BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047227
(485 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase)
From Streptomyces Venezuelae With Nad And Tyd Bound
Length = 337
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 87/358 (24%), Positives = 144/358 (40%), Gaps = 52/358 (14%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+VTGG GF H V L+ V ++ +L + L R +V D
Sbjct: 4 LVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGD 63
Query: 71 LRHKAQVLQALQGAEVVFHMAAP---NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127
+R + + L+G + + H AA + SI + NV+GT+ ++ + V R++
Sbjct: 64 IRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVV 123
Query: 128 YTSSPSVVFDGVHGIIN-GNEALPYPPKHNDFYSATKAEGEALVIKA-NGTNGLLTCCIR 185
+ S+ D V+G I+ G+ P + N Y+A+KA G LV +A + T GL R
Sbjct: 124 HVST-----DEVYGSIDSGSWTESSPLEPNSPYAASKA-GSDLVARAYHRTYGLDVRITR 177
Query: 186 PSSIFGPGD--RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243
+ +GP L+P V G + + GDG NV ++ + + H R +A
Sbjct: 178 CCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD--HC-----RGIA-- 228
Query: 244 VTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRL 303
+ +A AG+ Y + + E ++L+ LG ++
Sbjct: 229 LVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVR------------------- 269
Query: 304 LGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361
KV +R + D K + LGY P V +G+ RTV Y R
Sbjct: 270 ------KVADRKGHDLRY-----SLDGGKIERELGYRPQVSFADGLARTVRWYRENRG 316
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 123/286 (43%), Gaps = 41/286 (14%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
VVTGG GF HLV+ L+ V + +LS SGR +V+
Sbjct: 4 VVTGGAGFIGSHLVDKLVELGYEVVVVDNLS-------------------SGRREFVNPS 44
Query: 71 LRHKAQVLQ------ALQGAEVVFHMAA-PNSSINNHK--LHHSVNVEGTKNVIDACAEL 121
+ L+ ++G +VVFH AA P ++ + +H + NV T NV++ +
Sbjct: 45 AELHVRDLKDYSWGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQT 103
Query: 122 KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLT 181
V+ +++ SS +V D +I E PY P Y A KA GE + G+
Sbjct: 104 GVRTVVFASSSTVYGDA--DVIPTPEEEPYKPI--SVYGAAKAAGEVMCATYARLFGVRC 159
Query: 182 CCIRPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA 239
+R +++ GP R ++ ++ R ++GDG + YV + A + A +
Sbjct: 160 LAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKK 219
Query: 240 LASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKI 285
A A V N+++++ + ++ E LG RP I++
Sbjct: 220 FEE-----MDAPFLALNVGNVDAVRVLDIAQIVAEVLGL-RPEIRL 259
>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose
4,6- Dehydratase) From Streptomyces Venezuelae With Nad
And Dau Bound
Length = 337
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 86/358 (24%), Positives = 144/358 (40%), Gaps = 52/358 (14%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
+VTGG GF H V L+ V ++ +L + L R +V D
Sbjct: 4 LVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGD 63
Query: 71 LRHKAQVLQALQGAEVVFHMAAP---NSSINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127
+R + + L+G + + H AA + SI + NV+GT+ ++ + V R++
Sbjct: 64 IRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVV 123
Query: 128 YTSSPSVVFDGVHGIIN-GNEALPYPPKHNDFYSATKAEGEALVIKA-NGTNGLLTCCIR 185
+ S+ + V+G I+ G+ P + N Y+A+KA G LV +A + T GL R
Sbjct: 124 HVST-----NQVYGSIDSGSWTESSPLEPNSPYAASKA-GSDLVARAYHRTYGLDVRITR 177
Query: 186 PSSIFGPGD--RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243
+ +GP L+P V G + + GDG NV ++ + + H R +A
Sbjct: 178 CCNNYGPYQHPEKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDD--HC-----RGIA-- 228
Query: 244 VTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMVELTYRL 303
+ +A AG+ Y + + E ++L+ LG ++
Sbjct: 229 LVLAGGRAGEIYHIGGGLELTNRELTGILLDSLGADWSSVR------------------- 269
Query: 304 LGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYSHLRA 361
KV +R + D K + LGY P V +G+ RTV Y R
Sbjct: 270 ------KVADRKGHDLRY-----SLDGGKIERELGYRPQVSFADGLARTVRWYRENRG 316
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 119/282 (42%), Gaps = 37/282 (13%)
Query: 11 VVTGGRGFAARHLVEMLIR--YDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVS 68
VVTGG GF HLV+ L+ Y++ V I + E H
Sbjct: 4 VVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVR----------------- 46
Query: 69 FDLRHKAQVLQALQGAEVVFHMAA-PNSSINNHK--LHHSVNVEGTKNVIDACAELKVKR 125
DL+ + A +VVFH AA P ++ + +H + NV T NV++ + V+
Sbjct: 47 -DLKDYS--WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRT 103
Query: 126 LIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCIR 185
+++ SS +V D +I E PY P Y A KA GE + G+ +R
Sbjct: 104 VVFASSSTVYGDA--DVIPTPEEEPYKPIS--VYGAAKAAGEVMCATYARLFGVRCLAVR 159
Query: 186 PSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERALASE 243
+++ GP R ++ ++ R ++GDG + YV + A + A +
Sbjct: 160 YANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEE- 218
Query: 244 VTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKI 285
A A V N+++++ + ++ E LG RP I++
Sbjct: 219 ----MDAPFLALNVGNVDAVRVLDIAQIVAEVLGL-RPEIRL 255
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 28/248 (11%)
Query: 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYV 67
++ ++TG GF +L+E L++ D V + + + E + ++ E S ++
Sbjct: 28 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWS-NFKFI 86
Query: 68 SFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELKVK 124
D+R+ A G + V H AA S SIN+ ++ N++G N++ A + KV+
Sbjct: 87 QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ 146
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDF-------YSATKAEGEALVIKANGTN 177
Y +S S G H P PK D Y+ TK E +
Sbjct: 147 SFTYAASSSTY--GDH---------PGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY 195
Query: 178 GLLTCCIRPSSIFG----PGDRL--LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAH 231
G T +R ++FG P ++P ++ G +I GDG DF Y+ N
Sbjct: 196 GFSTIGLRYFNVFGRRQDPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQ 255
Query: 232 AHICAERA 239
A++ A A
Sbjct: 256 ANLLAATA 263
>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli
pdb|1BXK|B Chain B, Dtdp-Glucose 4,6-Dehydratase From E. Coli
Length = 355
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 149/382 (39%), Gaps = 63/382 (16%)
Query: 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIAD----LSDSIALEPHEEQGILGEALRSGR 63
R ++TGG GF LV +I +V + D + ++L P +S R
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAP---------VAQSER 52
Query: 64 AHYVSFDLRHKAQVLQAL--QGAEVVFHMAAP---NSSINNHKLHHSVNVEGTKNVIDAC 118
+ D+ +A++ + + V H+AA + SI+ N+ GT +++A
Sbjct: 53 FAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEA- 111
