BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047228
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82730|MGDG2_ARATH Monogalactosyldiacylglycerol synthase 2, chloroplastic
OS=Arabidopsis thaliana GN=MGD2 PE=1 SV=1
Length = 468
Score = 270 bits (691), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 144/188 (76%), Positives = 157/188 (83%), Gaps = 14/188 (7%)
Query: 106 VSLTEKVLQRVYGNHSTSSSSNLG-------------CSFDSDDDNEEDGESTVELMQIG 152
++L EKVL+RVYG ++ S G S DD +ED ES++EL+QIG
Sbjct: 6 MALAEKVLERVYGTSKSAVSVTSGDGEKTHRHTHHHIHRIKSYDDIDED-ESSLELIQIG 64
Query: 153 AERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSY 212
AERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGD+YR+ VKDV KEY GWPLNDMERSY
Sbjct: 65 AERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDKYRVIVKDVWKEYTGWPLNDMERSY 124
Query: 213 KFMVKHVQLWKVAFHSTSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHI 272
KFMVKHVQLWKVAFHSTSPKWIHSCYLAA+AAYYAKEVEAGLMEYKP+IIISVHPLMQHI
Sbjct: 125 KFMVKHVQLWKVAFHSTSPKWIHSCYLAAIAAYYAKEVEAGLMEYKPEIIISVHPLMQHI 184
Query: 273 PLWVLKWQ 280
PLWVLKWQ
Sbjct: 185 PLWVLKWQ 192
>sp|Q9SI93|MGDG3_ARATH Monogalactosyldiacylglycerol synthase 3, chloroplastic
OS=Arabidopsis thaliana GN=MGD3 PE=1 SV=2
Length = 465
Score = 269 bits (688), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 132/196 (67%), Positives = 150/196 (76%), Gaps = 11/196 (5%)
Query: 96 VMTVAYPK-KAVSLTEKVLQRVYGNHSTSSSSNLGCSFDSDDDNE----------EDGES 144
+M V P+ ++ S+TEKV +RVY N + S+ + D E ED E
Sbjct: 1 MMKVVSPRTRSDSITEKVFRRVYSNFNISTVEDEYIHRQRSSDYEKESRLRKRGLEDKEE 60
Query: 145 TVELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWP 204
+E+ Q+GAER K VLILMSDTGGGHRASAEAIRDAFKIEFGD+YRI +KDV KEY GWP
Sbjct: 61 VMEMEQMGAERIKTVLILMSDTGGGHRASAEAIRDAFKIEFGDDYRIIIKDVWKEYTGWP 120
Query: 205 LNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIIS 264
LNDMER YKFMVKHV LW VAFH TSPKWIH YL+A+AAYYAKE+EAGLMEYKPDIIIS
Sbjct: 121 LNDMERQYKFMVKHVGLWSVAFHGTSPKWIHKSYLSALAAYYAKEIEAGLMEYKPDIIIS 180
Query: 265 VHPLMQHIPLWVLKWQ 280
VHPLMQHIPLWV+KWQ
Sbjct: 181 VHPLMQHIPLWVMKWQ 196
>sp|Q0DWQ1|MGDG3_ORYSJ Probable monogalactosyldiacylglycerol synthase 3, chloroplastic
OS=Oryza sativa subsp. japonica GN=MGD3 PE=3 SV=2
Length = 508
Score = 256 bits (653), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 116/152 (76%), Positives = 137/152 (90%), Gaps = 1/152 (0%)
Query: 130 CSFDSDDDN-EEDGESTVELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDE 188
C D DD+ E+ E TVEL+Q+GA R KNVLILMSDTGGGHRASA+AI+D F+IEFGD+
Sbjct: 72 CGPDEDDEPFWEEEEGTVELVQLGANRAKNVLILMSDTGGGHRASAQAIKDPFRIEFGDD 131
Query: 189 YRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCYLAAMAAYYAK 248
YR+FVKD+CK++AGWPLN+ME SYKFMVKHVQLWKVAFH+TSP+W+H YLAA+A++YAK
Sbjct: 132 YRVFVKDLCKDHAGWPLNNMESSYKFMVKHVQLWKVAFHTTSPRWVHCFYLAALASFYAK 191
