97 eid~~~-----------~---~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
|+|.+- . .....|+..++.-. ...+++||+|||.+.
T Consensus 282 EiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---------~~~~vivI~ATNrp~--------------------- 331 (437)
T 4b4t_L 282 EVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD---------NLGQTKIIMATNRPD--------------------- 331 (437)
T ss_dssp CCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS---------CTTSSEEEEEESSTT---------------------
T ss_pred cccccccccccCCCCcchHHHHHHHHHHHHhhccc---------CCCCeEEEEecCCch---------------------
Confidence 999541 1 23445555555311 113568999999864
Q ss_pred HHhcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 163 LRRRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 163 ~~~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
.++|+|++ ||+..|.|+.|+.++..+|++.++... . +. ++--++.++.. ..+++..+++.++.
T Consensus 332 ---~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-------~--~~-~d~dl~~lA~~--t~G~sGADi~~l~~ 396 (437)
T 4b4t_L 332 ---TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV-------K--KT-GEFDFEAAVKM--SDGFNGADIRNCAT 396 (437)
T ss_dssp ---SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS-------C--BC-SCCCHHHHHHT--CCSCCHHHHHHHHH
T ss_pred ---hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC-------C--CC-cccCHHHHHHh--CCCCCHHHHHHHHH
Confidence 46788886 599999999999999999997776432 1 11 11225666664 44678899999998
Q ss_pred HHHHHHH
Q 047225 241 RLLEDNL 247 (287)
Q Consensus 241 ~~~~~~~ 247 (287)
.+...++
T Consensus 397 eA~~~ai 403 (437)
T 4b4t_L 397 EAGFFAI 403 (437)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776554
No 25
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.76 E-value=3.8e-17 Score=148.36 Aligned_cols=180 Identities=19% Similarity=0.251 Sum_probs=130.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
.+++|+||||||||++|++++..+. ..+++.+++++.... ..|.. ......++..+.....+||||||
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~~~-----~~g~~-----~~~~~~~f~~a~~~~~~vl~iDE 235 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK-----WLGES-----EKLVKNLFQLARENKPSIIFIDE 235 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC--------------C-----CCTHHHHHHHHHHSCSEEEEESC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHHhh-----hcchH-----HHHHHHHHHHHHHcCCeEEEEec
Confidence 4799999999999999999999872 457888888765422 11111 11124566666666679999999
Q ss_pred cccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 98 IEKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 98 id~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
+|.+ ...+++.|+..++.-. ....+++||++||.+. .
T Consensus 236 id~l~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~~v~vI~atn~~~------------------------~ 283 (444)
T 2zan_A 236 IDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDGILVLGATNIPW------------------------V 283 (444)
T ss_dssp TTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS--------CCCSSCEEEEEESCGG------------------------G
T ss_pred hHhhccCCCCccccHHHHHHHHHHHHHhCcc--------cCCCCEEEEecCCCcc------------------------c
Confidence 9977 2356666777665421 1124678999999763 3
Q ss_pred CChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 047225 167 FRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDN 246 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~ 246 (287)
+++++++||+..+.+++|+.++...|+...+.. ....+++..++.|+..+ .+++.+++..++..++..+
T Consensus 284 ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~---------~~~~l~~~~l~~la~~t--~G~sgadl~~l~~~a~~~a 352 (444)
T 2zan_A 284 LDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS---------TQNSLTEADFQELGRKT--DGYSGADISIIVRDALMQP 352 (444)
T ss_dssp SCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT---------SCEECCHHHHHHHHHHT--TTCCHHHHHHHHHHHHTHH
T ss_pred cCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc---------CCCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHH
Confidence 578999999989999999999999999776542 24677899999998864 4667899999999999988
Q ss_pred HHHHHH
Q 047225 247 LAEIIL 252 (287)
Q Consensus 247 ~~~~~~ 252 (287)
+.+...
T Consensus 353 ~r~~~~ 358 (444)
T 2zan_A 353 VRKVQS 358 (444)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 876643
No 26
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.74 E-value=2.8e-17 Score=143.06 Aligned_cols=166 Identities=18% Similarity=0.220 Sum_probs=123.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh--CCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH--RPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~il~iD 96 (287)
+++|+||||||||++++.+++.+ +.+++.++|...... ..+...+.. ...++||||
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~-------------------~~l~~~l~~~~~~~~~l~lD 97 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKP-------------------GDLAAILANSLEEGDILFID 97 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSH-------------------HHHHHHHTTTCCTTCEEEET
T ss_pred cEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCCh-------------------HHHHHHHHHhccCCCEEEEE
Confidence 69999999999999999999998 567778887655332 233333333 345799999
Q ss_pred CcccccHHHHHHHHHhhcCceeecCCC-------ceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 97 EIEKAHRDVLNVMLQLLDDGRVTDGKG-------QTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~~~~~~~~g-------~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
|++.++...+..|+++++++.+..-.+ .....+++.+|+++|... .+.+
T Consensus 98 Ei~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~------------------------~~~~ 153 (324)
T 1hqc_A 98 EIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPG------------------------LITA 153 (324)
T ss_dssp TTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCS------------------------SCSC
T ss_pred CCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcc------------------------cCCH
Confidence 999999999999999999876442111 122335678999998752 4568
Q ss_pred hHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
+|.+||+..+.+++|+.+++..++...+... ...+++++++.++..+ ..++|.+...++.+
T Consensus 154 ~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~---------~~~~~~~~~~~l~~~~---~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 154 PLLSRFGIVEHLEYYTPEELAQGVMRDARLL---------GVRITEEAALEIGRRS---RGTMRVAKRLFRRV 214 (324)
T ss_dssp STTTTCSCEEECCCCCHHHHHHHHHHHHHTT---------TCCCCHHHHHHHHHHS---CSCHHHHHHHHHHH
T ss_pred HHHhcccEEEecCCCCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHH
Confidence 8999998899999999999988886655421 3468999999998873 24567777776654
No 27
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.5e-17 Score=143.55 Aligned_cols=219 Identities=12% Similarity=0.057 Sum_probs=138.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC-------CCceEEecccccccccch-----hhhhCCCCCCCcccchhhHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS-------KEAMVRIDMSEYMEKHTV-----SKFFGSPPGYVGFENGGQLTEAVR 86 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~-------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 86 (287)
+++|+||||||||++++.+++.+... ...++++||....+...+ ..+.|..... + .....+...+.
T Consensus 47 ~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~-~-~~~~~L~~~f~ 124 (318)
T 3te6_A 47 LFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCG-D-ISLEALNFYIT 124 (318)
T ss_dssp EEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--C-C-CCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCc-h-HHHHHHHHHHH
Confidence 79999999999999999999998421 346788999876654221 1232321111 1 11112222222
Q ss_pred -----hCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHH
Q 047225 87 -----HRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAE 161 (287)
Q Consensus 87 -----~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~ 161 (287)
.....|++|||+|.+. .++.|+.+++.... ...++.+|+++|......
T Consensus 125 ~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~--------~~s~~~vI~i~n~~d~~~----------------- 177 (318)
T 3te6_A 125 NVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISS--------KNSKLSIICVGGHNVTIR----------------- 177 (318)
T ss_dssp HSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHC--------SSCCEEEEEECCSSCCCH-----------------
T ss_pred HhhhccCCceEEEEecHHHhh--cchHHHHHHhcccc--------cCCcEEEEEEecCcccch-----------------
Confidence 3445799999999987 56777777763211 113557888887642110
Q ss_pred HHHhcCChhHHhccC-ceEEeCCCCHHHHHHHHHHHHHHHHHHH----------------H---------h-cCcEEEeC
Q 047225 162 ELRRRFRPEFLNRID-EVIVFRQLNKMQLMEIVDIMLKEIYERL----------------E---------A-KNMELTVT 214 (287)
Q Consensus 162 ~~~~~~~~~l~~r~~-~~i~~~~~~~~~~~~il~~~l~~~~~~~----------------~---------~-~~~~~~i~ 214 (287)
..+++.+.+|+. ..+.|+|++.+++.+|++..+....... . . ....+.++
T Consensus 178 ---~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 254 (318)
T 3te6_A 178 ---EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKIN 254 (318)
T ss_dssp ---HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECC
T ss_pred ---hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccC
Confidence 012356788986 5699999999999999998887642110 0 0 00124789
Q ss_pred hhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEEEcCCc
Q 047225 215 HTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNLAEIILTGYIQVGDSVTMDCDSGG 270 (287)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 270 (287)
++++++++........++|..-..+.+++..+-.++..++... .++++|+.+.-.
T Consensus 255 ~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ae~e~~~k~~~~-~~~~~i~~~~~~ 309 (318)
T 3te6_A 255 NKITQLIAKNVANVSGSTEKAFKICEAAVEISKKDFVRKGGLQ-KGKLVVSQEMVP 309 (318)
T ss_dssp HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHTTEE-TTEECCSEECCT
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHhccCCC-CCcEEeeHHHHH
Confidence 9999999986444455666666777777777777776666555 466666665443
No 28
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.73 E-value=8.9e-17 Score=141.36 Aligned_cols=133 Identities=11% Similarity=0.109 Sum_probs=94.6
Q ss_pred CcEEEEEcCcccccHHHHHHHHHhhcCceeecC-CCceeec-cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 89 PHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDG-KGQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 89 ~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~-~g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
..+++||||++.++...++.|+++++.+..... .|..... .++++|+++|+... .
T Consensus 144 ~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~-----------------------~ 200 (350)
T 1g8p_A 144 NRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG-----------------------D 200 (350)
T ss_dssp TTEEEEETTGGGSCHHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC-----------------------C
T ss_pred CCCEEEEeChhhCCHHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCC-----------------------C
Confidence 358999999999999999999999998764443 2444433 37889999997432 4
Q ss_pred CChhHHhccCceEEeCCCC-HHHHHHHHHHHHHH--------------------HHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 167 FRPEFLNRIDEVIVFRQLN-KMQLMEIVDIMLKE--------------------IYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~-~~~~~~il~~~l~~--------------------~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
++++|++||+..+.+++|+ .++..+|+...+.. ...........+.++++++++++...
T Consensus 201 l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~ 280 (350)
T 1g8p_A 201 LRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALC 280 (350)
T ss_dssp CCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHH
T ss_pred CCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 6789999997779999995 55655777663221 00011111124589999999999998
Q ss_pred cCCCC-CchhHHHHHHHHHH
Q 047225 226 YNPSY-GARPLRRAIGRLLE 244 (287)
Q Consensus 226 ~~~~~-~~r~l~~~i~~~~~ 244 (287)
+..+. ++|.+.+.++.+..
T Consensus 281 ~~~~~~~~R~~~~ll~~a~~ 300 (350)
T 1g8p_A 281 IALGSDGLRGELTLLRSARA 300 (350)
T ss_dssp HHSSSCSHHHHHHHHHHHHH
T ss_pred HHhCCCCccHHHHHHHHHHH
Confidence 87665 67777777765544
No 29
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.73 E-value=3.7e-17 Score=148.12 Aligned_cols=170 Identities=15% Similarity=0.272 Sum_probs=114.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
++++|+||||||||++++.+++.+ +.+++.+++..... ..+...+ .........+...+|||||
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~-~~ir~~~------------~~a~~~~~~~~~~iLfIDE 114 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGV-KEIREAI------------ERARQNRNAGRRTILFVDE 114 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCH-HHHHHHH------------HHHHHHHHTTCCEEEEEET
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCH-HHHHHHH------------HHHHHhhhcCCCcEEEEeC
Confidence 379999999999999999999998 56677776543211 1111111 0111122234568999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE 177 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 177 (287)
++.++...++.|++.++++. +++|++++.... ..+.++|++|+ .
T Consensus 115 I~~l~~~~q~~LL~~le~~~-------------v~lI~att~n~~----------------------~~l~~aL~sR~-~ 158 (447)
T 3pvs_A 115 VHRFNKSQQDAFLPHIEDGT-------------ITFIGATTENPS----------------------FELNSALLSRA-R 158 (447)
T ss_dssp TTCC------CCHHHHHTTS-------------CEEEEEESSCGG----------------------GSSCHHHHTTE-E
T ss_pred hhhhCHHHHHHHHHHHhcCc-------------eEEEecCCCCcc----------------------cccCHHHhCce-e
Confidence 99999999999999999742 356666644322 14678999999 7
Q ss_pred eEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 178 VIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 178 ~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
.+.++|++.+++..++...+......+. +..+.+++++++.++.. + ..++|.+.+.++.++.
T Consensus 159 v~~l~~l~~edi~~il~~~l~~~~~~~~--~~~~~i~~~al~~L~~~-~--~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 159 VYLLKSLSTEDIEQVLTQAMEDKTRGYG--GQDIVLPDETRRAIAEL-V--NGDARRALNTLEMMAD 220 (447)
T ss_dssp EEECCCCCHHHHHHHHHHHHHCTTTSST--TSSEECCHHHHHHHHHH-H--CSCHHHHHHHHHHHHH
T ss_pred EEeeCCcCHHHHHHHHHHHHHHHhhhhc--cccCcCCHHHHHHHHHH-C--CCCHHHHHHHHHHHHH
Confidence 8999999999999999888765322221 13588999999999997 4 3466777777775544
No 30
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.73 E-value=1.3e-16 Score=137.66 Aligned_cols=176 Identities=26% Similarity=0.377 Sum_probs=123.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||+++++++..+ +.+++.+++++... ..+|.... ....++........+++||||+
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l~~-----~~~g~~~~-----~~~~~f~~a~~~~p~il~iDEi 117 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLT-----MWFGESEA-----NVREIFDKARQAAPCVLFFDEL 117 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHHHH-----HHHTTCTT-----HHHHHHHHHHHTCSEEEEECST
T ss_pred eEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHHHh-----hhcCchHH-----HHHHHHHHHHhcCCeEEEEECh
Confidence 69999999999999999999998 57888888876542 22332111 1234555555556689999999
Q ss_pred ccccHH--------------HHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 99 EKAHRD--------------VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 99 d~~~~~--------------~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|.+... ++..|+..++.-. ...+++||++||.+.
T Consensus 118 d~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~---------~~~~v~vi~atn~~~----------------------- 165 (301)
T 3cf0_A 118 DSIAKARGGNIGDGGGAADRVINQILTEMDGMS---------TKKNVFIIGATNRPD----------------------- 165 (301)
T ss_dssp THHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC---------TTSSEEEEEEESCGG-----------------------
T ss_pred HHHhhccCCCcCCcchHHHHHHHHHHHHhhccc---------CCCCEEEEEecCCcc-----------------------
Confidence 976543 4577777776311 113578999999753
Q ss_pred hcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 165 RRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 165 ~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
.+++++++ ||+..+.+++|+.++..+|++..+... +.. .+..++.++.. ..+++.++++.+++++
T Consensus 166 -~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~-------~~~---~~~~~~~la~~--~~g~sg~dl~~l~~~a 232 (301)
T 3cf0_A 166 -IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS-------PVA---KDVDLEFLAKM--TNGFSGADLTEICQRA 232 (301)
T ss_dssp -GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-------CBC---SSCCHHHHHHT--CSSCCHHHHHHHHHHH
T ss_pred -ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC-------CCC---ccchHHHHHHH--cCCCCHHHHHHHHHHH
Confidence 34678887 999899999999999999987666432 111 22234555554 3356678999999999
Q ss_pred HHHHHHHHHH
Q 047225 243 LEDNLAEIIL 252 (287)
Q Consensus 243 ~~~~~~~~~~ 252 (287)
+..++.+.+.
T Consensus 233 ~~~a~~~~~~ 242 (301)
T 3cf0_A 233 CKLAIRESIE 242 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988876643
No 31
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.72 E-value=4.9e-17 Score=144.07 Aligned_cols=192 Identities=17% Similarity=0.192 Sum_probs=117.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccccc-----chhhh---------------------------
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKH-----TVSKF--------------------------- 65 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-----~~~~~--------------------------- 65 (287)
.+++|+||||||||++++++++.+. ...+++.+++....... .....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~ 149 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINS 149 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhc
Confidence 4799999999999999999999984 23466777765422211 00000
Q ss_pred -----hCCCCCCCcc--cchhhHH-HH----HHhCC----cEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeecc
Q 047225 66 -----FGSPPGYVGF--ENGGQLT-EA----VRHRP----HSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLK 129 (287)
Q Consensus 66 -----~~~~~~~~~~--~~~~~~~-~~----~~~~~----~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~ 129 (287)
.+...+..+. ......+ .. ...+. +++|||||+|.++.+.++.|++.+++....
T Consensus 150 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~---------- 219 (368)
T 3uk6_A 150 RTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAP---------- 219 (368)
T ss_dssp ----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCC----------
T ss_pred ccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccChHHHHHHHHHhhCcCCC----------
Confidence 0000011110 0001111 11 11122 359999999999999999999999874211
Q ss_pred ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCc
Q 047225 130 NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNM 209 (287)
Q Consensus 130 ~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~ 209 (287)
+++++++.+...+.... . .....++++|.+|| ..+.|+||+.+++.+++...+...
T Consensus 220 --~~ii~t~~~~~~i~~t~---~---------~~~~~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~~--------- 275 (368)
T 3uk6_A 220 --VLIMATNRGITRIRGTS---Y---------QSPHGIPIDLLDRL-LIVSTTPYSEKDTKQILRIRCEEE--------- 275 (368)
T ss_dssp --EEEEEESCSEEECBTSS---C---------EEETTCCHHHHTTE-EEEEECCCCHHHHHHHHHHHHHHT---------
T ss_pred --eeeeecccceeeeeccC---C---------CCcccCCHHHHhhc-cEEEecCCCHHHHHHHHHHHHHHc---------
Confidence 24444442210000000 0 00014678999999 568999999999999997776531
Q ss_pred EEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 047225 210 ELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDN 246 (287)
Q Consensus 210 ~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~ 246 (287)
.+.+++++++.++..++. .++|.+.+.+++++..+
T Consensus 276 ~~~~~~~~l~~l~~~~~~--G~~r~~~~ll~~a~~~A 310 (368)
T 3uk6_A 276 DVEMSEDAYTVLTRIGLE--TSLRYAIQLITAASLVC 310 (368)
T ss_dssp TCCBCHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Confidence 356899999999988653 45688888877766543
No 32
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.72 E-value=1.3e-16 Score=142.62 Aligned_cols=175 Identities=18% Similarity=0.198 Sum_probs=121.8
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
.+++|+||||||||++|++++..+ +.+++.++|++..... .|. . ......++..+.....++|||||
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~~-----~g~----~-~~~~~~~~~~a~~~~~~il~iDE 215 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSKY-----VGE----G-EKLVRALFAVARELQPSIIFIDQ 215 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC----------------C-HHHHHHHHHHHHHSSSEEEEEET
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhccc-----cch----H-HHHHHHHHHHHHhcCCeEEEEEC
Confidence 379999999999999999999998 7789999997755321 110 0 00113455555556668999999
Q ss_pred cccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 98 IEKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 98 id~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
+|.+ ...++..|+..++..... ...+++||+++|... .
T Consensus 216 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~~v~vI~atn~~~------------------------~ 264 (389)
T 3vfd_A 216 VDSLLCERREGEHDASRRLKTEFLIEFDGVQSA-------GDDRVLVMGATNRPQ------------------------E 264 (389)
T ss_dssp GGGGC--------CTHHHHHHHHHHHHHHHC------------CEEEEEEESCGG------------------------G
T ss_pred chhhcccCCCccchHHHHHHHHHHHHhhccccc-------CCCCEEEEEecCCch------------------------h
Confidence 9987 445666777777632111 013568899998742 3
Q ss_pred CChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 047225 167 FRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDN 246 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~ 246 (287)
+.+++++||+..+.+++|+.++..+++...+.. ....++++.+..++.... +++.+++..++..+...+
T Consensus 265 l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~---------~~~~l~~~~~~~la~~~~--g~~~~~l~~L~~~a~~~~ 333 (389)
T 3vfd_A 265 LDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK---------QGSPLTQKELAQLARMTD--GYSGSDLTALAKDAALGP 333 (389)
T ss_dssp CCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT---------SCCCSCHHHHHHHHHHTT--TCCHHHHHHHHHHHTTHH
T ss_pred cCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh---------cCCCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHH
Confidence 578999999888999999999999999766543 135688899999988643 445567777776655544
Q ss_pred H
Q 047225 247 L 247 (287)
Q Consensus 247 ~ 247 (287)
+
T Consensus 334 ~ 334 (389)
T 3vfd_A 334 I 334 (389)
T ss_dssp H
T ss_pred H
Confidence 4
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.72 E-value=2.9e-16 Score=138.76 Aligned_cols=175 Identities=16% Similarity=0.224 Sum_probs=124.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++|+++++.+ +.+++.+++++..... .| . .......++........++|||||+
T Consensus 119 ~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~~-----~g----~-~~~~~~~~~~~a~~~~~~vl~iDEi 185 (357)
T 3d8b_A 119 GILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSKW-----VG----E-GEKMVRALFAVARCQQPAVIFIDEI 185 (357)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCSS-----TT----H-HHHHHHHHHHHHHHTCSEEEEEETH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhccc-----cc----h-HHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 69999999999999999999998 6788899987654321 00 0 0001123455555566689999999
Q ss_pred cccc-----------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKAH-----------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~~-----------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+. ..++..|+..++..... ...+++||+++|... .+
T Consensus 186 d~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-------~~~~v~vI~atn~~~------------------------~l 234 (357)
T 3d8b_A 186 DSLLSQRGDGEHESSRRIKTEFLVQLDGATTS-------SEDRILVVGATNRPQ------------------------EI 234 (357)
T ss_dssp HHHTBC------CHHHHHHHHHHHHHHC-----------CCCCEEEEEEESCGG------------------------GB
T ss_pred hhhhccCCCCcchHHHHHHHHHHHHHhccccc-------CCCCEEEEEecCChh------------------------hC
Confidence 8762 24566677666642111 113568888998753 34
Q ss_pred ChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHH
Q 047225 168 RPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNL 247 (287)
Q Consensus 168 ~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~ 247 (287)
.+++++||+..+.+++|+.++..+++...+... ...++++.++.++..+ .+++.++++.+++.+...++
T Consensus 235 ~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~l~~~~l~~la~~t--~G~s~~dl~~l~~~a~~~~i 303 (357)
T 3d8b_A 235 DEAARRRLVKRLYIPLPEASARKQIVINLMSKE---------QCCLSEEEIEQIVQQS--DAFSGADMTQLCREASLGPI 303 (357)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTS---------CBCCCHHHHHHHHHHT--TTCCHHHHHHHHHHHHTHHH
T ss_pred CHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhc---------CCCccHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 689999998889999999999999997766431 3467899999998864 35567899988887776555
Q ss_pred H
Q 047225 248 A 248 (287)
Q Consensus 248 ~ 248 (287)
.
T Consensus 304 r 304 (357)
T 3d8b_A 304 R 304 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 34
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.71 E-value=4.2e-17 Score=142.21 Aligned_cols=186 Identities=13% Similarity=0.197 Sum_probs=124.9
Q ss_pred hhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHH
Q 047225 5 RARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEA 84 (287)
Q Consensus 5 ~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (287)
.++..+..+++..++++|+||||||||++++++++.+...+.+++++++.++.... ...+.. .....+...
T Consensus 25 ~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~--------~~~~~~~~~ 95 (324)
T 1l8q_A 25 VVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM-VEHLKK--------GTINEFRNM 95 (324)
T ss_dssp HHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-HHHHHH--------TCHHHHHHH
T ss_pred HHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH-HHHHHc--------CcHHHHHHH
Confidence 34444445543334699999999999999999999886556788899887654321 000000 001233334
Q ss_pred HHhCCcEEEEEcCcccccH--HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 85 VRHRPHSVILFDEIEKAHR--DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 85 ~~~~~~~il~iDeid~~~~--~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
+.. ..+|||||++.+.. ..+..++.+++... ..+..+|++++..+..+
T Consensus 96 ~~~--~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~----------~~~~~iii~~~~~~~~l------------------ 145 (324)
T 1l8q_A 96 YKS--VDLLLLDDVQFLSGKERTQIEFFHIFNTLY----------LLEKQIILASDRHPQKL------------------ 145 (324)
T ss_dssp HHT--CSEEEEECGGGGTTCHHHHHHHHHHHHHHH----------HTTCEEEEEESSCGGGC------------------
T ss_pred hcC--CCEEEEcCcccccCChHHHHHHHHHHHHHH----------HCCCeEEEEecCChHHH------------------
Confidence 433 35999999999875 66777777765311 01224566665443321
Q ss_pred HHhcCChhHHhccC--ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 163 LRRRFRPEFLNRID--EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 163 ~~~~~~~~l~~r~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
..+.++|.+||. ..+.++| +.++..+++...+... .+.++++++++++... .++|.+..+++
T Consensus 146 --~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~---------~~~l~~~~l~~l~~~~----g~~r~l~~~l~ 209 (324)
T 1l8q_A 146 --DGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEF---------NLELRKEVIDYLLENT----KNVREIEGKIK 209 (324)
T ss_dssp --TTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHT---------TCCCCHHHHHHHHHHC----SSHHHHHHHHH
T ss_pred --HHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHhC----CCHHHHHHHHH
Confidence 135789999996 5699999 9999999997776431 3578999999999875 46789888888
Q ss_pred HHHHH
Q 047225 241 RLLED 245 (287)
Q Consensus 241 ~~~~~ 245 (287)
+++..
T Consensus 210 ~~~~~ 214 (324)
T 1l8q_A 210 LIKLK 214 (324)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 77654
No 35
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.70 E-value=2.4e-16 Score=137.37 Aligned_cols=162 Identities=21% Similarity=0.305 Sum_probs=119.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh----CCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH----RPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~il~ 94 (287)
.+++.||||||||++++++++.+ +.+++.++++.... ..+. ..+.+.... +.+.+++
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~~-~~i~---------------~~~~~~~~~~~~~~~~~vli 110 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCKI-DFVR---------------GPLTNFASAASFDGRQKVIV 110 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCCH-HHHH---------------THHHHHHHBCCCSSCEEEEE
T ss_pred EEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccCH-HHHH---------------HHHHHHHhhcccCCCCeEEE
Confidence 58888999999999999999998 67788888765331 1111 112222222 2468999
Q ss_pred EcCccccc-HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHh
Q 047225 95 FDEIEKAH-RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLN 173 (287)
Q Consensus 95 iDeid~~~-~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 173 (287)
|||+|.+. .+.++.|+++++... .++.+|+++|... .+.+++.+
T Consensus 111 iDEi~~l~~~~~~~~L~~~le~~~-----------~~~~iI~~~n~~~------------------------~l~~~l~s 155 (324)
T 3u61_B 111 IDEFDRSGLAESQRHLRSFMEAYS-----------SNCSIIITANNID------------------------GIIKPLQS 155 (324)
T ss_dssp EESCCCGGGHHHHHHHHHHHHHHG-----------GGCEEEEEESSGG------------------------GSCTTHHH
T ss_pred EECCcccCcHHHHHHHHHHHHhCC-----------CCcEEEEEeCCcc------------------------ccCHHHHh
Confidence 99999999 999999999998631 3567899998753 35689999
Q ss_pred ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeCh-hHHHHHHHhccCCCCCchhHHHHHH
Q 047225 174 RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTH-TFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 174 r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~-~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
|| ..+.|++|+.+++.+++...+......+...+ +.+++ ++++.++..+. .++|.+...++
T Consensus 156 R~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~---gd~R~a~~~L~ 217 (324)
T 3u61_B 156 RC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG--IAIADMKVVAALVKKNF---PDFRKTIGELD 217 (324)
T ss_dssp HS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT--CCBSCHHHHHHHHHHTC---SCTTHHHHHHH
T ss_pred hC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCCCcHHHHHHHHHhCC---CCHHHHHHHHH
Confidence 99 78999999999999988888777666555443 57888 99999998732 34455444444
No 36
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=134.02 Aligned_cols=174 Identities=24% Similarity=0.354 Sum_probs=109.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++++++++.+ +.+++.++++++..... + .+......++..+.....++|||||+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~~~~a~~~~~~vl~iDei 107 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEVIG---------G-LGAARVRSLFKEARARAPCIVYIDEI 107 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSSST---------T-HHHHHHHHHHHHHHHTCSEEEEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhhcc---------C-hhHHHHHHHHHHHHhcCCeEEEEeCc
Confidence 69999999999999999999998 67888888876543210 0 00011123444455555689999999
Q ss_pred cccc------------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 99 EKAH------------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 99 d~~~------------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
|.+. ...+..+..+++.-... + ...++++|+++|... .
T Consensus 108 d~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---~---~~~~~~vi~~tn~~~------------------------~ 157 (262)
T 2qz4_A 108 DAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM---G---TTDHVIVLASTNRAD------------------------I 157 (262)
T ss_dssp -------------------CHHHHHHHHHHHTC---C---TTCCEEEEEEESCGG------------------------G
T ss_pred chhhccccccccCccchhHHHHHHHHHHHhhCc---C---CCCCEEEEecCCChh------------------------h
Confidence 9882 33334444444321000 0 113568888898753 2
Q ss_pred CChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhH-HHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 167 FRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTF-KKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 167 ~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
+++++++ ||+..+.+++|+.++..++++.++... .+..+.+. ...++... .+++.++++..++++.
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~~~~l~~~~--~g~~~~~l~~l~~~a~ 226 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL---------KLTQSSTFYSQRLAELT--PGFSGADIANICNEAA 226 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT---------TCCBTHHHHHHHHHHTC--TTCCHHHHHHHHHHHH
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC---------CCCcchhhHHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 3567877 999999999999999999998877542 22344443 35565543 3456678888887665
Q ss_pred HHH
Q 047225 244 EDN 246 (287)
Q Consensus 244 ~~~ 246 (287)
..+
T Consensus 227 ~~a 229 (262)
T 2qz4_A 227 LHA 229 (262)
T ss_dssp TC-
T ss_pred HHH
Confidence 544
No 37
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.70 E-value=2.9e-16 Score=134.28 Aligned_cols=173 Identities=25% Similarity=0.323 Sum_probs=116.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++++++++.+ +.+++.+++++...... +.. ......++..+.....++|||||+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~vl~iDEi 119 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKKFI---------GEG-ASLVKDIFKLAKEKAPSIIFIDEI 119 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCCST---------THH-HHHHHHHHHHHHHTCSEEEEEETT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHhcc---------chH-HHHHHHHHHHHHHcCCeEEEEECH
Confidence 69999999999999999999998 67888888866543210 000 001123455555566689999999
Q ss_pred ccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+ +...+..+..+++...... ...++++|+|+|... .+
T Consensus 120 d~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~------~~~~~~vI~ttn~~~------------------------~l 169 (285)
T 3h4m_A 120 DAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD------ARGDVKIIGATNRPD------------------------IL 169 (285)
T ss_dssp HHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC------SSSSEEEEEECSCGG------------------------GB
T ss_pred HHhcccCccccCCccHHHHHHHHHHHHHhhCCC------CCCCEEEEEeCCCch------------------------hc
Confidence 987 5566777777765421000 013568899998752 35
Q ss_pred ChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 168 RPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 168 ~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
++++++ ||+..+.+++|+.++..+|++..+... + +. .+..+..++... .+++.++++.+++.+...
T Consensus 170 ~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~-------~--~~-~~~~~~~l~~~~--~g~~~~~i~~l~~~a~~~ 237 (285)
T 3h4m_A 170 DPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKM-------N--LA-EDVNLEEIAKMT--EGCVGAELKAICTEAGMN 237 (285)
T ss_dssp CHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTS-------C--BC-TTCCHHHHHHHC--TTCCHHHHHHHHHHHHHH
T ss_pred CHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcC-------C--CC-CcCCHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 678887 998899999999999999997664321 1 11 223356666543 344668888887776654
Q ss_pred H
Q 047225 246 N 246 (287)
Q Consensus 246 ~ 246 (287)
+
T Consensus 238 a 238 (285)
T 3h4m_A 238 A 238 (285)
T ss_dssp H
T ss_pred H
Confidence 4
No 38
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.70 E-value=6.4e-16 Score=132.96 Aligned_cols=175 Identities=19% Similarity=0.239 Sum_probs=120.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++++++++.+ +.+++.+++++..... .+. +......++........++|||||+
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~~---------~~~-~~~~~~~~~~~~~~~~~~vl~iDEi 122 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSKY---------VGD-GEKLVRALFAVARHMQPSIIFIDEV 122 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSSS---------CSC-HHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred eEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhcc---------cch-HHHHHHHHHHHHHHcCCcEEEeccH
Confidence 69999999999999999999998 6778888886644221 010 0011223455555566689999999
Q ss_pred cccc-----------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKAH-----------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~~-----------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+. ...+..|+..++...... ....+++|+++|.+. .+
T Consensus 123 d~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~------~~~~v~vi~~tn~~~------------------------~l 172 (297)
T 3b9p_A 123 DSLLSERSSSEHEASRRLKTEFLVEFDGLPGNP------DGDRIVVLAATNRPQ------------------------EL 172 (297)
T ss_dssp GGTSBCC-----CCSHHHHHHHHHHHHHCC------------CEEEEEEESCGG------------------------GB
T ss_pred HHhccccccCcchHHHHHHHHHHHHHhcccccC------CCCcEEEEeecCChh------------------------hC
Confidence 9762 345566666666421110 012467888888753 35
Q ss_pred ChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHH
Q 047225 168 RPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNL 247 (287)
Q Consensus 168 ~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~ 247 (287)
.+++++||+..+.+++|+.++...++...+... ...++++.++.++..+ .+++.++++..++.+...++
T Consensus 173 ~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~---------~~~~~~~~~~~la~~~--~g~~~~~l~~l~~~a~~~a~ 241 (297)
T 3b9p_A 173 DEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQ---------GSPLDTEALRRLAKIT--DGYSGSDLTALAKDAALEPI 241 (297)
T ss_dssp CHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGG---------SCCSCHHHHHHHHHHT--TTCCHHHHHHHHHHHTTHHH
T ss_pred CHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHHH
Confidence 688999999899999999999999887665431 2357888999998864 35566788888877666544
No 39
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.70 E-value=2.6e-16 Score=137.59 Aligned_cols=172 Identities=20% Similarity=0.252 Sum_probs=116.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCC-----CCCCcccchhhHHHHHHhCCcEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSP-----PGYVGFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~il 93 (287)
+++|+||||||||++++++++.+ +.++..+++...... .+++|.. .+...+. .+.+ ..+++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~~~~---~~l~g~~~~~~~~~~~~~~-~g~l-------~~~vl 113 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPDLLP---SDLIGTMIYNQHKGNFEVK-KGPV-------FSNFI 113 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTTCCH---HHHHEEEEEETTTTEEEEE-ECTT-------CSSEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCCCCh---hhcCCceeecCCCCceEec-cCcc-------cccEE
Confidence 69999999999999999999998 556777777432211 1112110 0000000 0111 12599
Q ss_pred EEcCcccccHHHHHHHHHhhcCceeecCCCceeecc-ceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHH
Q 047225 94 LFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLK-NTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFL 172 (287)
Q Consensus 94 ~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~-~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (287)
||||+|++++..++.|++.++++.+.. .|.....+ ++++|+|+|+..... ...++++|+
T Consensus 114 ~iDEi~~~~~~~~~~Ll~~l~~~~~~~-~g~~~~~~~~~~viat~np~~~~~-------------------~~~l~~~l~ 173 (331)
T 2r44_A 114 LADEVNRSPAKVQSALLECMQEKQVTI-GDTTYPLDNPFLVLATQNPVEQEG-------------------TYPLPEAQV 173 (331)
T ss_dssp EEETGGGSCHHHHHHHHHHHHHSEEEE-TTEEEECCSSCEEEEEECTTCCSC-------------------CCCCCHHHH
T ss_pred EEEccccCCHHHHHHHHHHHhcCceee-CCEEEECCCCEEEEEecCCCcccC-------------------cccCCHHHH
Confidence 999999999999999999999988776 45555554 578888888653110 013689999
Q ss_pred hccCceEEeCCCCHHHHHHHHHHHHHHH-------------HHHHHhcCcEEEeChhHHHHHHHh
Q 047225 173 NRIDEVIVFRQLNKMQLMEIVDIMLKEI-------------YERLEAKNMELTVTHTFKKKLIEE 224 (287)
Q Consensus 173 ~r~~~~i~~~~~~~~~~~~il~~~l~~~-------------~~~~~~~~~~~~i~~~~~~~l~~~ 224 (287)
+||+..+.+++|+.++..+|++..+... ...+......+.++++++++++..