Query: 119 AELKVKRLIYTSSPSVVF-----DGVHGIINGN-----EALPYPPKHNDFYSATKAEGEA 168
A L + F D V+G ++ E PY P YSA+KA +
Sbjct: 112 ARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSP--YSASKASSDH 169
Query: 169 LVIKANGTNGLLTCCIRPSSIFGPGD--RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYV 226
LV T GL T S+ +GP L+P ++ A AGKS + G+G + D+ YV
Sbjct: 170 LVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKSLPVYGNGQQIRDWLYV 229
Query: 227 ANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIP 286
+ A A C A +V G +++ E + +LE L +P
Sbjct: 230 EDHARALYCV--ATTGKVGETYNIGGH----NERKNLDVVETICELLEELAPNKPH---- 279
Query: 287 AFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLE 346
+AH YR L + P D SK LG +P E
Sbjct: 280 -----GVAH-----YRDLITFVADRPG--------HDLRYAIDASKIARELGCVPQETFE 321
Query: 347 EGIKRTVDSYSHLRAENQLKRV 368
G+++TV Y L E+ K+V
Sbjct: 322 SGMRKTVQWY--LANESWWKQV 341
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 88/359 (24%), Positives = 146/359 (40%), Gaps = 65/359 (18%)
Query: 10 CVVTGGRGFAARHLVEMLIRY--DMFSVRIADL---SDSIALEPHEEQGILGEALRSGRA 64
+VTGG GF + + ++ D + I L S+ L+ E+ R
Sbjct: 6 LLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDP---------RY 56
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAP---NSSINNHKLHHSVNVEGTKNVIDACA-E 120
+V D+ V + ++ + V H+AA + SI++ ++ NV GT ++++ E
Sbjct: 57 TFVKGDVADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRE 116
Query: 121 LKVKRLIYTSSPSVVFDGVHGIINGNEAL-PYPPKHNDFYSATKAEGEALVIKANGTNGL 179
R ++ S+ V D + G N+ L P P YSATKA + LV+ T L
Sbjct: 117 NPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSP-----YSATKAASDMLVLGWTRTYNL 171
Query: 180 LTCCIRPSSIFGPGD--RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAE 237
R ++ +GP L+P + A G I G G NV D+ YV + H+
Sbjct: 172 NASITRCTNNYGPYQFPEKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVED----HV--- 224
Query: 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMV 297
RA+ E+ + + + + Y ++ E E V +IL
Sbjct: 225 RAI--ELVLLKGESREIYNISAGEEKTNLEVVKIIL------------------------ 258
Query: 298 ELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSY 356
RL+G G ++ +L R + D K L + P +EGIK+T+D Y
Sbjct: 259 ----RLMGK-GEELIELVEDRPG-HDLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWY 311
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 117/306 (38%), Gaps = 52/306 (16%)
Query: 63 RAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACA 119
R ++ D+R Q ++G + V H AA S SI + ++ N+ G N++ A
Sbjct: 80 RFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAK 139
Query: 120 ELKVKRLIYTSSPSVVFDGVHGI---INGNEALPYPPKHNDFYSATKAEGEALVIKANGT 176
+V+ Y +S S G H + N P P Y+ TK E T
Sbjct: 140 NAQVQSFTYAASSSTY--GDHPALPKVEENIGNPLSP-----YAVTKYVNEIYAQVYART 192
Query: 177 NGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVA 230
G T +R ++FG ++P AA G +I GDG DF Y+ NV
Sbjct: 193 YGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVI 252
Query: 231 HAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVM 290
+I + ALA + A Y V + E I + L
Sbjct: 253 QMNILS--ALAK-----DSAKDNIYNVAVGDRTTLNELSGYIYDELNL------------ 293
Query: 291 MPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIK 350
I H+ +L+ +K + VR + D +KA DLL Y P + + EG++
Sbjct: 294 --IHHIDKLS--------IKYREFRSGDVR----ASQADVTKAIDLLKYRPNIKIREGLR 339
Query: 351 RTVDSY 356
++ Y
Sbjct: 340 LSMPWY 345
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 116/306 (37%), Gaps = 52/306 (16%)
Query: 63 RAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACA 119
R ++ D+R Q ++G + V H AA S SI + ++ N+ G N++ A
Sbjct: 80 RFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAK 139
Query: 120 ELKVKRLIYTSSPSVVFDGVHGI---INGNEALPYPPKHNDFYSATKAEGEALVIKANGT 176
+V+ Y +S S G H + N P P Y+ TK E T
Sbjct: 140 NAQVQSFTYAASSSTY--GDHPALPKVEENIGNPLSP-----YAVTKYVNEIYAQVYART 192
Query: 177 NGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVA 230
G T +R ++FG ++P AA G +I GDG DF Y+ NV
Sbjct: 193 YGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVI 252
Query: 231 HAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVM 290
+I + ALA + A Y V + E I + L
Sbjct: 253 QMNILS--ALAK-----DSAKDNIYNVAVGDRTTLNELSGYIYDELNL------------ 293
Query: 291 MPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIK 350
I H+ +L+ +K + VR D +KA DLL Y P + + EG++
Sbjct: 294 --IHHIDKLS--------IKYREFRSGDVRHSQA----DVTKAIDLLKYRPNIKIREGLR 339
Query: 351 RTVDSY 356
++ Y
Sbjct: 340 LSMPWY 345
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/306 (24%), Positives = 116/306 (37%), Gaps = 52/306 (16%)
Query: 63 RAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACA 119
R ++ D+R Q ++G + V H AA S SI + ++ N+ G N++ A
Sbjct: 74 RFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAK 133
Query: 120 ELKVKRLIYTSSPSVVFDGVHGI---INGNEALPYPPKHNDFYSATKAEGEALVIKANGT 176
+V+ Y +S S G H + N P P Y+ TK E T
Sbjct: 134 NAQVQSFTYAASSSTY--GDHPALPKVEENIGNPLSP-----YAVTKYVNEIYAQVYART 186
Query: 177 NGLLTCCIRPSSIFGPGDR------LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVA 230
G T +R ++FG ++P AA G +I GDG DF Y+ NV
Sbjct: 187 YGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVI 246
Query: 231 HAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVM 290
+I + ALA + A Y V + E I + L
Sbjct: 247 QMNILS--ALAK-----DSAKDNIYNVAVGDRTTLNELSGYIYDELNL------------ 287
Query: 291 MPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIK 350
I H+ +L+ +K + VR D +KA DLL Y P + + EG++
Sbjct: 288 --IHHIDKLS--------IKYREFRSGDVRHSQA----DVTKAIDLLKYRPNIKIREGLR 333
Query: 351 RTVDSY 356
++ Y
Sbjct: 334 LSMPWY 339
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 117/306 (38%), Gaps = 52/306 (16%)
Query: 63 RAHYVSFDLRHKAQVLQALQGAEVVFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACA 119
R ++ D+R Q ++G + V H AA S SI + ++ N+ G N++ A
Sbjct: 93 RFCFIEGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAK 152
Query: 120 ELKVKRLIYTSSPSVVFDGVHGI---INGNEALPYPPKHNDFYSATKAEGEALVIKANGT 176
+V+ Y +S S G H + N P P Y+ TK E T
Sbjct: 153 NAQVQSFTYAASSSTY--GDHPALPKVEENIGNPLSP-----YAVTKYVNEIYAQVYART 205
Query: 177 NGLLTCCIRPSSIFG----PGDRL--LVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVA 230
G T +R ++FG P ++P AA G +I GDG DF Y+ NV
Sbjct: 206 YGFKTIGLRYFNVFGRRQDPNGAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVI 265
Query: 231 HAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVM 290
+I + ALA + A Y V + E I + L
Sbjct: 266 QMNILS--ALAK-----DSAKDNIYNVAVGDRTTLNELSGYIYDELNL------------ 306
Query: 291 MPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIK 350
I H+ +L+ +K + VR D +KA DLL Y P + + EG++