Query: 249 EVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQ 280
+VEAGL +YKPDIIISVHPLMQHIPLWVLKWQ
Sbjct: 192 KVEAGLKKYKPDIIISVHPLMQHIPLWVLKWQ 223
>sp|Q6UTZ2|MGDG2_ORYSJ Probable monogalactosyldiacylglycerol synthase 2, chloroplastic
OS=Oryza sativa subsp. japonica GN=MGD2 PE=2 SV=2
Length = 469
Score = 226 bits (576), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 115/195 (58%), Positives = 139/195 (71%), Gaps = 11/195 (5%)
Query: 95 MVMTVAYPKKAVSLTEKVLQRVYGNHSTSSSSNLGCSF-------DSDDDNEEDGESTVE 147
MV++VA P++ S+ + VL V G L C+F EDG
Sbjct: 1 MVISVATPRR--SIRDAVLGGVLGAGGRQLYQPLRCAFYDGAAGGGLTAALSEDGAEGGV 58
Query: 148 LMQIGAERT--KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPL 205
+ G + KNVLILMSDTGGGHRASAEA+RDAF++EFGD Y++FV+D+ KEY GWPL
Sbjct: 59 PLPCGRKTAAAKNVLILMSDTGGGHRASAEALRDAFRLEFGDAYQVFVRDLGKEYGGWPL 118
Query: 206 NDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISV 265
NDMERSYKFM++HV+LWKVAFH TSP+W+H YLAA+A +YA EV AG+M Y PDIIISV
Sbjct: 119 NDMERSYKFMIRHVRLWKVAFHGTSPRWVHGMYLAALAYFYANEVVAGIMRYNPDIIISV 178
Query: 266 HPLMQHIPLWVLKWQ 280
HPLMQHIPLWVLKWQ
Sbjct: 179 HPLMQHIPLWVLKWQ 193
>sp|A2YTP9|MGDG2_ORYSI Probable monogalactosyldiacylglycerol synthase 2, chloroplastic
OS=Oryza sativa subsp. indica GN=MGD2 PE=3 SV=2
Length = 469
Score = 226 bits (576), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 115/195 (58%), Positives = 139/195 (71%), Gaps = 11/195 (5%)
Query: 95 MVMTVAYPKKAVSLTEKVLQRVYGNHSTSSSSNLGCSF-------DSDDDNEEDGESTVE 147
MV++VA P++ S+ + VL V G L C+F EDG
Sbjct: 1 MVISVATPRR--SIRDAVLGGVLGAGGRQLYQPLRCAFYDGAAGGGLTAALSEDGAEGGV 58
Query: 148 LMQIGAERT--KNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPL 205
+ G + KNVLILMSDTGGGHRASAEA+RDAF++EFGD Y++FV+D+ KEY GWPL
Sbjct: 59 PLPCGRKTAAAKNVLILMSDTGGGHRASAEALRDAFRLEFGDAYQVFVRDLGKEYGGWPL 118
Query: 206 NDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISV 265
NDMERSYKFM++HV+LWKVAFH TSP+W+H YLAA+A +YA EV AG+M Y PDIIISV
Sbjct: 119 NDMERSYKFMIRHVRLWKVAFHGTSPRWVHGMYLAALAYFYANEVVAGIMRYNPDIIISV 178
Query: 266 HPLMQHIPLWVLKWQ 280
HPLMQHIPLWVLKWQ
Sbjct: 179 HPLMQHIPLWVLKWQ 193
>sp|O81770|MGDG1_ARATH Monogalactosyldiacylglycerol synthase 1, chloroplastic
OS=Arabidopsis thaliana GN=MGD1 PE=1 SV=1
Length = 533
Score = 178 bits (451), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 84/164 (51%), Positives = 111/164 (67%), Gaps = 5/164 (3%)
Query: 120 HSTSSSSNLGCSFDSDDDNEED-----GESTVELMQIGAERTKNVLILMSDTGGGHRASA 174
S +S +G S D + E GE + L + A+R K VLILMSDTGGGHRASA
Sbjct: 100 ESFASVGGVGLSSDENGIRENGTGGVLGEEGLPLNGVEADRPKKVLILMSDTGGGHRASA 159
Query: 175 EAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWI 234
EAIR AF EFGDEY++F+ D+ ++ WP N + RSY F+VKH LWK+ ++ TSP+ +
Sbjct: 160 EAIRAAFNQEFGDEYQVFITDLWTDHTPWPFNQLPRSYNFLVKHGTLWKMTYYGTSPRIV 219
Query: 235 HSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLK 278