T Consensus 174 ~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~ 238 (331)
T 2r44_A 174 DRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIEL 238 (331)
T ss_dssp TTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHH
T ss_pred hheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 9997789999999999999997765321 000111001467899999999764
No 40
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.69 E-value=1.6e-17 Score=127.97 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=88.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++|+++++.....+.+++ ++|+...+.. .....+.....+++||||+
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~-------------------~~~~~~~~a~~g~l~ldei 85 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAP-------------------QLNDFIALAQGGTLVLSHP 85 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSS-------------------CHHHHHHHHTTSCEEEECG
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcch-------------------hhhcHHHHcCCcEEEEcCh
Confidence 6999999999999999999998766677888 9997655431 1222222224469999999
Q ss_pred ccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCce
Q 047225 99 EKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDEV 178 (287)
Q Consensus 99 d~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~ 178 (287)
|.++++.+..|+++++... .++.+|++||.+..... -...|.++|..|+...
T Consensus 86 ~~l~~~~q~~Ll~~l~~~~-----------~~~~~I~~t~~~~~~~~-----------------~~~~~~~~L~~rl~~~ 137 (145)
T 3n70_A 86 EHLTREQQYHLVQLQSQEH-----------RPFRLIGIGDTSLVELA-----------------ASNHIIAELYYCFAMT 137 (145)
T ss_dssp GGSCHHHHHHHHHHHHSSS-----------CSSCEEEEESSCHHHHH-----------------HHSCCCHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHhhcC-----------CCEEEEEECCcCHHHHH-----------------HcCCCCHHHHHHhcCC
Confidence 9999999999999995421 24579999998644221 1346889999998644
Q ss_pred -EEeCCCC
Q 047225 179 -IVFRQLN 185 (287)
Q Consensus 179 -i~~~~~~ 185 (287)
|.+||+.
T Consensus 138 ~i~lPpLR 145 (145)
T 3n70_A 138 QIACLPLT 145 (145)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 8999874
No 41
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.68 E-value=4.4e-16 Score=142.44 Aligned_cols=201 Identities=16% Similarity=0.222 Sum_probs=125.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhC--CcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHR--PHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~il~iD 96 (287)
+++|+||||||||++|+++++.+.. ..++...++.- . +...++|...+.... ..+.+..+.... ..+|+|||
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~~-~~~f~~~~~~~-~---t~~dL~G~~~~~~~~-~~g~~~~~~~g~l~~~~IL~ID 116 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQN-ARAFEYLMTRF-S---TPEEVFGPLSIQALK-DEGRYERLTSGYLPEAEIVFLD 116 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBSS-CCEEEEECCTT-C---CHHHHHCCBC-----------CBCCTTSGGGCSEEEEE
T ss_pred eeEeecCchHHHHHHHHHHHHHHhh-hhHHHHHHHhc-C---CHHHhcCcccHHHHh-hchhHHhhhccCCCcceeeeHH
Confidence 7999999999999999999998832 34555555542 1 123455532111100 000110000000 13599999
Q ss_pred CcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC
Q 047225 97 EIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID 176 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 176 (287)
|++++++..++.|+++++++.+.. .|.....+..++|++||+.+.. ..+.+++++||.
T Consensus 117 EI~r~~~~~q~~LL~~lee~~v~i-~G~~~~~~~~~iI~ATN~lpe~---------------------~~~~~aLldRF~ 174 (500)
T 3nbx_X 117 EIWKAGPAILNTLLTAINERQFRN-GAHVEKIPMRLLVAASNELPEA---------------------DSSLEALYDRML 174 (500)
T ss_dssp SGGGCCHHHHHHHHHHHHSSEEEC-SSSEEECCCCEEEEEESSCCCT---------------------TCTTHHHHTTCC
T ss_pred hHhhhcHHHHHHHHHHHHHHhccC-CCCcCCcchhhhhhccccCCCc---------------------cccHHHHHHHHH
Confidence 999999999999999999998876 5666666665678888864331 134579999998
Q ss_pred ceEEeCCCCH-HHHHHHHHHHH------------------HHHHHHHHhcCcEEEeChhHHHHHHHhcc-------CCCC
Q 047225 177 EVIVFRQLNK-MQLMEIVDIML------------------KEIYERLEAKNMELTVTHTFKKKLIEEGY-------NPSY 230 (287)
Q Consensus 177 ~~i~~~~~~~-~~~~~il~~~l------------------~~~~~~~~~~~~~~~i~~~~~~~l~~~~~-------~~~~ 230 (287)
..+.+++|+. ++...|+.... ......+. .+.++++++++++.... ..+.
T Consensus 175 ~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~----~v~v~d~v~e~i~~l~~~lr~~r~~~~i 250 (500)
T 3nbx_X 175 IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIG----EITLPDHVFELIFMLRQQLDKLPDAPYV 250 (500)
T ss_dssp EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHT----TCBCCHHHHHHHHHHHHHHHHCSSSCCC
T ss_pred HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCC----cccCchHHHHHHHHHHHHhhcCCCCCcc
Confidence 8899999996 66777775432 12222221 46799999999986531 2344
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcc
Q 047225 231 GARPLRRAIGRLLEDNLAEIILTGY 255 (287)
Q Consensus 231 ~~r~l~~~i~~~~~~~~~~~~~~~~ 255 (287)
+.|.+..++ ..+.+.+.+.+.
T Consensus 251 S~R~~~~ll----r~A~A~A~l~gr 271 (500)
T 3nbx_X 251 SDRRWKKAI----RLLQASAFFSGR 271 (500)
T ss_dssp CHHHHHHHH----HHHHHHHHHTTC
T ss_pred chhHHHHHH----HHHHHHHhhcCC
Confidence 555554444 334445555543
No 42
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.67 E-value=2e-15 Score=123.52 Aligned_cols=162 Identities=22% Similarity=0.296 Sum_probs=112.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC--CCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHH-----hCCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS--KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVR-----HRPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 91 (287)
+++|+||+|||||++++.+++.+... ...++.++++......... ..+..... .....
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 104 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR---------------HKIKEFARTAPIGGAPFK 104 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH---------------HHHHHHHTSCCSTTCSCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH---------------HHHHHHhcccCCCccCce
Confidence 49999999999999999999986322 2345566654432211111 11112221 24568
Q ss_pred EEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhH
Q 047225 92 VILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEF 171 (287)
Q Consensus 92 il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (287)
+|+|||++.++...++.|+++++.. ..+..+|+++|... .+.+++
T Consensus 105 vliiDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~~~~~~------------------------~~~~~l 149 (226)
T 2chg_A 105 IIFLDEADALTADAQAALRRTMEMY-----------SKSCRFILSCNYVS------------------------RIIEPI 149 (226)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEESCGG------------------------GSCHHH
T ss_pred EEEEeChhhcCHHHHHHHHHHHHhc-----------CCCCeEEEEeCChh------------------------hcCHHH
Confidence 9999999999999999999998852 13457888887642 346789
Q ss_pred HhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 172 LNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 172 ~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
.+|+ ..+.++|++.+++.+++...+... ...+++++++.++..+ ..++|.+.+.++++.
T Consensus 150 ~~r~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~~---~g~~r~l~~~l~~~~ 208 (226)
T 2chg_A 150 QSRC-AVFRFKPVPKEAMKKRLLEICEKE---------GVKITEDGLEALIYIS---GGDFRKAINALQGAA 208 (226)
T ss_dssp HTTS-EEEECCCCCHHHHHHHHHHHHHHH---------TCCBCHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHhC-ceeecCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 9999 599999999999999987765432 2458899999998753 235566666666443
No 43
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.67 E-value=4.3e-16 Score=129.44 Aligned_cols=167 Identities=13% Similarity=0.166 Sum_probs=116.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++++.+++.+...+..+.++++.+..... . .....+. ...+++|||+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~--~----------------~~~~~~~--~~~vliiDe~ 113 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIS--T----------------ALLEGLE--QFDLICIDDV 113 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSC--G----------------GGGTTGG--GSSEEEEETG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--H----------------HHHHhcc--CCCEEEEecc
Confidence 699999999999999999999986656778888887654321 0 1111112 2359999999
Q ss_pred ccccHHH--HHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccC
Q 047225 99 EKAHRDV--LNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRID 176 (287)
Q Consensus 99 d~~~~~~--~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~ 176 (287)
+.++... +..|+.+++.... .....+|++++....... .+.+++.+|+.
T Consensus 114 ~~~~~~~~~~~~l~~~l~~~~~---------~~~~~ii~~~~~~~~~~~--------------------~~~~~l~~r~~ 164 (242)
T 3bos_A 114 DAVAGHPLWEEAIFDLYNRVAE---------QKRGSLIVSASASPMEAG--------------------FVLPDLVSRMH 164 (242)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHH---------HCSCEEEEEESSCTTTTT--------------------CCCHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHHH---------cCCCeEEEEcCCCHHHHH--------------------HhhhhhhhHhh
Confidence 9986644 7777777664210 012236777765443220 22378889985
Q ss_pred --ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHH
Q 047225 177 --EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDN 246 (287)
Q Consensus 177 --~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~ 246 (287)
..+.++||+.+++.+++...+... .+.++++++++++... ..++|.+.+.+++++..+
T Consensus 165 ~~~~i~l~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~~---~g~~r~l~~~l~~~~~~a 224 (242)
T 3bos_A 165 WGLTYQLQPMMDDEKLAALQRRAAMR---------GLQLPEDVGRFLLNRM---ARDLRTLFDVLDRLDKAS 224 (242)
T ss_dssp HSEEEECCCCCGGGHHHHHHHHHHHT---------TCCCCHHHHHHHHHHT---TTCHHHHHHHHHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc---cCCHHHHHHHHHHHHHHH
Confidence 789999999999999997776431 2468999999999863 346788888888776644
No 44
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.66 E-value=2.8e-16 Score=142.39 Aligned_cols=188 Identities=16% Similarity=0.226 Sum_probs=124.9
Q ss_pred hhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCC--CCceEEecccccccccchhhhhCCCCCCCcccchhhHHH
Q 047225 6 ARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGS--KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTE 83 (287)
Q Consensus 6 ~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (287)
++..+..|+. .++++|+||||||||++++++++.+... +.+++++++..+... ....+.. .....+..
T Consensus 120 ~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~--~~~~~~~-------~~~~~~~~ 189 (440)
T 2z4s_A 120 ALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND--LVDSMKE-------GKLNEFRE 189 (440)
T ss_dssp HHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHH--HHHHHHT-------TCHHHHHH
T ss_pred HHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH--HHHHHHc-------ccHHHHHH
Confidence 3444444544 3479999999999999999999988332 567788888765321 1111100 00112333
Q ss_pred HHHhCCcEEEEEcCcccccH--HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHH
Q 047225 84 AVRHRPHSVILFDEIEKAHR--DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAE 161 (287)
Q Consensus 84 ~~~~~~~~il~iDeid~~~~--~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~ 161 (287)
.+. ....+|||||++.+.. ..+..|+.+++... . .+..+|++++..+..+
T Consensus 190 ~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~---~-------~~~~iIitt~~~~~~l----------------- 241 (440)
T 2z4s_A 190 KYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELH---D-------SGKQIVICSDREPQKL----------------- 241 (440)
T ss_dssp HHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHH---T-------TTCEEEEEESSCGGGC-----------------
T ss_pred Hhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHH---H-------CCCeEEEEECCCHHHH-----------------
Confidence 333 1346999999998875 67777777765311 0 1234666666544322
Q ss_pred HHHhcCChhHHhccC--ceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHH
Q 047225 162 ELRRRFRPEFLNRID--EVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 162 ~~~~~~~~~l~~r~~--~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
..+.+++.+||. ..+.++||+.+++.+++...+... .+.++++++++|+... ..++|.+..++
T Consensus 242 ---~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~---------~~~i~~e~l~~la~~~---~gn~R~l~~~L 306 (440)
T 2z4s_A 242 ---SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE---------HGELPEEVLNFVAENV---DDNLRRLRGAI 306 (440)
T ss_dssp ---SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH---------TCCCCTTHHHHHHHHC---CSCHHHHHHHH
T ss_pred ---HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHhc---CCCHHHHHHHH
Confidence 125688999995 679999999999999997776531 3568999999999764 35779999998
Q ss_pred HHHHHHH
Q 047225 240 GRLLEDN 246 (287)
Q Consensus 240 ~~~~~~~ 246 (287)
++++..+
T Consensus 307 ~~~~~~a 313 (440)
T 2z4s_A 307 IKLLVYK 313 (440)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877654
No 45
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.66 E-value=6.2e-16 Score=141.49 Aligned_cols=172 Identities=22% Similarity=0.291 Sum_probs=120.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++|+++++.+ +.+++.++|++..... +|. . ......++........++|||||+
T Consensus 240 ~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~~~~-----~g~----~-~~~~~~~f~~A~~~~p~iLfLDEI 306 (489)
T 3hu3_A 240 GILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL-----AGE----S-ESNLRKAFEEAEKNAPAIIFIDEL 306 (489)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHHTSC-----TTH----H-HHHHHHHHHHHHHTCSEEEEEESH
T ss_pred cEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhhhhh-----cch----h-HHHHHHHHHHHHhcCCcEEEecch
Confidence 69999999999999999999998 7889999997765321 110 0 000123444555555689999999
Q ss_pred ccc-----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKA-----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~-----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+ +..++..|+++++... ...++++|++||.+. .+
T Consensus 307 d~l~~~~~~~~~~~~~~~~~~LL~~ld~~~---------~~~~v~vIaaTn~~~------------------------~L 353 (489)
T 3hu3_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLK---------QRAHVIVMAATNRPN------------------------SI 353 (489)
T ss_dssp HHHCBCTTSCCCHHHHHHHHHHHHHHHHSC---------TTSCEEEEEEESCGG------------------------GB
T ss_pred hhhccccccccchHHHHHHHHHHHHhhccc---------cCCceEEEEecCCcc------------------------cc
Confidence 754 3468888999988421 113678999999753 34
Q ss_pred ChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 168 RPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 168 ~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
++++.+ ||+..+.+++|+.++..+|++..+... .+. .+..+..++.. ..+++.+++...+.++...
T Consensus 354 d~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~---------~l~-~~~~l~~la~~--t~g~s~~dL~~L~~~A~~~ 421 (489)
T 3hu3_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---------KLA-DDVDLEQVANE--THGHVGADLAALCSEAALQ 421 (489)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTS---------CBC-TTCCHHHHHHT--CTTCCHHHHHHHHHHHHHH
T ss_pred CHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcC---------CCc-chhhHHHHHHH--ccCCcHHHHHHHHHHHHHH
Confidence 678887 898899999999999999996654321 111 22345666664 3456678888888877776
Q ss_pred HHH
Q 047225 246 NLA 248 (287)
Q Consensus 246 ~~~ 248 (287)
++.
T Consensus 422 a~r 424 (489)
T 3hu3_A 422 AIR 424 (489)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 46
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.66 E-value=8.9e-16 Score=146.82 Aligned_cols=175 Identities=22% Similarity=0.290 Sum_probs=124.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||++|+++|+.+ +.+++.+++++..... .+. +......+++.+.....+||||||+
T Consensus 240 GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~~l~sk~---------~ge-se~~lr~lF~~A~~~~PsIIfIDEi 306 (806)
T 3cf2_A 240 GILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL---------AGE-SESNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp EEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHHHHHSSC---------TTH-HHHHHHHHHHHHTTSCSEEEEEESG
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhHHhhccc---------chH-HHHHHHHHHHHHHHcCCeEEEEehh
Confidence 69999999999999999999998 7889999987655321 000 0001234566666666799999999
Q ss_pred cccc-----------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKAH-----------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~~-----------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+- ..+.+.|+..|+.-. ...++++|++||... .+
T Consensus 307 Dal~~~r~~~~~~~~~riv~~LL~~mdg~~---------~~~~V~VIaaTN~~d------------------------~L 353 (806)
T 3cf2_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLK---------QRAHVIVMAATNRPN------------------------SI 353 (806)
T ss_dssp GGTCCTTTTCCCTTHHHHHHHHHTHHHHCC---------GGGCEEEEEECSSTT------------------------TS
T ss_pred cccccccCCCCChHHHHHHHHHHHHHhccc---------ccCCEEEEEecCChh------------------------hc
Confidence 9652 346667777776411 013567889999763 35
Q ss_pred ChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 168 RPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 168 ~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
+++|++ ||+..|.++.|+..+..+|++.++.. ..+. ++--+..++..+ .+++..++...++++...
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~---------~~~~-~dvdl~~lA~~T--~GfsgaDL~~Lv~eA~~~ 421 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKN---------MKLA-DDVDLEQVANET--HGHVGADLAALCSEAALQ 421 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS---------SEEC-TTCCHHHHHHHC--CSCCHHHHHHHHHHHHHH
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC---------CCCC-cccCHHHHHHhc--CCCCHHHHHHHHHHHHHH
Confidence 788887 99999999999999999999655432 1221 333467777653 456778999999999888
Q ss_pred HHHHHH
Q 047225 246 NLAEII 251 (287)
Q Consensus 246 ~~~~~~ 251 (287)
++.+..
T Consensus 422 A~~r~~ 427 (806)
T 3cf2_A 422 AIRKKM 427 (806)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 876654
No 47
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.66 E-value=3e-15 Score=126.14 Aligned_cols=170 Identities=24% Similarity=0.359 Sum_probs=112.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||+++++++..+ +.+++.++++++.... .+. +......+++.......+++||||+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~~-----~~~-----~~~~~~~~~~~a~~~~~~il~iDei 113 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEMF-----VGV-----GASRVRDMFEQAKKAAPCIIFIDEI 113 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTSC-----CCC-----CHHHHHHHHHHHHTTCSEEEEETTH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHHh-----hhh-----hHHHHHHHHHHHHHcCCeeehhhhh
Confidence 59999999999999999999998 5678888887654321 110 0011123444555555689999999
Q ss_pred ccccH--------------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 99 EKAHR--------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 99 d~~~~--------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|.+.. ..+..++..++.-. ...+.++|+++|...
T Consensus 114 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~vI~~tn~~~----------------------- 161 (257)
T 1lv7_A 114 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE---------GNEGIIVIAATNRPD----------------------- 161 (257)
T ss_dssp HHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC---------SSSCEEEEEEESCTT-----------------------
T ss_pred hhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc---------cCCCEEEEEeeCCch-----------------------
Confidence 86532 34455555555311 113568889998753
Q ss_pred hcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhH-HHHHHHhccCCCCCchhHHHHHHH
Q 047225 165 RRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTF-KKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 165 ~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
.+.+++++ ||+..+.+++|+.++..+|++.++.+. .+.+++ ...++.. .++++.|++..++++
T Consensus 162 -~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-----------~l~~~~~~~~la~~--~~G~~~~dl~~l~~~ 227 (257)
T 1lv7_A 162 -VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-----------PLAPDIDAAIIARG--TPGFSGADLANLVNE 227 (257)
T ss_dssp -TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-----------CBCTTCCHHHHHHT--CTTCCHHHHHHHHHH
T ss_pred -hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC-----------CCCccccHHHHHHH--cCCCCHHHHHHHHHH
Confidence 34567776 998899999999999999886665321 233333 4444442 345688999999998
Q ss_pred HHHHHH
Q 047225 242 LLEDNL 247 (287)
Q Consensus 242 ~~~~~~ 247 (287)
+...+.
T Consensus 228 a~~~a~ 233 (257)
T 1lv7_A 228 AALFAA 233 (257)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 48
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.65 E-value=9.7e-16 Score=131.72 Aligned_cols=145 Identities=12% Similarity=0.135 Sum_probs=92.0
Q ss_pred CCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccc--hhhHHHHH----
Q 047225 12 DPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFEN--GGQLTEAV---- 85 (287)
Q Consensus 12 ~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~---- 85 (287)
....|. .++|+||||||||++|+++|+.+ +.+++.++++++.... .|... ...++...
T Consensus 32 ~~~~p~-~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~~------------~g~~~~~i~~~f~~a~~~~ 95 (293)
T 3t15_A 32 NIKVPL-ILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESGN------------AGEPAKLIRQRYREAAEII 95 (293)
T ss_dssp TCCCCS-EEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC---------------HHHHHHHHHHHHHHHHH
T ss_pred CCCCCe-EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhcc------------CchhHHHHHHHHHHHHHHH
Confidence 344555 59999999999999999999999 7889999987765331 11110 01222222
Q ss_pred HhCCcEEEEEcCcccccH-------------HHHHHHHHhhcCceeecCCC--ceeeccceEEEEeecCCchhhhhhccC
Q 047225 86 RHRPHSVILFDEIEKAHR-------------DVLNVMLQLLDDGRVTDGKG--QTVDLKNTIIIMTSNIGDSVIARESIL 150 (287)
Q Consensus 86 ~~~~~~il~iDeid~~~~-------------~~~~~L~~~l~~~~~~~~~g--~~i~~~~~~iI~t~n~~~~~~~~~~~~ 150 (287)
+...++||||||+|++.+ .++..|+++++......-.+ ......+++||+|||...
T Consensus 96 ~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~--------- 166 (293)
T 3t15_A 96 RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS--------- 166 (293)
T ss_dssp TTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC---------
T ss_pred hcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc---------
Confidence 344668999999997654 35688999988543221111 222345788999999753
Q ss_pred CchHHHHHHHHHHHhcCChhHH--hccCceEEeCCCCHHHHHHHHHHHHH
Q 047225 151 GSDQMERGVAEELRRRFRPEFL--NRIDEVIVFRQLNKMQLMEIVDIMLK 198 (287)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~l~--~r~~~~i~~~~~~~~~~~~il~~~l~ 198 (287)
.++++|+ .||+..+.+ |+.++..+|++.++.
T Consensus 167 ---------------~ld~al~R~~R~d~~i~~--P~~~~r~~Il~~~~~ 199 (293)
T 3t15_A 167 ---------------TLYAPLIRDGRMEKFYWA--PTREDRIGVCTGIFR 199 (293)
T ss_dssp ---------------C--CHHHHHHHEEEEEEC--CCHHHHHHHHHHHHG
T ss_pred ---------------cCCHHHhCCCCCceeEeC--cCHHHHHHHHHHhcc
Confidence 3457777 488766764 499999999975553
No 49
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.64 E-value=1.5e-15 Score=134.99 Aligned_cols=192 Identities=15% Similarity=0.110 Sum_probs=126.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC------CCceEEecccccccccc----hhhhhCCCCCCCcccc---hhhHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS------KEAMVRIDMSEYMEKHT----VSKFFGSPPGYVGFEN---GGQLTEAV 85 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~~ 85 (287)
+++|+||||||||++++.+++.+... +..+++++|....+... +...++......+... ...+...+
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l 125 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRL 125 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999987332 56788888876544321 2222333222222221 12333344
Q ss_pred HhC-CcEEEEEcCcccccHH--HHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 86 RHR-PHSVILFDEIEKAHRD--VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 86 ~~~-~~~il~iDeid~~~~~--~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
... ...+|+|||++.+... .++.|..+++...... . ..++.+|+++|..+..
T Consensus 126 ~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~-----~-~~~~~~I~~t~~~~~~------------------- 180 (387)
T 2v1u_A 126 SRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG-----D-RVWVSLVGITNSLGFV------------------- 180 (387)
T ss_dssp TTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----------CEEEEECSCSTTS-------------------
T ss_pred hccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC-----C-CceEEEEEEECCCchH-------------------
Confidence 333 3569999999999776 6777777665321000 0 1355788888765311
Q ss_pred HHhcCChhHHhccCc-eEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHH
Q 047225 163 LRRRFRPEFLNRIDE-VIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 163 ~~~~~~~~l~~r~~~-~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
..+.+.+.+|+.. .+.|+|++.+++.+++...+... + ....+++++++.++..++....++|.+.+++..
T Consensus 181 --~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~ 251 (387)
T 2v1u_A 181 --ENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA---F----NPGVLDPDVVPLCAALAAREHGDARRALDLLRV 251 (387)
T ss_dssp --SSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH---B----CTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred --hhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh---c----cCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 1457889999976 79999999999999998776431 1 123578999999998877655677777777776
Q ss_pred HHH
Q 047225 242 LLE 244 (287)
Q Consensus 242 ~~~ 244 (287)
+..
T Consensus 252 a~~ 254 (387)
T 2v1u_A 252 AGE 254 (387)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 50
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=7.4e-16 Score=135.53 Aligned_cols=190 Identities=15% Similarity=0.210 Sum_probs=119.7
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcC---CCCceEEecccccccccchhhhhCCCCCCCcccchh
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFG---SKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGG 79 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (287)
++.++..+.....+ +++|+||||||||++++++++.+.. ....+..+++++......+...+.............
T Consensus 46 ~~~l~~~l~~~~~~--~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (353)
T 1sxj_D 46 VTVLKKTLKSANLP--HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSK 123 (353)
T ss_dssp HHHHHHHTTCTTCC--CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCT
T ss_pred HHHHHHHHhcCCCC--EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccch
Confidence 44555555554322 4999999999999999999998732 234566677655322111111100000000000000
Q ss_pred hHHHHHHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHH
Q 047225 80 QLTEAVRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGV 159 (287)
Q Consensus 80 ~~~~~~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~ 159 (287)
..........+.+++|||+|.+++..++.|++++++.. .+..+|+++|...
T Consensus 124 ~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-----------~~~~~il~~~~~~------------------ 174 (353)
T 1sxj_D 124 HDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-----------GVTRFCLICNYVT------------------ 174 (353)
T ss_dssp THHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-----------TTEEEEEEESCGG------------------
T ss_pred hhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-----------CCceEEEEeCchh------------------
Confidence 00011112345799999999999999999999998632 2456777777543
Q ss_pred HHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHH
Q 047225 160 AEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 160 ~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
.+.+++.+|+ ..+.|+|++.+++..++...+.. . .+.++++++++++..++ .++|.+...+
T Consensus 175 ------~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~-------~--~~~i~~~~l~~l~~~~~---G~~r~~~~~l 235 (353)
T 1sxj_D 175 ------RIIDPLASQC-SKFRFKALDASNAIDRLRFISEQ-------E--NVKCDDGVLERILDISA---GDLRRGITLL 235 (353)
T ss_dssp ------GSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHT-------T--TCCCCHHHHHHHHHHTS---SCHHHHHHHH
T ss_pred ------hCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHH-------h--CCCCCHHHHHHHHHHcC---CCHHHHHHHH
Confidence 2468899999 68999999999999998766542 1 35789999999999865 3445555555
Q ss_pred HHH
Q 047225 240 GRL 242 (287)
Q Consensus 240 ~~~ 242 (287)
+.+
T Consensus 236 ~~~ 238 (353)
T 1sxj_D 236 QSA 238 (353)
T ss_dssp HHT
T ss_pred HHH
Confidence 433
No 51
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.64 E-value=2.8e-15 Score=129.83 Aligned_cols=175 Identities=22% Similarity=0.298 Sum_probs=119.5
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC--CceEEecccccccccchhhhhCCCCCCCcccchhh
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK--EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQ 80 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
++.++..+.....+ +++|+||+|||||++++.+++.+.... ..++.++++.......+. ..
T Consensus 26 ~~~l~~~l~~~~~~--~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 88 (319)
T 2chq_A 26 IQRLKGYVERKNIP--HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR---------------HK 88 (319)
T ss_dssp HHHHHTTTTTTCCC--CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSS---------------HH
T ss_pred HHHHHHHHhCCCCC--eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHH---------------HH
Confidence 34455555554322 499999999999999999999874332 345666665432111100 11
Q ss_pred HHHHH-----HhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHH
Q 047225 81 LTEAV-----RHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQM 155 (287)
Q Consensus 81 ~~~~~-----~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~ 155 (287)
+.... ..+++.+++|||+|.++...++.|++++++. .+++.+|+++|...
T Consensus 89 ~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~i~~~~~~~-------------- 143 (319)
T 2chq_A 89 IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-----------SKSCRFILSCNYVS-------------- 143 (319)
T ss_dssp HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSS-----------SSSEEEEEEESCGG--------------
T ss_pred HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhc-----------CCCCeEEEEeCChh--------------
Confidence 12222 1234689999999999999999999999862 13567888887642
Q ss_pred HHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhH
Q 047225 156 ERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPL 235 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l 235 (287)
.+.+++.+|+ ..+.|+|++.+++.+++...+.+ . .+.+++++++.++... +.++|.+
T Consensus 144 ----------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~--~~~i~~~~l~~l~~~~---~G~~r~~ 200 (319)
T 2chq_A 144 ----------RIIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEK-------E--GVKITEDGLEALIYIS---GGDFRKA 200 (319)
T ss_dssp ----------GSCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHT-------T--CCCBCHHHHHHHHHTT---TTCHHHH
T ss_pred ----------hcchHHHhhC-eEEEecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHHc---CCCHHHH
Confidence 3568899999 69999999999999988666542 1 4578999999998653 3345555
Q ss_pred HHHHHHH
Q 047225 236 RRAIGRL 242 (287)
Q Consensus 236 ~~~i~~~ 242 (287)
.+.++++
T Consensus 201 ~~~l~~~ 207 (319)
T 2chq_A 201 INALQGA 207 (319)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 52
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.64 E-value=3.9e-16 Score=149.29 Aligned_cols=175 Identities=26% Similarity=0.371 Sum_probs=109.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||.+|+++|..+ +.+++.++.++.... ..| .. -.....++..++....+||||||+
T Consensus 513 gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~~l~s~-----~vG----es-e~~vr~lF~~Ar~~~P~IifiDEi 579 (806)
T 3cf2_A 513 GVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM-----WFG----ES-EANVREIFDKARQAAPCVLFFDEL 579 (806)
T ss_dssp CCEEESSTTSSHHHHHHHHHHTT---TCEEEECCHHHHHTT-----TCS----SC-HHHHHHHHHHHHTTCSEEEECSCG
T ss_pred eEEEecCCCCCchHHHHHHHHHh---CCceEEeccchhhcc-----ccc----hH-HHHHHHHHHHHHHcCCceeechhh
Confidence 59999999999999999999998 778888887665432 111 11 011246777777777799999999
Q ss_pred ccccH--------------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 99 EKAHR--------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 99 d~~~~--------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|.+-. .+.+.|+..|+.-. ...+++||+|||.+.
T Consensus 580 Dsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~---------~~~~V~vi~aTN~p~----------------------- 627 (806)
T 3cf2_A 580 DSIAKARGGNIGDGGGAADRVINQILTEMDGMS---------TKKNVFIIGATNRPD----------------------- 627 (806)
T ss_dssp GGCC--------------CHHHHHHHHHHHSSC---------SSSSEEEECC-CCSS-----------------------
T ss_pred hHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC---------CCCCEEEEEeCCCch-----------------------
Confidence 96521 25667777776411 013567888999863
Q ss_pred hcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 165 RRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 165 ~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
.+++++++ ||+..|+++.|+.++..+|++.++.+. .+. .+--++.|+.. ..+++..++..++..+
T Consensus 628 -~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~---------~~~-~~~dl~~la~~--t~g~SGadi~~l~~~A 694 (806)
T 3cf2_A 628 -IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS---------PVA-KDVDLEFLAKM--TNGFSGADLTEICQRA 694 (806)
T ss_dssp -SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-----------C-CC------------------CHHHHHHHH
T ss_pred -hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC---------CCC-CCCCHHHHHHh--CCCCCHHHHHHHHHHH
Confidence 46789998 999999999999999999997665421 111 11224556654 3456778999999999
Q ss_pred HHHHHHHHH
Q 047225 243 LEDNLAEII 251 (287)
Q Consensus 243 ~~~~~~~~~ 251 (287)
...++.+.+
T Consensus 695 ~~~a~r~~~ 703 (806)
T 3cf2_A 695 CKLAIRESI 703 (806)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988886653
No 53
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.63 E-value=3.7e-17 Score=125.63 Aligned_cols=114 Identities=13% Similarity=0.144 Sum_probs=84.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++|+++++... +++.++|+...... ....+.....+++||||+
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~----~~~~~~~~~~~~~~--------------------~~~~~~~a~~~~l~lDei 84 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT----PWVSPARVEYLIDM--------------------PMELLQKAEGGVLYVGDI 84 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS----CEECCSSTTHHHHC--------------------HHHHHHHTTTSEEEEEEC
T ss_pred cEEEECCCCccHHHHHHHHHHhCC----CeEEechhhCChHh--------------------hhhHHHhCCCCeEEEeCh
Confidence 599999999999999999998763 88888987654321 222333334569999999
Q ss_pred ccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc-
Q 047225 99 EKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE- 177 (287)
Q Consensus 99 d~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~- 177 (287)
+.++++.+..|+++++++. ..++.+|+++|.+.... . .. |.++|.+|+..
T Consensus 85 ~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~~tn~~~~~~-~-----------------~~-~~~~L~~rl~~~ 135 (143)
T 3co5_A 85 AQYSRNIQTGITFIIGKAE----------RCRVRVIASCSYAAGSD-G-----------------IS-CEEKLAGLFSES 135 (143)
T ss_dssp TTCCHHHHHHHHHHHHHHT----------TTTCEEEEEEEECTTTC--------------------C-HHHHHHHHSSSE
T ss_pred HHCCHHHHHHHHHHHHhCC----------CCCEEEEEecCCCHHHH-H-----------------hC-ccHHHHHHhcCc
Confidence 9999999999999998752 13567999999764332 1 12 55788889754
Q ss_pred eEEeCCCC
Q 047225 178 VIVFRQLN 185 (287)
Q Consensus 178 ~i~~~~~~ 185 (287)
.|.+||+.