Sbjct: 307 --IHHIDKLS--------IKYREFRSGDVRHSQA----DVTKAIDLLKYRPNIKIREGLR 352
Query: 351 RTVDSY 356
++ Y
Sbjct: 353 LSMPWY 358
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 33/244 (13%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEE--QGILGEALRSGRAHYV 67
+VTGG GF H+VE L+ + +A L D++A E +G+ +
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGL---EVAVL-DNLATGKRENVPKGV----------PFF 48
Query: 68 SFDLRHKAQVLQALQGAEV--VFHMAAPNS---SINNHKLHHSVNVEGTKNVIDACAELK 122
DLR K V +A + V H AA S S+ + L VN+ G N+++AC +
Sbjct: 49 RVDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYG 108
Query: 123 VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTC 182
V++L++ S+ ++ V E +PP+ Y+A+KA E + + GL
Sbjct: 109 VEKLVFASTGGAIYGEVPEGERAEET--WPPRPKSPYAASKAAFEHYLSVYGQSYGLKWV 166
Query: 183 CIRPSSIFGP-----GDRLLVPSLVAAARAG-----KSKFIIGDGNNVYDFTYVANVAHA 232
+R +++GP G+ +V G ++ GD V D+ YV +VA A
Sbjct: 167 SLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEA 226
Query: 233 HICA 236
H A
Sbjct: 227 HALA 230
>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|C Chain C, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1G1A|D Chain D, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb)from Salmonella Enterica Serovar Typhimurium
pdb|1KEU|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEU|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Dtdp-D-Glucose Bound
pdb|1KEW|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
pdb|1KEW|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Salmonella Enterica Serovar Typhimurium With
Thymidine Diphosphate Bound
Length = 361
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 92/371 (24%), Positives = 147/371 (39%), Gaps = 65/371 (17%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSV-RIADLSDSIALEPHEEQGILGEALRSGRAHYVSF 69
++TGG GF +V +I+ +V I L+ + LE L + S R ++
Sbjct: 4 LITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLES------LSDISESNRYNFEHA 57
Query: 70 DLRHKAQVLQALQG--AEVVFHMAAP---NSSINNHKLHHSVNVEGTKNVID-------A 117
D+ A++ + + + V H+AA + SI N+ GT +++ A
Sbjct: 58 DICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSA 117
Query: 118 CAELKVK--RLIYTSSPSVVFDGVH-GIINGNEALP-------YPPKHNDFYSATKAEGE 167
E K R + S+ V D H + + LP Y P + YSA+KA +
Sbjct: 118 LGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAP--SSPYSASKASSD 175
Query: 168 ALVIKANGTNGLLTCCIRPSSIFGPGD--RLLVPSLVAAARAGKSKFIIGDGNNVYDFTY 225
LV T GL T S+ +GP L+P ++ A GK I G G+ + D+ Y
Sbjct: 176 HLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYGKGDQIRDWLY 235
Query: 226 VANVAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKI 285
V + A RAL + V E AG+ Y + K + V I + L P+
Sbjct: 236 VEDHA-------RAL--HMVVTEGKAGETYNIGGHNEKKNLDVVFTICDLLDEIVPK--- 283
Query: 286 PAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPL 345
++ ++TY P R + D K LG+ P+
Sbjct: 284 ------ATSYREQITY----------VADRPGHDRRYA----IDAGKISRELGWKPLETF 323
Query: 346 EEGIKRTVDSY 356
E GI++TV+ Y
Sbjct: 324 ESGIRKTVEWY 334
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 109/237 (45%), Gaps = 25/237 (10%)
Query: 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVS 68
L VVTGG GF H+V+ L + V I +LS +EE + EA R +A +
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSESNEIVV-IDNLSSG-----NEE--FVNEAARLVKADLAA 54
Query: 69 FDLRHKAQVLQALQGAEVVFHMAA-PNSSI---NNHKLHHSVNVEGTKNVIDACAELKVK 124
D++ L+GAE V+H+AA P+ I N +++ + NV T +++A + V
Sbjct: 55 DDIK------DYLKGAEEVWHIAANPDVRIGAENPDEIYRN-NVLATYRLLEAMRKAGVS 107
Query: 125 RLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI 184
R+++TS+ +V G +I E P P Y A+K EAL+ T +
Sbjct: 108 RIVFTSTSTVY--GEAKVIPTPEDYPTHPIS--LYGASKLACEALIESYCHTFDMQAWIY 163
Query: 185 RPSSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHICAERA 239
R +++ G ++ ++ R + I+G+G + Y+++ A + R
Sbjct: 164 RFANVIGRRSTHGVIYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRG 220
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 154/388 (39%), Gaps = 72/388 (18%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+TG GF A H+ L +++ V +D + H + E + H V DL
Sbjct: 34 ITGAGGFIASHIARRL-KHEGHYVIASDWKKN----EH-----MTEDMFCDEFHLV--DL 81
Query: 72 RHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSV----NVEGTKNVIDACAELKVKRLI 127
R L+ +G + VF++AA + + +HSV N + N+I+A +KR
Sbjct: 82 RVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFF 141
Query: 128 YTSSPSVV--FDGVHGI-INGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI 184
Y SS + F + ++ E+ +P + D Y K E L N G+
Sbjct: 142 YASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIG 201
Query: 185 RPSSIFGP-----GDRLLVP-SLVAAARAGKSKF-IIGDGNNVYDFTYVANVAHAHICAE 237
R +I+GP G R P + A+ +F + GDG FT++ C E
Sbjct: 202 RFHNIYGPFGTWKGGREAAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE------CVE 255
Query: 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMV 297
L + + + + + E + E ++ L ++ + +PI H
Sbjct: 256 GVL----RLTKSDFREPVNIGSDEMVSMNEMAEMV---LSFEEKK--------LPIHH-- 298
Query: 298 ELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357
+ GP G++ R D + K+ LG+ P + L+EG++ T Y
Sbjct: 299 -----IPGPEGVR--------------GRNSDNNLIKEKLGWAPNMRLKEGLRIT---YF 336
Query: 358 HLRAENQLKRVGPSKASVLLGSGRVADT 385
++ + + ++ S S L GS +V T
Sbjct: 337 WIKEQIEKEKAKGSDVS-LYGSSKVVGT 363
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 88/388 (22%), Positives = 154/388 (39%), Gaps = 72/388 (18%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+TG GF A H+ L +++ V +D + H + E + H V DL
Sbjct: 34 ITGAGGFIASHIARRL-KHEGHYVIASDWKKN----EH-----MTEDMFCDEFHLV--DL 81
Query: 72 RHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSV----NVEGTKNVIDACAELKVKRLI 127
R L+ +G + VF++AA + + +HSV N + N+I+A +KR
Sbjct: 82 RVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFF 141
Query: 128 YTSSPSVV--FDGVHGI-INGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI 184
Y SS + F + ++ E+ +P + D Y K E L N G+
Sbjct: 142 YASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIG 201
Query: 185 RPSSIFGP-----GDRLLVP-SLVAAARAGKSKF-IIGDGNNVYDFTYVANVAHAHICAE 237
R +I+GP G R P + A+ +F + GDG FT++ C E
Sbjct: 202 RFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE------CVE 255
Query: 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMV 297
L + + + + + E + E ++ L ++ + +PI H
Sbjct: 256 GVL----RLTKSDFREPVNIGSDEMVSMNEMAEMV---LSFEEKK--------LPIHH-- 298
Query: 298 ELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357
+ GP G++ R D + K+ LG+ P + L+EG++ T Y
Sbjct: 299 -----IPGPEGVR--------------GRNSDNNLIKEKLGWAPNMRLKEGLRIT---YF 336
