BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047226
         (303 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of Non-Ribosomal
           Peptide Synthetase From Mycobacterium Tuberculosis
          Length = 478

 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 58/107 (54%), Gaps = 13/107 (12%)

Query: 19  LIEKILRTVPEVGKIFLLIKAESEEAASERLKN--EVINAELFKCIQQTYGECYHDFMLN 76
           L+ ++LR +   G++  L++AES+E A  RL+   +  + EL +  ++           +
Sbjct: 89  LVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKE--------LAAD 140

Query: 77  KLVPVIGNISESNLGLEGDLATVIANEVDVIINSAASI---TFHERY 120
           +L  V G+ SE +LGL+      +A  VD+I++SAA +    +HE +
Sbjct: 141 RLEVVAGDKSEPDLGLDQPXWRRLAETVDLIVDSAAXVNAFPYHELF 187


>pdb|2G17|A Chain A, The Structure Of N-Acetyl-Gamma-Glutamyl-Phosphate
           Reductase From Salmonella Typhimurium
          Length = 337

 Score = 27.7 bits (60), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 43  EAASERLKNEVINAELFKCIQQTYGECYHDFMLNKLVPVIGNI-----SESNLGLEGDLA 97
           E  + RLK  V +A++   +Q+ YG+     + +K VP + N+      +    ++G+  
Sbjct: 244 ETITCRLKAGVTHAQVADVLQKAYGDKPLVRLYDKGVPALKNVVGLPFCDIGFAVQGEHL 303

Query: 98  TVIANEVDVIINSAA 112
            V+A E +++  +AA
Sbjct: 304 IVVATEDNLLKGAAA 318


>pdb|2B3B|A Chain A, Thermus Thermophilus GlucoseGALACTOSE BINDING PROTEIN WITH
           Bound Glucose
 pdb|2B3B|B Chain B, Thermus Thermophilus GlucoseGALACTOSE BINDING PROTEIN WITH
           Bound Glucose
 pdb|2B3B|C Chain C, Thermus Thermophilus GlucoseGALACTOSE BINDING PROTEIN WITH
           Bound Glucose
 pdb|2B3B|D Chain D, Thermus Thermophilus GlucoseGALACTOSE BINDING PROTEIN WITH
           Bound Glucose
 pdb|2B3B|E Chain E, Thermus Thermophilus GlucoseGALACTOSE BINDING PROTEIN WITH
           Bound Glucose
 pdb|2B3B|F Chain F, Thermus Thermophilus GlucoseGALACTOSE BINDING PROTEIN WITH
           Bound Glucose
 pdb|2B3F|A Chain A, Thermus Thermophilus GlucoseGALACTOSE BINDING PROTEIN
           Bound With Galactose
 pdb|2B3F|B Chain B, Thermus Thermophilus GlucoseGALACTOSE BINDING PROTEIN
           Bound With Galactose
 pdb|2B3F|C Chain C, Thermus Thermophilus GlucoseGALACTOSE BINDING PROTEIN
           Bound With Galactose
 pdb|2B3F|D Chain D, Thermus Thermophilus GlucoseGALACTOSE BINDING PROTEIN
           Bound With Galactose
 pdb|2B3F|E Chain E, Thermus Thermophilus GlucoseGALACTOSE BINDING PROTEIN
           Bound With Galactose
 pdb|2B3F|F Chain F, Thermus Thermophilus GlucoseGALACTOSE BINDING PROTEIN
           Bound With Galactose
          Length = 400

 Score = 27.7 bits (60), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)

Query: 271 WIEGNRMLDLIVSYYGKGQLNGFVGDPSGIIDL 303
           W+  NRM DL   +  +G L  F   P G+IDL
Sbjct: 75  WVVANRMEDLSALFRQEGWLQAF---PKGLIDL 104


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,454,270
Number of Sequences: 62578
Number of extensions: 264518
Number of successful extensions: 768
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 6
length of query: 303
length of database: 14,973,337
effective HSP length: 98
effective length of query: 205
effective length of database: 8,840,693
effective search space: 1812342065
effective search space used: 1812342065
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)