T Consensus 136 ~i~lPpLr 143 (143)
T 3co5_A 136 VVRIPPLS 143 (143)
T ss_dssp EEEECCCC
T ss_pred EEeCCCCC
Confidence 48999874
No 54
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.63 E-value=3e-15 Score=124.07 Aligned_cols=173 Identities=16% Similarity=0.206 Sum_probs=109.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccch-----hhhhCCCCCCCcccchhhHHHHHHh------
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTV-----SKFFGSPPGYVGFENGGQLTEAVRH------ 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~------ 87 (287)
.++|+||+|+|||++++.+++.+.... ......|......... ..++..... .......+...+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 123 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQGRFVDLIEIDAA--SRTKVEDTRDLLDNVQYAPA 123 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHHHTTCCSSEEEEETT--CGGGHHHHHHHHHSCCCSCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHHhccCCcceEEecCc--ccccHHHHHHHHHHhhhchh
Confidence 699999999999999999999884322 1111111111000000 000000000 00011122222222
Q ss_pred -CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhc
Q 047225 88 -RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRR 166 (287)
Q Consensus 88 -~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (287)
....+|+|||++.+++..++.|++.++.. ..+..+|++++... .
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-----------~~~~~~i~~t~~~~------------------------~ 168 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVKFLLATTDPQ------------------------K 168 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHHSC-----------CTTEEEEEEESCGG------------------------G
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHhcC-----------CCceEEEEEeCChH------------------------h
Confidence 23579999999999999999999999852 13557888887532 3
Q ss_pred CChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 167 FRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 167 ~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
+.+.+.+|+ ..+.++|++.+++.+++...+... .+.+++++++.++..+ ..++|.+...++++
T Consensus 169 ~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~---------~~~~~~~~~~~l~~~~---~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEE---------HIAHEPRALQLLARAA---EGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHT---------TCCBCHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred CCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhc---------CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 457788997 889999999999999997766431 3468899999998875 23567776666644
No 55
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.63 E-value=9.3e-15 Score=132.82 Aligned_cols=169 Identities=24% Similarity=0.360 Sum_probs=113.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||+++++++... +.+++.++++++.... .| .+......++..+.....++|||||+
T Consensus 51 gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~~-----~g-----~~~~~~r~lf~~A~~~~p~ILfIDEi 117 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVELF-----VG-----VGAARVRDLFAQAKAHAPCIVFIDEI 117 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTCC-----TT-----HHHHHHHHHHHHHHHTCSEEEEEETG
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHHH-----hc-----ccHHHHHHHHHHHHhcCCCEEEEech
Confidence 59999999999999999999998 6788888887765321 11 01111234455555556689999999
Q ss_pred ccccH--------------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 99 EKAHR--------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 99 d~~~~--------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|.+.. ..++.|+..++.-. ...+++||+++|.+.
T Consensus 118 d~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~---------~~~~viVIaaTn~~~----------------------- 165 (476)
T 2ce7_A 118 DAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD---------SKEGIIVMAATNRPD----------------------- 165 (476)
T ss_dssp GGTCCC---------CHHHHHHHHHHHHHHHSC---------GGGTEEEEEEESCGG-----------------------
T ss_pred hhhhhhcccccCcCcHHHHHHHHHHHHHHhccC---------CCCCEEEEEecCChh-----------------------
Confidence 97633 24555665555200 013568999999752
Q ss_pred hcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhH-HHHHHHhccCCCCCchhHHHHHHH
Q 047225 165 RRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTF-KKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 165 ~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
.+++++++ ||+..+.+++|+.++..+|++.++.+. .+.+++ ++.++.. .++++.+++..++++
T Consensus 166 -~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~-----------~l~~~v~l~~la~~--t~G~sgadL~~lv~~ 231 (476)
T 2ce7_A 166 -ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK-----------PLAEDVNLEIIAKR--TPGFVGADLENLVNE 231 (476)
T ss_dssp -GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-----------CBCTTCCHHHHHHT--CTTCCHHHHHHHHHH
T ss_pred -hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC-----------CCcchhhHHHHHHh--cCCCcHHHHHHHHHH
Confidence 34567775 999999999999999999986655321 123333 5556553 344556889988887
Q ss_pred HHHHH
Q 047225 242 LLEDN 246 (287)
Q Consensus 242 ~~~~~ 246 (287)
+...+
T Consensus 232 Aal~A 236 (476)
T 2ce7_A 232 AALLA 236 (476)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76544
No 56
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=2.3e-14 Score=127.43 Aligned_cols=191 Identities=17% Similarity=0.146 Sum_probs=128.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC-CCceEEecccccccccc----hhhhhCCCCCCCcccch---hhHHHHHHh-CC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS-KEAMVRIDMSEYMEKHT----VSKFFGSPPGYVGFENG---GQLTEAVRH-RP 89 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~ 89 (287)
+++|+||+|||||++++.++..+... +..++.++|........ +...++......+.... ..+...+.. ..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~ 125 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDL 125 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCC
Confidence 69999999999999999999998665 46788899876553211 12223332222221111 122233333 33
Q ss_pred cEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 90 HSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 90 ~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
..+|+|||++.++...+..|.++++...-. + ..++.+|+++|.... ...+.+
T Consensus 126 ~~vlilDE~~~l~~~~~~~L~~~~~~~~~~---~----~~~~~iI~~~~~~~~---------------------~~~l~~ 177 (389)
T 1fnn_A 126 YMFLVLDDAFNLAPDILSTFIRLGQEADKL---G----AFRIALVIVGHNDAV---------------------LNNLDP 177 (389)
T ss_dssp CEEEEEETGGGSCHHHHHHHHHHTTCHHHH---S----SCCEEEEEEESSTHH---------------------HHTSCH
T ss_pred eEEEEEECccccchHHHHHHHHHHHhCCCC---C----cCCEEEEEEECCchH---------------------HHHhCH
Confidence 579999999999999999999998752100 0 024567888775421 124677
Q ss_pred hHHhccCc-eEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCC------CCCchhHHHHHHHH
Q 047225 170 EFLNRIDE-VIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNP------SYGARPLRRAIGRL 242 (287)
Q Consensus 170 ~l~~r~~~-~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~------~~~~r~l~~~i~~~ 242 (287)
.+.+|+.. .+.|+|++.+++.+++...+.... ....+++++++.++..++.. ..++|.+...+..+
T Consensus 178 ~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 178 STRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-------AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-------CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-------CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 88899865 799999999999999977765311 01258999999999987644 55677777777765
Q ss_pred HH
Q 047225 243 LE 244 (287)
Q Consensus 243 ~~ 244 (287)
..
T Consensus 251 ~~ 252 (389)
T 1fnn_A 251 AY 252 (389)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 57
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.62 E-value=3.4e-15 Score=129.78 Aligned_cols=160 Identities=21% Similarity=0.320 Sum_probs=111.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCC--CceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHH-----hCCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSK--EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVR-----HRPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 91 (287)
+++|+||||||||++++.+++.+.... ..++.+++++......+. ..+..... .+++.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 112 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR---------------EKVKEFARTKPIGGASFK 112 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH---------------HHHHHHHHSCCGGGCSCE
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH---------------HHHHHHHhhCCcCCCCCe
Confidence 599999999999999999999873322 235556654432111111 11112211 14468
Q ss_pred EEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhH
Q 047225 92 VILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEF 171 (287)
Q Consensus 92 il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (287)
+++|||+|.++...++.|++++++.. .++.+|+++|... .+.+.+
T Consensus 113 vliiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~i~~~~~~~------------------------~l~~~l 157 (327)
T 1iqp_A 113 IIFLDEADALTQDAQQALRRTMEMFS-----------SNVRFILSCNYSS------------------------KIIEPI 157 (327)
T ss_dssp EEEEETGGGSCHHHHHHHHHHHHHTT-----------TTEEEEEEESCGG------------------------GSCHHH
T ss_pred EEEEeCCCcCCHHHHHHHHHHHHhcC-----------CCCeEEEEeCCcc------------------------ccCHHH
Confidence 99999999999999999999998631 3457888887642 346789
Q ss_pred HhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHH
Q 047225 172 LNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 172 ~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
.+|+ ..+.|+|++.+++.+++...+.. . .+.++++++++++..+ ..++|.+...++.
T Consensus 158 ~sr~-~~~~~~~l~~~~~~~~l~~~~~~-------~--~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 158 QSRC-AIFRFRPLRDEDIAKRLRYIAEN-------E--GLELTEEGLQAILYIA---EGDMRRAINILQA 214 (327)
T ss_dssp HHTE-EEEECCCCCHHHHHHHHHHHHHT-------T--TCEECHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HhhC-cEEEecCCCHHHHHHHHHHHHHh-------c--CCCCCHHHHHHHHHHC---CCCHHHHHHHHHH
Confidence 9999 68999999999999988665532 1 3579999999998864 2345555555543
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=7.7e-15 Score=130.47 Aligned_cols=184 Identities=21% Similarity=0.228 Sum_probs=121.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC--------CCceEEecccccc-cccc-----hhhhhCCCCCCCcccch---hhH
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS--------KEAMVRIDMSEYM-EKHT-----VSKFFGSPPGYVGFENG---GQL 81 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~--------~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~---~~~ 81 (287)
+++|+||||||||++++.+++.+... +..++.++|.... .... ...+.+...+..+.... ..+
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 126 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKI 126 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 79999999999999999999987332 5678888887654 3211 22233433333333222 223
Q ss_pred HHHHHhCCcEEEEEcCcccccHHH-HHH-HHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHH
Q 047225 82 TEAVRHRPHSVILFDEIEKAHRDV-LNV-MLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGV 159 (287)
Q Consensus 82 ~~~~~~~~~~il~iDeid~~~~~~-~~~-L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~ 159 (287)
...+...+ .+|+|||+|.+.... ++. +..++... .++.+|+++|..+.
T Consensus 127 ~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~~------------~~~~iI~~t~~~~~----------------- 176 (384)
T 2qby_B 127 KNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRSD------------ANISVIMISNDINV----------------- 176 (384)
T ss_dssp HHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTSS------------SCEEEEEECSSTTT-----------------
T ss_pred HHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcCC------------cceEEEEEECCCch-----------------
Confidence 33444444 399999999987542 455 55555532 35678888886431
Q ss_pred HHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHH
Q 047225 160 AEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 160 ~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i 239 (287)
...+.+.+.+|+...+.|+|++.+++.+++...+... + ....+++++++.++..++....++|.+..++
T Consensus 177 ----~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~---~----~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l 245 (384)
T 2qby_B 177 ----RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG---L----IKGTYDDEILSYIAAISAKEHGDARKAVNLL 245 (384)
T ss_dssp ----TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT---S----CTTSCCSHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred ----HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh---c----ccCCcCHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 1145688999987799999999999999998776420 1 0235788999999887664445566666655
Q ss_pred HHHH
Q 047225 240 GRLL 243 (287)
Q Consensus 240 ~~~~ 243 (287)
+.+.
T Consensus 246 ~~a~ 249 (384)
T 2qby_B 246 FRAA 249 (384)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 59
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.61 E-value=3.9e-15 Score=140.13 Aligned_cols=133 Identities=11% Similarity=0.151 Sum_probs=87.1
Q ss_pred HHhCCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCC----------ceeeccceEEEEeecCCchhhhhhccCCchH
Q 047225 85 VRHRPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKG----------QTVDLKNTIIIMTSNIGDSVIARESILGSDQ 154 (287)
Q Consensus 85 ~~~~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g----------~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~ 154 (287)
+.....+++||||++.+++..++.|+++++++.+..... ..-...++.+|+++|+..
T Consensus 197 ~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~------------- 263 (604)
T 3k1j_A 197 IHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT------------- 263 (604)
T ss_dssp HHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH-------------
T ss_pred eeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH-------------
Confidence 334455799999999999999999999999988765321 111124788999999631
Q ss_pred HHHHHHHHHHhcCChhHHhccC---ceEEeCCCC---HHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccC-
Q 047225 155 MERGVAEELRRRFRPEFLNRID---EVIVFRQLN---KMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYN- 227 (287)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~r~~---~~i~~~~~~---~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~- 227 (287)
...|+++|++||. ..+.|++.. .+.+..++ ..+.......+....++++++..+..+.+.
T Consensus 264 ---------~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~ 330 (604)
T 3k1j_A 264 ---------VDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLV----QFVAQEVKRDGKIPHFTKEAVEEIVREAQKR 330 (604)
T ss_dssp ---------HHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHH----HHHHHHHHHHCSSCCBBHHHHHHHHHHHHHT
T ss_pred ---------HhhcCHHHHHHhhccceEeeccccccCCHHHHHHHH----HHHHHHHhhccCcccCCHHHHHHHHHHHhhh
Confidence 1257899999995 346655443 33344444 333333332223468999999999987542
Q ss_pred -CC-----CCchhHHHHHHHHH
Q 047225 228 -PS-----YGARPLRRAIGRLL 243 (287)
Q Consensus 228 -~~-----~~~r~l~~~i~~~~ 243 (287)
.. .+.|++.+.+..+.
T Consensus 331 ~g~r~~l~~~~R~l~~llr~A~ 352 (604)
T 3k1j_A 331 AGRKGHLTLRLRDLGGIVRAAG 352 (604)
T ss_dssp TCSTTEEECCHHHHHHHHHHHH
T ss_pred hccccccccCHHHHHHHHHHHH
Confidence 21 25677777776543
No 60
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.60 E-value=6.3e-16 Score=144.82 Aligned_cols=202 Identities=15% Similarity=0.141 Sum_probs=119.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEE----ecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVR----IDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
+++|+||||||||++|+++++.+.. ..+. .++....... ....+. +.... ..+.+ .....+++|
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r---~~~~~~~~~~~~~l~~~~-~~~~~~---g~~~~-~~G~l----~~A~~gil~ 396 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPR---AVYTTGKGSTAAGLTAAV-VREKGT---GEYYL-EAGAL----VLADGGIAV 396 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSC---EECCCTTCSTTTTSEEEC-SSGGGT---SSCSE-EECHH----HHHSSSEEC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCC---ceecCCCcccccccccee-eecccc---ccccc-cCCee----EecCCCcEE
Confidence 6999999999999999999988732 2221 1112211110 000010 00000 11122 222446999
Q ss_pred EcCcccccHHHHHHHHHhhcCceeecC-CCceeec-cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHH
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDGRVTDG-KGQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFL 172 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~~~~~~-~g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 172 (287)
|||+|+++++.++.|+++|+++.+... .|..... .++.+|+|+|+......... .... .-.++++|+
T Consensus 397 IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~-----~~~~------ni~l~~aLl 465 (595)
T 3f9v_A 397 IDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISER-----PVSD------NINLPPTIL 465 (595)
T ss_dssp CTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTS-----CSCT------TTCSCSSSG
T ss_pred eehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCccc-----Cchh------ccCCCHHHH
Confidence 999999999999999999999988754 3555555 47899999998642211100 0000 015789999
Q ss_pred hccCceEEeCCCCHHHHHHHHHHHHH-----------------HHHHHHHhcCcEEEeChhHHHHHHHhcc---------
Q 047225 173 NRIDEVIVFRQLNKMQLMEIVDIMLK-----------------EIYERLEAKNMELTVTHTFKKKLIEEGY--------- 226 (287)
Q Consensus 173 ~r~~~~i~~~~~~~~~~~~il~~~l~-----------------~~~~~~~~~~~~~~i~~~~~~~l~~~~~--------- 226 (287)
+|||..+.+.++...+...|+.+.+. ++....+. .....+++++.+.|.....
T Consensus 466 ~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~-~~~p~ls~ea~~~l~~~y~~lR~~~~~~ 544 (595)
T 3f9v_A 466 SRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARK-YVTPKITSEAKNLITDFFVEMRKKSSET 544 (595)
T ss_dssp GGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHH-HHCCCCCCCTHHHHHHHHTTSSCSCCBC
T ss_pred hhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 99986655555443335666655442 12111111 1133688888888887521
Q ss_pred ---CCCCCchhHHHHHHHHHH
Q 047225 227 ---NPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 227 ---~~~~~~r~l~~~i~~~~~ 244 (287)
....++|.+..++..+..
T Consensus 545 ~~~~~~~s~R~l~~lirla~a 565 (595)
T 3f9v_A 545 PDSPILITPRQLEALIRISEA 565 (595)
T ss_dssp SSSCBCSSTTTTTHHHHHHHH
T ss_pred CCccccccHHHHHHHHHHHHH
Confidence 235677888887774433
No 61
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.59 E-value=1.3e-14 Score=123.30 Aligned_cols=171 Identities=23% Similarity=0.307 Sum_probs=108.0
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
.+..+++|+||||||||++|+++++.+ +.+++.+++.+.. +|..... .......+++.......++||
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~~--------~g~~~~~-~~~~~~~~~~~~~~~~~~vl~ 129 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDKM--------IGFSETA-KCQAMKKIFDDAYKSQLSCVV 129 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGGC--------TTCCHHH-HHHHHHHHHHHHHTSSEEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHHh--------cCCchHH-HHHHHHHHHHHHHhcCCcEEE
Confidence 344579999999999999999999997 6778888775411 1110000 000112333444445678999
Q ss_pred EcCcccc----------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 95 FDEIEKA----------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 95 iDeid~~----------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|||+|.+ ...++..|..+++.... ...++++|+++|....
T Consensus 130 iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~--------~~~~~~ii~ttn~~~~---------------------- 179 (272)
T 1d2n_A 130 VDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP--------QGRKLLIIGTTSRKDV---------------------- 179 (272)
T ss_dssp ECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCS--------TTCEEEEEEEESCHHH----------------------
T ss_pred EEChhhhhccCCCChhHHHHHHHHHHHHhcCccC--------CCCCEEEEEecCChhh----------------------
Confidence 9999987 56677777777764210 0124568888886421
Q ss_pred hcCCh-hHHhccCceEEeCCCCH-HHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCC--CCCchhHHHHHH
Q 047225 165 RRFRP-EFLNRIDEVIVFRQLNK-MQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNP--SYGARPLRRAIG 240 (287)
Q Consensus 165 ~~~~~-~l~~r~~~~i~~~~~~~-~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~--~~~~r~l~~~i~ 240 (287)
+.+ .+.+||+..+.+||++. +++..++... . .++++.+..++...... ..++|.+...++
T Consensus 180 --l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~-----------~---~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 180 --LQEMEMLNAFSTTIHVPNIATGEQLLEALELL-----------G---NFKDKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp --HHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH-----------T---CSCHHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred --cchhhhhcccceEEcCCCccHHHHHHHHHHhc-----------C---CCCHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 112 46789888899999997 6666655321 1 35788888888764321 225677777766
Q ss_pred HHH
Q 047225 241 RLL 243 (287)
Q Consensus 241 ~~~ 243 (287)
.+.
T Consensus 244 ~a~ 246 (272)
T 1d2n_A 244 MSL 246 (272)
T ss_dssp HHT
T ss_pred HHh
Confidence 543
No 62
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.59 E-value=2.5e-14 Score=124.03 Aligned_cols=161 Identities=13% Similarity=0.228 Sum_probs=112.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC--CCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHH-------hCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS--KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVR-------HRP 89 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 89 (287)
+++|+||+|+|||++++.+++.+... ...++.+++++......+ ..+.+.+. .+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i----------------~~~~~~~~~~~~~~~~~~ 107 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV----------------RNQIKHFAQKKLHLPPGK 107 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH----------------HTHHHHHHHBCCCCCTTC
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH----------------HHHHHHHHhccccCCCCC
Confidence 49999999999999999999987322 234556665442111111 12222222 233
Q ss_pred cEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 90 HSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 90 ~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
+.+++|||++.++...++.|++++++. .+++.+|+++|... .+.+
T Consensus 108 ~~viiiDe~~~l~~~~~~~L~~~le~~-----------~~~~~~il~~~~~~------------------------~l~~ 152 (323)
T 1sxj_B 108 HKIVILDEADSMTAGAQQALRRTMELY-----------SNSTRFAFACNQSN------------------------KIIE 152 (323)
T ss_dssp CEEEEEESGGGSCHHHHHTTHHHHHHT-----------TTTEEEEEEESCGG------------------------GSCH
T ss_pred ceEEEEECcccCCHHHHHHHHHHHhcc-----------CCCceEEEEeCChh------------------------hchh
Confidence 689999999999999999999999863 13557888887632 3468
Q ss_pred hHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
.+.+|+ ..+.|+|++.+++.+++...+... .+.+++++++.++..+ +.++|.+.+.++...
T Consensus 153 ~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~~---~G~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 153 PLQSQC-AILRYSKLSDEDVLKRLLQIIKLE---------DVKYTNDGLEAIIFTA---EGDMRQAINNLQSTV 213 (323)
T ss_dssp HHHTTS-EEEECCCCCHHHHHHHHHHHHHHH---------TCCBCHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHhhc-eEEeecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 899999 699999999999999997776432 2468899999998875 234555555555443
No 63
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.58 E-value=3e-14 Score=126.20 Aligned_cols=176 Identities=17% Similarity=0.234 Sum_probs=113.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccch-----hhhhC-CCCCCCcccchhhHHHHHHh----C
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTV-----SKFFG-SPPGYVGFENGGQLTEAVRH----R 88 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~----~ 88 (287)
.++|+||+|||||++++.+++.+..... .....|......... ..++. ...+..+......+.+.+.. +
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG 118 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHSCTTC-SCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccC
Confidence 5899999999999999999998843221 111112111100000 00000 00011122222334444332 3
Q ss_pred CcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCC
Q 047225 89 PHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFR 168 (287)
Q Consensus 89 ~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
.+.+++|||+|.++...++.|++.+++. ..++.+|++++... .+.
T Consensus 119 ~~~vliiDe~~~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~~------------------------~l~ 163 (373)
T 1jr3_A 119 RFKVYLIDEVHMLSRHSFNALLKTLEEP-----------PEHVKFLLATTDPQ------------------------KLP 163 (373)
T ss_dssp SSEEEEEECGGGSCHHHHHHHHHHHHSC-----------CSSEEEEEEESCGG------------------------GSC
T ss_pred CeEEEEEECcchhcHHHHHHHHHHHhcC-----------CCceEEEEEeCChH------------------------hCc
Confidence 3579999999999999999999999862 13557787776432 345
Q ss_pred hhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 169 PEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 169 ~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
+.+.+|+ ..+.|+|++.+++.+++...+.+. .+.+++++++.++..+ +.++|.+.+.+++++
T Consensus 164 ~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~---------~~~~~~~a~~~l~~~~---~G~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 164 VTILSRC-LQFHLKALDVEQIRHQLEHILNEE---------HIAHEPRALQLLARAA---EGSLRDALSLTDQAI 225 (373)
T ss_dssp HHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH---------TCCBCHHHHHHHHHHS---SSCHHHHHHHHHHHH
T ss_pred HHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHC---CCCHHHHHHHHHHHH
Confidence 7889999 899999999999999997776542 3468899999998865 345666666666543
No 64
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=6.7e-14 Score=123.18 Aligned_cols=104 Identities=10% Similarity=0.114 Sum_probs=79.5
Q ss_pred CcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCC
Q 047225 89 PHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFR 168 (287)
Q Consensus 89 ~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (287)
++.+++|||++.+++..++.|++.+++. ..+..+|++|+... .+.
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~-----------~~~~~~Il~t~~~~------------------------~l~ 178 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKY-----------SKNIRLIMVCDSMS------------------------PII 178 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHS-----------TTTEEEEEEESCSC------------------------SSC
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhh-----------cCCCEEEEEeCCHH------------------------HHH
Confidence 4569999999999999999999999862 12456788777543 245
Q ss_pred hhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeC-hhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 169 PEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVT-HTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 169 ~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~-~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
+.+.+|+ ..+.|+|++.+++.+++...+.+. .+.++ +++++.++..+. .++|.+...++
T Consensus 179 ~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~l~~i~~~~~---G~~r~a~~~l~ 238 (354)
T 1sxj_E 179 APIKSQC-LLIRCPAPSDSEISTILSDVVTNE---------RIQLETKDILKRIAQASN---GNLRVSLLMLE 238 (354)
T ss_dssp HHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH---------TCEECCSHHHHHHHHHHT---TCHHHHHHHHT
T ss_pred HHHHhhc-eEEecCCcCHHHHHHHHHHHHHHc---------CCCCCcHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 7899999 899999999999999997776542 35788 999999998752 34444444444
No 65
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.57 E-value=1.9e-13 Score=119.54 Aligned_cols=169 Identities=17% Similarity=0.299 Sum_probs=110.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh-CCcEEEEEc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH-RPHSVILFD 96 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~iD 96 (287)
.+++|+||||+||||++++++..+ +.++...+...... ...+...... ....|+|+|
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg~~~~~-------------------~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVLVK-------------------QGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTCCS-------------------HHHHHHHHHHCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEechHhcC-------------------HHHHHHHHHHccCCCEEEEc
Confidence 479999999999999999999998 33332222111110 1122222222 234699999
Q ss_pred CcccccHHHHHHHHHhhcCceeec--CCC---ce--eeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 97 EIEKAHRDVLNVMLQLLDDGRVTD--GKG---QT--VDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~~~~~~--~~g---~~--i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
|++.+.+..++.|+..++.+.... ..+ .. ...+.+.++.+++... .+++
T Consensus 110 E~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~------------------------~Ls~ 165 (334)
T 1in4_A 110 EIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG------------------------LLSS 165 (334)
T ss_dssp TGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG------------------------GSCH
T ss_pred chhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc------------------------cCCH
Confidence 999999888888888877643210 001 11 1224556666666532 4578
Q ss_pred hHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
.+.+||...+.++|++.+++.++++..... . .+.++++++.+++..+. .++|.+.+.++++..
T Consensus 166 ~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-------~--~~~~~~~~~~~ia~~~~---G~~R~a~~ll~~~~~ 228 (334)
T 1in4_A 166 PLRSRFGIILELDFYTVKELKEIIKRAASL-------M--DVEIEDAAAEMIAKRSR---GTPRIAIRLTKRVRD 228 (334)
T ss_dssp HHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------T--TCCBCHHHHHHHHHTST---TCHHHHHHHHHHHHH
T ss_pred HHHHhcCceeeCCCCCHHHHHHHHHHHHHH-------c--CCCcCHHHHHHHHHhcC---CChHHHHHHHHHHHH
Confidence 899999777999999999999999766542 1 35789999999988642 455666666665433
No 66
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.57 E-value=6.6e-14 Score=119.04 Aligned_cols=179 Identities=20% Similarity=0.257 Sum_probs=115.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||+++++++..+ +..++.++..+...... .. .......+++.......+++++||+
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l~~~~~-~~---------~~~~i~~vf~~a~~~~p~i~~~Dei 112 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANES---GLNFISVKGPELLNMYV-GE---------SERAVRQVFQRAKNSAPCVIFFDEV 112 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTTCSSTT-HH---------HHHHHHHHHHHHHHTCSEEEEEETC
T ss_pred eEEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHHHhhhh-hH---------HHHHHHHHHHHHHhcCCCeEeeehh
Confidence 39999999999999999999988 44577777655432110 00 0001134455444445589999999
Q ss_pred ccccH-----------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKAHR-----------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~~~-----------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
|.+.. ...+.+...+..+.- -...++++++|.+. .+
T Consensus 113 d~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~---------~~~~i~ia~tn~p~------------------------~L 159 (274)
T 2x8a_A 113 DALCPRRSDRETGASVRVVNQLLTEMDGLEA---------RQQVFIMAATNRPD------------------------II 159 (274)
T ss_dssp TTTCC---------CTTHHHHHHHHHHTCCS---------TTCEEEEEEESCGG------------------------GS
T ss_pred hhhhcccCCCcchHHHHHHHHHHHhhhcccc---------cCCEEEEeecCChh------------------------hC
Confidence 96421 233444444443311 12346777887653 45
Q ss_pred ChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEe-ChhHHHHHHHhccCCCCCchhHHHHHHHHHH
Q 047225 168 RPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTV-THTFKKKLIEEGYNPSYGARPLRRAIGRLLE 244 (287)
Q Consensus 168 ~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i-~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~ 244 (287)
++++++ ||+..|.+++|+.++..+|++.++... . ...+ .+-.++.++......+++..++...++++..
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~------~--~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~ 231 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNG------T--KPPLDADVNLEAIAGDLRCDCYTGADLSALVREASI 231 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTT------B--TTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHH
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcc------c--CCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHH
Confidence 788887 999999999999999999997665320 0 1112 2233566665433446788999999999998
Q ss_pred HHHHHHH
Q 047225 245 DNLAEII 251 (287)
Q Consensus 245 ~~~~~~~ 251 (287)
.++.+..
T Consensus 232 ~a~~~~~ 238 (274)
T 2x8a_A 232 CALRQEM 238 (274)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 8876543
No 67
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.57 E-value=6e-16 Score=131.18 Aligned_cols=169 Identities=22% Similarity=0.340 Sum_probs=107.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++++++++.+ ..+++.++++.+... ..+... .....+++.+.....++|||||+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~-----~~~~~~-----~~~~~~~~~a~~~~~~vl~iDEi 112 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIEM-----FVGLGA-----SRVRDLFETAKKQAPSIIFIDEI 112 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTTS-----CSSSCS-----SSSSTTHHHHHHSCSCEEEESCG
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHHh-----hcchHH-----HHHHHHHHHHHhcCCeEEEEeCh
Confidence 48999999999999999999998 567777777665432 111111 11124455555545579999999
Q ss_pred ccccHHH---------------HHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 99 EKAHRDV---------------LNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 99 d~~~~~~---------------~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
|.+.... +..|+..++... -...++++|+++|...
T Consensus 113 d~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v~vi~ttn~~~---------------------- 162 (268)
T 2r62_A 113 DAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG--------SENAPVIVLAATNRPE---------------------- 162 (268)
T ss_dssp GGTTC----------CCCSCSSTTTTTTTTTCSS--------CSCSCCEEEECBSCCT----------------------
T ss_pred hhhcccccccccCCCchhHHHHHHHHHHHhhCcc--------cCCCCEEEEEecCCch----------------------
Confidence 9886532 233333333210 0112468889998763
Q ss_pred HhcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHH
Q 047225 164 RRRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 164 ~~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
.+++++++ ||+..+.+++|+.++..++++..+... . +. ++..++.++.. ..+++.++++.++++
T Consensus 163 --~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~-------~--~~-~~~~~~~la~~--~~g~~g~dl~~l~~~ 228 (268)
T 2r62_A 163 --ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV-------K--LA-NDVNLQEVAKL--TAGLAGADLANIINE 228 (268)
T ss_dssp --TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSS-------C--CC-SSCCTTTTTSS--SCSSCHHHHHHHHHH
T ss_pred --hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcC-------C--CC-CccCHHHHHHH--cCCCCHHHHHHHHHH
Confidence 34577887 898889999999999999996655321 1 11 22224445443 234566888888886
Q ss_pred HHH
Q 047225 242 LLE 244 (287)
Q Consensus 242 ~~~ 244 (287)
+..
T Consensus 229 a~~ 231 (268)
T 2r62_A 229 AAL 231 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.57 E-value=8e-14 Score=126.96 Aligned_cols=102 Identities=19% Similarity=0.290 Sum_probs=72.9
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
+|+||||++.++.+.+++|++.+++.. .. +||+++|++...+-.. + .......+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~-----------~~-~~il~tn~~~~~i~~~------~-----~~~~~~~l~~~ 353 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSI-----------AP-IVIFASNRGNCVIRGT------E-----DITSPHGIPLD 353 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTT-----------CC-EEEEEECCSEEECBTT------S-----SCEEETTCCHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccC-----------CC-EEEEecCCcccccccc------c-----cccccccCChh
Confidence 599999999999999999999999741 12 4666666531100000 0 00000246789
Q ss_pred HHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 171 l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
+++|| ..+.|+|++.+++.++++..+... .+.++++++..++..+
T Consensus 354 i~sR~-~~~~~~~~~~~e~~~iL~~~~~~~---------~~~~~~~~~~~i~~~a 398 (456)
T 2c9o_A 354 LLDRV-MIIRTMLYTPQEMKQIIKIRAQTE---------GINISEEALNHLGEIG 398 (456)
T ss_dssp HHTTE-EEEECCCCCHHHHHHHHHHHHHHH---------TCCBCHHHHHHHHHHH
T ss_pred HHhhc-ceeeCCCCCHHHHHHHHHHHHHHh---------CCCCCHHHHHHHHHHc
Confidence 99999 668999999999999998776532 2468999999998875
No 69
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.56 E-value=1.1e-13 Score=121.15 Aligned_cols=156 Identities=11% Similarity=0.114 Sum_probs=99.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccccc--------chhhhhCCC-CCCCcccchhhHHHHHHh--
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKH--------TVSKFFGSP-PGYVGFENGGQLTEAVRH-- 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 87 (287)
.++|+||+|+|||++++.+++.+......- ...|....... .+..+.+.. ....+.+..+.+.+.+..
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~ 104 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQQPQG-HKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHA 104 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCC
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhcc
Confidence 599999999999999999999984322100 00111100000 000000000 011222222233333332
Q ss_pred --CCcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHh
Q 047225 88 --RPHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRR 165 (287)
Q Consensus 88 --~~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (287)
+++.|++|||+|.++.+.++.|++.+++. .+++++|+++|...
T Consensus 105 ~~~~~kvviIdead~l~~~a~naLLk~lEep-----------~~~~~~Il~t~~~~------------------------ 149 (334)
T 1a5t_A 105 RLGGAKVVWVTDAALLTDAAANALLKTLEEP-----------PAETWFFLATREPE------------------------ 149 (334)
T ss_dssp TTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-----------CTTEEEEEEESCGG------------------------
T ss_pred ccCCcEEEEECchhhcCHHHHHHHHHHhcCC-----------CCCeEEEEEeCChH------------------------
Confidence 34689999999999999999999999973 13567888777532
Q ss_pred cCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 166 RFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 166 ~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
.+.+.+.+|+ ..+.|+|++.+++.+++...+ .++++++..++..+
T Consensus 150 ~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~--------------~~~~~~~~~l~~~s 194 (334)
T 1a5t_A 150 RLLATLRSRC-RLHYLAPPPEQYAVTWLSREV--------------TMSQDALLAALRLS 194 (334)
T ss_dssp GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC--------------CCCHHHHHHHHHHT
T ss_pred hCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc--------------CCCHHHHHHHHHHc
Confidence 4568999999 889999999999998885432 35777777777654
No 70
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.55 E-value=1e-14 Score=133.20 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=97.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcC-------CCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFG-------SKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPH 90 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (287)
++++|+||||||||++++.++..+.. .+.+++.++++.. ..|. . ......+++.+...+.