Query: 358 HLRAENQLKRVGPSKASVLLGSGRVADT 385
++ + + ++ S S L GS +V T
Sbjct: 337 WIKEQIEKEKAKGSDVS-LYGSSKVVGT 363
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 121/298 (40%), Gaps = 42/298 (14%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDM---FSVRIADLSDSIA--LEPHEEQGILGEALRSGRA 64
CVV GG GF A LV++L++ +VR D ++ LE E LG+ L+ RA
Sbjct: 13 CVV-GGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQE----LGD-LKIFRA 66
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVN--VEGTKNVIDACAELK 122
DL + + G + VFH+A P + + + ++G NV+ AC K
Sbjct: 67 -----DLTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAK 121
Query: 123 -VKRLIYTSSPSVV----FDGVHGIINGNE-------ALPYPPKHNDFYSATKAEGEALV 170
VKR+I TSS + V DG +++ PP Y A+K E
Sbjct: 122 SVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWG--YPASKTLAEKAA 179
Query: 171 IKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARA--GKSKFIIGDGNNVYDFTYVAN 228
K N + + P+ + G VPS + A + ++F+I + + +
Sbjct: 180 WKFAEENNIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVS 239
Query: 229 VAHAHICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIP 286
+AH E + + VAEK + ++ + E L + P+ K+P
Sbjct: 240 IAH----VEDVCRAHIFVAEKESASGRYICCAANTSVPELAKF----LSKRYPQYKVP 289
>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
pdb|3VPS|B Chain B, Structure Of A Novel Nad Dependent-Ndp-Hexosamine
5,6-Dehydratase, Tuna, Involved In Tunicamycin
Biosynthesis
Length = 321
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 107/257 (41%), Gaps = 29/257 (11%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++TGG GF HL L+ + DL + P L + + +
Sbjct: 11 LITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPV---------LE 61
Query: 71 LRHKAQVLQALQGAEVVFHMAAPNSSINNHK--LHHSVNVEGTKNVIDACAELKVKRLIY 128
L + L +V+H+A+ S + K L + NV+ ++++ C + V +++
Sbjct: 62 LEERD-----LSDVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVV 116
Query: 129 TSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLL--TCCIRP 186
S+ V G + E P P+ Y+A+K G +V A+ + +R
Sbjct: 117 GSTCEVY--GQADTLPTPEDSPLSPRSP--YAASKV-GLEMVAGAHQRASVAPEVGIVRF 171
Query: 187 SSIFGPGDR--LLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAHIC-AERALASE 243
+++GPG+R LVP L A + GDG DFTY+ +V + A R L S
Sbjct: 172 FNVYGPGERPDALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLPSV 231
Query: 244 VTVAEKAAGQAYFVTNM 260
V +GQ+ V ++
Sbjct: 232 VNF---GSGQSLSVNDV 245
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 154/388 (39%), Gaps = 72/388 (18%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+TG GF A H+ L +++ V +D + H + E + H V DL
Sbjct: 34 ITGAGGFIASHIARRL-KHEGHYVIASDWKKN----EH-----MTEDMFCDEFHLV--DL 81
Query: 72 RHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSV----NVEGTKNVIDACAELKVKRLI 127
R L+ +G + VF++AA + + +HSV N + N+I+A +KR
Sbjct: 82 RVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFF 141
Query: 128 YTSSPSVV--FDGVHGI-INGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI 184
Y SS + F + ++ E+ +P + D Y + E L N G+
Sbjct: 142 YASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLERLATEELCKHYNKDFGIECRIG 201
Query: 185 RPSSIFGP-----GDRLLVP-SLVAAARAGKSKF-IIGDGNNVYDFTYVANVAHAHICAE 237
R +I+GP G R P + A+ +F + GDG FT++ C E
Sbjct: 202 RFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE------CVE 255
Query: 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMV 297
L + + + + + E + E ++ L ++ + +PI H
Sbjct: 256 GVL----RLTKSDFREPVNIGSDEMVSMNEMAEMV---LSFEEKK--------LPIHH-- 298
Query: 298 ELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357
+ GP G++ R D + K+ LG+ P + L+EG++ T Y
Sbjct: 299 -----IPGPEGVR--------------GRNSDNNLIKEKLGWAPNMRLKEGLRIT---YF 336
Query: 358 HLRAENQLKRVGPSKASVLLGSGRVADT 385
++ + + ++ S S L GS +V T
Sbjct: 337 WIKEQIEKEKAKGSDVS-LYGSSKVVGT 363
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 87/388 (22%), Positives = 154/388 (39%), Gaps = 72/388 (18%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
+TG GF A H+ L +++ V +D + H + E + H V DL
Sbjct: 34 ITGAGGFIASHIARRL-KHEGHYVIASDWKKN----EH-----MTEDMFCDEFHLV--DL 81
Query: 72 RHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSV----NVEGTKNVIDACAELKVKRLI 127
R L+ +G + VF++AA + + +HSV N + N+I+A +KR
Sbjct: 82 RVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFF 141
Query: 128 YTSSPSVV--FDGVHGI-INGNEALPYPPKHNDFYSATKAEGEALVIKANGTNGLLTCCI 184
Y SS + F + ++ E+ +P + D + K E L N G+
Sbjct: 142 YASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIG 201
Query: 185 RPSSIFGP-----GDRLLVP-SLVAAARAGKSKF-IIGDGNNVYDFTYVANVAHAHICAE 237
R +I+GP G R P + A+ +F + GDG FT++ C E
Sbjct: 202 RFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDE------CVE 255
Query: 238 RALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMPIAHMV 297
L + + + + + E + E ++ L ++ + +PI H
Sbjct: 256 GVL----RLTKSDFREPVNIGSDEMVSMNEMAEMV---LSFEEKK--------LPIHH-- 298
Query: 298 ELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKRTVDSYS 357
+ GP G++ R D + K+ LG+ P + L+EG++ T Y
Sbjct: 299 -----IPGPEGVR--------------GRNSDNNLIKEKLGWAPNMRLKEGLRIT---YF 336
Query: 358 HLRAENQLKRVGPSKASVLLGSGRVADT 385
++ + + ++ S S L GS +V T
Sbjct: 337 WIKEQIEKEKAKGSDVS-LYGSSKVVGT 363
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 8 RLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGI---LGEALRSGRA 64
R+CV TGG GF +++ L+ + +SV +I +P ++ + S +
Sbjct: 3 RVCV-TGGTGFLGSWIIKSLLE-NGYSVNT-----TIRADPERKRDVSFLTNLPGASEKL 55
Query: 65 HYVSFDLRHKAQVLQALQGAEVVFHMAAP-NSSINN-HKLHHSVNVEGTKNVIDACAELK 122
H+ + DL + A++G +FH A+P + +++ ++ V+G ++ AC K
Sbjct: 56 HFFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSK 115
Query: 123 -VKRLIYTSSPSVV-FDG 138
VKR IYTSS S V F+G
Sbjct: 116 TVKRFIYTSSGSAVSFNG 133
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 34/242 (14%)
Query: 4 EENERLCVVTGGRGFAARHLVEMLIR-YDMFSVRIAD-------LSDSIALEPHEEQGIL 55
+ N +VTGG GF + V ++ Y+ + + D L++ +++ H +
Sbjct: 21 QSNAXNILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFV 80
Query: 56 GEALRSGRAHYVSFDLRHKAQVLQALQGAEVVFHMAAP---NSSINNHKLHHSVNVEGTK 112
+++G L H V++ + +V+ + AA + SI N + NV GT
Sbjct: 81 KGEIQNGEL------LEH---VIKE-RDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTV 130
Query: 113 NVIDACAELKVKRLIYTSSPSVVFDGVHGIINGN----EALPYPPKHNDFYSATKAEGEA 168
+++ + +L+ S+ D V+G + E P P N YS++KA +
Sbjct: 131 TLLELVKKYPHIKLVQVST-----DEVYGSLGKTGRFTEETPLAP--NSPYSSSKASADX 183
Query: 169 LVIKANGTNGLLTCCIRPSSIFGPGD--RLLVPSLVAAARAGKSKFIIGDGNNVYDFTYV 226
+ + T L R S+ +GP L+P V A GK + GDG NV D+ +V
Sbjct: 184 IALAYYKTYQLPVIVTRCSNNYGPYQYPEKLIPLXVTNALEGKKLPLYGDGLNVRDWLHV 243
Query: 227 AN 228