H AA + + A+E+ GLM+Y+PDIIISVHPLMQH+PL VL+
Sbjct: 220 HQSNFAATSTFIAREIAQGLMKYQPDIIISVHPLMQHVPLRVLR 263
>sp|P93115|MGDG_CUCSA Monogalactosyldiacylglycerol synthase, chloroplastic OS=Cucumis
sativus PE=1 SV=1
Length = 525
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 109/158 (68%), Gaps = 5/158 (3%)
Query: 126 SNLGCSFDSDDDNEEDG-----ESTVELMQIGAERTKNVLILMSDTGGGHRASAEAIRDA 180
++LG D + +DG + + L +I AE K VLILMSDTGGGHRASAEAI+ A
Sbjct: 100 ASLGGVSDETNGIRDDGFGVSQDGALPLNKIEAENPKRVLILMSDTGGGHRASAEAIKAA 159
Query: 181 FKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCYLA 240
F EFG+ Y++F+ D+ ++ WP N + RSY F+VKH LWK+ ++ T+PK IH A
Sbjct: 160 FNEEFGNNYQVFITDLWTDHTPWPFNQLPRSYNFLVKHGTLWKMTYYVTAPKVIHQSNFA 219
Query: 241 AMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLK 278
A + + A+EV GLM+Y+PDIIISVHPLMQH+P+ +L+
Sbjct: 220 ATSTFIAREVAKGLMKYRPDIIISVHPLMQHVPIRILR 257
>sp|Q9SM44|MGDG_SPIOL Monogalactosyldiacylglycerol synthase, chloroplastic OS=Spinacia
oleracea GN=MGD A PE=1 SV=1
Length = 522
Score = 169 bits (427), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 110/160 (68%), Gaps = 5/160 (3%)
Query: 126 SNLGCSFDSDDDNEEDGESTVELMQIGA-----ERTKNVLILMSDTGGGHRASAEAIRDA 180
S++G + + ++G +E +++ E K VLILMSDTGGGHRASAEAI+ A
Sbjct: 95 SSIGLNSGESNGVSDNGHGVLEDVRVPVNAVEPESPKRVLILMSDTGGGHRASAEAIKAA 154
Query: 181 FKIEFGDEYRIFVKDVCKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCYLA 240
F EFGD+Y++FV D+ E+ WP N + RSY F+VKH LWK+ ++ TSP+ IH A
Sbjct: 155 FNEEFGDDYQVFVTDLWSEHTPWPFNQLPRSYNFLVKHGPLWKMMYYGTSPRVIHQSNFA 214
Query: 241 AMAAYYAKEVEAGLMEYKPDIIISVHPLMQHIPLWVLKWQ 280
A + + A+EV GLM+Y+PDIIISVHPLMQH+PL +L+ +
Sbjct: 215 ATSVFIAREVARGLMKYQPDIIISVHPLMQHVPLRILRGR 254
>sp|Q9FZL3|MGDG_TOBAC Probable monogalactosyldiacylglycerol synthase, chloroplastic
OS=Nicotiana tabacum GN=MGD A PE=2 SV=1
Length = 535
Score = 167 bits (424), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 76/142 (53%), Positives = 104/142 (73%), Gaps = 5/142 (3%)
Query: 137 DNEEDGESTVELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDV 196
+NE ++ VE +E K VLILMSDTGGGHRASAEAIR AF EFGD+Y++F+ D+
Sbjct: 130 ENEGIPDNGVE-----SEPPKKVLILMSDTGGGHRASAEAIRSAFNEEFGDKYQVFITDL 184
Query: 197 CKEYAGWPLNDMERSYKFMVKHVQLWKVAFHSTSPKWIHSCYLAAMAAYYAKEVEAGLME 256
E+ WP N + RSY F+VKH LW++ +++T+P+ +H AA + + A+EV GLM+
Sbjct: 185 WTEHTPWPFNQLPRSYNFLVKHGSLWRMTYYATAPRLVHQTNFAATSTFIAREVAKGLMK 244
Query: 257 YKPDIIISVHPLMQHIPLWVLK 278
Y+PDIIISVHPLMQH+PL +L+
Sbjct: 245 YQPDIIISVHPLMQHVPLRILR 266
>sp|Q9FZL4|MGDG_SOYBN Probable monogalactosyldiacylglycerol synthase, chloroplastic
OS=Glycine max GN=MGD A PE=2 SV=1
Length = 530
Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 95/126 (75%)
Query: 153 AERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSY 212
E+ K VLILMSDTGGGHRASAEAI+ AF EFGD+Y++FV D+ ++ WP N + RSY