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~--------~~g~----~-e~~~~~~~~~~~~~~~ 268 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTK--------YRGE----F-EDRLKKVMDEIRQAGN 268 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------------CTTHHHHHHHHHTCCC
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCcc--------ccch----H-HHHHHHHHHHHHhcCC
Confidence 37999999999999999999999733 2445666666510 0000 0 0112355666666666
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
.|+||| ...+.++.|++.++.+ ++.+|+++|.....- . ..++++
T Consensus 269 ~iLfiD----~~~~a~~~L~~~L~~g-------------~v~vI~at~~~e~~~-----------------~--~~~~~a 312 (468)
T 3pxg_A 269 IILFID----AAIDASNILKPSLARG-------------ELQCIGATTLDEYRK-----------------Y--IEKDAA 312 (468)
T ss_dssp CEEEEC----C--------CCCTTSS-------------SCEEEEECCTTTTHH-----------------H--HTTCSH
T ss_pred eEEEEe----CchhHHHHHHHhhcCC-------------CEEEEecCCHHHHHH-----------------H--hhcCHH
Confidence 899999 5567778888888764 456888888764210 0 134689
Q ss_pred HHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 171 l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
|.+|| ..+.|++|+.+++.+|+...+..+.. ...+.++++++..++..+
T Consensus 313 l~~Rf-~~i~v~~p~~e~~~~iL~~~~~~~~~-----~~~~~i~~~al~~l~~~s 361 (468)
T 3pxg_A 313 LERRF-QPIQVDQPSVDESIQILQGLRDRYEA-----HHRVSITDDAIEAAVKLS 361 (468)
T ss_dssp HHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG-----GSSCSCCHHHHHHHHHHH
T ss_pred HHHhC-ccceeCCCCHHHHHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHH
Confidence 99999 67999999999999999766544321 124678889988888753
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.55 E-value=5.6e-14 Score=124.62 Aligned_cols=188 Identities=19% Similarity=0.153 Sum_probs=118.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC---CCceEEecccccccccch----hhhhCCCCCCCcccc---hhhHHHHHHhC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS---KEAMVRIDMSEYMEKHTV----SKFFGSPPGYVGFEN---GGQLTEAVRHR 88 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~ 88 (287)
+++|+||+|||||++++.+++.+... +..+++++|......... ...++......+... ...+...+...
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~ 126 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDY 126 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 69999999999999999999987433 567788888654432111 112222221222111 12234444443
Q ss_pred C-cEEEEEcCccccc----HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 89 P-HSVILFDEIEKAH----RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 89 ~-~~il~iDeid~~~----~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
. ..+|+|||++.+. .+.+..|.+.++.. ...++.+|++++.....
T Consensus 127 ~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~----------~~~~~~~I~~~~~~~~~-------------------- 176 (386)
T 2qby_A 127 GSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV----------NKSKISFIGITNDVKFV-------------------- 176 (386)
T ss_dssp CSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC----------CC--EEEEEEESCGGGG--------------------
T ss_pred CCeEEEEEcChhhhhccCcCHHHHHHhhchhhc----------CCCeEEEEEEECCCChH--------------------
Confidence 3 5799999999875 45666677766532 01245678888754311
Q ss_pred HhcCChhHHhccCc-eEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHH
Q 047225 164 RRRFRPEFLNRIDE-VIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 164 ~~~~~~~l~~r~~~-~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~ 242 (287)
..+.+.+.+|+.. .+.++|++.+++.+++...+... .....++++++++++..++....++|.+.+++..+
T Consensus 177 -~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a 248 (386)
T 2qby_A 177 -DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA-------FKPGVLPDNVIKLCAALAAREHGDARRALDLLRVS 248 (386)
T ss_dssp -GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH-------BCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred -hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh-------ccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 1345778888864 79999999999999997766421 11246788999998887654335566666665554
Q ss_pred HH
Q 047225 243 LE 244 (287)
Q Consensus 243 ~~ 244 (287)
..
T Consensus 249 ~~ 250 (386)
T 2qby_A 249 GE 250 (386)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 72
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.54 E-value=1.4e-13 Score=115.62 Aligned_cols=170 Identities=23% Similarity=0.335 Sum_probs=107.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||+++++++..+ ...++.+++.++.... . +. .......+++........++++||+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~~~~-----~----~~-~~~~i~~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEMF-----V----GV-GAARVRDLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHSC-----T----TH-HHHHHHHHHHHHTTSSSEEEEEETH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHHHHH-----h----hH-HHHHHHHHHHHHHhcCCeEEEehhh
Confidence 39999999999999999999988 4567777765443211 0 00 0000123444444334589999999
Q ss_pred ccccH--------------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 99 EKAHR--------------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 99 d~~~~--------------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|.+.. ..++.++..++.+.- -...++++++|.+.
T Consensus 118 d~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~---------~~~~i~~a~t~~p~----------------------- 165 (254)
T 1ixz_A 118 DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---------DTAIVVMAATNRPD----------------------- 165 (254)
T ss_dssp HHHHC---------CHHHHHHHHHHHHHHHTCCT---------TCCEEEEEEESCGG-----------------------
T ss_pred hhhhcccCccccccchHHHHHHHHHHHHHhCCCC---------CCCEEEEEccCCch-----------------------
Confidence 86521 233444444543210 01346677777652
Q ss_pred hcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhH-HHHHHHhccCCCCCchhHHHHHHH
Q 047225 165 RRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTF-KKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 165 ~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
.+++++++ ||+..+.+++|+.++..+|++..+. + ..+.+++ +..++.. .++++.++++.++++
T Consensus 166 -~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~---------~--~~~~~~~~~~~la~~--~~G~~~~dl~~~~~~ 231 (254)
T 1ixz_A 166 -ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR---------G--KPLAEDVDLALLAKR--TPGFVGADLENLLNE 231 (254)
T ss_dssp -GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT---------T--SCBCTTCCHHHHHHT--CTTCCHHHHHHHHHH
T ss_pred -hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc---------C--CCCCcccCHHHHHHH--cCCCCHHHHHHHHHH
Confidence 35678887 8999999999999999999865432 1 1344444 6666664 234556899999998
Q ss_pred HHHHHH
Q 047225 242 LLEDNL 247 (287)
Q Consensus 242 ~~~~~~ 247 (287)
+...+.
T Consensus 232 a~~~a~ 237 (254)
T 1ixz_A 232 AALLAA 237 (254)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776443
No 73
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=2.4e-14 Score=125.58 Aligned_cols=147 Identities=23% Similarity=0.372 Sum_probs=102.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCC--ceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHH-----hCCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKE--AMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVR-----HRPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 91 (287)
+++|+||+|||||++++++++.+..... .+..++.++......+. ..+..... ..++.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir---------------~~i~~~~~~~~~~~~~~~ 112 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR---------------NQIKDFASTRQIFSKGFK 112 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH---------------THHHHHHHBCCSSSCSCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHH---------------HHHHHHHhhcccCCCCce
Confidence 5999999999999999999999854332 23344443211100000 01111111 12358
Q ss_pred EEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhH
Q 047225 92 VILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEF 171 (287)
Q Consensus 92 il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (287)
+++|||+|.+..+.++.|++++++.. ....+|+++|... .+.+.+
T Consensus 113 viiiDe~~~l~~~~~~~L~~~le~~~-----------~~~~~il~~n~~~------------------------~i~~~i 157 (340)
T 1sxj_C 113 LIILDEADAMTNAAQNALRRVIERYT-----------KNTRFCVLANYAH------------------------KLTPAL 157 (340)
T ss_dssp EEEETTGGGSCHHHHHHHHHHHHHTT-----------TTEEEEEEESCGG------------------------GSCHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCC-----------CCeEEEEEecCcc------------------------ccchhH
Confidence 99999999999999999999998631 3456888888642 346889
Q ss_pred HhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 172 LNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 172 ~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
.+|+ ..+.|+|++.+++.+++...+.. . .+.+++++...++..+
T Consensus 158 ~sR~-~~~~~~~l~~~~~~~~l~~~~~~-------~--~~~i~~~~~~~i~~~s 201 (340)
T 1sxj_C 158 LSQC-TRFRFQPLPQEAIERRIANVLVH-------E--KLKLSPNAEKALIELS 201 (340)
T ss_dssp HTTS-EEEECCCCCHHHHHHHHHHHHHT-------T--TCCBCHHHHHHHHHHH
T ss_pred Hhhc-eeEeccCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHHHHHc
Confidence 9999 78999999999999888666532 1 3568889998888765
No 74
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.51 E-value=6.4e-14 Score=129.54 Aligned_cols=168 Identities=16% Similarity=0.171 Sum_probs=105.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHH-----HhCCcEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAV-----RHRPHSV 92 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~i 92 (287)
.+++|+||||||||++|+++++.+ +.+++.+++++......+...+....... ....++... ......+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~v 151 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSKTLLNAGVKNALDNM---SVVGYFKHNEEAQNLNGKHFV 151 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCHHHHHHTGGGGTTBC---CSTTTTTC----CCSSTTSEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchHHHHHHHHHHHhccc---cHHHHHhhhhhhhhccCCCeE
Confidence 479999999999999999999998 67889999987654322222211100000 000111111 2245589
Q ss_pred EEEcCcccccHHH---HHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 93 ILFDEIEKAHRDV---LNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 93 l~iDeid~~~~~~---~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
|||||+|.+.... ...|.++++.. +..+|+++|..... .+ +
T Consensus 152 liIDEid~l~~~~~~~l~~L~~~l~~~-------------~~~iIli~~~~~~~----------------------~l-~ 195 (516)
T 1sxj_A 152 IIMDEVDGMSGGDRGGVGQLAQFCRKT-------------STPLILICNERNLP----------------------KM-R 195 (516)
T ss_dssp EEECSGGGCCTTSTTHHHHHHHHHHHC-------------SSCEEEEESCTTSS----------------------TT-G
T ss_pred EEEECCCccchhhHHHHHHHHHHHHhc-------------CCCEEEEEcCCCCc----------------------cc-h
Confidence 9999999986643 46777777752 22355555532211 12 3
Q ss_pred hHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
.+.+|+ ..+.|++|+.+++.+++...+.+. .+.+++++++.|+..+. .++|.+.+.++
T Consensus 196 ~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~---------~~~i~~~~l~~la~~s~---GdiR~~i~~L~ 253 (516)
T 1sxj_A 196 PFDRVC-LDIQFRRPDANSIKSRLMTIAIRE---------KFKLDPNVIDRLIQTTR---GDIRQVINLLS 253 (516)
T ss_dssp GGTTTS-EEEECCCCCHHHHHHHHHHHHHHH---------TCCCCTTHHHHHHHHTT---TCHHHHHHHHT
T ss_pred hhHhce-EEEEeCCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHcC---CcHHHHHHHHH
Confidence 455666 789999999999999987665432 24689999999988742 33444444444
No 75
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.51 E-value=4.9e-13 Score=113.89 Aligned_cols=169 Identities=21% Similarity=0.305 Sum_probs=105.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
.++|+||||||||+++++++..+ ...++.+++.++..... +. .......+++........++++||+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~~~~~~~~---------~~-~~~~i~~~~~~~~~~~~~i~~iDei 141 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEMFV---------GV-GAARVRDLFETAKRHAPCIVFIDEI 141 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHSTT---------TH-HHHHHHHHHHHHHTSCSEEEEEETH
T ss_pred eEEEECCCcChHHHHHHHHHHHc---CCCEEEecHHHHHHHHh---------hH-HHHHHHHHHHHHHhcCCcEEehhhh
Confidence 39999999999999999999988 45677777655432110 00 0000123444444344589999999
Q ss_pred cccc-----------HHHHHH---HHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 99 EKAH-----------RDVLNV---MLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 99 d~~~-----------~~~~~~---L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|.+. ...... ++..+..+.. -...++++++|.+.
T Consensus 142 d~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~---------~~~~i~~a~t~~p~----------------------- 189 (278)
T 1iy2_A 142 DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---------DTAIVVMAATNRPD----------------------- 189 (278)
T ss_dssp HHHHCC--------CHHHHHHHHHHHHHHTTCCT---------TCCEEEEEEESCTT-----------------------
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHhCCCC---------CCCEEEEEecCCch-----------------------
Confidence 8642 122233 3333332210 11346777777652
Q ss_pred hcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhH-HHHHHHhccCCCCCchhHHHHHHH
Q 047225 165 RRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTF-KKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 165 ~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
.+++++++ ||+..+.+++|+.++..+|++..+.. ..+++++ +..++.. | +++..++++.++++
T Consensus 190 -~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-----------~~~~~~~~~~~la~~-~-~G~~~~dl~~l~~~ 255 (278)
T 1iy2_A 190 -ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-----------KPLAEDVDLALLAKR-T-PGFVGADLENLLNE 255 (278)
T ss_dssp -SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-----------SCBCTTCCHHHHHHT-C-TTCCHHHHHHHHHH
T ss_pred -hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc-----------CCCCcccCHHHHHHH-c-CCCCHHHHHHHHHH
Confidence 35678886 89999999999999999998654321 2344444 5666554 3 34455899999887
Q ss_pred HHHHH
Q 047225 242 LLEDN 246 (287)
Q Consensus 242 ~~~~~ 246 (287)
+...+
T Consensus 256 a~~~a 260 (278)
T 1iy2_A 256 AALLA 260 (278)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
No 76
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.50 E-value=5.6e-14 Score=128.41 Aligned_cols=166 Identities=23% Similarity=0.326 Sum_probs=106.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccc--hhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFEN--GGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~il~iD 96 (287)
.++|+||||||||+++++++..+ ..+++.++++++.... .+... ...+++.......+++|||
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~~------------~g~~~~~v~~lfq~a~~~~p~il~ID 130 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEMF------------VGVGAARVRDLFETAKRHAPCIVFID 130 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSSC------------TTHHHHHHHHHTTTSSSSSSCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHhh------------hhhHHHHHHHHHHHHHhcCCCEEEEe
Confidence 49999999999999999999988 5778888887654321 01000 0112222222234799999
Q ss_pred Cccccc-----------H---HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 97 EIEKAH-----------R---DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 97 eid~~~-----------~---~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
|+|.+. . ..++.|+..++.+.- ....++++++|.+.
T Consensus 131 EId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~---------~~~viviAatn~p~--------------------- 180 (499)
T 2dhr_A 131 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK---------DTAIVVMAATNRPD--------------------- 180 (499)
T ss_dssp CGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS---------SCCCEEEECCSCGG---------------------
T ss_pred hHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc---------CccEEEEEecCChh---------------------
Confidence 998653 1 233445555543210 12457888888752
Q ss_pred HHhcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhH-HHHHHHhccCCCCCchhHHHHH
Q 047225 163 LRRRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTF-KKKLIEEGYNPSYGARPLRRAI 239 (287)
Q Consensus 163 ~~~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~-~~~l~~~~~~~~~~~r~l~~~i 239 (287)
.+++++++ ||+..+.+++|+.++..+|++.++. ...+++++ +..++.. | +++..++++.++
T Consensus 181 ---~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~-----------~~~l~~dv~l~~lA~~-t-~G~~gadL~~lv 244 (499)
T 2dhr_A 181 ---ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR-----------GKPLAEDVDLALLAKR-T-PGFVGADLENLL 244 (499)
T ss_dssp ---GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS-----------SSCCCCSSTTHHHHTT-S-CSCCHHHHHHHH
T ss_pred ---hcCcccccccccceEEecCCCCHHHHHHHHHHHHh-----------cCCCChHHHHHHHHHh-c-CCCCHHHHHHHH
Confidence 24677876 8999999999999999998864432 12344444 5555543 3 344558999999
Q ss_pred HHHHHH
Q 047225 240 GRLLED 245 (287)
Q Consensus 240 ~~~~~~ 245 (287)
+++...
T Consensus 245 ~~Aa~~ 250 (499)
T 2dhr_A 245 NEAALL 250 (499)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 77
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.48 E-value=6.4e-14 Score=111.85 Aligned_cols=134 Identities=15% Similarity=0.215 Sum_probs=85.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC-------CCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHH-HhCCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG-------SKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAV-RHRPH 90 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 90 (287)
+++|+||+|||||++++.+++.+.. .+.+++.+++............. ......+...+ .....
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 116 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF--------EERLKGVLNDLAKQEGN 116 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHH--------HHHHHHHHHHHHHSTTT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccH--------HHHHHHHHHHHhhcCCC
Confidence 6999999999999999999998733 24566777775543211000000 00011222222 33445
Q ss_pred EEEEEcCccccc--------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 91 SVILFDEIEKAH--------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 91 ~il~iDeid~~~--------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
.+++|||+|.+. ...++.|..+++.+ ++.+|+++|......
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~-------------~~~~i~~~~~~~~~~------------------ 165 (195)
T 1jbk_A 117 VILFIDELHTMVGAGKADGAMDAGNMLKPALARG-------------ELHCVGATTLDEYRQ------------------ 165 (195)
T ss_dssp EEEEEETGGGGTT------CCCCHHHHHHHHHTT-------------SCCEEEEECHHHHHH------------------
T ss_pred eEEEEeCHHHHhccCcccchHHHHHHHHHhhccC-------------CeEEEEeCCHHHHHH------------------
Confidence 799999999985 33467777777653 345777777532110
Q ss_pred HHhcCChhHHhccCceEEeCCCCHHHHHHHH
Q 047225 163 LRRRFRPEFLNRIDEVIVFRQLNKMQLMEIV 193 (287)
Q Consensus 163 ~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il 193 (287)
...+++++.+||. .+.+++|+.++..+++
T Consensus 166 -~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 166 -YIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -HTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred -HHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 0124689999994 7999999999988765
No 78
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=4.2e-13 Score=115.63 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=99.0
Q ss_pred hhhhhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhc---CCCCceEEecccccccccchhhhhCCCCCCCcccchh
Q 047225 3 LERARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYF---GSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGG 79 (287)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (287)
++.++..+...+ .++++|+||||+|||++++++++.+. .....+..++.+.. ..+.+..+
T Consensus 6 ~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---------------~~~id~ir 68 (305)
T 2gno_A 6 LETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---------------NIGIDDIR 68 (305)
T ss_dssp HHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---------------CBCHHHHH
T ss_pred HHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC---------------CCCHHHHH
Confidence 455566555544 34799999999999999999998641 12334555554310 11111123
Q ss_pred hHHHHHHhC----CcEEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHH
Q 047225 80 QLTEAVRHR----PHSVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQM 155 (287)
Q Consensus 80 ~~~~~~~~~----~~~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~ 155 (287)
.+.+.+... ++.|++|||+|.+....+++|++.+++. .+++++|++|+.+.
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep-----------~~~t~fIl~t~~~~-------------- 123 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEP-----------PEYAVIVLNTRRWH-------------- 123 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSC-----------CTTEEEEEEESCGG--------------
T ss_pred HHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCC-----------CCCeEEEEEECChH--------------
Confidence 444444432 3589999999999999999999999973 23567888776532
Q ss_pred HHHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHH
Q 047225 156 ERGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIML 197 (287)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l 197 (287)
.+.+.+.+| .+.|+|++.+++.+++...+
T Consensus 124 ----------kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 124 ----------YLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ----------GSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred ----------hChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 456899999 89999999999999997765
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.47 E-value=3.2e-13 Score=131.91 Aligned_cols=158 Identities=15% Similarity=0.193 Sum_probs=98.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC-------CCCceEEecccccccccchhhhhCCCCCCCccc--chhhHHHHHHhC-
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG-------SKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFE--NGGQLTEAVRHR- 88 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~- 88 (287)
+++|+||||||||++++.++..+.. .+.+++.++++....... +.|.. ....++..+...
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~----------~~g~~~~~l~~~~~~~~~~~ 262 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAK----------YRGEFEERLKAVIQEVVQSQ 262 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------------CHHHHHHHHHHHHHTTC
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCc----------cchHHHHHHHHHHHHHHhcC
Confidence 6899999999999999999998732 256777888765532110 11100 012334444433
Q ss_pred CcEEEEEcCccccc--------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHH
Q 047225 89 PHSVILFDEIEKAH--------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVA 160 (287)
Q Consensus 89 ~~~il~iDeid~~~--------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~ 160 (287)
...||||||++.+. .+..+.|.++++.+ .+.+|+++|.+...
T Consensus 263 ~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~-------------~i~~I~at~~~~~~----------------- 312 (854)
T 1qvr_A 263 GEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARG-------------ELRLIGATTLDEYR----------------- 312 (854)
T ss_dssp SSEEEEECCC-------------------HHHHHTT-------------CCCEEEEECHHHHH-----------------
T ss_pred CCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCC-------------CeEEEEecCchHHh-----------------
Confidence 45799999999886 45666788888764 33577877754211
Q ss_pred HHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 161 EELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 161 ~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
+-...++|.+||+ .+.+++|+.++..+|++..+.++.... .+.++++++..++..+
T Consensus 313 ---~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~-----~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 313 ---EIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHH-----GVRISDSAIIAAATLS 368 (854)
T ss_dssp ---HHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHT-----TCEECHHHHHHHHHHH
T ss_pred ---hhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhc-----CCCCCHHHHHHHHHHH
Confidence 0134689999995 699999999999999988876654321 4688999999998764
No 80
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.45 E-value=2.9e-13 Score=142.93 Aligned_cols=203 Identities=17% Similarity=0.203 Sum_probs=125.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||++|+.+.... .+..+..++++.......+...+......... ..+.+......+...|+||||+
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~~--~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~-~~g~~~~P~~~gk~~VlFiDEi 1345 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRNS--SLYDVVGINFSKDTTTEHILSALHRHTNYVTT-SKGLTLLPKSDIKNLVLFCDEI 1345 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC--SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEE-TTTEEEEEBSSSSCEEEEEETT
T ss_pred eEEEECCCCCCHHHHHHHHHhcC--CCCceEEEEeecCCCHHHHHHHHHHHhhhccc-cCCccccCCCCCceEEEEeccc
Confidence 69999999999999996655544 24677788887766543333222111000000 0000000000123469999999
Q ss_pred ccccH------HHHHHHHHhhcCceeecCC-CceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhH
Q 047225 99 EKAHR------DVLNVMLQLLDDGRVTDGK-GQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEF 171 (287)
Q Consensus 99 d~~~~------~~~~~L~~~l~~~~~~~~~-g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (287)
|.... ..++.|+++++.|.+.... +..+...++.+|+|+|+++... +..++++|
T Consensus 1346 nmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gG-------------------R~~l~~rl 1406 (2695)
T 4akg_A 1346 NLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPG-------------------RIPMSERF 1406 (2695)
T ss_dssp TCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTT-------------------CCCCCHHH
T ss_pred ccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCC-------------------CccCChhh
Confidence 86543 3788999999998877653 5667778999999999975211 12578999
Q ss_pred HhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHh-cCcE---EEeChhHHHHHHHh-----ccCCCCCchhHHHHHHHH
Q 047225 172 LNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEA-KNME---LTVTHTFKKKLIEE-----GYNPSYGARPLRRAIGRL 242 (287)
Q Consensus 172 ~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~-~~~~---~~i~~~~~~~l~~~-----~~~~~~~~r~l~~~i~~~ 242 (287)
++|| ..+.+++|+.+++..|+...+......... .+.. +...-++...+... ..++-++.|++.++++.+
T Consensus 1407 lRrf-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~~~~~~~k~HY~FnlRDLsrv~qGl 1485 (2695)
T 4akg_A 1407 TRHA-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKARYSTGLQSHYLFSPRELTRLVRGV 1485 (2695)
T ss_dssp HTTE-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHHHSCTTTCTTCCCCHHHHHHHHHHH
T ss_pred hhee-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccCHHHHHHHHHHH
Confidence 9999 999999999999999998887643210000 0000 00011111121111 234577999999999877
Q ss_pred HH
Q 047225 243 LE 244 (287)
Q Consensus 243 ~~ 244 (287)
+.
T Consensus 1486 l~ 1487 (2695)
T 4akg_A 1486 YT 1487 (2695)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 81
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.45 E-value=4.3e-15 Score=143.79 Aligned_cols=174 Identities=25% Similarity=0.373 Sum_probs=114.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
.+++|+||||||||+++++++..+ +..++.+++++.... .+|... .....+++.......+++||||
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~-----~~g~~~-----~~i~~~f~~a~~~~p~vl~iDE 578 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM-----WFGESE-----ANVREIFDKARQAAPCVLFFDE 578 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSSTTC-----CTTTSS-----HHHHHHHHHHHHHCSBCCCCSS
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh---CCCEEEEechHhhhh-----hcCccH-----HHHHHHHHHHHhcCCeEEEEEC
Confidence 369999999999999999999998 567777777665432 111110 1123455555555558999999
Q ss_pred cccc--------------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHH
Q 047225 98 IEKA--------------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEEL 163 (287)
Q Consensus 98 id~~--------------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (287)
+|.+ ...+++.|+..++... ...+++||+|||.+.
T Consensus 579 id~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~---------~~~~v~vI~tTN~~~---------------------- 627 (806)
T 1ypw_A 579 LDSIAKARGGNIGDGGGAADRVINQILTEMDGMS---------TKKNVFIIGATNRPD---------------------- 627 (806)
T ss_dssp HHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---------------CCBCCCCCBSCG----------------------
T ss_pred hhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc---------ccCCeEEEEecCCcc----------------------
Confidence 9975 2345566666666421 123568899999763
Q ss_pred HhcCChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHH
Q 047225 164 RRRFRPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGR 241 (287)
Q Consensus 164 ~~~~~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~ 241 (287)
.+++++++ ||+..+.+++|+.++..+|++.++.+.. +. .+..++.++.. ..+++.++++.++..
T Consensus 628 --~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~---------~~-~~~~l~~la~~--t~g~sgadi~~l~~~ 693 (806)
T 1ypw_A 628 --IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VA-KDVDLEFLAKM--TNGFSGADLTEICQR 693 (806)
T ss_dssp --GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC--------------CCCCSCSCGG--GSSSCCHHHHHHHHH
T ss_pred --cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC---------CC-cccCHHHHHHh--ccccCHHHHHHHHHH
Confidence 35688888 9999999999999999999977664321 11 11112223332 234566888888888
Q ss_pred HHHHHHHH
Q 047225 242 LLEDNLAE 249 (287)
Q Consensus 242 ~~~~~~~~ 249 (287)
+...++.+
T Consensus 694 a~~~a~~~ 701 (806)
T 1ypw_A 694 ACKLAIRE 701 (806)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHHH
Confidence 77766543
No 82
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.42 E-value=3.5e-13 Score=130.11 Aligned_cols=153 Identities=17% Similarity=0.245 Sum_probs=96.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC-------CCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS-------KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPH 90 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (287)
++++|+||||||||++|+.+|+.+... +..++.+++.. ...| .. ......+++.+.....
T Consensus 202 ~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~--------~~~G----~~-e~~l~~~~~~~~~~~~ 268 (758)
T 3pxi_A 202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT--------KYRG----EF-EDRLKKVMDEIRQAGN 268 (758)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------------------CTTHHHHHHHHHTCCC
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc--------cccc----hH-HHHHHHHHHHHHhcCC
Confidence 379999999999999999999997332 33444444400 0000 00 0012355666666666
Q ss_pred EEEEEcCcccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 91 SVILFDEIEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 91 ~il~iDeid~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
.||||| ...+.++.|++.++.+ .+.+|+++|+....- ...++++
T Consensus 269 ~iLfiD----~~~~~~~~L~~~l~~~-------------~v~~I~at~~~~~~~-------------------~~~~d~a 312 (758)
T 3pxi_A 269 IILFID----AAIDASNILKPSLARG-------------ELQCIGATTLDEYRK-------------------YIEKDAA 312 (758)
T ss_dssp CEEEEC----C--------CCCTTSS-------------SCEEEEECCTTTTHH-------------------HHTTCSH
T ss_pred EEEEEc----CchhHHHHHHHHHhcC-------------CEEEEeCCChHHHHH-------------------HhhccHH
Confidence 899999 5556778888888754 456888888764210 0134789
Q ss_pred HHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 171 l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
|.+|| ..+.|++|+.+++.+|+...+..+.. ...+.++++++..++..+
T Consensus 313 l~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~-----~~~~~i~~~al~~~~~~s 361 (758)
T 3pxi_A 313 LERRF-QPIQVDQPSVDESIQILQGLRDRYEA-----HHRVSITDDAIEAAVKLS 361 (758)
T ss_dssp HHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG-----GSSCSCCHHHHHHHHHHH
T ss_pred HHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHH-----hcCCCCCHHHHHHHHHHh
Confidence 99999 78999999999999999766543221 124678999999888753
No 83
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.42 E-value=9.6e-14 Score=147.35 Aligned_cols=200 Identities=18% Similarity=0.227 Sum_probs=130.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccch-hhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENG-GQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~il~iDe 97 (287)
+++|+||||||||.+++.....+. +.+++.++++...+...+...+....... .... +.+......+.+.|+||||
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~--~~~~~~infS~~Tta~~l~~~~e~~~e~~-~~~~~G~~~~p~~~Gk~~VlFiDD 1382 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFP--DFEVVSLNFSSATTPELLLKTFDHHCEYK-RTPSGETVLRPTQLGKWLVVFCDE 1382 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCT--TEEEEEECCCTTCCHHHHHHHHHHHEEEE-ECTTSCEEEEESSTTCEEEEEETT
T ss_pred cEEEECCCCCCHHHHHHHHHHhCC--CCceEEEEeeCCCCHHHHHHHHhhcceEE-eccCCCcccCCCcCCceEEEEecc
Confidence 599999999999988766555542 45678899988887654444332100000 0000 1111111223456999999
Q ss_pred cccccHH------HHHHHHHhhcCceeecCC-CceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChh
Q 047225 98 IEKAHRD------VLNVMLQLLDDGRVTDGK-GQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPE 170 (287)
Q Consensus 98 id~~~~~------~~~~L~~~l~~~~~~~~~-g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (287)
++...++ .++.|+++++.|.+++.. +..+...++.+|+|+||+..+. +..+++.
T Consensus 1383 iNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gG-------------------r~~l~~R 1443 (3245)
T 3vkg_A 1383 INLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAG-------------------RVQLTHR 1443 (3245)
T ss_dssp TTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTT-------------------CCCCCHH
T ss_pred cCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCC-------------------CccCCHH
Confidence 9977654 889999999998888764 6677788999999999875321 2357899
Q ss_pred HHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHH------------hccCCCCCchhHHHH
Q 047225 171 FLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIE------------EGYNPSYGARPLRRA 238 (287)
Q Consensus 171 l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~------------~~~~~~~~~r~l~~~ 238 (287)
|++|| ..+.+++|+.+++..|+..++.........- ..+.+.+++.... ...++-++.|++.++
T Consensus 1444 f~r~F-~vi~i~~ps~esL~~If~til~~~l~~~p~l---~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv 1519 (3245)
T 3vkg_A 1444 FLRHA-PILLVDFPSTSSLTQIYGTFNRALMKLLPNL---RSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRW 1519 (3245)
T ss_dssp HHTTC-CEEECCCCCHHHHHHHHHHHHHHHTTSCGGG---TTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHH
T ss_pred HHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHhhChHH---HHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHH
Confidence 99999 8899999999999999887765432110000 0011222222211 112456799999999
Q ss_pred HHHHHH
Q 047225 239 IGRLLE 244 (287)
Q Consensus 239 i~~~~~ 244 (287)
++.++.
T Consensus 1520 ~qGll~ 1525 (3245)
T 3vkg_A 1520 DRALLE 1525 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987665
No 84
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.41 E-value=9.5e-13 Score=127.19 Aligned_cols=158 Identities=18% Similarity=0.275 Sum_probs=104.1
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC-------CCceEEecccccccccchhhhhCCCCCCCcccc--hhhHHHHHHhC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS-------KEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFEN--GGQLTEAVRHR 88 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 88 (287)
++++|+||||||||++++.++..+... +..++.++++..... ..+.|..+ ...+++.+...
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~----------~~~~g~~e~~l~~~~~~~~~~ 277 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAG----------TKYRGDFEKRFKALLKQLEQD 277 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CC----------CCCSSCHHHHHHHHHHHHSSS
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhcc----------ccccchHHHHHHHHHHHHHhc
Confidence 379999999999999999999987322 223344444332210 01111111 12344455555
Q ss_pred CcEEEEEcCcccc---------cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHH
Q 047225 89 PHSVILFDEIEKA---------HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGV 159 (287)
Q Consensus 89 ~~~il~iDeid~~---------~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~ 159 (287)
...+|||||++.+ ..+..+.|.++++.+ ++.+|+++|+...
T Consensus 278 ~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~-------------~~~~I~at~~~~~----------------- 327 (758)
T 1r6b_X 278 TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-------------KIRVIGSTTYQEF----------------- 327 (758)
T ss_dssp SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSC-------------CCEEEEEECHHHH-----------------
T ss_pred CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCC-------------CeEEEEEeCchHH-----------------
Confidence 5689999999987 455666777777653 4468888875321
Q ss_pred HHHHHh--cCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhc
Q 047225 160 AEELRR--RFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEG 225 (287)
Q Consensus 160 ~~~~~~--~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~ 225 (287)
.+ ..+++|.+|| ..+.+++|+.++..+++...+..+.... .+.++++++..++..+
T Consensus 328 ----~~~~~~d~aL~~Rf-~~i~v~~p~~~e~~~il~~l~~~~~~~~-----~v~~~~~al~~~~~~s 385 (758)
T 1r6b_X 328 ----SNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHH-----DVRYTAKAVRAAVELA 385 (758)
T ss_dssp ----HCCCCCTTSSGGGE-EEEECCCCCHHHHHHHHHHHHHHHHHHH-----TCCCCHHHHHHHHHHH
T ss_pred ----hhhhhcCHHHHhCc-eEEEcCCCCHHHHHHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHh
Confidence 11 2357799999 5899999999999999988776654322 3568899999888654
No 85
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.40 E-value=5.4e-13 Score=106.01 Aligned_cols=126 Identities=21% Similarity=0.266 Sum_probs=79.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC-------CCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhC-Cc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG-------SKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHR-PH 90 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 90 (287)
+++|+||||||||++++.+++.+.. .+.+++.+++............. ......+...+... ..
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 116 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDF--------EERLKSILKEVQDAEGQ 116 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHH--------HHHHHHHHHHHHHTTTS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHH--------HHHHHHHHHHHHhcCCc
Confidence 6999999999999999999998844 24566666665433211000000 00012233333333 45
Q ss_pred EEEEEcCccccc---------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHH
Q 047225 91 SVILFDEIEKAH---------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAE 161 (287)
Q Consensus 91 ~il~iDeid~~~---------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~ 161 (287)
.+|+|||++.+. .++++.|..+++.+ ++.+|+++|......