+
Sbjct: 244 TD 245
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 82/386 (21%), Positives = 141/386 (36%), Gaps = 93/386 (24%)
Query: 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGR 63
E++ + ++TGG GF HL + L+ D V + D +GR
Sbjct: 2 EKDRKRILITGGAGFVGSHLTDKLM-MDGHEVTVVD------------------NFFTGR 42
Query: 64 A----HYV---SFDLRHKAQVLQALQGAEVVFHMAAPNSSIN---NHKLHHSVNVEGTKN 113
H++ +F+L + V + ++H+A+P S N N N GT N
Sbjct: 43 KRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLN 102
Query: 114 VIDACAELKVKRLIYTSSPSVVFDGVH-------GIINGNEALPYPPKHNDFYSATKAEG 166
++ + + L+ ++S VH G +N P P+ Y K
Sbjct: 103 MLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVN-----PIGPR--ACYDEGKRVA 155
Query: 167 EALVIKANGTNGLLTCCIRPSSIFGP----GDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222
E + G+ R + FGP D +V + + A G+ + G G+
Sbjct: 156 ETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGRVVSNFILQALQGEPLTVYGSGSQTRA 215
Query: 223 FTYVANVAHAHICAERA-LASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRP 281
F YV+++ + + + ++S V + N E EF LI +G
Sbjct: 216 FQYVSDLVNGLVALMNSNVSSPVNLG-----------NPEEHTILEFAQLIKNLVGSGS- 263
Query: 282 RIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMP 341
E+ + + Q P + R D KAK +LG+ P
Sbjct: 264 ----------------EIQF-------LSEAQDDPQK-------RKPDIKKAKLMLGWEP 293
Query: 342 IVPLEEGIKRTVDSYS---HLRAENQ 364
+VPLEEG+ + + + +A NQ
Sbjct: 294 VVPLEEGLNKAIHYFRKELEYQANNQ 319
>pdb|4ID9|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4ID9|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 1
pdb|4IDG|A Chain A, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
pdb|4IDG|B Chain B, Crystal Structure Of A Short-Chain DehydrogenaseREDUCTASE
SUPERFAMILY Protein From Agrobacterium Tumefaciens
(Target Efi-506441) With Bound Nad, Monoclinic Form 2
Length = 347
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 73/182 (40%), Gaps = 29/182 (15%)
Query: 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVS 68
+ +VTG G R +V L R +VR DL S G GE V
Sbjct: 21 MILVTGSAGRVGRAVVAAL-RTQGRTVRGFDLRPS---------GTGGEE--------VV 62
Query: 69 FDLRHKAQVLQALQGAEVVFHMAAPNS-SINNHKLHHSVNVEGTKNVIDACAELKVKRLI 127
L + A+ G V H+ A S + + +VNVEGT+ ++DA + V+R +
Sbjct: 63 GSLEDGQALSDAIMGVSAVLHLGAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFV 122
Query: 128 YTSSPSVVFDGVHGIINGNEALPYPPKH----NDFYSATKAEGEALVIKANGTNGLLTCC 183
+ SS V + N E LP H N Y TK GE LV + + T
Sbjct: 123 FASSGEVYPE------NRPEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSGAMETVI 176
Query: 184 IR 185
+R
Sbjct: 177 LR 178
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 104/280 (37%), Gaps = 35/280 (12%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-----SGRA- 64
+VTGG G+ H V L+ V I + ++ G L E+LR +GR+
Sbjct: 6 LVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAF-----RGGGSLPESLRRVQELTGRSV 60
Query: 65 HYVSFDLRHKAQVLQALQGAE--VVFHMA---APNSSINNHKLHHSVNVEGTKNVIDACA 119
+ D+ + + + + V H A A S+ ++ VN+ GT +++
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 120 ELKVKRLIYTSSPSVV-------FDGVH---GIIN--GNEALPYPPKHNDFYSATKAEGE 167
VK L+++SS +V D H G N G D A K
Sbjct: 121 AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNA 180
Query: 168 ALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK-----SKFIIGDGNNVYD 222
L+ N T + CI P + + S VA R + + DG V D
Sbjct: 181 VLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD 240
Query: 223 FTYVANVAHAHICAERALASE--VTVAEKAAGQAYFVTNM 260
+ +V ++A HI A R L + + G Y V M
Sbjct: 241 YIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQM 280
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 104/280 (37%), Gaps = 35/280 (12%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-----SGRA- 64
+VTGG G+ H V L+ V I + ++ G L E+LR +GR+
Sbjct: 6 LVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAF-----RGGGSLPESLRRVQELTGRSV 60
Query: 65 HYVSFDLRHKAQVLQALQGAE--VVFHMA---APNSSINNHKLHHSVNVEGTKNVIDACA 119
+ D+ + + + + V H A A S+ ++ VN+ GT +++
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 120 ELKVKRLIYTSSPSVV-------FDGVH---GIIN--GNEALPYPPKHNDFYSATKAEGE 167
VK L+++SS +V D H G N G D A K
Sbjct: 121 AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNV 180
Query: 168 ALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK-----SKFIIGDGNNVYD 222
L+ N T + CI P + + S VA R + + DG V D
Sbjct: 181 VLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD 240
Query: 223 FTYVANVAHAHICAERALASE--VTVAEKAAGQAYFVTNM 260
+ +V ++A HI A R L + + G Y V M
Sbjct: 241 YIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQM 280
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/280 (23%), Positives = 104/280 (37%), Gaps = 35/280 (12%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR-----SGRA- 64
+VTGG G+ H V L+ V I + ++ G L E+LR +GR+
Sbjct: 6 LVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAF-----RGGGSLPESLRRVQELTGRSV 60
Query: 65 HYVSFDLRHKAQVLQALQGAE--VVFHMA---APNSSINNHKLHHSVNVEGTKNVIDACA 119
+ D+ + + + + V H A A S+ ++ VN+ GT +++
Sbjct: 61 EFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMK 120
Query: 120 ELKVKRLIYTSSPSVV-------FDGVH---GIIN--GNEALPYPPKHNDFYSATKAEGE 167
VK L+++SS +V D H G N G D A K
Sbjct: 121 AHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQADKTWNV 180
Query: 168 ALVIKANGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGK-----SKFIIGDGNNVYD 222
L+ N T + CI P + + S VA R + + DG V D
Sbjct: 181 VLLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRD 240
Query: 223 FTYVANVAHAHICAERALASE--VTVAEKAAGQAYFVTNM 260
+ +V ++A HI A R L + + G Y V M
Sbjct: 241 YIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQM 280
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 27/245 (11%)
Query: 117 ACAELKVKRLIYTSSPSVVFDGVHGIINGNEALPY---PPKHNDFYSATKAEGEALVIKA 173
AC + +V R++Y S + G+ G+E L Y P + + A E +
Sbjct: 112 ACLQARVPRILYVGSAYAMPRHPQGL-PGHEGLFYDSLPSGKSSYVLCKWALDEQ--ARE 168
Query: 174 NGTNGLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFIIGDGNNVYDFTYVANVAHAH 233
NGL P + G L G+ IG+G + YVA +
Sbjct: 169 QARNGLPVVIGIPGMVLG--------ELDIGPTTGRVITAIGNGEMTH---YVAGQRNVI 217
Query: 234 ICAERALASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMP- 292
AE + + G+ Y +T +++ + I E LG P+ P + M
Sbjct: 218 DAAEAGRGLLMALERGRIGERYLLTG-HNLEMADLTRRIAELLGQPAPQ---PMSMAMAR 273
Query: 293 -IAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMPIVPLEEGIKR 351
+A + L YR+ G ++P L + + +++ + D KA++ LG+ L++ + R
Sbjct: 274 ALATLGRLRYRVSG----QLPLLDETAIEVMAGGQFLDGRKAREELGFFSTTALDDTLLR 329
Query: 352 TVDSY 356
+D +
Sbjct: 330 AIDWF 334