Sbjct: 135 GEKPKKVLILMSDTGGGHRASAEAIKAAFYQEFGDDYQVFVTDLWADHTPWPFNQLPRSY 194
Query: 213 KFMVKHVQLWKVAFHSTSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHI 272
F+VKH LWK+ ++ T+P+ +H AA + A+EV GLM+Y+PDIIISVHPLMQH+
Sbjct: 195 SFLVKHGPLWKMTYYGTAPRVVHQSNFAATGTFIAREVAKGLMKYQPDIIISVHPLMQHV 254
Query: 273 PLWVLK 278
PL +L+
Sbjct: 255 PLRILR 260
>sp|Q69QJ7|MGDG1_ORYSJ Probable monogalactosyldiacylglycerol synthase 1, chloroplastic
OS=Oryza sativa subsp. japonica GN=MGD1 PE=2 SV=1
Length = 535
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 97/126 (76%)
Query: 153 AERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLNDMERSY 212
AE K VLILMSDTGGGHRASAEAI+ AF EFGD+Y++FV D+ ++ WP N + RSY
Sbjct: 140 AEAPKKVLILMSDTGGGHRASAEAIKAAFIQEFGDDYQVFVTDLWTDHTPWPFNQLPRSY 199
Query: 213 KFMVKHVQLWKVAFHSTSPKWIHSCYLAAMAAYYAKEVEAGLMEYKPDIIISVHPLMQHI 272
F+VKH LWK+ ++ T+P+ +H + AA + + A+EV GLM+Y+PD+IISVHPLMQH+
Sbjct: 200 SFLVKHGPLWKMTYYGTAPRVVHQPHFAATSTFIAREVAKGLMKYQPDVIISVHPLMQHV 259
Query: 273 PLWVLK 278
PL +L+
Sbjct: 260 PLRILR 265
>sp|Q53NF0|BGL35_ORYSJ Putative beta-glucosidase 35 OS=Oryza sativa subsp. japonica
GN=BGLU35 PE=3 SV=2
Length = 487
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 147 ELMQIGAERTKNVLILMSDTGGGHRASAEAIRDAFKIEFGDEYRIFVKDVCKEYAGWPLN 206
E++ R N I +++ GG + EA+RD +IEF ++ FV + GW
Sbjct: 396 EVLLYTKRRYNNPAIYITENGGNNSTVPEALRDGHRIEFHSKHLQFVNHAIRN--GWGDG 453
Query: 207 DMER 210
++R
Sbjct: 454 YLDR 457
>sp|A3MWX6|SRP54_PYRCJ Signal recognition particle 54 kDa protein OS=Pyrobaculum
calidifontis (strain JCM 11548 / VA1) GN=srp54 PE=3 SV=1
Length = 431
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 138 NEEDGESTVELMQIGAERTKNVLILMSDTGGGHRASAEAIRD 179
E DG++ VE+ G + KN+ +++ DT G HR E +++
Sbjct: 158 GERDGKNAVEIAVRGVQNFKNMDVVIIDTAGRHRNEEELLKE 199
>sp|B1Y9L4|SRP54_PYRNV Signal recognition particle 54 kDa protein OS=Pyrobaculum
neutrophilum (strain DSM 2338 / JCM 9278 / V24Sta)
GN=srp54 PE=3 SV=1
Length = 433
Score = 31.6 bits (70), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 138 NEEDGESTVELMQIGAERTKNVLILMSDTGGGHR 171
E DG+ VE+ + G + KN+ +++ DT G HR
Sbjct: 159 GERDGKDAVEIARRGVQNLKNLDVVIVDTAGRHR 192
>sp|Q8ZT95|SRP54_PYRAE Signal recognition particle 54 kDa protein OS=Pyrobaculum
aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM
9630 / NBRC 100827) GN=srp54 PE=3 SV=1
Length = 433
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 138 NEEDGESTVELMQIGAERTKNVLILMSDTGGGHR 171
E DG+ VE+ + G + KN+ +++ DT G HR
Sbjct: 159 GERDGKDAVEIAKRGVQNFKNMDVIIVDTAGRHR 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,084,448
Number of Sequences: 539616
Number of extensions: 3976603
Number of successful extensions: 16264
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 16241
Number of HSP's gapped (non-prelim): 31
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)