T Consensus 117 ~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~-------------~~~ii~~~~~~~~~~----------------- 166 (187)
T 2p65_A 117 VVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARG-------------ELRCIGATTVSEYRQ----------------- 166 (187)
T ss_dssp EEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTT-------------CSCEEEEECHHHHHH-----------------
T ss_pred eEEEEeCHHHhcccccccccchHHHHHHHHHHhcC-------------CeeEEEecCHHHHHH-----------------
Confidence 799999999986 56677787777652 346888887542110
Q ss_pred HHHhcCChhHHhccCceEEeCCCC
Q 047225 162 ELRRRFRPEFLNRIDEVIVFRQLN 185 (287)
Q Consensus 162 ~~~~~~~~~l~~r~~~~i~~~~~~ 185 (287)
...+.+++.+||. .+.+++|+
T Consensus 167 --~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 167 --FIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp --HTTTCHHHHHHEE-EEECCSCC
T ss_pred --HHhccHHHHHhcC-cccCCCCC
Confidence 0134689999994 69998885
No 86
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.36 E-value=3.5e-12 Score=114.08 Aligned_cols=179 Identities=16% Similarity=0.124 Sum_probs=103.3
Q ss_pred EEEEeccCCChHHHHHHHH-HHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANAL-AFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~l-a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
|++|.|+||| ||.+++.+ +..+.. ..++...++.... .... +..+ .| . ..-...+...+.+++|+||
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR--~~ft~g~~ss~~g-Lt~s--~r~~---tG-~--~~~~G~l~LAdgGvl~lDE 308 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPR--GVYVDLRRTELTD-LTAV--LKED---RG-W--ALRAGAAVLADGGILAVDH 308 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSS--EEEEEGGGCCHHH-HSEE--EEES---SS-E--EEEECHHHHTTTSEEEEEC
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCC--eEEecCCCCCccC-ceEE--EEcC---CC-c--ccCCCeeEEcCCCeeehHh
Confidence 7999999999 99999999 766521 1111111111000 0000 1111 11 1 0112233334557999999
Q ss_pred cccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhccCc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRIDE 177 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 177 (287)
++++++..+.+|++.|+++.++.. |. .-..++.+|+|+|+.. .... .... -...+++++++|||.
T Consensus 309 In~~~~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA~NP~~-~yd~-----~~s~-------~~~~Lp~alLDRFDL 373 (506)
T 3f8t_A 309 LEGAPEPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAAINPGE-QWPS-----DPPI-------ARIDLDQDFLSHFDL 373 (506)
T ss_dssp CTTCCHHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEEECCCC---CC-----SCGG-------GGCCSCHHHHTTCSE
T ss_pred hhhCCHHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEEeCccc-ccCC-----CCCc-------cccCCChHHhhheee
Confidence 999999999999999999999886 66 3335899999999975 2100 0000 023789999999986
Q ss_pred e-EEeCCCCHHHHHH-----HHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHh
Q 047225 178 V-IVFRQLNKMQLME-----IVDIMLKEIYERLEAKNMELTVTHTFKKKLIEE 224 (287)
Q Consensus 178 ~-i~~~~~~~~~~~~-----il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~ 224 (287)
. +....++.++-.+ +-...+.++....+.....+.+++++.++|...
T Consensus 374 i~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 374 IAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp EEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred EEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 5 4455555433211 112223333333331233578999999988753
No 87
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.34 E-value=2.2e-11 Score=128.93 Aligned_cols=135 Identities=19% Similarity=0.230 Sum_probs=104.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+.++.||+|||||++++.+|+.+ +.+++.++|++..+...+. +.+..++..+ .+++|||+
T Consensus 647 ~~~l~GpaGtGKTe~vk~LA~~l---g~~~v~~nc~e~ld~~~lg---------------~~~~g~~~~G--aw~~~DE~ 706 (2695)
T 4akg_A 647 GGCFFGPAGTGKTETVKAFGQNL---GRVVVVFNCDDSFDYQVLS---------------RLLVGITQIG--AWGCFDEF 706 (2695)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT---TCCCEEEETTSSCCHHHHH---------------HHHHHHHHHT--CEEEEETT
T ss_pred CCcccCCCCCCcHHHHHHHHHHh---CCcEEEEECCCCCChhHhh---------------HHHHHHHhcC--CEeeehhh
Confidence 47899999999999999999999 8899999999877653331 2344555555 49999999
Q ss_pred ccccHHHHHHH-------HHhhcCceeecC-CCceeec-cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 99 EKAHRDVLNVM-------LQLLDDGRVTDG-KGQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 99 d~~~~~~~~~L-------~~~l~~~~~~~~-~g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
|+++++++..+ ...+.++..... .|..+.. +.+.+++|+||+..+. ..++.
T Consensus 707 nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~--------------------~eLP~ 766 (2695)
T 4akg_A 707 NRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGR--------------------SELPE 766 (2695)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSS--------------------CCCCH
T ss_pred hhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCc--------------------ccccH
Confidence 99999998887 344444432222 4777776 4789999999975432 35788
Q ss_pred hHHhccCceEEeCCCCHHHHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLNKMQLMEIVD 194 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~~~~~~~il~ 194 (287)
+|.+|| ..+.+..|+.+.+.+|+.
T Consensus 767 ~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 767 NLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp HHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred HHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 999999 889999999999888863
No 88
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.26 E-value=1.4e-10 Score=123.70 Aligned_cols=173 Identities=15% Similarity=0.179 Sum_probs=120.0
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCcc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEIE 99 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDeid 99 (287)
..+.||+|||||.+++.||+.+ +..++.++|++..+..... +.+...+..+. +.+|||++
T Consensus 607 g~~~GPaGtGKTet~k~La~~l---gr~~~vfnC~~~~d~~~~g---------------~i~~G~~~~Ga--W~cfDEfN 666 (3245)
T 3vkg_A 607 GNPFGPAGTGKTETVKALGSQL---GRFVLVFCCDEGFDLQAMS---------------RIFVGLCQCGA--WGCFDEFN 666 (3245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT---TCCEEEEECSSCCCHHHHH---------------HHHHHHHHHTC--EEEEETTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHh---CCeEEEEeCCCCCCHHHHH---------------HHHhhHhhcCc--EEEehhhh
Confidence 5689999999999999999999 7899999998877653222 23345555554 89999999
Q ss_pred cccHHHHHHHHHhhc---------CceeecCCCceeec-cceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCCh
Q 047225 100 KAHRDVLNVMLQLLD---------DGRVTDGKGQTVDL-KNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRP 169 (287)
Q Consensus 100 ~~~~~~~~~L~~~l~---------~~~~~~~~g~~i~~-~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (287)
+++.+++..+.+.+. ...+...+|..+.+ +.+.+++|+||+..+. ..++.
T Consensus 667 rl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr--------------------~eLP~ 726 (3245)
T 3vkg_A 667 RLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGR--------------------SNLPD 726 (3245)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGC--------------------CCSCH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCc--------------------ccChH
Confidence 999999888776554 33454533777776 4789999999976543 35788
Q ss_pred hHHhccCceEEeCCCCHHHHHHHHHHHH-----HHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHH
Q 047225 170 EFLNRIDEVIVFRQLNKMQLMEIVDIML-----KEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIG 240 (287)
Q Consensus 170 ~l~~r~~~~i~~~~~~~~~~~~il~~~l-----~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~ 240 (287)
.|.++| ..|.++.|+.+.+.+|+.... ...+.++. --...+....+...++.+|+|.++.++.
T Consensus 727 nLk~lF-r~v~m~~Pd~~~i~ei~L~s~Gf~~a~~La~k~~-------~~~~l~~e~LS~Q~HYDfGLRalKsVL~ 794 (3245)
T 3vkg_A 727 NLKKLF-RSMAMIKPDREMIAQVMLYSQGFKTAEVLAGKIV-------PLFKLCQEQLSAQSHYDFGLRALKSVLV 794 (3245)
T ss_dssp HHHTTE-EEEECCSCCHHHHHHHHHHTTTCSCHHHHHHHHH-------HHHHHHHHSSCCCTTCCCSHHHHHHHHH
T ss_pred HHHhhc-EEEEEeCCCHHHHHHHHHHHcccchHHHHHHHHH-------HHHHHHHHHhCCCCCCCCChHHHHHHHH
Confidence 999999 889999999999999873321 11111111 0011222222334566788888888776
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.25 E-value=7.2e-11 Score=105.66 Aligned_cols=194 Identities=12% Similarity=0.084 Sum_probs=112.1
Q ss_pred EEEE--eccCCChHHHHHHHHHHHhcCC------CCceEEecccccccccc----hhhhhCCCCCCCcccc---hhhHHH
Q 047225 19 SFLF--TGPTGVGKTELANALAFEYFGS------KEAMVRIDMSEYMEKHT----VSKFFGSPPGYVGFEN---GGQLTE 83 (287)
Q Consensus 19 ~ill--~Gp~GtGKT~la~~la~~l~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~ 83 (287)
++++ +||+|+|||++++.+++.+... +..+++++|........ +...++......+... ...+..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~ 131 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVD 131 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHH
Confidence 6888 9999999999999999887321 35667888754432211 1122232211112111 122333
Q ss_pred HHH-hCCcEEEEEcCccccc------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHH
Q 047225 84 AVR-HRPHSVILFDEIEKAH------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQME 156 (287)
Q Consensus 84 ~~~-~~~~~il~iDeid~~~------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~ 156 (287)
.+. .....+|+|||++.+. .+.+..|.+.+..... .+. ..++.+|++++.... .
T Consensus 132 ~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~---~~~---~~~v~lI~~~~~~~~-------------~ 192 (412)
T 1w5s_A 132 NLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS---RDG---VNRIGFLLVASDVRA-------------L 192 (412)
T ss_dssp HHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC---TTS---CCBEEEEEEEEETHH-------------H
T ss_pred HHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc---CCC---CceEEEEEEeccccH-------------H
Confidence 333 2445799999999875 3666666666653210 010 024567777764311 0
Q ss_pred HHHHHHHHhcCChhHHhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCC---CCch
Q 047225 157 RGVAEELRRRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPS---YGAR 233 (287)
Q Consensus 157 ~~~~~~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~---~~~r 233 (287)
..+. .. .+.+.+++...+.++|++.++..+++...+... +....++++++..++..+.... ..++
T Consensus 193 ~~l~----~~-~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~~G~p~ 260 (412)
T 1w5s_A 193 SYMR----EK-IPQVESQIGFKLHLPAYKSRELYTILEQRAELG-------LRDTVWEPRHLELISDVYGEDKGGDGSAR 260 (412)
T ss_dssp HHHH----HH-CHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH-------BCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred HHHh----hh-cchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc-------CCCCCCChHHHHHHHHHHHHhccCCCcHH
Confidence 1110 00 045667776669999999999999997665432 1112478889999988765322 4556
Q ss_pred hHHHHHHHHH
Q 047225 234 PLRRAIGRLL 243 (287)
Q Consensus 234 ~l~~~i~~~~ 243 (287)
.+...+..++
T Consensus 261 ~~~~l~~~a~ 270 (412)
T 1w5s_A 261 RAIVALKMAC 270 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655443
No 90
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.24 E-value=4.5e-11 Score=115.79 Aligned_cols=171 Identities=22% Similarity=0.292 Sum_probs=109.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||+++++++..+ +.+++.+++.+..... .+... .....+++.......+++|+||+
T Consensus 240 ~vLL~Gp~GtGKTtLarala~~l---~~~~i~v~~~~l~~~~---------~g~~~-~~l~~vf~~a~~~~p~il~iDEi 306 (806)
T 1ypw_A 240 GILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSKL---------AGESE-SNLRKAFEEAEKNAPAIIFIDEL 306 (806)
T ss_dssp EEEECSCTTSSHHHHHHHHHHTT---TCEEEEEEHHHHSSSS---------TTHHH-HHHHHHHHHHHHHCSEEEEEESG
T ss_pred eEEEECcCCCCHHHHHHHHHHHc---CCcEEEEEchHhhhhh---------hhhHH-HHHHHHHHHHHhcCCcEEEeccH
Confidence 69999999999999999999988 6677888886544221 00000 01123444444445589999999
Q ss_pred cccc-----------HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcC
Q 047225 99 EKAH-----------RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRF 167 (287)
Q Consensus 99 d~~~-----------~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (287)
+.+. ..++..|+.+++...- ..++++|+++|... .+
T Consensus 307 d~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~---------~~~v~vI~atn~~~------------------------~l 353 (806)
T 1ypw_A 307 DAIAPKREKTHGEVERRIVSQLLTLMDGLKQ---------RAHVIVMAATNRPN------------------------SI 353 (806)
T ss_dssp GGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT---------TSCCEEEEECSCTT------------------------TS
T ss_pred HHhhhccccccchHHHHHHHHHHHHhhhhcc---------cccEEEecccCCch------------------------hc
Confidence 7543 3466778887774210 13567888888753 23
Q ss_pred ChhHHh--ccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHH
Q 047225 168 RPEFLN--RIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLED 245 (287)
Q Consensus 168 ~~~l~~--r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~ 245 (287)
.+.+.+ ||+..+.++.|+.++..+++...+.+. .+ ..+..+..++.. ...+..+++...+..+...
T Consensus 354 d~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~---------~l-~~~~~l~~la~~--t~g~~g~dl~~l~~ea~~~ 421 (806)
T 1ypw_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---------KL-ADDVDLEQVANE--THGHVGADLAALCSEAALQ 421 (806)
T ss_dssp CTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS---------CC-CTTCCTHHHHHS--CSSCCHHHHHHHHHHHHHH
T ss_pred CHHHhcccccccccccCCCCHHHHHHHHHHHHhcC---------CC-cccchhHHHHHh--hcCcchHHHHHHHHHHHHH
Confidence 566665 898889999999999999986554321 11 122234455543 2344556777776666554
Q ss_pred HH
Q 047225 246 NL 247 (287)
Q Consensus 246 ~~ 247 (287)
++
T Consensus 422 a~ 423 (806)
T 1ypw_A 422 AI 423 (806)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 91
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.13 E-value=1.3e-10 Score=92.28 Aligned_cols=104 Identities=16% Similarity=0.195 Sum_probs=66.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc-CCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF-GSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+++|+||+|||||+++++++..+. ..+..++.+++.+..... ...+... ....+...+... .+++|||
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~--~llilDE 108 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL--KHLMDEG-------KDTKFLKTVLNS--PVLVLDD 108 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH--HHHHHHT-------CCSHHHHHHHTC--SEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH--HHHhcCc-------hHHHHHHHhcCC--CEEEEeC
Confidence 699999999999999999999884 334455666665543321 1111000 001344444444 4999999
Q ss_pred cc--cccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchh
Q 047225 98 IE--KAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSV 143 (287)
Q Consensus 98 id--~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~ 143 (287)
++ .+++.....|..+++... ..+..+|++||.....
T Consensus 109 ~~~~~~~~~~~~~l~~ll~~~~----------~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 109 LGSERLSDWQRELISYIITYRY----------NNLKSTIITTNYSLQR 146 (180)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHH----------HTTCEEEEECCCCSCC
T ss_pred CCCCcCCHHHHHHHHHHHHHHH----------HcCCCEEEEcCCChhH
Confidence 98 677877788888776421 0134688899887543
No 92
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.11 E-value=1.5e-10 Score=89.10 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=62.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||+|+|||+++++++..+...+...++++..+.... . .+.. ..+++|||+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------------------~---~~~~--~~lLilDE~ 92 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------------------D---AAFE--AEYLAVDQV 92 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------------------G---GGGG--CSEEEEEST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------------------H---HHhC--CCEEEEeCc
Confidence 69999999999999999999988655555666666543321 0 1112 259999999
Q ss_pred ccccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchh
Q 047225 99 EKAHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSV 143 (287)
Q Consensus 99 d~~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~ 143 (287)
+.++...+..|+++++..... ....+|+++|..+..
T Consensus 93 ~~~~~~~~~~l~~li~~~~~~---------g~~~iiits~~~p~~ 128 (149)
T 2kjq_A 93 EKLGNEEQALLFSIFNRFRNS---------GKGFLLLGSEYTPQQ 128 (149)
T ss_dssp TCCCSHHHHHHHHHHHHHHHH---------TCCEEEEEESSCTTT
T ss_pred cccChHHHHHHHHHHHHHHHc---------CCcEEEEECCCCHHH
Confidence 998776688888887642110 122377788865543
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.98 E-value=7.3e-09 Score=90.62 Aligned_cols=165 Identities=14% Similarity=0.099 Sum_probs=108.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCC-CceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHh----CCcEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSK-EAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRH----RPHSV 92 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i 92 (287)
+.++|+||+|+||++.++.+++.+...+ .+...+.... . .....+.+.+.. +++.+
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~----------------~~~~~l~~~~~~~plf~~~kv 79 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---N----------------TDWNAIFSLCQAMSLFASRQT 79 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---T----------------CCHHHHHHHHHHHHHCCSCEE
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---C----------------CCHHHHHHHhcCcCCccCCeE
Confidence 3699999999999999999998773211 1211111110 0 011233333322 45679
Q ss_pred EEEcCccc-ccHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhH
Q 047225 93 ILFDEIEK-AHRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEF 171 (287)
Q Consensus 93 l~iDeid~-~~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 171 (287)
++|||++. ++...++.|++.+++. .+++++|++++.....-. ...+.+.+
T Consensus 80 vii~~~~~kl~~~~~~aLl~~le~p-----------~~~~~~il~~~~~~~~~~------------------~~k~~~~i 130 (343)
T 1jr3_D 80 LLLLLPENGPNAAINEQLLTLTGLL-----------HDDLLLIVRGNKLSKAQE------------------NAAWFTAL 130 (343)
T ss_dssp EEEECCSSCCCTTHHHHHHHHHTTC-----------BTTEEEEEEESCCCTTTT------------------TSHHHHHH
T ss_pred EEEECCCCCCChHHHHHHHHHHhcC-----------CCCeEEEEEcCCCChhhH------------------hhHHHHHH
Confidence 99999999 9999999999999862 235566666543211000 01234677
Q ss_pred HhccCceEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCcEEEeChhHHHHHHHhccCCCCCchhHHHHHHHHH
Q 047225 172 LNRIDEVIVFRQLNKMQLMEIVDIMLKEIYERLEAKNMELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLL 243 (287)
Q Consensus 172 ~~r~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~ 243 (287)
.+|+ ..+.|.|++..++..++...+.+. ++.+++++++.++.... .+.+.+.+.++++.
T Consensus 131 ~sr~-~~~~~~~l~~~~l~~~l~~~~~~~---------g~~i~~~a~~~l~~~~~---gdl~~~~~elekl~ 189 (343)
T 1jr3_D 131 ANRS-VQVTCQTPEQAQLPRWVAARAKQL---------NLELDDAANQVLCYCYE---GNLLALAQALERLS 189 (343)
T ss_dssp TTTC-EEEEECCCCTTHHHHHHHHHHHHT---------TCEECHHHHHHHHHSST---TCHHHHHHHHHHHH
T ss_pred HhCc-eEEEeeCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHhc---hHHHHHHHHHHHHH
Confidence 8999 899999999999999997766532 46899999999998642 34556655555443
No 94
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.95 E-value=2.4e-10 Score=92.38 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=62.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||+|||||+++++++..+...+.+++.+++.++.... ...+.. + ....+.+.+.... +|+|||+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~-----~~~~~~~~~~~~~--~lilDei 124 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL--KHSLQD--Q-----TMNEKLDYIKKVP--VLMLDDL 124 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHH--HHC-----C-----CCHHHHHHHHHSS--EEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHH--HHHhcc--c-----hHHHHHHHhcCCC--EEEEcCC
Confidence 699999999999999999999987666777778776543221 111100 0 0123445555554 9999999
Q ss_pred ccccHH--HHHHH-HHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 99 EKAHRD--VLNVM-LQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 99 d~~~~~--~~~~L-~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
+..... .+..+ ..+++.+. ..+..+|+|||.....+
T Consensus 125 ~~~~~~~~~~~~ll~~~l~~~~----------~~~~~~i~tsn~~~~~l 163 (202)
T 2w58_A 125 GAEAMSSWVRDDVFGPILQYRM----------FENLPTFFTSNFDMQQL 163 (202)
T ss_dssp CCC---CCGGGTTHHHHHHHHH----------HTTCCEEEEESSCHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHHH----------hCCCCEEEEcCCCHHHH
Confidence 764332 23322 33444311 01235888999875543
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.91 E-value=1.8e-09 Score=86.41 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=67.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDEI 98 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDei 98 (287)
+++|+||||||||+++.++++.+.+ .+..+..+. . ......+.. ..++++||+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g---~i~~fans~---s-------------------~f~l~~l~~--~kIiiLDEa 112 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG---AVISFVNST---S-------------------HFWLEPLTD--TKVAMLDDA 112 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC---EECCCCCSS---S-------------------CGGGGGGTT--CSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC---CeeeEEecc---c-------------------hhhhcccCC--CCEEEEECC
Confidence 6999999999999999999999832 221110000 0 000011111 238999999
Q ss_pred ccccHHH-HHHHHHhhcCceeecCC--CceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhcc
Q 047225 99 EKAHRDV-LNVMLQLLDDGRVTDGK--GQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRI 175 (287)
Q Consensus 99 d~~~~~~-~~~L~~~l~~~~~~~~~--g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 175 (287)
+....+. ...++.+++...+.... ..........+|+|||....... .+ +.|.||+
T Consensus 113 d~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~--------------------~~-~~L~SRi 171 (212)
T 1tue_A 113 TTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDN--------------------RW-PYLESRI 171 (212)
T ss_dssp CHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSS--------------------SC-HHHHTSC
T ss_pred CchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCccccc--------------------ch-hhhhhhE
Confidence 9654333 34677777764333211 11122233479999998644211 12 5788999
Q ss_pred CceEEeC
Q 047225 176 DEVIVFR 182 (287)
Q Consensus 176 ~~~i~~~ 182 (287)
..+.|+
T Consensus 172 -~~f~F~ 177 (212)
T 1tue_A 172 -TVFEFP 177 (212)
T ss_dssp -EEEECC
T ss_pred -EEEEcC
Confidence 777776
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.79 E-value=1.9e-09 Score=92.89 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=62.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhc-CCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYF-GSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 96 (287)
.+++|+||||||||++++++++.+. ..+.++.++++.++... +...... + ....+...+...+ +|+||
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~-----l~~~~~~--~--~~~~~~~~~~~~~--lLiiD 221 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID-----VKNAISN--G--SVKEEIDAVKNVP--VLILD 221 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH-----HHCCCC--------CCTTHHHHTSS--EEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH-----HHHHhcc--c--hHHHHHHHhcCCC--EEEEc
Confidence 3799999999999999999999886 66677777777654321 1111000 0 0012334444444 99999
Q ss_pred Cccccc--HHHHH-HHHHhhcCceeecCCCceeeccceEEEEeecCCchhh
Q 047225 97 EIEKAH--RDVLN-VMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVI 144 (287)
Q Consensus 97 eid~~~--~~~~~-~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~ 144 (287)
|++..+ ...++ .|..+++.+.. .+..+|+|||.+...+
T Consensus 222 dig~~~~~~~~~~~ll~~ll~~r~~----------~~~~~IitSN~~~~~l 262 (308)
T 2qgz_A 222 DIGAEQATSWVRDEVLQVILQYRML----------EELPTFFTSNYSFADL 262 (308)
T ss_dssp TCCC------CTTTTHHHHHHHHHH----------HTCCEEEEESSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH----------CCCcEEEECCCCHHHH
Confidence 996543 33333 23335553210 1235899999876544
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.78 E-value=5.6e-08 Score=84.63 Aligned_cols=145 Identities=17% Similarity=0.185 Sum_probs=83.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc------cccc----hhhhhCC-----------------CCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM------EKHT----VSKFFGS-----------------PPG 71 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~------~~~~----~~~~~~~-----------------~~~ 71 (287)
.++++||+|+|||++++.+++.. + .+++++.... .... +...++. ...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLE 107 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSC
T ss_pred eEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeec
Confidence 69999999999999999999886 2 6677775432 1110 1111110 000
Q ss_pred CCcccchhhHHHHHH----hCCcEEEEEcCcccccH-------HHHHHHHHhhcCceeecCCCceeeccceEEEEeecCC
Q 047225 72 YVGFENGGQLTEAVR----HRPHSVILFDEIEKAHR-------DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIG 140 (287)
Q Consensus 72 ~~~~~~~~~~~~~~~----~~~~~il~iDeid~~~~-------~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~ 140 (287)
. .......+...+. .....+|+|||++.++. +....|..+++.. +++.+|+++...
T Consensus 108 ~-~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~------------~~~~~il~g~~~ 174 (350)
T 2qen_A 108 P-RKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSL------------PNLKIILTGSEV 174 (350)
T ss_dssp G-GGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHC------------TTEEEEEEESSH
T ss_pred c-ccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhc------------CCeEEEEECCcH
Confidence 0 0011122333332 12257999999999763 6667777776641 245677776542
Q ss_pred chhhhhhccCCchHHHHHHHHHHH-hcCChhHHhccCceEEeCCCCHHHHHHHHHHHH
Q 047225 141 DSVIARESILGSDQMERGVAEELR-RRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIML 197 (287)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l 197 (287)
.. +...++ ......+..|....+.++|++.++..+++...+
T Consensus 175 ~~----------------l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 175 GL----------------LHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp HH----------------HHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred HH----------------HHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH
Confidence 10 000000 011233555665689999999999999886544
No 98
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.77 E-value=3.2e-08 Score=82.68 Aligned_cols=134 Identities=16% Similarity=0.230 Sum_probs=77.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+.++|+||||||||+++.+|++.+.. ...++.+. .. ..+.+ +. ...+++.||
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l----~G~vn~~~---~~------------------f~l~~-~~--~k~i~l~Ee 156 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPF----YGCVNWTN---EN------------------FPFND-CV--DKMVIWWEE 156 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSC----EEECCTTC---SS------------------CTTGG-GS--SCSEEEECS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhcc----cceeeccc---cc------------------ccccc-cc--ccEEEEecc
Confidence 46999999999999999999997521 11112211 00 01111 11 112555555
Q ss_pred cccccHHHHHHHHHhhcCceeecCC--CceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHHhcCChhHHhcc
Q 047225 98 IEKAHRDVLNVMLQLLDDGRVTDGK--GQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELRRRFRPEFLNRI 175 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~~~~~~~~~--g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ 175 (287)
.. +..+.+..++.+++.+...... +.........+|+|||.....+..++. . .....+.|.+|+
T Consensus 157 ~~-~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~---~----------s~~~~~~L~sR~ 222 (267)
T 1u0j_A 157 GK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNS---T----------TFEHQQPLQDRM 222 (267)
T ss_dssp CC-EETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTE---E----------ECTTHHHHHTTE
T ss_pred cc-chhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCc---c----------chhhhHHHhhhE
Confidence 55 4556777888888755544422 222344566899999985432110000 0 001125688999
Q ss_pred CceEEeC--------CCCHHHHHHHHH
Q 047225 176 DEVIVFR--------QLNKMQLMEIVD 194 (287)
Q Consensus 176 ~~~i~~~--------~~~~~~~~~il~ 194 (287)
..+.|+ +++.++.+..+.
T Consensus 223 -~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 223 -FKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp -EEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred -EEEECCCcCCcccCCCCHHHHHHHHH
Confidence 899998 899999888885
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.72 E-value=1.5e-07 Score=82.10 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=85.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc-----ccccc----hhh--------------hhCCCCC----
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY-----MEKHT----VSK--------------FFGSPPG---- 71 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-----~~~~~----~~~--------------~~~~~~~---- 71 (287)
.++++||+|+|||++++.+++... ...+++++... ..... +.. .++...+
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~ 108 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIM 108 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEEC
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEec
Confidence 699999999999999999999873 34677777643 11100 000 1111000
Q ss_pred CCc---------ccchhhHHHHHHhC--CcEEEEEcCcccccH----HHHHHHHHhhcCceeecCCCceeeccceEEEEe
Q 047225 72 YVG---------FENGGQLTEAVRHR--PHSVILFDEIEKAHR----DVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMT 136 (287)
Q Consensus 72 ~~~---------~~~~~~~~~~~~~~--~~~il~iDeid~~~~----~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t 136 (287)
..+ ......+...+... ...+|+|||++.++. ++...|..+++.. ++..+|++
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~i~~ 176 (357)
T 2fna_A 109 GNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNL------------KRIKFIMS 176 (357)
T ss_dssp SSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC------------TTEEEEEE
T ss_pred ceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHHHHHcC------------CCeEEEEE
Confidence 000 11123455555542 257999999998754 4555666665531 24467777
Q ss_pred ecCCchhhhhhccCCchHHHHHHHHHHH-hcCChhHHhccCceEEeCCCCHHHHHHHHHHHHH
Q 047225 137 SNIGDSVIARESILGSDQMERGVAEELR-RRFRPEFLNRIDEVIVFRQLNKMQLMEIVDIMLK 198 (287)
Q Consensus 137 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~r~~~~i~~~~~~~~~~~~il~~~l~ 198 (287)
++.... +.+.+. ......+..|....+.++|++.++..+++...+.
T Consensus 177 g~~~~~----------------l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~ 223 (357)
T 2fna_A 177 GSEMGL----------------LYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQ 223 (357)
T ss_dssp ESSHHH----------------HHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHH
T ss_pred cCchHH----------------HHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHH
Confidence 764210 000000 0112335556657899999999999999976553
No 100
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.64 E-value=6.7e-08 Score=76.85 Aligned_cols=96 Identities=17% Similarity=0.152 Sum_probs=52.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccc--ccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYME--KHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 96 (287)
.++++||+|+||||++..++..+...+.....+....... ...+....|.............+.+.+. .+..+|+||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviID 83 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFID 83 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEEE
Confidence 5889999999999998666666533344444333221000 0011111111100011111122333222 245799999
Q ss_pred CcccccHHHHHHHHHhhcC
Q 047225 97 EIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~ 115 (287)
|++.+++++++.|..+.+.
T Consensus 84 E~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 84 EVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CGGGSCTTHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHHC
Confidence 9999988898988888875
No 101
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.47 E-value=8.8e-07 Score=72.39 Aligned_cols=98 Identities=15% Similarity=0.065 Sum_probs=60.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccc-ccchhhhhCCCCCCCcccchhhHHHHHHh----CCcEE
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYME-KHTVSKFFGSPPGYVGFENGGQLTEAVRH----RPHSV 92 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i 92 (287)
..++++||+|+||||++..++..+...+.....++...... ...+...+|.............+.+.+.. ....+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 46899999999999999888888855555666554332111 11122222321111112222345555554 34579
Q ss_pred EEEcCcccccHHHHHHHHHhhcC
Q 047225 93 ILFDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 93 l~iDeid~~~~~~~~~L~~~l~~ 115 (287)
|+|||++.++.++.+.+..+.+.
T Consensus 93 ViIDEaQ~l~~~~ve~l~~L~~~ 115 (223)
T 2b8t_A 93 IGIDEVQFFDDRICEVANILAEN 115 (223)
T ss_dssp EEECSGGGSCTHHHHHHHHHHHT
T ss_pred EEEecCccCcHHHHHHHHHHHhC
Confidence 99999999988888877776664
No 102
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.45 E-value=7e-07 Score=71.75 Aligned_cols=131 Identities=15% Similarity=0.101 Sum_probs=70.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc-----CCC-CceEEecccccccccc--hhhhhCCCCCCCccc-chhhHHHHH--Hh
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF-----GSK-EAMVRIDMSEYMEKHT--VSKFFGSPPGYVGFE-NGGQLTEAV--RH 87 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~-----~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~--~~ 87 (287)
..+++|+||||||+.+..+..... ..+ .++++.++.+...... ...-+ ......... ....+.+++ ..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAK-KLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTT-TCSSCCSSCEEGGGHHHHTTSGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhh-hccccCcccccHHHHHHHhhccc
Confidence 588999999999999887655432 234 5555566554432111 00000 000000000 112344442 34
Q ss_pred CCcEEEEEcCcccc--cH-HHHH--HHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHH
Q 047225 88 RPHSVILFDEIEKA--HR-DVLN--VMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEE 162 (287)
Q Consensus 88 ~~~~il~iDeid~~--~~-~~~~--~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
+...+|+|||++.+ +. ...+ .++..++..+ .....+|+++++. .
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r----------~~~~~iil~tq~~-~-------------------- 134 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR----------HQGIDIFVLTQGP-K-------------------- 134 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT----------TTTCEEEEEESCG-G--------------------
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcC----------cCCeEEEEECCCH-H--------------------
Confidence 44579999999987 21 1111 2333333321 0133577778773 2
Q ss_pred HHhcCChhHHhccCceEEeCCC
Q 047225 163 LRRRFRPEFLNRIDEVIVFRQL 184 (287)
Q Consensus 163 ~~~~~~~~l~~r~~~~i~~~~~ 184 (287)
.+..++.+|+...+.+.++
T Consensus 135 ---~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 135 ---LLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp ---GBCHHHHTTEEEEEEEEEC
T ss_pred ---HHhHHHHHHhheEEEEcCc
Confidence 4567789999878888774
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.33 E-value=3.9e-06 Score=66.16 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||+|+||||+++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 104
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.23 E-value=2.8e-06 Score=72.78 Aligned_cols=70 Identities=19% Similarity=0.119 Sum_probs=40.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc--cccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM--SEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 96 (287)
.++|+||||||||+++..++... +.+..+++. .+..+... .........+.+.+...+ +|+||
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~---G~~VlyIs~~~eE~v~~~~----------~~le~~l~~i~~~l~~~~--LLVID 189 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEAL---GGKDKYATVRFGEPLSGYN----------TDFNVFVDDIARAMLQHR--VIVID 189 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHH---HTTSCCEEEEBSCSSTTCB----------CCHHHHHHHHHHHHHHCS--EEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhC---CCCEEEEEecchhhhhhhh----------cCHHHHHHHHHHHHhhCC--EEEEe
Confidence 47999999999999999999872 233333333 22110000 000000123445565555 99999
Q ss_pred CcccccH
Q 047225 97 EIEKAHR 103 (287)
Q Consensus 97 eid~~~~ 103 (287)
+++.+..
T Consensus 190 sI~aL~~ 196 (331)
T 2vhj_A 190 SLKNVIG 196 (331)
T ss_dssp CCTTTC-
T ss_pred ccccccc
Confidence 9997643
No 105
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.20 E-value=1.2e-05 Score=65.36 Aligned_cols=149 Identities=18% Similarity=0.179 Sum_probs=80.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCC---CC---CCcccch-hhHHHHHHhCCc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSP---PG---YVGFENG-GQLTEAVRHRPH 90 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~-~~~~~~~~~~~~ 90 (287)
.++++.|++|+|||+++-.++..+...+.....++.............-+.. .. +.+.... ..+...+... +
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~-p 85 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAA-P 85 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHC-C
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhcC-C
Confidence 3699999999999999999998886556666666664432221111111111 01 1111111 2344444443 4
Q ss_pred EEEEEcCcccccHH------HHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHH---
Q 047225 91 SVILFDEIEKAHRD------VLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAE--- 161 (287)
Q Consensus 91 ~il~iDeid~~~~~------~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~--- 161 (287)
.++++||+-..+.. ....+...++. .+-++.|+|.... +++.+.+..