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 12/138 (8%)
Query: 3 GEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSG 62
G ++E +CV TG GF LV L+ ++VR A + D ++ + + +L L
Sbjct: 2 GSQSETVCV-TGASGFIGSWLVMRLLERG-YTVR-ATVRDPTNVK--KVKHLLD--LPKA 54
Query: 63 RAHYVSF--DLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSV--NVEGTKNVIDAC 118
H + DL + +A++G VFH+A P + + + +EG ++ +C
Sbjct: 55 ETHLTLWKADLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSC 114
Query: 119 AELK-VKRLIYTSSPSVV 135
A K V+RL++TSS V
Sbjct: 115 AAAKTVRRLVFTSSAGTV 132
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 82/386 (21%), Positives = 137/386 (35%), Gaps = 93/386 (24%)
Query: 4 EENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGR 63
E++ + ++TGG GF HL + L D V + D +GR
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLXX-DGHEVTVVD------------------NFFTGR 64
Query: 64 ----AHYV---SFDLRHKAQVLQALQGAEVVFHMAAPNSSIN---NHKLHHSVNVEGTKN 113
H++ +F+L + V + ++H+A+P S N N N GT N
Sbjct: 65 KRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLN 124
Query: 114 VIDACAELKVKRLIYTSSPSVVFDGVH-------GIINGNEALPYPPKHNDFYSATKAEG 166
+ + + L+ ++S VH G +N P P+ Y K
Sbjct: 125 XLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVN-----PIGPR--ACYDEGKRVA 177
Query: 167 EALVIKANGTNGLLTCCIRPSSIFGP----GDRLLVPSLVAAARAGKSKFIIGDGNNVYD 222
E G+ R + FGP D +V + + A G+ + G G+
Sbjct: 178 ETXCYAYXKQEGVEVRVARIFNTFGPRXHXNDGRVVSNFILQALQGEPLTVYGSGSQTRA 237
Query: 223 FTYVANVAHAHICAERA-LASEVTVAEKAAGQAYFVTNMESIKFWEFVSLILEGLGYQRP 281
F YV+++ + + + ++S V + N E EF LI +G
Sbjct: 238 FQYVSDLVNGLVALXNSNVSSPVNLG-----------NPEEHTILEFAQLIKNLVG---- 282
Query: 282 RIKIPAFVMMPIAHMVELTYRLLGPYGMKVPQLTPSRVRLLSCSRTFDCSKAKDLLGYMP 341
E+ + + Q P + R D KAK LG+ P
Sbjct: 283 -------------SGSEIQF-------LSEAQDDPQK-------RKPDIKKAKLXLGWEP 315
Query: 342 IVPLEEGIKRTVDSYS---HLRAENQ 364
+VPLEEG+ + + + +A NQ
Sbjct: 316 VVPLEEGLNKAIHYFRKELEYQANNQ 341
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 76/177 (42%), Gaps = 23/177 (12%)
Query: 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHY-V 67
L +VTG GF A H+VE L+ + + VR S S + +A GR V
Sbjct: 13 LVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKRW----DAKYPGRFETAV 67
Query: 68 SFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAEL-KVKRL 126
D+ + + ++GA V H+A+ S N + + + GT N + A A VKR
Sbjct: 68 VEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRF 127
Query: 127 IYTSS------PSVVFDGVH--------GIINGNEALPY--PPKHNDFYSATKAEGE 167
+ TSS P +G++ I+ + LP P K Y+A+K E E
Sbjct: 128 VLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAE 184
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/258 (22%), Positives = 101/258 (39%), Gaps = 49/258 (18%)
Query: 10 CVVTGGRGFAARHLVEMLIRYDMFSVRIAD---LSDSIALEPH-----EEQGILGEALRS 61
+V GG GF +LV+ L+ + V + D ++ I + H E I +AL
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDAL-- 92
Query: 62 GRAHYVSFDLRHKAQVLQALQGA-EVVFHMA---APNSSINNHKLHHSVNVEGTKNVIDA 117
L +LQ + VFH+A SSI++ H N T + +
Sbjct: 93 ----------------LASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYER 136
Query: 118 CAELK-VKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDF--YSATKAEGEALVIKAN 174
K +K+++Y+++ + + E HN+ YS +K GE + +
Sbjct: 137 LKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYH 196
Query: 175 GTNGLLTCCIRPSSIFGPGD---------------RLLVPSLVAAARAGKSKFIIGDGNN 219
+ L T R +++GPG+ R + P+ + A G + G
Sbjct: 197 KQHQLPTVRARFQNVYGPGEILGAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVA 256
Query: 220 VYDFTYVANVAHAHI-CA 236
DF +V +VA+ I CA
Sbjct: 257 TRDFIFVEDVANGLIACA 274
>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|B Chain B, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|C Chain C, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
pdb|1ORR|D Chain D, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed
With Nad And Cdp
Length = 347
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 24/199 (12%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFD 70
++TGG GF +L + + + +LS A + LG +V D
Sbjct: 5 LITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNF------EFVHGD 58
Query: 71 LRHKAQVLQALQG--AEVVFHMA---APNSSINNHKLHHSVNVEGTKNVIDACAELKVK- 124
+R+K V + + + FH+A A +SI+N + +NV GT N+++A +
Sbjct: 59 IRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNC 118
Query: 125 RLIYTSSPSVVFDGVHGIINGNE----ALPYPPKHN-----DF---YSATKAEGEALVIK 172
+IY+S+ V D N E + P ++ DF Y +K + ++
Sbjct: 119 NIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLD 178
Query: 173 ANGTNGLLTCCIRPSSIFG 191
GL T R SS++G
Sbjct: 179 YARIFGLNTVVFRHSSMYG 197
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 59/274 (21%), Positives = 110/274 (40%), Gaps = 43/274 (15%)
Query: 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALR 60
+ E ++ +VTGG G+ H V LI V +LS+S ++ L E L
Sbjct: 5 LQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNST----YDSVARL-EVLT 59
Query: 61 SGRAHYVSFDLRHKAQVLQALQGAEV--VFHMAAPNSSINNHKL---HHSVNVEGTKNVI 115
+ DL + + + + ++ V H A + + ++ ++ N+ GT ++
Sbjct: 60 KHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLL 119
Query: 116 DACAELKVKRLIYTSSPSVVFDGVH--GIINGNEALPYPPKH-------------NDFYS 160
+ + V + +++SS +V D +I E P P + ND Y+
Sbjct: 120 ELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILNDLYN 179
Query: 161 ATKAEGEALVIKANGTNGLLTCCIRPSSIFG------PGDRLLVPSLVAAARAGKSKFII 214
+ K + +++ G PS + G P + L + VA R K +I
Sbjct: 180 SDKKSWKFAILRYFNPIG-----AHPSGLIGEDPLGIPNNLLPYMAQVAVGRREK-LYIF 233
Query: 215 G------DGNNVYDFTYVANVAHAHICAERALAS 242
G DG + D+ +V ++A HI A + L +
Sbjct: 234 GDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEA 267
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 35/216 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADL-SDSIALEPHEEQGILGEALRSGRAHYVSF 69
++ G GF HL E L+R D + V D+ SD+I+ L H+V
Sbjct: 4 LILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS-----------RFLNHPHFHFVEG 52
Query: 70 DLR-HKAQVLQALQGAEVVFHM---AAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
D+ H + ++ +VV + A P N ++ E +I C + + KR
Sbjct: 53 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KR 111
Query: 126 LIYTSSPSV-------VFDGVH-GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN 177
+I+ S+ V FD H +I G P YS +K + ++
Sbjct: 112 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKP-----RWIYSVSKQLLDRVIWAYGEKE 166
Query: 178 GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFI 213
GL RP + GP RL + AAR G S+ I
Sbjct: 167 GLQFTLFRPFNWMGP--RL---DNLNAARIGSSRAI 197
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 35/216 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADL-SDSIALEPHEEQGILGEALRSGRAHYVSF 69
++ G GF HL E L+R D + V D+ SD+I+ L H+V
Sbjct: 17 LILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS-----------RFLNHPHFHFVEG 65
Query: 70 DLR-HKAQVLQALQGAEVVFHM---AAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
D+ H + ++ +VV + A P N ++ E +I C + + KR
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KR 124
Query: 126 LIYTSSPSV-------VFDGVH-GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN 177
+I+ S+ V FD H +I G P YS +K + ++
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKP-----RWIYSVSKQLLDRVIWAYGEKE 179
Query: 178 GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFI 213
GL RP + GP RL + AAR G S+ I
Sbjct: 180 GLQFTLFRPFNWMGP--RL---DNLNAARIGSSRAI 210
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 35/216 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADL-SDSIALEPHEEQGILGEALRSGRAHYVSF 69
++ G GF HL E L+R D + V D+ SD+I+ L H+V
Sbjct: 17 LILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS-----------RFLNHPHFHFVEG 65
Query: 70 DLR-HKAQVLQALQGAEVVFHM---AAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
D+ H + ++ +VV + A P N ++ E +I C + + KR
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KR 124
Query: 126 LIYTSSPSV-------VFDGVH-GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN 177
+I+ S+ V FD H +I G P YS +K + ++
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKP-----RWIYSVSKQLLDRVIWAYGEKE 179
Query: 178 GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFI 213
GL RP + GP RL + AAR G S+ I
Sbjct: 180 GLQFTLFRPFNWMGP--RL---DNLNAARIGSSRAI 210
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 35/216 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADL-SDSIALEPHEEQGILGEALRSGRAHYVSF 69
++ G GF HL E L+R D + V D+ SD+I+ L H+V
Sbjct: 17 LILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS-----------RFLNHPHFHFVEG 65
Query: 70 DLR-HKAQVLQALQGAEVVFHM---AAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
D+ H + ++ +VV + A P N ++ E +I C + + KR
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KR 124
Query: 126 LIYTSSPSV-------VFDGVH-GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN 177
+I+ S+ V FD H +I G P YS +K + ++
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKP-----RWIYSVSKQLLDRVIWAYGEKE 179
Query: 178 GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFI 213
GL RP + GP RL + AAR G S+ I
Sbjct: 180 GLQFTLFRPFNWMGP--RL---DNLNAARIGSSRAI 210
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 35/216 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADL-SDSIALEPHEEQGILGEALRSGRAHYVSF 69
++ G GF HL E L+R D + V D+ SD+I+ L H+V
Sbjct: 17 LILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS-----------RFLNHPHFHFVEG 65
Query: 70 DLR-HKAQVLQALQGAEVVFHM---AAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
D+ H + ++ +VV + A P N ++ E +I C + + KR
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KR 124
Query: 126 LIYTSSPSV-------VFDGVH-GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN 177
+I+ S+ V FD H +I G P YS +K + ++
Sbjct: 125 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKP-----RWIYSVSKQLLDRVIWAYGEKE 179
Query: 178 GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFI 213
GL RP + GP RL + AAR G S+ I
Sbjct: 180 GLQFTLFRPFNWMGP--RL---DNLNAARIGSSRAI 210
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 77/187 (41%), Gaps = 23/187 (12%)
Query: 9 LCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHY-V 67
L +VTG GF A H+VE L+ + + VR S S + +A GR V
Sbjct: 13 LVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKRW----DAKYPGRFETAV 67
Query: 68 SFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAEL-KVKRL 126
D + + ++GA V H+A+ S N + + + GT N + A A VKR
Sbjct: 68 VEDXLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRF 127
Query: 127 IYTSS------PSVVFDGVH--------GIINGNEALPY--PPKHNDFYSATKAEGEALV 170
+ TSS P +G++ I+ + LP P K Y+A+K E E
Sbjct: 128 VLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAA 187
Query: 171 IKANGTN 177
K N
Sbjct: 188 WKFXDEN 194
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 35/216 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADL-SDSIALEPHEEQGILGEALRSGRAHYVSF 69
++ G GF HL E L+R D + V D+ SD+I+ L H+V
Sbjct: 17 LILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS-----------RFLNHPHFHFVEG 65
Query: 70 DLR-HKAQVLQALQGAEVVFHM---AAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
D+ H + ++ +VV + A P N ++ E +I C + + KR
Sbjct: 66 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KR 124
Query: 126 LIYTSSPSV-------VFDGVH-GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN 177
+I+ S+ V FD H +I G P YS +K + ++
Sbjct: 125 IIFPSTAEVYGMCSDKYFDEDHSNLIVGPVNKP-----RWIYSVSKQLLDRVIWAYGEKE 179
Query: 178 GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFI 213
GL RP + GP RL + AAR G S+ I
Sbjct: 180 GLQFTLFRPFNWMGP--RL---DNLNAARIGSSRAI 210
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 35/216 (16%)
Query: 11 VVTGGRGFAARHLVEMLIRYDMFSVRIADL-SDSIALEPHEEQGILGEALRSGRAHYVSF 69
++ G GF HL E L+R D + V D+ SD+I+ L H+V
Sbjct: 319 LILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS-----------RFLNHPHFHFVEG 367
Query: 70 DLR-HKAQVLQALQGAEVVFHM---AAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKR 125
D+ H + ++ +VV + A P N ++ E +I C + + KR
Sbjct: 368 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KR 426
Query: 126 LIYTSSPSV-------VFDGVH-GIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTN 177
+I+ S+ V FD H +I G P YS +K + ++
Sbjct: 427 IIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKP-----RWIYSVSKQLLDRVIWAYGEKE 481
Query: 178 GLLTCCIRPSSIFGPGDRLLVPSLVAAARAGKSKFI 213
GL RP + GP RL + AAR G S+ I
Sbjct: 482 GLQFTLFRPFNWMGP--RL---DNLNAARIGSSRAI 512
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 61 SGRAHYVSFDLRHKAQVLQALQ--GAEVVFHMAAPNSSINNHK--LHHSVNVEGTKNVID 116
+G +++ D+ ++ ++ +A++ + +FH+A S+ L + VN+ GT N+++
Sbjct: 38 TGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILE 97
Query: 117 ACAELKVKRLIYTSSPSV 134
A + +V++++ S+ V
Sbjct: 98 AAKQHRVEKVVIPSTIGV 115
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 45/78 (57%), Gaps = 4/78 (5%)
Query: 61 SGRAHYVSFDLRHKAQVLQALQ--GAEVVFHMAAPNSSINNHK--LHHSVNVEGTKNVID 116
+G +++ D+ ++ ++ +A++ + +FH+A S+ L + VN+ GT N+++
Sbjct: 38 TGGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILE 97
Query: 117 ACAELKVKRLIYTSSPSV 134
A + +V++++ S+ V
Sbjct: 98 AAKQHRVEKVVIPSTIGV 115