T Consensus 86 dlvIVDElG~~~~~~~r~~~~~qDV~~~l~s--------------gidVitT~Nlqh~----------esl~d~v~~itg 141 (228)
T 2r8r_A 86 SLVLVDELAHTNAPGSRHTKRWQDIQELLAA--------------GIDVYTTVNVQHL----------ESLNDQVRGITG 141 (228)
T ss_dssp SEEEESCTTCBCCTTCSSSBHHHHHHHHHHT--------------TCEEEEEEEGGGB----------GGGHHHHHHHHS
T ss_pred CEEEEeCCCCCCcccchhHHHHHHHHHHHcC--------------CCCEEEEcccccc----------ccHHHHHHHHcC
Confidence 79999998754211 22222334443 2247888886432 122222221
Q ss_pred -HHHhcCChhHHhccCceEEeCCCCHHHHHHH
Q 047225 162 -ELRRRFRPEFLNRIDEVIVFRQLNKMQLMEI 192 (287)
Q Consensus 162 -~~~~~~~~~l~~r~~~~i~~~~~~~~~~~~i 192 (287)
..++.++..++++.+ .|.+-.++++++.+-
T Consensus 142 ~~v~e~vpd~~~~~a~-~v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 142 VQVRETLPDWVLQEAF-DLVLIDLPPRELLER 172 (228)
T ss_dssp CCCCSCBCHHHHHTCS-EEEEBCCCHHHHHHH
T ss_pred CCcCCcCccHHHhhCC-eEEEecCCHHHHHHH
Confidence 223567778888884 466666666664443
No 106
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=98.18 E-value=4.5e-06 Score=66.56 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=56.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccc--ccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYME--KHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFD 96 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iD 96 (287)
..+++||.|+|||+.+-.++..+...+.....+....... ...+...+|.............+.+.+.. +..+|+||
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~-~~dvViID 88 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE-DTEVIAID 88 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT-TCSEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc-cCCEEEEE
Confidence 6899999999999988888888755555555554221111 11111112211111111112234443332 35699999
Q ss_pred CcccccHHHHHHHHHhhcC
Q 047225 97 EIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 97 eid~~~~~~~~~L~~~l~~ 115 (287)
|++.++++.++.+..+.+.
T Consensus 89 Eaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 89 EVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp SGGGSCTHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999988888888777664
No 107
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.07 E-value=7.4e-06 Score=71.74 Aligned_cols=97 Identities=23% Similarity=0.330 Sum_probs=55.6
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCC-CCceEEe-cccccccccchhhhhCC-CCCCCcccchhhHHHHHHhCCcEE
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGS-KEAMVRI-DMSEYMEKHTVSKFFGS-PPGYVGFENGGQLTEAVRHRPHSV 92 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i 92 (287)
+.+.++++||+|+||||+.++++..+... +..++.+ +..++...... ..+.. ..+.........+..++...| .+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~-~~v~q~~~~~~~~~~~~~La~aL~~~P-dv 199 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK-CLVNQREVHRDTLGFSEALRSALREDP-DI 199 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-SEEEEEEBTTTBSCHHHHHHHHTTSCC-SE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-cceeeeeeccccCCHHHHHHHHhhhCc-CE
Confidence 33579999999999999999999988543 3344333 22222111000 00000 000011111234555555555 79
Q ss_pred EEEcCcccccHHHHHHHHHhhcCc
Q 047225 93 ILFDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 93 l~iDeid~~~~~~~~~L~~~l~~~ 116 (287)
+++||.- +.+....+.++.+.|
T Consensus 200 illDEp~--d~e~~~~~~~~~~~G 221 (356)
T 3jvv_A 200 ILVGEMR--DLETIRLALTAAETG 221 (356)
T ss_dssp EEESCCC--SHHHHHHHHHHHHTT
T ss_pred EecCCCC--CHHHHHHHHHHHhcC
Confidence 9999997 677777777777664
No 108
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.05 E-value=1.4e-05 Score=64.43 Aligned_cols=99 Identities=15% Similarity=0.051 Sum_probs=55.5
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccc--ccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEE
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYME--KHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVI 93 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il 93 (287)
+....+++||.|+|||+.+-.++......+...+.+....... ...+...+|.............+.+.+. .+..+|
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~-~~~dvV 105 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT-EEMDVI 105 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCC-SSCCEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHh-cCCCEE
Confidence 3335789999999999988888887755566666555332111 1122222222211111122223333332 235799
Q ss_pred EEcCcccccHHHHHHHHHhhcC
Q 047225 94 LFDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 94 ~iDeid~~~~~~~~~L~~~l~~ 115 (287)
+|||+..++++.++.|..+.+.
T Consensus 106 iIDEaQF~~~~~V~~l~~l~~~ 127 (214)
T 2j9r_A 106 AIDEVQFFDGDIVEVVQVLANR 127 (214)
T ss_dssp EECCGGGSCTTHHHHHHHHHHT
T ss_pred EEECcccCCHHHHHHHHHHhhC
Confidence 9999999998888777776664
No 109
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.92 E-value=2.8e-05 Score=61.68 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=55.0
Q ss_pred EEEEeccCCChHH-HHHHHHHHHhcCCCCceEEeccc---ccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 19 SFLFTGPTGVGKT-ELANALAFEYFGSKEAMVRIDMS---EYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 19 ~ill~Gp~GtGKT-~la~~la~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
-.+++||.|+||| .|.+.+.+.... +..+..+... .+. . .+...+|.............+.+..... .+|+
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~-~-~i~S~~g~~~~A~~~~~~~d~~~~~~~~--DvIl 96 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYS-S-SFCTHDRNTMEALPACLLRDVAQEALGV--AVIG 96 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGG-G-SCCHHHHHHSEEEEESSGGGGHHHHHTC--SEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccch-h-hhhhccCCcccceecCCHHHHHHhccCC--CEEE
Confidence 5899999999999 788888877643 4566666543 222 1 1221111110001112233455555443 5999
Q ss_pred EcCcccccHHHHHHHHHhhcCc
Q 047225 95 FDEIEKAHRDVLNVMLQLLDDG 116 (287)
Q Consensus 95 iDeid~~~~~~~~~L~~~l~~~ 116 (287)
|||+..+ +++.+.+..+.+.|
T Consensus 97 IDEaQFf-k~~ve~~~~L~~~g 117 (195)
T 1w4r_A 97 IDEGQFF-PDIVEFCEAMANAG 117 (195)
T ss_dssp ESSGGGC-TTHHHHHHHHHHTT
T ss_pred EEchhhh-HHHHHHHHHHHHCC
Confidence 9999999 67777776676653
No 110
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.89 E-value=1.6e-05 Score=63.22 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=29.1
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEec
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRID 52 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 52 (287)
+.+++++++|.||||+|-.++....+.+.++..+.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 46999999999999999999998866676666554
No 111
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.83 E-value=3e-05 Score=72.28 Aligned_cols=90 Identities=19% Similarity=0.258 Sum_probs=54.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccc----------ccchhhhhCCCCCCCcccchhhHHHHHHhC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYME----------KHTVSKFFGSPPGYVGFENGGQLTEAVRHR 88 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (287)
.+++.||||||||+++..+...+...+..+.....+.... ..++..+++..+. ++... .-...
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~--~~~~~-----~~~~~ 278 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQ--GFRHN-----HLEPA 278 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETT--EESCS-----SSSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcc--hhhhh-----hcccc
Confidence 6999999999999999999988755455554443221110 1122222221110 00000 00112
Q ss_pred CcEEEEEcCcccccHHHHHHHHHhhcC
Q 047225 89 PHSVILFDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 89 ~~~il~iDeid~~~~~~~~~L~~~l~~ 115 (287)
+..+|+|||+..++......|++.+..
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPP 305 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCT
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcC
Confidence 346999999999999988888877653
No 112
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.81 E-value=0.00037 Score=64.59 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=46.0
Q ss_pred EEEEEeccCCChHHHHHHHHHH----HhcCCCCceEEecccccc--cc----cchhhhhCCCCC---CCcccc------h
Q 047225 18 SSFLFTGPTGVGKTELANALAF----EYFGSKEAMVRIDMSEYM--EK----HTVSKFFGSPPG---YVGFEN------G 78 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~----~l~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~---~~~~~~------~ 78 (287)
..+.++|+.|+|||+||+.+++ .........+.++.+... +. ..+...++.... ...... .
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~ 232 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLK 232 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHH
Confidence 4799999999999999999996 332222223344444432 11 111222222211 001111 1
Q ss_pred hhHHHHHHhCCcEEEEEcCccccc
Q 047225 79 GQLTEAVRHRPHSVILFDEIEKAH 102 (287)
Q Consensus 79 ~~~~~~~~~~~~~il~iDeid~~~ 102 (287)
..+.+.+....+-+|+||+++...
T Consensus 233 ~~l~~~L~~~kr~LlVLDdv~~~~ 256 (549)
T 2a5y_B 233 RMICNALIDRPNTLFVFDDVVQEE 256 (549)
T ss_dssp HHHHHHHTTSTTEEEEEEEECCHH
T ss_pred HHHHHHHcCCCcEEEEEECCCCch
Confidence 234445555436899999999754
No 113
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.81 E-value=3.9e-05 Score=69.56 Aligned_cols=94 Identities=16% Similarity=0.250 Sum_probs=52.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCC-ceEEeccccccc----------ccchhhhhCCCCCCCcccchhhH--HHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKE-AMVRIDMSEYME----------KHTVSKFFGSPPGYVGFENGGQL--TEAV 85 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 85 (287)
++++.|+||||||+++..++..+...+. .+..+..+.... ..++..+++......+. ...+ ....
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~--~~~~~~~~~~ 124 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEE--NVLFEQKEVP 124 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSS--CEEEEECSCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccc--cchhcccccc
Confidence 6999999999999999999988854433 333332221110 01111122110000000 0000 0000
Q ss_pred HhCCcEEEEEcCcccccHHHHHHHHHhhc
Q 047225 86 RHRPHSVILFDEIEKAHRDVLNVMLQLLD 114 (287)
Q Consensus 86 ~~~~~~il~iDeid~~~~~~~~~L~~~l~ 114 (287)
......++++||+..++...+..|...+.
T Consensus 125 ~~~~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 125 DLAKCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp CCSSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred cccCCCEEEEECchhCCHHHHHHHHHhcc
Confidence 01234699999999999999999998886
No 114
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.77 E-value=7.3e-05 Score=62.54 Aligned_cols=93 Identities=25% Similarity=0.364 Sum_probs=50.4
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCC-CCceEEecc-cccccccc---h-hhhhCCCCCCCcccchhhHHHHHHhCC
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGS-KEAMVRIDM-SEYMEKHT---V-SKFFGSPPGYVGFENGGQLTEAVRHRP 89 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~-~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (287)
+...++|+||+|+||||+.+.++..+... ...+..... -++..... + ...++.. .......+..++...+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~----~~~l~~~la~aL~~~p 99 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGED----TKSFADALRAALREDP 99 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTT----BSCHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCC----HHHHHHHHHHHHhhCC
Confidence 33579999999999999999999987443 333333221 11111000 0 0011100 0111234556666654
Q ss_pred cEEEEEcCcccccHHHHHHHHHhhcC
Q 047225 90 HSVILFDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 90 ~~il~iDeid~~~~~~~~~L~~~l~~ 115 (287)
.++++||.. +++....+.+..+.
T Consensus 100 -~illlDEp~--D~~~~~~~l~~~~~ 122 (261)
T 2eyu_A 100 -DVIFVGEMR--DLETVETALRAAET 122 (261)
T ss_dssp -SEEEESCCC--SHHHHHHHHHHHHT
T ss_pred -CEEEeCCCC--CHHHHHHHHHHHcc
Confidence 699999997 55544444444443
No 115
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.73 E-value=7.2e-05 Score=60.82 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=27.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.++|+||+|+|||++++.++..+...+..+.+++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 689999999999999999997764434555555543
No 116
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.69 E-value=4.3e-05 Score=79.57 Aligned_cols=82 Identities=17% Similarity=0.130 Sum_probs=52.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCC-------CCCcccchhhHHHHHHhCCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPP-------GYVGFENGGQLTEAVRHRPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 91 (287)
+++|+||||||||++|.+++......+....++++........ ..-+|... ...+-.....+...+++....
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~ 1507 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1507 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC
Confidence 6999999999999999999988766677888888775443322 22222110 000001112233455556668
Q ss_pred EEEEcCcccc
Q 047225 92 VILFDEIEKA 101 (287)
Q Consensus 92 il~iDeid~~ 101 (287)
+|+||+++.+
T Consensus 1508 lVVIDsi~al 1517 (2050)
T 3cmu_A 1508 VIVVDSVAAL 1517 (2050)
T ss_dssp EEEESCGGGC
T ss_pred EEEEcChhHh
Confidence 9999999733
No 117
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.63 E-value=3.6e-05 Score=60.11 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=26.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.++|+|+||+||||+++.|++.+ +.+++.++..
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D 37 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD 37 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence 59999999999999999999998 3455544443
No 118
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.62 E-value=0.00016 Score=67.84 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+++.|+||||||+++..+...+.
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHH
Confidence 699999999999999888877663
No 119
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.61 E-value=0.00034 Score=62.67 Aligned_cols=94 Identities=13% Similarity=0.114 Sum_probs=55.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccccccc-----chhhhhCCC--CCCCcccchh---hHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKH-----TVSKFFGSP--PGYVGFENGG---QLTEAVRH 87 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~---~~~~~~~~ 87 (287)
..++++|++|+||||++..||..+...+.....+++..+.... ......+.+ ....+.+... .....+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~ 180 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKS 180 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHh
Confidence 3799999999999999999999987767777777776554321 111111111 0011111111 22334444
Q ss_pred CCcEEEEEcCccccc--HHHHHHHHH
Q 047225 88 RPHSVILFDEIEKAH--RDVLNVMLQ 111 (287)
Q Consensus 88 ~~~~il~iDeid~~~--~~~~~~L~~ 111 (287)
..+.+++||...+.+ ......+..
T Consensus 181 ~~~DvVIIDTaGrl~~d~~lm~el~~ 206 (443)
T 3dm5_A 181 KGVDIIIVDTAGRHKEDKALIEEMKQ 206 (443)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHH
T ss_pred CCCCEEEEECCCcccchHHHHHHHHH
Confidence 456799999987654 344444444
No 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.59 E-value=0.00013 Score=64.30 Aligned_cols=93 Identities=25% Similarity=0.356 Sum_probs=50.8
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCC-CCceEEecc-cccccccc---h-hhhhCCCCCCCcccchhhHHHHHHhCC
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGS-KEAMVRIDM-SEYMEKHT---V-SKFFGSPPGYVGFENGGQLTEAVRHRP 89 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~-~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (287)
+...++++||+|+||||+++.++..+... ...++.+.. .++..... + +..++. ........+...+...+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~----~~~~~~~~l~~~L~~~p 210 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGE----DTKSFADALRAALREDP 210 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTT----TBSCSHHHHHHHTTSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCC----CHHHHHHHHHHHhhhCc
Confidence 33579999999999999999999988543 344444332 11100000 0 000110 01112334556666544
Q ss_pred cEEEEEcCcccccHHHHHHHHHhhcC
Q 047225 90 HSVILFDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 90 ~~il~iDeid~~~~~~~~~L~~~l~~ 115 (287)
.++++||+- +++....+.+....
T Consensus 211 -d~illdE~~--d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 211 -DVIFVGEMR--DLETVETALRAAET 233 (372)
T ss_dssp -SEEEESCCC--SHHHHHHHHHHHTT
T ss_pred -CEEEECCCC--CHHHHHHHHHHHhc
Confidence 799999996 44444444444443
No 121
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.56 E-value=5.1e-05 Score=59.92 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=29.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.++|.|+||+||||+++.|++.+...+.++..++.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 589999999999999999999986555556655543
No 122
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.55 E-value=8.8e-05 Score=57.78 Aligned_cols=27 Identities=22% Similarity=0.471 Sum_probs=23.5
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHh
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+...++|+||+|+||||+++.|+..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 334479999999999999999999887
No 123
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.54 E-value=0.00017 Score=64.50 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=32.8
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM 57 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 57 (287)
..++++||+|+||||++..|+..+...+..+..+++..+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 4799999999999999999999886666777777765543
No 124
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.54 E-value=5.5e-05 Score=59.49 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
+++|+|++|+||||+++.|++.+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999998
No 125
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.54 E-value=0.00076 Score=62.88 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=20.0
Q ss_pred EEEEEeccCCChHHHHHHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAF 39 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~ 39 (287)
..+.++|++|+|||++|+.+++
T Consensus 148 ~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 148 GWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEcCCCCCHHHHHHHHHh
Confidence 4799999999999999999875
No 126
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.54 E-value=7.2e-05 Score=59.76 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=25.2
Q ss_pred CCCCCCCcEEEEEeccCCChHHHHHHHHHHHh
Q 047225 10 IRDPNRPISSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 10 ~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 41 (287)
...+.+|. .++|.|+||+||||+++.|++.+
T Consensus 14 ~~~~~~~~-~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 14 LVPRGSHM-RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp --CCCSCC-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCCCe-EEEEECCCCCCHHHHHHHHHHHh
Confidence 33445555 69999999999999999999988
No 127
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.53 E-value=7.6e-05 Score=57.76 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|++|+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998
No 128
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.49 E-value=7.2e-05 Score=58.98 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=27.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.++|.|+||+||||+++.|++.+...+.++..++.+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 599999999999999999999885444334444443
No 129
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.48 E-value=0.00035 Score=57.29 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=28.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
.+++.||||+|||+++..++......+...++++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 6999999999999998888776544455666666543
No 130
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.47 E-value=0.00025 Score=57.13 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=51.9
Q ss_pred EEEEeccCCChHHH-HHHHHHHHhcCCCCceEEecccc--cccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEE
Q 047225 19 SFLFTGPTGVGKTE-LANALAFEYFGSKEAMVRIDMSE--YMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILF 95 (287)
Q Consensus 19 ~ill~Gp~GtGKT~-la~~la~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 95 (287)
..+++||-|+|||+ +.+.+ ..+...+.....++... ......+...+|.............+.+.+. .+..+|+|
T Consensus 30 I~vitG~M~sGKTT~Llr~~-~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i~-~~~dvV~I 107 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRL-RRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHDL-TNVDVIGI 107 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSCC-TTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHHh-cCCCEEEE
Confidence 58899999999999 55555 44433344444443321 1111122222221111111122223333322 34469999
Q ss_pred cCcccccHHHHHHHHHhhcC
Q 047225 96 DEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 96 Deid~~~~~~~~~L~~~l~~ 115 (287)
||+..+++++.+.+..+.+.
T Consensus 108 DEaQFf~~~~v~~l~~la~~ 127 (219)
T 3e2i_A 108 DEVQFFDDEIVSIVEKLSAD 127 (219)
T ss_dssp CCGGGSCTHHHHHHHHHHHT
T ss_pred echhcCCHHHHHHHHHHHHC
Confidence 99999999999999988864
No 131
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.47 E-value=7.7e-05 Score=59.59 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=22.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||+|+||||+++.|++.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999998
No 132
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.46 E-value=9.9e-05 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999988
No 133
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.45 E-value=0.0004 Score=57.08 Aligned_cols=23 Identities=39% Similarity=0.306 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++||+|+|||.++..++...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 48999999999999998888776
No 134
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.45 E-value=0.00013 Score=60.66 Aligned_cols=42 Identities=29% Similarity=0.530 Sum_probs=30.3
Q ss_pred CCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 11 RDPNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 11 ~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
....+|. .++|.|+||+||||+++.|+..+. ...+.++...+
T Consensus 27 ~~~~~~~-~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~ 68 (253)
T 2p5t_B 27 KSSKQPI-AILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSF 68 (253)
T ss_dssp CCCSSCE-EEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGG
T ss_pred CcccCCe-EEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHH
Confidence 3334444 699999999999999999999883 33445555443
No 135
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.45 E-value=5.9e-05 Score=59.94 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|+||+|+||||+++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 488999999999999999999874
No 136
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.44 E-value=0.00013 Score=61.86 Aligned_cols=39 Identities=33% Similarity=0.466 Sum_probs=29.1
Q ss_pred CCCCcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 13 PNRPISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 13 ~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
..+|. .++|.||||+||||+++.|++.+. ...+.++...
T Consensus 30 ~~~~~-livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~ 68 (287)
T 1gvn_B 30 VESPT-AFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDT 68 (287)
T ss_dssp CSSCE-EEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHH
T ss_pred CCCCe-EEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechH
Confidence 33454 699999999999999999998872 2345666533
No 137
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.44 E-value=0.0025 Score=58.71 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=51.6
Q ss_pred CcEEEEEcCcccc----cHHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 89 PHSVILFDEIEKA----HRDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 89 ~~~il~iDeid~~----~~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
++-+|+|||+..+ ..+....|.+++..|+- ..+.+|+++..+...
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa----------~GIhLIlaTQRPs~d--------------------- 391 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKARA----------AGIHLILATQRPSVD--------------------- 391 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTT----------TTEEEEEEESCCCTT---------------------
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhh----------CCeEEEEEecCcccc---------------------
Confidence 3469999999855 34667778888876541 134677777665421
Q ss_pred hcCChhHHhccCceEEeCCCCHHHHHHHH
Q 047225 165 RRFRPEFLNRIDEVIVFRQLNKMQLMEIV 193 (287)
Q Consensus 165 ~~~~~~l~~r~~~~i~~~~~~~~~~~~il 193 (287)
.++..+.+.|+..|.+.-.+..+...++
T Consensus 392 -~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 392 -VITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp -TSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred -cccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 2456777888888999988888887776
No 138
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.43 E-value=9.4e-05 Score=57.24 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=22.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
+++|.|++||||||+++.|++.+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999998
No 139
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.43 E-value=0.0004 Score=56.30 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=21.8
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..+.|+||+|+||||+++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 369999999999999999999865
No 140
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.40 E-value=8.4e-05 Score=57.99 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=21.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
+++|.|+||+||||+++.|++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999998
No 141
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.39 E-value=0.00068 Score=55.16 Aligned_cols=92 Identities=10% Similarity=-0.053 Sum_probs=49.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccc-cchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEK-HTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
..+++||.|+|||+.+-..+......+...+.+........ ..+...+|......+......+.+.+ .+..+|+|||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~--~~~dvViIDE 98 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGIDE 98 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHH--TTCSEEEESS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHh--ccCCEEEEEc
Confidence 58889999999998776666666555666655543211110 12222222221111122223455555 3456999999
Q ss_pred cccccHHHHHHHHHhhc
Q 047225 98 IEKAHRDVLNVMLQLLD 114 (287)
Q Consensus 98 id~~~~~~~~~L~~~l~ 114 (287)
+..+.. +..+.+++.
T Consensus 99 aQF~~~--v~el~~~l~ 113 (234)
T 2orv_A 99 GQFFPD--IVEFCEAMA 113 (234)
T ss_dssp GGGCTT--HHHHHHHHH
T ss_pred hhhhhh--HHHHHHHHH
Confidence 999974 444445554
No 142
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.38 E-value=0.00031 Score=61.26 Aligned_cols=83 Identities=22% Similarity=0.140 Sum_probs=49.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC---CcccchhhHH----HHHHhCCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY---VGFENGGQLT----EAVRHRPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~ 91 (287)
.++|+||||+|||+++..++..+...+..+++++.....+.. ....++..... ........+. ..+......
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 699999999999999999998875556677777765433221 12222211110 0001112222 233345557
Q ss_pred EEEEcCccccc
Q 047225 92 VILFDEIEKAH 102 (287)
Q Consensus 92 il~iDeid~~~ 102 (287)
+++||.+..+.
T Consensus 142 lvVIDSi~~l~ 152 (356)
T 3hr8_A 142 LIVVDSVAALV 152 (356)
T ss_dssp EEEEECTTTCC
T ss_pred eEEehHhhhhc
Confidence 99999988654
No 143
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.37 E-value=0.00015 Score=60.38 Aligned_cols=31 Identities=39% Similarity=0.462 Sum_probs=25.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEec
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRID 52 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 52 (287)
.++++||+|+||||+++.|++.+ +..++..|
T Consensus 3 li~I~G~~GSGKSTla~~La~~~---~~~~i~~D 33 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET---GWPVVALD 33 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCCEEECC
T ss_pred EEEEECCCCcCHHHHHHHHHhcC---CCeEEecc
Confidence 58999999999999999999988 44454443
No 144
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.36 E-value=0.00013 Score=56.66 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||+|+||||+++.|+..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999987
No 145
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.35 E-value=0.00015 Score=57.18 Aligned_cols=22 Identities=45% Similarity=0.715 Sum_probs=21.3
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
+++|+|++||||||+++.|++.
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999999998
No 146
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.35 E-value=0.00017 Score=57.53 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=26.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
.+.|.||+|+||||+++.|+..+...+...+.++.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~ 61 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecC
Confidence 69999999999999999999998533333334443
No 147
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.33 E-value=0.00013 Score=57.30 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+|+||+||||+++.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999988
No 148
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.32 E-value=0.00028 Score=61.08 Aligned_cols=88 Identities=19% Similarity=0.267 Sum_probs=47.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc-ccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS-EYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
.++++||+|+||||+.++|+..+..... .+.++.. ++... .....++...+ -|......+..++...+ .++++||
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g-~i~i~~~~e~~~~-~~~~~i~~~~g-gg~~~r~~la~aL~~~p-~ilildE 248 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEER-IISIEDTEEIVFK-HHKNYTQLFFG-GNITSADCLKSCLRMRP-DRIILGE 248 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSC-EEEEESSCCCCCS-SCSSEEEEECB-TTBCHHHHHHHHTTSCC-SEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc-EEEECCeeccccc-cchhEEEEEeC-CChhHHHHHHHHhhhCC-CEEEEcC
Confidence 5999999999999999999998855433 3344322 21100 00000000000 11222223344444444 7999999
Q ss_pred cccccHHHHHHHHHh
Q 047225 98 IEKAHRDVLNVMLQL 112 (287)
Q Consensus 98 id~~~~~~~~~L~~~ 112 (287)
... .++.+.|..+
T Consensus 249 ~~~--~e~~~~l~~~ 261 (330)
T 2pt7_A 249 LRS--SEAYDFYNVL 261 (330)
T ss_dssp CCS--THHHHHHHHH
T ss_pred CCh--HHHHHHHHHH
Confidence 885 3455544443
No 149
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.32 E-value=0.00016 Score=57.08 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=26.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
.++|+||+|+||||+++.|+... ....+.++..+
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~ 44 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDD 44 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccc
Confidence 69999999999999999999863 33445555433
No 150
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.31 E-value=0.00012 Score=57.28 Aligned_cols=23 Identities=48% Similarity=0.690 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
+++|+|+||+||||+++.|++.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999988
No 151
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.31 E-value=0.00014 Score=59.26 Aligned_cols=23 Identities=17% Similarity=0.447 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999987
No 152
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.30 E-value=0.0013 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.328 Sum_probs=21.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.++|+||+|+|||+++..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 699999999999999999997663
No 153
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.29 E-value=0.00098 Score=58.42 Aligned_cols=83 Identities=22% Similarity=0.204 Sum_probs=48.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC---CcccchhhHH----HHHHhCCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY---VGFENGGQLT----EAVRHRPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----~~~~~~~~~ 91 (287)
.++|+||||+|||+++..++......+.++++++.....+.. ....+|..... ........+. ..++.....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~-~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV-YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH-HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 589999999999999999988764445677788775433221 11112211000 0000112222 233345567
Q ss_pred EEEEcCccccc
Q 047225 92 VILFDEIEKAH 102 (287)
Q Consensus 92 il~iDeid~~~ 102 (287)
+|+||.+..+.
T Consensus 155 lVVIDsl~~l~ 165 (366)
T 1xp8_A 155 VVVVDSVAALT 165 (366)
T ss_dssp EEEEECTTTCC
T ss_pred EEEEeChHHhc
Confidence 99999998654
No 154
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.29 E-value=0.00015 Score=56.04 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.||||+||||+++.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5899999999999999999 665
No 155
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.29 E-value=0.00026 Score=55.72 Aligned_cols=36 Identities=28% Similarity=0.199 Sum_probs=28.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
..++|.|++|+||||+++.|+..+...+..+..++.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 369999999999999999999998554555555543
No 156
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.28 E-value=0.00038 Score=60.67 Aligned_cols=83 Identities=20% Similarity=0.214 Sum_probs=48.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC---CcccchhhHHH----HHHhCCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY---VGFENGGQLTE----AVRHRPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~ 91 (287)
.++++||||+|||+++..++......+....+++.....+.. ....+|..... ........+.. .+......
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 699999999999999999988775556677777765432221 11222211000 00001122222 33344567
Q ss_pred EEEEcCccccc
Q 047225 92 VILFDEIEKAH 102 (287)
Q Consensus 92 il~iDeid~~~ 102 (287)
+|+||++..+.
T Consensus 142 lIVIDsl~~l~ 152 (349)
T 2zr9_A 142 IIVIDSVAALV 152 (349)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcChHhhc
Confidence 99999999764
No 157
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.27 E-value=0.00017 Score=58.41 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999988
No 158
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.27 E-value=0.00014 Score=56.92 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=18.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 69999999999999999999988
No 159
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.26 E-value=0.00019 Score=56.62 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999987
No 160
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.26 E-value=0.00028 Score=57.23 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=26.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
.++|.||||+||+|.|+.|++.+ + +..++.++.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~---g--~~hIstGdl 63 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF---H--FNHLSSGDL 63 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH---C--CEEECHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---C--CceEcHHHH
Confidence 68899999999999999999988 2 344555443
No 161
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.26 E-value=0.00022 Score=56.88 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=23.5
Q ss_pred CCCcEEEEEeccCCChHHHHHHHHHHHh
Q 047225 14 NRPISSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 14 ~~~~~~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++. .++|.|++|+||||+++.|++.+
T Consensus 13 ~~~~-~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVS-VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCE-EEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCc-EEEEECCCCCCHHHHHHHHHHHc
Confidence 3443 69999999999999999999987
No 162
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.26 E-value=0.00021 Score=56.46 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999988
No 163
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.25 E-value=0.00044 Score=56.59 Aligned_cols=37 Identities=22% Similarity=0.187 Sum_probs=28.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC------CCCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG------SKEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~------~~~~~~~~~~~~ 55 (287)
.+.|+||+|+|||++++.++..... .....++++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 6999999999999999999986321 245566776654
No 164
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.25 E-value=0.00021 Score=57.03 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|++|+||||+++.|++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999988
No 165
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.24 E-value=0.00019 Score=55.66 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|++|+||||+++.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 166
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.24 E-value=0.00021 Score=57.66 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999988
No 167
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.24 E-value=0.00019 Score=57.88 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=21.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 168
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.23 E-value=0.00027 Score=55.25 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=27.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEec
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRID 52 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 52 (287)
.+.|+|++|+||||+++.|+..+...+.+++.++
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 6899999999999999999998744445555554
No 169
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.22 E-value=0.00025 Score=58.62 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=23.4
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHh
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l 41 (287)
+|. .++|+||||+||||+++.|++.+
T Consensus 28 ~~~-~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDG-RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCc-EEEEECCCCCCHHHHHHHHHHHh
Confidence 444 69999999999999999999987
No 170
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.22 E-value=0.00025 Score=55.71 Aligned_cols=23 Identities=43% Similarity=0.693 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999987
No 171
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.22 E-value=0.00027 Score=56.83 Aligned_cols=33 Identities=36% Similarity=0.543 Sum_probs=26.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
.++|.||||+||+|.|+.|++.+ + +..++.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~---g--~~~istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK---G--FVHISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH---C--CeEEcHHHH
Confidence 58899999999999999999988 3 344555443
No 172
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.21 E-value=0.00024 Score=54.83 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=21.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 173
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.21 E-value=0.00037 Score=56.09 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=27.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
.++|+||+|+|||+++..++. . .+...++++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-L--SGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEECCC
Confidence 699999999999999999998 2 245667776654
No 174
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.20 E-value=0.00058 Score=59.65 Aligned_cols=83 Identities=18% Similarity=0.183 Sum_probs=48.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCC---cccchhhHH----HHHHhCCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYV---GFENGGQLT----EAVRHRPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~ 91 (287)
.++++|+||+|||+++..++......+...++++.....+... ...+|...... .......+. ..++.....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-HHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 6999999999999999999987754556777888754332211 11122110000 000111222 233345567
Q ss_pred EEEEcCccccc
Q 047225 92 VILFDEIEKAH 102 (287)
Q Consensus 92 il~iDeid~~~ 102 (287)
+|+||.+..+.
T Consensus 144 lVVIDsl~~l~ 154 (356)
T 1u94_A 144 VIVVDSVAALT 154 (356)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcCHHHhc
Confidence 99999998764
No 175
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.19 E-value=0.00028 Score=57.82 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999998
No 176
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.19 E-value=0.00032 Score=55.22 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999988
No 177
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.18 E-value=0.00021 Score=55.59 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++|.|+||+||||+++.|++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHhh
Confidence 5899999999999999999983
No 178
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.16 E-value=0.0013 Score=58.73 Aligned_cols=91 Identities=13% Similarity=0.034 Sum_probs=50.8
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhC---CCCCCCcccchhhHHHHHHhCC----
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFG---SPPGYVGFENGGQLTEAVRHRP---- 89 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---- 89 (287)
....++.|+||||||++...++.. .....+....... ..+..-+. .... ... ....+..++....
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~-----~~~lVlTpT~~aa-~~l~~kl~~~~~~~~-~~~-~V~T~dsfL~~~~~~~~ 232 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF-----EEDLILVPGRQAA-EMIRRRANASGIIVA-TKD-NVRTVDSFLMNYGKGAR 232 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT-----TTCEEEESCHHHH-HHHHHHHTTTSCCCC-CTT-TEEEHHHHHHTTTSSCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc-----CCeEEEeCCHHHH-HHHHHHhhhcCcccc-ccc-eEEEeHHhhcCCCCCCC
Confidence 346899999999999999877642 1222222221111 11111111 1000 000 1123334433321
Q ss_pred --cEEEEEcCcccccHHHHHHHHHhhcC
Q 047225 90 --HSVILFDEIEKAHRDVLNVMLQLLDD 115 (287)
Q Consensus 90 --~~il~iDeid~~~~~~~~~L~~~l~~ 115 (287)
..+++|||+-.+++..+..+..++..
T Consensus 233 ~~~d~liiDE~sm~~~~~l~~l~~~~~~ 260 (446)
T 3vkw_A 233 CQFKRLFIDEGLMLHTGCVNFLVEMSLC 260 (446)
T ss_dssp CCCSEEEEETGGGSCHHHHHHHHHHTTC
T ss_pred CcCCEEEEeCcccCCHHHHHHHHHhCCC
Confidence 46999999999999998888877653
No 179
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.16 E-value=0.00027 Score=58.97 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=27.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.++|.|+||+||||+++.|++.+...+..++.++..