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 68/177 (38%), Gaps = 29/177 (16%)
Query: 6 NERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAH 65
+ + ++TGG G + V ++ I D + +Q + R
Sbjct: 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDEL------KQSEMAMEFNDPRMR 73
Query: 66 YVSFDLRHKAQVLQALQGAEVVFHMAA----PNSSINNHKLHHSVNVEGTKNVIDACAEL 121
+ D+R ++ AL+G ++ H AA P + N + + N+ G NVI+AC +
Sbjct: 74 FFIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKT-NIMGASNVINACLKN 132
Query: 122 KVKRLIYTSSPSVVFDGVHGIINGNEALPYPPKHNDFYSATKAEGEALVIKANGTNG 178
+ ++I S+ D IN Y ATK + L + AN G
Sbjct: 133 AISQVIALST-----DKAANPIN-------------LYGATKLCSDKLFVSANNFKG 171
>pdb|2B8N|A Chain A, Crystal Structure Of Glycerate Kinase (ec 2.7.1.31)
(tm1585) From Thermotoga Maritima At 2.70 A Resolution
pdb|2B8N|B Chain B, Crystal Structure Of Glycerate Kinase (ec 2.7.1.31)
(tm1585) From Thermotoga Maritima At 2.70 A Resolution
Length = 429
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 54/137 (39%), Gaps = 24/137 (17%)
Query: 57 EALRSGR-----AHYVSFDLRHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHS--VNVE 109
EA +GR V F R + + G E V H+ N +L S + +E
Sbjct: 291 EAREAGRFIASIXKEVKFKDRPLKKPAALIFGGETVVHVKGNGIGGRNQELALSAAIALE 350
Query: 110 GTKNVIDACAELKVKRLIYTSSPSVVFDGVHGIINGNEAL--------PYP-PKHNDFYS 160
G + VI A T P+ D GI++G+ A PY K+ND Y+
Sbjct: 351 GIEGVILCSAGTD-----GTDGPT---DAAGGIVDGSTAKTLKAXGEDPYQYLKNNDSYN 402
Query: 161 ATKAEGEALVIKANGTN 177
A K G L+ GTN
Sbjct: 403 ALKKSGALLITGPTGTN 419
>pdb|3M2P|A Chain A, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|B Chain B, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|C Chain C, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|D Chain D, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|E Chain E, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
pdb|3M2P|F Chain F, The Crystal Structure Of Udp-N-Acetylglucosamine
4-Epimerase From Bacillus Cereus
Length = 311
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 12 VTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQGILGEALRSGRAHYVSFDL 71
VTGG GF +++VE + D + I L + I +A+ + L
Sbjct: 7 VTGGTGFLGQYVVESIKN---------DGNTPIILT----RSIGNKAINDYEYRVSDYTL 53
Query: 72 RHKAQVLQALQGAEVVFHMAAPNSSINNHKLHHSVNVEGTKNVIDACAELKVKRLIYTSS 131
++ L + V H+AA S H + T+N+ DAC E + ++Y S+
Sbjct: 54 E---DLINQLNDVDAVVHLAATRGSQGKISEFHDNEIL-TQNLYDACYENNISNIVYAST 109
Query: 132 PSVVFDGVHGIINGNEALPYP 152
S D N E LP P
Sbjct: 110 ISAYSDETSLPWNEKE-LPLP 129
>pdb|4DQX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From
Rhizobium Etli Cfn 42
pdb|4DQX|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase From
Rhizobium Etli Cfn 42
pdb|4DQX|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase From
Rhizobium Etli Cfn 42
pdb|4DQX|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase From
Rhizobium Etli Cfn 42
Length = 277
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 1 MSGEENERLCVVTGGRGFAARHLVEMLIRYDMFSVRIADLSDSIALEPHEEQG 53
S + N+R+C+VTGG R E+ + + V +AD+++ A+ E G
Sbjct: 21 QSXDLNQRVCIVTGGGSGIGRATAELFAKNGAYVV-VADVNEDAAVRVANEIG 72
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Query: 256 FVTNMESIKFWEFVSLILEGLGYQRPRIKIPAFVMMP-----IAHMVELTYRLLGPYGMK 310
F+ N+++ + W F +E + + K +V+ + +++++ LG
Sbjct: 245 FLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFLDVSFGYLGLNWKD 304
Query: 311 VPQLTPSRVRLLSCSR-TFDCSKAKDLLGYMPIVPLEEGIKRTVD 354
++ R D SKAK++LG+ P V E+ +K VD
Sbjct: 305 YVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVD 349
>pdb|1IUG|A Chain A, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
pdb|1IUG|B Chain B, The Crystal Structure Of Aspartate Aminotransferase Which
Belongs To Subgroup Iv From Thermus Thermophilus
Length = 352
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 160 SATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRLLVP 199
A + EGE L++ +GT + ++F PG+R+LVP
Sbjct: 45 EAFRTEGEVLILTGSGTLAMEALV---KNLFAPGERVLVP 81
>pdb|1E7Q|A Chain A, Gdp 4-Keto-6-Deoxy-D-Mannose Epimerase Reductase S107a
Length = 321
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 156 NDFYSATKAEGEALVIKANGTNGLLTCCIRPSSIFGPGDRL------LVPSLV-----AA 204
N+ Y+ K G L N G + P++++GP D ++P+L+ A
Sbjct: 133 NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEAT 192
Query: 205 ARAGKSKFIIGDGNNVYDFTYVANVAHAHI 234
A++ + G G + +F +V ++A A I
Sbjct: 193 AQSAPDVVVWGSGTPMREFLHVDDMAAASI 222
>pdb|1Y0E|A Chain A, Crystal Structure Of Putative Mannac-6-P Epimerase From
Staphylococcus Aureus (Strain N315)
pdb|1Y0E|B Chain B, Crystal Structure Of Putative Mannac-6-P Epimerase From
Staphylococcus Aureus (Strain N315)
Length = 223
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 140 HGIINGNEALPYPPKHNDFYSATKA----EGEALVIKANGTNGLL 180
HG+I +ALP P H+ F + A EG A+ I+AN +L
Sbjct: 5 HGLIVSCQALPDEPLHSSFIXSKXALAAYEGGAVGIRANTKEDIL 49
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 212 FIIGDGNNVYDFTYVA------NVAH----AHICAERALASEVTVAEKAAGQAY 255
F G GNNVY F VA N H + A +AL S++T E A G+ Y
Sbjct: 441 FTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLY 494
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 212 FIIGDGNNVYDFTYVA------NVAH----AHICAERALASEVTVAEKAAGQAY 255
F G GNNVY F VA N H + A +AL S++T E A G+ Y
Sbjct: 440 FTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLY 493
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 212 FIIGDGNNVYDFTYVA------NVAH----AHICAERALASEVTVAEKAAGQAY 255
F G GNNVY F VA N H + A +AL S++T E A G+ Y
Sbjct: 460 FTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLY 513
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 212 FIIGDGNNVYDFTYVA------NVAH----AHICAERALASEVTVAEKAAGQAY 255
F G GNNVY F VA N H + A +AL S++T E A G+ Y
Sbjct: 438 FTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLY 491
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 212 FIIGDGNNVYDFTYVA------NVAH----AHICAERALASEVTVAEKAAGQAY 255
F G GNNVY F VA N H + A +AL S++T E A G+ Y
Sbjct: 460 FTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLY 513
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,251,300
Number of Sequences: 62578
Number of extensions: 575922
Number of successful extensions: 1205
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1140
Number of HSP's gapped (non-prelim): 77
length of query: 485
length of database: 14,973,337
effective HSP length: 103
effective length of query: 382
effective length of database: 8,527,803
effective search space: 3257620746
effective search space used: 3257620746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)