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 699999999999999999999863334555544543
No 180
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.16 E-value=0.00046 Score=71.15 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=51.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCC-CCCcc------cchhhHHHHHHhCCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPP-GYVGF------ENGGQLTEAVRHRPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~ 91 (287)
.++++||||||||++|++++......+.+.+.++.....+.. +...+|-.. .+.+. .....++..++....+
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~-~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~ 1162 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI-YARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1162 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHH-HHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCe
Confidence 599999999999999999998875556777788775533221 112222110 01111 0112344445566678
Q ss_pred EEEEcCcccc
Q 047225 92 VILFDEIEKA 101 (287)
Q Consensus 92 il~iDeid~~ 101 (287)
++++|+++-+
T Consensus 1163 ~i~~d~~~al 1172 (1706)
T 3cmw_A 1163 VIVVDSVAAL 1172 (1706)
T ss_dssp EEEESCGGGC
T ss_pred EEEeCchHhc
Confidence 9999998833
No 181
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.15 E-value=0.00027 Score=56.06 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999988
No 182
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.15 E-value=0.00032 Score=56.22 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
.++|.|++|+||||+++.|++.+..
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6999999999999999999998743
No 183
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.15 E-value=0.00031 Score=55.41 Aligned_cols=33 Identities=24% Similarity=0.105 Sum_probs=25.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEe
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRI 51 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 51 (287)
.+.|.|++|+||||+++.|++.+...+.+++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 488999999999999999999874334444433
No 184
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.14 E-value=0.00048 Score=55.33 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=23.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
..+.|.||+|+||||+++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3699999999999999999999985
No 185
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.13 E-value=0.00043 Score=55.34 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=23.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.++|.|+||+||||+++.|++.+...
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 69999999999999999999998543
No 186
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.12 E-value=0.00028 Score=56.29 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||+|+||||+++.|+..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 69999999999999999999987
No 187
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.11 E-value=0.00032 Score=56.39 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|+||+|+||||+++.|+..+.
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 699999999999999999998873
No 188
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.10 E-value=0.00041 Score=55.64 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=24.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCce
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAM 48 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 48 (287)
.++|.|++|+||||+++.|++.+.......
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 699999999999999999999874333333
No 189
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.08 E-value=0.00035 Score=56.33 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 190
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.07 E-value=0.0003 Score=56.96 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999998
No 191
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.07 E-value=0.0084 Score=54.73 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=47.7
Q ss_pred CcEEEEEcCccccc----HHHHHHHHHhhcCceeecCCCceeeccceEEEEeecCCchhhhhhccCCchHHHHHHHHHHH
Q 047225 89 PHSVILFDEIEKAH----RDVLNVMLQLLDDGRVTDGKGQTVDLKNTIIIMTSNIGDSVIARESILGSDQMERGVAEELR 164 (287)
Q Consensus 89 ~~~il~iDeid~~~----~~~~~~L~~~l~~~~~~~~~g~~i~~~~~~iI~t~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (287)
|+-+++|||+..+- ..+.+.+.++...++- ..+.+|+++..+...
T Consensus 297 P~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa----------~GI~LIlaTQrp~~d--------------------- 345 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTVGKKVEELIARLAQKARA----------AGIHLVLATQRPSVD--------------------- 345 (512)
T ss_dssp CEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGG----------GTEEEEEEESCCCTT---------------------
T ss_pred CcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhh----------CCcEEEEEecCCccc---------------------
Confidence 33589999996432 2445556666655431 134566777665422
Q ss_pred hcCChhHHhccCceEEeCCCCHHHHHHHHH
Q 047225 165 RRFRPEFLNRIDEVIVFRQLNKMQLMEIVD 194 (287)
Q Consensus 165 ~~~~~~l~~r~~~~i~~~~~~~~~~~~il~ 194 (287)
.++..+.+.++..|.|.-.+..+...++.
T Consensus 346 -vl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 346 -VITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp -TSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred -cccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 24556778887888898888888887774
No 192
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.07 E-value=0.00054 Score=54.73 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=28.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.+.+.|++|+||||+++.|+..+...+..+...+..
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 699999999999999999999875444555544433
No 193
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.05 E-value=0.00033 Score=56.82 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999998
No 194
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.05 E-value=0.00041 Score=54.36 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=21.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||+|+||||+++.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 59999999999999999999876
No 195
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.05 E-value=0.0044 Score=55.26 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=21.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+|+||+||||+++.|++.+
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 69999999999999999999876
No 196
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.05 E-value=0.00049 Score=55.82 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||+|+||||+++.|+..+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999987
No 197
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.05 E-value=0.00052 Score=56.89 Aligned_cols=39 Identities=13% Similarity=0.185 Sum_probs=28.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC-----CCceEEecccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS-----KEAMVRIDMSEYM 57 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~-----~~~~~~~~~~~~~ 57 (287)
.+.|.|++|+||||+++.|++.+... +.....+++.++.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 69999999999999999999987321 1233456665554
No 198
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.03 E-value=0.00085 Score=57.74 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=31.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
..++++|++|+||||++..||..+...+..+..+++..+
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 479999999999999999999988666667776666543
No 199
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.02 E-value=0.00047 Score=59.24 Aligned_cols=31 Identities=39% Similarity=0.605 Sum_probs=26.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEec
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRID 52 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 52 (287)
.++|+||+|+|||++++.|++.+ +..++..|
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~D 37 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVD 37 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEecc
Confidence 69999999999999999999998 44555554
No 200
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.02 E-value=0.00039 Score=55.27 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 48999999999999999999998
No 201
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.01 E-value=0.00055 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|.||+|+||||+++.|++.+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999988
No 202
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.00 E-value=0.001 Score=56.89 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=29.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc--CCCCceEEeccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF--GSKEAMVRIDMSEY 56 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~--~~~~~~~~~~~~~~ 56 (287)
.+.|.||+|+||||+++.|+..+. +....+..+++..+
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 699999999999999999999885 44455555555443
No 203
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.00 E-value=0.00042 Score=55.27 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+|++|+||||+++.|+. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 589999999999999999998 6
No 204
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.99 E-value=0.00047 Score=54.49 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=24.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMV 49 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 49 (287)
.+.|.|++|+||||+++.|++.+...+.+++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~ 32 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 3889999999999999999998843344444
No 205
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.99 E-value=0.00037 Score=55.77 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||+|+||||+++.|+..+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999987
No 206
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.98 E-value=0.00048 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|.|++|+||||+++.|++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 69999999999999999999987
No 207
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.97 E-value=0.002 Score=67.31 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=53.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCC-C------CCcccchhhHHH-HHHhCCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPP-G------YVGFENGGQLTE-AVRHRPH 90 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~-~~~~~~~ 90 (287)
+++++||||||||+++..++......+.+..++++.+..+... ...+|-.. . ..+ .....+.+ ..+....
T Consensus 1083 ~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~-a~~~G~dl~~l~~~~pd~~-e~~~~i~~~l~~~~~~ 1160 (2050)
T 3cmu_A 1083 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTG-EQALEICDALARSGAV 1160 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSH-HHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHH-HHHcCCChhHheeecCcch-HHHHHHHHHHHHhCCC
Confidence 6999999999999999999988777788889999877655432 12222100 0 011 01112222 3334556
Q ss_pred EEEEEcCccccc
Q 047225 91 SVILFDEIEKAH 102 (287)
Q Consensus 91 ~il~iDeid~~~ 102 (287)
.+|+||++..+.
T Consensus 1161 dlvVIDsl~~L~ 1172 (2050)
T 3cmu_A 1161 DVIVVDSVAALT 1172 (2050)
T ss_dssp SEEEESCGGGCC
T ss_pred CEEEECCccccc
Confidence 799999999773
No 208
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.97 E-value=0.00064 Score=57.88 Aligned_cols=31 Identities=32% Similarity=0.495 Sum_probs=25.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEec
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRID 52 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 52 (287)
.++++||+|+|||+++..|++.+ +..++..|
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~---~~~iis~D 42 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL---PVELISVD 42 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEECC
T ss_pred EEEEECCCccCHHHHHHHHHHhC---CCcEEecc
Confidence 58999999999999999999998 34444443
No 209
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.96 E-value=0.0021 Score=55.87 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=30.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcC------CCCceEEecccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFG------SKEAMVRIDMSE 55 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~------~~~~~~~~~~~~ 55 (287)
..+.|+||||+|||+++..++..... .+...++++...
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 36899999999999999999987422 345677887755
No 210
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.96 E-value=0.00047 Score=56.86 Aligned_cols=23 Identities=26% Similarity=0.559 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||+|+||||+++.|++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999887
No 211
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.95 E-value=0.0021 Score=57.05 Aligned_cols=37 Identities=22% Similarity=0.191 Sum_probs=27.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC------CCCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG------SKEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~------~~~~~~~~~~~~ 55 (287)
.+.|+||||+|||+++..++..... .....++++...
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 6999999999999999977644311 245577777654
No 212
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.95 E-value=0.00047 Score=54.89 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=21.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||+|+||||+++.|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 68999999999999999999875
No 213
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.95 E-value=0.00095 Score=57.00 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=28.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
.++|+||+|+||||+++.|+..+...+..+.....
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~ 138 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAG 138 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEee
Confidence 79999999999999999999998766655554444
No 214
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.94 E-value=0.0007 Score=55.01 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 215
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.93 E-value=0.0013 Score=56.59 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=30.7
Q ss_pred CCCCcEEEEEeccCCChHHHHHHHHHHHhcC--CCCceEEeccccc
Q 047225 13 PNRPISSFLFTGPTGVGKTELANALAFEYFG--SKEAMVRIDMSEY 56 (287)
Q Consensus 13 ~~~~~~~ill~Gp~GtGKT~la~~la~~l~~--~~~~~~~~~~~~~ 56 (287)
..+|. .+.|.||+|+||||+++.|+..+.. ....+..+....+
T Consensus 89 ~~~p~-iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 89 PKVPY-IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCCE-EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCCE-EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 44555 6999999999999999999998842 2334444444443
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.91 E-value=0.0014 Score=59.50 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=29.1
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
..++|+|++|+||||+++.|+..+...+..+...+..
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 3799999999999999999999886555555544443
No 217
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.91 E-value=0.00084 Score=57.34 Aligned_cols=84 Identities=13% Similarity=0.213 Sum_probs=48.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcC--CCCceEEecccccccccchhhhhCCCCCC---CcccchhhH-HH---H---H
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFG--SKEAMVRIDMSEYMEKHTVSKFFGSPPGY---VGFENGGQL-TE---A---V 85 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~---~---~ 85 (287)
+.++++||||+|||+++-.++..... .+..+++++...-.+.. ....+|-.... ...+....+ .+ . +
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i 107 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-YLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAI 107 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-HHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh
Confidence 36899999999999998777766533 25677888875543321 12222321110 011112223 22 2 2
Q ss_pred HhCCcEEEEEcCccccc
Q 047225 86 RHRPHSVILFDEIEKAH 102 (287)
Q Consensus 86 ~~~~~~il~iDeid~~~ 102 (287)
++....+++||-+..+.
T Consensus 108 ~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp CTTCCEEEEEECSTTCB
T ss_pred hccCceEEEEecccccc
Confidence 44567899999988663
No 218
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.91 E-value=0.00054 Score=53.98 Aligned_cols=23 Identities=39% Similarity=0.732 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||+|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 58899999999999999998754
No 219
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.91 E-value=0.00062 Score=54.07 Aligned_cols=22 Identities=32% Similarity=0.293 Sum_probs=20.9
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.+.|+|++|+||||+++.|++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6999999999999999999986
No 220
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.90 E-value=0.00083 Score=55.72 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|.||+|+||||+++.|++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 69999999999999999999887
No 221
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.90 E-value=0.00068 Score=54.50 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=27.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc-CCCCceEEecc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF-GSKEAMVRIDM 53 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~~ 53 (287)
.++|.|++|+||||+++.|+..+. ..+.+.+.++.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 699999999999999999999884 23344566653
No 222
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.90 E-value=0.00047 Score=54.95 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||+|+||||+++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 69999999999999999999877
No 223
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.88 E-value=0.00069 Score=54.30 Aligned_cols=24 Identities=42% Similarity=0.332 Sum_probs=22.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|.||+|+||||+++.|+..+.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999999873
No 224
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.86 E-value=0.00057 Score=58.97 Aligned_cols=31 Identities=29% Similarity=0.505 Sum_probs=25.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEec
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRID 52 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 52 (287)
.++|+||+|+|||+++..||+.+ +..++..|
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~D 72 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF---PLEVINSD 72 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS---CEEEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHHHC---CCcEEccc
Confidence 69999999999999999999988 44444443
No 225
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.85 E-value=0.00077 Score=53.55 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=26.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
.+.|+|++||||||+++.|++.+ +. ..+++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l---g~--~vid~D~~ 46 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY---GA--HVVNVDRI 46 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CC--EEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CC--EEEECcHH
Confidence 58999999999999999999986 33 44555544
No 226
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.84 E-value=0.0012 Score=50.70 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=22.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..+.|.||.|+||||+++.++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 369999999999999999999998
No 227
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.83 E-value=0.0021 Score=57.56 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=33.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC-CCceEEecccccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS-KEAMVRIDMSEYM 57 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~~~~~ 57 (287)
..++++|++|+||||++-.||..+... +.....+++..+.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 479999999999999999999988665 6777778877554
No 228
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.82 E-value=0.00065 Score=53.51 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|+||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999998873
No 229
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.81 E-value=0.00088 Score=53.59 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=26.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
..+.++|++|+||||+++.|+..+. .+..++...+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 3699999999999999999998652 2444554443
No 230
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.81 E-value=0.00059 Score=54.41 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||+|+||||+++.|...+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999999876
No 231
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.80 E-value=0.0011 Score=56.68 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=31.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
..++++||+|+||||++..||..+...+..+..+++..+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 479999999999999999999988655566666665443
No 232
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.79 E-value=0.0011 Score=52.88 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|.|++|+||||+++.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 59999999999999999999988
No 233
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.78 E-value=0.00094 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=21.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||+|+||||+++.|....
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58999999999999999999876
No 234
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.77 E-value=0.0011 Score=51.41 Aligned_cols=35 Identities=14% Similarity=0.068 Sum_probs=27.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
.+.|.|++|+||||++..|+..+...+..+..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 69999999999999999999988554555544443
No 235
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.77 E-value=0.0013 Score=56.13 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=28.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
..++|+||+|+||||+++.|+..+...+..+.....
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~ 136 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 136 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEee
Confidence 479999999999999999999998655555544443
No 236
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.75 E-value=0.00069 Score=53.51 Aligned_cols=22 Identities=41% Similarity=0.800 Sum_probs=20.6
Q ss_pred EEEeccCCChHHHHHHHHHHHh
Q 047225 20 FLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l 41 (287)
++|+||+|+||||+++.|.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8899999999999999998876
No 237
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.75 E-value=0.00089 Score=55.49 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+|++|+||||+++.|+..+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 59999999999999999999988
No 238
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.74 E-value=0.00074 Score=53.94 Aligned_cols=21 Identities=38% Similarity=0.422 Sum_probs=19.9
Q ss_pred EEEEeccCCChHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAF 39 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~ 39 (287)
.+.|+||+|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 239
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.74 E-value=0.0021 Score=52.53 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=25.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMV 49 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 49 (287)
.+.|.|++|+||||+++.|++.+.. +..++
T Consensus 28 ~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 28 FITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 6999999999999999999999965 44444
No 240
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.73 E-value=0.0018 Score=57.84 Aligned_cols=80 Identities=25% Similarity=0.306 Sum_probs=45.5
Q ss_pred CcEEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc-cccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEE
Q 047225 16 PISSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM-SEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVIL 94 (287)
Q Consensus 16 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ 94 (287)
+...++++||+|+||||+.++++..+......++++.. -++.........+ ....++.....+...++..+ .+++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v---~~~~g~~f~~~lr~~Lrq~p-d~i~ 241 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQV---NPRVDMTFARGLRAILRQDP-DVVM 241 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEEC---BGGGTBCHHHHHHHHGGGCC-SEEE
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEE---ccccCcCHHHHHHHHhccCC-CeEE
Confidence 34579999999999999999999988655555554432 1111000000000 01122223334455566655 5778
Q ss_pred EcCcc
Q 047225 95 FDEIE 99 (287)
Q Consensus 95 iDeid 99 (287)
+.|+.
T Consensus 242 vgEiR 246 (418)
T 1p9r_A 242 VGEIR 246 (418)
T ss_dssp ESCCC
T ss_pred EcCcC
Confidence 88875
No 241
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.70 E-value=0.0011 Score=55.82 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=22.1
Q ss_pred CCCCcEEEEEeccCCChHHHHHHHHHH
Q 047225 13 PNRPISSFLFTGPTGVGKTELANALAF 39 (287)
Q Consensus 13 ~~~~~~~ill~Gp~GtGKT~la~~la~ 39 (287)
++++. .+.|+|++|+||||+++.|+.
T Consensus 72 ~~~~~-iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 72 PSGLY-VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTCE-EEEEEECTTSCHHHHHHHHHH
T ss_pred CCCCE-EEEEECCCCCCHHHHHHHHHH
Confidence 34454 699999999999999999994
No 242
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.70 E-value=0.0015 Score=56.29 Aligned_cols=36 Identities=25% Similarity=0.171 Sum_probs=28.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
..++|+||+|+||||+++.|+..+...+..+....+
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~ 165 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAAS 165 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEee
Confidence 479999999999999999999988655555554443
No 243
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.68 E-value=0.001 Score=53.30 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||+|+||||+++.|+..+
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68999999999999999999887
No 244
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.68 E-value=0.0013 Score=53.09 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=20.1
Q ss_pred EEEEeccCCChHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAF 39 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~ 39 (287)
.+.|.|++|+||||+++.|+.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999987
No 245
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.66 E-value=0.00061 Score=57.80 Aligned_cols=39 Identities=15% Similarity=0.261 Sum_probs=27.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYM 57 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 57 (287)
.+.+.||+|+||||+++.|++.+...+..+..+++..+.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 599999999999999999999874333446667776665
No 246
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.66 E-value=0.0014 Score=56.80 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
+++|+|++|+||||+++.|+..+
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 69999999999999999999987
No 247
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.65 E-value=0.0013 Score=56.88 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+++.||+|+|||++++.|+..+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 69999999999999999999998
No 248
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.65 E-value=0.0091 Score=60.23 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~ 40 (287)
..+.|+|+.|+|||+||+.+++.
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcC
Confidence 46999999999999999998875
No 249
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.65 E-value=0.0015 Score=55.44 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=24.8
Q ss_pred CCCCcEEEEEeccCCChHHHHHHHHHHHhc
Q 047225 13 PNRPISSFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 13 ~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
+++|. .+.+.||+|+||||+++.|+..+.
T Consensus 28 ~~~~~-ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPL-FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCe-EEEEECCCCCCHHHHHHHHHHHhh
Confidence 44454 699999999999999999999884
No 250
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.65 E-value=0.0017 Score=59.50 Aligned_cols=32 Identities=31% Similarity=0.308 Sum_probs=25.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEe
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRI 51 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 51 (287)
+++++||+|+||||+.++++..+... ...+++
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~-~giiti 293 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPD-AKVVSI 293 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTT-CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCC-CCEEEE
Confidence 59999999999999999999888543 344444
No 251
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.64 E-value=0.0043 Score=56.00 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=28.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC-CCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG-SKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~-~~~~~~~~~~~ 54 (287)
.+++.|+||+|||+++..++..... .+.++.+++..
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 6999999999999999999987743 34466666643
No 252
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.64 E-value=0.0013 Score=56.10 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=21.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+++.||+|+|||+++..|++.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 58999999999999999999987
No 253
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.63 E-value=0.0018 Score=55.11 Aligned_cols=39 Identities=26% Similarity=0.329 Sum_probs=31.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
..++++|++|+||||++..|+..+...+..+..+++..+
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 368899999999999999999988655666776766543
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.60 E-value=0.0011 Score=53.60 Aligned_cols=23 Identities=39% Similarity=0.739 Sum_probs=21.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||+|+||||+++.|+..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999877
No 255
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.60 E-value=0.0019 Score=56.32 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=28.8
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
..++|+||+|+||||+++.|+..+...+..+....+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~ 193 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAG 193 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecc
Confidence 479999999999999999999998655555554443
No 256
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.59 E-value=0.002 Score=52.69 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=23.6
Q ss_pred CCCCcEEEEEeccCCChHHHHHHHHHHHh
Q 047225 13 PNRPISSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 13 ~~~~~~~ill~Gp~GtGKT~la~~la~~l 41 (287)
+.++. .+.|.|++|+||||+++.|+..+
T Consensus 13 ~~~~~-~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTI-QIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCC-EEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCc-EEEEECCCCCCHHHHHHHHHHHc
Confidence 33444 69999999999999999999987
No 257
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.58 E-value=0.0022 Score=58.99 Aligned_cols=36 Identities=31% Similarity=0.352 Sum_probs=28.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.++|.||+|+|||++++.++......+.+.+++...
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 699999999999999999998876555555555443
No 258
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.58 E-value=0.0018 Score=57.18 Aligned_cols=23 Identities=39% Similarity=0.693 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+++.||+|+|||+++..|++.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 58999999999999999999998
No 259
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.56 E-value=0.00067 Score=54.39 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|.|++|+||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999884
No 260
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.55 E-value=0.0035 Score=56.88 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=27.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
.++++|.||+||||+++.|++.+.....+...++.
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~ 75 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 75 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccCCCceEEec
Confidence 69999999999999999999987433344444443
No 261
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.55 E-value=0.0018 Score=55.10 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=30.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC-CCCceEEeccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG-SKEAMVRIDMSEY 56 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~ 56 (287)
.++|+||+|+||||++..|+..+.. .+..+..+++..+
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 7999999999999999999998853 4556666666544
No 262
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.54 E-value=0.0013 Score=51.11 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=17.3
Q ss_pred EEEEeccCCChHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANAL 37 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~l 37 (287)
.+.|+||+|+||||+++.+
T Consensus 11 i~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999963
No 263
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.54 E-value=0.0014 Score=53.09 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|+||+|+|||||.+.|+..+.
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 589999999999999999998874
No 264
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.54 E-value=0.0088 Score=48.75 Aligned_cols=20 Identities=30% Similarity=0.493 Sum_probs=16.5
Q ss_pred EEEEeccCCChHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALA 38 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la 38 (287)
.+++.||+|||||++...+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 69999999999998665543
No 265
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.53 E-value=0.0019 Score=56.81 Aligned_cols=23 Identities=48% Similarity=0.606 Sum_probs=21.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||+|+||||+++.|+..+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 69999999999999999999877
No 266
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.49 E-value=0.0016 Score=53.36 Aligned_cols=21 Identities=43% Similarity=0.740 Sum_probs=19.7
Q ss_pred EEEEeccCCChHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAF 39 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~ 39 (287)
.+.|+||+|+||||+++.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 699999999999999999984
No 267
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.42 E-value=0.0044 Score=64.01 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=51.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCC---CcccchhhHHHHH----HhCCcE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGY---VGFENGGQLTEAV----RHRPHS 91 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~ 91 (287)
.++|.||||+|||+++..++......+.++.+++.....+... ...+|-.... ........+...+ ......
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~-A~~lGvd~~~L~i~~~~~leei~~~l~~lv~~~~~~ 812 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 812 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHH-HHHcCCChhheEEecCCcHHHHHHHHHHHHHccCCC
Confidence 6999999999999999999988755556777887755443211 2222211000 0001122333333 345668
Q ss_pred EEEEcCccccc
Q 047225 92 VILFDEIEKAH 102 (287)
Q Consensus 92 il~iDeid~~~ 102 (287)
+|+||.+..+.
T Consensus 813 lVVIDsLq~l~ 823 (1706)
T 3cmw_A 813 VIVVDSVAALT 823 (1706)
T ss_dssp EEEESCSTTCC
T ss_pred EEEEechhhhc
Confidence 99999999765
No 268
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.41 E-value=0.0018 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=21.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.|+||+||||+++.|++.+
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999864
No 269
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.41 E-value=0.0074 Score=59.55 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.+.++|+.|+|||+||+.+++.
T Consensus 152 VV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 152 NVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp EEEECCSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCccHHHHHHHHHHh
Confidence 7999999999999999999853
No 270
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.40 E-value=0.0025 Score=52.47 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=21.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|.||+|+||||+++.|+..+
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999987
No 271
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.40 E-value=0.0029 Score=58.84 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=32.3
Q ss_pred hhccCCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCCC-CceEEecc
Q 047225 6 ARVGIRDPNRPISSFLFTGPTGVGKTELANALAFEYFGSK-EAMVRIDM 53 (287)
Q Consensus 6 ~~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~-~~~~~~~~ 53 (287)
.|..+...++....++|.|++|+||||+++.|++.+...+ .+++.++.
T Consensus 385 lRe~~~~~gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 385 LRESNPPRATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp HHTTSCCTTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred HHHhcccccccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 4444432222334699999999999999999999984322 45555553
No 272
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.39 E-value=0.0015 Score=53.66 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||+|+||||+.+.|+..+.+.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 68999999999999999999887544
No 273
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.39 E-value=0.002 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=21.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+|++|+|||++++.|++.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 59999999999999999999987
No 274
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.38 E-value=0.0027 Score=49.52 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=24.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCce
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAM 48 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 48 (287)
.+.|.|++|+||||+++.|...+...+...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v 37 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRP 37 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEEeCCCCCHHHHHHHHHHhccccCCce
Confidence 699999999999999999998874333333
No 275
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.37 E-value=0.0021 Score=54.80 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||+|+||||+++.|+..+
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhhc
Confidence 69999999999999999999988
No 276
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.36 E-value=0.0018 Score=53.32 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=23.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+||||+.+.++..+.+.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 68999999999999999999887543
No 277
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.36 E-value=0.002 Score=51.22 Aligned_cols=23 Identities=43% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|.||+|+|||+++..|++..
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999876
No 278
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.35 E-value=0.0013 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=15.2
Q ss_pred EEEEeccCCChHHHHHHHHH-HHh
Q 047225 19 SFLFTGPTGVGKTELANALA-FEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la-~~l 41 (287)
.+.|+||+|+||||+++.|+ ..+
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 58999999999999999999 765
No 279
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.34 E-value=0.0024 Score=52.58 Aligned_cols=29 Identities=31% Similarity=0.449 Sum_probs=24.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKE 46 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~ 46 (287)
..+.|+||.|+||||+.+.|+..+.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAG 57 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCSBS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 36899999999999999999988754433
No 280
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.34 E-value=0.0015 Score=53.24 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+|||||.+.++..+.+.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 58899999999999999999877443
No 281
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.33 E-value=0.0048 Score=58.29 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=21.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEe
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRI 51 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 51 (287)
..++.||||||||+++-.+...+...+..+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~ 239 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 239 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 589999999999975554444443334444333
No 282
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.32 E-value=0.0021 Score=58.70 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=23.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+++|.|.+||||||++++|++.+.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999994
No 283
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.31 E-value=0.0029 Score=54.21 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=23.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
.+.|.||+|+||||+++.|+..+..
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCchHHHHHHHHHhhccc
Confidence 6999999999999999999998854
No 284
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.30 E-value=0.0024 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
++.|+||+|+||||+.+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999999999999999998744
No 285
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.29 E-value=0.0032 Score=53.31 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=27.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC-CCceEEecc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS-KEAMVRIDM 53 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~ 53 (287)
.++|.||||+|||++++.++..+... +..+.+++.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 69999999999999999999988543 335555544
No 286
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.26 E-value=0.0037 Score=58.46 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=28.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEec
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRID 52 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 52 (287)
.|+|.|.+|+||||+++.|++.+...+.+++.++
T Consensus 54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 6999999999999999999999854455566554
No 287
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.26 E-value=0.0041 Score=50.15 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=26.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMV 49 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 49 (287)
.+.|.|++|+||||+++.|++.+...+.+++
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 5899999999999999999999965555544
No 288
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.25 E-value=0.0034 Score=58.01 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=28.8
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCC-ceEEecccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKE-AMVRIDMSE 55 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~-~~~~~~~~~ 55 (287)
..++|+|++|+||||+++.|+..+...+. .+..++...
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 36999999999999999999999854432 344455433
No 289
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.23 E-value=0.0023 Score=49.78 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=23.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+|++|+||||+++.|+..+...
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 58899999999999999999998544
No 290
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.23 E-value=0.002 Score=53.76 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=23.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+|||||.+.|+..+.+.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 68999999999999999999887543
No 291
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.23 E-value=0.0028 Score=58.21 Aligned_cols=36 Identities=14% Similarity=0.078 Sum_probs=27.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.++++|.||+||||+++.|++.+.-.......++.+
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 699999999999999999999874333344344433
No 292
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.22 E-value=0.0024 Score=53.37 Aligned_cols=29 Identities=28% Similarity=0.308 Sum_probs=24.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEA 47 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~ 47 (287)
.+.|+||.|+||||+.+.|+..+.+....
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 67 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSPSHGE 67 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCCSSCE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 58899999999999999999887554333
No 293
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.18 E-value=0.0042 Score=49.61 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMV 49 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 49 (287)
.|.|.|++|||||++++.||+.+ +.+++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~l---g~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHY---NIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT---TCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHh---CcCEE
Confidence 69999999999999999999999 55544
No 294
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=96.18 E-value=0.067 Score=41.83 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++++|++|+|||++++.+....
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 369999999999999999776643
No 295
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.17 E-value=0.0024 Score=55.71 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=23.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|.||+|+||||+.++|+....+.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCC
Confidence 58999999999999999999987543
No 296
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.17 E-value=0.0021 Score=54.04 Aligned_cols=26 Identities=27% Similarity=0.197 Sum_probs=22.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+||||+.+.|+..+.+.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~ 61 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPS 61 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCC
Confidence 58999999999999999999877443
No 297
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.17 E-value=0.0021 Score=53.45 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+||||+.+.|+..+.+.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 68999999999999999999887443
No 298
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.14 E-value=0.0022 Score=53.51 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+|||||.+.|+..+.+.
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Confidence 68999999999999999999887543
No 299
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.13 E-value=0.0018 Score=58.08 Aligned_cols=38 Identities=29% Similarity=0.234 Sum_probs=30.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
+++++|++|+||||++..|+..+...+.....+++..+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 69999999999999999999988544566677776544
No 300
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.13 E-value=0.0023 Score=52.91 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||+|+||||+.+.|+..+.+.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 58999999999999999999887443
No 301
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.12 E-value=0.0023 Score=52.59 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+||||+.+.|+..+.+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 58999999999999999999877443
No 302
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.11 E-value=0.0056 Score=52.64 Aligned_cols=37 Identities=30% Similarity=0.300 Sum_probs=29.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC------CCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS------KEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~------~~~~~~~~~~~ 55 (287)
.++|+||||+|||+++..++...... +...++++...
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 69999999999999999999875332 45677777755
No 303
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.11 E-value=0.0022 Score=51.80 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+||||+.+.|+..+.+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 48899999999999999999877443
No 304
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.10 E-value=0.0043 Score=54.10 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=29.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.+.|+|+||+||||++..|+..+...+..+..+++.
T Consensus 81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 699999999999999999998885555666555554
No 305
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.08 E-value=0.0025 Score=52.01 Aligned_cols=26 Identities=35% Similarity=0.325 Sum_probs=22.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+||||+.+.|+..+.+.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~ 61 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPS 61 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 58899999999999999999887443
No 306
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.07 E-value=0.0029 Score=55.57 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=23.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||+|+||||+.+.|+....+.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~ 56 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETIT 56 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCC
Confidence 58999999999999999999887543
No 307
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.07 E-value=0.0027 Score=53.25 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=23.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+|||||.+.|+..+.+.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 58999999999999999999887443
No 308
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.07 E-value=0.0051 Score=47.31 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=23.1
Q ss_pred CCCCcEEEEEeccCCChHHHHHHHHHHHh
Q 047225 13 PNRPISSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 13 ~~~~~~~ill~Gp~GtGKT~la~~la~~l 41 (287)
|......++++|++|+|||++++.+....
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCc
Confidence 33333469999999999999999998763
No 309
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.05 E-value=0.0045 Score=57.18 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=29.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
..++|+|++|+||||+++.|++.+...+.++..++..
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 3699999999999999999999885444555555543
No 310
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.03 E-value=0.0032 Score=54.85 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|.||+|+|||||.+.|+..+.+.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~ 68 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPT 68 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 58899999999999999999887443
No 311
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.02 E-value=0.0027 Score=53.45 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=23.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+|||||.+.|+..+.+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 58899999999999999999887543
No 312
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.02 E-value=0.0032 Score=54.93 Aligned_cols=26 Identities=35% Similarity=0.360 Sum_probs=22.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|.||+|+||||+.+.|+....+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKPT 56 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCCC
Confidence 58899999999999999999887443
No 313
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.02 E-value=0.0028 Score=52.71 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|.||.|+|||||.+.|+..+.+.
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 68999999999999999999877443
No 314
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.02 E-value=0.11 Score=44.23 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=22.9
Q ss_pred CCCCcEEEEEeccCCChHHHHHHHHHHH
Q 047225 13 PNRPISSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 13 ~~~~~~~ill~Gp~GtGKT~la~~la~~ 40 (287)
+..|.+.+.++|.||+|||||...+...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3445567999999999999999998754
No 315
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.01 E-value=0.0028 Score=50.96 Aligned_cols=26 Identities=38% Similarity=0.336 Sum_probs=22.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSK 45 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~ 45 (287)
.+.|+||.|+|||||.+.++.. .+..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl-~p~~ 49 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ-ALQS 49 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH-HHHT
T ss_pred EEEEECCCCCCHHHHHHHHhcC-CCcC
Confidence 5889999999999999999987 4433
No 316
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.01 E-value=0.0033 Score=54.94 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
.+.|.||+|+||||+.+.|+..+.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p 55 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKP 55 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCchHHHHHHHHhcCCCC
Confidence 5899999999999999999988744
No 317
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.98 E-value=0.005 Score=53.85 Aligned_cols=33 Identities=33% Similarity=0.443 Sum_probs=26.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEec
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRID 52 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 52 (287)
.++|+||+|+||||++++|+..+.... -.+.++
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~~-g~I~ie 209 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFDQ-RLITIE 209 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTTS-CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCCc-eEEEEC
Confidence 699999999999999999999875433 334443
No 318
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.98 E-value=0.0034 Score=51.48 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|+||+|+||||+.+.|+..+.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998764
No 319
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.96 E-value=0.003 Score=54.93 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|.||+|+|||||.+.|+....+.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p~ 53 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVPD 53 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCccHHHHHHHHHcCCCCC
Confidence 58999999999999999999887443
No 320
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.96 E-value=0.0035 Score=54.95 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
.+.|.||+|+|||||.+.|+..+.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred EEEEECCCCChHHHHHHHHHcCCCC
Confidence 5899999999999999999987744
No 321
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.95 E-value=0.0054 Score=54.17 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=30.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.|++++||+|+|||++++.+...+...+..++.+|..
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4799999999999999999998876666677777653
No 322
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=95.94 E-value=0.015 Score=51.97 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=14.6
Q ss_pred EEEEeccCCChHHHHH
Q 047225 19 SFLFTGPTGVGKTELA 34 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la 34 (287)
++++.||+|+|||..+
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6999999999999865
No 323
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.94 E-value=0.0033 Score=52.52 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=22.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
.+.|+||.|+||||+.+.|+..+.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p 59 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEP 59 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Confidence 6889999999999999999987744
No 324
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.94 E-value=0.0059 Score=49.74 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=21.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+-|.|+||+||||.++.|++.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999988
No 325
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.93 E-value=0.0037 Score=54.85 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=23.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|.||+|+|||||.+.|+..+.+.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCCC
Confidence 58999999999999999999887443
No 326
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.92 E-value=0.021 Score=51.45 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=20.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+||+|+|||+|++.++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58999999999999999998775
No 327
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.92 E-value=0.0088 Score=52.02 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=28.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCC------CCceEEecccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGS------KEAMVRIDMSE 55 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~------~~~~~~~~~~~ 55 (287)
..+.|+||+|+|||++++.++...... +...++++...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 369999999999999999999886211 23556776643
No 328
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.91 E-value=0.005 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|.|++|+||||+++.|++.+
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 59999999999999999999988
No 329
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.91 E-value=0.0068 Score=47.12 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
..+|+||.|+|||+++++|.-.+.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5899999999999999999988854
No 330
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.90 E-value=0.0057 Score=47.06 Aligned_cols=24 Identities=29% Similarity=0.446 Sum_probs=21.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++++|++|+|||++++.+...-
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 469999999999999999887654
No 331
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.88 E-value=0.0031 Score=52.32 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=23.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+||||+.+.|+..+.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p~ 58 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRPI 58 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 58899999999999999999887543
No 332
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.86 E-value=0.0047 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.+.|+||.|+||||+.+.|+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999986
No 333
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.86 E-value=0.0052 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
..+.|+||+|+|||||++.|+..+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999998743
No 334
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.85 E-value=0.0066 Score=55.40 Aligned_cols=38 Identities=26% Similarity=0.330 Sum_probs=30.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
..++|+|++|+||||++..|+..+...+.....+++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 37999999999999999999988855455666666643
No 335
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.83 E-value=0.0077 Score=52.13 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=25.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCce
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAM 48 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~ 48 (287)
..+.|+||||+||||+.+.++..+...+..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v 86 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKV 86 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence 3699999999999999999998875444444
No 336
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.82 E-value=0.0033 Score=53.66 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=22.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||+|+||||+++.|+..+.+.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCS
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCC
Confidence 68999999999999999999877443
No 337
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.81 E-value=0.0037 Score=51.71 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=23.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||.|+|||||.+.|+..+.+.
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 58999999999999999999887543
No 338
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.80 E-value=0.0093 Score=51.06 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=29.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.+++.|+||+|||+++..++......+.+..++++.
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 699999999999999999987764445667777765
No 339
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.78 E-value=0.011 Score=52.83 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=32.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
..++++|++|+||||++..|+..+...+..+..+++..+
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 368899999999999999999999766777777776543
No 340
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.78 E-value=0.005 Score=47.27 Aligned_cols=29 Identities=31% Similarity=0.634 Sum_probs=21.6
Q ss_pred CCCCCCcEEEEEeccCCChHHHHHHHHHHH
Q 047225 11 RDPNRPISSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 11 ~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 40 (287)
.+|-+.. .++++|++|+|||+++..+...
T Consensus 9 ~~~~~~~-~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 9 GNPLRKF-KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp ---CEEE-EEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCCcce-EEEEECCCCCCHHHHHHHHHcC
Confidence 3443334 5999999999999999999754
No 341
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.78 E-value=0.0056 Score=51.15 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.+.|+||.|+|||||.+.|+..
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999986
No 342
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.77 E-value=0.0056 Score=47.32 Aligned_cols=31 Identities=26% Similarity=0.416 Sum_probs=23.1
Q ss_pred ccCCCCCCCcEEEEEeccCCChHHHHHHHHHH
Q 047225 8 VGIRDPNRPISSFLFTGPTGVGKTELANALAF 39 (287)
Q Consensus 8 ~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 39 (287)
..+..|.++. .++++|++|+|||++...+..
T Consensus 10 ~~~~~~~~~~-~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 10 DKLWGSNKEL-RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp GGGTTCSSCE-EEEEEEETTSSHHHHHHHTCC
T ss_pred HHhcCCCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3333434444 699999999999999988863
No 343
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.77 E-value=0.0076 Score=51.12 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=30.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
..+.++|++|+||||++..|+..+...+..+..+++..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 36889999999999999999998865566666666543
No 344
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.77 E-value=0.0053 Score=48.26 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+|++|+||||+.+.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998765
No 345
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.77 E-value=0.0031 Score=54.96 Aligned_cols=26 Identities=35% Similarity=0.419 Sum_probs=22.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||+|+|||||.+.|+....+.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p~ 58 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVPS 58 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCS
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 58999999999999999999877443
No 346
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.76 E-value=0.0041 Score=51.90 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSK 45 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~ 45 (287)
.+.|.||.|+||||+.+.|+..+ +..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~ 57 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-PYS 57 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-CCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCC
Confidence 58999999999999999999887 543
No 347
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.75 E-value=0.0061 Score=48.10 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=21.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+|++|+||||+.+.+....
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998764
No 348
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.75 E-value=0.0076 Score=46.81 Aligned_cols=31 Identities=32% Similarity=0.431 Sum_probs=23.6
Q ss_pred cCCCCCCCcEEEEEeccCCChHHHHHHHHHHH
Q 047225 9 GIRDPNRPISSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 9 ~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 40 (287)
....|.+.. .++++|++|+|||++.+.+...
T Consensus 9 ~~~~~~~~~-ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 9 LKSAPDQEV-RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CSSCCSSCE-EEEEEESTTSSHHHHHHHHCCS
T ss_pred HhccCCCce-EEEEECCCCCCHHHHHHHHhcC
Confidence 333344444 6999999999999999988653
No 349
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.73 E-value=0.014 Score=48.04 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=30.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
..+++.|.+|+||||++..++..+. .+.....+++..
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 4699999999999999999999887 666776666543
No 350
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.72 E-value=0.076 Score=53.43 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=23.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDM 53 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~ 53 (287)
+++++||+|+|||..+-..+......+...+.+-.
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvP 660 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 660 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECS
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEec
Confidence 69999999999998876554433333444444433
No 351
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.007 Score=47.28 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||+++..+....
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999998754
No 352
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.72 E-value=0.0051 Score=51.19 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|+||.|+|||||.+.|+..+.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 689999999999999999998763
No 353
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.71 E-value=0.0063 Score=49.55 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=19.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
.|.|.|++|+||||+++.|++.+..
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5999999999999999999998843
No 354
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.69 E-value=0.0084 Score=49.12 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=25.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEA 47 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~ 47 (287)
.+.|.|++|+||||+++.|++.+...+.+
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 59999999999999999999998554444
No 355
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.68 E-value=0.007 Score=45.86 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998754
No 356
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.66 E-value=0.008 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998653
No 357
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.63 E-value=0.01 Score=45.86 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=22.4
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHh
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.-.++++|++|+|||++++.+....
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCC
Confidence 334469999999999999999998654
No 358
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.62 E-value=0.011 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||+++..+...-
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999997643
No 359
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.61 E-value=0.0059 Score=53.28 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||+|+|||||.++|+..+.+.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p~ 81 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERPT 81 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCCC
Confidence 58999999999999999999877443
No 360
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.61 E-value=0.0085 Score=46.85 Aligned_cols=32 Identities=31% Similarity=0.365 Sum_probs=25.7
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
++++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCC
Confidence 689999999999999999865 34566766644
No 361
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.60 E-value=0.014 Score=46.65 Aligned_cols=24 Identities=25% Similarity=0.169 Sum_probs=22.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.++|+|++|+||||++..++..+.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 699999999999999999998863
No 362
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.60 E-value=0.0098 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=22.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.|.+.|++|||||++++.||+.+
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHc
Confidence 69999999999999999999998
No 363
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.59 E-value=0.0082 Score=47.99 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=21.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+|++|+|||+++..+....
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999998765
No 364
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.56 E-value=0.0086 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++++|++|+|||++.+.+...-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999997643
No 365
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.55 E-value=0.0079 Score=45.90 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.+.|+|++|+|||++.+.+...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999864
No 366
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.53 E-value=0.0099 Score=46.14 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++|+|++|+|||++.+.+...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999863
No 367
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.53 E-value=0.012 Score=51.18 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=24.0
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHhcCCC
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEYFGSK 45 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l~~~~ 45 (287)
...+.|+|+||+||||+...|...+...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~ 102 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERG 102 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcC
Confidence 34799999999999999999998764333
No 368
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.52 E-value=0.004 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.|+|.|++|+||||+++.|++.+
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 69999999999999999999987
No 369
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.52 E-value=0.0099 Score=45.39 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++|++|+|||++++.+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6999999999999999998754
No 370
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.50 E-value=0.0087 Score=45.93 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~ 40 (287)
..++++|++|+|||++++.+...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999998653
No 371
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.50 E-value=0.011 Score=55.64 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
..++.||||||||+++..+...+.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999998877777664
No 372
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.48 E-value=0.0092 Score=45.02 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999987654
No 373
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.48 E-value=0.009 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 59999999999999999998654
No 374
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.47 E-value=0.0074 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=21.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|.||+|+||||+.+.|+..+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 58999999999999999999865
No 375
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=95.47 E-value=0.022 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=18.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
+.++.+|+|+|||.++-.++...
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHHH
Confidence 46789999999999987776654
No 376
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.47 E-value=0.0064 Score=47.34 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEeccCCChHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAF 39 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~ 39 (287)
.++++|++|+|||+|++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999976
No 377
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.45 E-value=0.012 Score=44.32 Aligned_cols=23 Identities=26% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999998653
No 378
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.45 E-value=0.046 Score=42.43 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||+|++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 69999999999999998887655
No 379
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.44 E-value=0.041 Score=48.30 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=27.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC--CCCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG--SKEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~--~~~~~~~~~~~~ 55 (287)
.++++||+|+|||++++.|++.+.. .+..++++-+++
T Consensus 176 r~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE 214 (422)
T 3ice_A 176 RGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 214 (422)
T ss_dssp EEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS
T ss_pred EEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecC
Confidence 6999999999999999999987622 234455554444
No 380
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.44 E-value=0.011 Score=45.24 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 69999999999999999998643
No 381
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.43 E-value=0.0082 Score=46.52 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++|.|++|+|||+++..+.+.
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 4999999999999999999874
No 382
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.43 E-value=0.011 Score=46.72 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++++|++|+|||++++.+...-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999997654
No 383
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.42 E-value=0.044 Score=44.10 Aligned_cols=29 Identities=31% Similarity=0.623 Sum_probs=20.8
Q ss_pred CCCCCcEEEEEeccCCChHHHHHHHHHHHh
Q 047225 12 DPNRPISSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 12 ~~~~~~~~ill~Gp~GtGKT~la~~la~~l 41 (287)
+|-+.. -++|+|.+|+|||+|+..+...-
T Consensus 9 ~P~k~~-KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 9 NPLRKF-KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp ----CE-EEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCCcE-EEEEECcCCcCHHHHHHHHHhCC
Confidence 344444 49999999999999999887543
No 384
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.42 E-value=0.0098 Score=48.52 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=25.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh-cCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEY-FGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l-~~~~~~~~~~~~~ 54 (287)
.+++.|+||+|||+++..++... ...+.+..+++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 69999999999999998876542 2224456666554
No 385
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.41 E-value=0.011 Score=45.98 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~ 40 (287)
..++++|++|+|||+++..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999998765
No 386
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.40 E-value=0.012 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|.||+|+|||||.+.|+ ...
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hhh
Confidence 58999999999999999999 653
No 387
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.40 E-value=0.01 Score=44.96 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=20.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++.+.+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 59999999999999999987654
No 388
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.39 E-value=0.0099 Score=46.43 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++|++|+|||++...+...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999998754
No 389
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.39 E-value=0.02 Score=46.02 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
.++++|++|+|||+++..++.....
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 6999999999999999999988643
No 390
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.39 E-value=0.013 Score=47.58 Aligned_cols=31 Identities=29% Similarity=0.188 Sum_probs=25.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC-CCCceE
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG-SKEAMV 49 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~-~~~~~~ 49 (287)
.+.|.|++|+||||+++.|++.+.. .+..++
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~ 54 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGVNNV 54 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCceee
Confidence 6999999999999999999998854 343443
No 391
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=95.38 E-value=0.025 Score=54.24 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=21.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||.|+||||+.+.++...
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhh
Confidence 58999999999999999998765
No 392
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.38 E-value=0.011 Score=45.63 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.3
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++|+|++|+|||+|.+.+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999864
No 393
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.34 E-value=0.011 Score=44.86 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++.+.+...-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998754
No 394
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.33 E-value=0.011 Score=44.91 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 59999999999999999997543
No 395
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.32 E-value=0.011 Score=46.20 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 69999999999999999988754
No 396
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.32 E-value=0.011 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||+++..+...-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 69999999999999999997654
No 397
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.31 E-value=0.014 Score=45.97 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++++|++|+|||+++..+...-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999987654
No 398
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.29 E-value=0.012 Score=45.76 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
-.++++|++|+|||+++..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 369999999999999999998654
No 399
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.28 E-value=0.008 Score=48.87 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=21.1
Q ss_pred EEEEEeccCCChHHHHHHHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~ 40 (287)
..+.|.|+.|+||||+++.|+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46999999999999999999876
No 400
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.27 E-value=0.012 Score=44.75 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++.+.+...-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998653
No 401
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.27 E-value=0.015 Score=49.78 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++|+||||+|||+++..++...
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 369999999999999999998763
No 402
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.27 E-value=0.013 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.1
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++++|++|+|||++++.+...-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 469999999999999999998654
No 403
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.26 E-value=0.0058 Score=55.21 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|+||.|+|||||++.|+....
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTTH
T ss_pred EEEEECCCCCCHHHHHHHHhCccc
Confidence 599999999999999999998763
No 404
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.26 E-value=0.012 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=20.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++.+.+...-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999998643
No 405
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=95.25 E-value=0.0088 Score=50.58 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|+||.|+||||+.+.|+..+.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 589999999999999999998763
No 406
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.24 E-value=0.016 Score=44.86 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.1
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++++|++|+|||++++.+...-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998654
No 407
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.23 E-value=0.011 Score=44.91 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++|++|+|||++++.+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999864
No 408
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.23 E-value=0.012 Score=44.74 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.1
Q ss_pred EEEEeccCCChHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAF 39 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~ 39 (287)
.++++|++|+|||++++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999864
No 409
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.22 E-value=0.011 Score=51.23 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=26.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEec
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRID 52 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~ 52 (287)
..+.++|++|+||||++..|+..+...+..+..++
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 36999999999999999999987743344443333
No 410
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.22 E-value=0.013 Score=44.29 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++...+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999997654
No 411
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.20 E-value=0.012 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=23.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
.+.|.|++|+||||.++.|++.+..
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5999999999999999999999943
No 412
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.20 E-value=0.013 Score=44.38 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999998643
No 413
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.20 E-value=0.013 Score=46.72 Aligned_cols=23 Identities=35% Similarity=0.314 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||+++..+....
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998654
No 414
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.19 E-value=0.015 Score=45.47 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++.+.+...-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 69999999999999999998643
No 415
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.18 E-value=0.015 Score=52.60 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=24.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKE 46 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~ 46 (287)
.+.|+||+|+||||+.++|+..+.+...
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred eEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 6899999999999999999998855433
No 416
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.17 E-value=0.011 Score=44.70 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=19.0
Q ss_pred EEEEeccCCChHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAF 39 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~ 39 (287)
.++++|++|+|||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 599999999999999998864
No 417
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.15 E-value=0.013 Score=45.42 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999998643
No 418
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.14 E-value=0.017 Score=45.10 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||+++..+...-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999998764
No 419
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.13 E-value=0.019 Score=43.55 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++...+...-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999997643
No 420
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.13 E-value=0.013 Score=47.25 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=24.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKE 46 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~ 46 (287)
.|.|.|++|+||||.++.|++.+...+.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999854443
No 421
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.12 E-value=0.015 Score=50.41 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=23.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||+|+||||+.+.|+......
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 58999999999999999999998543
No 422
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.09 E-value=0.019 Score=44.69 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
-.++|+|++|+|||++++.+....
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999998777654
No 423
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.06 E-value=0.017 Score=45.78 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.0
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCCceE
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKEAMV 49 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 49 (287)
|.|-|+.|+||||.++.|++.+...+.+++
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~ 32 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVI 32 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEE
Confidence 678999999999999999999865555544
No 424
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.05 E-value=0.016 Score=44.82 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||+++..+...-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999998654
No 425
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.05 E-value=0.046 Score=49.21 Aligned_cols=23 Identities=39% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+++.+|+|+|||..+-.++...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 48999999999999887777766
No 426
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.05 E-value=0.015 Score=44.47 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++++|++|+|||++++.+...-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998654
No 427
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.04 E-value=0.019 Score=43.33 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
..+|+||.|+|||++..+|.-.+.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5899999999999999999877743
No 428
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.04 E-value=0.014 Score=44.88 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=20.0
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++|++|+|||+++..+...
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999854
No 429
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.04 E-value=0.017 Score=49.83 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=29.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.+++.|+||+|||+++..++......+.++.++++.
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 699999999999999999988775455666666654
No 430
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.03 E-value=0.015 Score=45.16 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999998754
No 431
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.02 E-value=0.015 Score=47.32 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++|+|++|+|||+++..+....
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCC
Confidence 469999999999999999998654
No 432
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.01 E-value=0.03 Score=52.09 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=19.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+++++|+|+|||.++-.++..+
T Consensus 200 ~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 200 RSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEecCCCChHHHHHHHHHHH
Confidence 58999999999999877777665
No 433
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.01 E-value=0.021 Score=46.12 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=20.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~ 40 (287)
..++++|++|+|||+++..+...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999998754
No 434
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.00 E-value=0.014 Score=51.96 Aligned_cols=24 Identities=33% Similarity=0.322 Sum_probs=21.8
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..+.|+||+|+||||+.++|+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 379999999999999999999865
No 435
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.99 E-value=0.018 Score=44.82 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
-.++++|++|+|||++++.+...-
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999987643
No 436
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.98 E-value=0.017 Score=51.78 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=23.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.|+||+|+|||||.+.|+......
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC
Confidence 58999999999999999999998543
No 437
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.97 E-value=0.041 Score=49.29 Aligned_cols=16 Identities=25% Similarity=0.247 Sum_probs=14.5
Q ss_pred EEEEeccCCChHHHHH
Q 047225 19 SFLFTGPTGVGKTELA 34 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la 34 (287)
++++.||+|+|||..+
T Consensus 10 ~vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 10 TTVLDFHPGAGKTRRF 25 (440)
T ss_dssp EEEECCCTTSSTTTTH
T ss_pred CEEEEcCCCCCHHHHH
Confidence 6999999999999864
No 438
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.96 E-value=0.016 Score=45.35 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCcEEEEEeccCCChHHHHHHHHHHHh
Q 047225 15 RPISSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 15 ~~~~~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+...++++|++|+|||+++..+...-
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 334569999999999999999887543
No 439
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.95 E-value=0.019 Score=44.17 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++.+.+...-
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999987643
No 440
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.94 E-value=0.018 Score=45.39 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.3
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++|+|++|+|||++++.+...-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 369999999999999999998754
No 441
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.94 E-value=0.018 Score=45.80 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.4
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++++|++|+|||++++.+...-
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 442
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.94 E-value=0.01 Score=47.13 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.2
Q ss_pred EEEEEeccCCChHHHHHHHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~ 40 (287)
..+.|+|++|+||||+.+.+...
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999988754
No 443
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.91 E-value=0.015 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=19.8
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++|++|+|||++...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999998764
No 444
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.91 E-value=0.012 Score=52.41 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
++.|+||+|+|||||.+.|+...
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 38999999999999999998763
No 445
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.90 E-value=0.017 Score=44.35 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999988653
No 446
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.88 E-value=0.017 Score=48.17 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.+.|+|++|+||||+.+.+...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999764
No 447
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=94.87 E-value=0.036 Score=50.45 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++||+|+|||..+-.++...
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHHHH
Confidence 58999999999999886666554
No 448
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.87 E-value=0.017 Score=45.19 Aligned_cols=22 Identities=36% Similarity=0.536 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++|++|+|||++.+.+...
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 449
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.86 E-value=0.022 Score=55.06 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG 43 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~ 43 (287)
..++.||||||||+++..+...+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999988877776643
No 450
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.85 E-value=0.016 Score=45.92 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+....
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 69999999999999999987654
No 451
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.85 E-value=0.012 Score=50.03 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=21.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
.+.|.||+|+||||+.++|+....
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 588999999999999999987663
No 452
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.85 E-value=0.018 Score=44.35 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++.+.+....
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 59999999999999999987643
No 453
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.84 E-value=0.016 Score=50.52 Aligned_cols=23 Identities=43% Similarity=0.541 Sum_probs=20.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+.|+||+|+|||||++.|+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999998665
No 454
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.84 E-value=0.019 Score=53.52 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKE 46 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~ 46 (287)
.+.++||+|+||||+++.++..+.+...
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p~~G 398 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDVDSG 398 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 6899999999999999999998755433
No 455
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=94.82 E-value=0.017 Score=49.52 Aligned_cols=25 Identities=40% Similarity=0.448 Sum_probs=22.1
Q ss_pred cEEEEEeccCCChHHHHHHHHHHHh
Q 047225 17 ISSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~l 41 (287)
...+.|+|+.|+||||+.+.|....
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3479999999999999999999765
No 456
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=94.81 E-value=0.16 Score=34.93 Aligned_cols=81 Identities=21% Similarity=0.308 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCc---EEEeChhHHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHHHhccCCCC
Q 047225 183 QLNKMQLMEIVDIMLKEIYERLEAKNM---ELTVTHTFKKKLIEEGYNPSYGARPLRRAIGRLLEDNLAEIILTGYIQVG 259 (287)
Q Consensus 183 ~~~~~~~~~il~~~l~~~~~~~~~~~~---~~~i~~~~~~~l~~~~~~~~~~~r~l~~~i~~~~~~~~~~~~~~~~~~~~ 259 (287)
.++.+|-.+|.+.+|-. ..+..+|. .+.++++++..+... |....|+|.|++.+.+++..+..+...++. .
T Consensus 2 GYt~~EK~~IAk~~LiP--kql~~~GL~~~~~~i~d~al~~iI~~-YTREaGVRnLer~i~~i~RK~a~~i~~~~~---~ 75 (94)
T 1qzm_A 2 GYTEDEKLNIAKRHLLP--KQIERNALKKGELTVDDSAIIGIIRY-YTREAGVRGLEREISKLCRKAVKQLLLDKS---L 75 (94)
T ss_dssp CCCHHHHHHHHHHTHHH--HHHHHTTCCTTTEEECHHHHHHHHHH-HCCCSSSHHHHHHHHHHHHHHHHHHHTCTT---C
T ss_pred CCCHHHHHHHHHHhccH--HHHHHhCCChhhceECHHHHHHHHHH-hcccccchHHHHHHHHHHHHHHHHHHHcCC---C
Confidence 46788889999888743 33333333 499999999999986 778889999999999988877766543122 2
Q ss_pred CEEEEEEcCC
Q 047225 260 DSVTMDCDSG 269 (287)
Q Consensus 260 ~~~~i~~~~~ 269 (287)
.++.|+.++.
T Consensus 76 ~~v~v~~~~l 85 (94)
T 1qzm_A 76 KHIEINGDNL 85 (94)
T ss_dssp CCEEECTTTT
T ss_pred CCeeECHHHH
Confidence 3455554443
No 457
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.80 E-value=0.022 Score=44.65 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999998753
No 458
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.79 E-value=0.017 Score=44.96 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 69999999999999999998654
No 459
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.77 E-value=0.022 Score=44.30 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.0
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
-.++++|++|+|||++.+.+...-
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999998643
No 460
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.76 E-value=0.019 Score=47.37 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.9
Q ss_pred cEEEEEeccCCChHHHHHHHHHHH
Q 047225 17 ISSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 17 ~~~ill~Gp~GtGKT~la~~la~~ 40 (287)
...++|+|++|+|||++...+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999998754
No 461
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.74 E-value=0.019 Score=44.87 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 69999999999999999997654
No 462
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.74 E-value=0.0092 Score=48.55 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.2
Q ss_pred EEEeccCCChHHHHHHHHHHHhcCCCC
Q 047225 20 FLFTGPTGVGKTELANALAFEYFGSKE 46 (287)
Q Consensus 20 ill~Gp~GtGKT~la~~la~~l~~~~~ 46 (287)
+.|+||+|+||||+.++|+..+.+...
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred EEEECCCCCCHHHHHHHHhcccccCCC
Confidence 568999999999999999999865543
No 463
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.74 E-value=0.02 Score=44.62 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.4
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 59999999999999998887654
No 464
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.74 E-value=0.025 Score=44.06 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999998654
No 465
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.74 E-value=0.029 Score=43.58 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
-.++++|++|+|||++++.+...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 369999999999999999997654
No 466
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.72 E-value=0.065 Score=52.40 Aligned_cols=22 Identities=27% Similarity=0.449 Sum_probs=19.9
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++|+||.|+||||+.+.++..
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCchHHHHHHHHHH
Confidence 6999999999999999998754
No 467
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=94.71 E-value=0.017 Score=51.67 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=29.6
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEeccc
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMS 54 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~ 54 (287)
.|++++|++|+|||++++.+...+...+..++.+|..
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4799999999999999887777765556677777763
No 468
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=94.70 E-value=0.017 Score=45.49 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEEeccCCChHHHHHHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAF 39 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~ 39 (287)
..++++|++|+|||+|++.+..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999999853
No 469
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.69 E-value=0.02 Score=43.86 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.8
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999998754
No 470
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.69 E-value=0.024 Score=50.86 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=29.1
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcC-CCCceEEeccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFG-SKEAMVRIDMS 54 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~-~~~~~~~~~~~ 54 (287)
.+++.|+||+|||+++..++..... .+.+..++++.
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 6999999999999999999887643 35567777764
No 471
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.68 E-value=0.022 Score=44.55 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=19.7
Q ss_pred EEEEEeccCCChHHHHHHHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~ 40 (287)
..++++|++|+|||++++.+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999998754
No 472
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.68 E-value=0.026 Score=50.76 Aligned_cols=37 Identities=16% Similarity=0.129 Sum_probs=30.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
.+++.|+||+|||+++..++......+.+..++++..
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm 235 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM 235 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 6999999999999999999887744466777777654
No 473
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.022 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=21.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++|+|++|+|||++++.+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 59999999999999999998765
No 474
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.67 E-value=0.021 Score=44.51 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++++.+...-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 59999999999999999998643
No 475
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.66 E-value=0.021 Score=52.66 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=26.4
Q ss_pred CCCCCCCcEEEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 10 IRDPNRPISSFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 10 ~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
+..|.+. -.+.|+||.|+||||+.+.|+..+.+.
T Consensus 19 l~~~~~G-ei~gLiGpNGaGKSTLlkiL~Gl~~p~ 52 (538)
T 3ozx_A 19 LPTPKNN-TILGVLGKNGVGKTTVLKILAGEIIPN 52 (538)
T ss_dssp CCCCCTT-EEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred CCCCCCC-CEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 4444433 369999999999999999999877443
No 476
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=94.65 E-value=0.012 Score=50.08 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=30.9
Q ss_pred EEEEecc-CCChHHHHHHHHHHHhcCCCCceEEecccc
Q 047225 19 SFLFTGP-TGVGKTELANALAFEYFGSKEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp-~GtGKT~la~~la~~l~~~~~~~~~~~~~~ 55 (287)
.++++|+ +|+|||+++..||..+...+.....+|+..
T Consensus 106 vI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 106 ILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 6888886 799999999999998866677788888764
No 477
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.65 E-value=0.017 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.687 Sum_probs=19.4
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++||+|+|||||.+.|...
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998754
No 478
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.63 E-value=0.019 Score=45.16 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.5
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||+++..+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999987643
No 479
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.63 E-value=0.022 Score=44.50 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||++.+.+...-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 69999999999999999998754
No 480
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.63 E-value=0.018 Score=45.41 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.5
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++|++|+|||++++.+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999998754
No 481
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.62 E-value=0.024 Score=44.51 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=20.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHHh
Q 047225 18 SSFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l 41 (287)
..++++|++|+|||++++.+...-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 369999999999999999997643
No 482
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.62 E-value=0.021 Score=45.06 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.++++|++|+|||+++..+...-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 69999999999999999997654
No 483
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.60 E-value=0.11 Score=48.85 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=49.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHHhcCCCCceEEecccccccccchhhhhCCCCCCCcccchhhHHHHHHhCCcEEEEEcC
Q 047225 18 SSFLFTGPTGVGKTELANALAFEYFGSKEAMVRIDMSEYMEKHTVSKFFGSPPGYVGFENGGQLTEAVRHRPHSVILFDE 97 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~iDe 97 (287)
+...|+|+.|.|||+++..++..+.. .. .+..........+..+.+.. ..+.....+.. .....++|+|||
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~~---~~-~vtAP~~~a~~~l~~~~~~~---i~~~~Pd~~~~--~~~~~dlliVDE 263 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIAG---RA-IVTAPAKASTDVLAQFAGEK---FRFIAPDALLA--SDEQADWLVVDE 263 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSSS---CE-EEECSSCCSCHHHHHHHGGG---CCBCCHHHHHH--SCCCCSEEEEET
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHh---Cc-EEECCCHHHHHHHHHHhhCC---eEEeCchhhhh--CcccCCEEEEEc
Confidence 46899999999999999999988843 22 22222212112223332221 12211111111 122346999999
Q ss_pred cccccHHHHHHHHH
Q 047225 98 IEKAHRDVLNVMLQ 111 (287)
Q Consensus 98 id~~~~~~~~~L~~ 111 (287)
+-.++...+..|..
T Consensus 264 AAaIp~pll~~ll~ 277 (671)
T 2zpa_A 264 AAAIPAPLLHQLVS 277 (671)
T ss_dssp GGGSCHHHHHHHHT
T ss_pred hhcCCHHHHHHHHh
Confidence 99999988666665
No 484
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.57 E-value=0.027 Score=44.12 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEeccCCChHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAF 39 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~ 39 (287)
.++++|++|+|||+++..+..
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998853
No 485
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.57 E-value=0.032 Score=50.90 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=30.3
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC-CCceEEecccc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS-KEAMVRIDMSE 55 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~-~~~~~~~~~~~ 55 (287)
.+++.|+||+|||+++..++...... +.++.+++...
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~ 281 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE 281 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC
Confidence 69999999999999999999887554 56777777644
No 486
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.56 E-value=0.027 Score=43.64 Aligned_cols=22 Identities=18% Similarity=0.404 Sum_probs=20.0
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++|++|+|||++.+.+...
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999843
No 487
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.55 E-value=0.018 Score=47.72 Aligned_cols=22 Identities=41% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++|+|+||+|||++...+...
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999753
No 488
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.49 E-value=0.024 Score=45.28 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.9
Q ss_pred EEEEeccCCChHHHHHHHHHHHhc
Q 047225 19 SFLFTGPTGVGKTELANALAFEYF 42 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~ 42 (287)
-|.|-|+.|+||||.++.|++.+.
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999999984
No 489
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.48 E-value=0.027 Score=44.33 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=19.3
Q ss_pred EEEEeccCCChHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAF 39 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~ 39 (287)
.++++|++|+|||++.+.+..
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999864
No 490
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.48 E-value=0.022 Score=44.01 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEEeccCCChHHHHHHHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~ 40 (287)
..++++|++|+|||++.+.+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999754
No 491
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.48 E-value=0.017 Score=53.77 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=23.0
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.+.++||+|+||||+++.++..+.+.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~p~ 396 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYDID 396 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhhccCCC
Confidence 68999999999999999999887443
No 492
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.45 E-value=0.026 Score=43.61 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.0
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++|++|+|||++.+.+...
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999998754
No 493
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.44 E-value=0.017 Score=44.50 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=9.5
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++|++|+|||+++..+...
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988754
No 494
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.40 E-value=0.028 Score=44.14 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=19.9
Q ss_pred EEEEEeccCCChHHHHHHHHHHH
Q 047225 18 SSFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 18 ~~ill~Gp~GtGKT~la~~la~~ 40 (287)
..++++|++|+|||++.+.+...
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999998754
No 495
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.39 E-value=0.026 Score=44.62 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999998754
No 496
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=94.39 E-value=0.071 Score=50.47 Aligned_cols=15 Identities=27% Similarity=0.253 Sum_probs=14.0
Q ss_pred EEEEeccCCChHHHH
Q 047225 19 SFLFTGPTGVGKTEL 33 (287)
Q Consensus 19 ~ill~Gp~GtGKT~l 33 (287)
++++.||+|+|||..
T Consensus 243 dvlv~apTGSGKTl~ 257 (673)
T 2wv9_A 243 LTVLDLHPGAGKTRR 257 (673)
T ss_dssp EEEECCCTTTTTTTT
T ss_pred eEEEEeCCCCCHHHH
Confidence 699999999999986
No 497
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.36 E-value=0.025 Score=44.34 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=19.8
Q ss_pred EEEEeccCCChHHHHHHHHHHH
Q 047225 19 SFLFTGPTGVGKTELANALAFE 40 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~ 40 (287)
.++++|++|+|||+|...+...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999998753
No 498
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=94.36 E-value=0.027 Score=47.07 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=31.7
Q ss_pred EEEEEecc-CCChHHHHHHHHHHHhcCCCCceEEeccccc
Q 047225 18 SSFLFTGP-TGVGKTELANALAFEYFGSKEAMVRIDMSEY 56 (287)
Q Consensus 18 ~~ill~Gp-~GtGKT~la~~la~~l~~~~~~~~~~~~~~~ 56 (287)
..++++|+ +|+|||+++..||..+...+.+...+|+...
T Consensus 83 kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 83 QSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp CEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 36888876 7999999999999998666778888888643
No 499
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.33 E-value=0.028 Score=45.03 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEeccCCChHHHHHHHHHHHh
Q 047225 19 SFLFTGPTGVGKTELANALAFEY 41 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l 41 (287)
.+-|+|..||||||+++.+++ +
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~ 32 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-R 32 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-T
T ss_pred EEEEECCCCCCHHHHHHHHHH-C
Confidence 488999999999999999987 5
No 500
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.32 E-value=0.036 Score=48.45 Aligned_cols=26 Identities=38% Similarity=0.783 Sum_probs=22.7
Q ss_pred EEEEeccCCChHHHHHHHHHHHhcCC
Q 047225 19 SFLFTGPTGVGKTELANALAFEYFGS 44 (287)
Q Consensus 19 ~ill~Gp~GtGKT~la~~la~~l~~~ 44 (287)
.++|+||.|+||||+..+|+-.+++.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al~g~ 50 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFALFGN 50 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 57899999999999999999887543
Done!